Psyllid ID: psy13076

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
Protein Sequence
MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT
Secondary Structure (PSIPRED)
ccccccEEEEEEcccccEEEEEEccccEEEEEccccccccEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEEEccccccEEEEEEcccccEEEEEccccccEEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccEEcccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEEEcccEEEEEEccccEEEEEccccccccEEcccccccEEEEEEcccccEEEEEEccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEccccccccccccccEEcccccEEEEEEccEEEEEEcccccccEEEccccccEEEEEEcccccEEEEEEcccEEEEEEcccccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEcccccEcEccccccccEEEEEEccccccEEEEEEccccEEEEEcccEEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEccccHHHcEEEEEEEccEEEEEEccccEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccc
Coil and Loop (DISEMBL)
MGNQVEDQQVSCLWQGDYLLTVSLSGFISyldvnnpstpirvikghnkpitalalspdrgtvftgshdgfitrwNAKTEYIFatlprtqrgqpivlggdpkgknflytngnsviirnienpaisdiytehscavnvakyspsgfyiasgdisgkvriwdtvnkehilknefhpiggpikdiawspdnqrmVVVGEgrerfghvfmsetgtsvgeisgqskpinscdfkpsrpfriitgsedntiavfegppfkfkmtkqEHSRFVQavryspsgshfasagfdgkvflydgaSADLvselgnpahkggvyavawkpdgtqlltasgdktcklWDIETKSAVSEFLmgnqvedqqvsclwqgdYLLTVSLSGFISyldvnnpstpirvikghnkpitalalspdrgtvftgshdgfitrwnakt
Flexible Loop (DISEMBL)
MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAtlprtqrgqpivlggdpkgkNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIlknefhpiggpIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGtsvgeisgqskpinscdfkpSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT
Low Complexity Region (SEG)
MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT
Disordered region (IsUnstruct)
*********VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS*************************PFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW****
Disordered Region (DISOPRED)
MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT
Disordered Region (DISEMBL)
********QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT
Disordered Region (DISPRO)
****VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	423	2.2.26 [Sep-21-2011]
Q9VU68	608	Actin-interacting protein	yes	N/A	0.739	0.514	0.821	1e-173
Q6DIF4	607	WD repeat-containing prot	yes	N/A	0.810	0.565	0.632	1e-131
Q6PAX7	607	WD repeat-containing prot	N/A	N/A	0.810	0.565	0.627	1e-131
Q9W7F2	607	WD repeat-containing prot	N/A	N/A	0.810	0.565	0.624	1e-130
Q5RKI0	606	WD repeat-containing prot	yes	N/A	0.810	0.566	0.606	1e-126
O88342	606	WD repeat-containing prot	yes	N/A	0.810	0.566	0.604	1e-126
Q2KJH4	606	WD repeat-containing prot	yes	N/A	0.810	0.566	0.592	1e-125
O75083	606	WD repeat-containing prot	yes	N/A	0.810	0.566	0.595	1e-125
O93277	609	WD repeat-containing prot	yes	N/A	0.810	0.563	0.586	1e-124
P90587	601	66 kDa stress protein OS=	N/A	N/A	0.808	0.569	0.536	1e-106

>sp|Q9VU68|WDR1_DROME Actin-interacting protein 1 OS=Drosophila melanogaster GN=flr PE=2 SV=1

 Score =  607 bits (1565), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 280/341 (82%), Positives = 311/341 (91%)

Query: 81  IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
           I+ATLPRTQRGQPIVLG DPKGKNFLYTNGNSVIIRNIENPAI+D+YTEHSCAVNVAKYS
Sbjct: 14  IYATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRNIENPAIADVYTEHSCAVNVAKYS 73

Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
           PSGFYIASGD SGK+RIWDTVNKEH+LKNEF PI GPIKDI+WSPDNQR+V VGEGRERF
Sbjct: 74  PSGFYIASGDASGKIRIWDTVNKEHLLKNEFQPIAGPIKDISWSPDNQRIVAVGEGRERF 133

Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
           GHVFMSETGTSVGEISGQSK INS DF+P+RPFRI+TGSEDNTIAVFEGPPFKFKMTKQ+
Sbjct: 134 GHVFMSETGTSVGEISGQSKSINSADFRPARPFRIVTGSEDNTIAVFEGPPFKFKMTKQD 193

Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ 320
           HSRFVQAVRYSP G  FASAGFDGKVFLYDG S++LV E G+PAHKGGVYA+AWKPD TQ
Sbjct: 194 HSRFVQAVRYSPDGKFFASAGFDGKVFLYDGTSSELVGEFGSPAHKGGVYALAWKPDSTQ 253

Query: 321 LLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN 380
           LLT SGDKTC+LW +E++  VSEF+MG  V+DQQVSCLWQGD L+TVSLSG I+YL+V +
Sbjct: 254 LLTCSGDKTCRLWTVESRELVSEFVMGTTVDDQQVSCLWQGDNLITVSLSGVITYLNVAD 313

Query: 381 PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 421
           PS P+RV+KGHNKPIT L LS DR T++TGSHDG +T WN+
Sbjct: 314 PSKPLRVVKGHNKPITVLGLSDDRSTIYTGSHDGVVTNWNS 354

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Essential for organismal and cell viability. Required for the development of normal wing cell planar polarity.
Drosophila melanogaster (taxid: 7227)

>sp|Q6DIF4|WDR1_XENTR WD repeat-containing protein 1 OS=Xenopus tropicalis GN=wdr1 PE=2 SV=1

 Score =  469 bits (1206), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/346 (63%), Positives = 271/346 (78%), Gaps = 3/346 (0%)

Query: 81  IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
           +FA+LP+ +RG   ++ GDPKG NFLYTNG SVIIRNIENPAI+DIYTEH+  V VA+Y+
Sbjct: 8   VFASLPQVERGVAKIITGDPKGNNFLYTNGKSVIIRNIENPAIADIYTEHAHPVVVARYA 67

Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
           PSGFYIASGD SGK+RIWDT  KEH+LK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct: 68  PSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
           G VF+ +TG+SVGEISG  K INS D K +RP+R++TGS+DN  A FEGPPFKFK T  +
Sbjct: 128 GSVFLWDTGSSVGEISGNIKVINSVDIKQTRPYRLVTGSDDNCCAFFEGPPFKFKFTMAD 187

Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGT 319
           HSRFV  VR+SP GS  ASAG DG++FLYDG + + V  L G+ AH GG+YAV+W  D T
Sbjct: 188 HSRFVNCVRFSPDGSRLASAGADGQIFLYDGKTGEKVGNLGGSKAHDGGIYAVSWSADST 247

Query: 320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
           QLL+ASGDKT K+WD+   SAV+ F +G +V DQQ+ CLWQ DYLL+VSLSG+I+YLD N
Sbjct: 248 QLLSASGDKTAKIWDVAANSAVTTFHLGTEVLDQQLGCLWQKDYLLSVSLSGYINYLDKN 307

Query: 380 NPSTPIRVIKGHNKPITALAL--SPDRGTVFTGSHDGFITRWNAKT 423
           NPS P+RVIKGHNK I  + +  S  R T++TGSHDG I  W+A+T
Sbjct: 308 NPSRPLRVIKGHNKSIQCMTVHNSDGRSTIYTGSHDGHINYWDAET 353

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Doesn't sever actin filaments alone, but caps the barbed ends of filaments severed by cofilin, which blocks annealing and depolymerization and allows more extensive severing by cofilin.

Xenopus tropicalis (taxid: 8364)

>sp|Q6PAX7|WDR1B_XENLA WD repeat-containing protein 1-B OS=Xenopus laevis GN=wdr1-b PE=2 SV=1

 Score =  468 bits (1204), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 217/346 (62%), Positives = 271/346 (78%), Gaps = 3/346 (0%)

Query: 81  IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
           +FA+LP+ +RG   ++ GDPKG NFLYTNG SVIIRNI+NPAI+DIYTEH+  V VA+Y+
Sbjct: 8   VFASLPQVERGVAKIIAGDPKGNNFLYTNGKSVIIRNIDNPAIADIYTEHAHQVVVARYA 67

Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
           PSGFYIASGD SGK+RIWDT  KEH+LK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct: 68  PSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
           G VF+ +TG+SVGEI G  K INS D K +RP+R++TGS+DN  A FEGPPFKFK T  +
Sbjct: 128 GSVFLWDTGSSVGEIIGNIKVINSVDIKQTRPYRLVTGSDDNCCAFFEGPPFKFKFTMSD 187

Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGT 319
           HSRFV  VR+SP GS  ASAG DG++FLYDG + + V  L G+ AH GG+YAV+W PDGT
Sbjct: 188 HSRFVNCVRFSPDGSRLASAGADGQIFLYDGKTGEKVCSLGGSKAHDGGIYAVSWSPDGT 247

Query: 320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
           QLL+ASGDKT K+WD+   SAV+ F +G+ V DQQ+ CLWQ DYLL+VSLSG+I+YLD N
Sbjct: 248 QLLSASGDKTAKIWDVAANSAVTTFNLGSDVLDQQLGCLWQKDYLLSVSLSGYINYLDKN 307

Query: 380 NPSTPIRVIKGHNKPITALAL--SPDRGTVFTGSHDGFITRWNAKT 423
           NP+ P R+IKGHNK I  + +  S  R T++TGSHDG I  W+A+T
Sbjct: 308 NPAKPFRIIKGHNKSIQCMTVDKSDGRSTIYTGSHDGHINYWDAET 353

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Doesn't sever actin filaments alone, but caps the barbed ends of filaments severed by cofilin, which blocks annealing and depolymerization and allows more extensive severing by cofilin.

Xenopus laevis (taxid: 8355)

>sp|Q9W7F2|WDR1A_XENLA WD repeat-containing protein 1-A OS=Xenopus laevis GN=wdr1-a PE=2 SV=2

 Score =  466 bits (1199), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 216/346 (62%), Positives = 270/346 (78%), Gaps = 3/346 (0%)

Query: 81  IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
           +FA+LP+ +RG   +L GDPKG NFLYTNG SVIIRNI+NPAI+DIYTEH+    VA+Y+
Sbjct: 8   VFASLPQMERGVAKILAGDPKGNNFLYTNGKSVIIRNIDNPAIADIYTEHAHQAVVARYA 67

Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
           PSGFYIASGD SGK+RIWDT  KEH+LK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct: 68  PSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
             VF+ +TG+SVGEI+G  K INS D K +RP+R++TGS+DN  A  EGPPFKFK T  +
Sbjct: 128 ASVFLWDTGSSVGEITGNIKVINSVDIKQTRPYRLVTGSDDNCCAFLEGPPFKFKFTMSD 187

Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGT 319
           HSRFV  VR+SP GS  ASAG DG++FLYDG + + V  L G+ AH GG+YAV+W PDGT
Sbjct: 188 HSRFVNCVRFSPDGSKLASAGADGQIFLYDGKTGEKVCSLGGSKAHDGGIYAVSWSPDGT 247

Query: 320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
           QLL+ASGDKT K+WD+   SAV+ F +G+ V DQQ+ CLWQ DYLL+VSLSG+I+YLD N
Sbjct: 248 QLLSASGDKTTKIWDVAANSAVTTFNLGSDVLDQQLGCLWQKDYLLSVSLSGYINYLDKN 307

Query: 380 NPSTPIRVIKGHNKPITALAL--SPDRGTVFTGSHDGFITRWNAKT 423
           NP+ P+RVIKGHNK I  + +  S  R T++TGSHDG I  W+A+T
Sbjct: 308 NPARPLRVIKGHNKSIQCMTVNNSDGRSTIYTGSHDGHINYWDAET 353

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Doesn't sever actin filaments alone, but caps the barbed ends of filaments severed by cofilin, which blocks annealing and depolymerization and allows more extensive severing by cofilin.

Xenopus laevis (taxid: 8355)

>sp|Q5RKI0|WDR1_RAT WD repeat-containing protein 1 OS=Rattus norvegicus GN=Wdr1 PE=1 SV=3

 Score =  452 bits (1164), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/346 (60%), Positives = 270/346 (78%), Gaps = 3/346 (0%)

Query: 81  IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
           +FA+LP+ +RG   +LGGDPKG NFLYTNG  VI+RNI+NPA++DIYTEH+  V VAKY+
Sbjct: 8   VFASLPQVERGVSKILGGDPKGDNFLYTNGKCVILRNIDNPAVADIYTEHAHQVVVAKYA 67

Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
           PSGFYIASGDISGK+RIWDT  KEHILK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct: 68  PSGFYIASGDISGKLRIWDTTQKEHILKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
           G VF+ +TG+SVGEI+G +K INS D K +RP+R+ TGS+DN  A FEGPPFKFK T  +
Sbjct: 128 GAVFLWDTGSSVGEITGHNKVINSVDIKQNRPYRLATGSDDNCAAFFEGPPFKFKFTIGD 187

Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGT 319
           HSRFV  VR+SP G+ FA+A  DG++F+YDG + + V  L G+ AH GG+YA++W PD T
Sbjct: 188 HSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYAISWSPDST 247

Query: 320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
            LL+ASGDKT K+WD+   S VS F MG+ V DQQ+ CLWQ D+LL++SLSG+I+YLD N
Sbjct: 248 HLLSASGDKTSKIWDVNVNSVVSTFPMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKN 307

Query: 380 NPSTPIRVIKGHNKPITALALSPDRGT--VFTGSHDGFITRWNAKT 423
           NPS P+RVIKGH+K I  L +  + G   +++GSHDG I  W+++T
Sbjct: 308 NPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET 353

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins.

Rattus norvegicus (taxid: 10116)

>sp|O88342|WDR1_MOUSE WD repeat-containing protein 1 OS=Mus musculus GN=Wdr1 PE=1 SV=3

 Score =  451 bits (1159), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 209/346 (60%), Positives = 270/346 (78%), Gaps = 3/346 (0%)

Query: 81  IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
           +FA+LP+ +RG   +LGGDPKG +FLYTNG  VI+RNI+NPAI+DIYTEH+  V VAKY+
Sbjct: 8   VFASLPQVERGVSKILGGDPKGDHFLYTNGKCVILRNIDNPAIADIYTEHAHQVVVAKYA 67

Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
           PSGFYIASGDISGK+RIWDT  KEH+LK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct: 68  PSGFYIASGDISGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
           G VF+ +TG+SVGEI+G +K INS D K +RP+R+ TGS+DN  A FEGPPFKFK T  +
Sbjct: 128 GAVFLWDTGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPFKFKFTIGD 187

Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPDGT 319
           HSRFV  VR+SP G+ FA+A  DG++F+YDG + + V  LG + AH GG+YA++W PD T
Sbjct: 188 HSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGESKAHDGGIYAISWSPDST 247

Query: 320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
            LL+ASGDKT K+WD+   S VS F MG+ V DQQ+ CLWQ D+LL++SLSG+I+YLD N
Sbjct: 248 HLLSASGDKTSKIWDVNVNSVVSTFPMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKN 307

Query: 380 NPSTPIRVIKGHNKPITALALSPDRGT--VFTGSHDGFITRWNAKT 423
           NPS P+RVIKGH+K I  L +  + G   +++GSHDG I  W+++T
Sbjct: 308 NPSKPLRVIKGHSKSIQCLTVHRNGGKSYIYSGSHDGHINYWDSET 353

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins.

Mus musculus (taxid: 10090)

>sp|Q2KJH4|WDR1_BOVIN WD repeat-containing protein 1 OS=Bos taurus GN=WDR1 PE=2 SV=3

 Score =  449 bits (1154), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 205/346 (59%), Positives = 270/346 (78%), Gaps = 3/346 (0%)

Query: 81  IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
           +FA+LP+ +RG   ++GGDPKG +FLYTNG  VI+RNI+NPAI+DIYTEH+  V VAKY+
Sbjct: 8   VFASLPQVERGVSKIVGGDPKGNSFLYTNGKCVILRNIDNPAIADIYTEHAHQVVVAKYA 67

Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
           PSGFYIASGD+SGK+RIWDT  KEH+LK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct: 68  PSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
           G VF+ ++G+SVGEI+G +K INS D K SRP+R++TGS+DN  A FEGPPFKFK T  +
Sbjct: 128 GAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLVTGSDDNCAAFFEGPPFKFKFTISD 187

Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGT 319
           H RFV  VR+SP G+ FA+A  DG++F+YDG + + V  L G+ AH GG+YA++W PD T
Sbjct: 188 HGRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYAISWSPDST 247

Query: 320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
            LL+ASGDKT K+WD+   S V+ F MG+ V DQQ+ CLWQ D+LL++SLSG+I+YLD N
Sbjct: 248 HLLSASGDKTSKIWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKN 307

Query: 380 NPSTPIRVIKGHNKPITALALSPDRGT--VFTGSHDGFITRWNAKT 423
           NPS P+RVIKGH+K I  L +  + G   +++GSHDG I  W+++T
Sbjct: 308 NPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET 353

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins.

Bos taurus (taxid: 9913)

>sp|O75083|WDR1_HUMAN WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4

 Score =  447 bits (1150), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 206/346 (59%), Positives = 269/346 (77%), Gaps = 3/346 (0%)

Query: 81  IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
           +FA+LP+ +RG   ++GGDPKG NFLYTNG  VI+RNI+NPA++DIYTEH+  V VAKY+
Sbjct: 8   VFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQVVVAKYA 67

Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
           PSGFYIASGD+SGK+RIWDT  KEH+LK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct: 68  PSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
           G VF+ ++G+SVGEI+G +K INS D K SRP+R+ TGS+DN  A FEGPPFKFK T  +
Sbjct: 128 GAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGD 187

Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGT 319
           HSRFV  VR+SP G+ FA+A  DG++++YDG + + V  L G+ AH GG+YA++W PD T
Sbjct: 188 HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAISWSPDST 247

Query: 320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
            LL+ASGDKT K+WD+   S VS F MG+ V DQQ+ CLWQ D+LL+VSLSG+I+YLD N
Sbjct: 248 HLLSASGDKTSKIWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGYINYLDRN 307

Query: 380 NPSTPIRVIKGHNKPITALALSPDRGT--VFTGSHDGFITRWNAKT 423
           NPS P+ VIKGH+K I  L +  + G   +++GSHDG I  W+++T
Sbjct: 308 NPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET 353

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins.

Homo sapiens (taxid: 9606)

>sp|O93277|WDR1_CHICK WD repeat-containing protein 1 OS=Gallus gallus GN=WDR1 PE=2 SV=1

 Score =  444 bits (1141), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 203/346 (58%), Positives = 268/346 (77%), Gaps = 3/346 (0%)

Query: 81  IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
           +FA+LP+ +RG   ++GGDPKG NFLYTNG  V+IRNI+NPAI+DIYTEH+  V VAKY+
Sbjct: 10  VFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVVIRNIDNPAIADIYTEHAHQVVVAKYA 69

Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
           PSGFYIASGD+SGK+RIWDT  KEH+LK E+ P  G IKD+AW+ D++R+ VVGEGRE+F
Sbjct: 70  PSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDLAWTEDSKRIAVVGEGREKF 129

Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
           G VF+ ++G+SVGEI+G +K INS D K +RP+R+ TGS+DN  A FEGPPFKFK T  +
Sbjct: 130 GAVFLWDSGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPFKFKFTLSD 189

Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGT 319
           H+RFV  VR+SP G+ FA+A  DG++F+YDG + + V  L G  AH GG+YA++W PD +
Sbjct: 190 HTRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGGKAHDGGIYAISWSPDSS 249

Query: 320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
           QLL+ASGDKT K+WD+   S VS F MG+ V DQQ+ CLWQ D+LL++SLSG+I+YLD N
Sbjct: 250 QLLSASGDKTAKIWDVGANSVVSTFNMGSNVLDQQLGCLWQKDHLLSLSLSGYINYLDKN 309

Query: 380 NPSTPIRVIKGHNKPITALALSPDRGT--VFTGSHDGFITRWNAKT 423
           NP  P+RVIKGH+K I  L +  + G   +++GS+DG I  W++ T
Sbjct: 310 NPDKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSNDGHINYWDSDT 355

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins.

Gallus gallus (taxid: 9031)

>sp|P90587|WD66_PHYPO 66 kDa stress protein OS=Physarum polycephalum PE=2 SV=1

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/345 (53%), Positives = 239/345 (69%), Gaps = 3/345 (0%)

Query: 81  IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
           I++  P T RG+P+VLGGDPKG NFLYT GN+VIIRNI+NP  +DIY EH+    VAKY+
Sbjct: 8   IYSPSPATTRGKPVVLGGDPKGNNFLYTCGNAVIIRNIKNPNQADIYYEHAQPATVAKYA 67

Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
           PSGFYIASGD+SG +RIWDT   EH LK E   + GPI DIAWS D+QR+VVVG+G+ERF
Sbjct: 68  PSGFYIASGDLSGTLRIWDTTQLEHPLKIELKVLSGPIADIAWSADSQRLVVVGDGKERF 127

Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
           G   + ++G SVGEI+G SK I SCDFK +RPFR+ITG+ED     FEGPPFKFK   +E
Sbjct: 128 GAAILWDSGASVGEITGHSKAIASCDFKATRPFRVITGAEDFQANWFEGPPFKFKHAFKE 187

Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL--GNPAHKGGVYAVAWKPDG 318
           H+RF+  VR+SP G    + G D K F+ DG + + V  L  G  AH  G+Y+ +W PD 
Sbjct: 188 HTRFLTCVRFSPDGEKVLTVGLDKKGFILDGKTGEKVGALAGGADAHALGIYSCSWSPDS 247

Query: 319 TQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDV 378
            ++LT S DK+ K+WD +  + ++ F     VE Q +  LWQGD LL V+L+G I  LD 
Sbjct: 248 KKVLTVSADKSAKIWD-DKGTLLTTFAFEGGVESQLLGSLWQGDTLLAVNLNGDIFSLDQ 306

Query: 379 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           NNP TP R +KGHNK +T+LA       +++GS+DG I +WN +T
Sbjct: 307 NNPKTPARTLKGHNKLVTSLAFDTASKALYSGSYDGVILQWNLET 351

Associated with the process of cyst formation.

Physarum polycephalum (taxid: 5791)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
350417912	602	PREDICTED: actin-interacting protein 1-l	0.645	0.453	0.870	0.0
350417914	603	PREDICTED: actin-interacting protein 1-l	0.595	0.417	0.870	0.0
340715668	602	PREDICTED: actin-interacting protein 1-l	0.645	0.453	0.867	0.0
340715670	603	PREDICTED: actin-interacting protein 1-l	0.595	0.417	0.867	0.0
383853060	603	PREDICTED: actin-interacting protein 1-l	0.652	0.457	0.867	0.0
91088693	613	PREDICTED: similar to wd-repeat protein	0.848	0.585	0.839	0.0
328719145	604	PREDICTED: actin-interacting protein 1-l	0.744	0.521	0.865	0.0
328719143	603	PREDICTED: actin-interacting protein 1-l	0.742	0.520	0.865	0.0
270011670	602	hypothetical protein TcasGA2_TC005722 [T	0.605	0.425	0.858	0.0
328790339	603	PREDICTED: actin-interacting protein 1 [	0.595	0.417	0.850	0.0

>gi|350417912|ref|XP_003491641.1| PREDICTED: actin-interacting protein 1-like isoform 1 [Bombus impatiens]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/347 (87%), Positives = 331/347 (95%)

Query: 77  KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV 136
           +T+YIFATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+DIYTEHSC VNV
Sbjct: 4   ETKYIFATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIDNPAIADIYTEHSCPVNV 63

Query: 137 AKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 196
           AKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG
Sbjct: 64  AKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 123

Query: 197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 256
           RERFGHVFM+ETGTSVGEISGQSKPINSCDF+P+RPFR+ITGSEDNTIAVFEGPPFKFKM
Sbjct: 124 RERFGHVFMAETGTSVGEISGQSKPINSCDFRPARPFRLITGSEDNTIAVFEGPPFKFKM 183

Query: 257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP 316
           TKQEH+RFVQAVRYSPSG+ FASAGFDGKVF+YDG S+DLV E+G+PAH+GGVY VAWKP
Sbjct: 184 TKQEHTRFVQAVRYSPSGNLFASAGFDGKVFIYDGTSSDLVGEVGSPAHQGGVYGVAWKP 243

Query: 317 DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL 376
           DGTQLLTASGDKTCKLWD+ET+S VSEF MG+ V+DQQVSCLWQ  +LL+VSLSGFI+YL
Sbjct: 244 DGTQLLTASGDKTCKLWDVETRSLVSEFNMGSTVDDQQVSCLWQDKHLLSVSLSGFINYL 303

Query: 377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           DV NP+ P+R+IKGHNKPIT L LSPDRGT++TGSHDG+IT WNAKT
Sbjct: 304 DVANPTKPLRIIKGHNKPITVLTLSPDRGTIYTGSHDGYITNWNAKT 350

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417914|ref|XP_003491642.1| PREDICTED: actin-interacting protein 1-like isoform 2 [Bombus impatiens]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/347 (87%), Positives = 331/347 (95%)

Query: 77  KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV 136
           +T+YIFATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+DIYTEHSC VNV
Sbjct: 4   ETKYIFATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIDNPAIADIYTEHSCPVNV 63

Query: 137 AKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 196
           AKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG
Sbjct: 64  AKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 123

Query: 197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 256
           RERFGHVFM+ETGTSVGEISGQSKPINSCDF+P+RPFR+ITGSEDNTIAVFEGPPFKFKM
Sbjct: 124 RERFGHVFMAETGTSVGEISGQSKPINSCDFRPARPFRLITGSEDNTIAVFEGPPFKFKM 183

Query: 257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP 316
           TKQEH+RFVQAVRYSPSG+ FASAGFDGKVF+YDG S+DLV E+G+PAH+GGVY VAWKP
Sbjct: 184 TKQEHTRFVQAVRYSPSGNLFASAGFDGKVFIYDGTSSDLVGEVGSPAHQGGVYGVAWKP 243

Query: 317 DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL 376
           DGTQLLTASGDKTCKLWD+ET+S VSEF MG+ V+DQQVSCLWQ  +LL+VSLSGFI+YL
Sbjct: 244 DGTQLLTASGDKTCKLWDVETRSLVSEFNMGSTVDDQQVSCLWQDKHLLSVSLSGFINYL 303

Query: 377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           DV NP+ P+R+IKGHNKPIT L LSPDRGT++TGSHDG+IT WNAKT
Sbjct: 304 DVANPTKPLRIIKGHNKPITVLTLSPDRGTIYTGSHDGYITNWNAKT 350

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715668|ref|XP_003396331.1| PREDICTED: actin-interacting protein 1-like isoform 1 [Bombus terrestris]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/347 (86%), Positives = 331/347 (95%)

Query: 77  KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV 136
           +T+YIFATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+DIYTEHSC VNV
Sbjct: 4   ETKYIFATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIDNPAIADIYTEHSCPVNV 63

Query: 137 AKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 196
           AKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG
Sbjct: 64  AKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 123

Query: 197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 256
           RERFGHVFM+ETGTSVGEISGQSKPINSCDF+P+RPFR+ITGSEDNTIAVFEGPPFKFKM
Sbjct: 124 RERFGHVFMAETGTSVGEISGQSKPINSCDFRPTRPFRLITGSEDNTIAVFEGPPFKFKM 183

Query: 257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP 316
           TKQEH+RFVQAVRYSPSG+ FASAGFDGKVF+YDG S+DLV E+G+PAH+GGVY VAWKP
Sbjct: 184 TKQEHTRFVQAVRYSPSGNLFASAGFDGKVFIYDGTSSDLVGEVGSPAHQGGVYGVAWKP 243

Query: 317 DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL 376
           DGTQLLTASGDKTCKLWD+ET+S VSEF MG+ V+DQQVSCLWQ  +LL+VSLSGFI+YL
Sbjct: 244 DGTQLLTASGDKTCKLWDVETRSLVSEFNMGSTVDDQQVSCLWQDKHLLSVSLSGFINYL 303

Query: 377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           D+ NP+ P+R+IKGHNKPIT L LSPDRGT++TGSHDG+IT WNAKT
Sbjct: 304 DIANPTKPLRIIKGHNKPITVLTLSPDRGTIYTGSHDGYITNWNAKT 350

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715670|ref|XP_003396332.1| PREDICTED: actin-interacting protein 1-like isoform 2 [Bombus terrestris]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/347 (86%), Positives = 331/347 (95%)

Query: 77  KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV 136
           +T+YIFATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+DIYTEHSC VNV
Sbjct: 4   ETKYIFATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIDNPAIADIYTEHSCPVNV 63

Query: 137 AKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 196
           AKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG
Sbjct: 64  AKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 123

Query: 197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 256
           RERFGHVFM+ETGTSVGEISGQSKPINSCDF+P+RPFR+ITGSEDNTIAVFEGPPFKFKM
Sbjct: 124 RERFGHVFMAETGTSVGEISGQSKPINSCDFRPTRPFRLITGSEDNTIAVFEGPPFKFKM 183

Query: 257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP 316
           TKQEH+RFVQAVRYSPSG+ FASAGFDGKVF+YDG S+DLV E+G+PAH+GGVY VAWKP
Sbjct: 184 TKQEHTRFVQAVRYSPSGNLFASAGFDGKVFIYDGTSSDLVGEVGSPAHQGGVYGVAWKP 243

Query: 317 DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL 376
           DGTQLLTASGDKTCKLWD+ET+S VSEF MG+ V+DQQVSCLWQ  +LL+VSLSGFI+YL
Sbjct: 244 DGTQLLTASGDKTCKLWDVETRSLVSEFNMGSTVDDQQVSCLWQDKHLLSVSLSGFINYL 303

Query: 377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           D+ NP+ P+R+IKGHNKPIT L LSPDRGT++TGSHDG+IT WNAKT
Sbjct: 304 DIANPTKPLRIIKGHNKPITVLTLSPDRGTIYTGSHDGYITNWNAKT 350

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853060|ref|XP_003702042.1| PREDICTED: actin-interacting protein 1-like [Megachile rotundata]

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/347 (86%), Positives = 331/347 (95%)

Query: 77  KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV 136
           +T+YIFATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+DIYTEHSC VNV
Sbjct: 4   ETKYIFATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIDNPAIADIYTEHSCPVNV 63

Query: 137 AKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 196
           AKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG
Sbjct: 64  AKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 123

Query: 197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 256
           RERFGHVFM+ETGTSVGEISGQSKPINSCDF+P+RPFR+ITGSEDNTIAVFEGPPFKFKM
Sbjct: 124 RERFGHVFMAETGTSVGEISGQSKPINSCDFRPARPFRLITGSEDNTIAVFEGPPFKFKM 183

Query: 257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP 316
           TKQEH+RFVQAVRYSPSG+ FASAGFDGKVF+YDG S+DLV E+G+PAH+GGVY VAWKP
Sbjct: 184 TKQEHTRFVQAVRYSPSGNLFASAGFDGKVFIYDGTSSDLVGEVGSPAHQGGVYGVAWKP 243

Query: 317 DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL 376
           DGTQLLTASGDKTCKLWD+ET+S VSEF MG+ V+DQQVSCLWQG++LL+VSLSGFI+YL
Sbjct: 244 DGTQLLTASGDKTCKLWDVETRSLVSEFNMGSTVDDQQVSCLWQGNHLLSVSLSGFINYL 303

Query: 377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           DV+NP+ PIR+IKGHNKPIT L LS DR T++TGSHDG+IT WNA T
Sbjct: 304 DVDNPAKPIRIIKGHNKPITVLTLSSDRSTIYTGSHDGYITNWNATT 350

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088693|ref|XP_975005.1| PREDICTED: similar to wd-repeat protein [Tribolium castaneum]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/361 (83%), Positives = 331/361 (91%), Gaps = 2/361 (0%)

Query: 63  FTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA 122
           F  S D   T  N+  E I+ATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPA
Sbjct: 3   FASSCDNQATPCNS--ESIYATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIQNPA 60

Query: 123 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 182
           I+D+YTEHSC VNVAKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIA
Sbjct: 61  IADVYTEHSCPVNVAKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 120

Query: 183 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN 242
           WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKP+RPFRIITGSEDN
Sbjct: 121 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPTRPFRIITGSEDN 180

Query: 243 TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN 302
           TIAVFEGPPFKFKMTKQEHSRFVQAVRYSP+G+ FASAGFDGKVFLYDG S+DLV E+G+
Sbjct: 181 TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPTGNLFASAGFDGKVFLYDGTSSDLVGEVGS 240

Query: 303 PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD 362
           PAH GGVY V+W PDG QLLTASGDKT KLWD+ET+  VSEF++G+ VEDQQVSCLWQ +
Sbjct: 241 PAHSGGVYGVSWSPDGKQLLTASGDKTAKLWDVETRQVVSEFVLGSTVEDQQVSCLWQNE 300

Query: 363 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 422
           YLLTVSLSGFI+YLD+N+P+ P+RV+KGHNKPIT L LS DRGT+FTGSHDG +TRWNA+
Sbjct: 301 YLLTVSLSGFINYLDINDPTKPLRVVKGHNKPITVLELSEDRGTIFTGSHDGNVTRWNAE 360

Query: 423 T 423
           T
Sbjct: 361 T 361

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719145|ref|XP_001943831.2| PREDICTED: actin-interacting protein 1-like isoform 1 [Acyrthosiphon pisum]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/343 (86%), Positives = 327/343 (95%)

Query: 79  EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAK 138
           +YI++TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR+IENPAISD+YTEHSCAVNVAK
Sbjct: 6   KYIYSTLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRDIENPAISDVYTEHSCAVNVAK 65

Query: 139 YSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE 198
           YSPSGFYIASGD SGK+RIWDTVNKEHILKNEFHP GGPIKDI+WSPDNQRMVVVGEGRE
Sbjct: 66  YSPSGFYIASGDQSGKIRIWDTVNKEHILKNEFHPFGGPIKDISWSPDNQRMVVVGEGRE 125

Query: 199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK 258
           RFGHVFM+ETGTSVGEI+GQSKPINSCDF+PSRPFRI+TGSEDNTI VFEGPPFKFKMTK
Sbjct: 126 RFGHVFMAETGTSVGEITGQSKPINSCDFRPSRPFRIVTGSEDNTIGVFEGPPFKFKMTK 185

Query: 259 QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG 318
           Q+HSRFVQAVR+SP+G+ FASAGFDGKVFLY+G +ADLVSE+G+PAHKGGVY VAW  D 
Sbjct: 186 QDHSRFVQAVRFSPNGNFFASAGFDGKVFLYEGTNADLVSEIGSPAHKGGVYGVAWSADS 245

Query: 319 TQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDV 378
           T+LLT+SGDKTCKLWD+ETKS VSEF++GNQVEDQQVSCLWQG+YLLTVSL+GFI+YLDV
Sbjct: 246 TRLLTSSGDKTCKLWDVETKSVVSEFVIGNQVEDQQVSCLWQGNYLLTVSLNGFITYLDV 305

Query: 379 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 421
           NNP  PIR+IKGHNKPIT LALSPDR T++TGSHDG IT WNA
Sbjct: 306 NNPEKPIRIIKGHNKPITVLALSPDRSTIYTGSHDGNITNWNA 348

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719143|ref|XP_003246675.1| PREDICTED: actin-interacting protein 1-like isoform 2 [Acyrthosiphon pisum]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/343 (86%), Positives = 327/343 (95%)

Query: 79  EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAK 138
           +YI++TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR+IENPAISD+YTEHSCAVNVAK
Sbjct: 6   KYIYSTLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRDIENPAISDVYTEHSCAVNVAK 65

Query: 139 YSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE 198
           YSPSGFYIASGD SGK+RIWDTVNKEHILKNEFHP GGPIKDI+WSPDNQRMVVVGEGRE
Sbjct: 66  YSPSGFYIASGDQSGKIRIWDTVNKEHILKNEFHPFGGPIKDISWSPDNQRMVVVGEGRE 125

Query: 199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK 258
           RFGHVFM+ETGTSVGEI+GQSKPINSCDF+PSRPFRI+TGSEDNTI VFEGPPFKFKMTK
Sbjct: 126 RFGHVFMAETGTSVGEITGQSKPINSCDFRPSRPFRIVTGSEDNTIGVFEGPPFKFKMTK 185

Query: 259 QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG 318
           Q+HSRFVQAVR+SP+G+ FASAGFDGKVFLY+G +ADLVSE+G+PAHKGGVY VAW  D 
Sbjct: 186 QDHSRFVQAVRFSPNGNFFASAGFDGKVFLYEGTNADLVSEIGSPAHKGGVYGVAWSADS 245

Query: 319 TQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDV 378
           T+LLT+SGDKTCKLWD+ETKS VSEF++GNQVEDQQVSCLWQG+YLLTVSL+GFI+YLDV
Sbjct: 246 TRLLTSSGDKTCKLWDVETKSVVSEFVIGNQVEDQQVSCLWQGNYLLTVSLNGFITYLDV 305

Query: 379 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 421
           NNP  PIR+IKGHNKPIT LALSPDR T++TGSHDG IT WNA
Sbjct: 306 NNPEKPIRIIKGHNKPITVLALSPDRSTIYTGSHDGNITNWNA 348

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011670|gb|EFA08118.1| hypothetical protein TcasGA2_TC005722 [Tribolium castaneum]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/346 (85%), Positives = 326/346 (94%)

Query: 78  TEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVA 137
           ++ I+ATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+D+YTEHSC VNVA
Sbjct: 5   SKSIYATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIQNPAIADVYTEHSCPVNVA 64

Query: 138 KYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 197
           KYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR
Sbjct: 65  KYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR 124

Query: 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 257
           ERFGHVFMSETGTSVGEISGQSKPINSCDFKP+RPFRIITGSEDNTIAVFEGPPFKFKMT
Sbjct: 125 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPTRPFRIITGSEDNTIAVFEGPPFKFKMT 184

Query: 258 KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD 317
           KQEHSRFVQAVRYSP+G+ FASAGFDGKVFLYDG S+DLV E+G+PAH GGVY V+W PD
Sbjct: 185 KQEHSRFVQAVRYSPTGNLFASAGFDGKVFLYDGTSSDLVGEVGSPAHSGGVYGVSWSPD 244

Query: 318 GTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLD 377
           G QLLTASGDKT KLWD+ET+  VSEF++G+ VEDQQVSCLWQ +YLLTVSLSGFI+YLD
Sbjct: 245 GKQLLTASGDKTAKLWDVETRQVVSEFVLGSTVEDQQVSCLWQNEYLLTVSLSGFINYLD 304

Query: 378 VNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           +N+P+ P+RV+KGHNKPIT L LS DRGT+FTGSHDG +TRWNA+T
Sbjct: 305 INDPTKPLRVVKGHNKPITVLELSEDRGTIFTGSHDGNVTRWNAET 350

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790339|ref|XP_624088.2| PREDICTED: actin-interacting protein 1 [Apis mellifera]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 295/347 (85%), Positives = 328/347 (94%)

Query: 77  KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV 136
           +T+YIFATLP+TQRGQP+VLG DPKGKNFLYTNGNSVIIRNI+NPAI+DIYTEHSC VNV
Sbjct: 4   ETKYIFATLPKTQRGQPLVLGCDPKGKNFLYTNGNSVIIRNIDNPAIADIYTEHSCPVNV 63

Query: 137 AKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG 196
           AKYSPSGFYIASGD SGK+RIWDTVNKEHILKNEFHPIGGPIKDIAWS DNQRMVVVGEG
Sbjct: 64  AKYSPSGFYIASGDQSGKIRIWDTVNKEHILKNEFHPIGGPIKDIAWSFDNQRMVVVGEG 123

Query: 197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM 256
           RERFGHVFM+ETGTSVGEISGQSKPINSCDF+P+RPFR+ITGSEDNTIAVFEGPPFKFKM
Sbjct: 124 RERFGHVFMAETGTSVGEISGQSKPINSCDFRPTRPFRLITGSEDNTIAVFEGPPFKFKM 183

Query: 257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP 316
           TKQEH+RFVQAVRYSPSG+ FASAGFDGKVF+YDG ++DL+ E+G+PAH+GGVY VAWKP
Sbjct: 184 TKQEHTRFVQAVRYSPSGNLFASAGFDGKVFIYDGINSDLIGEIGSPAHQGGVYGVAWKP 243

Query: 317 DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL 376
           DG+QLLTASGDKTCKLWDIET+S +SEF MG  V+DQQVSCLWQ  YLL+VSLSGFI+YL
Sbjct: 244 DGSQLLTASGDKTCKLWDIETRSLISEFNMGTTVDDQQVSCLWQEKYLLSVSLSGFINYL 303

Query: 377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           DV+NP+ P+R+IKGHNKPIT L LSPDR T++TGSHDG+IT WNAKT
Sbjct: 304 DVDNPTKPLRIIKGHNKPITVLTLSPDRSTIYTGSHDGYITNWNAKT 350

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
FB|FBgn0260049	608	flr "flare" [Drosophila melano	0.806	0.560	0.821	3.6e-161
UNIPROTKB|Q6DIF4	607	wdr1 "WD repeat-containing pro	0.810	0.565	0.632	3.6e-121
UNIPROTKB|Q6PAX7	607	wdr1-b "WD repeat-containing p	0.810	0.565	0.627	3.6e-121
UNIPROTKB|Q9W7F2	607	wdr1-a "WD repeat-containing p	0.810	0.565	0.624	5.2e-120
RGD|1305789	606	Wdr1 "WD repeat domain 1" [Rat	0.810	0.566	0.606	1.1e-117
MGI|MGI:1337100	606	Wdr1 "WD repeat domain 1" [Mus	0.810	0.566	0.604	6.2e-117
UNIPROTKB|Q2KJH4	606	WDR1 "WD repeat-containing pro	0.810	0.566	0.592	1e-116
UNIPROTKB|O75083	606	WDR1 "WD repeat-containing pro	0.810	0.566	0.595	4.4e-116
UNIPROTKB|O93277	609	WDR1 "WD repeat-containing pro	0.810	0.563	0.586	3.9e-115
DICTYBASE|DDB_G0278733	597	aip1 "actin-interacting protei	0.808	0.572	0.495	1.4e-97

FB|FBgn0260049 flr "flare" [Drosophila melanogaster (taxid:7227)]

 Score = 1549 (550.3 bits), Expect = 3.6e-161, Sum P(2) = 3.6e-161
 Identities = 280/341 (82%), Positives = 311/341 (91%)

Query:    81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
             I+ATLPRTQRGQPIVLG DPKGKNFLYTNGNSVIIRNIENPAI+D+YTEHSCAVNVAKYS
Sbjct:    14 IYATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRNIENPAIADVYTEHSCAVNVAKYS 73

Query:   141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
             PSGFYIASGD SGK+RIWDTVNKEH+LKNEF PI GPIKDI+WSPDNQR+V VGEGRERF
Sbjct:    74 PSGFYIASGDASGKIRIWDTVNKEHLLKNEFQPIAGPIKDISWSPDNQRIVAVGEGRERF 133

Query:   201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
             GHVFMSETGTSVGEISGQSK INS DF+P+RPFRI+TGSEDNTIAVFEGPPFKFKMTKQ+
Sbjct:   134 GHVFMSETGTSVGEISGQSKSINSADFRPARPFRIVTGSEDNTIAVFEGPPFKFKMTKQD 193

Query:   261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ 320
             HSRFVQAVRYSP G  FASAGFDGKVFLYDG S++LV E G+PAHKGGVYA+AWKPD TQ
Sbjct:   194 HSRFVQAVRYSPDGKFFASAGFDGKVFLYDGTSSELVGEFGSPAHKGGVYALAWKPDSTQ 253

Query:   321 LLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN 380
             LLT SGDKTC+LW +E++  VSEF+MG  V+DQQVSCLWQGD L+TVSLSG I+YL+V +
Sbjct:   254 LLTCSGDKTCRLWTVESRELVSEFVMGTTVDDQQVSCLWQGDNLITVSLSGVITYLNVAD 313

Query:   381 PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 421
             PS P+RV+KGHNKPIT L LS DR T++TGSHDG +T WN+
Sbjct:   314 PSKPLRVVKGHNKPITVLGLSDDRSTIYTGSHDGVVTNWNS 354

GO:0030042 "actin filament depolymerization" evidence=ISS;IMP

GO:0003779 "actin binding" evidence=ISS

GO:0008154 "actin polymerization or depolymerization" evidence=ISS

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0035317 "imaginal disc-derived wing hair organization" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

UNIPROTKB|Q6DIF4 wdr1 "WD repeat-containing protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 219/346 (63%), Positives = 271/346 (78%)

Query:    81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
             +FA+LP+ +RG   ++ GDPKG NFLYTNG SVIIRNIENPAI+DIYTEH+  V VA+Y+
Sbjct:     8 VFASLPQVERGVAKIITGDPKGNNFLYTNGKSVIIRNIENPAIADIYTEHAHPVVVARYA 67

Query:   141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
             PSGFYIASGD SGK+RIWDT  KEH+LK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct:    68 PSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query:   201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
             G VF+ +TG+SVGEISG  K INS D K +RP+R++TGS+DN  A FEGPPFKFK T  +
Sbjct:   128 GSVFLWDTGSSVGEISGNIKVINSVDIKQTRPYRLVTGSDDNCCAFFEGPPFKFKFTMAD 187

Query:   261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPDGT 319
             HSRFV  VR+SP GS  ASAG DG++FLYDG + + V  LG + AH GG+YAV+W  D T
Sbjct:   188 HSRFVNCVRFSPDGSRLASAGADGQIFLYDGKTGEKVGNLGGSKAHDGGIYAVSWSADST 247

Query:   320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
             QLL+ASGDKT K+WD+   SAV+ F +G +V DQQ+ CLWQ DYLL+VSLSG+I+YLD N
Sbjct:   248 QLLSASGDKTAKIWDVAANSAVTTFHLGTEVLDQQLGCLWQKDYLLSVSLSGYINYLDKN 307

Query:   380 NPSTPIRVIKGHNKPITALAL--SPDRGTVFTGSHDGFITRWNAKT 423
             NPS P+RVIKGHNK I  + +  S  R T++TGSHDG I  W+A+T
Sbjct:   308 NPSRPLRVIKGHNKSIQCMTVHNSDGRSTIYTGSHDGHINYWDAET 353

GO:0003779 "actin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005884 "actin filament" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0030043 "actin filament fragmentation" evidence=ISS

UNIPROTKB|Q6PAX7 wdr1-b "WD repeat-containing protein 1-B" [Xenopus laevis (taxid:8355)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 217/346 (62%), Positives = 271/346 (78%)

Query:    81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
             +FA+LP+ +RG   ++ GDPKG NFLYTNG SVIIRNI+NPAI+DIYTEH+  V VA+Y+
Sbjct:     8 VFASLPQVERGVAKIIAGDPKGNNFLYTNGKSVIIRNIDNPAIADIYTEHAHQVVVARYA 67

Query:   141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
             PSGFYIASGD SGK+RIWDT  KEH+LK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct:    68 PSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query:   201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
             G VF+ +TG+SVGEI G  K INS D K +RP+R++TGS+DN  A FEGPPFKFK T  +
Sbjct:   128 GSVFLWDTGSSVGEIIGNIKVINSVDIKQTRPYRLVTGSDDNCCAFFEGPPFKFKFTMSD 187

Query:   261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPDGT 319
             HSRFV  VR+SP GS  ASAG DG++FLYDG + + V  LG + AH GG+YAV+W PDGT
Sbjct:   188 HSRFVNCVRFSPDGSRLASAGADGQIFLYDGKTGEKVCSLGGSKAHDGGIYAVSWSPDGT 247

Query:   320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
             QLL+ASGDKT K+WD+   SAV+ F +G+ V DQQ+ CLWQ DYLL+VSLSG+I+YLD N
Sbjct:   248 QLLSASGDKTAKIWDVAANSAVTTFNLGSDVLDQQLGCLWQKDYLLSVSLSGYINYLDKN 307

Query:   380 NPSTPIRVIKGHNKPITALAL--SPDRGTVFTGSHDGFITRWNAKT 423
             NP+ P R+IKGHNK I  + +  S  R T++TGSHDG I  W+A+T
Sbjct:   308 NPAKPFRIIKGHNKSIQCMTVDKSDGRSTIYTGSHDGHINYWDAET 353

GO:0003779 "actin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005884 "actin filament" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0030043 "actin filament fragmentation" evidence=ISS

UNIPROTKB|Q9W7F2 wdr1-a "WD repeat-containing protein 1-A" [Xenopus laevis (taxid:8355)]

 Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
 Identities = 216/346 (62%), Positives = 270/346 (78%)

Query:    81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
             +FA+LP+ +RG   +L GDPKG NFLYTNG SVIIRNI+NPAI+DIYTEH+    VA+Y+
Sbjct:     8 VFASLPQMERGVAKILAGDPKGNNFLYTNGKSVIIRNIDNPAIADIYTEHAHQAVVARYA 67

Query:   141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
             PSGFYIASGD SGK+RIWDT  KEH+LK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct:    68 PSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query:   201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
               VF+ +TG+SVGEI+G  K INS D K +RP+R++TGS+DN  A  EGPPFKFK T  +
Sbjct:   128 ASVFLWDTGSSVGEITGNIKVINSVDIKQTRPYRLVTGSDDNCCAFLEGPPFKFKFTMSD 187

Query:   261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPDGT 319
             HSRFV  VR+SP GS  ASAG DG++FLYDG + + V  LG + AH GG+YAV+W PDGT
Sbjct:   188 HSRFVNCVRFSPDGSKLASAGADGQIFLYDGKTGEKVCSLGGSKAHDGGIYAVSWSPDGT 247

Query:   320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
             QLL+ASGDKT K+WD+   SAV+ F +G+ V DQQ+ CLWQ DYLL+VSLSG+I+YLD N
Sbjct:   248 QLLSASGDKTTKIWDVAANSAVTTFNLGSDVLDQQLGCLWQKDYLLSVSLSGYINYLDKN 307

Query:   380 NPSTPIRVIKGHNKPITALAL--SPDRGTVFTGSHDGFITRWNAKT 423
             NP+ P+RVIKGHNK I  + +  S  R T++TGSHDG I  W+A+T
Sbjct:   308 NPARPLRVIKGHNKSIQCMTVNNSDGRSTIYTGSHDGHINYWDAET 353

GO:0003779 "actin binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030043 "actin filament fragmentation" evidence=IDA

RGD|1305789 Wdr1 "WD repeat domain 1" [Rattus norvegicus (taxid:10116)]

 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 210/346 (60%), Positives = 270/346 (78%)

Query:    81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
             +FA+LP+ +RG   +LGGDPKG NFLYTNG  VI+RNI+NPA++DIYTEH+  V VAKY+
Sbjct:     8 VFASLPQVERGVSKILGGDPKGDNFLYTNGKCVILRNIDNPAVADIYTEHAHQVVVAKYA 67

Query:   141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
             PSGFYIASGDISGK+RIWDT  KEHILK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct:    68 PSGFYIASGDISGKLRIWDTTQKEHILKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query:   201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
             G VF+ +TG+SVGEI+G +K INS D K +RP+R+ TGS+DN  A FEGPPFKFK T  +
Sbjct:   128 GAVFLWDTGSSVGEITGHNKVINSVDIKQNRPYRLATGSDDNCAAFFEGPPFKFKFTIGD 187

Query:   261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPDGT 319
             HSRFV  VR+SP G+ FA+A  DG++F+YDG + + V  LG + AH GG+YA++W PD T
Sbjct:   188 HSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYAISWSPDST 247

Query:   320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
              LL+ASGDKT K+WD+   S VS F MG+ V DQQ+ CLWQ D+LL++SLSG+I+YLD N
Sbjct:   248 HLLSASGDKTSKIWDVNVNSVVSTFPMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKN 307

Query:   380 NPSTPIRVIKGHNKPITALALSPDRGT--VFTGSHDGFITRWNAKT 423
             NPS P+RVIKGH+K I  L +  + G   +++GSHDG I  W+++T
Sbjct:   308 NPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET 353

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

MGI|MGI:1337100 Wdr1 "WD repeat domain 1" [Mus musculus (taxid:10090)]

 Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
 Identities = 209/346 (60%), Positives = 270/346 (78%)

Query:    81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
             +FA+LP+ +RG   +LGGDPKG +FLYTNG  VI+RNI+NPAI+DIYTEH+  V VAKY+
Sbjct:     8 VFASLPQVERGVSKILGGDPKGDHFLYTNGKCVILRNIDNPAIADIYTEHAHQVVVAKYA 67

Query:   141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
             PSGFYIASGDISGK+RIWDT  KEH+LK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct:    68 PSGFYIASGDISGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query:   201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
             G VF+ +TG+SVGEI+G +K INS D K +RP+R+ TGS+DN  A FEGPPFKFK T  +
Sbjct:   128 GAVFLWDTGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPFKFKFTIGD 187

Query:   261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPDGT 319
             HSRFV  VR+SP G+ FA+A  DG++F+YDG + + V  LG + AH GG+YA++W PD T
Sbjct:   188 HSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGESKAHDGGIYAISWSPDST 247

Query:   320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
              LL+ASGDKT K+WD+   S VS F MG+ V DQQ+ CLWQ D+LL++SLSG+I+YLD N
Sbjct:   248 HLLSASGDKTSKIWDVNVNSVVSTFPMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKN 307

Query:   380 NPSTPIRVIKGHNKPITALALSPDRGT--VFTGSHDGFITRWNAKT 423
             NPS P+RVIKGH+K I  L +  + G   +++GSHDG I  W+++T
Sbjct:   308 NPSKPLRVIKGHSKSIQCLTVHRNGGKSYIYSGSHDGHINYWDSET 353

GO:0003779 "actin binding" evidence=ISA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=ISA

GO:0015629 "actin cytoskeleton" evidence=ISA

UNIPROTKB|Q2KJH4 WDR1 "WD repeat-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
 Identities = 205/346 (59%), Positives = 270/346 (78%)

Query:    81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
             +FA+LP+ +RG   ++GGDPKG +FLYTNG  VI+RNI+NPAI+DIYTEH+  V VAKY+
Sbjct:     8 VFASLPQVERGVSKIVGGDPKGNSFLYTNGKCVILRNIDNPAIADIYTEHAHQVVVAKYA 67

Query:   141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
             PSGFYIASGD+SGK+RIWDT  KEH+LK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct:    68 PSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query:   201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
             G VF+ ++G+SVGEI+G +K INS D K SRP+R++TGS+DN  A FEGPPFKFK T  +
Sbjct:   128 GAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLVTGSDDNCAAFFEGPPFKFKFTISD 187

Query:   261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPDGT 319
             H RFV  VR+SP G+ FA+A  DG++F+YDG + + V  LG + AH GG+YA++W PD T
Sbjct:   188 HGRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYAISWSPDST 247

Query:   320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
              LL+ASGDKT K+WD+   S V+ F MG+ V DQQ+ CLWQ D+LL++SLSG+I+YLD N
Sbjct:   248 HLLSASGDKTSKIWDVNVNSVVNTFTMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKN 307

Query:   380 NPSTPIRVIKGHNKPITALALSPDRGT--VFTGSHDGFITRWNAKT 423
             NPS P+RVIKGH+K I  L +  + G   +++GSHDG I  W+++T
Sbjct:   308 NPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET 353

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|O75083 WDR1 "WD repeat-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
 Identities = 206/346 (59%), Positives = 269/346 (77%)

Query:    81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
             +FA+LP+ +RG   ++GGDPKG NFLYTNG  VI+RNI+NPA++DIYTEH+  V VAKY+
Sbjct:     8 VFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQVVVAKYA 67

Query:   141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
             PSGFYIASGD+SGK+RIWDT  KEH+LK E+ P  G IKDIAW+ D++R+ VVGEGRE+F
Sbjct:    68 PSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKF 127

Query:   201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
             G VF+ ++G+SVGEI+G +K INS D K SRP+R+ TGS+DN  A FEGPPFKFK T  +
Sbjct:   128 GAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGD 187

Query:   261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPDGT 319
             HSRFV  VR+SP G+ FA+A  DG++++YDG + + V  LG + AH GG+YA++W PD T
Sbjct:   188 HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAISWSPDST 247

Query:   320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
              LL+ASGDKT K+WD+   S VS F MG+ V DQQ+ CLWQ D+LL+VSLSG+I+YLD N
Sbjct:   248 HLLSASGDKTSKIWDVSVNSVVSTFPMGSTVLDQQLGCLWQKDHLLSVSLSGYINYLDRN 307

Query:   380 NPSTPIRVIKGHNKPITALALSPDRGT--VFTGSHDGFITRWNAKT 423
             NPS P+ VIKGH+K I  L +  + G   +++GSHDG I  W+++T
Sbjct:   308 NPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET 353

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=TAS

GO:0002576 "platelet degranulation" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

UNIPROTKB|O93277 WDR1 "WD repeat-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
 Identities = 203/346 (58%), Positives = 268/346 (77%)

Query:    81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
             +FA+LP+ +RG   ++GGDPKG NFLYTNG  V+IRNI+NPAI+DIYTEH+  V VAKY+
Sbjct:    10 VFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVVIRNIDNPAIADIYTEHAHQVVVAKYA 69

Query:   141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
             PSGFYIASGD+SGK+RIWDT  KEH+LK E+ P  G IKD+AW+ D++R+ VVGEGRE+F
Sbjct:    70 PSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDLAWTEDSKRIAVVGEGREKF 129

Query:   201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
             G VF+ ++G+SVGEI+G +K INS D K +RP+R+ TGS+DN  A FEGPPFKFK T  +
Sbjct:   130 GAVFLWDSGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPFKFKFTLSD 189

Query:   261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN-PAHKGGVYAVAWKPDGT 319
             H+RFV  VR+SP G+ FA+A  DG++F+YDG + + V  LG   AH GG+YA++W PD +
Sbjct:   190 HTRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGGKAHDGGIYAISWSPDSS 249

Query:   320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN 379
             QLL+ASGDKT K+WD+   S VS F MG+ V DQQ+ CLWQ D+LL++SLSG+I+YLD N
Sbjct:   250 QLLSASGDKTAKIWDVGANSVVSTFNMGSNVLDQQLGCLWQKDHLLSLSLSGYINYLDKN 309

Query:   380 NPSTPIRVIKGHNKPITALALSPDRGT--VFTGSHDGFITRWNAKT 423
             NP  P+RVIKGH+K I  L +  + G   +++GS+DG I  W++ T
Sbjct:   310 NPDKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSNDGHINYWDSDT 355

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0278733 aip1 "actin-interacting protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 946 (338.1 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
 Identities = 172/347 (49%), Positives = 241/347 (69%)

Query:    81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
             I A  P T RG+ + + GDPKG+N +Y +G+S+IIRN++NP ++DIY EH C   VAKY+
Sbjct:     8 IIAPTPATTRGKSVAINGDPKGENIVYASGSSIIIRNVKNPMVADIYYEHPCQTTVAKYA 67

Query:   141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
             PSG YIASGD+ G +RIWDT+ KEHILK  +  + G I DIAW+ DNQR+VVVG+G+ERF
Sbjct:    68 PSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLNGAILDIAWTSDNQRLVVVGDGKERF 127

Query:   201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK--MTK 258
             G   + ++G+S GEI+G SK I SCD K +RPFR  TGSED  +  FEGPPFKF+  +  
Sbjct:   128 GAAILWDSGSSCGEITGHSKMILSCDIKSTRPFRAATGSEDFAVNWFEGPPFKFQKNIAA 187

Query:   259 QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA--HKGGVYAVAWKP 316
              + +RFV  VR+SP G+   + G D K F+YDG + + + EL NPA  H GG+Y  +W  
Sbjct:   188 GDFTRFVNCVRFSPDGNKLVTVGADKKAFVYDGKTGEKLIEL-NPAQQHTGGIYGCSWSA 246

Query:   317 DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL 376
             D  ++LTAS DK+CK+WD  T   ++ F  G+ V DQQ+ CLW GD LL+V+L+G IS L
Sbjct:   247 DNNRVLTASADKSCKIWDTTTGQCINSFTFGSDVNDQQLGCLWFGDSLLSVNLAGEISTL 306

Query:   377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
             ++++ + P RVIKGHNK +  +A   + G++++ S+D  + +W+  T
Sbjct:   307 NLDDVAKPSRVIKGHNKLVGTIAFDKNAGSLYSASYDASLLQWDLST 353

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0043327 "chemotaxis to cAMP" evidence=IGI

GO:0030041 "actin filament polymerization" evidence=IGI

GO:0030010 "establishment of cell polarity" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0031252 "cell leading edge" evidence=IDA

GO:0060187 "cell pole" evidence=IDA

GO:0042641 "actomyosin" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0030042 "actin filament depolymerization" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0006907 "pinocytosis" evidence=IMP

GO:0001891 "phagocytic cup" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O75083	WDR1_HUMAN	No assigned EC number	0.5953	0.8108	0.5660	yes	N/A
Q6DIF4	WDR1_XENTR	No assigned EC number	0.6329	0.8108	0.5650	yes	N/A
Q9VU68	WDR1_DROME	No assigned EC number	0.8211	0.7399	0.5148	yes	N/A
O93277	WDR1_CHICK	No assigned EC number	0.5867	0.8108	0.5632	yes	N/A
Q2KJH4	WDR1_BOVIN	No assigned EC number	0.5924	0.8108	0.5660	yes	N/A
Q5RKI0	WDR1_RAT	No assigned EC number	0.6069	0.8108	0.5660	yes	N/A
O88342	WDR1_MOUSE	No assigned EC number	0.6040	0.8108	0.5660	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	423
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-56
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-42
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-37
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-36
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-25
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-08
smart00320	40	smart00320, WD40, WD40 repeats	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-05
smart00320	40	smart00320, WD40, WD40 repeats	8e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
pfam08662	194	pfam08662, eIF2A, Eukaryotic translation initiatio	9e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  186 bits (474), Expect = 5e-56
 Identities = 86/300 (28%), Positives = 144/300 (48%), Gaps = 15/300 (5%)

Query: 124 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 183
                 H+  V    +SP G  +A+G   G +++WD    E +   + H   GP++D+A 
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT--GPVRDVAA 59

Query: 184 SPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT 243
           S D   +       ++   ++  ETG  V  ++G +  ++S  F P     + + S D T
Sbjct: 60  SADGTYLASGSS--DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI-LSSSSRDKT 116

Query: 244 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP 303
           I V++    K   T + H+ +V +V +SP G+  AS+  DG + L+D  +   V+ L   
Sbjct: 117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL--T 174

Query: 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---Q 360
            H G V +VA+ PDG +LL++S D T KLWD+ T   +       +  +  V+ +     
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL----RGHENGVNSVAFSPD 230

Query: 361 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           G  L + S  G I   D+      ++ + GH   +T+LA SPD   + +GS DG I  W+
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  149 bits (379), Expect = 4e-42
 Identities = 76/320 (23%), Positives = 126/320 (39%), Gaps = 50/320 (15%)

Query: 15  QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 74
            G  L T S  G I   D+      +R +KGH  P+  +A S D   + +GS D  I  W
Sbjct: 20  DGKLLATGSGDGTIKVWDLETG-ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78

Query: 75  NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV 134
           + +T     T                                           T H+  V
Sbjct: 79  DLETGECVRT------------------------------------------LTGHTSYV 96

Query: 135 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG 194
           +   +SP G  ++S      +++WD    +             +  +A+SPD     V  
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSPDGT--FVAS 152

Query: 195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF 254
             ++    ++   TG  V  ++G +  +NS  F P    ++++ S D TI +++    K 
Sbjct: 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKC 211

Query: 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 314
             T + H   V +V +SP G   AS   DG + ++D  + + V  L    H   V ++AW
Sbjct: 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL--SGHTNSVTSLAW 269

Query: 315 KPDGTQLLTASGDKTCKLWD 334
            PDG +L + S D T ++WD
Sbjct: 270 SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  136 bits (344), Expect = 5e-37
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 9/215 (4%)

Query: 211 SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRY 270
               + G +  +    F P     + TGS D TI V++    +   T + H+  V+ V  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 271 SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC 330
           S  G++ AS   D  + L+D  + + V  L    H   V +VA+ PDG  L ++S DKT 
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVRTLT--GHTSYVSSVAFSPDGRILSSSSRDKTI 117

Query: 331 KLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD--YLLTVSLSGFISYLDVNNPSTPIRVI 388
           K+WD+ET   ++         D   S  +  D  ++ + S  G I   D+      +  +
Sbjct: 118 KVWDVETGKCLTTL---RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATL 173

Query: 389 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
            GH   + ++A SPD   + + S DG I  W+  T
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  138 bits (347), Expect = 2e-36
 Identities = 108/418 (25%), Positives = 184/418 (44%), Gaps = 18/418 (4%)

Query: 16  GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
           G     + L   +S   V+ P     +++GH   IT++A SPD   + +GS DG I  W+
Sbjct: 34  GSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWD 93

Query: 76  AKTEYIFATLPRTQRGQPI--VLGGDPKGKNFLYTNG---NSVIIRNIENPA-ISDIYTE 129
                             +  +    P G + L  +     +V + ++  P  +      
Sbjct: 94  LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG 153

Query: 130 HSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 188
           HS +V    +SP G  +ASG  + G +++WD    + +     H    P+  +A+SPD  
Sbjct: 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT--DPVSSLAFSPDGG 211

Query: 189 RMVVVGEGRERFGHVFMSETGTSV-GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 247
            ++      +    ++   TG  +   +SG S  + S  F P     + +GS D TI ++
Sbjct: 212 LLIA-SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSL-LASGSSDGTIRLW 268

Query: 248 E-GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHK 306
           +         T   HS  V +V +SP G   AS   DG V L+D  +  L+S L    H+
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE 328

Query: 307 GGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLL 365
           G V ++++ PDG+ L++  S D T +LWD+ T   +      + V     S    G  + 
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFS--PDGRVVS 386

Query: 366 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           + S  G +   D++   + +R + GH   +T+L  SPD  ++ +GS D  I  W+ KT
Sbjct: 387 SGSTDGTVRLWDLST-GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  109 bits (271), Expect = 6e-26
 Identities = 70/334 (20%), Positives = 132/334 (39%), Gaps = 50/334 (14%)

Query: 93  PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS 152
            ++  G  +    L    +  ++   +    S +   H  ++    +SP G  + SG   
Sbjct: 29  SLLSLGSSESGILLLALLSDSLVSLPD--LSSLLLRGHEDSITSIAFSPDGELLLSGSSD 86

Query: 153 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAW-SPDNQRMVVVGEGRERFGHVFMSET-GT 210
           G +++WD  N E ++K+        +  +A  SPD   +++     +    ++   T G 
Sbjct: 87  GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK 146

Query: 211 SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRY 270
            +  + G S+ + S  F P         S D TI +++    K   T   H+  V ++ +
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206

Query: 271 SPSGS-HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT 329
           SP G    AS   DG + L+D ++  L+       H   V + ++ PDG+ L + S D T
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRST-LSGHSDSVVS-SFSPDGSLLASGSSDGT 264

Query: 330 CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK 389
            +LWD+ + S                                           + +R + 
Sbjct: 265 IRLWDLRSSS-------------------------------------------SLLRTLS 281

Query: 390 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           GH+  + ++A SPD   + +GS DG +  W+ +T
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  108 bits (269), Expect = 1e-25
 Identities = 90/334 (26%), Positives = 154/334 (46%), Gaps = 16/334 (4%)

Query: 18  YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH-DGFITRWNA 76
            L + SL G +   D++ P   IR ++GH++ +T+LA SPD   + +GS  DG I  W+ 
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Query: 77  KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG--NSVIIRNIENPA-ISDIYTEHSCA 133
           +T    +TL          L   P G   + +     ++ + ++     +    + HS  
Sbjct: 186 RTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-D 243

Query: 134 VNVAKYSPSGFYIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMVV 192
             V+ +SP G  +ASG   G +R+WD  +    +     H     +  +A+SPD + +  
Sbjct: 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFSPDGKLLAS 301

Query: 193 VGEGRERFGHVFMSETGTSVGEIS--GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP 250
                +    ++  ETG  +  ++  G   P++S  F P     +  GS+D TI +++  
Sbjct: 302 GSS--DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Query: 251 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY 310
             K   T + HS  V +V +SP G   +S   DG V L+D ++  L+  L    H   V 
Sbjct: 360 TGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG--HTSRVT 416

Query: 311 AVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF 344
           ++ + PDG  L + S D T +LWD++T      F
Sbjct: 417 SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 7/188 (3%)

Query: 10  VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG 69
           V+    G  L + S    I   DV      +  ++GH   + ++A SPD   V + S DG
Sbjct: 99  VAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 70  FITRWNAKTEYIFATLP-RTQRGQPIVLGGDPKGKNFLYTNGNSVI-IRNIENPAISDIY 127
            I  W+ +T    ATL   T     +     P G+  L ++ +  I + ++         
Sbjct: 158 TIKLWDLRTGKCVATLTGHTGEVNSVAF--SPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215

Query: 128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 187
             H   VN   +SP G+ +ASG   G +R+WD    E +     H     +  +AWSPD 
Sbjct: 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDG 273

Query: 188 QRMVVVGE 195
           +R+     
Sbjct: 274 KRLASGSA 281

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 75.9 bits (185), Expect = 7e-15
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 48/241 (19%)

Query: 6   EDQQVSCL-WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFT 64
            D  VS     G  L + S  G I   D+ + S+ +R + GH+  + ++A SPD   + +
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301

Query: 65  GSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS 124
           GS DG +  W+ +T  + ++L                                       
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLT-------------------------------------- 323

Query: 125 DIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 183
                H   V+   +SP G  + SG    G +R+WD    + +   E H     +  +++
Sbjct: 324 --LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH---SNVLSVSF 378

Query: 184 SPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT 243
           SPD + +       +    ++   TG+ +  + G +  + S DF P     + +GS DNT
Sbjct: 379 SPDGRVVSSGST--DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS-LASGSSDNT 435

Query: 244 I 244
           I
Sbjct: 436 I 436

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.3 bits (134), Expect = 1e-08
 Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 9/164 (5%)

Query: 10  VSCLWQGDYLLTVSLSGFISYLDVNNPSTP-IRVIKGHNKPITALALSPDRGTVFTG-SH 67
           V+    G  L + S  G +   D+          +KGH  P+++L+ SPD   + +G S 
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Query: 68  DGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG---NSVIIRNIENPAIS 124
           DG I  W+ +T     TL         VL         + ++G    +V + ++   ++ 
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSN----VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405

Query: 125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 168
                H+  V    +SP G  +ASG     +R+WD       + 
Sbjct: 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
            H G V +VA+ PDG  L + S D T ++WD
Sbjct: 9   GHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 303 PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
             H G V +VA+ PDG  L + S D T KLWD
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 36 PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
              ++ +KGH  P+T++A SPD   + +GS DG I  W+
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 381 PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
               ++ +KGH  P+T++A SPD   + +GS DG I  W+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 13/151 (8%)

Query: 275 SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW-KPDGTQLLTASGDKTCKLW 333
           S  AS+ F+G V ++D A + LV+E+    H+  V+++ +   D T L + S D + KLW
Sbjct: 546 SQVASSNFEGVVQVWDVARSQLVTEMKE--HEKRVWSIDYSSADPTLLASGSDDGSVKLW 603

Query: 334 DIETKSAVSEFLMGNQVEDQQVSCLW----QGDYLLTVSLSGFISYLDVNNPSTPIRVIK 389
            I    ++     G       + C+      G  L   S    + Y D+ NP  P+  + 
Sbjct: 604 SINQGVSI-----GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658

Query: 390 GHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           GH+K ++ +    D  T+ + S D  +  W+
Sbjct: 659 GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
            +R +KGH  P+T++A SPD   + +GS DG +  W+
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 383 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
             +R +KGH  P+T++A SPD   + +GS DG +  W+
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 251 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD 290
             +   T + H+  V +V +SP G + AS   DG + L+D
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 252 FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD 290
            K   T + H+  V +V +SP G+  AS   DG V ++D
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 20/167 (11%)

Query: 217 GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-------QEHSRFVQAVR 269
           GQ  PI    F P  P ++ T SED TI  +  P               Q H++ V  V 
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 270 YSPSGSH-FASAGFDGKVFLYD---GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325
           + PS  +  ASAG D  V ++D   G + +++       H   + ++ W  DG+ L T S
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-----CHSDQITSLEWNLDGSLLCTTS 187

Query: 326 GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYLLTVSLS 370
            DK   + D    + VS        + Q+  CLW  + D ++T+  S
Sbjct: 188 KDKKLNIIDPRDGTIVSSVEAHASAKSQR--CLWAKRKDLIITLGCS 232

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 126 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 159
               H+  V    +SP G Y+ASG   G +++WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 126 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 159
               H+  V    +SP G  +ASG   G VR+WD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 100 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS---GDISGKVR 156
           P GK F    G         +   + I++      N   +SP G  +     G+++G++ 
Sbjct: 69  PNGKEFAVIYGYMPAKITFFDLKGNVIHSLGEQPRNTIFWSPFGRLVLLAGFGNLAGQIE 128

Query: 157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 188
            WD  NK+ I   E         D  WSPD +
Sbjct: 129 FWDVKNKKKIATAE-ASNA---TDCEWSPDGR 156

This is a family of eukaryotic translation initiation factors. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	423
KOG0318|consensus	603		100.0
KOG0271|consensus	480		100.0
KOG0271|consensus	480		100.0
KOG0319|consensus	775		100.0
KOG0291|consensus	893		100.0
KOG0272|consensus	459		100.0
KOG0272|consensus	459		100.0
KOG0318|consensus	603		100.0
KOG0319|consensus	775		100.0
KOG0315|consensus	311		100.0
KOG0291|consensus	893		100.0
KOG0279|consensus	315		100.0
KOG0286|consensus	343		100.0
KOG0645|consensus	312		100.0
KOG0296|consensus	399		100.0
KOG0306|consensus	888		100.0
KOG0306|consensus	888		100.0
KOG0293|consensus	519		100.0
KOG0273|consensus	524		100.0
KOG0295|consensus	406		100.0
KOG0265|consensus	338		100.0
KOG0279|consensus	315		100.0
KOG0273|consensus	524		100.0
KOG0263|consensus	707		100.0
KOG0643|consensus	327		100.0
KOG0284|consensus	464		100.0
KOG0282|consensus	503		100.0
KOG0295|consensus	406		100.0
KOG0284|consensus	464		100.0
KOG0286|consensus	343		100.0
KOG0266|consensus	456		100.0
KOG0315|consensus	311		100.0
KOG0313|consensus	423		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0285|consensus	460		100.0
KOG0640|consensus	430		100.0
KOG0281|consensus	499		100.0
KOG0263|consensus	707		100.0
KOG0282|consensus	503		100.0
KOG1539|consensus	910		100.0
KOG0265|consensus	338		100.0
KOG0292|consensus	1202		100.0
KOG0293|consensus	519		100.0
KOG0296|consensus	399		100.0
KOG0266|consensus	456		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0645|consensus	312		100.0
KOG0316|consensus	307		100.0
KOG0275|consensus	508		100.0
KOG1408|consensus	1080		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0278|consensus	334		100.0
KOG0275|consensus	508		100.0
KOG0281|consensus	499		100.0
KOG0285|consensus	460		100.0
KOG0276|consensus	794		100.0
KOG0292|consensus	1202		100.0
KOG1407|consensus	313		100.0
KOG2106|consensus	626		100.0
KOG1063|consensus	764		99.98
KOG1446|consensus	311		99.98
KOG0316|consensus	307		99.98
KOG0277|consensus	311		99.97
KOG1063|consensus	764		99.97
KOG0276|consensus	794		99.97
KOG0288|consensus	459		99.97
KOG0772|consensus	641		99.97
KOG0643|consensus	327		99.97
KOG0274|consensus	537		99.97
KOG0283|consensus	712		99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0268|consensus	433		99.97
KOG0283|consensus	712		99.97
KOG0305|consensus	484		99.97
KOG0278|consensus	334		99.97
KOG0277|consensus	311		99.97
KOG0973|consensus	942		99.97
KOG1407|consensus	313		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0313|consensus	423		99.97
KOG0289|consensus	506		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG2096|consensus	420		99.97
KOG0300|consensus	481		99.97
KOG0274|consensus	537		99.97
KOG0650|consensus	733		99.96
PTZ00420	568	coronin; Provisional	99.96
KOG1539|consensus	910		99.96
KOG1332|consensus	299		99.96
KOG0973|consensus	942		99.96
KOG0310|consensus	487		99.96
KOG0288|consensus	459		99.96
KOG2106|consensus	626		99.96
KOG0641|consensus	350		99.96
PTZ00420	568	coronin; Provisional	99.96
KOG4283|consensus	397		99.96
KOG0299|consensus	479		99.96
KOG0268|consensus	433		99.96
KOG1332|consensus	299		99.96
KOG0640|consensus	430		99.96
KOG1408|consensus	1080		99.96
KOG2096|consensus	420		99.96
KOG0308|consensus	735		99.96
KOG0647|consensus	347		99.95
KOG0310|consensus	487		99.95
KOG1446|consensus	311		99.95
KOG0641|consensus	350		99.95
KOG2048|consensus	691		99.95
KOG2445|consensus	361		99.95
KOG0305|consensus	484		99.95
KOG0294|consensus	362		99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0299|consensus	479		99.94
KOG0264|consensus	422		99.94
KOG0321|consensus	720		99.94
KOG0294|consensus	362		99.94
KOG0772|consensus	641		99.94
KOG0647|consensus	347		99.93
KOG0308|consensus	735		99.93
KOG0289|consensus	506		99.93
KOG0264|consensus	422		99.93
KOG0301|consensus	745		99.93
KOG0301|consensus	745		99.93
KOG0300|consensus	481		99.93
KOG0639|consensus	705		99.93
KOG1273|consensus	405		99.93
KOG4328|consensus	498		99.92
KOG1963|consensus	792		99.92
KOG0646|consensus	476		99.92
KOG0269|consensus	839		99.92
KOG0650|consensus	733		99.92
KOG0646|consensus	476		99.92
KOG0267|consensus	825		99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG2055|consensus	514		99.92
KOG1274|consensus	933		99.92
KOG1036|consensus	323		99.92
KOG0267|consensus	825		99.91
KOG0302|consensus	440		99.91
KOG1273|consensus	405		99.91
KOG0270|consensus	463		99.9
KOG2048|consensus	691		99.9
KOG1274|consensus	933		99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG0322|consensus	323		99.9
KOG1034|consensus	385		99.9
KOG1538|consensus	1081		99.9
KOG4283|consensus	397		99.9
KOG1445|consensus	1012		99.9
KOG1036|consensus	323		99.9
KOG0269|consensus	839		99.9
KOG0639|consensus	705		99.89
KOG2445|consensus	361		99.89
KOG4378|consensus	673		99.88
KOG1009|consensus	434		99.88
KOG2919|consensus	406		99.88
KOG4328|consensus	498		99.87
KOG1538|consensus	1081		99.86
KOG0642|consensus	577		99.86
KOG2055|consensus	514		99.86
KOG4227|consensus	609		99.85
KOG1445|consensus	1012		99.85
KOG0302|consensus	440		99.85
KOG0307|consensus	1049		99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG1009|consensus	434		99.85
KOG4378|consensus	673		99.84
KOG0321|consensus	720		99.84
KOG1034|consensus	385		99.83
KOG0303|consensus	472		99.82
KOG1188|consensus	376		99.82
KOG0270|consensus	463		99.81
KOG0642|consensus	577		99.8
KOG1587|consensus	555		99.8
KOG0307|consensus	1049		99.8
KOG1963|consensus	792		99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG2919|consensus	406		99.79
KOG0771|consensus	398		99.78
KOG4497|consensus	447		99.78
KOG1524|consensus	737		99.78
KOG1517|consensus	1387		99.78
KOG0644|consensus	1113		99.78
KOG1524|consensus	737		99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1240|consensus	1431		99.77
KOG1334|consensus	559		99.77
KOG0303|consensus	472		99.76
KOG0290|consensus	364		99.76
KOG0771|consensus	398		99.76
KOG0322|consensus	323		99.75
KOG1007|consensus	370		99.74
KOG1007|consensus	370		99.73
KOG2110|consensus	391		99.73
KOG2110|consensus	391		99.73
KOG0649|consensus	325		99.73
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
KOG4497|consensus	447		99.72
KOG1587|consensus	555		99.7
KOG1523|consensus	361		99.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.7
KOG0649|consensus	325		99.68
KOG1240|consensus	1431		99.68
KOG0290|consensus	364		99.67
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
KOG1523|consensus	361		99.67
KOG4227|consensus	609		99.66
KOG2139|consensus	445		99.64
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.63
KOG1310|consensus	758		99.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.62
KOG2394|consensus	636		99.61
KOG2139|consensus	445		99.61
KOG2111|consensus	346		99.61
KOG2111|consensus	346		99.6
KOG1517|consensus	1387		99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
KOG1272|consensus	545		99.58
KOG0644|consensus	1113		99.58
KOG2394|consensus	636		99.57
KOG3881|consensus	412		99.56
KOG1334|consensus	559		99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
KOG2321|consensus	703		99.55
PRK04922	433	tolB translocation protein TolB; Provisional	99.54
PRK05137	435	tolB translocation protein TolB; Provisional	99.53
KOG1310|consensus	758		99.53
KOG3881|consensus	412		99.52
PRK02889	427	tolB translocation protein TolB; Provisional	99.51
PRK03629	429	tolB translocation protein TolB; Provisional	99.51
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
KOG0974|consensus	967		99.51
KOG1409|consensus	404		99.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
KOG1188|consensus	376		99.48
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.47
KOG1409|consensus	404		99.47
PRK05137	435	tolB translocation protein TolB; Provisional	99.46
KOG2315|consensus	566		99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
KOG1354|consensus	433		99.45
KOG1272|consensus	545		99.38
KOG0974|consensus	967		99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.36
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.36
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.35
PRK00178	430	tolB translocation protein TolB; Provisional	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.34
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.31
KOG2315|consensus	566		99.3
PRK04792	448	tolB translocation protein TolB; Provisional	99.3
KOG2321|consensus	703		99.3
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.29
KOG2314|consensus	698		99.28
PRK04792	448	tolB translocation protein TolB; Provisional	99.28
PRK00178	430	tolB translocation protein TolB; Provisional	99.26
KOG1354|consensus	433		99.26
KOG4547|consensus	541		99.25
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.25
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.23
KOG1912|consensus	1062		99.22
PRK01029	428	tolB translocation protein TolB; Provisional	99.21
KOG2314|consensus	698		99.21
PRK01029	428	tolB translocation protein TolB; Provisional	99.21
KOG0309|consensus	1081		99.21
KOG2041|consensus	1189		99.2
KOG4547|consensus	541		99.2
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.18
KOG4190|consensus	1034		99.17
COG4946	668	Uncharacterized protein related to the periplasmic	99.15
KOG2041|consensus	1189		99.1
KOG1064|consensus	2439		99.1
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.09
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.07
KOG3914|consensus	390		99.07
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.06
KOG1064|consensus	2439		99.05
KOG0882|consensus	558		99.05
KOG4532|consensus	344		99.05
KOG0280|consensus	339		99.05
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.03
KOG0309|consensus	1081		99.03
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.99
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.95
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.91
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.9
KOG0882|consensus	558		98.87
PRK04043	419	tolB translocation protein TolB; Provisional	98.86
COG4946	668	Uncharacterized protein related to the periplasmic	98.85
KOG0280|consensus	339		98.85
KOG4714|consensus	319		98.82
KOG1912|consensus	1062		98.78
KOG4532|consensus	344		98.77
KOG4714|consensus	319		98.76
KOG1920|consensus	1265		98.75
KOG4190|consensus	1034		98.75
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.74
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.71
KOG3914|consensus	390		98.66
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.64
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.64
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.63
PRK04043	419	tolB translocation protein TolB; Provisional	98.62
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.62
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.59
PRK02888	635	nitrous-oxide reductase; Validated	98.53
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.5
KOG1275|consensus	1118		98.49
KOG1645|consensus	463		98.48
KOG2695|consensus	425		98.45
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.39
KOG1275|consensus	1118		98.39
KOG2114|consensus	933		98.36
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.33
PRK02888	635	nitrous-oxide reductase; Validated	98.27
KOG2066|consensus	846		98.25
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.25
KOG2695|consensus	425		98.22
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.21
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.21
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.17
KOG1920|consensus	1265		98.15
KOG1832|consensus	1516		98.02
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.02
KOG3617|consensus	1416		98.01
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.01
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.01
KOG3621|consensus	726		97.95
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.93
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.92
KOG1832|consensus	1516		97.9
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.86
KOG2114|consensus	933		97.85
KOG2066|consensus	846		97.72
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.65
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.63
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.62
KOG1645|consensus	463		97.57
KOG1897|consensus	1096		97.56
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.56
KOG1008|consensus	783		97.53
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.5
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.48
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.42
KOG4649|consensus	354		97.42
COG3391	381	Uncharacterized conserved protein [Function unknow	97.42
KOG4649|consensus	354		97.41
KOG3617|consensus	1416		97.34
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.34
COG3391	381	Uncharacterized conserved protein [Function unknow	97.32
KOG4640|consensus	665		97.31
KOG3621|consensus	726		97.14
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.14
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.13
KOG4640|consensus	665		97.1
KOG2444|consensus	238		97.09
KOG2079|consensus	1206		97.06
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.05
KOG1008|consensus	783		97.05
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.02
PRK13616	591	lipoprotein LpqB; Provisional	96.99
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.98
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.93
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.89
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.88
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.87
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.87
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.87
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.82
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.74
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.7
PRK13616	591	lipoprotein LpqB; Provisional	96.63
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.61
KOG2444|consensus	238		96.58
KOG1897|consensus	1096		96.55
KOG2395|consensus	644		96.53
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.47
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.43
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.43
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.39
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.19
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.18
KOG2395|consensus	644		96.09
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.07
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.98
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.95
PHA02713	557	hypothetical protein; Provisional	95.89
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	95.47
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.42
KOG2079|consensus	1206		95.37
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.27
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.98
KOG2377|consensus	657		94.97
KOG4441|consensus	571		94.71
KOG4499|consensus	310		94.64
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.34
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.27
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.21
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.02
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.94
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.73
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.46
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.27
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.09
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.09
KOG1916|consensus	1283		93.04
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.76
KOG3630|consensus	1405		92.67
KOG2377|consensus	657		92.66
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.61
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.54
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.53
PRK13684	334	Ycf48-like protein; Provisional	92.41
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.12
KOG4499|consensus	310		91.9
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.8
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.72
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	91.52
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.84
PHA03098	534	kelch-like protein; Provisional	90.69
PHA02713	557	hypothetical protein; Provisional	90.36
KOG4441|consensus	571		90.34
KOG2280|consensus	829		90.25
COG5167	776	VID27 Protein involved in vacuole import and degra	90.18
KOG2247|consensus	615		90.16
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.8
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	89.17
PHA02790	480	Kelch-like protein; Provisional	88.96
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.22
COG5276	370	Uncharacterized conserved protein [Function unknow	88.15
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	87.26
KOG4460|consensus	741		87.12
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.11
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.62
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	85.08
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	84.81
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.0
KOG1916|consensus	1283		82.98
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	82.96
PF14727	418	PHTB1_N: PTHB1 N-terminus	82.6
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	82.03
PRK13684	334	Ycf48-like protein; Provisional	81.36
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.81
PF13449	326	Phytase-like: Esterase-like activity of phytase	80.06

>KOG0318|consensus

Probab=100.00  E-value=1.1e-58  Score=407.79  Aligned_cols=344  Identities=65%  Similarity=1.114  Sum_probs=331.4

Q ss_pred             cceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEE
Q psy13076         79 EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW  158 (423)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vw  158 (423)
                      .+.+..++..+++.++.++.+|.|..++|++++.+.+.+++++....+|.+|...++..+|+|.|.|+|+|+..|+||||
T Consensus         7 k~~~~~lPst~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIW   86 (603)
T KOG0318|consen    7 KETFASLPSTERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIW   86 (603)
T ss_pred             hhhccCCCcccCCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEE
Confidence            44567778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEE
Q psy13076        159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG  238 (423)
Q Consensus       159 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~  238 (423)
                      |....+.+++.++....++|.+++|++|++.+++++.+++++++++.+++|..+.++.+|.+.+++++|.|.+++++++|
T Consensus        87 dtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~  166 (603)
T KOG0318|consen   87 DTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATG  166 (603)
T ss_pred             eccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEec
Confidence            99988999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc-ccccCCCeEEEEECCC
Q psy13076        239 SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPD  317 (423)
Q Consensus       239 s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~i~~l~~~~~  317 (423)
                      ++|+++.+|+.++++++.+...|..+|.++.|+|||.++++++.||+|.+||.++++.+.++. ..+|.+.|.+++|+||
T Consensus       167 sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD  246 (603)
T KOG0318|consen  167 SDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD  246 (603)
T ss_pred             cCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC
Confidence            999999999999999999999999999999999999999999999999999999999988886 5689999999999999


Q ss_pred             CCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeE
Q psy13076        318 GTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITA  397 (423)
Q Consensus       318 ~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~  397 (423)
                      ++.|+|+|.|+++||||+.+.++++++..+.+..++++.|.|.++.|++.+.+|.|.+++..++. +.+.+.||++.|++
T Consensus       247 s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITa  325 (603)
T KOG0318|consen  247 STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITA  325 (603)
T ss_pred             CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeE
Confidence            99999999999999999999999999999998999999999999999999999999999999987 77899999999999


Q ss_pred             EEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        398 LALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       398 i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      ++.+||+++|.||+.||.|.-|+..+
T Consensus       326 Ltv~~d~~~i~SgsyDG~I~~W~~~~  351 (603)
T KOG0318|consen  326 LTVSPDGKTIYSGSYDGHINSWDSGS  351 (603)
T ss_pred             EEEcCCCCEEEeeccCceEEEEecCC
Confidence            99999999999999999999999753

>KOG0271|consensus

Probab=100.00  E-value=1.3e-52  Score=355.91  Aligned_cols=319  Identities=28%  Similarity=0.442  Sum_probs=275.5

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      ++.+.|+|+.|++||.|-++|+||+.+ .+|..+.+||..-|.|++|+||+..||||+.||+|++||-+++..+      
T Consensus       120 ~~~fsp~g~~l~tGsGD~TvR~WD~~T-eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~------  192 (480)
T KOG0271|consen  120 SVQFSPTGSRLVTGSGDTTVRLWDLDT-ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI------  192 (480)
T ss_pred             EEEecCCCceEEecCCCceEEeeccCC-CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc------
Confidence            456677999999999999999999987 5688899999999999999999999999999999999998876432      


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-----CCCEEEEEccCCcEEEEEcCCC
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-----SGFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-----~~~~l~s~~~d~~i~vwd~~~~  163 (423)
                                                         -+.|.+|+.-|++++|.|     ..+++|+++.||.++|||+..+
T Consensus       193 -----------------------------------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~  237 (480)
T KOG0271|consen  193 -----------------------------------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG  237 (480)
T ss_pred             -----------------------------------cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence                                               235678999999999976     4679999999999999999877


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEe-----------cCC-
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFK-----------PSR-  231 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~-  231 (423)
                      .++.  ...++..+|+++.|-.+|-   ..+.+++....+|....|...+++++|...|+.++.+           |.+ 
T Consensus       238 ~~~~--~lsgHT~~VTCvrwGG~gl---iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~  312 (480)
T KOG0271|consen  238 TCVR--TLSGHTASVTCVRWGGEGL---IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGR  312 (480)
T ss_pred             eEEE--EeccCccceEEEEEcCCce---EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccc
Confidence            6654  3556789999999987652   2344566677889888899999999999999998876           222 


Q ss_pred             -----------------------CeeEEEEeCCCeEEEEcCCCce-eeeeccccccCeEEEEECCCCCEEEEEEecCeEE
Q psy13076        232 -----------------------PFRIITGSEDNTIAVFEGPPFK-FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF  287 (423)
Q Consensus       232 -----------------------~~~~~s~s~d~~i~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~  287 (423)
                                             ..++++|++|.++.+|+....+ ......+|...|+.+.||||++++|++|.|+.|+
T Consensus       313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVk  392 (480)
T KOG0271|consen  313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVK  392 (480)
T ss_pred             cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccccee
Confidence                                   2369999999999999854332 3445678999999999999999999999999999


Q ss_pred             EEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEE
Q psy13076        288 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTV  367 (423)
Q Consensus       288 vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~  367 (423)
                      +|+.++|+.+..+.  +|-+.|..++|+.|.++|++||.|.|+++||++++++.                          
T Consensus       393 LW~g~tGk~lasfR--GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~--------------------------  444 (480)
T KOG0271|consen  393 LWDGRTGKFLASFR--GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK--------------------------  444 (480)
T ss_pred             eeeCCCcchhhhhh--hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec--------------------------
Confidence            99999999998885  69999999999999999999999999999999887632                          


Q ss_pred             eCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        368 SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       368 ~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                                        ..+.||.+.|.++.|+|||+.+++|+.|+.+++|.
T Consensus       445 ------------------~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  445 ------------------QDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ------------------ccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence                              24579999999999999999999999999999995

>KOG0271|consensus

Probab=100.00  E-value=5.5e-47  Score=321.79  Aligned_cols=299  Identities=24%  Similarity=0.369  Sum_probs=250.8

Q ss_pred             CCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076         37 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR  116 (423)
Q Consensus        37 ~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  116 (423)
                      +.+...+.||.++|.|++|+|++..|+||+.|.++|+||..++--                                   
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-----------------------------------  149 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-----------------------------------  149 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-----------------------------------
Confidence            344557889999999999999999999999999999999987421                                   


Q ss_pred             ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076        117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                             ..+..+|..=|.+++|+|||+.+|||+.||+|++||-+++++.- ..+..+...|++++|.|-..        
T Consensus       150 -------~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g-~~l~gH~K~It~Lawep~hl--------  213 (480)
T KOG0271|consen  150 -------LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG-RALRGHKKWITALAWEPLHL--------  213 (480)
T ss_pred             -------ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc-ccccCcccceeEEeeccccc--------
Confidence                   23457899999999999999999999999999999988776542 33445556677777766211        


Q ss_pred             CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCE
Q psy13076        197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH  276 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~  276 (423)
                                                     .|.+. ++++++.||.+++||....++.+.+.+|...|+|++|--+| +
T Consensus       214 -------------------------------~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-l  260 (480)
T KOG0271|consen  214 -------------------------------VPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-L  260 (480)
T ss_pred             -------------------------------CCCcc-ceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-e
Confidence                                           12222 58999999999999999888999999999999999997665 8


Q ss_pred             EEEEEecCeEEEEECCCccceecccccccCCCeEEEEEC-----------CCCC-------------------------e
Q psy13076        277 FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK-----------PDGT-------------------------Q  320 (423)
Q Consensus       277 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~-----------~~~~-------------------------~  320 (423)
                      +++||.|++|++|+...|....++.  +|..+|+.++.+           |.++                         .
T Consensus       261 iySgS~DrtIkvw~a~dG~~~r~lk--GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er  338 (480)
T KOG0271|consen  261 IYSGSQDRTIKVWRALDGKLCRELK--GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER  338 (480)
T ss_pred             EEecCCCceEEEEEccchhHHHhhc--ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence            9999999999999999999888885  688889888887           2233                         4


Q ss_pred             EEEEeCCCcEEEEecCCc-ceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEE
Q psy13076        321 LLTASGDKTCKLWDIETK-SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA  399 (423)
Q Consensus       321 l~s~s~d~~i~iwd~~~~-~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~  399 (423)
                      |++||+|.++.+|+.... +.+..+ .+++.....+.++|++.++++++.|..+++|+-+++.. +..++||-++|..++
T Consensus       339 lVSgsDd~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VYqva  416 (480)
T KOG0271|consen  339 LVSGSDDFTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF-LASFRGHVAAVYQVA  416 (480)
T ss_pred             eEEecCCceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeecccceeeeeCCCcch-hhhhhhccceeEEEE
Confidence            999999999999997544 344443 45566677888999999999999999999999998654 578999999999999


Q ss_pred             ecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        400 LSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       400 ~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      ||.|.++|+|||.|.++++|++.|
T Consensus       417 wsaDsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  417 WSADSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             eccCccEEEEcCCCceEEEEEeee
Confidence            999999999999999999999865

>KOG0319|consensus

Probab=100.00  E-value=1.3e-45  Score=337.36  Aligned_cols=406  Identities=21%  Similarity=0.346  Sum_probs=322.8

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeeccc-ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~g-h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      .+++.+|+..|+++++.+-+++|++.+ .+.++.+++ |++||..++|+|.+.+|++|+.|+.++|||...+.+.+.|..
T Consensus        67 a~~l~~d~~~L~~a~rs~llrv~~L~t-gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG  145 (775)
T KOG0319|consen   67 ALALTPDEEVLVTASRSQLLRVWSLPT-GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG  145 (775)
T ss_pred             eeeecCCccEEEEeeccceEEEEEccc-chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC
Confidence            356678999999999999999999987 478889998 999999999999999999999999999999999999888854


Q ss_pred             CCCCCceEEeeCCCCCe-EEE--ecCCeEEEEecCCCc-ccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC
Q psy13076         88 TQRGQPIVLGGDPKGKN-FLY--TNGNSVIIRNIENPA-ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~~i~~~~~~~-~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~  163 (423)
                       ..|....+.++|.-+. +++  ..+..+++|++..+. +..++..|.+.|+++.|++|+..+++++.|..+.+||+.+.
T Consensus       146 -~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~  224 (775)
T KOG0319|consen  146 -HGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQY  224 (775)
T ss_pred             -CCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhh
Confidence             3455556677776543 333  346789999998544 58889999999999999999999999999999999986431


Q ss_pred             ceeE--------------Ee-------------------e----------------------------------------
Q psy13076        164 EHIL--------------KN-------------------E----------------------------------------  170 (423)
Q Consensus       164 ~~~~--------------~~-------------------~----------------------------------------  170 (423)
                      +...              ..                   .                                        
T Consensus       225 ~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQn  304 (775)
T KOG0319|consen  225 KKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQN  304 (775)
T ss_pred             hhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccce
Confidence            1100              00                   0                                        


Q ss_pred             --------------ecCCCCCeeEEEEC-CCCCeEEEEEcC---------------------------------------
Q psy13076        171 --------------FHPIGGPIKDIAWS-PDNQRMVVVGEG---------------------------------------  196 (423)
Q Consensus       171 --------------~~~~~~~v~~v~~s-~~~~~~~~~~~~---------------------------------------  196 (423)
                                    +.+..++|.+++|- |+.+++++++..                                       
T Consensus       305 l~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~s  384 (775)
T KOG0319|consen  305 LFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGS  384 (775)
T ss_pred             EEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEec
Confidence                          00011223344432 344444444332                                       


Q ss_pred             CceeeEEEeecC----CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-------ce--eeeecccccc
Q psy13076        197 RERFGHVFMSET----GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-------FK--FKMTKQEHSR  263 (423)
Q Consensus       197 ~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-------~~--~~~~~~~~~~  263 (423)
                      ++....+|..+.    ..++....+|...|.+++++..+...++++|.|.++++|+.+.       ..  ...+...|..
T Consensus       385 KD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK  464 (775)
T KOG0319|consen  385 KDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK  464 (775)
T ss_pred             CCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc
Confidence            222233332211    1123445688899999999888877799999999999998765       11  1224457899


Q ss_pred             CeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeee
Q psy13076        264 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE  343 (423)
Q Consensus       264 ~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~  343 (423)
                      .|++++++|+.+++|+||.|++.++|++.+.+....+.  +|+.+++++.|+|..+.|+|+|.|+||+||.+.++.|+++
T Consensus       465 dIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT  542 (775)
T KOG0319|consen  465 DINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT  542 (775)
T ss_pred             cccceEecCCCceEEecccccceeeecccCceEEEEee--CCccceEEEEeccccceeEeccCCceEEEEEeccceeeee
Confidence            99999999999999999999999999999888888885  6999999999999999999999999999999999999999


Q ss_pred             eeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        344 FLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       344 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      +. ++........+.-+|+.|++++.+|.+++||+.+.+. ...+.+|++.||+++-+|...+++|||.||.|.+|.
T Consensus       543 ~e-GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC-~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  543 FE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC-EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ec-CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh-hhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            85 3445556666777999999999999999999998654 467899999999999999999999999999999995

>KOG0291|consensus

Probab=100.00  E-value=2.3e-43  Score=323.21  Aligned_cols=408  Identities=18%  Similarity=0.268  Sum_probs=327.7

Q ss_pred             ccceeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076          5 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      -+.-.+++.+||.-+++ .-...|.++|+.++.. .+.--.++..|..++.||+|.+|++..++|...+-++....+++.
T Consensus        15 yr~Gnl~ft~dG~sviS-PvGNrvsv~dLknN~S-~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~   92 (893)
T KOG0291|consen   15 YRAGNLVFTKDGNSVIS-PVGNRVSVFDLKNNKS-YTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHR   92 (893)
T ss_pred             eecCcEEECCCCCEEEe-ccCCEEEEEEccCCcc-eeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEE
Confidence            34557788889999997 4456899999987443 322235788999999999999999999999999999888777765


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC--------cccccccCCcceEEEEEECCCCCEEEEEccCCcEE
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP--------AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVR  156 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~  156 (423)
                      +.  .....-++.++|+|+.++.+.++.+.||.....        ...+++.+|...|.++.|+.|.+++++|+.|.++|
T Consensus        93 f~--fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~r  170 (893)
T KOG0291|consen   93 FN--FKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSAR  170 (893)
T ss_pred             Ee--ecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEE
Confidence            53  234455789999999999999999999986432        23467889999999999999999999999999999


Q ss_pred             EEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec-----------------------------
Q psy13076        157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE-----------------------------  207 (423)
Q Consensus       157 vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  207 (423)
                      +|.++..+......+.++.+.|-+.-|..+...+.+++.+...  .+|...                             
T Consensus       171 l~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l--~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~  248 (893)
T KOG0291|consen  171 LFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGAL--FVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKT  248 (893)
T ss_pred             EEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceE--EEEEecCCCcccccccccccccccccccccchhhh
Confidence            9998765554444555666677766676666666665543221  111111                             


Q ss_pred             -----------------------------------------------CCcceecccCCCcceeEEEEecCCCeeEEEEeC
Q psy13076        208 -----------------------------------------------TGTSVGEISGQSKPINSCDFKPSRPFRIITGSE  240 (423)
Q Consensus       208 -----------------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~  240 (423)
                                                                     .-..++.+.-...+|..+.|+..++++.+.|+.
T Consensus       249 ~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k  328 (893)
T KOG0291|consen  249 HKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK  328 (893)
T ss_pred             cceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc
Confidence                                                           001122222233456666666667765555566


Q ss_pred             CCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCe
Q psy13076        241 DNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ  320 (423)
Q Consensus       241 d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~  320 (423)
                      =|.+.+|+.....+.+..++|...+++++++|||+++|+|+.||+|+|||..++-++.++.  .|+..++.+.|+..|+.
T Consensus       329 lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt--eHts~Vt~v~f~~~g~~  406 (893)
T KOG0291|consen  329 LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT--EHTSGVTAVQFTARGNV  406 (893)
T ss_pred             cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec--cCCCceEEEEEEecCCE
Confidence            6777788776666777788999999999999999999999999999999999999998885  59999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCC-cEEEEecCCCCCceEEeccCCCceeEEE
Q psy13076        321 LLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG-FISYLDVNNPSTPIRVIKGHNKPITALA  399 (423)
Q Consensus       321 l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-~i~~~~~~~~~~~~~~~~~h~~~v~~i~  399 (423)
                      ++++|.||+||.||+......++|....+.....+++.|.|+.+.+|+.|. .|++|..+++ +.+-.+.||++||.+++
T Consensus       407 llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~  485 (893)
T KOG0291|consen  407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLS  485 (893)
T ss_pred             EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeE
Confidence            999999999999999999999999888888888888888999999999888 5999999996 45678999999999999


Q ss_pred             ecCCCCeEEEecCCCcEEEeeC
Q psy13076        400 LSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       400 ~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      |+|++..|+|+|.|++||+||+
T Consensus       486 f~~~~~~LaS~SWDkTVRiW~i  507 (893)
T KOG0291|consen  486 FSPDGSLLASGSWDKTVRIWDI  507 (893)
T ss_pred             EccccCeEEeccccceEEEEEe
Confidence            9999999999999999999985

>KOG0272|consensus

Probab=100.00  E-value=2.4e-46  Score=321.71  Aligned_cols=285  Identities=24%  Similarity=0.423  Sum_probs=243.6

Q ss_pred             ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc
Q psy13076         44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI  123 (423)
Q Consensus        44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  123 (423)
                      -|-++||..+.|++++..|+|||++|.+++|+..+...                                          
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~------------------------------------------  209 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL------------------------------------------  209 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce------------------------------------------
Confidence            36688999999999999999999999999999876422                                          


Q ss_pred             cccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        124 SDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       124 ~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                      ...|.||+..|.++.|+|.  +..||||+.||++++|++.+...+.  .+.++..+|..++|+|+|++            
T Consensus       210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--~l~gH~~RVs~VafHPsG~~------------  275 (459)
T KOG0272|consen  210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--DLEGHLARVSRVAFHPSGKF------------  275 (459)
T ss_pred             eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh--hhhcchhhheeeeecCCCce------------
Confidence            2357799999999999996  6799999999999999987654433  23344456666666666654            


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG  281 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s  281 (423)
                                                       ++|++.|.+-++||..+....+..++|...|.+++|.|||.++++|+
T Consensus       276 ---------------------------------L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG  322 (459)
T KOG0272|consen  276 ---------------------------------LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG  322 (459)
T ss_pred             ---------------------------------eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccC
Confidence                                             56778888999999888777778889999999999999999999999


Q ss_pred             ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEe-c
Q psy13076        282 FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW-Q  360 (423)
Q Consensus       282 ~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~-~  360 (423)
                      .|..-+|||+++++.+..+.  +|...|.+|+|+|+|..|+|||.|++++|||++....+..+.. +......+.+.+ .
T Consensus       323 lD~~~RvWDlRtgr~im~L~--gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA-H~nlVS~Vk~~p~~  399 (459)
T KOG0272|consen  323 LDSLGRVWDLRTGRCIMFLA--GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA-HSNLVSQVKYSPQE  399 (459)
T ss_pred             ccchhheeecccCcEEEEec--ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc-ccchhhheEecccC
Confidence            99999999999999988884  6999999999999999999999999999999998877555433 333445566666 7


Q ss_pred             CcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        361 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       361 g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      |.+|++++.|+++++|...+ ..+++.+.||.+.|.+++.+||+.+|+|+|.|++|++|..
T Consensus       400 g~fL~TasyD~t~kiWs~~~-~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  400 GYFLVTASYDNTVKIWSTRT-WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             CeEEEEcccCcceeeecCCC-cccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence            89999999999999998766 5778999999999999999999999999999999999963

>KOG0272|consensus

Probab=100.00  E-value=5.7e-45  Score=313.31  Aligned_cols=271  Identities=27%  Similarity=0.424  Sum_probs=244.0

Q ss_pred             EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCC--CCeEEEecCCCceEEeecCCcceeecccCCCCC
Q psy13076         14 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD--RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG   91 (423)
Q Consensus        14 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~   91 (423)
                      .|++.||+||-+|...||....- ..+.+|+||.+.|.++.|+|.  +..||||+.||++++|++++...          
T Consensus       185 ~ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~----------  253 (459)
T KOG0272|consen  185 RDSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP----------  253 (459)
T ss_pred             cCCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc----------
Confidence            49999999999999999998654 567799999999999999997  45799999999999999876422          


Q ss_pred             CceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee
Q psy13076         92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF  171 (423)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  171 (423)
                                                      +..+++|...|..++|+|+|++|+|++.|.+-|+||++++..++..  
T Consensus       254 --------------------------------l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q--  299 (459)
T KOG0272|consen  254 --------------------------------LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ--  299 (459)
T ss_pred             --------------------------------hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh--
Confidence                                            2346789999999999999999999999999999999988766543  


Q ss_pred             cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC
Q psy13076        172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP  251 (423)
Q Consensus       172 ~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~  251 (423)
                      .++..+|.+++|.|||..+++.  +.+.++++|+..++.++-.+.+|.++|.+++|+|++ |.+|||+.|+++++||.+.
T Consensus       300 EGHs~~v~~iaf~~DGSL~~tG--GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  300 EGHSKGVFSIAFQPDGSLAATG--GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRM  376 (459)
T ss_pred             cccccccceeEecCCCceeecc--CccchhheeecccCcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecc
Confidence            3556789999999999966654  456788999999999999999999999999999998 5699999999999999988


Q ss_pred             ceeeeeccccccCeEEEEECC-CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076        252 FKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC  330 (423)
Q Consensus       252 ~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i  330 (423)
                      .....+..+|.+.|+.++|+| .|.+|+++++|+++++|...++.+++.+  .+|.+.|.+++.+|++++++|++.|+++
T Consensus       377 r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL--aGHe~kV~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  377 RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL--AGHEGKVISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh--cCCccceEEEEeccCCceEEEeccCcee
Confidence            888888999999999999999 6889999999999999999999999888  4799999999999999999999999999


Q ss_pred             EEEe
Q psy13076        331 KLWD  334 (423)
Q Consensus       331 ~iwd  334 (423)
                      |+|.
T Consensus       455 KLW~  458 (459)
T KOG0272|consen  455 KLWR  458 (459)
T ss_pred             eecc
Confidence            9995

>KOG0318|consensus

Probab=100.00  E-value=2e-40  Score=292.60  Aligned_cols=401  Identities=21%  Similarity=0.275  Sum_probs=298.6

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecc---cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK---GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      |+|-.+|||.+.|+++.||.|.++|-.+ .+.+..|.   +|++.|.+|+|+||++.++|+|.|.++||||+.+.++..+
T Consensus       194 ~~VRysPDG~~Fat~gsDgki~iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t  272 (603)
T KOG0318|consen  194 NCVRYSPDGSRFATAGSDGKIYIYDGKT-GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST  272 (603)
T ss_pred             eeEEECCCCCeEEEecCCccEEEEcCCC-ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE
Confidence            5666778999999999999999999876 55677887   8999999999999999999999999999999999988887


Q ss_pred             ccCCCCCCceEEe--eCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076         85 LPRTQRGQPIVLG--GDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        85 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~  162 (423)
                      +..........++  +- ...++..+.+..+...+.+.+...+++.||...|+++..+|++++++||+.||.|.-|+..+
T Consensus       273 ~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~  351 (603)
T KOG0318|consen  273 WPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS  351 (603)
T ss_pred             eecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence            7543332111111  22 33444456678888999999999999999999999999999999999999999999999877


Q ss_pred             CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEee-cCCcceec-ccCCCcceeEEEEecCCCeeEEEEeC
Q psy13076        163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS-ETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSE  240 (423)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~s~s~  240 (423)
                      +.... ..-..+...|..++-+..+. +++++-++..  ++... ..+..-.+ ++...+|. +++..+++...++++ .
T Consensus       352 g~~~~-~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l--~~~~~~~~~~t~~~~~~lg~QP~-~lav~~d~~~avv~~-~  425 (603)
T KOG0318|consen  352 GTSDR-LAGKGHTNQIKGMAASESGE-LFTIGWDDTL--RVISLKDNGYTKSEVVKLGSQPK-GLAVLSDGGTAVVAC-I  425 (603)
T ss_pred             ccccc-cccccccceEEEEeecCCCc-EEEEecCCeE--EEEecccCcccccceeecCCCce-eEEEcCCCCEEEEEe-c
Confidence            65321 11234567788888776554 4555544322  11111 11111111 12222232 566666655434433 3


Q ss_pred             CCeEEEEc-CCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC
Q psy13076        241 DNTIAVFE-GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT  319 (423)
Q Consensus       241 d~~i~~~~-~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~  319 (423)
                      + .|.+.. ..... .   ....-...+++++|+++.++.|+.|+.|.+|.+...+...+.....|.+.|++++++||+.
T Consensus       426 ~-~iv~l~~~~~~~-~---~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~  500 (603)
T KOG0318|consen  426 S-DIVLLQDQTKVS-S---IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA  500 (603)
T ss_pred             C-cEEEEecCCcce-e---eccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc
Confidence            3 333332 22111 1   1122335789999999999999999999999988766544433346999999999999999


Q ss_pred             eEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEE
Q psy13076        320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA  399 (423)
Q Consensus       320 ~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~  399 (423)
                      +|+++...+++.+||+.+.+.......-+..+...++-+|+...+++|+.|.+|.+|.+..+..-+....+|...|+.+.
T Consensus       501 yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~  580 (603)
T KOG0318|consen  501 YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVA  580 (603)
T ss_pred             EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEE
Confidence            99999999999999999887744433334555666666779999999999999999999887766777789999999999


Q ss_pred             ecCCCCeEEEecCCCcEEEeeCC
Q psy13076        400 LSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       400 ~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      |- |...|+|.|.|..|++|++.
T Consensus       581 wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  581 WL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             Ee-cCceEEeccCcceeEEeccc
Confidence            98 66789999999999999975

>KOG0319|consensus

Probab=100.00  E-value=8.4e-41  Score=305.97  Aligned_cols=408  Identities=21%  Similarity=0.271  Sum_probs=308.0

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCcee-ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR-VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      ++.+.+|++|+++..| .|...|+.+..-.+. .-+.-...+++++..||+..|++++..+.+++|++.++++.+.....
T Consensus        25 ~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~  103 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI  103 (775)
T ss_pred             eeECCCCCEEEEecCc-eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc
Confidence            6677789999986655 677888876443122 22446778999999999999999999999999999999988888777


Q ss_pred             CCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCC--EEEEEccCCcEEEEEcCCCce
Q psy13076         89 QRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF--YIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l~s~~~d~~i~vwd~~~~~~  165 (423)
                      +.++.+.+.++|.+..++.. .++.+++||++++.+.+.|.||.+.|.++.|+|+-.  .|++|..|+++++||+..+..
T Consensus       104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t  183 (775)
T KOG0319|consen  104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT  183 (775)
T ss_pred             cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence            88899999999999555543 367899999999999999999999999999999654  589999999999999985443


Q ss_pred             eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEee---------------------------------------
Q psy13076        166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS---------------------------------------  206 (423)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  206 (423)
                       +-.....+...|++++|++|+..+++++-+  ....+|+.                                       
T Consensus       184 -cl~~~~~H~S~vtsL~~~~d~~~~ls~~RD--kvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g  260 (775)
T KOG0319|consen  184 -CLHTMILHKSAVTSLAFSEDSLELLSVGRD--KVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG  260 (775)
T ss_pred             -HHHHHHhhhhheeeeeeccCCceEEEeccC--cEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence             111222344667777777777766665533  22222221                                       


Q ss_pred             -------cCCc-------------------------------------------ceecccCCCcceeEEEEecCCCeeEE
Q psy13076        207 -------ETGT-------------------------------------------SVGEISGQSKPINSCDFKPSRPFRII  236 (423)
Q Consensus       207 -------~~~~-------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~  236 (423)
                             +.+.                                           ....+.+.+..|..+.|-......++
T Consensus       261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la  340 (775)
T KOG0319|consen  261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA  340 (775)
T ss_pred             eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence                   1111                                           11112233334444444433333578


Q ss_pred             EEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCc--cceecccccccCCCeEEEEE
Q psy13076        237 TGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA--DLVSELGNPAHKGGVYAVAW  314 (423)
Q Consensus       237 s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~i~~l~~  314 (423)
                      .+++...+++|+.++..+. ...+|.+.|.++....+|-+|++||.|.++++|.+..+  +....-...+|+..|.++++
T Consensus       341 VATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~  419 (775)
T KOG0319|consen  341 VATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG  419 (775)
T ss_pred             EEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee
Confidence            8888999999988776665 67899999999997788899999999999999977332  22222233579999999999


Q ss_pred             CCCC-CeEEEEeCCCcEEEEecCCccee-------ee-eeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCce
Q psy13076        315 KPDG-TQLLTASGDKTCKLWDIETKSAV-------SE-FLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI  385 (423)
Q Consensus       315 ~~~~-~~l~s~s~d~~i~iwd~~~~~~i-------~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~  385 (423)
                      +..+ .+|+++|.|+++++|++...+.-       .. ....+.-....+...+++..+++|+.|.+.++|++.+ ....
T Consensus       420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~  498 (775)
T KOG0319|consen  420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLL  498 (775)
T ss_pred             cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEE
Confidence            7765 68999999999999999762110       00 1112233455677778999999999999999999985 4556


Q ss_pred             EEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        386 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       386 ~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      .++.||.+.|+++.|+|.++.++|+|.|++|+||.+++
T Consensus       499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~  536 (775)
T KOG0319|consen  499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST  536 (775)
T ss_pred             EEeeCCccceEEEEeccccceeEeccCCceEEEEEecc
Confidence            88999999999999999999999999999999999875

>KOG0315|consensus

Probab=100.00  E-value=6.7e-41  Score=269.53  Aligned_cols=276  Identities=21%  Similarity=0.367  Sum_probs=222.6

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCce
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPI   94 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~   94 (423)
                      +.-+|++|++|.+||+|...+ +.+.++++-.++.|+.|.+.|+++.||+++. ..||++|+.+.               
T Consensus         9 ~~viLvsA~YDhTIRfWqa~t-G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~---------------   71 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALT-GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSN---------------   71 (311)
T ss_pred             CceEEEeccCcceeeeeehhc-CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCC---------------
Confidence            356899999999999999987 5678888866788999999999999999887 68999999763               


Q ss_pred             EEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCC
Q psy13076         95 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI  174 (423)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  174 (423)
                                               ++.....|.+|+..|+++.|..+|+.++||++||++||||++...+.  ..+   
T Consensus        72 -------------------------np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q--R~~---  121 (311)
T KOG0315|consen   72 -------------------------NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ--RNY---  121 (311)
T ss_pred             -------------------------CCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc--hhc---
Confidence                                     22234567899999999999999999999999999999999763321  111   


Q ss_pred             CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee
Q psy13076        175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF  254 (423)
Q Consensus       175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~  254 (423)
                                                                .+.++|+++..+|++.. |++|.++|.|++||.....+
T Consensus       122 ------------------------------------------~~~spVn~vvlhpnQte-Lis~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen  122 ------------------------------------------QHNSPVNTVVLHPNQTE-LISGDQSGNIRVWDLGENSC  158 (311)
T ss_pred             ------------------------------------------cCCCCcceEEecCCcce-EEeecCCCcEEEEEccCCcc
Confidence                                                      12235555555665543 77889999999999876544


Q ss_pred             eeec-cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecc----cccccCCCeEEEEECCCCCeEEEEeCCCc
Q psy13076        255 KMTK-QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL----GNPAHKGGVYAVAWKPDGTQLLTASGDKT  329 (423)
Q Consensus       255 ~~~~-~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~----~~~~~~~~i~~l~~~~~~~~l~s~s~d~~  329 (423)
                      ...+ .+...+|+++.+.|||++++++...|.+++|++-.......+    +.++|++.+....+||++++|+++|.|++
T Consensus       159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt  238 (311)
T KOG0315|consen  159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT  238 (311)
T ss_pred             ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence            3332 344578999999999999999999999999998654332221    23579999999999999999999999999


Q ss_pred             EEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEE
Q psy13076        330 CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFT  409 (423)
Q Consensus       330 i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s  409 (423)
                      ++||+....  ++                                         .-..+.+|++++++++||.|++||+|
T Consensus       239 v~iwn~~~~--~k-----------------------------------------le~~l~gh~rWvWdc~FS~dg~YlvT  275 (311)
T KOG0315|consen  239 VKIWNTDDF--FK-----------------------------------------LELVLTGHQRWVWDCAFSADGEYLVT  275 (311)
T ss_pred             EEEEecCCc--ee-----------------------------------------eEEEeecCCceEEeeeeccCccEEEe
Confidence            999998764  10                                         01356899999999999999999999


Q ss_pred             ecCCCcEEEeeCCC
Q psy13076        410 GSHDGFITRWNAKT  423 (423)
Q Consensus       410 ~s~D~~i~~W~~~~  423 (423)
                      ||.|..+++|+++.
T Consensus       276 assd~~~rlW~~~~  289 (311)
T KOG0315|consen  276 ASSDHTARLWDLSA  289 (311)
T ss_pred             cCCCCceeeccccc
Confidence            99999999999863

>KOG0291|consensus

Probab=100.00  E-value=1e-38  Score=292.84  Aligned_cols=408  Identities=18%  Similarity=0.284  Sum_probs=319.6

Q ss_pred             ceeeEEEE--eCCEEEEEeccceEEEEeccCCCC-ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc---
Q psy13076          7 DQQVSCLW--QGDYLLTVSLSGFISYLDVNNPST-PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY---   80 (423)
Q Consensus         7 ~~~~~~~~--~~~~~~~~~~dg~i~~~d~~~~~~-~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~---   80 (423)
                      |-.+.+.|  |.++++++|+|-+.++|+++.... ..+.|.||+++|..+.|..+...++|-+.||.+.+|......   
T Consensus       146 ddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~  225 (893)
T KOG0291|consen  146 DDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPEL  225 (893)
T ss_pred             cceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccc
Confidence            33456667  899999999999999999864222 356789999999999999999999999999999999765110   


Q ss_pred             --------------------e------eec----ccCCCCCCceEEeeCCCCCeEEEec-CCeEEEEecCCCcccccccC
Q psy13076         81 --------------------I------FAT----LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTE  129 (423)
Q Consensus        81 --------------------~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~  129 (423)
                                          .      ...    .......+..++.+++.-+.++..- .....++.+.+-.+++.+.-
T Consensus       226 ~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi  305 (893)
T KOG0291|consen  226 DKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI  305 (893)
T ss_pred             ccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec
Confidence                                0      000    0001123445566777666666543 33344666666666666666


Q ss_pred             CcceEEEEEECCCCCEEEEEccC-CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC
Q psy13076        130 HSCAVNVAKYSPSGFYIASGDIS-GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET  208 (423)
Q Consensus       130 h~~~i~~~~~sp~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~  208 (423)
                      -...|..+.|+..|..+|.|+.. |++-||+......+++.  .+|...+.+++++|||+.+++.+.+.  ...+|....
T Consensus       306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ--QgH~~~i~~l~YSpDgq~iaTG~eDg--KVKvWn~~S  381 (893)
T KOG0291|consen  306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ--QGHSDRITSLAYSPDGQLIATGAEDG--KVKVWNTQS  381 (893)
T ss_pred             ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec--cccccceeeEEECCCCcEEEeccCCC--cEEEEeccC
Confidence            66789999999999999998765 89999998776655443  34567899999999999988876554  467899999


Q ss_pred             CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccc-cCeEEEEECCCCCEEEEEEecCe-E
Q psy13076        209 GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS-RFVQAVRYSPSGSHFASAGFDGK-V  286 (423)
Q Consensus       209 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~s~s~dg~-i  286 (423)
                      +.+..+...|.+.++.+.|...+.. +++++.||+++.||...+..-+++.... ....+++..|.|..+++|+.|.. |
T Consensus       382 gfC~vTFteHts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~I  460 (893)
T KOG0291|consen  382 GFCFVTFTEHTSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEI  460 (893)
T ss_pred             ceEEEEeccCCCceEEEEEEecCCE-EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEE
Confidence            9999999999999999999998875 8899999999999998877665554432 34578999999999999999884 9


Q ss_pred             EEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc-ceeeeeeeCceeEeeEEEEEecCcEEE
Q psy13076        287 FLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK-SAVSEFLMGNQVEDQQVSCLWQGDYLL  365 (423)
Q Consensus       287 ~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~-~~i~~~~~~~~~~~~~~~~~~~g~~l~  365 (423)
                      ++|+.++|+++-.+.  +|.++|.+++|+|.++.|+|+|.|+|||+||+-.. ..+.++...+  ....+++.|+|+.++
T Consensus       461 fvWS~qTGqllDiLs--GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s--dvl~vsfrPdG~ela  536 (893)
T KOG0291|consen  461 FVWSVQTGQLLDILS--GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRS--DVLAVSFRPDGKELA  536 (893)
T ss_pred             EEEEeecCeeeehhc--CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeecc--ceeEEEEcCCCCeEE
Confidence            999999999988884  79999999999999999999999999999998544 3344443332  345677788999999


Q ss_pred             EEeCCCcEEEEecCCCCCc--------e-----------EEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        366 TVSLSGFISYLDVNNPSTP--------I-----------RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       366 ~~~~~~~i~~~~~~~~~~~--------~-----------~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      .++.||.|.+||...+.+.        +           ..-..-.+..+++++|+||+.|++||....|++|++.+
T Consensus       537 VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  537 VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE  613 (893)
T ss_pred             EEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence            9999999999998754221        0           00112346799999999999999999999999999753

>KOG0279|consensus

Probab=100.00  E-value=7.7e-40  Score=267.65  Aligned_cols=302  Identities=25%  Similarity=0.365  Sum_probs=245.9

Q ss_pred             eeecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         40 IRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      .-+|+||++.|+.++..+. .+++++++.|.++.+|++...                                     +.
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-------------------------------------d~   50 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-------------------------------------DI   50 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-------------------------------------cc
Confidence            3478999999999999997 568999999999999998652                                     12


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                      +-+..++.|.||+..|..+..++||+++++++.|+++|+||+.+++..  ..|.+|..-|.+++|+||++.+++.+  ++
T Consensus        51 ~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t--~~f~GH~~dVlsva~s~dn~qivSGS--rD  126 (315)
T KOG0279|consen   51 KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGEST--RRFVGHTKDVLSVAFSTDNRQIVSGS--RD  126 (315)
T ss_pred             ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEE--EEEEecCCceEEEEecCCCceeecCC--Cc
Confidence            345566788999999999999999999999999999999999987544  45667778899999999999987654  45


Q ss_pred             eeeEEEeecCCcceecccCC--CcceeEEEEecCC-CeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC
Q psy13076        199 RFGHVFMSETGTSVGEISGQ--SKPINSCDFKPSR-PFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS  275 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~-~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  275 (423)
                      +...+|..-. .+.-++...  ...|.++.|+|+. +..+++++.|+++++|+....++...+.+|..+++.+++||||.
T Consensus       127 kTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs  205 (315)
T KOG0279|consen  127 KTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS  205 (315)
T ss_pred             ceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC
Confidence            5555665433 222223222  6789999999984 45699999999999999999999889999999999999999999


Q ss_pred             EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEE
Q psy13076        276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQV  355 (423)
Q Consensus       276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~  355 (423)
                      ++++|+.||.+.+||+..++.+..+   .|...|.+++|+|+.-+|+.+. +..|+|||+.++.++.++......     
T Consensus       206 lcasGgkdg~~~LwdL~~~k~lysl---~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g-----  276 (315)
T KOG0279|consen  206 LCASGGKDGEAMLWDLNEGKNLYSL---EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIG-----  276 (315)
T ss_pred             EEecCCCCceEEEEEccCCceeEec---cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccc-----
Confidence            9999999999999999999988776   4788999999999877776554 556999999999887765321100     


Q ss_pred             EEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        356 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       356 ~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                                                 .   ..+.-.....+++|++||..|.+|-.|+.|++|.+.
T Consensus       277 ---------------------------~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  277 ---------------------------P---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ---------------------------c---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence                                       0   011223347789999999999999999999999874

>KOG0286|consensus

Probab=100.00  E-value=1.2e-39  Score=268.10  Aligned_cols=294  Identities=26%  Similarity=0.412  Sum_probs=247.1

Q ss_pred             eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076         40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE  119 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  119 (423)
                      .++|+||.+.|.++.|++|.++++|+|.||.+.|||.-+.-..+-+                                  
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai----------------------------------   93 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI----------------------------------   93 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE----------------------------------
Confidence            4689999999999999999999999999999999997653111110                                  


Q ss_pred             CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                              +-...=|...+|+|+|+++|+|+.|....||++.+.+..         +.+                     
T Consensus        94 --------pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~---------g~~---------------------  135 (343)
T KOG0286|consen   94 --------PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE---------GNV---------------------  135 (343)
T ss_pred             --------ecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc---------ccc---------------------
Confidence                    011223778899999999999999999999998754211         000                     


Q ss_pred             eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECC-CCCEEE
Q psy13076        200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP-SGSHFA  278 (423)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~  278 (423)
                                ...+++.+|...+.+|.|-+++  .|+|+|.|.++.+||.+..+....+.+|...|.+|+++| +++.++
T Consensus       136 ----------~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  136 ----------RVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             ----------eeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence                      0012456777888888888855  489999999999999999998899999999999999999 899999


Q ss_pred             EEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCc-eeEeeEEEE
Q psy13076        279 SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN-QVEDQQVSC  357 (423)
Q Consensus       279 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~-~~~~~~~~~  357 (423)
                      +|+.|+..++||.+++...+.+  .+|...|.++.|.|+|.-+++||+|++.|+||++....+..|.... .....++.+
T Consensus       204 Sg~cD~~aklWD~R~~~c~qtF--~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F  281 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQCVQTF--EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF  281 (343)
T ss_pred             ecccccceeeeeccCcceeEee--cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence            9999999999999999888877  4799999999999999999999999999999999887777664332 233456677


Q ss_pred             EecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        358 LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       358 ~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      +..|+.|.+|-.|.++.+||.-..+. +..+.||...|.++..+|||-.++|||.|.++|||.
T Consensus       282 S~SGRlLfagy~d~~c~vWDtlk~e~-vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  282 SKSGRLLFAGYDDFTCNVWDTLKGER-VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cccccEEEeeecCCceeEeeccccce-EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            77999999999999999999877544 567899999999999999999999999999999994

>KOG0645|consensus

Probab=100.00  E-value=9.1e-39  Score=260.33  Aligned_cols=292  Identities=20%  Similarity=0.380  Sum_probs=223.6

Q ss_pred             eeecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         40 IRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      ++.++||.+.|..++|+|- |.+|||||.|++||+|++..+.-.                               .....
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~-------------------------------~ck~v   55 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSW-------------------------------TCKTV   55 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcE-------------------------------EEEEe
Confidence            5678999999999999997 889999999999999998742110                               00000


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                             .-.+|+..|.+++|+|.|++||+++.|.++-||.-...+......+.++..+|.+++|+++|.+         
T Consensus        56 -------ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~---------  119 (312)
T KOG0645|consen   56 -------LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY---------  119 (312)
T ss_pred             -------ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCE---------
Confidence                   1136999999999999999999999999999999766555444445555555666666555543         


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC---CCceeeeeccccccCeEEEEECCCCC
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG---PPFKFKMTKQEHSRFVQAVRYSPSGS  275 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~---~~~~~~~~~~~~~~~i~~l~~s~~g~  275 (423)
                                                          ||+|++|+.+.+|+.   ..+.+...++.|...|..+.|+|...
T Consensus       120 ------------------------------------LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen  120 ------------------------------------LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED  163 (312)
T ss_pred             ------------------------------------EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence                                                677888888888864   35667778889999999999999999


Q ss_pred             EEEEEEecCeEEEEECCC---ccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEe
Q psy13076        276 HFASAGFDGKVFLYDGAS---ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVED  352 (423)
Q Consensus       276 ~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~  352 (423)
                      +|+++|+|++|++|.-..   .++..++  .+|...|++++|+|.|..|++++.|++++||-..+.-  .. .++    .
T Consensus       164 lL~S~SYDnTIk~~~~~~dddW~c~~tl--~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--~~-~~s----r  234 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDDDWECVQTL--DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--SG-MHS----R  234 (312)
T ss_pred             eeEEeccCCeEEEEeecCCCCeeEEEEe--cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc--ch-hcc----c
Confidence            999999999999998662   2344555  4688899999999999999999999999999855221  00 011    1


Q ss_pred             eEEEEEecCcEEEEEeCCCcEEEEecCCC-CCc-----eEEeccCCCceeEEEecCC-CCeEEEecCCCcEEEeeCCC
Q psy13076        353 QQVSCLWQGDYLLTVSLSGFISYLDVNNP-STP-----IRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       353 ~~~~~~~~g~~l~~~~~~~~i~~~~~~~~-~~~-----~~~~~~h~~~v~~i~~sp~-~~~l~s~s~D~~i~~W~~~~  423 (423)
                      ....+.|....|++++.|+.|+++..... ..|     .+....|...||++.|.|. .+.|+++|.||+|++|.++.
T Consensus       235 ~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~~  312 (312)
T KOG0645|consen  235 ALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELEI  312 (312)
T ss_pred             ceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEecC
Confidence            11234456677899999999999865431 222     2234579999999999995 67899999999999998763

>KOG0296|consensus

Probab=100.00  E-value=3.5e-38  Score=266.87  Aligned_cols=330  Identities=20%  Similarity=0.233  Sum_probs=253.8

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      +.|+++|+..++++|+.|..=.+|++.++. ....+.||++.|+++.|+.+|.+||||+.+|.|+||...++.....+. 
T Consensus        68 Favsl~P~~~l~aTGGgDD~AflW~~~~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-  145 (399)
T KOG0296|consen   68 FAVSLHPNNNLVATGGGDDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-  145 (399)
T ss_pred             EEEEeCCCCceEEecCCCceEEEEEccCCc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-
Confidence            567778999999999999999999998754 677899999999999999999999999999999999999987766654 


Q ss_pred             CCCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                      .......++.++|.+..++.. .+..+-+|.+.++...+++.||+.++++-+|.|+|+.++++..||+|++||.+++.++
T Consensus       146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~  225 (399)
T KOG0296|consen  146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL  225 (399)
T ss_pred             cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee
Confidence            233456678999999887765 4778999999998899999999999999999999999999999999999999998766


Q ss_pred             EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076        167 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV  246 (423)
Q Consensus       167 ~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~  246 (423)
                      ....... ..+..++.++..+..++.+....                                  +..++..+.-+.+.+
T Consensus       226 ~~~~~~e-~~~~~~~~~~~~~~~~~~g~~e~----------------------------------~~~~~~~~sgKVv~~  270 (399)
T KOG0296|consen  226 HKITQAE-GLELPCISLNLAGSTLTKGNSEG----------------------------------VACGVNNGSGKVVNC  270 (399)
T ss_pred             EEecccc-cCcCCccccccccceeEeccCCc----------------------------------cEEEEccccceEEEe
Confidence            5433211 23445566666655544332211                                  111111111111222


Q ss_pred             EcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC
Q psy13076        247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG  326 (423)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~  326 (423)
                      .......+..........|-++.++..-++.|+|+-||+|.|||+.+......+   .|..+|..+.|-+ -.+|++++.
T Consensus       271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c---~he~~V~~l~w~~-t~~l~t~c~  346 (399)
T KOG0296|consen  271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC---EHEDGVTKLKWLN-TDYLLTACA  346 (399)
T ss_pred             cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec---cCCCceEEEEEcC-cchheeecc
Confidence            211111111111222233555666667778999999999999999887766655   3788899999998 789999999


Q ss_pred             CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCe
Q psy13076        327 DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT  406 (423)
Q Consensus       327 d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~  406 (423)
                      +|+|++||.++++++                                            ....||+.+|.+++.+|+.++
T Consensus       347 ~g~v~~wDaRtG~l~--------------------------------------------~~y~GH~~~Il~f~ls~~~~~  382 (399)
T KOG0296|consen  347 NGKVRQWDARTGQLK--------------------------------------------FTYTGHQMGILDFALSPQKRL  382 (399)
T ss_pred             CceEEeeeccccceE--------------------------------------------EEEecCchheeEEEEcCCCcE
Confidence            999999999988653                                            345799999999999999999


Q ss_pred             EEEecCCCcEEEeeCC
Q psy13076        407 VFTGSHDGFITRWNAK  422 (423)
Q Consensus       407 l~s~s~D~~i~~W~~~  422 (423)
                      ++|+|.|++.++++..
T Consensus       383 vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  383 VVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEecCCCeEEEEecC
Confidence            9999999999999864

>KOG0306|consensus

Probab=100.00  E-value=1.6e-37  Score=284.79  Aligned_cols=394  Identities=24%  Similarity=0.299  Sum_probs=303.1

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC-----
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ-----   89 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~-----   89 (423)
                      +|..||+||.|+.|-+||+-... -.+.|+||++.|+..-|..+..+|+|.|.|+.||+||++++.|+.+...+.     
T Consensus       118 ~G~rlaSGskDt~IIvwDlV~E~-Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~  196 (888)
T KOG0306|consen  118 IGTRLASGSKDTDIIVWDLVGEE-GLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWA  196 (888)
T ss_pred             cCceEeecCCCccEEEEEeccce-eeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEE
Confidence            69999999999999999997544 356899999999999999989999999999999999999877665532110     


Q ss_pred             -----------------------------------------------CCCceEEeeCCCCCeEEE---------------
Q psy13076         90 -----------------------------------------------RGQPIVLGGDPKGKNFLY---------------  107 (423)
Q Consensus        90 -----------------------------------------------~~~~~~~~~~~~~~~~~~---------------  107 (423)
                                                                     ++..+.+..+++++.+++               
T Consensus       197 l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~  276 (888)
T KOG0306|consen  197 LVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSK  276 (888)
T ss_pred             EEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCH
Confidence                                                           011111222222221111               


Q ss_pred             ----------------------------------------------------------------ecCCeEEEEecCC---
Q psy13076        108 ----------------------------------------------------------------TNGNSVIIRNIEN---  120 (423)
Q Consensus       108 ----------------------------------------------------------------~~~~~~~i~~~~~---  120 (423)
                                                                                      ...+.+....++.   
T Consensus       277 ~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~  356 (888)
T KOG0306|consen  277 EEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGK  356 (888)
T ss_pred             HHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCC
Confidence                                                                            1111111111111   


Q ss_pred             --Cccc----ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEE
Q psy13076        121 --PAIS----DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG  194 (423)
Q Consensus       121 --~~~~----~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~  194 (423)
                        +...    -.+.||...|.+++++.+...++||+ .+.+++|+..+.+++.....    +-+.+..|-|.++++++..
T Consensus       357 ~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~----~y~l~~~Fvpgd~~Iv~G~  431 (888)
T KOG0306|consen  357 TSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC----GYILASKFVPGDRYIVLGT  431 (888)
T ss_pred             CCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc----ccEEEEEecCCCceEEEec
Confidence              0000    13468999999999999988888875 46899999988777654332    3577889999999988876


Q ss_pred             cCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-----cee-e-ee-----ccccc
Q psy13076        195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-----FKF-K-MT-----KQEHS  262 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-----~~~-~-~~-----~~~~~  262 (423)
                      ...+  ..+++......+..+..|...|.+++..|++.. ++++|.|++++.|+..-     ... + +.     .-...
T Consensus       432 k~Ge--l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~  508 (888)
T KOG0306|consen  432 KNGE--LQVFDLASASLVETIRAHDGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELE  508 (888)
T ss_pred             cCCc--eEEEEeehhhhhhhhhccccceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecc
Confidence            5543  356777777778888899999999999999986 89999999999997421     110 0 11     11234


Q ss_pred             cCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceee
Q psy13076        263 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVS  342 (423)
Q Consensus       263 ~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~  342 (423)
                      +.|.|+.+||||++||.+=-|.+|+||-+.+-+....+  -+|..+|.+|..+||++.++|||.|+.|++|-+.=|.|-+
T Consensus       509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL--YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK  586 (888)
T KOG0306|consen  509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL--YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK  586 (888)
T ss_pred             ccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee--cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh
Confidence            67899999999999999999999999998887766555  3799999999999999999999999999999999999888


Q ss_pred             eeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        343 EFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      .+..+ +.....+.+.|....+-+++-|+.++.||-... ..+..+.+|...|++++.+|+|.+++|+|.|..||+|.-
T Consensus       587 S~fAH-dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF-e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  587 SFFAH-DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF-EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             hhhcc-cCceeEEEEcccceeEEEecCcceEEeechhhh-hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence            77643 334455667788888899999999999997664 446789999999999999999999999999999999963

>KOG0306|consensus

Probab=100.00  E-value=8.3e-37  Score=280.20  Aligned_cols=400  Identities=18%  Similarity=0.273  Sum_probs=295.3

Q ss_pred             eeeEEEE---eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076          8 QQVSCLW---QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus         8 ~~~~~~~---~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      +-++|..   |...||.|=.||.|++|+.... .+..+|.||...|+++.|...|..|+|||.|+.|.+||+-....+..
T Consensus        66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~-~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r  144 (888)
T KOG0306|consen   66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESE-EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR  144 (888)
T ss_pred             ceEEEeeccCCcceEEEEecCceEEeeccCCC-ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence            4567774   4556788888999999998764 56669999999999999999999999999999999999987766666


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEE-ecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLY-TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~  163 (423)
                      +..+..... -+.+......++. +.++.+++|++++..+..+...|.+.|+++++.+  +.++++..|+.+++|++...
T Consensus       145 L~GHkd~iT-~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~  221 (888)
T KOG0306|consen  145 LRGHKDSIT-QALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFE  221 (888)
T ss_pred             eecchHHHh-HHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecc
Confidence            654332211 1222222233333 4578899999999999999999999999999988  78999999999999998210


Q ss_pred             --c----------------------eeE------------E----------------------e-----eec--------
Q psy13076        164 --E----------------------HIL------------K----------------------N-----EFH--------  172 (423)
Q Consensus       164 --~----------------------~~~------------~----------------------~-----~~~--------  172 (423)
                        +                      ...            .                      .     ..+        
T Consensus       222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~  301 (888)
T KOG0306|consen  222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED  301 (888)
T ss_pred             cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence              0                      000            0                      0     000        


Q ss_pred             ----------------CCCCCeeEEEECCCCCeE---EEEEcCCceeeEEEeecC-Cc------ce--ecccCCCcceeE
Q psy13076        173 ----------------PIGGPIKDIAWSPDNQRM---VVVGEGRERFGHVFMSET-GT------SV--GEISGQSKPINS  224 (423)
Q Consensus       173 ----------------~~~~~v~~v~~s~~~~~~---~~~~~~~~~~~~~~~~~~-~~------~~--~~~~~~~~~i~~  224 (423)
                                      .....+.+++|-|.+...   +.. ..+  ...++..+. +.      .+  -++.+|...|.+
T Consensus       302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l-~nN--tv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRs  378 (888)
T KOG0306|consen  302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL-ANN--TVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRS  378 (888)
T ss_pred             chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe-ecC--ceEEEEeccCCCCCccccccceeeeccchhheeE
Confidence                            001235566666654322   221 111  122222222 11      11  234578889999


Q ss_pred             EEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccc
Q psy13076        225 CDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA  304 (423)
Q Consensus       225 ~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  304 (423)
                      ++++.+..  ++..+..+.+++|+....++.++....  ++.+..|-|.+++++.|...|.+.+||+.+...+.++.  +
T Consensus       379 l~vS~d~~--~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~--A  452 (888)
T KOG0306|consen  379 LCVSSDSI--LLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR--A  452 (888)
T ss_pred             EEeecCce--eeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh--c
Confidence            99997763  334445779999998888887776654  78899999999999999999999999999998887774  7


Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce-------eeeeee----CceeEeeEEEEEecCcEEEEEeCCCcE
Q psy13076        305 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA-------VSEFLM----GNQVEDQQVSCLWQGDYLLTVSLSGFI  373 (423)
Q Consensus       305 ~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~-------i~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~i  373 (423)
                      |.+.|++++.+||+..+++||.|.+|++||..--..       +-.+.+    .-......+.++|+|.+|+.+-.|.++
T Consensus       453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTV  532 (888)
T KOG0306|consen  453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTV  532 (888)
T ss_pred             cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeE
Confidence            999999999999999999999999999999752111       101111    112234556778899999999999999


Q ss_pred             EEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        374 SYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       374 ~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      ++|-+.+... .-.+.||.-||.|+..|||.++|+|||.|++|++|-+
T Consensus       533 kVyflDtlKF-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL  579 (888)
T KOG0306|consen  533 KVYFLDTLKF-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL  579 (888)
T ss_pred             EEEEecceee-eeeecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence            9998877543 3468999999999999999999999999999999975

>KOG0293|consensus

Probab=100.00  E-value=8.1e-39  Score=274.60  Aligned_cols=298  Identities=19%  Similarity=0.280  Sum_probs=233.9

Q ss_pred             CCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEE
Q psy13076         35 NPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVI  114 (423)
Q Consensus        35 ~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (423)
                      .|.+..+++..|.++|.-+.||++|++|||+++|.+..+|.+....-                                 
T Consensus       212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~---------------------------------  258 (519)
T KOG0293|consen  212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH---------------------------------  258 (519)
T ss_pred             CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc---------------------------------
Confidence            35666778999999999999999999999999999999998743100                                 


Q ss_pred             EEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEE
Q psy13076        115 IRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG  194 (423)
Q Consensus       115 i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~  194 (423)
                            -++.+++.+|..+|..+.||||.+|+++|+.|..+++||+.+++...... .+++..+.+.+|.|||..     
T Consensus       259 ------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~pDg~~-----  326 (519)
T KOG0293|consen  259 ------FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLGFSVSSCAWCPDGFR-----  326 (519)
T ss_pred             ------eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCcCCCcceeEEccCCce-----
Confidence                  12345678999999999999999999999999999999998876543211 112344555666665543     


Q ss_pred             cCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccc-ccCeEEEEECCC
Q psy13076        195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH-SRFVQAVRYSPS  273 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~-~~~i~~l~~s~~  273 (423)
                                                              +++|+.|++|..|+...... ...++. ...|..++.++|
T Consensus       327 ----------------------------------------~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~D  365 (519)
T KOG0293|consen  327 ----------------------------------------FVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYD  365 (519)
T ss_pred             ----------------------------------------eEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCC
Confidence                                                    56677777777776543221 111111 234788999999


Q ss_pred             CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEee
Q psy13076        274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ  353 (423)
Q Consensus       274 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~  353 (423)
                      |+++++...|..|++++..+......+.   -...|+++..|.+++++++.-.+..+++||++..+.+..+....+....
T Consensus       366 gk~vl~v~~d~~i~l~~~e~~~dr~lis---e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fi  442 (519)
T KOG0293|consen  366 GKYVLLVTVDKKIRLYNREARVDRGLIS---EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFI  442 (519)
T ss_pred             CcEEEEEecccceeeechhhhhhhcccc---ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceE
Confidence            9999999999999999987765543332   2467999999999999999999999999999999888888766555544


Q ss_pred             EEEEEe--cCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCC-eEEEecCCCcEEEeeCC
Q psy13076        354 QVSCLW--QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAK  422 (423)
Q Consensus       354 ~~~~~~--~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~-~l~s~s~D~~i~~W~~~  422 (423)
                      .-+|..  +..++++|+.|+.|++|+...+ .++..+.||.+.|++++|+|..+ ++||+|+||+||||.+.
T Consensus       443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  443 IRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             EEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            445542  5678999999999999998875 66889999999999999999765 68999999999999875

>KOG0273|consensus

Probab=100.00  E-value=8.1e-38  Score=272.72  Aligned_cols=283  Identities=22%  Similarity=0.384  Sum_probs=235.2

Q ss_pred             eeeEEE-E--eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076          8 QQVSCL-W--QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus         8 ~~~~~~-~--~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      ++|++. |  ||.+||+|+.||.+++|+.+  ..++.+|..|++||++|.|+..|.+|+|++-|+++.+||..++.+...
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~  313 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ  313 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence            555555 7  79999999999999999975  567889999999999999999999999999999999999988876655


Q ss_pred             ccCCCCC-CceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076         85 LPRTQRG-QPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        85 ~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~  162 (423)
                      +..+... -.+-  +-. ...|+.+ .+..+.+..+........+.||.++|++++|.|.|..|+|++.|++++||+...
T Consensus       314 f~~~s~~~lDVd--W~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  314 FEFHSAPALDVD--WQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             eeeccCCccceE--Eec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence            5432221 1111  111 1234433 356778888888888899999999999999999999999999999999999866


Q ss_pred             CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076        163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                      ....  ..++.+..+|..+.|+|+|+.                                    ..+|.....+++++.|+
T Consensus       391 ~~~~--~~l~~Hskei~t~~wsp~g~v------------------------------------~~n~~~~~~l~sas~ds  432 (524)
T KOG0273|consen  391 SNSV--HDLQAHSKEIYTIKWSPTGPV------------------------------------TSNPNMNLMLASASFDS  432 (524)
T ss_pred             Ccch--hhhhhhccceeeEeecCCCCc------------------------------------cCCCcCCceEEEeecCC
Confidence            5443  334556678999999998752                                    12344555799999999


Q ss_pred             eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEE
Q psy13076        243 TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL  322 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  322 (423)
                      ++++||.....+...+..|..+|.+++|+|+|+|+|+|+.||.|.+|+.++++.++...   ..+.|..++|+.+|..|.
T Consensus       433 tV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~---~~~~Ifel~Wn~~G~kl~  509 (524)
T KOG0273|consen  433 TVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ---GTGGIFELCWNAAGDKLG  509 (524)
T ss_pred             eEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec---CCCeEEEEEEcCCCCEEE
Confidence            99999998888888899999999999999999999999999999999999999988774   467799999999999999


Q ss_pred             EEeCCCcEEEEecC
Q psy13076        323 TASGDKTCKLWDIE  336 (423)
Q Consensus       323 s~s~d~~i~iwd~~  336 (423)
                      .+-.|+.+++-|++
T Consensus       510 ~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  510 ACASDGSVCVLDLR  523 (524)
T ss_pred             EEecCCCceEEEec
Confidence            99999999999875

>KOG0295|consensus

Probab=100.00  E-value=4.1e-38  Score=266.31  Aligned_cols=313  Identities=24%  Similarity=0.337  Sum_probs=260.8

Q ss_pred             CEEEEEeccceEEEEeccCCC-CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceE
Q psy13076         17 DYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIV   95 (423)
Q Consensus        17 ~~~~~~~~dg~i~~~d~~~~~-~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~   95 (423)
                      +=++.+.-.|+.+..+...|+ ...+.+.||..+|+.+-|.|+..++++++.|.+|++||..++.+.             
T Consensus        77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e-------------  143 (406)
T KOG0295|consen   77 DELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE-------------  143 (406)
T ss_pred             cccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh-------------
Confidence            345555666777766655444 455678899999999999999999999999999999999887553             


Q ss_pred             EeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCC
Q psy13076         96 LGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG  175 (423)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  175 (423)
                                                   ..++||++.+..+.|+..|+++|+++.|-.+++||..+....         
T Consensus       144 -----------------------------~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c---------  185 (406)
T KOG0295|consen  144 -----------------------------RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRC---------  185 (406)
T ss_pred             -----------------------------hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHH---------
Confidence                                         346789999999999999999999999999999998653111         


Q ss_pred             CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK  255 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~  255 (423)
                                                          +..+.+|...|.++.|-|.+.+ +++++.|++|+.||.......
T Consensus       186 ------------------------------------~ks~~gh~h~vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv  228 (406)
T KOG0295|consen  186 ------------------------------------IKSLIGHEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCV  228 (406)
T ss_pred             ------------------------------------HHHhcCcccceeeEEEEecCCe-eeecccccceeEEecccceeE
Confidence                                                1112234445556666666654 889999999999999999999


Q ss_pred             eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCC---------------CCe
Q psy13076        256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD---------------GTQ  320 (423)
Q Consensus       256 ~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~---------------~~~  320 (423)
                      .++.+|.++|..++.+.||..+|+++.|.++++|-..++++...+.  .|...|.+++|.|.               +++
T Consensus       229 ~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR--~hEh~vEci~wap~~~~~~i~~at~~~~~~~~  306 (406)
T KOG0295|consen  229 KTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR--EHEHPVECIAWAPESSYPSISEATGSTNGGQV  306 (406)
T ss_pred             EeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh--ccccceEEEEecccccCcchhhccCCCCCccE
Confidence            9999999999999999999999999999999999999987766664  48888999999773               369


Q ss_pred             EEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEe
Q psy13076        321 LLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALAL  400 (423)
Q Consensus       321 l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~  400 (423)
                      +++++.|++||+||+.++.++.++.. +..-...+++.|.|+||+++..|+.+++||+++... .+.+..|+.-|++++|
T Consensus       307 l~s~SrDktIk~wdv~tg~cL~tL~g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c-mk~~~ah~hfvt~lDf  384 (406)
T KOG0295|consen  307 LGSGSRDKTIKIWDVSTGMCLFTLVG-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC-MKTLEAHEHFVTSLDF  384 (406)
T ss_pred             EEeecccceEEEEeccCCeEEEEEec-ccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee-eeccCCCcceeEEEec
Confidence            99999999999999999999888753 334455677788999999999999999999998644 5778899999999999


Q ss_pred             cCCCCeEEEecCCCcEEEeeC
Q psy13076        401 SPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       401 sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      +-+..+++||+-|+++++|.-
T Consensus       385 h~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  385 HKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCCCceEEeccccceeeeeec
Confidence            999999999999999999964

>KOG0265|consensus

Probab=100.00  E-value=1.5e-37  Score=256.74  Aligned_cols=289  Identities=22%  Similarity=0.317  Sum_probs=230.9

Q ss_pred             ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         39 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        39 ~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      |+..+.||+++|.++.|+|+|..+||||.|..|.+|++-..+                      ++              
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc----------------------eN--------------   82 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC----------------------EN--------------   82 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------cc--------------
Confidence            455678999999999999999999999999999999974311                      00              


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                           ...+.+|++.|..+.|.+|+..+++++.|.+++.||+++++...+..  .+...|+++                 
T Consensus        83 -----~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k--~h~~~vNs~-----------------  138 (338)
T KOG0265|consen   83 -----FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK--GHTSFVNSL-----------------  138 (338)
T ss_pred             -----eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc--cccceeeec-----------------
Confidence                 11345899999999999999999999999999999999887654322  222333332                 


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEE
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFA  278 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~  278 (423)
                                                 .-..-++.++.+++.|+++++||.+.-....++ ..+..++++.|..++..+.
T Consensus       139 ---------------------------~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  139 ---------------------------DPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             ---------------------------CccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEEEeccccccee
Confidence                                       222234556788999999999998743322222 2345589999999999999


Q ss_pred             EEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc----ceeeeeeeC-ceeEee
Q psy13076        279 SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK----SAVSEFLMG-NQVEDQ  353 (423)
Q Consensus       279 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~----~~i~~~~~~-~~~~~~  353 (423)
                      +|+-|+.|++||++.......+.  +|...|+.+..+|+|.++.+.+.|.++++||++..    .++.-+..+ +.....
T Consensus       191 sggIdn~ikvWd~r~~d~~~~ls--Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn  268 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKNDGLYTLS--GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN  268 (338)
T ss_pred             eccccCceeeeccccCcceEEee--cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence            99999999999999888888774  79999999999999999999999999999998753    334444322 223334


Q ss_pred             EEEEE--ecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEE
Q psy13076        354 QVSCL--WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR  418 (423)
Q Consensus       354 ~~~~~--~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~  418 (423)
                      .+.|.  +++.++-+|+.|+.+++||... ...++++.||.+.|++++|+|...+|.+++.|++|.+
T Consensus       269 lL~cswsp~~~~i~ags~dr~vyvwd~~~-r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  269 LLKCSWSPNGTKITAGSADRFVYVWDTTS-RRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             cceeeccCCCCccccccccceEEEeeccc-ccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            44554  4788999999999999999877 4557899999999999999999999999999999876

>KOG0279|consensus

Probab=100.00  E-value=1.8e-36  Score=247.94  Aligned_cols=282  Identities=19%  Similarity=0.300  Sum_probs=230.3

Q ss_pred             eeEEEE-eCCEEEEEeccceEEEEeccC----CCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076          9 QVSCLW-QGDYLLTVSLSGFISYLDVNN----PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus         9 ~~~~~~-~~~~~~~~~~dg~i~~~d~~~----~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      ++++.. +-..++++++|..|-+|++..    -..+.+.|+||...|..+..++++++.+|+|+|+++|+||+++++.  
T Consensus        20 ~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~--   97 (315)
T KOG0279|consen   20 ALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES--   97 (315)
T ss_pred             EEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE--
Confidence            455555 578999999999999999852    2335778999999999999999999999999999999999987532  


Q ss_pred             cccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC
Q psy13076         84 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~  163 (423)
                                                              ...|.||...|.+++|+||++.++||+.|.+|++|+... 
T Consensus        98 ----------------------------------------t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-  136 (315)
T KOG0279|consen   98 ----------------------------------------TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-  136 (315)
T ss_pred             ----------------------------------------EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-
Confidence                                                    224678999999999999999999999999999999854 


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT  243 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~  243 (423)
                      .+..........+-|.++.|+|+....+.++.+.++...+|+.+..+......+|...++.++++|++.. +++|+.|+.
T Consensus       137 ~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGsl-casGgkdg~  215 (315)
T KOG0279|consen  137 VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSL-CASGGKDGE  215 (315)
T ss_pred             cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCE-EecCCCCce
Confidence            3333333333367899999999975556666677788899999888888889999999999999999985 889999999


Q ss_pred             EEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc-------ccCCCeEEEEECC
Q psy13076        244 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-------AHKGGVYAVAWKP  316 (423)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~~~i~~l~~~~  316 (423)
                      +.+||....+..+ ..++...|.+++|+|+--.|+.+ .+..|+|||+.+...+.++...       +..-.+.+++|++
T Consensus       216 ~~LwdL~~~k~ly-sl~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~  293 (315)
T KOG0279|consen  216 AMLWDLNEGKNLY-SLEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA  293 (315)
T ss_pred             EEEEEccCCceeE-eccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC
Confidence            9999988766543 44677889999999986555544 5566999999998877665422       1122356889999


Q ss_pred             CCCeEEEEeCCCcEEEEecC
Q psy13076        317 DGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       317 ~~~~l~s~s~d~~i~iwd~~  336 (423)
                      +|+.|+++-.|+.|++|.+.
T Consensus       294 dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  294 DGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             CCcEEEeeecCCcEEEEEee
Confidence            99999999999999999874

>KOG0273|consensus

Probab=100.00  E-value=3.5e-36  Score=262.54  Aligned_cols=332  Identities=24%  Similarity=0.367  Sum_probs=266.6

Q ss_pred             CCCceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCc--ceee--cccC---------CCCCCceEEeeCCC
Q psy13076         36 PSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTE--YIFA--TLPR---------TQRGQPIVLGGDPK  101 (423)
Q Consensus        36 ~~~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~--~~~~--~~~~---------~~~~~~~~~~~~~~  101 (423)
                      +....+.++ |+.+|.+++|+|..+ +|++|+.|-+.|+|++...  .+..  .+.+         ........+.++.+
T Consensus       168 ~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~  246 (524)
T KOG0273|consen  168 PSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND  246 (524)
T ss_pred             cccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC
Confidence            444455666 999999999999876 9999999999999998631  1000  0000         01124557889999


Q ss_pred             CCeEEEec-CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeE
Q psy13076        102 GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD  180 (423)
Q Consensus       102 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~  180 (423)
                      |..+++.. +..+++|+. ++.+..+|..|+++|.+++|+..|.|+++++.|+++.+||..+++......++.  .+..+
T Consensus       247 G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s--~~~lD  323 (524)
T KOG0273|consen  247 GTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS--APALD  323 (524)
T ss_pred             CCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc--CCccc
Confidence            99988865 678899985 567888999999999999999999999999999999999998877655444442  22222


Q ss_pred             EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc
Q psy13076        181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE  260 (423)
Q Consensus       181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~  260 (423)
                      |.|-.                                            +.  .+++++.|+.|+++....-....++.+
T Consensus       324 VdW~~--------------------------------------------~~--~F~ts~td~~i~V~kv~~~~P~~t~~G  357 (524)
T KOG0273|consen  324 VDWQS--------------------------------------------ND--EFATSSTDGCIHVCKVGEDRPVKTFIG  357 (524)
T ss_pred             eEEec--------------------------------------------Cc--eEeecCCCceEEEEEecCCCcceeeec
Confidence            33321                                            22  378889999999998666666777888


Q ss_pred             cccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC---------CeEEEEeCCCcEE
Q psy13076        261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG---------TQLLTASGDKTCK  331 (423)
Q Consensus       261 ~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~---------~~l~s~s~d~~i~  331 (423)
                      |.+.|.++.|+|.|.+|+++|.|+++++|.+........+  .+|+..|..+.|+|+|         ..|++++.|++|+
T Consensus       358 H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l--~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~  435 (524)
T KOG0273|consen  358 HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL--QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK  435 (524)
T ss_pred             ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh--hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEE
Confidence            9999999999999999999999999999998888777777  4799999999999964         4799999999999


Q ss_pred             EEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEec
Q psy13076        332 LWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS  411 (423)
Q Consensus       332 iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s  411 (423)
                      +||+.++.++.+|. .++.....++++++|.++++|+.||.+.+|++++.. .++...+ ...|..++|+.+|.+|..+-
T Consensus       436 lwdv~~gv~i~~f~-kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~-l~~s~~~-~~~Ifel~Wn~~G~kl~~~~  512 (524)
T KOG0273|consen  436 LWDVESGVPIHTLM-KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK-LVKSYQG-TGGIFELCWNAAGDKLGACA  512 (524)
T ss_pred             EEEccCCceeEeec-cCCCceEEEEecCCCcEEEecCCCCeeEeccccchh-eeEeecC-CCeEEEEEEcCCCCEEEEEe
Confidence            99999999999874 344556678889999999999999999999998853 3455444 56799999999999998888


Q ss_pred             CCCcEEEeeCC
Q psy13076        412 HDGFITRWNAK  422 (423)
Q Consensus       412 ~D~~i~~W~~~  422 (423)
                      .|+.+++=|+.
T Consensus       513 sd~~vcvldlr  523 (524)
T KOG0273|consen  513 SDGSVCVLDLR  523 (524)
T ss_pred             cCCCceEEEec
Confidence            89999987753

>KOG0263|consensus

Probab=100.00  E-value=3.6e-37  Score=284.87  Aligned_cols=285  Identities=20%  Similarity=0.348  Sum_probs=238.4

Q ss_pred             CCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEE
Q psy13076         36 PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVII  115 (423)
Q Consensus        36 ~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  115 (423)
                      |.-+.+++..-...++|+.|++++.+||-|-.|..|++|.+...++ +.++.......      ++    .-+.+..+.+
T Consensus       367 pSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl-~~lk~~~~l~~------~d----~~sad~~~~~  435 (707)
T KOG0263|consen  367 PSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL-KKLKDASDLSN------ID----TESADVDVDM  435 (707)
T ss_pred             CcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhh-ccccchhhhcc------cc----ccccchhhhh
Confidence            4445666766677899999999999999999999999999986532 22221110000      00    0011222344


Q ss_pred             EecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076        116 RNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE  195 (423)
Q Consensus       116 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~  195 (423)
                      -|.+.+-....+.||.++|....|+|+.++|++++.|+++|+|.+.+..+...  +.++..||..+.|+|-|-++++++.
T Consensus       436 ~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~--y~GH~~PVwdV~F~P~GyYFatas~  513 (707)
T KOG0263|consen  436 LDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI--YKGHLAPVWDVQFAPRGYYFATASH  513 (707)
T ss_pred             ccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEE--ecCCCcceeeEEecCCceEEEecCC
Confidence            45555566677999999999999999999999999999999999988776544  4477899999999999999999855


Q ss_pred             CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC
Q psy13076        196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS  275 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  275 (423)
                      +  ...++|..+...+++.+.+|.+.+.|+.|+|+..| +++||.|.++++||..+....+.+.+|..+|.+++|||+|+
T Consensus       514 D--~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr  590 (707)
T KOG0263|consen  514 D--QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR  590 (707)
T ss_pred             C--ceeeeeecccCCchhhhcccccccceEEECCcccc-cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc
Confidence            4  44689999999999999999999999999999997 89999999999999998888888999999999999999999


Q ss_pred             EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      +|++|+.||.|++||+.+++.+..+.  +|++.|.++.|+.+|..||+|+.|.+|++||+..-
T Consensus       591 ~LaSg~ed~~I~iWDl~~~~~v~~l~--~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  591 YLASGDEDGLIKIWDLANGSLVKQLK--GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             eEeecccCCcEEEEEcCCCcchhhhh--cccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999999999999999888875  58999999999999999999999999999998754

>KOG0643|consensus

Probab=100.00  E-value=1.3e-36  Score=247.34  Aligned_cols=290  Identities=18%  Similarity=0.312  Sum_probs=223.1

Q ss_pred             ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076         42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP  121 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (423)
                      .++||+.|++.+.++.+|++|+|++.|.++.||-..+++.                                        
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer----------------------------------------   44 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER----------------------------------------   44 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce----------------------------------------
Confidence            7899999999999999999999999999999997654432                                        


Q ss_pred             cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        122 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       122 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                        +-++.||++.|+++..+.+.++++||+.|.++++||+++++++...+.   +.+|..+.|+++|..++++.+..-.. 
T Consensus        45 --lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~---~~~Vk~~~F~~~gn~~l~~tD~~mg~-  118 (327)
T KOG0643|consen   45 --LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT---NSPVKRVDFSFGGNLILASTDKQMGY-  118 (327)
T ss_pred             --eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec---CCeeEEEeeccCCcEEEEEehhhcCc-
Confidence              336789999999999999999999999999999999999998776654   46899999999999887765432110 


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-------ceeeeeccccccCeEEEEECCCC
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-------FKFKMTKQEHSRFVQAVRYSPSG  274 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-------~~~~~~~~~~~~~i~~l~~s~~g  274 (423)
                                                             .+.|.+++.+.       ....+....+...++.+-|.|-+
T Consensus       119 ---------------------------------------~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~  159 (327)
T KOG0643|consen  119 ---------------------------------------TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG  159 (327)
T ss_pred             ---------------------------------------ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence                                                   11122222210       11112223344668889999999


Q ss_pred             CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeE
Q psy13076        275 SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQ  354 (423)
Q Consensus       275 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~  354 (423)
                      ++|++|..||.|.+||.++++....-. ..|...|+++.++|+..+++++|.|.+.++||..+.++++++....++....
T Consensus       160 ~~ii~Ghe~G~is~~da~~g~~~v~s~-~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa  238 (327)
T KOG0643|consen  160 ETIIAGHEDGSISIYDARTGKELVDSD-EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA  238 (327)
T ss_pred             CEEEEecCCCcEEEEEcccCceeeech-hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence            999999999999999999987654432 4688899999999999999999999999999999999999997766655444


Q ss_pred             EEEEecCcEEEEEeCCCc--E------------EEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        355 VSCLWQGDYLLTVSLSGF--I------------SYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       355 ~~~~~~g~~l~~~~~~~~--i------------~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      ++  |.-+.++.|.....  +            ++|++.. +.++...+||-+||++++|+|+|+..+|||.||+||+--
T Consensus       239 is--P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~-eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  239 IS--PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF-EEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             cc--cccceEEecCCceeeeeeeecccccchhhhHHHHHH-HHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence            43  34444444432211  1            1122211 233566789999999999999999999999999999853

>KOG0284|consensus

Probab=100.00  E-value=5.7e-38  Score=269.08  Aligned_cols=282  Identities=26%  Similarity=0.391  Sum_probs=227.1

Q ss_pred             cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc
Q psy13076         47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI  126 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  126 (423)
                      +-+|..|.|.|+|+.|++|+.-|.+.+||..+.    +                                      ...+
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f----n--------------------------------------FEti  133 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF----N--------------------------------------FETI  133 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCcee----e--------------------------------------HHHH
Confidence            458999999999999999999999999987431    0                                      0124


Q ss_pred             ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEee
Q psy13076        127 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS  206 (423)
Q Consensus       127 ~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~  206 (423)
                      +..|.++|+++.|+++|.+++||+.+|.||+|+..-... .... ..+...|++++|+|+                    
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~-ahh~eaIRdlafSpn--------------------  191 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQ-AHHAEAIRDLAFSPN--------------------  191 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHhh-HhhhhhhheeccCCC--------------------
Confidence            567999999999999999999999999999999643221 1111 112244555655553                    


Q ss_pred             cCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeE
Q psy13076        207 ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV  286 (423)
Q Consensus       207 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i  286 (423)
                                              +. .+++||.|++|++||....+....+.+|.-.|.+++|+|.-.++++||.|..|
T Consensus       192 ------------------------Ds-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlV  246 (464)
T KOG0284|consen  192 ------------------------DS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLV  246 (464)
T ss_pred             ------------------------Cc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCcee
Confidence                                    22 47899999999999987777767778999999999999999999999999999


Q ss_pred             EEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCc-eeEeeEEEEEecCcEEE
Q psy13076        287 FLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN-QVEDQQVSCLWQGDYLL  365 (423)
Q Consensus       287 ~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~l~  365 (423)
                      ++||.+++.++.++  .+|+..|..+.|.|++++|+|+|.|..++++|+++.+.+..+.... .+....+... ....+.
T Consensus       247 KlWDprSg~cl~tl--h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~-~~~lft  323 (464)
T KOG0284|consen  247 KLWDPRSGSCLATL--HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL-NESLFT  323 (464)
T ss_pred             EeecCCCcchhhhh--hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccc-ccccee
Confidence            99999999999887  4699999999999999999999999999999999766665554222 2222222222 456678


Q ss_pred             EEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        366 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       366 ~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      +|+.||.+.+|.+...+.......+|...|++++|+|=|-+|+||+.|.++++|.
T Consensus       324 sgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  324 SGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             eccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            8999999999998754444455679999999999999999999999999999995

>KOG0282|consensus

Probab=100.00  E-value=2.2e-37  Score=270.96  Aligned_cols=316  Identities=17%  Similarity=0.279  Sum_probs=250.2

Q ss_pred             eCCEEEEEeccceEEEE--eccCCCCceeecccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeecccCCCCC
Q psy13076         15 QGDYLLTVSLSGFISYL--DVNNPSTPIRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG   91 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~--d~~~~~~~~~~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~   91 (423)
                      +|+.-+....|-.+.+-  .-..|.+.+.++.||++.|+++.|.| .+.+|+|++.|+.|+|||+-.             
T Consensus       180 q~r~~l~~P~dv~vnlR~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-------------  246 (503)
T KOG0282|consen  180 QGRSYLQKPKDVGVNLREERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-------------  246 (503)
T ss_pred             cccccccCCcccCCccccceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-------------
Confidence            34444444444333332  22246777889999999999999999 789999999999999999743             


Q ss_pred             CceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee
Q psy13076         92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF  171 (423)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  171 (423)
                                                  .+.++.+|.||..+|..++|+++|..++|++.|+.|++||++++++......
T Consensus       247 ----------------------------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~  298 (503)
T KOG0282|consen  247 ----------------------------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL  298 (503)
T ss_pred             ----------------------------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec
Confidence                                        2345567889999999999999999999999999999999999887654332


Q ss_pred             cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC
Q psy13076        172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP  251 (423)
Q Consensus       172 ~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~  251 (423)
                      .   ..+.++.|+|+                                            ++..+++|..|+.|+.||.+.
T Consensus       299 ~---~~~~cvkf~pd--------------------------------------------~~n~fl~G~sd~ki~~wDiRs  331 (503)
T KOG0282|consen  299 D---KVPTCVKFHPD--------------------------------------------NQNIFLVGGSDKKIRQWDIRS  331 (503)
T ss_pred             C---CCceeeecCCC--------------------------------------------CCcEEEEecCCCcEEEEeccc
Confidence            2   23445555554                                            434577788899999999998


Q ss_pred             ceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEE
Q psy13076        252 FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK  331 (423)
Q Consensus       252 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~  331 (423)
                      .++...+..|-..|..+.|-++|+++++.+.|+.+++|+...+..++.+.. .+...+.++..+|++++++.-+.|..|.
T Consensus       332 ~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~aQs~dN~i~  410 (503)
T KOG0282|consen  332 GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFAAQSMDNYIA  410 (503)
T ss_pred             hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc-hhhccCcceecCCCCCeehhhccCceEE
Confidence            888888889999999999999999999999999999999988776655443 2334567899999999999999999999


Q ss_pred             EEecCCcceee--eeeeCce--eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC-Ce
Q psy13076        332 LWDIETKSAVS--EFLMGNQ--VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR-GT  406 (423)
Q Consensus       332 iwd~~~~~~i~--~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~-~~  406 (423)
                      +|.+...-...  +...++.  .-...+.++++|.+|++|+.+|.+.+||.++.. .+..+++|.+++..+.|+|.. ..
T Consensus       411 ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k-l~~~lkah~~~ci~v~wHP~e~Sk  489 (503)
T KOG0282|consen  411 IFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK-LVSKLKAHDQPCIGVDWHPVEPSK  489 (503)
T ss_pred             EEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh-hhhccccCCcceEEEEecCCCcce
Confidence            99865431111  1112222  224456778999999999999999999998864 457889999999999999975 57


Q ss_pred             EEEecCCCcEEEee
Q psy13076        407 VFTGSHDGFITRWN  420 (423)
Q Consensus       407 l~s~s~D~~i~~W~  420 (423)
                      +||+|.||.|++|+
T Consensus       490 vat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  490 VATCGWDGLIKIWD  503 (503)
T ss_pred             eEecccCceeEecC
Confidence            99999999999996

>KOG0295|consensus

Probab=100.00  E-value=3.2e-36  Score=254.87  Aligned_cols=288  Identities=21%  Similarity=0.287  Sum_probs=239.5

Q ss_pred             EEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCC-cceeecccCCCC
Q psy13076         12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT-EYIFATLPRTQR   90 (423)
Q Consensus        12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~-~~~~~~~~~~~~   90 (423)
                      .+|+=-.+++|+.|++|++||..+ .+....|+||.+.|..++|+..|.+|+++++|-.+++||+++ .++++.+.++..
T Consensus       116 ~hp~~~~v~~as~d~tikv~D~~t-g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h  194 (406)
T KOG0295|consen  116 FHPSEALVVSASEDATIKVFDTET-GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH  194 (406)
T ss_pred             eccCceEEEEecCCceEEEEEccc-hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence            345667788888999999999987 556889999999999999999999999999999999999987 445555544333


Q ss_pred             CCceEEeeCCCCCeEEEec-CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe
Q psy13076         91 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN  169 (423)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~  169 (423)
                      + .-.+.+-|.|..++.++ ++++++|+..++.+..+|.+|..=|..++.+.||.++|+++.|.++++|-+.++++..  
T Consensus       195 ~-vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~--  271 (406)
T KOG0295|consen  195 G-VSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA--  271 (406)
T ss_pred             c-eeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhh--
Confidence            2 23455667777666654 6899999999999999999999999999999999999999999999999998875432  


Q ss_pred             eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC
Q psy13076        170 EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG  249 (423)
Q Consensus       170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~  249 (423)
                      .+..+..+|.+++|.|...+--+.                    ...+.          .++...+.+++.|++|++||.
T Consensus       272 ~lR~hEh~vEci~wap~~~~~~i~--------------------~at~~----------~~~~~~l~s~SrDktIk~wdv  321 (406)
T KOG0295|consen  272 ELREHEHPVECIAWAPESSYPSIS--------------------EATGS----------TNGGQVLGSGSRDKTIKIWDV  321 (406)
T ss_pred             hhhccccceEEEEecccccCcchh--------------------hccCC----------CCCccEEEeecccceEEEEec
Confidence            333456789999999975421100                    00000          011124889999999999999


Q ss_pred             CCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCc
Q psy13076        250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT  329 (423)
Q Consensus       250 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~  329 (423)
                      +...+..++.+|.++|..++|+|.|+||+++..|+++++||+++.++.+.+.  +|..-+++++|+.+-.+++||+-|.+
T Consensus       322 ~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--ah~hfvt~lDfh~~~p~VvTGsVdqt  399 (406)
T KOG0295|consen  322 STGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--AHEHFVTSLDFHKTAPYVVTGSVDQT  399 (406)
T ss_pred             cCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--CCcceeEEEecCCCCceEEeccccce
Confidence            9999999999999999999999999999999999999999999999988885  78999999999999999999999999


Q ss_pred             EEEEec
Q psy13076        330 CKLWDI  335 (423)
Q Consensus       330 i~iwd~  335 (423)
                      +++|.-
T Consensus       400 ~KvwEc  405 (406)
T KOG0295|consen  400 VKVWEC  405 (406)
T ss_pred             eeeeec
Confidence            999974

>KOG0284|consensus

Probab=100.00  E-value=8.3e-37  Score=261.96  Aligned_cols=284  Identities=23%  Similarity=0.437  Sum_probs=236.5

Q ss_pred             CcccceeeEEEE--eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc
Q psy13076          3 NQVEDQQVSCLW--QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY   80 (423)
Q Consensus         3 ~~~~~~~~~~~~--~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~   80 (423)
                      |++.=-+-.+.|  +|+-|++|+..|.+.||+... ..-...+++|+++|.++.|++++.+++||+.||.||+|+.+-.-
T Consensus        93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             cccccceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence            344333444556  999999999999999998632 22233567999999999999999999999999999999864311


Q ss_pred             eeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccC-CcceEEEEEECCCCCEEEEEccCCcEEEEE
Q psy13076         81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE-HSCAVNVAKYSPSGFYIASGDISGKVRIWD  159 (423)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd  159 (423)
                                                                 .+++.. |...|+.++|+|+...|+|++.|++|+|||
T Consensus       172 -------------------------------------------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd  208 (464)
T KOG0284|consen  172 -------------------------------------------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD  208 (464)
T ss_pred             -------------------------------------------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence                                                       112233 448999999999999999999999999999


Q ss_pred             cCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe
Q psy13076        160 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS  239 (423)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s  239 (423)
                      ....+...  .+.+++..|++++|+|....+++.+.+  ....+|+..++.++..+..|...|..+.|+|++++ |+++|
T Consensus       209 f~~~kee~--vL~GHgwdVksvdWHP~kgLiasgskD--nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~-Llt~s  283 (464)
T KOG0284|consen  209 FRMPKEER--VLRGHGWDVKSVDWHPTKGLIASGSKD--NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNW-LLTGS  283 (464)
T ss_pred             ccCCchhh--eeccCCCCcceeccCCccceeEEccCC--ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCe-eEEcc
Confidence            87655432  235667889999999998777766544  47889999999999999999999999999999977 99999


Q ss_pred             CCCeEEEEcCCCceeeeeccccccCeEEEEECCCC-CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC
Q psy13076        240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG  318 (423)
Q Consensus       240 ~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~  318 (423)
                      .|..+++||.+..+-...+.+|...++++.|+|-. .+|.+|+.||.|..|.....+.+..+. .+|.+.|++++|+|-|
T Consensus       284 kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlG  362 (464)
T KOG0284|consen  284 KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLG  362 (464)
T ss_pred             CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccc
Confidence            99999999998777777888999999999999965 588999999999999987555555554 4899999999999999


Q ss_pred             CeEEEEeCCCcEEEEecC
Q psy13076        319 TQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       319 ~~l~s~s~d~~i~iwd~~  336 (423)
                      ..|++|+.|+++|+|.-.
T Consensus       363 hil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  363 HILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eeEeecCCCcceeeeccC
Confidence            999999999999999754

>KOG0286|consensus

Probab=100.00  E-value=9.2e-35  Score=239.40  Aligned_cols=283  Identities=20%  Similarity=0.267  Sum_probs=235.7

Q ss_pred             eEEEE--eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076         10 VSCLW--QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus        10 ~~~~~--~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      .+++|  |.++|+++|.||.+-+||..+..+ ...+.--..-|.+++|+|.++++|.|+-|+...|+++.+.+-.     
T Consensus        59 ~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK-~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~-----  132 (343)
T KOG0286|consen   59 YAMDWSTDSRRIVSASQDGKLIVWDSFTTNK-VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE-----  132 (343)
T ss_pred             eeeEecCCcCeEEeeccCCeEEEEEcccccc-eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc-----
Confidence            45667  999999999999999999887554 4456656778999999999999999999999999998753110     


Q ss_pred             CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeE
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL  167 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~  167 (423)
                                    |                 .-+..+++.+|++-+.+.+|-+| ..++|++.|.+.-+||+++++.. 
T Consensus       133 --------------g-----------------~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~-  179 (343)
T KOG0286|consen  133 --------------G-----------------NVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQT-  179 (343)
T ss_pred             --------------c-----------------cceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEE-
Confidence                          0                 11234568899999999999885 57889999999999999887654 


Q ss_pred             EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076        168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF  247 (423)
Q Consensus       168 ~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~  247 (423)
                       ..|++|.+-|.+++++|                                            .....+++|+.|+..++|
T Consensus       180 -~~f~GH~gDV~slsl~p--------------------------------------------~~~ntFvSg~cD~~aklW  214 (343)
T KOG0286|consen  180 -QVFHGHTGDVMSLSLSP--------------------------------------------SDGNTFVSGGCDKSAKLW  214 (343)
T ss_pred             -EEecCCcccEEEEecCC--------------------------------------------CCCCeEEecccccceeee
Confidence             34555555555555555                                            222347889999999999


Q ss_pred             cCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      |.+......++.+|...|++++|.|+|.-+++|+.|+.+++||++..+.+..+.......+|++++|+..|++|++|..|
T Consensus       215 D~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d  294 (343)
T KOG0286|consen  215 DVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD  294 (343)
T ss_pred             eccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence            99998999999999999999999999999999999999999999999888777665667789999999999999999999


Q ss_pred             CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEe
Q psy13076        328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLD  377 (423)
Q Consensus       328 ~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~  377 (423)
                      .++.+||.-.++.+..+. ++..+...+.+.++|..+++|+.|.++++|.
T Consensus       295 ~~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  295 FTCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CceeEeeccccceEEEee-ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999998888776654 5556667777889999999999999999994

>KOG0266|consensus

Probab=100.00  E-value=5.1e-35  Score=276.95  Aligned_cols=294  Identities=24%  Similarity=0.426  Sum_probs=237.7

Q ss_pred             ecccc-cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC
Q psy13076         42 VIKGH-NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN  120 (423)
Q Consensus        42 ~~~gh-~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  120 (423)
                      .+.+| ...|.++.|+++|+.+++++.|+.+++|+.++...                                       
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------------------------  193 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------------------------  193 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------------------------
Confidence            44454 78999999999999999999999999999855321                                       


Q ss_pred             CcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        121 PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                       .....+.+|...|+.++|+|+++++++++.|++||+||++..... ..                               
T Consensus       194 -~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~-~~-------------------------------  240 (456)
T KOG0266|consen  194 -NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN-LK-------------------------------  240 (456)
T ss_pred             -hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE-EE-------------------------------
Confidence             112234689999999999999999999999999999998433111 11                               


Q ss_pred             eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEE
Q psy13076        201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASA  280 (423)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~  280 (423)
                                   .+++|...+++++|+|.+ ..+++|+.|++|++|+.+..++...+..|...|++++|+++|.+|+++
T Consensus       241 -------------~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~  306 (456)
T KOG0266|consen  241 -------------TLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA  306 (456)
T ss_pred             -------------EecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence                         223455555666666666 348899999999999999999999999999999999999999999999


Q ss_pred             EecCeEEEEECCCcc--ceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCcee--EeeEEE
Q psy13076        281 GFDGKVFLYDGASAD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQV--EDQQVS  356 (423)
Q Consensus       281 s~dg~i~vwd~~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~--~~~~~~  356 (423)
                      +.|+.|++||..++.  +...+........+..+.|+|++.+|++++.|+++++||+....++..+......  ......
T Consensus       307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence            999999999999988  3455543222226899999999999999999999999999999888777543332  122222


Q ss_pred             EEecCcEEEEEeCCCcEEEEecCCCCCceEEeccC-CCceeEEEecCCCCeEEEec--CCCcEEEeeCC
Q psy13076        357 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH-NKPITALALSPDRGTVFTGS--HDGFITRWNAK  422 (423)
Q Consensus       357 ~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~l~s~s--~D~~i~~W~~~  422 (423)
                      ....|.++++|+.++.|++||..+. ..+..+.+| ...+..++++|..+++++++  .|+.+++|..+
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            2458999999999999999999884 445678899 89999999999999999998  79999999753

>KOG0315|consensus

Probab=100.00  E-value=1.5e-35  Score=238.66  Aligned_cols=246  Identities=23%  Similarity=0.340  Sum_probs=192.2

Q ss_pred             EEEEeCCEEEEEeccceEEEEeccCCCC-ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076         11 SCLWQGDYLLTVSLSGFISYLDVNNPST-PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        11 ~~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      -+.+|+++||+| ..-.||++|++..+. |+.+|++|++.|+++.|..+|++++|||+||++||||+..-.+-+      
T Consensus        47 eiTpdk~~LAaa-~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR------  119 (311)
T KOG0315|consen   47 EITPDKKDLAAA-GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR------  119 (311)
T ss_pred             EEcCCcchhhhc-cCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch------
Confidence            355788888865 556899999986444 899999999999999999999999999999999999997522111      


Q ss_pred             CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe
Q psy13076         90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN  169 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~  169 (423)
                                                           .-.|..+|+++..+|+...|++|+.+|.|++||+.+..+....
T Consensus       120 -------------------------------------~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l  162 (311)
T KOG0315|consen  120 -------------------------------------NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL  162 (311)
T ss_pred             -------------------------------------hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence                                                 1236688999999999999999999999999999765432211


Q ss_pred             eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC
Q psy13076        170 EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG  249 (423)
Q Consensus       170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~  249 (423)
                       .+....+|.++...|||+.++.                                             +...|..++|+.
T Consensus       163 -iPe~~~~i~sl~v~~dgsml~a---------------------------------------------~nnkG~cyvW~l  196 (311)
T KOG0315|consen  163 -IPEDDTSIQSLTVMPDGSMLAA---------------------------------------------ANNKGNCYVWRL  196 (311)
T ss_pred             -CCCCCcceeeEEEcCCCcEEEE---------------------------------------------ecCCccEEEEEc
Confidence             1112245666666666665443                                             444455566653


Q ss_pred             C------CceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEE
Q psy13076        250 P------PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT  323 (423)
Q Consensus       250 ~------~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s  323 (423)
                      .      ++.....++.|...+..+.+|||++|||++|.|.+++||+.... ...++...+|..++++.+||.||+||++
T Consensus       197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvT  275 (311)
T KOG0315|consen  197 LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVT  275 (311)
T ss_pred             cCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEe
Confidence            2      23344457789999999999999999999999999999998877 2223333578999999999999999999


Q ss_pred             EeCCCcEEEEecCCcceeeeeeeC
Q psy13076        324 ASGDKTCKLWDIETKSAVSEFLMG  347 (423)
Q Consensus       324 ~s~d~~i~iwd~~~~~~i~~~~~~  347 (423)
                      |+.|+++|+||++.++.++.+...
T Consensus       276 assd~~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  276 ASSDHTARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             cCCCCceeecccccCceeeecCCc
Confidence            999999999999999887776433

>KOG0313|consensus

Probab=100.00  E-value=1.3e-35  Score=252.43  Aligned_cols=298  Identities=24%  Similarity=0.356  Sum_probs=227.9

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCC---CeEEEecCCCceEEeecCCcceeecccCCCCCC
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR---GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQ   92 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~---~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~   92 (423)
                      +++|+++++||.+++||..  ++.++.+.||.++|.+++|--..   ..++++|.|+++++|.++.++...         
T Consensus       115 ~~~IltgsYDg~~riWd~~--Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~---------  183 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLK--GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV---------  183 (423)
T ss_pred             CceEEEeecCCeeEEEecC--CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh---------
Confidence            7999999999999999975  67888999999999988885432   369999999999999887643211         


Q ss_pred             ceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeec
Q psy13076         93 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH  172 (423)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  172 (423)
                                                   +..+...||...|-++...++|..+++|+.|..|++|+.+....-   .+ 
T Consensus       184 -----------------------------~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~---~~-  230 (423)
T KOG0313|consen  184 -----------------------------KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEED---EL-  230 (423)
T ss_pred             -----------------------------hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccc---cc-
Confidence                                         112233499999999999999999999999999999994322110   00 


Q ss_pred             CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc
Q psy13076        173 PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF  252 (423)
Q Consensus       173 ~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~  252 (423)
                            .+..--+.++.           .+--...++..+-.+.+|..+|..+.|++.  ..+.+++.|.+|+.||....
T Consensus       231 ------E~~s~~rrk~~-----------~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  231 ------ESSSNRRRKKQ-----------KREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             ------cccchhhhhhh-----------hhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecc
Confidence                  00000000000           000001123455667899999999999983  45899999999999998766


Q ss_pred             eeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc-eecccccccCCCeEEEEECCCC-CeEEEEeCCCcE
Q psy13076        253 KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL-VSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTC  330 (423)
Q Consensus       253 ~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i  330 (423)
                      ........ +..++++.++|..++|++|+.|..|++||.+++.- +......+|+..|.++.|+|.. .+|++++.|+++
T Consensus       292 ~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~  370 (423)
T KOG0313|consen  292 GLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTV  370 (423)
T ss_pred             cceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeE
Confidence            65544433 45678999999999999999999999999987642 2233445799999999999955 678899999999


Q ss_pred             EEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe
Q psy13076        331 KLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG  410 (423)
Q Consensus       331 ~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~  410 (423)
                      ++||+++.+                                           .|++.+.+|.+.|.++.|+ ++..|+||
T Consensus       371 klWDvRS~k-------------------------------------------~plydI~~h~DKvl~vdW~-~~~~IvSG  406 (423)
T KOG0313|consen  371 KLWDVRSTK-------------------------------------------APLYDIAGHNDKVLSVDWN-EGGLIVSG  406 (423)
T ss_pred             EEEEeccCC-------------------------------------------CcceeeccCCceEEEEecc-CCceEEec
Confidence            999987643                                           3457788999999999999 66799999


Q ss_pred             cCCCcEEEeeC
Q psy13076        411 SHDGFITRWNA  421 (423)
Q Consensus       411 s~D~~i~~W~~  421 (423)
                      |.|++++++.-
T Consensus       407 GaD~~l~i~~~  417 (423)
T KOG0313|consen  407 GADNKLRIFKG  417 (423)
T ss_pred             cCcceEEEecc
Confidence            99999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=9.4e-34  Score=254.04  Aligned_cols=288  Identities=32%  Similarity=0.496  Sum_probs=228.7

Q ss_pred             eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076         40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE  119 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  119 (423)
                      +.++++|.++|.+++|+|++++|++++.||.|++|+.+++...                                     
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-------------------------------------   44 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-------------------------------------   44 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-------------------------------------
Confidence            3578899999999999999999999999999999998764321                                     


Q ss_pred             CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                           ..+..|...+..+.|+|+++++++++.|+.|++||..+.+....  +..+...+.++.|+               
T Consensus        45 -----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~---------------  102 (289)
T cd00200          45 -----RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT--LTGHTSYVSSVAFS---------------  102 (289)
T ss_pred             -----EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE--EeccCCcEEEEEEc---------------
Confidence                 12345777788999999999999999999999999876433221  11222334444444               


Q ss_pred             eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEE
Q psy13076        200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFAS  279 (423)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s  279 (423)
                                                   |++. .+++++.++.+.+|+....+.......|...+.+++|+|++.++++
T Consensus       103 -----------------------------~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  152 (289)
T cd00200         103 -----------------------------PDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS  152 (289)
T ss_pred             -----------------------------CCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEE
Confidence                                         4432 2555666889999998766666666678888999999999999999


Q ss_pred             EEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEe
Q psy13076        280 AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW  359 (423)
Q Consensus       280 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~  359 (423)
                      ++.|+.|++||.++++....+.  .|...+.+++|+|+++.+++++.|+.+++||++.++.+..+... ......+...+
T Consensus       153 ~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~  229 (289)
T cd00200         153 SSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH-ENGVNSVAFSP  229 (289)
T ss_pred             EcCCCcEEEEEccccccceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc-CCceEEEEEcC
Confidence            8889999999998887766664  57778999999999999999999999999999988777665322 22333455556


Q ss_pred             cCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        360 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       360 ~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      ++..+++++.++.+++|+..+. .+...+.+|...|.+++|+|++++|++++.|+.|++|+
T Consensus       230 ~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         230 DGYLLASGSEDGTIRVWDLRTG-ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCcEEEEEcCCCcEEEEEcCCc-eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            7778888888999999999864 44566779999999999999999999999999999996

>KOG0285|consensus

Probab=100.00  E-value=7.1e-35  Score=246.21  Aligned_cols=294  Identities=23%  Similarity=0.293  Sum_probs=239.7

Q ss_pred             cCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeE
Q psy13076         34 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSV  113 (423)
Q Consensus        34 ~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (423)
                      +.|.++-.++.||.+-|.|+++.|..++++||+.|++|+|||+.++.+..                              
T Consensus       138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl------------------------------  187 (460)
T KOG0285|consen  138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL------------------------------  187 (460)
T ss_pred             cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE------------------------------
Confidence            44556667889999999999999999999999999999999999876543                              


Q ss_pred             EEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEE
Q psy13076        114 IIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV  193 (423)
Q Consensus       114 ~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~  193 (423)
                                  ++.||...|..+++|+..-|+.+++.|+.|+-||++..+.+  ..++                     
T Consensus       188 ------------tltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI--R~Yh---------------------  232 (460)
T KOG0285|consen  188 ------------TLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI--RHYH---------------------  232 (460)
T ss_pred             ------------eecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhH--HHhc---------------------
Confidence                        35689999999999999999999999999999999866543  2223                     


Q ss_pred             EcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCC
Q psy13076        194 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS  273 (423)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  273 (423)
                                             +|.+.+.+++.+|... .+++|+.|.++++||.++......+.+|...|.++.+.|-
T Consensus       233 -----------------------GHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~  288 (460)
T KOG0285|consen  233 -----------------------GHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT  288 (460)
T ss_pred             -----------------------cccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence                                   3444566666666655 4889999999999999988888889999999999999999


Q ss_pred             CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEee
Q psy13076        274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ  353 (423)
Q Consensus       274 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~  353 (423)
                      ...+++||.|++|++||+..++...++.  .|+..+.+++.+|....++++|.|. |+-|++..+..+..+. ++.....
T Consensus       289 dpqvit~S~D~tvrlWDl~agkt~~tlt--~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls-gh~~iin  364 (460)
T KOG0285|consen  289 DPQVITGSHDSTVRLWDLRAGKTMITLT--HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS-GHNAIIN  364 (460)
T ss_pred             CCceEEecCCceEEEeeeccCceeEeee--cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc-cccceee
Confidence            9999999999999999999999877774  5899999999999999999999886 8999999887665532 2222233


Q ss_pred             EEEEEecCcEEEEEeCCCcEEEEecCCCCCceE--E--ec---cCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        354 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR--V--IK---GHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       354 ~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~--~--~~---~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      .++. .++..+++|+.+|.+.+||..++..-..  .  ..   .-+..|.+.+|-..+..|+||..|++|++|.-
T Consensus       365 tl~~-nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  365 TLSV-NSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE  438 (460)
T ss_pred             eeee-ccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence            3333 3667889999999999999987432110  0  01   12457999999999999999999999999963

>KOG0640|consensus

Probab=100.00  E-value=2e-35  Score=245.23  Aligned_cols=311  Identities=23%  Similarity=0.386  Sum_probs=231.4

Q ss_pred             eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC
Q psy13076         41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN  120 (423)
Q Consensus        41 ~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  120 (423)
                      ..+..|++++.+.+|+|||.+++|||.|..||+.|++.-     +...... .+ ..+.+.                 ..
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildverm-----laks~~~-em-~~~~~q-----------------a~  161 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERM-----LAKSKPK-EM-ISGDTQ-----------------AR  161 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhh-----hhhcchh-hh-ccCCcc-----------------cC
Confidence            456789999999999999999999999999999998731     1000000 00 000000                 01


Q ss_pred             CcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        121 PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                      ..+++++-.|..+|+.+.|+|...+|++++.|++|+++|..+.......+......+|+++.|+|.|.++++        
T Consensus       162 hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllv--------  233 (430)
T KOG0640|consen  162 HPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV--------  233 (430)
T ss_pred             CceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEE--------
Confidence            134556778999999999999999999999999999999865332111112222345677777776665554        


Q ss_pred             eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee---eccccccCeEEEEECCCCCEE
Q psy13076        201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM---TKQEHSRFVQAVRYSPSGSHF  277 (423)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~---~~~~~~~~i~~l~~s~~g~~l  277 (423)
                                                           |.+..++++||..++++-.   ....|...|+++.+++.|++.
T Consensus       234 -------------------------------------gTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lY  276 (430)
T KOG0640|consen  234 -------------------------------------GTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLY  276 (430)
T ss_pred             -------------------------------------ecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEE
Confidence                                                 3444456666655544322   335678899999999999999


Q ss_pred             EEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCce----eEee
Q psy13076        278 ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ----VEDQ  353 (423)
Q Consensus       278 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~----~~~~  353 (423)
                      ++||.||.|++||.-+++++.++........|.+..|..+|+|+++.+.|.++++|++.++.++.++.....    ....
T Consensus       277 vTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rt  356 (430)
T KOG0640|consen  277 VTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRT  356 (430)
T ss_pred             EEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhh
Confidence            999999999999999999999887643455788999999999999999999999999999999988754311    1111


Q ss_pred             EEEEEecCcEEEEEe-CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        354 QVSCLWQGDYLLTVS-LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       354 ~~~~~~~g~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      .-.+....++++.-. ..+.+--||.++..+...--.||+++++.+..||.+.-++|+|.|-.+|+|-
T Consensus       357 qAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  357 QAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             hhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence            122233567776654 4567888999998765555679999999999999999999999999999994

>KOG0281|consensus

Probab=100.00  E-value=4.3e-36  Score=252.70  Aligned_cols=274  Identities=20%  Similarity=0.353  Sum_probs=226.1

Q ss_pred             eeeEEE-EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc
Q psy13076          8 QQVSCL-WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP   86 (423)
Q Consensus         8 ~~~~~~-~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~   86 (423)
                      --|+|. ||+..+++|++|.+|.+||.+. ..+.+.|.||+++|.|+.|.  .+.++|||+|.+|++||+++++.+.   
T Consensus       198 kgVYClQYDD~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~---  271 (499)
T KOG0281|consen  198 KGVYCLQYDDEKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN---  271 (499)
T ss_pred             CceEEEEecchhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh---
Confidence            357788 7999999999999999999864 66788999999999999985  4599999999999999999876543   


Q ss_pred             CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                                                             ++.+|...|..+.|+.  .+++|++.|.+|.+||+.....+
T Consensus       272 ---------------------------------------tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~i  310 (499)
T KOG0281|consen  272 ---------------------------------------TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDI  310 (499)
T ss_pred             ---------------------------------------HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHH
Confidence                                                   4556888888899974  59999999999999998765321


Q ss_pred             -EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076        167 -LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA  245 (423)
Q Consensus       167 -~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~  245 (423)
                       +...+.++.+.|+.+.|+..  ++++++  .++...+|...++..++.+.+|...|.|+.+..   ..+++||.|++|+
T Consensus       311 t~rrVLvGHrAaVNvVdfd~k--yIVsAS--gDRTikvW~~st~efvRtl~gHkRGIAClQYr~---rlvVSGSSDntIR  383 (499)
T KOG0281|consen  311 TLRRVLVGHRAAVNVVDFDDK--YIVSAS--GDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIR  383 (499)
T ss_pred             HHHHHHhhhhhheeeeccccc--eEEEec--CCceEEEEeccceeeehhhhcccccceehhccC---eEEEecCCCceEE
Confidence             22334556678999998754  655554  445678999999999999999999999988763   2489999999999


Q ss_pred             EEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceec-------ccccccCCCeEEEEECCCC
Q psy13076        246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE-------LGNPAHKGGVYAVAWKPDG  318 (423)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~~~~i~~l~~~~~~  318 (423)
                      +||.....+...+++|++-|.++.|.  .+.+++|++||+|++||+.++.....       .....|.+.|..+.|.  .
T Consensus       384 lwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~  459 (499)
T KOG0281|consen  384 LWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--E  459 (499)
T ss_pred             EEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--c
Confidence            99999888888999999999999995  57899999999999999887654321       1224688999999995  5


Q ss_pred             CeEEEEeCCCcEEEEecCCcc
Q psy13076        319 TQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       319 ~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      ..+++++.|.+|.|||+..+.
T Consensus       460 fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  460 FQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             eEEEeccCCCeEEEEEcCCCC
Confidence            689999999999999987664

>KOG0263|consensus

Probab=100.00  E-value=2.3e-35  Score=272.97  Aligned_cols=271  Identities=24%  Similarity=0.414  Sum_probs=224.1

Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS  211 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      ..+++..|++|+.++|.|-.|..|++|.+...+...-...    ..+..    ++-     .++  +......+.+.+..
T Consensus       379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~----~~l~~----~d~-----~sa--d~~~~~~D~~~~~~  443 (707)
T KOG0263|consen  379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDA----SDLSN----IDT-----ESA--DVDVDMLDDDSSGT  443 (707)
T ss_pred             CcceeEeecCCcchhhccccccEEEEEecchhhhccccch----hhhcc----ccc-----ccc--chhhhhccccCCce
Confidence            5789999999999999999999999999875321100000    00000    000     000  00012233444455


Q ss_pred             eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEEC
Q psy13076        212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDG  291 (423)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~  291 (423)
                      ...+.+|..+|..+.|+|+..+ |++||.|+++++|...++.....+.+|..+|..++|+|-|-|+|++|.|++.++|..
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eEEeecCCCceeeeeecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            5668899999999999999998 899999999999999998888888999999999999999999999999999999998


Q ss_pred             CCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCC
Q psy13076        292 ASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG  371 (423)
Q Consensus       292 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~  371 (423)
                      .....+..+  .+|...+.|++|||+..|+++||.|++||+||+.++..++-|. ++......+.++|.|.+|++|+.++
T Consensus       523 d~~~PlRif--aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed~  599 (707)
T KOG0263|consen  523 DHNKPLRIF--AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDEDG  599 (707)
T ss_pred             ccCCchhhh--cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeecccCC
Confidence            776666555  4799999999999999999999999999999999999988885 4566677788889999999999999


Q ss_pred             cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        372 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       372 ~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      .|++||+..+. ++..+++|++.|.++.||+||..||+||.|+.|++||+.
T Consensus       600 ~I~iWDl~~~~-~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  600 LIKIWDLANGS-LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             cEEEEEcCCCc-chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            99999999864 467889999999999999999999999999999999974

>KOG0282|consensus

Probab=100.00  E-value=2.8e-35  Score=257.80  Aligned_cols=270  Identities=25%  Similarity=0.432  Sum_probs=219.5

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCce
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPI   94 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~   94 (423)
                      .++++++++.|+.|.||++.....++++|.||+.+|..+.|+.+|..++|+|.|+.||+||+++|.++..+..  ...+.
T Consensus       226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~  303 (503)
T KOG0282|consen  226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPT  303 (503)
T ss_pred             eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec--CCCce
Confidence            6999999999999999999988899999999999999999999999999999999999999999999877642  34456


Q ss_pred             EEeeCCCC-CeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeec
Q psy13076         95 VLGGDPKG-KNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH  172 (423)
Q Consensus        95 ~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  172 (423)
                      ++.++|++ +.|++. .+..++.||+.++++++.+..|-+.|..+.|-++|+++++.+.|+++++|+....-.+..... 
T Consensus       304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~-  382 (503)
T KOG0282|consen  304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD-  382 (503)
T ss_pred             eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc-
Confidence            77888888 445443 467899999999999999999999999999999999999999999999999765432211000 


Q ss_pred             CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC-C
Q psy13076        173 PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-P  251 (423)
Q Consensus       173 ~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~-~  251 (423)
                      .                                            ......++..+|++++ +++.+.|+.|.+|... +
T Consensus       383 ~--------------------------------------------~~hsmP~~~~~P~~~~-~~aQs~dN~i~ifs~~~~  417 (503)
T KOG0282|consen  383 P--------------------------------------------EMHTMPCLTLHPNGKW-FAAQSMDNYIAIFSTVPP  417 (503)
T ss_pred             h--------------------------------------------hhccCcceecCCCCCe-ehhhccCceEEEEecccc
Confidence            0                                            0012334445555554 5667778888888643 2


Q ss_pred             cee--eeeccccc--cCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC-CeEEEEeC
Q psy13076        252 FKF--KMTKQEHS--RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG-TQLLTASG  326 (423)
Q Consensus       252 ~~~--~~~~~~~~--~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~  326 (423)
                      +++  ...+++|.  ++-..+.|||||++|++|+.||.+.+||.++.+++..+.  +|.+.+..+.|+|.. ..+|+++.
T Consensus       418 ~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk--ah~~~ci~v~wHP~e~Skvat~~w  495 (503)
T KOG0282|consen  418 FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK--AHDQPCIGVDWHPVEPSKVATCGW  495 (503)
T ss_pred             cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc--cCCcceEEEEecCCCcceeEeccc
Confidence            222  22344554  456788999999999999999999999999999888884  689999999999965 67999999


Q ss_pred             CCcEEEEe
Q psy13076        327 DKTCKLWD  334 (423)
Q Consensus       327 d~~i~iwd  334 (423)
                      ||.|++||
T Consensus       496 ~G~Ikiwd  503 (503)
T KOG0282|consen  496 DGLIKIWD  503 (503)
T ss_pred             CceeEecC
Confidence            99999996

>KOG1539|consensus

Probab=100.00  E-value=7.8e-33  Score=257.00  Aligned_cols=398  Identities=19%  Similarity=0.237  Sum_probs=303.4

Q ss_pred             EEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEee
Q psy13076         19 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG   98 (423)
Q Consensus        19 ~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~   98 (423)
                      ++.|+..|.+.+|++++ ++.+++|+++.+.|+++.=+|--+.++.|..+|+|.++|++..+++.++... .++...+++
T Consensus       175 IvvGs~~G~lql~Nvrt-~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-~g~VtslSF  252 (910)
T KOG1539|consen  175 IVVGSSQGRLQLWNVRT-GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-WGRVTSLSF  252 (910)
T ss_pred             EEEeecCCcEEEEEecc-CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc-ccceeEEEe
Confidence            45589999999999987 6789999999999999999998889999999999999999999999888643 688888999


Q ss_pred             CCCCCeEEEecC--CeEEEEecCCCccccccc-CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce--eEEeeecC
Q psy13076         99 DPKGKNFLYTNG--NSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH--ILKNEFHP  173 (423)
Q Consensus        99 ~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~-~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~  173 (423)
                      ..||..++.+.+  ..+.+||++..+...... .|.+.|..+.|-|....+++++.|..+++|=..+++.  .+-..-.+
T Consensus       253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G  332 (910)
T KOG1539|consen  253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG  332 (910)
T ss_pred             ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC
Confidence            999988877653  469999999998887776 7889999999999999999999999999996554432  22223345


Q ss_pred             CCCCeeEEEEC-CCCCeEEEEEcCCceeeEEEee---------------cCCccee---cccCCCcceeEEEEecCC---
Q psy13076        174 IGGPIKDIAWS-PDNQRMVVVGEGRERFGHVFMS---------------ETGTSVG---EISGQSKPINSCDFKPSR---  231 (423)
Q Consensus       174 ~~~~v~~v~~s-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~---~~~~~~~~i~~~~~~~~~---  231 (423)
                      |..|..++.|. .+|.+++.++.++..  +.+..               ...+...   .......+|...++....   
T Consensus       333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~--r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~  410 (910)
T KOG1539|consen  333 HSAPPSCIRFYGSQGHFILSAKQDRTL--RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE  410 (910)
T ss_pred             CCCCchheeeeccCcEEEEecccCcch--hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence            77888999998 567777666544321  11110               0000110   111122345555544321   


Q ss_pred             -CeeEEEEeCCCeEEEEcCCCcee-eee-----ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc-cc
Q psy13076        232 -PFRIITGSEDNTIAVFEGPPFKF-KMT-----KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-NP  303 (423)
Q Consensus       232 -~~~~~s~s~d~~i~~~~~~~~~~-~~~-----~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~  303 (423)
                       ...++..-.+..++.|+.+.... ...     .+.....+++++.++.|.+.+.|...|.|-+|++++|-....+. .+
T Consensus       411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~  490 (910)
T KOG1539|consen  411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP  490 (910)
T ss_pred             hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence             12344444566788888654332 111     11234568999999999999999999999999999998776663 35


Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCC
Q psy13076        304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPST  383 (423)
Q Consensus       304 ~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~  383 (423)
                      +|.+.|++++.+.-++.+++++.+|.+++||.+.+.++.++..+....  .+......+.++.+..+-.|.++|..+. .
T Consensus       491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~--~iv~hr~s~l~a~~~ddf~I~vvD~~t~-k  567 (910)
T KOG1539|consen  491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT--GIVYHRVSDLLAIALDDFSIRVVDVVTR-K  567 (910)
T ss_pred             cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcc--eeeeeehhhhhhhhcCceeEEEEEchhh-h
Confidence            899999999999999999999999999999999988777765543322  1222234566777888889999999874 4


Q ss_pred             ceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        384 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       384 ~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      .+..+.||++.|++++|||||+||++++.|++||+||+.|
T Consensus       568 vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  568 VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence            4677899999999999999999999999999999999865

>KOG0265|consensus

Probab=100.00  E-value=7.7e-34  Score=234.82  Aligned_cols=276  Identities=22%  Similarity=0.344  Sum_probs=231.5

Q ss_pred             ceeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc
Q psy13076          7 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP   86 (423)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~   86 (423)
                      =|.+.++|||.++|+++.|..|.+|++...-+...+++||.+.|..+.|.+++..|+|+|.|.+|+.||.+++++.+.  
T Consensus        50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk--  127 (338)
T KOG0265|consen   50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK--  127 (338)
T ss_pred             EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh--
Confidence            378889999999999999999999998776777889999999999999999999999999999999999998765432  


Q ss_pred             CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCC-CEEEEEccCCcEEEEEcCCCce
Q psy13076         87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                                                              +++|...|+++.-.--| ..+.|++.|+++|+||+++++.
T Consensus       128 ----------------------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~  167 (338)
T KOG0265|consen  128 ----------------------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA  167 (338)
T ss_pred             ----------------------------------------hccccceeeecCccccCCeEEEecCCCceEEEEeecccch
Confidence                                                    45677788887733333 4667899999999999998776


Q ss_pred             eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076        166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA  245 (423)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~  245 (423)
                      ....+   ..-+++++.|..++..+++++-+++  ..+|+......+..+.+|..+|+.+..+|.+.+ +.+-+.|.+++
T Consensus       168 ~~t~~---~kyqltAv~f~d~s~qv~sggIdn~--ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~-llsnsMd~tvr  241 (338)
T KOG0265|consen  168 IKTFE---NKYQLTAVGFKDTSDQVISGGIDND--IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF-LLSNSMDNTVR  241 (338)
T ss_pred             hhccc---cceeEEEEEecccccceeeccccCc--eeeeccccCcceEEeecccCceeeEEeccCCCc-cccccccceEE
Confidence            54321   1346899999999998888765544  468888888888999999999999999999987 78889999999


Q ss_pred             EEcCCCcee----eeeccccc----cCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076        246 VFEGPPFKF----KMTKQEHS----RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD  317 (423)
Q Consensus       246 ~~~~~~~~~----~~~~~~~~----~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~  317 (423)
                      +||.+++..    ...+++|.    .....++|+|++.++.+|+.|+.+++||..+...+..+  ++|.+.|.+++|+|.
T Consensus       242 vwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl--pGh~gsvn~~~Fhp~  319 (338)
T KOG0265|consen  242 VWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL--PGHYGSVNEVDFHPT  319 (338)
T ss_pred             EEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc--CCcceeEEEeeecCC
Confidence            999876542    33333332    33567899999999999999999999999888887777  579999999999999


Q ss_pred             CCeEEEEeCCCcEEE
Q psy13076        318 GTQLLTASGDKTCKL  332 (423)
Q Consensus       318 ~~~l~s~s~d~~i~i  332 (423)
                      .+.|.+++.|++|.+
T Consensus       320 e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  320 EPIILSCSSDKTIYL  334 (338)
T ss_pred             CcEEEEeccCceeEe
Confidence            999999999999876

>KOG0292|consensus

Probab=100.00  E-value=6.7e-33  Score=258.68  Aligned_cols=365  Identities=20%  Similarity=0.279  Sum_probs=265.5

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      +++||--=|++++.-.|.|++||-+. ..++..|.+|.+||..+.|+|++++++|||.|-+|+||+.++.+|+.++..+.
T Consensus        15 lsFHP~rPwILtslHsG~IQlWDYRM-~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl   93 (1202)
T KOG0292|consen   15 LSFHPKRPWILTSLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL   93 (1202)
T ss_pred             eecCCCCCEEEEeecCceeeeehhhh-hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc
Confidence            67888788999999999999999886 56788999999999999999999999999999999999999999988876543


Q ss_pred             CCCceEEeeCCCCC-eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         90 RGQPIVLGGDPKGK-NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        90 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                      .-... +.|++.-= ++-.+.+++++||++.+.+++.+++||.--|++.+|+|....++|+|-|.+||+||+..-...  
T Consensus        94 DYVRt-~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk--  170 (1202)
T KOG0292|consen   94 DYVRT-VFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKK--  170 (1202)
T ss_pred             ceeEE-eeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhcc--
Confidence            32222 22333222 233356789999999999999999999999999999999999999999999999998532211  


Q ss_pred             eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076        169 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE  248 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~  248 (423)
                       ...  ++...+   .+.+...     ..+.    +-......-..+.+|.+.|+-++|+|..+. +++|++|+.+++|.
T Consensus       171 -~~~--pg~~e~---~~~~~~~-----~~dL----fg~~DaVVK~VLEGHDRGVNwaAfhpTlpl-iVSG~DDRqVKlWr  234 (1202)
T KOG0292|consen  171 -NKA--PGSLED---QMRGQQG-----NSDL----FGQTDAVVKHVLEGHDRGVNWAAFHPTLPL-IVSGADDRQVKLWR  234 (1202)
T ss_pred             -CCC--CCCchh---hhhcccc-----chhh----cCCcCeeeeeeecccccccceEEecCCcce-EEecCCcceeeEEE
Confidence             000  010000   0001110     0000    000001112346789999999999999985 89999999999998


Q ss_pred             CCCce--eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC
Q psy13076        249 GPPFK--FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG  326 (423)
Q Consensus       249 ~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~  326 (423)
                      ....+  -.-+..+|.+.|.++-|+|...++++.|.|+.|+|||+...+.++++..  .++.-+.++-+|..+++++| .
T Consensus       235 mnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr--endRFW~laahP~lNLfAAg-H  311 (1202)
T KOG0292|consen  235 MNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAAG-H  311 (1202)
T ss_pred             eccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec--cCCeEEEEEecCCcceeeee-c
Confidence            65433  1334568999999999999999999999999999999999888888754  45778999999999987765 5


Q ss_pred             CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC-CceEEeccC---CCceeEEEecC
Q psy13076        327 DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGH---NKPITALALSP  402 (423)
Q Consensus       327 d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~h---~~~v~~i~~sp  402 (423)
                      |+-+-+|-++.-....             .+  ++..|...- +.+|+.+|.++.. .++..++.-   -.+..+++++|
T Consensus       312 DsGm~VFkleRErpa~-------------~v--~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNp  375 (1202)
T KOG0292|consen  312 DSGMIVFKLERERPAY-------------AV--NGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNP  375 (1202)
T ss_pred             CCceEEEEEcccCceE-------------EE--cCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeecc
Confidence            6657777765322111             11  333333333 7888899987632 333444433   36899999999


Q ss_pred             CCCeE-EEecCC
Q psy13076        403 DRGTV-FTGSHD  413 (423)
Q Consensus       403 ~~~~l-~s~s~D  413 (423)
                      ..+-+ ++...|
T Consensus       376 ae~~vlics~~~  387 (1202)
T KOG0292|consen  376 AENAVLICSNLD  387 (1202)
T ss_pred             ccCeEEEEeccC
Confidence            87764 443333

>KOG0293|consensus

Probab=100.00  E-value=6.8e-34  Score=244.41  Aligned_cols=280  Identities=20%  Similarity=0.337  Sum_probs=220.6

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccC--CCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNN--PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP   86 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~--~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~   86 (423)
                      .+.++.+|+|||+||.|.+.-+|++..  ..+..+++.||..+|.-+.||||+++|++|+.|..+++||+.++.+....+
T Consensus       229 fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~  308 (519)
T KOG0293|consen  229 FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP  308 (519)
T ss_pred             EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc
Confidence            456667999999999999999998753  344577899999999999999999999999999999999999987655432


Q ss_pred             CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                      .                                         +|...+.+.+|-|||..+++|+.|+++..||..... .
T Consensus       309 ~-----------------------------------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~  346 (519)
T KOG0293|consen  309 S-----------------------------------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-L  346 (519)
T ss_pred             c-----------------------------------------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-h
Confidence            1                                         244578899999999999999999999999986433 1


Q ss_pred             EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076        167 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV  246 (423)
Q Consensus       167 ~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~  246 (423)
                      ...+.. ....|.+++..+||+++++++.+..  .+++..+...... +.....+|++..++.++.+ +++.-.+..+.+
T Consensus       347 ~~W~gv-r~~~v~dlait~Dgk~vl~v~~d~~--i~l~~~e~~~dr~-lise~~~its~~iS~d~k~-~LvnL~~qei~L  421 (519)
T KOG0293|consen  347 GNWEGV-RDPKVHDLAITYDGKYVLLVTVDKK--IRLYNREARVDRG-LISEEQPITSFSISKDGKL-ALVNLQDQEIHL  421 (519)
T ss_pred             hccccc-ccceeEEEEEcCCCcEEEEEecccc--eeeechhhhhhhc-cccccCceeEEEEcCCCcE-EEEEcccCeeEE
Confidence            111111 1135889999999999999885543  2344444333332 3445568999999999987 556678899999


Q ss_pred             EcCCCceeeeecccccc--CeEEEEECC-CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC-CeEE
Q psy13076        247 FEGPPFKFKMTKQEHSR--FVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG-TQLL  322 (423)
Q Consensus       247 ~~~~~~~~~~~~~~~~~--~i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~  322 (423)
                      ||....++...+.+|..  ++-.-+|-- +..++++||.|++|+||+..+++++.++.  +|...|.+++|+|.. ..||
T Consensus       422 WDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls--GHs~~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  422 WDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS--GHSKTVNCVSWNPADPEMFA  499 (519)
T ss_pred             eecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec--CCcceeeEEecCCCCHHHhh
Confidence            99887777777777753  333334543 44799999999999999999999999985  799999999999954 6899


Q ss_pred             EEeCCCcEEEEecCC
Q psy13076        323 TASGDKTCKLWDIET  337 (423)
Q Consensus       323 s~s~d~~i~iwd~~~  337 (423)
                      +||+||+||||-...
T Consensus       500 SasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  500 SASDDGTIRIWGPSD  514 (519)
T ss_pred             ccCCCCeEEEecCCc
Confidence            999999999998753

>KOG0296|consensus

Probab=100.00  E-value=6.2e-33  Score=235.15  Aligned_cols=292  Identities=18%  Similarity=0.274  Sum_probs=233.8

Q ss_pred             ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         39 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        39 ~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      ...+|..|.++|.+++.+|+.++++|||.|....+|+..++...                                    
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~------------------------------------   99 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA------------------------------------   99 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce------------------------------------
Confidence            46689999999999999999999999999999999998876422                                    


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                            ..+.+|+..|+++.|+.+|.+||||+.+|.|+||+..++.......  .....+.-+.                
T Consensus       100 ------~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~--~e~~dieWl~----------------  155 (399)
T KOG0296|consen  100 ------GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD--QEVEDIEWLK----------------  155 (399)
T ss_pred             ------eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee--cccCceEEEE----------------
Confidence                  2467899999999999999999999999999999998876544322  1112233333                


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEE
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFA  278 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~  278 (423)
                                                  |+|... .+++|+.||.+.+|..+.......+.+|..++++=.|.|+|+.++
T Consensus       156 ----------------------------WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  156 ----------------------------WHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             ----------------------------eccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence                                        444333 377899999999999887777778889999999999999999999


Q ss_pred             EEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCc-------eeE
Q psy13076        279 SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN-------QVE  351 (423)
Q Consensus       279 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~-------~~~  351 (423)
                      ++..||+|++|+.+++..+.++.... .....++.++.++..+++|+.++.+++-+..+++.+.......       ...
T Consensus       207 tgy~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~  285 (399)
T KOG0296|consen  207 TGYDDGTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL  285 (399)
T ss_pred             EEecCceEEEEecCCCceeEEecccc-cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence            99999999999999999888776433 3456789999999999999999999999999998877654211       111


Q ss_pred             eeEEEEEecC---cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        352 DQQVSCLWQG---DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       352 ~~~~~~~~~g---~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      ..++...+..   ...++|+.+|.|.+||+....  ++...-|..+|+.+.|-+ ..+|++++.||.|+.||..|
T Consensus       286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt  357 (399)
T KOG0296|consen  286 DESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDART  357 (399)
T ss_pred             hhhhhhcccccccchhhcccccceEEEEecccch--hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccc
Confidence            1112222221   234678999999999998743  345567999999999998 78999999999999999875

>KOG0266|consensus

Probab=100.00  E-value=9.4e-33  Score=261.50  Aligned_cols=281  Identities=26%  Similarity=0.442  Sum_probs=234.2

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCC-CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP   86 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~   86 (423)
                      .++.+++||+++++++.|+.|++|+..... .....+.+|...|..++|+|+++++++|+.|++||+||++..       
T Consensus       163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-------  235 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-------  235 (456)
T ss_pred             EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC-------
Confidence            345667899999999999999999985433 256677899999999999999999999999999999999321       


Q ss_pred             CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                                                        +...+++.+|...|++++|+|+++++++|+.|++||+||+++.++.
T Consensus       236 ----------------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~  281 (456)
T KOG0266|consen  236 ----------------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV  281 (456)
T ss_pred             ----------------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE
Confidence                                              1223456789999999999999999999999999999999986655


Q ss_pred             EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc--ceecccCCCc--ceeEEEEecCCCeeEEEEeCCC
Q psy13076        167 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT--SVGEISGQSK--PINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       167 ~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                        ..+..+.++|.+++|++++..+++++.  +...++|+..++.  ....+..+..  ++.++.|+|++.+ +++++.|+
T Consensus       282 --~~l~~hs~~is~~~f~~d~~~l~s~s~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d~  356 (456)
T KOG0266|consen  282 --RKLKGHSDGISGLAFSPDGNLLVSASY--DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-LLSASLDR  356 (456)
T ss_pred             --EeeeccCCceEEEEECCCCCEEEEcCC--CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-EEEecCCC
Confidence              345566789999999999999888743  5667889988888  4556665544  5999999999987 88899999


Q ss_pred             eEEEEcCCCceeeeeccccccC---eEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccccc-CCCeEEEEECCCC
Q psy13076        243 TIAVFEGPPFKFKMTKQEHSRF---VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH-KGGVYAVAWKPDG  318 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~---i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~i~~l~~~~~~  318 (423)
                      .+++|+............|...   +.+...++.|+++++|+.|+.|.+||..++..+..+.  +| ...+..++++|..
T Consensus       357 ~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~--~h~~~~~~~~~~~~~~  434 (456)
T KOG0266|consen  357 TLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE--GHSKAAVSDLSSHPTE  434 (456)
T ss_pred             eEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc--CCCCCceeccccCCCc
Confidence            9999998877777777777654   3344557889999999999999999999988777764  57 7888999999999


Q ss_pred             CeEEEEe--CCCcEEEEecC
Q psy13076        319 TQLLTAS--GDKTCKLWDIE  336 (423)
Q Consensus       319 ~~l~s~s--~d~~i~iwd~~  336 (423)
                      +++++++  .|+.+++|...
T Consensus       435 ~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  435 NLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CeeeecCcCCCceEEEecCC
Confidence            9999998  78999999753

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6e-32  Score=274.56  Aligned_cols=314  Identities=15%  Similarity=0.151  Sum_probs=227.2

Q ss_pred             cceEEEEeccCCCCc----eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc----e----eecccCCCCCC
Q psy13076         25 SGFISYLDVNNPSTP----IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY----I----FATLPRTQRGQ   92 (423)
Q Consensus        25 dg~i~~~d~~~~~~~----~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~----~----~~~~~~~~~~~   92 (423)
                      +|..++|+...-...    ...+.+|.+.|.+++|+|++++|+||+.|++|++||.++..    .    ...+.  ....
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~  534 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSK  534 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCc
Confidence            567777776431111    11245699999999999999999999999999999976421    0    00111  1122


Q ss_pred             ceEEeeCCC-CCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEe
Q psy13076         93 PIVLGGDPK-GKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKN  169 (423)
Q Consensus        93 ~~~~~~~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~  169 (423)
                      ...+.+++. +..++.+ .+..+++|+++++.....+.+|...|++++|+| ++.+|+||+.|++|++||+.+.......
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            334555553 4555544 477999999999988889999999999999997 7899999999999999999765433211


Q ss_pred             eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC
Q psy13076        170 EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG  249 (423)
Q Consensus       170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~  249 (423)
                      ..   ...                                            +.++.|++.....+++|+.|+.|++||.
T Consensus       615 ~~---~~~--------------------------------------------v~~v~~~~~~g~~latgs~dg~I~iwD~  647 (793)
T PLN00181        615 KT---KAN--------------------------------------------ICCVQFPSESGRSLAFGSADHKVYYYDL  647 (793)
T ss_pred             ec---CCC--------------------------------------------eEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            10   122                                            3344443333335888999999999998


Q ss_pred             CCce-eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCc------cceecccccccCCCeEEEEECCCCCeEE
Q psy13076        250 PPFK-FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA------DLVSELGNPAHKGGVYAVAWKPDGTQLL  322 (423)
Q Consensus       250 ~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~i~~l~~~~~~~~l~  322 (423)
                      +..+ .......|...|.+++|. ++.++++++.|+.|++||+..+      ..+..+  .+|...+..++|+|++++|+
T Consensus       648 ~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~--~gh~~~i~~v~~s~~~~~la  724 (793)
T PLN00181        648 RNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF--MGHTNVKNFVGLSVSDGYIA  724 (793)
T ss_pred             CCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE--cCCCCCeeEEEEcCCCCEEE
Confidence            6543 334566888999999997 7889999999999999998743      334444  36888899999999999999


Q ss_pred             EEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecC
Q psy13076        323 TASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP  402 (423)
Q Consensus       323 s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp  402 (423)
                      +|+.|++|++|+......+..+.....                              . ...-.....|...|++++|+|
T Consensus       725 sgs~D~~v~iw~~~~~~~~~s~~~~~~------------------------------~-~~~~~~~~~~~~~V~~v~ws~  773 (793)
T PLN00181        725 TGSETNEVFVYHKAFPMPVLSYKFKTI------------------------------D-PVSGLEVDDASQFISSVCWRG  773 (793)
T ss_pred             EEeCCCEEEEEECCCCCceEEEecccC------------------------------C-cccccccCCCCcEEEEEEEcC
Confidence            999999999999876543322211000                              0 000011345677899999999


Q ss_pred             CCCeEEEecCCCcEEEeeC
Q psy13076        403 DRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       403 ~~~~l~s~s~D~~i~~W~~  421 (423)
                      ++.+|++|+.||.|++|++
T Consensus       774 ~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        774 QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCeEEEecCCCcEEEEec
Confidence            9999999999999999986

>KOG0645|consensus

Probab=100.00  E-value=1.6e-31  Score=218.15  Aligned_cols=277  Identities=21%  Similarity=0.339  Sum_probs=216.6

Q ss_pred             eEEEEe-CCEEEEEeccceEEEEeccCCC--Cceeec-ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076         10 VSCLWQ-GDYLLTVSLSGFISYLDVNNPS--TPIRVI-KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus        10 ~~~~~~-~~~~~~~~~dg~i~~~d~~~~~--~~~~~~-~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      +|.+|- |..||+|+.|..||+|+...+.  .+..++ .+|++.|.+++|+|.|++|++||.|.++-||.-..+.     
T Consensus        20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e-----   94 (312)
T KOG0645|consen   20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE-----   94 (312)
T ss_pred             EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc-----
Confidence            556663 6699999999999999986311  123333 4799999999999999999999999999999654321     


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC-c
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK-E  164 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~-~  164 (423)
                                                         -++..++.||.++|.+++|+++|.|||+++.|+.|-||.+... +
T Consensus        95 -----------------------------------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE  139 (312)
T KOG0645|consen   95 -----------------------------------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE  139 (312)
T ss_pred             -----------------------------------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence                                               1234567899999999999999999999999999999998744 3


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec---CCcceecccCCCcceeEEEEecCCCeeEEEEeCC
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE---TGTSVGEISGQSKPINSCDFKPSRPFRIITGSED  241 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d  241 (423)
                      ......+..+..-|.-+.|+|....|++++.++.  ..+|..+   .-.+...+.+|...+.+++|+|.+. ++++++.|
T Consensus       140 fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnT--Ik~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD  216 (312)
T KOG0645|consen  140 FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNT--IKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDD  216 (312)
T ss_pred             EEEEeeeccccccccEEEEcCCcceeEEeccCCe--EEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCC
Confidence            3444556667788999999999888888776553  3455444   2346778889999999999999885 59999999


Q ss_pred             CeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc------ceecccccccCCCeEEEEEC
Q psy13076        242 NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD------LVSELGNPAHKGGVYAVAWK  315 (423)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~i~~l~~~  315 (423)
                      +++++|....    .....|...+..++|.  ...|++++.|+.|++|.-....      ++.. ...+|...|.+++|.
T Consensus       217 ~tv~Iw~~~~----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~  289 (312)
T KOG0645|consen  217 GTVSIWRLYT----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWN  289 (312)
T ss_pred             cceEeeeecc----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEc
Confidence            9999996321    1123466778889998  4589999999999999765421      1111 224788899999999


Q ss_pred             CC-CCeEEEEeCCCcEEEEecC
Q psy13076        316 PD-GTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       316 ~~-~~~l~s~s~d~~i~iwd~~  336 (423)
                      |. .++|++++.||+|++|.+.
T Consensus       290 p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  290 PKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCCCceeecCCCceEEEEEec
Confidence            95 6899999999999999864

>KOG0316|consensus

Probab=100.00  E-value=8.3e-32  Score=215.49  Aligned_cols=284  Identities=17%  Similarity=0.286  Sum_probs=219.3

Q ss_pred             CCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec-CCeE
Q psy13076         35 NPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSV  113 (423)
Q Consensus        35 ~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  113 (423)
                      .|++....+.+|.++|..+.|+.+|.+.+++++|.+||+||...+.++++...+- .+.+=+....+...+..+. +..+
T Consensus         5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG-~EVlD~~~s~Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen    5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG-HEVLDAALSSDNSKFASCGGDKAV   83 (307)
T ss_pred             CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCC-ceeeeccccccccccccCCCCceE
Confidence            4566777889999999999999999999999999999999999998888765431 1222234444554555443 5689


Q ss_pred             EEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEE
Q psy13076        114 IIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV  193 (423)
Q Consensus       114 ~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~  193 (423)
                      .+||.++++..+.|.+|...|+.++|+.+...+++|+.|.++|+||-++.....          |.-++-..|       
T Consensus        84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP----------iQildea~D-------  146 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP----------IQILDEAKD-------  146 (307)
T ss_pred             EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc----------cchhhhhcC-------
Confidence            999999999999999999999999999999999999999999999987654322          211111111       


Q ss_pred             EcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCC
Q psy13076        194 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS  273 (423)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  273 (423)
                                                 .|.++..+.   ..+++||.||+++.||.+.......  ....+|+++.|+++
T Consensus       147 ---------------------------~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d  194 (307)
T KOG0316|consen  147 ---------------------------GVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKD  194 (307)
T ss_pred             ---------------------------ceeEEEecc---cEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCC
Confidence                                       222232221   2488999999999999876655433  33457999999999


Q ss_pred             CCEEEEEEecCeEEEEECCCccceecccccccCCC--eEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeE
Q psy13076        274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGG--VYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVE  351 (423)
Q Consensus       274 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~  351 (423)
                      |+..+.++-|+.+++.|..+|+++....  +|...  =...++......+++||.||.|.+||+.....+..+.......
T Consensus       195 ~nc~La~~l~stlrLlDk~tGklL~sYk--Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~  272 (307)
T KOG0316|consen  195 GNCSLASSLDSTLRLLDKETGKLLKSYK--GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVI  272 (307)
T ss_pred             CCEEEEeeccceeeecccchhHHHHHhc--ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCcee
Confidence            9999999999999999999999988774  45432  3455677778899999999999999999999988887777777


Q ss_pred             eeEEEEEecCcEEEEEeCC
Q psy13076        352 DQQVSCLWQGDYLLTVSLS  370 (423)
Q Consensus       352 ~~~~~~~~~g~~l~~~~~~  370 (423)
                      ...+++.|.-+.++++...
T Consensus       273 v~dl~~hp~~~~f~~A~~~  291 (307)
T KOG0316|consen  273 VTDLSCHPTMDDFITATGH  291 (307)
T ss_pred             EEeeecccCccceeEecCC
Confidence            7778888766666655443

>KOG0275|consensus

Probab=100.00  E-value=2.2e-33  Score=234.50  Aligned_cols=279  Identities=21%  Similarity=0.295  Sum_probs=223.4

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCcee--------ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR--------VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY   80 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~--------~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~   80 (423)
                      |-.++|||.||+++|-||.|.+|+--+ ++..+        .|.-|.++|.|+.|++|..+|+||+.||.|++|.+++|.
T Consensus       218 cA~FSPDgqyLvsgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~  296 (508)
T KOG0275|consen  218 CARFSPDGQYLVSGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ  296 (508)
T ss_pred             heeeCCCCceEeeccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence            345678999999999999999999754 33322        244688999999999999999999999999999999999


Q ss_pred             eeecccCCCCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEE
Q psy13076         81 IFATLPRTQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD  159 (423)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd  159 (423)
                      |++.+.+.+..-.+++.++.++..++.. .+..+++..++++++.+.+.||++-|+.+.|++||.++++++.||+|++|+
T Consensus       297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~  376 (508)
T KOG0275|consen  297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWH  376 (508)
T ss_pred             HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEec
Confidence            9999987777777888999988766654 578999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe
Q psy13076        160 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS  239 (423)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s  239 (423)
                      .++.+++......+...+                                            |+++-.-|.++..++.|.
T Consensus       377 ~KtteC~~Tfk~~~~d~~--------------------------------------------vnsv~~~PKnpeh~iVCN  412 (508)
T KOG0275|consen  377 GKTTECLSTFKPLGTDYP--------------------------------------------VNSVILLPKNPEHFIVCN  412 (508)
T ss_pred             CcchhhhhhccCCCCccc--------------------------------------------ceeEEEcCCCCceEEEEc
Confidence            988876543322222223                                            333444444455567777


Q ss_pred             CCCeEEEEcCCCceeeeec--cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076        240 EDNTIAVFEGPPFKFKMTK--QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD  317 (423)
Q Consensus       240 ~d~~i~~~~~~~~~~~~~~--~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~  317 (423)
                      ..+++++.+........-.  ....+..-+++.+|.|..+.+.+.|+.++.|...+|++..++.  .|...+.+++-+|.
T Consensus       413 rsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~--VhEkdvIGl~HHPH  490 (508)
T KOG0275|consen  413 RSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP--VHEKDVIGLTHHPH  490 (508)
T ss_pred             CCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee--cccccccccccCcc
Confidence            7777777765433222111  1112234456799999999999999999999999999887774  58888899999999


Q ss_pred             CCeEEEEeCCCcEEEEe
Q psy13076        318 GTQLLTASGDKTCKLWD  334 (423)
Q Consensus       318 ~~~l~s~s~d~~i~iwd  334 (423)
                      .+.|++-+.||.+++|.
T Consensus       491 qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  491 QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cchhhhhcccchhhhcC
Confidence            99999999999999994

>KOG1408|consensus

Probab=100.00  E-value=2.4e-31  Score=243.18  Aligned_cols=310  Identities=19%  Similarity=0.269  Sum_probs=233.1

Q ss_pred             CCeEEEEecCCCcc---cccccCCcceEEEEEECC-C----------CCEEEEEccCCcEEEEEcCCCce--e-----EE
Q psy13076        110 GNSVIIRNIENPAI---SDIYTEHSCAVNVAKYSP-S----------GFYIASGDISGKVRIWDTVNKEH--I-----LK  168 (423)
Q Consensus       110 ~~~~~i~~~~~~~~---~~~~~~h~~~i~~~~~sp-~----------~~~l~s~~~d~~i~vwd~~~~~~--~-----~~  168 (423)
                      +-.+.+||+.+..-   ...+-.|...|+.+.--| +          ..-+.|++.|++||+|+++....  .     +.
T Consensus       345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils  424 (1080)
T KOG1408|consen  345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS  424 (1080)
T ss_pred             CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence            34566777764321   123446888888887655 1          24689999999999999875211  1     00


Q ss_pred             ee---------------------e-------cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCc
Q psy13076        169 NE---------------------F-------HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK  220 (423)
Q Consensus       169 ~~---------------------~-------~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (423)
                      ..                     +       ......+++++.+|+|++|+..  ++....+++..+.-..+..+..|..
T Consensus       425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsG--Dr~GnlrVy~Lq~l~~~~~~eAHes  502 (1080)
T KOG1408|consen  425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASG--DRGGNLRVYDLQELEYTCFMEAHES  502 (1080)
T ss_pred             hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceeccc--CccCceEEEEehhhhhhhheecccc
Confidence            00                     0       0011248899999999998863  3334456777776667778889999


Q ss_pred             ceeEEEEecC--CCeeEEEEeCCCeEEEEcC-CCceeeeeccccccCeEEEEECCCC--CEEEEEEecCeEEEEECCC--
Q psy13076        221 PINSCDFKPS--RPFRIITGSEDNTIAVFEG-PPFKFKMTKQEHSRFVQAVRYSPSG--SHFASAGFDGKVFLYDGAS--  293 (423)
Q Consensus       221 ~i~~~~~~~~--~~~~~~s~s~d~~i~~~~~-~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~s~s~dg~i~vwd~~~--  293 (423)
                      .|.|+.|+-.  ..-++++++.|+.|.+||. +.+.+..++.+|...|+++.|...|  ...++++.|+.|..--...  
T Consensus       503 EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~  582 (1080)
T KOG1408|consen  503 EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS  582 (1080)
T ss_pred             eeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc
Confidence            9999999853  2346899999999999996 4566777889999999999998887  5678888998776543321  


Q ss_pred             -ccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEe--eEEEEEecCcEEEEEeCC
Q psy13076        294 -ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVED--QQVSCLWQGDYLLTVSLS  370 (423)
Q Consensus       294 -~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~  370 (423)
                       +.....-........+.+|+..|+-+++++++.|+.|||||+++++..+.|........  ..+...|.|-|+++...|
T Consensus       583 ~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd  662 (1080)
T KOG1408|consen  583 SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD  662 (1080)
T ss_pred             CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence             22222111122345689999999999999999999999999999999999976654333  345556889999999999


Q ss_pred             CcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        371 GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       371 ~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      .++-++|.-.++. +..+.||...|+.+.|++|.+.|++++.||.|-+|.+.
T Consensus       663 ktl~~~Df~sgEc-vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  663 KTLCFVDFVSGEC-VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             CceEEEEeccchh-hhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            9999999988654 67889999999999999999999999999999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.2e-31  Score=235.69  Aligned_cols=276  Identities=27%  Similarity=0.439  Sum_probs=228.1

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      +++++++++++++++.||.|++|++.. .++...+.+|..++..+.|+|+++++++++.|+.|++||.++++..      
T Consensus        14 ~~~~~~~~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~------   86 (289)
T cd00200          14 CVAFSPDGKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV------   86 (289)
T ss_pred             EEEEcCCCCEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce------
Confidence            344456889999999999999999975 4466788899999999999999999999999999999999764221      


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                                                          ..+..|...|.++.|+|+++++++++.|+.+++||+.+.+....
T Consensus        87 ------------------------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  130 (289)
T cd00200          87 ------------------------------------RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT  130 (289)
T ss_pred             ------------------------------------EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEE
Confidence                                                12335777899999999999999999899999999986554433


Q ss_pred             eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076        169 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE  248 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~  248 (423)
                        +..+...+.+++|+|++..+++...+  ....+|+...+..+..+..+...+.++.|+|++.. +++++.++.+.+|+
T Consensus       131 --~~~~~~~i~~~~~~~~~~~l~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~~~~i~i~d  205 (289)
T cd00200         131 --LRGHTDWVNSVAFSPDGTFVASSSQD--GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK-LLSSSSDGTIKLWD  205 (289)
T ss_pred             --eccCCCcEEEEEEcCcCCEEEEEcCC--CcEEEEEccccccceeEecCccccceEEECCCcCE-EEEecCCCcEEEEE
Confidence              33456789999999998776665422  33567777767777777788889999999999865 66677799999999


Q ss_pred             CCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCC
Q psy13076        249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       249 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                      ....+.......+...+.+++|+|++.++++++.||.|++|+..+++....+.  .|...+.+++|+|++++|++++.|+
T Consensus       206 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         206 LSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKRLASGSADG  283 (289)
T ss_pred             CCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--ccCCcEEEEEECCCCCEEEEecCCC
Confidence            87766666666788899999999998899988889999999999887777664  5788899999999999999999999


Q ss_pred             cEEEEe
Q psy13076        329 TCKLWD  334 (423)
Q Consensus       329 ~i~iwd  334 (423)
                      .+++|+
T Consensus       284 ~i~iw~  289 (289)
T cd00200         284 TIRIWD  289 (289)
T ss_pred             eEEecC
Confidence            999996

>KOG0278|consensus

Probab=100.00  E-value=3.7e-33  Score=225.11  Aligned_cols=287  Identities=23%  Similarity=0.297  Sum_probs=229.7

Q ss_pred             eeecccccCceeEEEEeC---CCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076         40 IRVIKGHNKPITALALSP---DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR  116 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~---~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  116 (423)
                      ..+..||..||..|+|+|   +|-+|+|++.|+.=-+=                                          
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr------------------------------------------   44 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLR------------------------------------------   44 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhc------------------------------------------
Confidence            347899999999999987   67789999998742111                                          


Q ss_pred             ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076        117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                      +-+++..+.+|.||++.|++.....+-...|+++.|-+-++||.-++..+...+   +..-|.+++|+.|..        
T Consensus        45 ~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~---hkhivk~~af~~ds~--------  113 (334)
T KOG0278|consen   45 NGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE---HKHIVKAVAFSQDSN--------  113 (334)
T ss_pred             cCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh---hhheeeeEEecccch--------
Confidence            123566677899999999999999998899999999999999987766543211   223345555555433        


Q ss_pred             CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc-eeeeeccccccCeEEEEECCCCC
Q psy13076        197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-KFKMTKQEHSRFVQAVRYSPSGS  275 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~g~  275 (423)
                                                          + +++|+.++.+++|+.+.. .......+|...|..+-|....+
T Consensus       114 ------------------------------------~-lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~  156 (334)
T KOG0278|consen  114 ------------------------------------Y-LLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK  156 (334)
T ss_pred             ------------------------------------h-hhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc
Confidence                                                2 667788888888886433 23445678899999999999889


Q ss_pred             EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEE
Q psy13076        276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQV  355 (423)
Q Consensus       276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~  355 (423)
                      .+++.+.|+.|++||.+++..++.+..   +..|+++-.+++|++|.++ .-+.|++||..+...++.+.+..++.  +-
T Consensus       157 ~iLSSadd~tVRLWD~rTgt~v~sL~~---~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~--SA  230 (334)
T KOG0278|consen  157 CILSSADDKTVRLWDHRTGTEVQSLEF---NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVE--SA  230 (334)
T ss_pred             eEEeeccCCceEEEEeccCcEEEEEec---CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccc--cc
Confidence            999999999999999999999888854   5678999999999987665 45679999999999999887655444  44


Q ss_pred             EEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        356 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       356 ~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      +..|+..++++|..|..++.||..+++..-.-.+||.++|.|+.|+|||...++||.||+||+|...
T Consensus       231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            5667889999999999999999998765333248999999999999999999999999999999864

>KOG0275|consensus

Probab=100.00  E-value=6.1e-33  Score=231.85  Aligned_cols=295  Identities=21%  Similarity=0.347  Sum_probs=239.5

Q ss_pred             cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccc
Q psy13076         45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS  124 (423)
Q Consensus        45 gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  124 (423)
                      |.++-+.|..|+||+++|+||+-||-|.+||..+|++.+.+..+..                                  
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq----------------------------------  256 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ----------------------------------  256 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh----------------------------------
Confidence            5567789999999999999999999999999999988766643321                                  


Q ss_pred             ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       125 ~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      +.|.-+..+|.++.|+.|...+|+|+.||.|++|.++++.++...+. .+...|+++.|+.|+..               
T Consensus       257 d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr-AHtkGvt~l~FSrD~Sq---------------  320 (508)
T KOG0275|consen  257 DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR-AHTKGVTCLSFSRDNSQ---------------  320 (508)
T ss_pred             cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh-hhccCeeEEEEccCcch---------------
Confidence            12344677899999999999999999999999999999887643321 23445666666666543               


Q ss_pred             eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC
Q psy13076        205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG  284 (423)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg  284 (423)
                                                    +++++.|.++++...+..++...+.+|..+|+.+.|++||.++++++.||
T Consensus       321 ------------------------------iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg  370 (508)
T KOG0275|consen  321 ------------------------------ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG  370 (508)
T ss_pred             ------------------------------hhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence                                          55677788888888777788888899999999999999999999999999


Q ss_pred             eEEEEECCCccceecccccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecCCcceeeeeeeCceeE--eeEEEEEecC
Q psy13076        285 KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSAVSEFLMGNQVE--DQQVSCLWQG  361 (423)
Q Consensus       285 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~--~~~~~~~~~g  361 (423)
                      +|++|+.++.+++.++...+....|.++-.-|.+ ..++.+-..+++.|-+++ ++.+++|.-++...  ......+|.|
T Consensus       371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG  449 (508)
T KOG0275|consen  371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG  449 (508)
T ss_pred             cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence            9999999999998888655555678888777744 688888889999999985 45677775443322  2234456899


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       362 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      +++.+...|+.++-+....+... +.+.-|++.|-.++.+|..+.|+|-+.||.+++|.+
T Consensus       450 ewiYcigED~vlYCF~~~sG~LE-~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp  508 (508)
T KOG0275|consen  450 EWIYCIGEDGVLYCFSVLSGKLE-RTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP  508 (508)
T ss_pred             cEEEEEccCcEEEEEEeecCcee-eeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence            99999999999999998886553 577889999999999999999999999999999963

>KOG0281|consensus

Probab=100.00  E-value=3.1e-33  Score=235.56  Aligned_cols=269  Identities=22%  Similarity=0.359  Sum_probs=211.9

Q ss_pred             cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc
Q psy13076         47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI  126 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  126 (423)
                      .+.|-|+++  |++.++||..|++|++||.++..+                                          ...
T Consensus       197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c------------------------------------------~~~  232 (499)
T KOG0281|consen  197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLEC------------------------------------------LKI  232 (499)
T ss_pred             CCceEEEEe--cchhhhcccccCceEEeccccHHH------------------------------------------HHh
Confidence            467888887  456799999999999999876433                                          345


Q ss_pred             ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEee
Q psy13076        127 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS  206 (423)
Q Consensus       127 ~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~  206 (423)
                      +.||++.|.+++|.  .+.+++|+.|.+|++||+++++++..  +.                                  
T Consensus       233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t--li----------------------------------  274 (499)
T KOG0281|consen  233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT--LI----------------------------------  274 (499)
T ss_pred             hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH--Hh----------------------------------
Confidence            67999999999985  56999999999999999998876532  11                                  


Q ss_pred             cCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc---eeeeeccccccCeEEEEECCCCCEEEEEEec
Q psy13076        207 ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPSGSHFASAGFD  283 (423)
Q Consensus       207 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d  283 (423)
                                .|...+..+.|+..   .++++|.|.++.+|+....   .+...+.+|...|+.+.|+.  +|++++|.|
T Consensus       275 ----------hHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgD  339 (499)
T KOG0281|consen  275 ----------HHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGD  339 (499)
T ss_pred             ----------hhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCC
Confidence                      12222333333322   4889999999999986432   33445678999999999965  599999999


Q ss_pred             CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcE
Q psy13076        284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY  363 (423)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~  363 (423)
                      .+|++|+..+++.+.++  .+|..+|-|+.+  .++++++||.|.+||+||+..|.+++-+..+..   ..-...++.+.
T Consensus       340 RTikvW~~st~efvRtl--~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe---LvRciRFd~kr  412 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTL--NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRCIRFDNKR  412 (499)
T ss_pred             ceEEEEeccceeeehhh--hcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH---hhhheeecCce
Confidence            99999999999998887  479999988876  689999999999999999999998776543221   11223468999


Q ss_pred             EEEEeCCCcEEEEecCCCCCc--------eEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        364 LLTVSLSGFISYLDVNNPSTP--------IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       364 l~~~~~~~~i~~~~~~~~~~~--------~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      +++|..||.|++||++.+..|        +..+..|++.|..+.|-  ...|++.+.|.+|-+||.
T Consensus       413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDF  476 (499)
T ss_pred             eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence            999999999999999876554        22345799999999884  678999999999999996

>KOG0285|consensus

Probab=100.00  E-value=1.1e-31  Score=227.04  Aligned_cols=278  Identities=17%  Similarity=0.325  Sum_probs=239.0

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      +|++.|-+.|++++|.|+.|.+||+.+ .++..++.||...|..+++|+--++|++++.|+.|+-||++..++       
T Consensus       156 ~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv-------  227 (460)
T KOG0285|consen  156 SVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV-------  227 (460)
T ss_pred             EEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh-------
Confidence            678888899999999999999999987 566779999999999999999999999999999999999976433       


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                                                         ++.|-||-+.|.++..+|.-..++||+.|.++|+||++++..+  
T Consensus       228 -----------------------------------IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V--  270 (460)
T KOG0285|consen  228 -----------------------------------IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV--  270 (460)
T ss_pred             -----------------------------------HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceE--
Confidence                                               3456789999999999999999999999999999999987765  


Q ss_pred             eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076        169 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE  248 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~  248 (423)
                      ..+.++..+|.++.+.|-...+++++.+  ...++|+..-++.+..+..|...+.+++.+|... .+++++.| .|+-|+
T Consensus       271 ~~l~GH~~~V~~V~~~~~dpqvit~S~D--~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~-~fASas~d-nik~w~  346 (460)
T KOG0285|consen  271 HVLSGHTNPVASVMCQPTDPQVITGSHD--STVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN-LFASASPD-NIKQWK  346 (460)
T ss_pred             EEecCCCCcceeEEeecCCCceEEecCC--ceEEEeeeccCceeEeeecccceeeEEecCCchh-hhhccCCc-cceecc
Confidence            3456678999999999988888877654  4567899999999999999999999999999765 47777765 589999


Q ss_pred             CCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc---c---ccCCCeEEEEECCCCCeEE
Q psy13076        249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN---P---AHKGGVYAVAWKPDGTQLL  322 (423)
Q Consensus       249 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~---~~~~~i~~l~~~~~~~~l~  322 (423)
                      .+...+...+.+|...|++++.+.|| ++++|+..|.+..||.+++...+....   +   ..+.+|.+.+|+..|..|+
T Consensus       347 ~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli  425 (460)
T KOG0285|consen  347 LPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI  425 (460)
T ss_pred             CCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence            98888777788999999999999887 788899999999999998876554321   1   2345789999999999999


Q ss_pred             EEeCCCcEEEEecC
Q psy13076        323 TASGDKTCKLWDIE  336 (423)
Q Consensus       323 s~s~d~~i~iwd~~  336 (423)
                      +|..|++|++|.-.
T Consensus       426 t~eadKtIk~~keD  439 (460)
T KOG0285|consen  426 TGEADKTIKMYKED  439 (460)
T ss_pred             eccCCcceEEEecc
Confidence            99999999999643

>KOG0276|consensus

Probab=100.00  E-value=5.1e-31  Score=237.74  Aligned_cols=283  Identities=17%  Similarity=0.245  Sum_probs=232.0

Q ss_pred             ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076         42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP  121 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (423)
                      .+..|.+.|.++.|+|..++++++=..|.|.|||.+++.+.+.+..                                  
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV----------------------------------   53 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV----------------------------------   53 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee----------------------------------
Confidence            5666899999999999999999999999999999998766554421                                  


Q ss_pred             cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        122 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       122 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                              ..-+|.+..|-+..+.+++|+.|..||+|+..+.+.+.  .|+.|++-|++++.+|..+++++.++  +...
T Consensus        54 --------~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~--~FeAH~DyIR~iavHPt~P~vLtsSD--Dm~i  121 (794)
T KOG0276|consen   54 --------SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK--TFEAHSDYIRSIAVHPTLPYVLTSSD--DMTI  121 (794)
T ss_pred             --------cccchhhheeeeccceEEEecCCceEEEEecccceeeE--EeeccccceeeeeecCCCCeEEecCC--ccEE
Confidence                    22367788899999999999999999999998877654  56677889999999999999987654  5567


Q ss_pred             EEEeecCCc-ceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC--CEEE
Q psy13076        202 HVFMSETGT-SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG--SHFA  278 (423)
Q Consensus       202 ~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~  278 (423)
                      .+|+++..- +.....+|...|+.++|+|.++..+++++.|+++++|.........++++|...|+++.+=+-|  .||+
T Consensus       122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI  201 (794)
T KOG0276|consen  122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI  201 (794)
T ss_pred             EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence            789888764 4567789999999999999999999999999999999987777778889999999999997755  5999


Q ss_pred             EEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEE
Q psy13076        279 SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL  358 (423)
Q Consensus       279 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~  358 (423)
                      +|+.|..|+|||..+..++.++.  +|...|..+.|+|.=+.++|||.||++|||+-.+-++..++..+-. +.-.+...
T Consensus       202 sgaDD~tiKvWDyQtk~CV~TLe--GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle-RvW~I~~~  278 (794)
T KOG0276|consen  202 SGADDLTIKVWDYQTKSCVQTLE--GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE-RVWCIAAH  278 (794)
T ss_pred             ecCCCceEEEeecchHHHHHHhh--cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc-eEEEEeec
Confidence            99999999999999999999885  6888999999999999999999999999999988776655543321 11122222


Q ss_pred             ecCcEEEEEeCCCcE
Q psy13076        359 WQGDYLLTVSLSGFI  373 (423)
Q Consensus       359 ~~g~~l~~~~~~~~i  373 (423)
                      ..+..++.|...|.+
T Consensus       279 k~~~~i~vG~Deg~i  293 (794)
T KOG0276|consen  279 KGDGKIAVGFDEGSV  293 (794)
T ss_pred             CCCCeEEEeccCCcE
Confidence            334445555554444

>KOG0292|consensus

Probab=100.00  E-value=5.7e-31  Score=245.89  Aligned_cols=284  Identities=18%  Similarity=0.314  Sum_probs=237.4

Q ss_pred             ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076         42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP  121 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (423)
                      .|+.....|..++|+|..++++++=..|.|++||-.-+-                                         
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----------------------------------------   42 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----------------------------------------   42 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhh-----------------------------------------
Confidence            456667789999999999999999999999999976432                                         


Q ss_pred             cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        122 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       122 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                       +++.|.+|.++|..++|+|+..+++||+.|-+|++|+.++..++..  +.+|-+-|+.+.|++.-.+++++++++  ..
T Consensus        43 -li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft--L~GHlDYVRt~~FHheyPWIlSASDDQ--TI  117 (1202)
T KOG0292|consen   43 -LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT--LLGHLDYVRTVFFHHEYPWILSASDDQ--TI  117 (1202)
T ss_pred             -HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh--hccccceeEEeeccCCCceEEEccCCC--eE
Confidence             3345678999999999999999999999999999999988776543  445667899999999999999887665  46


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce----------------------------
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK----------------------------  253 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~----------------------------  253 (423)
                      ++|.+++++++..+.+|+..|+|..|+|.... ++++|.|.+|++||....+                            
T Consensus       118 rIWNwqsr~~iavltGHnHYVMcAqFhptEDl-IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~Da  196 (1202)
T KOG0292|consen  118 RIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL-IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDA  196 (1202)
T ss_pred             EEEeccCCceEEEEecCceEEEeeccCCccce-EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCe
Confidence            89999999999999999999999999998775 8999999999999853211                            


Q ss_pred             -eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEE
Q psy13076        254 -FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKL  332 (423)
Q Consensus       254 -~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~i  332 (423)
                       .+..+++|...|+.++|+|.-.++++|+.|..|++|.+...+....-.-.+|...|.++-|+|...+++|.|.|++||+
T Consensus       197 VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV  276 (1202)
T KOG0292|consen  197 VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV  276 (1202)
T ss_pred             eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence             2345678999999999999999999999999999999876654433223479999999999999999999999999999


Q ss_pred             EecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcE
Q psy13076        333 WDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFI  373 (423)
Q Consensus       333 wd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i  373 (423)
                      ||....+.+.+|...+. +.-.++..|....+++|..+|.+
T Consensus       277 wDm~kRt~v~tfrrend-RFW~laahP~lNLfAAgHDsGm~  316 (1202)
T KOG0292|consen  277 WDMTKRTSVQTFRREND-RFWILAAHPELNLFAAGHDSGMI  316 (1202)
T ss_pred             EecccccceeeeeccCC-eEEEEEecCCcceeeeecCCceE
Confidence            99999998888865433 33345556677777777766655

>KOG1407|consensus

Probab=100.00  E-value=2e-30  Score=210.63  Aligned_cols=288  Identities=20%  Similarity=0.293  Sum_probs=222.7

Q ss_pred             eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC
Q psy13076         41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN  120 (423)
Q Consensus        41 ~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  120 (423)
                      +.+++|.++|.+++|+.+|..|++|+.|+++++|+++..+....                                    
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~------------------------------------   57 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE------------------------------------   57 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh------------------------------------
Confidence            45789999999999999999999999999999999976432211                                    


Q ss_pred             CcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        121 PAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                          ..+.+|.+.|-.++|+| ....+++++.|.+|++||....++.......   ++-.-+.|+|+|.++++.+.++..
T Consensus        58 ----~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~---~eni~i~wsp~g~~~~~~~kdD~i  130 (313)
T KOG1407|consen   58 ----LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK---GENINITWSPDGEYIAVGNKDDRI  130 (313)
T ss_pred             ----hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc---CcceEEEEcCCCCEEEEecCcccE
Confidence                13568888888889987 6779999999999999999988876544332   223468999999999887655432


Q ss_pred             eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEE
Q psy13076        200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFAS  279 (423)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s  279 (423)
                        ..++..+.+ +..-......++.+.|+-+++..+++ +..|.+.+...+..+......+|+....|+.|+|+|+|||+
T Consensus       131 --t~id~r~~~-~~~~~~~~~e~ne~~w~~~nd~Fflt-~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~  206 (313)
T KOG1407|consen  131 --TFIDARTYK-IVNEEQFKFEVNEISWNNSNDLFFLT-NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFAT  206 (313)
T ss_pred             --EEEEecccc-eeehhcccceeeeeeecCCCCEEEEe-cCCceEEEEeccccccccccccCCcceEEEEECCCCceEee
Confidence              222222222 22222344567788888666654444 55689999988888888889999999999999999999999


Q ss_pred             EEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEe
Q psy13076        280 AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW  359 (423)
Q Consensus       280 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~  359 (423)
                      |+.|-.+-+||...--+...+.  .+.=+|+.++|+.+|++||+||.|..|-|=++++|..+.+                
T Consensus       207 GsADAlvSLWD~~ELiC~R~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e----------------  268 (313)
T KOG1407|consen  207 GSADALVSLWDVDELICERCIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE----------------  268 (313)
T ss_pred             ccccceeeccChhHhhhheeec--cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE----------------
Confidence            9999999999988766665554  4677899999999999999999999999888887764322                


Q ss_pred             cCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCC---------CcEEEeeCC
Q psy13076        360 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD---------GFITRWNAK  422 (423)
Q Consensus       360 ~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D---------~~i~~W~~~  422 (423)
                                                   -.|+++..+++|+|...+||-++.|         |.++++-++
T Consensus       269 -----------------------------I~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  269 -----------------------------IPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             -----------------------------eeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence                                         1256788999999999999866544         577887654

>KOG2106|consensus

Probab=100.00  E-value=1e-28  Score=217.80  Aligned_cols=349  Identities=17%  Similarity=0.250  Sum_probs=248.6

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCce
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPI   94 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~   94 (423)
                      .++-+++|-.+|.|.+|+..+. +..+...+|.+.|.+|..-.+|.+| ||+.|+.|..||-.-.+......+.+.+.+-
T Consensus       256 engdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iR  333 (626)
T KOG2106|consen  256 ENGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIR  333 (626)
T ss_pred             CCCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCee
Confidence            4667888999999999999764 3344444999999999999998755 6999999999994433333333333444333


Q ss_pred             -EEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC
Q psy13076         95 -VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP  173 (423)
Q Consensus        95 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  173 (423)
                       ++...++  +++.+..|.+..-.++++- ..+-.+|....+.++.+|+...++|++.|+++++|+  +.+..+...+  
T Consensus       334 tv~e~~~d--i~vGTtrN~iL~Gt~~~~f-~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~--  406 (626)
T KOG2106|consen  334 TVAEGKGD--ILVGTTRNFILQGTLENGF-TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII--  406 (626)
T ss_pred             EEecCCCc--EEEeeccceEEEeeecCCc-eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe--
Confidence             3333333  6777778888877776653 334468999999999999999999999999999999  4444444443  


Q ss_pred             CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce
Q psy13076        174 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK  253 (423)
Q Consensus       174 ~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~  253 (423)
                       ..++.+++|+|.| .+++                                             |+..|...+.|.++..
T Consensus       407 -~d~~~~~~fhpsg-~va~---------------------------------------------Gt~~G~w~V~d~e~~~  439 (626)
T KOG2106|consen  407 -EDPAECADFHPSG-VVAV---------------------------------------------GTATGRWFVLDTETQD  439 (626)
T ss_pred             -cCceeEeeccCcc-eEEE---------------------------------------------eeccceEEEEecccce
Confidence             3567788888877 3333                                             3333334444433322


Q ss_pred             eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc-ceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEE
Q psy13076        254 FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKL  332 (423)
Q Consensus       254 ~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~i  332 (423)
                      ....-.. ..++++++|+|+|.+||.|+.|+.|++|...... ...... ..+...|+.+.|++|+++|.+.+.|-.|..
T Consensus       440 lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-k~~gs~ithLDwS~Ds~~~~~~S~d~eiLy  517 (626)
T KOG2106|consen  440 LVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-KCSGSPITHLDWSSDSQFLVSNSGDYEILY  517 (626)
T ss_pred             eEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-eecCceeEEeeecCCCceEEeccCceEEEE
Confidence            2111122 6679999999999999999999999999876544 333332 234478999999999999999999999999


Q ss_pred             EecCCcceeeeeeeCceeE------------------eeEEEEEecCcEEEEEeCCCcEEEEec--CCCCCceEEeccCC
Q psy13076        333 WDIETKSAVSEFLMGNQVE------------------DQQVSCLWQGDYLLTVSLSGFISYLDV--NNPSTPIRVIKGHN  392 (423)
Q Consensus       333 wd~~~~~~i~~~~~~~~~~------------------~~~~~~~~~g~~l~~~~~~~~i~~~~~--~~~~~~~~~~~~h~  392 (423)
                      |.....+.+.....- ...                  ....+.+...+.+++|...|.++++..  ..+..+.+...+|+
T Consensus       518 W~~~~~~~~ts~kDv-kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs  596 (626)
T KOG2106|consen  518 WKPSECKQITSVKDV-KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHS  596 (626)
T ss_pred             EccccCcccceecce-eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeecccc
Confidence            955443333221100 000                  001111234667788888999888754  46677788899999


Q ss_pred             CceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        393 KPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       393 ~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      .-|++++|.-+...|++.+.|..|..|++.
T Consensus       597 ~~vt~V~Fl~~d~~li~tg~D~Si~qW~lv  626 (626)
T KOG2106|consen  597 SHVTNVAFLCKDSHLISTGKDTSIMQWRLV  626 (626)
T ss_pred             ceeEEEEEeeCCceEEecCCCceEEEEEeC
Confidence            999999999999999999999999999863

>KOG1063|consensus

Probab=99.98  E-value=9.4e-30  Score=232.17  Aligned_cols=399  Identities=21%  Similarity=0.290  Sum_probs=275.5

Q ss_pred             eeEEEE-eCCEEEEEeccceEEEE-ecc-CCCCceeecccccCceeEEEEeCCCC---eEEEecCCCceEEeecCCccee
Q psy13076          9 QVSCLW-QGDYLLTVSLSGFISYL-DVN-NPSTPIRVIKGHNKPITALALSPDRG---TVFTGSHDGFITRWNAKTEYIF   82 (423)
Q Consensus         9 ~~~~~~-~~~~~~~~~~dg~i~~~-d~~-~~~~~~~~~~gh~~~V~~l~~~~~~~---~l~sg~~D~~i~vW~~~~~~~~   82 (423)
                      |++..| .+.++++++.+..+..+ .-. ...+.+..++||.+-|.+|+|...+.   +|+|+|+|..||+|.+.-+...
T Consensus       150 cL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~  229 (764)
T KOG1063|consen  150 CLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE  229 (764)
T ss_pred             HHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc
Confidence            455666 57777776644333222 211 11245567899999999999988544   7999999999999987532211


Q ss_pred             ecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076         83 ATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~  162 (423)
                      ....+..     .....+++..++....-...+      .....+.||.+=|+++.|+|.+..|+|+++|.++.+|.-.+
T Consensus       230 ~~~~~e~-----~~t~~~~~~~f~~l~~i~~~i------s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~  298 (764)
T KOG1063|consen  230 DSNERED-----SLTTLSNLPVFMILEEIQYRI------SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDE  298 (764)
T ss_pred             ccccccc-----ccccccCCceeeeeeeEEEEE------ehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCC
Confidence            1111100     001111111122111111111      12246679999999999999999999999999999999766


Q ss_pred             CceeEEe-----eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC-C--cceecccCCCcceeEEEEecCCCee
Q psy13076        163 KEHILKN-----EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-G--TSVGEISGQSKPINSCDFKPSRPFR  234 (423)
Q Consensus       163 ~~~~~~~-----~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~~  234 (423)
                      ...++..     +..+..+......|+|++..+++-+....  .++|.... .  .....+.+|...|..++|+|.+.| 
T Consensus       299 ~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg--~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef-  375 (764)
T KOG1063|consen  299 NTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG--FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF-  375 (764)
T ss_pred             ccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc--EEEEeccCccceeeccccccccccceeeeecCCCCE-
Confidence            5433321     11122234567889999987776554332  45565222 1  234567899999999999999998 


Q ss_pred             EEEEeCCCeEEEEcCCC----ceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECC------------------
Q psy13076        235 IITGSEDNTIAVFEGPP----FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA------------------  292 (423)
Q Consensus       235 ~~s~s~d~~i~~~~~~~----~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~------------------  292 (423)
                      +++.+.|.+-++|-...    +.-....+-|...++|+++-+....+++|..++.+++|+..                  
T Consensus       376 lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~  455 (764)
T KOG1063|consen  376 LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGS  455 (764)
T ss_pred             EEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCc
Confidence            78889999999985331    12223345677788999998865678888889999999621                  


Q ss_pred             -------------------------Cccc----eec--------ccc-------------------cccCCCeEEEEECC
Q psy13076        293 -------------------------SADL----VSE--------LGN-------------------PAHKGGVYAVAWKP  316 (423)
Q Consensus       293 -------------------------~~~~----~~~--------~~~-------------------~~~~~~i~~l~~~~  316 (423)
                                               +|..    ..+        +..                   -+|.-.|.+++.+|
T Consensus       456 ~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~  535 (764)
T KOG1063|consen  456 DELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP  535 (764)
T ss_pred             hhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC
Confidence                                     0000    000        000                   14777899999999


Q ss_pred             CCCeEEEEeCCC-----cEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC---CceEEe
Q psy13076        317 DGTQLLTASGDK-----TCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS---TPIRVI  388 (423)
Q Consensus       317 ~~~~l~s~s~d~-----~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~---~~~~~~  388 (423)
                      +|+++||++...     .|++|+..+...+..+ ..+......+.++|+|.+|++++.|+.+.+|..+...   ......
T Consensus       536 ~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~  614 (764)
T KOG1063|consen  536 TGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACL  614 (764)
T ss_pred             CCCEEeehhhhCCccceEEEEEeccchhhhhee-cccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccc
Confidence            999999998765     4999999988766643 4566777888999999999999999999999886432   224457


Q ss_pred             ccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        389 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       389 ~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      +.|++-|++++|+|++.+++|+|.|++|++|...
T Consensus       615 k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  615 KAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP  648 (764)
T ss_pred             cccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence            8999999999999999999999999999999753

>KOG1446|consensus

Probab=99.98  E-value=3.4e-29  Score=209.33  Aligned_cols=289  Identities=17%  Similarity=0.274  Sum_probs=215.8

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec--CCeEEE
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVII  115 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i  115 (423)
                      ++.+.|+.-.+.|+++.|+++|.+|++++.|.+++++|..+++..+++.....|..++-..+.+...+..+.  +++++.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            445577777889999999999999999999999999999999988888776667665544444444443333  578999


Q ss_pred             EecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076        116 RNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE  195 (423)
Q Consensus       116 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~  195 (423)
                      .++.+.+.++.|.||...|++++.+|-+..++|++.|++||+||++..++.-.....    .-..++|.|+|-.      
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~----~~pi~AfDp~GLi------  154 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS----GRPIAAFDPEGLI------  154 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC----CCcceeECCCCcE------
Confidence            999999999999999999999999999999999999999999999865543211111    1123556666544      


Q ss_pred             CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc-----eeeeeccccccCeEEEEE
Q psy13076        196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-----KFKMTKQEHSRFVQAVRY  270 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~-----~~~~~~~~~~~~i~~l~~  270 (423)
                                                             +|++...+.|++||.+.+     .............+.+.|
T Consensus       155 ---------------------------------------fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~F  195 (311)
T KOG1446|consen  155 ---------------------------------------FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEF  195 (311)
T ss_pred             ---------------------------------------EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEE
Confidence                                                   344444446777765432     111111234456789999


Q ss_pred             CCCCCEEEEEEecCeEEEEECCCccceecccccccCCC-eEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCce
Q psy13076        271 SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGG-VYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ  349 (423)
Q Consensus       271 s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~  349 (423)
                      ||||++++.++..+.+++.|.-+|.....+......+. .-+..|.||++++++|+.||+|.+|+++++..+..      
T Consensus       196 S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~------  269 (311)
T KOG1446|consen  196 SPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV------  269 (311)
T ss_pred             cCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE------
Confidence            99999999999999999999999987776654322222 24678999999999999999999999988764433      


Q ss_pred             eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc-CCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        350 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       350 ~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                                                            +++ |..++.++.|+|.--+++|++  ..+.+|=+
T Consensus       270 --------------------------------------~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p  302 (311)
T KOG1446|consen  270 --------------------------------------LRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLP  302 (311)
T ss_pred             --------------------------------------ecCCCCCCccccccCCceeeeeecC--ceEEEEec
Confidence                                                  233 567788888998877777665  46777743

>KOG0316|consensus

Probab=99.98  E-value=1.4e-29  Score=202.70  Aligned_cols=284  Identities=21%  Similarity=0.293  Sum_probs=230.9

Q ss_pred             cccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076        124 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV  203 (423)
Q Consensus       124 ~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~  203 (423)
                      .+++..|+++|..++|+-||+|.++++.|.+||+|+...+..+  ..+.+++.+|.+++.+.|+..++.++.+  +...+
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--ktYsghG~EVlD~~~s~Dnskf~s~GgD--k~v~v   85 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--KTYSGHGHEVLDAALSSDNSKFASCGGD--KAVQV   85 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--eeecCCCceeeeccccccccccccCCCC--ceEEE
Confidence            3456789999999999999999999999999999998766544  4566778899999999999988877654  55689


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC--ceeeeeccccccCeEEEEECCCCCEEEEEE
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP--FKFKMTKQEHSRFVQAVRYSPSGSHFASAG  281 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~--~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s  281 (423)
                      |+.++|+.++.+.+|...|+.+.|+.... .+++|+-|..+++||.+.  +++...+..-.+.|.++..+  +..+++||
T Consensus        86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             EEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence            99999999999999999999999998765 589999999999999653  34445556666778888775  45799999


Q ss_pred             ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEE-ec
Q psy13076        282 FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL-WQ  360 (423)
Q Consensus       282 ~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~-~~  360 (423)
                      .||+++.||++.|+.....    ...+|++++|+++++.++.++.|+++|+.|-.+++++..+..........-++. ..
T Consensus       163 ~DGtvRtydiR~G~l~sDy----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs  238 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSSDY----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS  238 (307)
T ss_pred             cCCcEEEEEeecceeehhh----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence            9999999999999876554    346799999999999999999999999999999999988865443222222222 34


Q ss_pred             CcEEEEEeCCCcEEEEecCCCCCceEEeccCCCc-eeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        361 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP-ITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       361 g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~-v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      ...+++|+.||.+++||+.+... +..+..|... |.+++++|....++++.. +.+.+|-
T Consensus       239 dthV~sgSEDG~Vy~wdLvd~~~-~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~  297 (307)
T KOG0316|consen  239 DTHVFSGSEDGKVYFWDLVDETQ-ISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY  297 (307)
T ss_pred             ceeEEeccCCceEEEEEecccee-eeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence            56678999999999999988644 4567788888 899999998877776653 4456663

>KOG0277|consensus

Probab=99.97  E-value=8.5e-31  Score=212.01  Aligned_cols=239  Identities=23%  Similarity=0.405  Sum_probs=193.1

Q ss_pred             ceeeEEEE---eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCccee
Q psy13076          7 DQQVSCLW---QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIF   82 (423)
Q Consensus         7 ~~~~~~~~---~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~   82 (423)
                      |-.+-+-|   -...+++|+.||++++||+..+.+|+..++.|..+|.++.|++. ++.++++|+|++||+|+-.-+   
T Consensus        61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~---  137 (311)
T KOG0277|consen   61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP---  137 (311)
T ss_pred             cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC---
Confidence            33344445   26778999999999999998889999999999999999999995 567888899999999986532   


Q ss_pred             ecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcC
Q psy13076         83 ATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTV  161 (423)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~  161 (423)
                                                             ..+.+|.||.+.|...+|+| .+..+++++.|+++++||++
T Consensus       138 ---------------------------------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr  178 (311)
T KOG0277|consen  138 ---------------------------------------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR  178 (311)
T ss_pred             ---------------------------------------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence                                                   12335789999999999999 78899999999999999986


Q ss_pred             CCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC
Q psy13076        162 NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED  241 (423)
Q Consensus       162 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d  241 (423)
                      .....+.                                              +..|...|.+|+|+..++.+++||+.|
T Consensus       179 ~~gk~~~----------------------------------------------i~ah~~Eil~cdw~ky~~~vl~Tg~vd  212 (311)
T KOG0277|consen  179 SPGKFMS----------------------------------------------IEAHNSEILCCDWSKYNHNVLATGGVD  212 (311)
T ss_pred             CCCceeE----------------------------------------------EEeccceeEeecccccCCcEEEecCCC
Confidence            4321111                                              122445677888888888889999999


Q ss_pred             CeEEEEcCCCce-eeeeccccccCeEEEEECCCC-CEEEEEEecCeEEEEECCCccce-ecccccccCCCeEEEEECC-C
Q psy13076        242 NTIAVFEGPPFK-FKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLV-SELGNPAHKGGVYAVAWKP-D  317 (423)
Q Consensus       242 ~~i~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~g-~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~i~~l~~~~-~  317 (423)
                      +.|+.||.+..+ ....+.+|.-.|+.++|||.. ..||++++|=++++||....... .+.  ..|+.-+.++.|++ +
T Consensus       213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~--~~HtEFv~g~Dws~~~  290 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV--DHHTEFVCGLDWSLFD  290 (311)
T ss_pred             ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh--hccceEEecccccccc
Confidence            999999987654 234567899999999999975 47899999999999998755433 333  36888899999998 6


Q ss_pred             CCeEEEEeCCCcEEEEec
Q psy13076        318 GTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       318 ~~~l~s~s~d~~i~iwd~  335 (423)
                      +.++++++.|..+.||+.
T Consensus       291 ~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  291 PGQVASTGWDELLYVWNP  308 (311)
T ss_pred             Cceeeecccccceeeecc
Confidence            779999999999999984

>KOG1063|consensus

Probab=99.97  E-value=9.6e-29  Score=225.62  Aligned_cols=402  Identities=17%  Similarity=0.255  Sum_probs=270.4

Q ss_pred             eCCEEEEEeccceEEEEeccCCC----------------Cc-------e-------eecccccCceeEEEEeCCCCeEEE
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPS----------------TP-------I-------RVIKGHNKPITALALSPDRGTVFT   64 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~----------------~~-------~-------~~~~gh~~~V~~l~~~~~~~~l~s   64 (423)
                      +.-+||++|.|-.||+|.+.-..                .+       +       ..+.||++-|.++.|.|++..|+|
T Consensus       205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS  284 (764)
T KOG1063|consen  205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS  284 (764)
T ss_pred             CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence            35689999999999999875333                01       1       124599999999999999989999


Q ss_pred             ecCCCceEEeecCCc--c---e--eecccCCCCCCceEEeeCCCCCeEEEec-CCeEEEEecCCC---cccccccCCcce
Q psy13076         65 GSHDGFITRWNAKTE--Y---I--FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP---AISDIYTEHSCA  133 (423)
Q Consensus        65 g~~D~~i~vW~~~~~--~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~---~~~~~~~~h~~~  133 (423)
                      +|.|.++.+|.-...  -   .  +..+. ...+-.....++|+++.++..+ ....++|..+++   .......||...
T Consensus       285 ASaDksmiiW~pd~~tGiWv~~vRlGe~g-g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~  363 (764)
T KOG1063|consen  285 ASADKSMIIWKPDENTGIWVDVVRLGEVG-GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG  363 (764)
T ss_pred             cccCcceEEEecCCccceEEEEEEeeccc-ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence            999999999975432  1   1  11111 1111112233566665555543 456788873332   234567899999


Q ss_pred             EEEEEECCCCCEEEEEccCCcEEEEEcCCCce----eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEee---
Q psy13076        134 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEH----ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS---  206 (423)
Q Consensus       134 i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~---  206 (423)
                      |..+.|+|.|+|++|.+.|.+-|++---..+.    +-+.+.  |+.-.++++|-+..-.++..+  +++..+++..   
T Consensus       364 V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQi--HGyDl~c~~~vn~~~~FVSgA--dEKVlRvF~aPk~  439 (764)
T KOG1063|consen  364 VKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQI--HGYDLTCLSFVNEDLQFVSGA--DEKVLRVFEAPKS  439 (764)
T ss_pred             ceeeeecCCCCEEEEeccccceeeecccccccceeeeccccc--ccccceeeehccCCceeeecc--cceeeeeecCcHH
Confidence            99999999999999999999999976431111    111222  233456666665322222221  1111111100   


Q ss_pred             ----------------------------------------cCCc---------------------------------cee
Q psy13076        207 ----------------------------------------ETGT---------------------------------SVG  213 (423)
Q Consensus       207 ----------------------------------------~~~~---------------------------------~~~  213 (423)
                                                              ++|.                                 .+.
T Consensus       440 fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~  519 (764)
T KOG1063|consen  440 FVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVH  519 (764)
T ss_pred             HHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhH
Confidence                                                    0000                                 123


Q ss_pred             cccCCCcceeEEEEecCCCeeEEEEeCCC-----eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEE
Q psy13076        214 EISGQSKPINSCDFKPSRPFRIITGSEDN-----TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL  288 (423)
Q Consensus       214 ~~~~~~~~i~~~~~~~~~~~~~~s~s~d~-----~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~v  288 (423)
                      .+.+|...|.+++.+|++++ +|++....     .|++|+.........+..|.-.|+.++|||||+||++.+.|.++.+
T Consensus       520 KLYGHGyEv~~l~~s~~gnl-iASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl  598 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTGNL-IASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL  598 (764)
T ss_pred             HhccCceeEEEEEecCCCCE-EeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence            45678889999999999986 77776543     5899998777767778899999999999999999999999999999


Q ss_pred             EECCCccce-ecc-cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc--ceeeee---eeCceeEeeEEEEE---
Q psy13076        289 YDGASADLV-SEL-GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK--SAVSEF---LMGNQVEDQQVSCL---  358 (423)
Q Consensus       289 wd~~~~~~~-~~~-~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~--~~i~~~---~~~~~~~~~~~~~~---  358 (423)
                      |........ ..+ ..++|+.-|++..|+|++.+|+|+|.|++|++|.....  +.+..+   ..+..+....+...   
T Consensus       599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~  678 (764)
T KOG1063|consen  599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHN  678 (764)
T ss_pred             eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccc
Confidence            987443221 111 13579999999999999999999999999999998776  444442   11222222222111   


Q ss_pred             ecCcEEEEEeCCCcEEEEecCCCCCc-----------eEEeccCCCceeEEEecCC--------CCe--EEEecCCCcEE
Q psy13076        359 WQGDYLLTVSLSGFISYLDVNNPSTP-----------IRVIKGHNKPITALALSPD--------RGT--VFTGSHDGFIT  417 (423)
Q Consensus       359 ~~g~~l~~~~~~~~i~~~~~~~~~~~-----------~~~~~~h~~~v~~i~~sp~--------~~~--l~s~s~D~~i~  417 (423)
                      -.+..++.|-..|.|.+|...-..+.           .....+|...|+.+.|.|.        .++  |++|+.|-.+|
T Consensus       679 e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vr  758 (764)
T KOG1063|consen  679 EKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVR  758 (764)
T ss_pred             cccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeE
Confidence            13446678889999999985411110           0112367888999999985        333  69999999999


Q ss_pred             EeeCC
Q psy13076        418 RWNAK  422 (423)
Q Consensus       418 ~W~~~  422 (423)
                      ++++.
T Consensus       759 i~nv~  763 (764)
T KOG1063|consen  759 IFNVD  763 (764)
T ss_pred             Eeecc
Confidence            99864

>KOG0276|consensus

Probab=99.97  E-value=4.5e-28  Score=218.85  Aligned_cols=392  Identities=18%  Similarity=0.229  Sum_probs=283.7

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      |-+||---|++++...|.+.+|+-++ ...++.|+-.+-||.++.|-+-.+++++|+.|..|||+|.++.+..+.+..+.
T Consensus        19 Vd~HPtePw~la~LynG~V~IWnyet-qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~   97 (794)
T KOG0276|consen   19 VDFHPTEPWILAALYNGDVQIWNYET-QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHS   97 (794)
T ss_pred             eecCCCCceEEEeeecCeeEEEeccc-ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccc
Confidence            44556778999999999999999876 45677888888999999999988999999999999999999998888876543


Q ss_pred             CCCceEEeeCCCCCeEEEec-CCeEEEEecCCC-cccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         90 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP-AISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                      .-.. .+..+|..-.++.++ +-.+++|+.++. .+.++|+||+--|+.++|.| |.+.+||++-|++|++|++....+.
T Consensus        98 DyIR-~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n  176 (794)
T KOG0276|consen   98 DYIR-SIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN  176 (794)
T ss_pred             ccee-eeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc
Confidence            3322 345566665566554 458899999876 56789999999999999999 7889999999999999999776554


Q ss_pred             EEeeecCCCCCeeEEEECCCC--CeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076        167 LKNEFHPIGGPIKDIAWSPDN--QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI  244 (423)
Q Consensus       167 ~~~~~~~~~~~v~~v~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i  244 (423)
                        ..+.++...|+++.+-+-|  +++++.+  ++....+|+.++..+++.+.+|...|..+.|+|.-+. +++|+.||++
T Consensus       177 --fTl~gHekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpi-iisgsEDGTv  251 (794)
T KOG0276|consen  177 --FTLEGHEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPI-IISGSEDGTV  251 (794)
T ss_pred             --eeeeccccCcceEEeccCCCcceEEecC--CCceEEEeecchHHHHHHhhcccccceEEEecCCCcE-EEEecCCccE
Confidence              3455667789999998755  5665544  5567789999999999999999999999999999985 8999999999


Q ss_pred             EEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEEC---------CCccceec------------cccc
Q psy13076        245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDG---------ASADLVSE------------LGNP  303 (423)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~---------~~~~~~~~------------~~~~  303 (423)
                      ++|...++++..++.-..+.+.+++-.+.+..++.|..+|.|.+==.         .+|+.+..            ...+
T Consensus       252 riWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~  331 (794)
T KOG0276|consen  252 RIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQ  331 (794)
T ss_pred             EEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCc
Confidence            99999888887777777778899998888888888888876633110         01111100            0000


Q ss_pred             -----------------ccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC---C---cceeeeeeeCce-----eE----
Q psy13076        304 -----------------AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE---T---KSAVSEFLMGNQ-----VE----  351 (423)
Q Consensus       304 -----------------~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~---~---~~~i~~~~~~~~-----~~----  351 (423)
                                       ...-....++-+|+|++++.| .||.-.||..-   +   |+. .+|.-...     ++    
T Consensus       332 ~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vc-gdGEyiIyTala~RnK~fG~~-~eFvw~~dsne~avRes~~  409 (794)
T KOG0276|consen  332 KEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVC-GDGEYIIYTALALRNKAFGSG-LEFVWAADSNEFAVRESNG  409 (794)
T ss_pred             ccccCCccccchhhhccccccchHHhccCCCCcEEEEe-cCccEEEEEeeehhhcccccc-eeEEEcCCCCeEEEEecCC
Confidence                             000112457778899877665 57877777421   1   111 01100000     00    


Q ss_pred             ----------eeEEE----E-EecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCC
Q psy13076        352 ----------DQQVS----C-LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG  414 (423)
Q Consensus       352 ----------~~~~~----~-~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~  414 (423)
                                ..++.    + ..-|..|+....++.+.+||..+... +..+.   -..-.+.|+-+|.+++.++.|.
T Consensus       410 ~vki~knfke~ksi~~~~~~e~i~gg~Llg~~ss~~~~fydW~~~~l-VrrI~---v~~k~v~w~d~g~lVai~~d~S  483 (794)
T KOG0276|consen  410 NVKIFKNFKEHKSIRPDMSAEGIFGGPLLGVRSSDFLCFYDWESGEL-VRRIE---VTSKHVYWSDNGELVAIAGDDS  483 (794)
T ss_pred             ceEEEecceeccccccccceeeecCCceEEEEeCCeEEEEEcccceE-EEEEe---eccceeEEecCCCEEEEEecCc
Confidence                      00011    1 11356677778889999999877643 33322   2234688998888888887764

>KOG0288|consensus

Probab=99.97  E-value=4.3e-31  Score=227.32  Aligned_cols=288  Identities=21%  Similarity=0.337  Sum_probs=231.9

Q ss_pred             CCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc--eeecccCCCCCCceEEeeCCCCCeEEEe-cCCe
Q psy13076         36 PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY--IFATLPRTQRGQPIVLGGDPKGKNFLYT-NGNS  112 (423)
Q Consensus        36 ~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  112 (423)
                      |+.....+..|.++|..+.|-++...|++|+.|..|++|++...+  ...++. ...+....+.++++++.++.. .++.
T Consensus       164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~  242 (459)
T KOG0288|consen  164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKN  242 (459)
T ss_pred             chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCc
Confidence            555566788999999999999999999999999999999988765  223332 223456678889999887775 4778


Q ss_pred             EEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEE
Q psy13076        113 VIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV  192 (423)
Q Consensus       113 ~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~  192 (423)
                      +++|++++.....+|.||+..|+++.|......+++|+.|.+|++||+.+..+.... +  ....+.+|..++    ..+
T Consensus       243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l--~~S~cnDI~~~~----~~~  315 (459)
T KOG0288|consen  243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV-L--PGSQCNDIVCSI----SDV  315 (459)
T ss_pred             eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc-c--ccccccceEecc----eee
Confidence            999999999999999999999999999988777999999999999999876554321 1  123455666551    223


Q ss_pred             EEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccc----ccCeEEE
Q psy13076        193 VGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH----SRFVQAV  268 (423)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~----~~~i~~l  268 (423)
                      .++..+...+.|+...+.....+..+. .|++++.++++.. +++++.|.++.++|.+.......+...    ....+.+
T Consensus       316 ~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~-lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv  393 (459)
T KOG0288|consen  316 ISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLE-LLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV  393 (459)
T ss_pred             eecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeE-EeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence            344445557788877888877777766 8999999998875 777899999999999887765554332    2337889


Q ss_pred             EECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEE
Q psy13076        269 RYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW  333 (423)
Q Consensus       269 ~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iw  333 (423)
                      .|||++.|+++||.||.|+||+..++++.+.+........|++++|+|.|..|++++.++.+.+|
T Consensus       394 vfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  394 VFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            99999999999999999999999999998888765545589999999999999999999999999

>KOG0772|consensus

Probab=99.97  E-value=4.2e-30  Score=226.99  Aligned_cols=308  Identities=19%  Similarity=0.252  Sum_probs=224.6

Q ss_pred             eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076         40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE  119 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  119 (423)
                      ...|++|...|.++++.|.|..++|||.|-+|++||++.-..  ++..                                
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda--s~~~--------------------------------  205 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA--SMRS--------------------------------  205 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccc--cchh--------------------------------
Confidence            446889999999999999999999999999999999975211  0000                                


Q ss_pred             CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                         .......-...|++++|+|.|..++..+....++|+|-...+.               +.|+.-.+|+         
T Consensus       206 ---fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~---------------~e~~KGDQYI---------  258 (641)
T KOG0772|consen  206 ---FRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEI---------------VEFSKGDQYI---------  258 (641)
T ss_pred             ---hhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCcee---------------eeeeccchhh---------
Confidence               0001111223689999999999888888888999998543221               1122111211         


Q ss_pred             eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecc------ccccCeEEEEECCC
Q psy13076        200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ------EHSRFVQAVRYSPS  273 (423)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~------~~~~~i~~l~~s~~  273 (423)
                                ..+...++|...+++..|+|.....+++++.|+++++|+....+-.....      ...-.++.++|+||
T Consensus       259 ----------~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd  328 (641)
T KOG0772|consen  259 ----------RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD  328 (641)
T ss_pred             ----------hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC
Confidence                      11334568888999999999988889999999999999976554322221      22346789999999


Q ss_pred             CCEEEEEEecCeEEEEECCCccce-ecccccccCC--CeEEEEECCCCCeEEEEeCCCcEEEEecCCcc-eeeeee-eCc
Q psy13076        274 GSHFASAGFDGKVFLYDGASADLV-SELGNPAHKG--GVYAVAWKPDGTQLLTASGDKTCKLWDIETKS-AVSEFL-MGN  348 (423)
Q Consensus       274 g~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~--~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~-~i~~~~-~~~  348 (423)
                      |+.||+|..||.|.+|+..+.... ......+|..  .|++++||++|++|++-+.|+++++||++..+ ++..+. ...
T Consensus       329 g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t  408 (641)
T KOG0772|consen  329 GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT  408 (641)
T ss_pred             cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc
Confidence            999999999999999997543221 1122357877  89999999999999999999999999998753 333322 112


Q ss_pred             eeEeeEEEEEecCcEEEEEeC------CCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEe
Q psy13076        349 QVEDQQVSCLWQGDYLLTVSL------SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW  419 (423)
Q Consensus       349 ~~~~~~~~~~~~g~~l~~~~~------~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W  419 (423)
                      ........++|+.+.|++|+.      .|.+.+||..+.+. ++.+.--+..|..+.|+|.-+.|..|+.||+++++
T Consensus       409 ~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~-v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  409 PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT-VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee-EEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence            233344566788888888764      46788998877554 44554457789999999999999999999999885

>KOG0643|consensus

Probab=99.97  E-value=6.7e-30  Score=208.25  Aligned_cols=278  Identities=21%  Similarity=0.266  Sum_probs=208.8

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      -||...++|++|.+|+.|....+|--.+ .+.+-+++||++.|.||..+.+.+.|+||+.|.++++||+++|+++.....
T Consensus        14 TqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~   92 (327)
T KOG0643|consen   14 TQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT   92 (327)
T ss_pred             ceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec
Confidence            4778888999999999999999998755 677899999999999999999999999999999999999999999887754


Q ss_pred             CCCCCceEEeeCCCCCeEEEecC------CeEEEEecCC-------CcccccccCCcceEEEEEECCCCCEEEEEccCCc
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNG------NSVIIRNIEN-------PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK  154 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~-------~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~  154 (423)
                      ..  ..-.+.++++|++++++.+      ..+.+.++..       .+....+..+.+.++.+-|.|-++++++|..||.
T Consensus        93 ~~--~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~  170 (327)
T KOG0643|consen   93 NS--PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS  170 (327)
T ss_pred             CC--eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc
Confidence            32  2234678888988887643      3566777653       2333445567789999999999999999999999


Q ss_pred             EEEEEcCCCceeEEe-eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCe
Q psy13076        155 VRIWDTVNKEHILKN-EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPF  233 (423)
Q Consensus       155 i~vwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  233 (423)
                      |..||.++++..... +.                                              |.+.|+.+.++|+..+
T Consensus       171 is~~da~~g~~~v~s~~~----------------------------------------------h~~~Ind~q~s~d~T~  204 (327)
T KOG0643|consen  171 ISIYDARTGKELVDSDEE----------------------------------------------HSSKINDLQFSRDRTY  204 (327)
T ss_pred             EEEEEcccCceeeechhh----------------------------------------------hccccccccccCCcce
Confidence            999999886543221 11                                              2223444445555544


Q ss_pred             eEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE-ecC-eEEEEECCCccceec---------c-c
Q psy13076        234 RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG-FDG-KVFLYDGASADLVSE---------L-G  301 (423)
Q Consensus       234 ~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg-~i~vwd~~~~~~~~~---------~-~  301 (423)
                       ++++|.|.+.++||........++. ...++++.+++|....++.|+ .+- -|.-=..+.++-...         + .
T Consensus       205 -FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr  282 (327)
T KOG0643|consen  205 -FITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR  282 (327)
T ss_pred             -EEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence             7889999999999988877766654 356789999999877665554 332 122212222221111         1 1


Q ss_pred             ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        302 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       302 ~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      .++|-++|.+++|||+|+..++|+.||.||+.-+.
T Consensus       283 vkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  283 VKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            24799999999999999999999999999987543

>KOG0274|consensus

Probab=99.97  E-value=5.4e-29  Score=235.27  Aligned_cols=277  Identities=22%  Similarity=0.316  Sum_probs=221.9

Q ss_pred             ccceeeEEEE-eCCEEEEEeccceEEEEeccCCCCceee-cccccCceeEEEEeCCCCeEEEecCCCceEEeecCCccee
Q psy13076          5 VEDQQVSCLW-QGDYLLTVSLSGFISYLDVNNPSTPIRV-IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIF   82 (423)
Q Consensus         5 ~~~~~~~~~~-~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~   82 (423)
                      ++++.+.|.. .++++++++.|..|++||..+ .+.+.+ +.||.+.|.++++...+.+|++|+.|.++|+||..++.+.
T Consensus       206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~-~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNN-GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             cCcchhhhheeecCeEEecCCCceeEEeeccc-ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            3577777874 789999999999999999976 444555 9999999999999887889999999999999998887665


Q ss_pred             ecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076         83 ATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~  162 (423)
                      .                                          ++.+|.+.|.++...  +.++++|+.|.+|++|++.+
T Consensus       285 ~------------------------------------------~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n  320 (537)
T KOG0274|consen  285 H------------------------------------------SLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTN  320 (537)
T ss_pred             E------------------------------------------EecCCCceEEEEEcc--CceEeeccCCceEEEEeccC
Confidence            4                                          345788888888765  45788899999999999986


Q ss_pred             CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076        163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                      +..+....  .+.++                                            |+++.++  ++ .+++|+.|+
T Consensus       321 ~~~l~l~~--~h~~~--------------------------------------------V~~v~~~--~~-~lvsgs~d~  351 (537)
T KOG0274|consen  321 GACLNLLR--GHTGP--------------------------------------------VNCVQLD--EP-LLVSGSYDG  351 (537)
T ss_pred             cceEEEec--ccccc--------------------------------------------EEEEEec--CC-EEEEEecCc
Confidence            65443211  13344                                            4444444  22 488999999


Q ss_pred             eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCc-cceecccccccCCCeEEEEECCCCCeE
Q psy13076        243 TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA-DLVSELGNPAHKGGVYAVAWKPDGTQL  321 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l  321 (423)
                      +|++|+...+++...+.+|..+|.++.+.+. ..+++|+.|+.|++||+.+. +++..+.  +|...+.++.+  .+++|
T Consensus       352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~--~h~~~v~~l~~--~~~~L  426 (537)
T KOG0274|consen  352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ--GHTSLVSSLLL--RDNFL  426 (537)
T ss_pred             eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc--CCccccccccc--cccee
Confidence            9999999999999999999999999988776 89999999999999999998 7877774  57777755544  57899


Q ss_pred             EEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEec-CcEEEEEeCCCcEEEEecCCCCC
Q psy13076        322 LTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ-GDYLLTVSLSGFISYLDVNNPST  383 (423)
Q Consensus       322 ~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~i~~~~~~~~~~  383 (423)
                      ++++.|++|++||..+++++..+...+.   ..+.+... .+.+++++.++.+++||+++...
T Consensus       427 vs~~aD~~Ik~WD~~~~~~~~~~~~~~~---~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  427 VSSSADGTIKLWDAEEGECLRTLEGRHV---GGVSALALGKEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             EeccccccEEEeecccCceeeeeccCCc---ccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence            9999999999999999999888765311   22333333 47889999999999999988644

>KOG0283|consensus

Probab=99.97  E-value=2.4e-29  Score=235.11  Aligned_cols=285  Identities=18%  Similarity=0.254  Sum_probs=196.6

Q ss_pred             cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC-----------CCCCCceEEee-CCCCCeEEEec---
Q psy13076         45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR-----------TQRGQPIVLGG-DPKGKNFLYTN---  109 (423)
Q Consensus        45 gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~---  109 (423)
                      +|++.|.++.||+||++|||||+|+.||||.+...+....-..           .....+..... ...++......   
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            8999999999999999999999999999999765322111000           00001111111 11111111110   


Q ss_pred             CCeEEEEecC----CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC
Q psy13076        110 GNSVIIRNIE----NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP  185 (423)
Q Consensus       110 ~~~~~i~~~~----~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~  185 (423)
                      ... .+.+..    ..+....|.||...|..+.|+.++ +|+|+++|.|||||++..++++..   ..|.+-|+||+|  
T Consensus       345 s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~---F~HndfVTcVaF--  417 (712)
T KOG0283|consen  345 SPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKV---FSHNDFVTCVAF--  417 (712)
T ss_pred             Ccc-ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeE---EecCCeeEEEEe--
Confidence            111 111111    234567899999999999999864 899999999999999987766532   123344555554  


Q ss_pred             CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCe
Q psy13076        186 DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFV  265 (423)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i  265 (423)
                                                                +|.+...+++|+.|+.+++|.++..+...-.. ..+.|
T Consensus       418 ------------------------------------------nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lI  454 (712)
T KOG0283|consen  418 ------------------------------------------NPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLI  454 (712)
T ss_pred             ------------------------------------------cccCCCcEeecccccceEEeecCcCeeEeehh-hhhhh
Confidence                                                      44444458899999999999988766554333 34789


Q ss_pred             EEEEECCCCCEEEEEEecCeEEEEECCCccceecccc-------cccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecCC
Q psy13076        266 QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN-------PAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       266 ~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~~  337 (423)
                      ++++|.|||++.+.|+.+|.+++|+....+.......       ..|. .|+++.|.|.. ..+++.+.|..|||+|.+.
T Consensus       455 TAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~  533 (712)
T KOG0283|consen  455 TAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD  533 (712)
T ss_pred             eeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence            9999999999999999999999999876665433221       1233 79999999854 3466678999999999988


Q ss_pred             cceeeeeeeCceeE-eeEEEEEecCcEEEEEeCCCcEEEEecCC
Q psy13076        338 KSAVSEFLMGNQVE-DQQVSCLWQGDYLLTVSLSGFISYLDVNN  380 (423)
Q Consensus       338 ~~~i~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~i~~~~~~~  380 (423)
                      .+++..|....... ...-++..+|++|++++.|..+++|+...
T Consensus       534 ~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  534 KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            88888775332221 12233445999999999999999999743

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2e-28  Score=248.83  Aligned_cols=251  Identities=16%  Similarity=0.265  Sum_probs=194.8

Q ss_pred             cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076        128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       128 ~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      ..|.+.|.+++|+|+|+++|+|+.|++|+|||........ ...   ..++..                           
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~-~~~---~~~~~~---------------------------  528 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG-RDI---HYPVVE---------------------------  528 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc-ccc---ccceEE---------------------------
Confidence            4588999999999999999999999999999975321000 000   000000                           


Q ss_pred             CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECC-CCCEEEEEEecCeE
Q psy13076        208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKV  286 (423)
Q Consensus       208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~s~dg~i  286 (423)
                             +. +...+.+++|+|.....+++++.|++|++||....+....+..|...|.+++|+| ++.+|++|+.||.|
T Consensus       529 -------~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v  600 (793)
T PLN00181        529 -------LA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSV  600 (793)
T ss_pred             -------ec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEE
Confidence                   00 1124666777775445689999999999999887777778889999999999997 78899999999999


Q ss_pred             EEEECCCccceecccccccCCCeEEEEEC-CCCCeEEEEeCCCcEEEEecCCcce-eeeeeeCceeEeeEEEEEecCcEE
Q psy13076        287 FLYDGASADLVSELGNPAHKGGVYAVAWK-PDGTQLLTASGDKTCKLWDIETKSA-VSEFLMGNQVEDQQVSCLWQGDYL  364 (423)
Q Consensus       287 ~vwd~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~s~s~d~~i~iwd~~~~~~-i~~~~~~~~~~~~~~~~~~~g~~l  364 (423)
                      ++||+.++..+..+.   +...+.++.|+ +++.+|++|+.|++|++||++..+. +..+. ++......+.+. ++..+
T Consensus       601 ~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~l  675 (793)
T PLN00181        601 KLWSINQGVSIGTIK---TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSSTL  675 (793)
T ss_pred             EEEECCCCcEEEEEe---cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCEE
Confidence            999999888776664   23578899995 5799999999999999999987653 33332 222222233333 78899


Q ss_pred             EEEeCCCcEEEEecCCC-----CCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        365 LTVSLSGFISYLDVNNP-----STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       365 ~~~~~~~~i~~~~~~~~-----~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      ++++.|+.+++||+...     ..+++.+.+|...++.++|+|++++|++|+.|+.|++|+..
T Consensus       676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            99999999999999753     34677889999999999999999999999999999999853

>KOG0268|consensus

Probab=99.97  E-value=1.9e-30  Score=219.89  Aligned_cols=283  Identities=18%  Similarity=0.284  Sum_probs=216.2

Q ss_pred             ecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC
Q psy13076         42 VIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN  120 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  120 (423)
                      .|.||.+.|.|++-+|.. ..++||+.||.|++||+.+..++.                                     
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------------------------  103 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------------------------  103 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------------------------
Confidence            367999999999999976 689999999999999998754433                                     


Q ss_pred             CcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        121 PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                           .+..|.+.|..++++.  ..+++++.|.+|+.|-++-. ..  ..+.+ ...+..+.-+..+..++++|..    
T Consensus       104 -----~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~--~tilg-~s~~~gIdh~~~~~~FaTcGe~----  168 (433)
T KOG0268|consen  104 -----TFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PL--HTILG-KSVYLGIDHHRKNSVFATCGEQ----  168 (433)
T ss_pred             -----eeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cc--eeeec-cccccccccccccccccccCce----
Confidence                 3456888999999987  67889999999999997642 11  11111 2334555555556666665532    


Q ss_pred             eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEE
Q psy13076        201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASA  280 (423)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~  280 (423)
                      ..+|+.+...++..+......|.++.|+|....+|++|..|+.|.+||.+.........- .-.-+.++|+|.+-.+++|
T Consensus       169 i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a  247 (433)
T KOG0268|consen  169 IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAA  247 (433)
T ss_pred             eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeec
Confidence            468888888888888888889999999999999999999999999999875543322211 1123579999988889999


Q ss_pred             EecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEec
Q psy13076        281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ  360 (423)
Q Consensus       281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~  360 (423)
                      +.|..++.||++.-+.....- ..|...|.+++|+|.|+-+++||-|++||||....+..-..                 
T Consensus       248 ~ED~nlY~~DmR~l~~p~~v~-~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi-----------------  309 (433)
T KOG0268|consen  248 NEDHNLYTYDMRNLSRPLNVH-KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI-----------------  309 (433)
T ss_pred             cccccceehhhhhhcccchhh-cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh-----------------
Confidence            999999999987654322221 35888999999999999999999999999999876531100                 


Q ss_pred             CcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        361 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       361 g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                                              .+..  --..|.++.||.|.++++|||+|+.||+|..
T Consensus       310 ------------------------Yhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  310 ------------------------YHTK--RMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             ------------------------hhHh--hhheeeEEEEeccccEEEecCCCcceeeeec
Confidence                                    0000  0134999999999999999999999999975

>KOG0283|consensus

Probab=99.97  E-value=1.6e-29  Score=236.30  Aligned_cols=237  Identities=21%  Similarity=0.415  Sum_probs=180.3

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccC-----------------------------------------------------
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNN-----------------------------------------------------   35 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~-----------------------------------------------------   35 (423)
                      .+.++.||+|||+|+.||.||||.+-.                                                     
T Consensus       272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p  351 (712)
T KOG0283|consen  272 AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP  351 (712)
T ss_pred             EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence            355667999999999999999998644                                                     


Q ss_pred             ------CCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec
Q psy13076         36 ------PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN  109 (423)
Q Consensus        36 ------~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (423)
                            -.+|+..|+||.+.|..|+||.+ ++|+|.|.|.|||+|......|+..+                        
T Consensus       352 ~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F------------------------  406 (712)
T KOG0283|consen  352 LKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF------------------------  406 (712)
T ss_pred             CccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE------------------------
Confidence                  01233457899999999999986 57899999999999999887776654                        


Q ss_pred             CCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCC
Q psy13076        110 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ  188 (423)
Q Consensus       110 ~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  188 (423)
                                         .|.+-|+|++|+| |.+||+||+-|+.+|||++...+...-.+.   ..-|++++|.|||+
T Consensus       407 -------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl---~~lITAvcy~PdGk  464 (712)
T KOG0283|consen  407 -------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL---RDLITAVCYSPDGK  464 (712)
T ss_pred             -------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh---hhhheeEEeccCCc
Confidence                               3788899999999 899999999999999999987665432222   25577788888777


Q ss_pred             eEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec---------c
Q psy13076        189 RMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK---------Q  259 (423)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~---------~  259 (423)
                      +.++                                             |+.+|.+++|+....++....         .
T Consensus       465 ~avI---------------------------------------------Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~  499 (712)
T KOG0283|consen  465 GAVI---------------------------------------------GTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK  499 (712)
T ss_pred             eEEE---------------------------------------------EEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence            6443                                             444555555555444432211         1


Q ss_pred             ccccCeEEEEECCCCC-EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        260 EHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       260 ~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      .+. .|+.++|.|... -+++.+.|..|+|+|+++..++..+........-....|+.||+++++++.|..|.+|+....
T Consensus       500 ~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  500 QGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             cCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            223 699999998654 477788999999999988888777754222233357889999999999999999999997543

>KOG0305|consensus

Probab=99.97  E-value=4.1e-29  Score=227.70  Aligned_cols=268  Identities=26%  Similarity=0.391  Sum_probs=212.2

Q ss_pred             CCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeE
Q psy13076        101 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD  180 (423)
Q Consensus       101 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~  180 (423)
                      ..+.++...+..+.+|+..++++......+...|+++.|+++|.+||.|-.+|.|.|||.++.+....... .+...|.+
T Consensus       187 s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-~h~~rvg~  265 (484)
T KOG0305|consen  187 SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-SHASRVGS  265 (484)
T ss_pred             cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-CcCceeEE
Confidence            34567777889999999999998888887789999999999999999999999999999876554322221 02344444


Q ss_pred             EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee-ecc
Q psy13076        181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM-TKQ  259 (423)
Q Consensus       181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~-~~~  259 (423)
                      ++|+                                            .   ..+.+|+.++.|..+|.+...... .+.
T Consensus       266 laW~--------------------------------------------~---~~lssGsr~~~I~~~dvR~~~~~~~~~~  298 (484)
T KOG0305|consen  266 LAWN--------------------------------------------S---SVLSSGSRDGKILNHDVRISQHVVSTLQ  298 (484)
T ss_pred             Eecc--------------------------------------------C---ceEEEecCCCcEEEEEEecchhhhhhhh
Confidence            4444                                            1   247788899999999876443322 377


Q ss_pred             ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECC-CCCeEEEE--eCCCcEEEEecC
Q psy13076        260 EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-DGTQLLTA--SGDKTCKLWDIE  336 (423)
Q Consensus       260 ~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~s~--s~d~~i~iwd~~  336 (423)
                      +|...|..++|++|+.++|+|+.|+.+.|||..+.+....+  ..|.+.|.+++|+| ....||+|  +.|+.|++||..
T Consensus       299 ~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~--~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~  376 (484)
T KOG0305|consen  299 GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF--TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN  376 (484)
T ss_pred             cccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE--eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence            89999999999999999999999999999999666666555  36999999999999 55688886  459999999999


Q ss_pred             CcceeeeeeeCceeEeeEEEEEecC-cEEEE-EeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCC
Q psy13076        337 TKSAVSEFLMGNQVEDQQVSCLWQG-DYLLT-VSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG  414 (423)
Q Consensus       337 ~~~~i~~~~~~~~~~~~~~~~~~~g-~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~  414 (423)
                      +++.+.....+.++....++  +.. +.+.+ |-.++.|.+|+..+.. ++..+.||+..|..+++|||+..|++|+.|.
T Consensus       377 ~g~~i~~vdtgsQVcsL~Ws--k~~kEi~sthG~s~n~i~lw~~ps~~-~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE  453 (484)
T KOG0305|consen  377 TGARIDSVDTGSQVCSLIWS--KKYKELLSTHGYSENQITLWKYPSMK-LVAELLGHTSRVLYLALSPDGETIVTGAADE  453 (484)
T ss_pred             CCcEecccccCCceeeEEEc--CCCCEEEEecCCCCCcEEEEeccccc-eeeeecCCcceeEEEEECCCCCEEEEecccC
Confidence            99998887666554433332  234 33433 3457789999998854 4577899999999999999999999999999


Q ss_pred             cEEEeeC
Q psy13076        415 FITRWNA  421 (423)
Q Consensus       415 ~i~~W~~  421 (423)
                      ++++|++
T Consensus       454 Tlrfw~~  460 (484)
T KOG0305|consen  454 TLRFWNL  460 (484)
T ss_pred             cEEeccc
Confidence            9999985

>KOG0278|consensus

Probab=99.97  E-value=3.1e-30  Score=208.29  Aligned_cols=275  Identities=20%  Similarity=0.330  Sum_probs=233.0

Q ss_pred             EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076         14 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP   93 (423)
Q Consensus        14 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~   93 (423)
                      |||=+|++|+.||.=++-.-+++ .=+.+|+||++.|.+...+.+-...+|++.|-+.++||.-++..++++        
T Consensus        27 p~g~flisa~kd~~pmlr~g~tg-dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--------   97 (334)
T KOG0278|consen   27 PDGYFLISASKDGKPMLRNGDTG-DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--------   97 (334)
T ss_pred             CCceEEEEeccCCCchhccCCCC-CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--------
Confidence            48999999999999998887764 457899999999999999999888999999999999999888766554        


Q ss_pred             eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC
Q psy13076         94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP  173 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  173 (423)
                                                         .|+-.|..++|+.|.++|++|+.+..+||+|++..+.. ..++..
T Consensus        98 -----------------------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap-p~E~~g  141 (334)
T KOG0278|consen   98 -----------------------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP-PKEISG  141 (334)
T ss_pred             -----------------------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC-chhhcC
Confidence                                               36667889999999999999999999999998765543 245667


Q ss_pred             CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce
Q psy13076        174 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK  253 (423)
Q Consensus       174 ~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~  253 (423)
                      +.+.|+.+.|....+.++..++  +...++|+..+++.+..+.. +.+++++.+++++.  +++-...+.|..||...+.
T Consensus       142 htg~Ir~v~wc~eD~~iLSSad--d~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~  216 (334)
T KOG0278|consen  142 HTGGIRTVLWCHEDKCILSSAD--DKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFG  216 (334)
T ss_pred             CCCcceeEEEeccCceEEeecc--CCceEEEEeccCcEEEEEec-CCCCcceeeccCCC--EEEEecCceeEEecccccc
Confidence            7889999999999998888743  44578999999988877754 35789999999987  5666778899999988777


Q ss_pred             eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEE
Q psy13076        254 FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW  333 (423)
Q Consensus       254 ~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iw  333 (423)
                      ....++ .+..|.+...+|+...+++|+.|..++.||..+++.+... ..+|.+.|.++.|+|+|..-++||.||+||||
T Consensus       217 ~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  217 LLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRLW  294 (334)
T ss_pred             ceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence            655543 3456888999999999999999999999999999987664 35799999999999999999999999999999


Q ss_pred             ecCCcce
Q psy13076        334 DIETKSA  340 (423)
Q Consensus       334 d~~~~~~  340 (423)
                      ....++.
T Consensus       295 Qt~~~~~  301 (334)
T KOG0278|consen  295 QTTPGKT  301 (334)
T ss_pred             EecCCCc
Confidence            9876653

>KOG0277|consensus

Probab=99.97  E-value=6.4e-29  Score=201.14  Aligned_cols=283  Identities=20%  Similarity=0.292  Sum_probs=220.2

Q ss_pred             EEEECC--CCCEEEEEc------cCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEee-
Q psy13076        136 VAKYSP--SGFYIASGD------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS-  206 (423)
Q Consensus       136 ~~~~sp--~~~~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~-  206 (423)
                      +++|||  .+++.+...      ..|++.|-++...+.+.........+.+-+++|+++....+.++.+++. .++|+. 
T Consensus        13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGS-Lrl~d~~   91 (311)
T KOG0277|consen   13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGS-LRLFDLT   91 (311)
T ss_pred             eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCce-EEEeccC
Confidence            578888  343332222      2578888888543332222222234667899999987666665555443 455553 


Q ss_pred             cCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCC-CCEEEEEEecCe
Q psy13076        207 ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS-GSHFASAGFDGK  285 (423)
Q Consensus       207 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~s~s~dg~  285 (423)
                      ....++..++.|.++|.++++++.....++++|.|++|++|+....+...+..+|..-|...+|+|. ..+++++|.|+.
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            3456788889999999999999998888999999999999998777777788999999999999996 568999999999


Q ss_pred             EEEEECCCccceecccccccCCCeEEEEECC-CCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEec-CcE
Q psy13076        286 VFLYDGASADLVSELGNPAHKGGVYAVAWKP-DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ-GDY  363 (423)
Q Consensus       286 i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~-g~~  363 (423)
                      +++||.+.......+  .+|...+.++.|+. +.+.|+||+.|+.||.||++.-+..-.-..++......+.++|. ...
T Consensus       172 l~lwdvr~~gk~~~i--~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l  249 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSI--EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL  249 (311)
T ss_pred             EEEEEecCCCceeEE--EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence            999999876544444  57999999999987 66789999999999999998765432223556677777777774 456


Q ss_pred             EEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecC-CCCeEEEecCCCcEEEeeC
Q psy13076        364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       364 l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp-~~~~l~s~s~D~~i~~W~~  421 (423)
                      |++++.|.++++||...+...+.+...|++-|..+.||+ +..++|++|.|..+++|++
T Consensus       250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            789999999999999877777777889999999999998 4568999999999999985

>KOG0973|consensus

Probab=99.97  E-value=8.5e-29  Score=237.19  Aligned_cols=320  Identities=21%  Similarity=0.310  Sum_probs=233.0

Q ss_pred             cccc-cCceeEEEEeCCCCeEEEec--CCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076         43 IKGH-NKPITALALSPDRGTVFTGS--HDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE  119 (423)
Q Consensus        43 ~~gh-~~~V~~l~~~~~~~~l~sg~--~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  119 (423)
                      +-+| +..|.++..+|++..++||+  .|+.+++|+.+.-  +...                            ..++..
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~v--l~~~----------------------------~~~~~~   57 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPV--LDEK----------------------------EEKNEN   57 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccc--cchh----------------------------hhhhcc
Confidence            3445 56799999999999999999  9999999997641  1000                            000111


Q ss_pred             CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                      -++.......|.+.|++++|+|||+|||+|+.|+.|.||+... . .           ...+..+..+.           
T Consensus        58 l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~-~-~-----------~~~~fgs~g~~-----------  113 (942)
T KOG0973|consen   58 LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAE-I-G-----------SGTVFGSTGGA-----------  113 (942)
T ss_pred             cchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecc-c-C-----------Ccccccccccc-----------
Confidence            2344445567999999999999999999999999999999653 1 0           00111111110           


Q ss_pred             eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEE
Q psy13076        200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFAS  279 (423)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s  279 (423)
                          ...+.-+....+.+|...|..+.|+|++.+ +++++.|++|.+|+...+.....+.+|...|-.+.|.|-|+|||+
T Consensus       114 ----~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~-lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~AS  188 (942)
T KOG0973|consen  114 ----KNVESWKVVSILRGHDSDVLDVNWSPDDSL-LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFAS  188 (942)
T ss_pred             ----cccceeeEEEEEecCCCccceeccCCCccE-EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeee
Confidence                111222344556779999999999998775 999999999999999999988899999999999999999999999


Q ss_pred             EEecCeEEEEECCCccceeccccc----ccCCCeEEEEECCCCCeEEEE----eCCCcEEEEecCCcceeeeeeeCceeE
Q psy13076        280 AGFDGKVFLYDGASADLVSELGNP----AHKGGVYAVAWKPDGTQLLTA----SGDKTCKLWDIETKSAVSEFLMGNQVE  351 (423)
Q Consensus       280 ~s~dg~i~vwd~~~~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~s~----s~d~~i~iwd~~~~~~i~~~~~~~~~~  351 (423)
                      -+.|++|++|+..+....+.+..+    .-......+.|+|||++|++.    +.-.++.|.+-.+.+.-..+. ++...
T Consensus       189 qsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-GH~~p  267 (942)
T KOG0973|consen  189 QSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-GHSAP  267 (942)
T ss_pred             ecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-cCCCc
Confidence            999999999998776655544321    123346789999999999885    223468888877666433333 22222


Q ss_pred             eeEEEEEe--------c-----Cc----EEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCC
Q psy13076        352 DQQVSCLW--------Q-----GD----YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG  414 (423)
Q Consensus       352 ~~~~~~~~--------~-----g~----~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~  414 (423)
                      ...+.+.|        +     .+    .+++|+.|+.|.+|+...++..+-...-.+..|.+++|+|||..|..+|.||
T Consensus       268 ~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG  347 (942)
T KOG0973|consen  268 VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG  347 (942)
T ss_pred             eEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence            22222221        1     21    4678899999999999776655444444567899999999999999999999


Q ss_pred             cEEEeeCC
Q psy13076        415 FITRWNAK  422 (423)
Q Consensus       415 ~i~~W~~~  422 (423)
                      +|.+...+
T Consensus       348 tV~~i~Fe  355 (942)
T KOG0973|consen  348 TVALIHFE  355 (942)
T ss_pred             eEEEEEcc
Confidence            99987654

>KOG1407|consensus

Probab=99.97  E-value=3.6e-28  Score=197.60  Aligned_cols=263  Identities=21%  Similarity=0.315  Sum_probs=212.4

Q ss_pred             EeCCEEEEEeccceEEEEeccCCCCc-eeecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCC
Q psy13076         14 WQGDYLLTVSLSGFISYLDVNNPSTP-IRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG   91 (423)
Q Consensus        14 ~~~~~~~~~~~dg~i~~~d~~~~~~~-~~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~   91 (423)
                      -||..|++++.|+.+.+|.+.-.... --.++||.+.|..+.|.|. .+++++++.|.+|++||..++++......    
T Consensus        30 ~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~----  105 (313)
T KOG1407|consen   30 CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET----  105 (313)
T ss_pred             ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec----
Confidence            38999999999999999998643211 1246799999999999984 56899999999999999988766543321    


Q ss_pred             CceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee
Q psy13076         92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF  171 (423)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  171 (423)
                                                             +..-.-+.|+|+|.+++.++.|..|...|.++.+.....++
T Consensus       106 ---------------------------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~  146 (313)
T KOG1407|consen  106 ---------------------------------------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF  146 (313)
T ss_pred             ---------------------------------------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence                                                   11122467999999999999999999999887665544333


Q ss_pred             cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC
Q psy13076        172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP  251 (423)
Q Consensus       172 ~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~  251 (423)
                         .-++..+.|+.++..++.. .+.+. .++..+-.-+.+..++.|.....|+.|+|.+.+ +|+|+.|-.+.+||...
T Consensus       147 ---~~e~ne~~w~~~nd~Fflt-~GlG~-v~ILsypsLkpv~si~AH~snCicI~f~p~Gry-fA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  147 ---KFEVNEISWNNSNDLFFLT-NGLGC-VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRY-FATGSADALVSLWDVDE  220 (313)
T ss_pred             ---cceeeeeeecCCCCEEEEe-cCCce-EEEEeccccccccccccCCcceEEEEECCCCce-EeeccccceeeccChhH
Confidence               2457888999666554443 33332 345555566778889999999999999999997 99999999999999988


Q ss_pred             ceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCC
Q psy13076        252 FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       252 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                      ..+.+....+.-+|+.+.||-+|+|||+||.|..|-|=+.++|..+.+++   +.+....++|+|...+||=++.|+
T Consensus       221 LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  221 LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP---CEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee---ccCCceeEEecCCCceeeEEecCC
Confidence            88888888889999999999999999999999999999999999888874   788899999999999999887764

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=5.6e-28  Score=228.17  Aligned_cols=253  Identities=15%  Similarity=0.228  Sum_probs=177.7

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccC---------CCC---ceeecccccCceeEEEEeC-CCCeEEEecCCCceEEeec
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNN---------PST---PIRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNA   76 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~---------~~~---~~~~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~   76 (423)
                      .+..||+..+++++.+.....|+...         ..+   ....+.||.++|.+++|+| ++++|+||+.|++|++||+
T Consensus        26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi  105 (493)
T PTZ00421         26 STALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI  105 (493)
T ss_pred             ccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence            34557766666666666666665321         111   1125789999999999999 7889999999999999998


Q ss_pred             CCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCC-CEEEEEccCCcE
Q psy13076         77 KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKV  155 (423)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~~~d~~i  155 (423)
                      .++.....                                   .......+.+|...|.+++|+|++ .+|++++.|++|
T Consensus       106 ~~~~~~~~-----------------------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421        106 PEEGLTQN-----------------------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             CCCccccc-----------------------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            75321100                                   011233567899999999999975 699999999999


Q ss_pred             EEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeE
Q psy13076        156 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI  235 (423)
Q Consensus       156 ~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  235 (423)
                      +|||+++.+...  .+..+...|.++                                            +|+|++.. +
T Consensus       151 rIWDl~tg~~~~--~l~~h~~~V~sl--------------------------------------------a~spdG~l-L  183 (493)
T PTZ00421        151 NVWDVERGKAVE--VIKCHSDQITSL--------------------------------------------EWNLDGSL-L  183 (493)
T ss_pred             EEEECCCCeEEE--EEcCCCCceEEE--------------------------------------------EEECCCCE-E
Confidence            999997654332  122233344444                                            44444443 7


Q ss_pred             EEEeCCCeEEEEcCCCceeeeeccccccC-eEEEEECCCCCEEEEEE----ecCeEEEEECCCccceecccccccCCCeE
Q psy13076        236 ITGSEDNTIAVFEGPPFKFKMTKQEHSRF-VQAVRYSPSGSHFASAG----FDGKVFLYDGASADLVSELGNPAHKGGVY  310 (423)
Q Consensus       236 ~s~s~d~~i~~~~~~~~~~~~~~~~~~~~-i~~l~~s~~g~~l~s~s----~dg~i~vwd~~~~~~~~~~~~~~~~~~i~  310 (423)
                      ++++.|+.|++||.+..+.......|... ...+.|.+++.++++++    .|+.|++||+++...........+...+.
T Consensus       184 atgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~  263 (493)
T PTZ00421        184 CTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALF  263 (493)
T ss_pred             EEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceE
Confidence            78889999999998877766666677654 35678899888877655    47899999998654322221112334566


Q ss_pred             EEEECCCCCeEEEEe-CCCcEEEEecCCcceeeee
Q psy13076        311 AVAWKPDGTQLLTAS-GDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       311 ~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~i~~~  344 (423)
                      ...|++++++|++++ .|+.|++||+.+++.+...
T Consensus       264 ~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        264 IPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS  298 (493)
T ss_pred             EEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence            678999999999887 4999999999988765543

>KOG0313|consensus

Probab=99.97  E-value=7.5e-29  Score=211.42  Aligned_cols=262  Identities=20%  Similarity=0.348  Sum_probs=195.0

Q ss_pred             EEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEE
Q psy13076         28 ISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLY  107 (423)
Q Consensus        28 i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (423)
                      |.+..--.+.++...+. |.+-|.++...  +++++||+.||++|+||.+..                            
T Consensus        87 IEYv~~~~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----------------------------  135 (423)
T KOG0313|consen   87 IEYVEAITAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----------------------------  135 (423)
T ss_pred             EEEEEecCCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEecCCc----------------------------
Confidence            33333334555554444 88899988887  679999999999999998642                            


Q ss_pred             ecCCeEEEEecCCCcccccccCCcceEEEEEECCC---CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEEC
Q psy13076        108 TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS---GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWS  184 (423)
Q Consensus       108 ~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s  184 (423)
                                     ..+.+.||.++|.++.+.-.   ...|++++.|.++++|..+..+.......             
T Consensus       136 ---------------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~-------------  187 (423)
T KOG0313|consen  136 ---------------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK-------------  187 (423)
T ss_pred             ---------------eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh-------------
Confidence                           23356789999987776432   33699999999999999876543221111             


Q ss_pred             CCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC--------------
Q psy13076        185 PDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP--------------  250 (423)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~--------------  250 (423)
                                                   ...+|...|.++...+++. ++++||.|.++.+|+.+              
T Consensus       188 -----------------------------~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  188 -----------------------------VCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             -----------------------------HhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhh
Confidence                                         1114555555555555554 46777777777777611              


Q ss_pred             -----------CceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC
Q psy13076        251 -----------PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT  319 (423)
Q Consensus       251 -----------~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~  319 (423)
                                 ......++.+|...|.++.|++ ...+.+++.|.+|+.||+.+++...++.   -+....+++.+|..+
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~---~~ksl~~i~~~~~~~  313 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT---TNKSLNCISYSPLSK  313 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee---cCcceeEeecccccc
Confidence                       1112345678999999999998 6689999999999999999999887764   356789999999999


Q ss_pred             eEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEE
Q psy13076        320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA  399 (423)
Q Consensus       320 ~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~  399 (423)
                      +|++||.|..+|+||.+++.-                                         ..+...+.||+..|.++.
T Consensus       314 Ll~~gssdr~irl~DPR~~~g-----------------------------------------s~v~~s~~gH~nwVssvk  352 (423)
T KOG0313|consen  314 LLASGSSDRHIRLWDPRTGDG-----------------------------------------SVVSQSLIGHKNWVSSVK  352 (423)
T ss_pred             eeeecCCCCceeecCCCCCCC-----------------------------------------ceeEEeeecchhhhhhee
Confidence            999999999999999987531                                         122356789999999999


Q ss_pred             ecCCCCe-EEEecCCCcEEEeeCCC
Q psy13076        400 LSPDRGT-VFTGSHDGFITRWNAKT  423 (423)
Q Consensus       400 ~sp~~~~-l~s~s~D~~i~~W~~~~  423 (423)
                      |+|...+ |+||+.|+++++||+.+
T Consensus       353 wsp~~~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  353 WSPTNEFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             cCCCCceEEEEEecCCeEEEEEecc
Confidence            9997765 78999999999999863

>KOG0289|consensus

Probab=99.97  E-value=3.9e-28  Score=210.41  Aligned_cols=283  Identities=19%  Similarity=0.268  Sum_probs=217.4

Q ss_pred             CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc
Q psy13076         48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY  127 (423)
Q Consensus        48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  127 (423)
                      ..+.++...|....+++|+.|.++.++|-.+.                                          ..+.+|
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~------------------------------------------q~l~~~  257 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN------------------------------------------QILATL  257 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchh------------------------------------------hhhhhc
Confidence            35667777776677888888877777776543                                          344567


Q ss_pred             cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076        128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       128 ~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      .||+..|+.+.|+|+...+++++.|..|++|.+.......  ....+..+|+.+..+|.|.|++.++             
T Consensus       258 ~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~--~~~~h~~~V~~ls~h~tgeYllsAs-------------  322 (506)
T KOG0289|consen  258 KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT--SSRPHEEPVTGLSLHPTGEYLLSAS-------------  322 (506)
T ss_pred             cCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--ccccccccceeeeeccCCcEEEEec-------------
Confidence            8999999999999999999999999999999986544221  2233456677777777666665543             


Q ss_pred             CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec--cccccCeEEEEECCCCCEEEEEEecCe
Q psy13076        208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK--QEHSRFVQAVRYSPSGSHFASAGFDGK  285 (423)
Q Consensus       208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~--~~~~~~i~~l~~s~~g~~l~s~s~dg~  285 (423)
                                                      .|++....+.+........  +...-.+++++|+|||..|++|+.||.
T Consensus       323 --------------------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~  370 (506)
T KOG0289|consen  323 --------------------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV  370 (506)
T ss_pred             --------------------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce
Confidence                                            3333333332222211111  112234789999999999999999999


Q ss_pred             EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEE
Q psy13076        286 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLL  365 (423)
Q Consensus       286 i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~  365 (423)
                      +++||+++......+  ++|.+.|..++|+.+|-||+++++|+.|++||++.-+..+++..........+++...|.+++
T Consensus       371 vkiwdlks~~~~a~F--pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~  448 (506)
T KOG0289|consen  371 VKIWDLKSQTNVAKF--PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLG  448 (506)
T ss_pred             EEEEEcCCccccccC--CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEE
Confidence            999999998877777  569999999999999999999999999999999988888888666555566777778999999


Q ss_pred             EEeCCCcEEEEecCC-CCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        366 TVSLSGFISYLDVNN-PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       366 ~~~~~~~i~~~~~~~-~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      .++.+=.|++++-.+ ....+..+..|++..+.+.|....++++++|.|..++++.+
T Consensus       449 ~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  449 IAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            998777888877433 34556677889999999999999999999999999998764

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.1e-27  Score=226.09  Aligned_cols=286  Identities=14%  Similarity=0.174  Sum_probs=207.4

Q ss_pred             cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc-
Q psy13076         45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI-  123 (423)
Q Consensus        45 gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  123 (423)
                      .|-..|+....++++..+++++.+..+..|+...+-.+..                                .-+.++. 
T Consensus        18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~--------------------------------~~~~G~~~   65 (493)
T PTZ00421         18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLK--------------------------------HTDYGKLA   65 (493)
T ss_pred             cceeccccccccCCCCCcEeECCceEEEEEecCCceEEee--------------------------------ccccccCC
Confidence            3556677777888888899999999999998755422111                                1111111 


Q ss_pred             --cccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        124 --SDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       124 --~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                        ...+.+|.+.|++++|+| ++++|++|+.|++|++||+.+......                                
T Consensus        66 ~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--------------------------------  113 (493)
T PTZ00421         66 SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--------------------------------  113 (493)
T ss_pred             CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--------------------------------
Confidence              234679999999999999 889999999999999999865321000                                


Q ss_pred             eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEE
Q psy13076        201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASA  280 (423)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~  280 (423)
                             ....+..+.+|...|.+++|+|.....+++++.|++|++||.........+..|...|.+++|+|+|.+|+++
T Consensus       114 -------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatg  186 (493)
T PTZ00421        114 -------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT  186 (493)
T ss_pred             -------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEe
Confidence                   0011223456777888899998876568999999999999988777777778899999999999999999999


Q ss_pred             EecCeEEEEECCCccceecccccccCCC-eEEEEECCCCCeEEEEe----CCCcEEEEecCCcce-eeeeeeCceeEeeE
Q psy13076        281 GFDGKVFLYDGASADLVSELGNPAHKGG-VYAVAWKPDGTQLLTAS----GDKTCKLWDIETKSA-VSEFLMGNQVEDQQ  354 (423)
Q Consensus       281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~-i~~l~~~~~~~~l~s~s----~d~~i~iwd~~~~~~-i~~~~~~~~~~~~~  354 (423)
                      +.|+.|++||.++++.+..+.  +|.+. ...+.|.+++..+++++    .|++|++||+++... +.............
T Consensus       187 s~Dg~IrIwD~rsg~~v~tl~--~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~  264 (493)
T PTZ00421        187 SKDKKLNIIDPRDGTIVSSVE--AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFI  264 (493)
T ss_pred             cCCCEEEEEECCCCcEEEEEe--cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEE
Confidence            999999999999988776664  46543 34678999888887764    478999999986543 22221111111112


Q ss_pred             EEEEecCcEEEEEe-CCCcEEEEecCCCCCceEEeccCCCceeEEEecCC
Q psy13076        355 VSCLWQGDYLLTVS-LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD  403 (423)
Q Consensus       355 ~~~~~~g~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~  403 (423)
                      ..+.+++..+++++ .|+.|++|++.++.........+..++..++|.|.
T Consensus       265 ~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        265 PFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            22345788887776 69999999998865432223456678899999985

>KOG2096|consensus

Probab=99.97  E-value=3.5e-28  Score=202.97  Aligned_cols=290  Identities=18%  Similarity=0.228  Sum_probs=201.0

Q ss_pred             cccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc---eeE-EeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        124 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE---HIL-KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       124 ~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~---~~~-~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                      ...+.+|...|++++|+.||++|||++.|++||+|++++-+   +.. ....  ..+-.+.+.|+||-+.+++...... 
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~dhpT~V~FapDc~s~vv~~~~g~-  155 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYDHPTRVVFAPDCKSVVVSVKRGN-  155 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCCCceEEEECCCcceEEEEEccCC-
Confidence            45788999999999999999999999999999999987522   111 1111  1234578999999988887765333 


Q ss_pred             eeEEEeec----CCcceecc--------cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEE
Q psy13076        200 FGHVFMSE----TGTSVGEI--------SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQA  267 (423)
Q Consensus       200 ~~~~~~~~----~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~  267 (423)
                      ...++...    .+.....+        ..|.-++..+-......+ +++++.|..|.+|+.+...+ .+.......-..
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~-imsas~dt~i~lw~lkGq~L-~~idtnq~~n~~  233 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKY-IMSASLDTKICLWDLKGQLL-QSIDTNQSSNYD  233 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceE-EEEecCCCcEEEEecCCcee-eeeccccccccc
Confidence            22333221    11121111        123334444555544544 89999999999999884433 333333333456


Q ss_pred             EEECCCCCEEEEEEecCeEEEEEC---CCcc---ceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc---
Q psy13076        268 VRYSPSGSHFASAGFDGKVFLYDG---ASAD---LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK---  338 (423)
Q Consensus       268 l~~s~~g~~l~s~s~dg~i~vwd~---~~~~---~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~---  338 (423)
                      .++||+|+++++++.---|++|+.   +.|.   ....++..+|...|..++|+|+.+.++|.|.||++||||+.-.   
T Consensus       234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence            789999999999999989999984   2222   2233445689999999999999999999999999999997521   


Q ss_pred             ----ceeeee---eeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEec
Q psy13076        339 ----SAVSEF---LMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS  411 (423)
Q Consensus       339 ----~~i~~~---~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s  411 (423)
                          +.++++   ..........+..+|+|+.|+. +....+.+++.++++..-.-.+.|+..|.+|+|+|+|++++|+|
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence                112222   1111223345677788887654 45567888888875543333468999999999999999999998


Q ss_pred             CCCcEEEee
Q psy13076        412 HDGFITRWN  420 (423)
Q Consensus       412 ~D~~i~~W~  420 (423)
                       |+.+++..
T Consensus       393 -dr~vrv~~  400 (420)
T KOG2096|consen  393 -DRYVRVIR  400 (420)
T ss_pred             -ceeeeeec
Confidence             67777754

>KOG0300|consensus

Probab=99.97  E-value=5.7e-29  Score=207.59  Aligned_cols=329  Identities=19%  Similarity=0.268  Sum_probs=237.4

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      ..++.|.||++.|..++.....+++.+++.|.+.++|.+++++|+.                                  
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~----------------------------------  184 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA----------------------------------  184 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee----------------------------------
Confidence            3455788999999999998888899999999999999998876543                                  


Q ss_pred             cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe---eecCCCCCeeEEEECCCCCeEEEEE
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN---EFHPIGGPIKDIAWSPDNQRMVVVG  194 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~~~v~~v~~s~~~~~~~~~~  194 (423)
                              .|.||.+.|++++|+|++.++++++.|++..||...-.-.....   .-+....+..+-.  .+.+.  .-+
T Consensus       185 --------~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD--e~~~d--~d~  252 (481)
T KOG0300|consen  185 --------TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD--EHNRD--TDS  252 (481)
T ss_pred             --------eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc--ccccc--ccc
Confidence                    57899999999999999999999999999999973211111000   0000001111000  00000  000


Q ss_pred             cCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC
Q psy13076        195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG  274 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g  274 (423)
                      +  .   ..-.......+..+.+|...+.+++|-..+.. +++++.|++..+||.++......+.+|....+.++-+|..
T Consensus       253 ~--~---~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ  326 (481)
T KOG0300|consen  253 S--E---KSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ  326 (481)
T ss_pred             c--c---ccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeeccccceeeeeccCceeccccCcchhccccccCCcc
Confidence            0  0   00000112345678889999999999987765 8999999999999999988888899999999999999999


Q ss_pred             CEEEEEEecCeEEEEECCCccc-eecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce-eeeeeeCceeEe
Q psy13076        275 SHFASAGFDGKVFLYDGASADL-VSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA-VSEFLMGNQVED  352 (423)
Q Consensus       275 ~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~-i~~~~~~~~~~~  352 (423)
                      +++++.+.|.+.++||.+..-. +..+  ++|...|+++.|..+ ..+++|++|.+|++||+++... +.+....  ...
T Consensus       327 rLVvTsSrDtTFRLWDFReaI~sV~VF--QGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd--S~~  401 (481)
T KOG0300|consen  327 RLVVTSSRDTTFRLWDFREAIQSVAVF--QGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD--SPA  401 (481)
T ss_pred             eEEEEeccCceeEeccchhhcceeeee--cccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecC--Ccc
Confidence            9999999999999999874322 2233  579999999999865 4678999999999999987543 2222221  223


Q ss_pred             eEEEEEecCcEEEEEeCCCcEEEEecCCCC---CceEEeccCCCceeEEEecCCCC--eEEEecCCCcEEEeeCCC
Q psy13076        353 QQVSCLWQGDYLLTVSLSGFISYLDVNNPS---TPIRVIKGHNKPITALALSPDRG--TVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       353 ~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~h~~~v~~i~~sp~~~--~l~s~s~D~~i~~W~~~~  423 (423)
                      ..+.++..+..++.--.++.+++||++..+   .|...-+||..-|.|++|..+-.  -|+++|.|.++.=|++.+
T Consensus       402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             ceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence            344444333444555567789999997643   33334579999999999986543  488999999999998764

>KOG0274|consensus

Probab=99.97  E-value=1.1e-27  Score=226.33  Aligned_cols=279  Identities=25%  Similarity=0.437  Sum_probs=225.4

Q ss_pred             eccc-ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC
Q psy13076         42 VIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN  120 (423)
Q Consensus        42 ~~~g-h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  120 (423)
                      .+.+ |...+.+.+|.  +..+++++.|++|++||..+++.+..                                    
T Consensus       202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~------------------------------------  243 (537)
T KOG0274|consen  202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT------------------------------------  243 (537)
T ss_pred             eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe------------------------------------
Confidence            4455 56778888988  56799999999999999877654321                                    


Q ss_pred             CcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        121 PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                           .+.||.+.|++++|..-+.++++|+.|.++|+||..++++.....  ++...+.                     
T Consensus       244 -----~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~---------------------  295 (537)
T KOG0274|consen  244 -----RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVR---------------------  295 (537)
T ss_pred             -----eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEE---------------------
Confidence                 257899999999998778899999999999999988877653322  2222232                     


Q ss_pred             eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEE
Q psy13076        201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASA  280 (423)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~  280 (423)
                                             ++...   ++.+++|+.|.++++|+.+.........+|..+|.++..+  +.++++|
T Consensus       296 -----------------------~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsg  347 (537)
T KOG0274|consen  296 -----------------------CLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSG  347 (537)
T ss_pred             -----------------------EEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEE
Confidence                                   22222   2347788999999999998888777777899999999987  7899999


Q ss_pred             EecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc-ceeeeeeeCceeEeeEEEEEe
Q psy13076        281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK-SAVSEFLMGNQVEDQQVSCLW  359 (423)
Q Consensus       281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~-~~i~~~~~~~~~~~~~~~~~~  359 (423)
                      ++|+.|++||..++++++.+.  +|.+.|.++.+.+. +.+++|+.|++|++||+.++ +++.++......-   .....
T Consensus       348 s~d~~v~VW~~~~~~cl~sl~--gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v---~~l~~  421 (537)
T KOG0274|consen  348 SYDGTVKVWDPRTGKCLKSLS--GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV---SSLLL  421 (537)
T ss_pred             ecCceEEEEEhhhceeeeeec--CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc---ccccc
Confidence            999999999999999999885  59999999988765 89999999999999999999 8887765432211   22334


Q ss_pred             cCcEEEEEeCCCcEEEEecCCCCCceEEecc-CCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        360 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       360 ~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      .+.+|++++.|+.|++||..+.+. ++.+.+ |...|..+++.  ...+++++.||.+++||+.+
T Consensus       422 ~~~~Lvs~~aD~~Ik~WD~~~~~~-~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  422 RDNFLVSSSADGTIKLWDAEEGEC-LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             ccceeEeccccccEEEeecccCce-eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence            789999999999999999988654 567777 77899999888  67888999999999999864

>KOG0650|consensus

Probab=99.96  E-value=3e-28  Score=218.96  Aligned_cols=329  Identities=17%  Similarity=0.277  Sum_probs=231.6

Q ss_pred             CCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCC--eEEEecCCeEE
Q psy13076         37 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGK--NFLYTNGNSVI  114 (423)
Q Consensus        37 ~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  114 (423)
                      ..+-..++||++.|.+|+..|.|.+|+||+.||+||||.+.+++|+..++.  .+..-.++|.|.+.  .++.+.+..+.
T Consensus       390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~~~~~  467 (733)
T KOG0650|consen  390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVGECVL  467 (733)
T ss_pred             ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEecCceE
Confidence            344457899999999999999999999999999999999999999987753  23444566666553  45555555565


Q ss_pred             EEecCCCcccccccCCcceEEEEEECCCCCEEEEE----ccCCcEEEEEcCCCceeEE--eeecCCCCCeeEEEECCCCC
Q psy13076        115 IRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG----DISGKVRIWDTVNKEHILK--NEFHPIGGPIKDIAWSPDNQ  188 (423)
Q Consensus       115 i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~----~~d~~i~vwd~~~~~~~~~--~~~~~~~~~v~~v~~s~~~~  188 (423)
                      +-+..-|.-  ...           -+....|+++    ..++++-.|.-...+....  .....+..+|+.+.|+..|.
T Consensus       468 ivnp~~G~~--~e~-----------~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD  534 (733)
T KOG0650|consen  468 IVNPIFGDR--LEV-----------GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD  534 (733)
T ss_pred             EeCccccch--hhh-----------cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc
Confidence            554432210  000           1111222222    2356777887543221110  11223457899999999999


Q ss_pred             eEEEEEcCCcee-eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEE
Q psy13076        189 RMVVVGEGRERF-GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQA  267 (423)
Q Consensus       189 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~  267 (423)
                      ||+++....... ..+........+.-+......+..+.|+|..++++++.  .+.+++||.....+...+......|..
T Consensus       535 YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~tg~kwiS~  612 (733)
T KOG0650|consen  535 YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLLTGSKWISS  612 (733)
T ss_pred             eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHhcCCeeeee
Confidence            999987654432 22333333333333444556789999999999866543  467999997665555556666778999


Q ss_pred             EEECCCCCEEEEEEecCeEEEEECCCc-cceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076        268 VRYSPSGSHFASAGFDGKVFLYDGASA-DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       268 l~~s~~g~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      ++.+|.|..|+.|+.|+.+.+||+.-. +..+++.  .|...+++++||+.-++|++|+.|+++.||--.--   ..+. 
T Consensus       613 msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr--~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY---~Dl~-  686 (733)
T KOG0650|consen  613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR--LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVY---NDLL-  686 (733)
T ss_pred             eeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh--hhhhhhhhhhhccccceeeeecCCCcEEEEeeeee---hhhh-
Confidence            999999999999999999999998654 3445554  48899999999999999999999999998742110   0000 


Q ss_pred             CceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCc----eeEEEecCCCCeEEEecCCCcEEEe
Q psy13076        347 GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP----ITALALSPDRGTVFTGSHDGFITRW  419 (423)
Q Consensus       347 ~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~----v~~i~~sp~~~~l~s~s~D~~i~~W  419 (423)
                                                     .+..-.|++.++||...    |.++.|+|...||+|+|.||+|++|
T Consensus       687 -------------------------------qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  687 -------------------------------QNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             -------------------------------cCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence                                           01112457888999877    9999999999999999999999998

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=4.6e-27  Score=222.96  Aligned_cols=234  Identities=16%  Similarity=0.271  Sum_probs=170.0

Q ss_pred             EeccceEEEEeccCCCCceeecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcce-eecccCCCCCCceEEeeC
Q psy13076         22 VSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYI-FATLPRTQRGQPIVLGGD   99 (423)
Q Consensus        22 ~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~-~~~~~~~~~~~~~~~~~~   99 (423)
                      |+.+|.|++|+... ..++..+++|.++|.+++|+|+ +.+|+||+.|++|++||+.++.. ...+              
T Consensus        50 GG~~gvI~L~~~~r-~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--------------  114 (568)
T PTZ00420         50 GGLIGAIRLENQMR-KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--------------  114 (568)
T ss_pred             CCceeEEEeeecCC-CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------------
Confidence            66789999999754 3567789999999999999996 78999999999999999875311 0000              


Q ss_pred             CCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCE-EEEEccCCcEEEEEcCCCceeEEeeecCCCCCe
Q psy13076        100 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFY-IASGDISGKVRIWDTVNKEHILKNEFHPIGGPI  178 (423)
Q Consensus       100 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v  178 (423)
                                           ......+.+|...|.+++|+|++.+ +++++.|++|++||+++.+......   +...|
T Consensus       115 ---------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~---~~~~V  170 (568)
T PTZ00420        115 ---------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN---MPKKL  170 (568)
T ss_pred             ---------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe---cCCcE
Confidence                                 0112245689999999999999876 4789999999999998765433221   22456


Q ss_pred             eEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec
Q psy13076        179 KDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK  258 (423)
Q Consensus       179 ~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~  258 (423)
                      .+++|+|+|..                                             +++++.|+.+++||.+.......+
T Consensus       171 ~SlswspdG~l---------------------------------------------Lat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        171 SSLKWNIKGNL---------------------------------------------LSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             EEEEECCCCCE---------------------------------------------EEEEecCCEEEEEECCCCcEEEEE
Confidence            66666665543                                             556677888999988777666667


Q ss_pred             cccccCeEE-----EEECCCCCEEEEEEecC----eEEEEECCC-ccceecccccccCCCeEEEEECCCCCeEEEEeCCC
Q psy13076        259 QEHSRFVQA-----VRYSPSGSHFASAGFDG----KVFLYDGAS-ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       259 ~~~~~~i~~-----l~~s~~g~~l~s~s~dg----~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                      ..|...+..     ..|++++.++++++.|+    +|++||++. .+.+..+....+.+.+.-....++|.++++|+.|+
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            777654432     34568999999988775    799999985 44444443333334333343455689999999999


Q ss_pred             cEEEEecCCcc
Q psy13076        329 TCKLWDIETKS  339 (423)
Q Consensus       329 ~i~iwd~~~~~  339 (423)
                      +||+|++..+.
T Consensus       286 tIr~~e~~~~~  296 (568)
T PTZ00420        286 NCRYYQHSLGS  296 (568)
T ss_pred             eEEEEEccCCc
Confidence            99999997663

>KOG1539|consensus

Probab=99.96  E-value=1.5e-26  Score=215.55  Aligned_cols=398  Identities=17%  Similarity=0.193  Sum_probs=290.9

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP   93 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~   93 (423)
                      -=+-+|.|..+|.|.+++++. .+.+++|+.-.++|++|+|..||. +|++|+.-|.+-+||++..++...+...+.+..
T Consensus       213 aLDVVaiG~~~G~ViifNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv  291 (910)
T KOG1539|consen  213 ALDVVAIGLENGTVIIFNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSV  291 (910)
T ss_pred             cceEEEEeccCceEEEEEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCc
Confidence            456789999999999999987 567888985569999999999985 688898999999999998877665554443333


Q ss_pred             eEEeeCCCCCeEEEe-cCCeEEEEecCC----CcccccccCCcceEEEEEEC-CCCCEEEEEccCCcEEEEEcCCCce--
Q psy13076         94 IVLGGDPKGKNFLYT-NGNSVIIRNIEN----PAISDIYTEHSCAVNVAKYS-PSGFYIASGDISGKVRIWDTVNKEH--  165 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~h~~~i~~~~~s-p~~~~l~s~~~d~~i~vwd~~~~~~--  165 (423)
                      .-+.+-+..-.++.. .++.+++|-.++    |++.+.-.||..+..+++|. .+|.++.+++.|++.+.+++.....  
T Consensus       292 ~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~  371 (910)
T KOG1539|consen  292 TGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ  371 (910)
T ss_pred             ccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence            333333333333332 356677776553    35556667999999999998 6899999999999999998642110  


Q ss_pred             --eE---Ee------ee---cCCCCCeeEEEECCCC----CeEEEEEcCCceeeEEEeecCCcc-eecc-----cCCCcc
Q psy13076        166 --IL---KN------EF---HPIGGPIKDIAWSPDN----QRMVVVGEGRERFGHVFMSETGTS-VGEI-----SGQSKP  221 (423)
Q Consensus       166 --~~---~~------~~---~~~~~~v~~v~~s~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~  221 (423)
                        ..   ..      .+   ...-.+|..++|....    ..++++-. +......|....... ...+     +.....
T Consensus       372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~-~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~  450 (910)
T KOG1539|consen  372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK-GKRSAYTWNFRNKTSGRHVLDPKRFKKDDIN  450 (910)
T ss_pred             hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEec-CcceEEEEeccCcccccEEecCccccccCcc
Confidence              00   00      00   0011245555554321    12333322 233344555443322 1122     123356


Q ss_pred             eeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec---cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcccee
Q psy13076        222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK---QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS  298 (423)
Q Consensus       222 i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~---~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~  298 (423)
                      +.+++.++.+++ .+.|+..|.|-+|+.........+   ..|..+|+.++..--++.+++++.+|-++.||.+......
T Consensus       451 ~~av~vs~CGNF-~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~  529 (910)
T KOG1539|consen  451 ATAVCVSFCGNF-VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK  529 (910)
T ss_pred             eEEEEEeccCce-EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee
Confidence            788999999998 455788899999997665544444   5889999999999999999999999999999998887666


Q ss_pred             cccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEec
Q psy13076        299 ELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDV  378 (423)
Q Consensus       299 ~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~  378 (423)
                      .+..   ...+.++..+.....++.+..|-.|+++|..+.+.+++|. ++..+...++++++|++|++++.|+.|+.||+
T Consensus       530 ~l~l---~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~-gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  530 SLRL---GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW-GHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             eecc---CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh-ccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence            6642   3567888888888899999999999999999999888875 34456677888999999999999999999999


Q ss_pred             CCCCCceEEeccCCCceeEEEecCCCCeEEEecCC-CcEEEeeC
Q psy13076        379 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD-GFITRWNA  421 (423)
Q Consensus       379 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D-~~i~~W~~  421 (423)
                      .++...  ..-.-..+.+++.|||++.+|||+..| .-|++|.-
T Consensus       606 pt~~lI--D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  606 PTGTLI--DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             cCccee--eeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            886432  223456889999999999999999888 67999963

>KOG1332|consensus

Probab=99.96  E-value=1.9e-28  Score=197.39  Aligned_cols=256  Identities=21%  Similarity=0.277  Sum_probs=195.0

Q ss_pred             cccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCc
Q psy13076         43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA  122 (423)
Q Consensus        43 ~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  122 (423)
                      -.+|++.|..+...--|..|+|+++|++|||+.+.+.-                                       ...
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~---------------------------------------~s~   47 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG---------------------------------------QSK   47 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC---------------------------------------Cce
Confidence            35799999999888889999999999999999876420                                       013


Q ss_pred             ccccccCCcceEEEEEECC--CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        123 ISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       123 ~~~~~~~h~~~i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                      ++..|.||.++|+.+.|..  -|.+||++++||.|.||..+++.-....+...+...|++++|.|.+.-           
T Consensus        48 ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheyg-----------  116 (299)
T KOG1332|consen   48 LLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYG-----------  116 (299)
T ss_pred             eeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccc-----------
Confidence            3457889999999999965  799999999999999999877654433444456677888888876532           


Q ss_pred             eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC---ceeeeeccccccCeEEEEECCC---C
Q psy13076        201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP---FKFKMTKQEHSRFVQAVRYSPS---G  274 (423)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~---~~~~~~~~~~~~~i~~l~~s~~---g  274 (423)
                                                      +.|++++.||.|.+++...   .........|.-.+++++|.|-   |
T Consensus       117 --------------------------------l~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen  117 --------------------------------LLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             --------------------------------eEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence                                            2367778888888775432   2234455678888999999886   5


Q ss_pred             -----------CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC----CeEEEEeCCCcEEEEecCCcc
Q psy13076        275 -----------SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG----TQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       275 -----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~l~s~s~d~~i~iwd~~~~~  339 (423)
                                 +.|++|+.|+.|+||+..+++-..+....+|.+.|++++|.|.-    .+|+++|.||++.||... .+
T Consensus       165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e  243 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EE  243 (299)
T ss_pred             cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec-Cc
Confidence                       56999999999999998876533332235799999999999964    589999999999999754 11


Q ss_pred             eeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEe
Q psy13076        340 AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW  419 (423)
Q Consensus       340 ~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W  419 (423)
                      . ..                                       .....++....+++.++||+.|+.|+.++.|..|.+|
T Consensus       244 ~-e~---------------------------------------wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  244 Y-EP---------------------------------------WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             c-Cc---------------------------------------ccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence            0 00                                       0011223356789999999999999999999999999


Q ss_pred             eC
Q psy13076        420 NA  421 (423)
Q Consensus       420 ~~  421 (423)
                      ..
T Consensus       284 ke  285 (299)
T KOG1332|consen  284 KE  285 (299)
T ss_pred             Ee
Confidence            64

>KOG0973|consensus

Probab=99.96  E-value=1e-27  Score=229.89  Aligned_cols=301  Identities=20%  Similarity=0.309  Sum_probs=215.4

Q ss_pred             eeeEEEEeCCEEEEEe--ccceEEEEeccC---------C--CCceeecccccCceeEEEEeCCCCeEEEecCCCceEEe
Q psy13076          8 QQVSCLWQGDYLLTVS--LSGFISYLDVNN---------P--STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW   74 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~--~dg~i~~~d~~~---------~--~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW   74 (423)
                      +-|.|++||...|+|+  .||.+++|+.+-         .  .+.+-.+..|.+.|+|+.|+|||++||+||.|+.|.||
T Consensus        17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW   96 (942)
T KOG0973|consen   17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIW   96 (942)
T ss_pred             EEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEe
Confidence            3578889999999999  999999997521         0  12233456899999999999999999999999999999


Q ss_pred             ecCC---c---------------ceeecccCCCCCCceEEeeCCCCCeEEEec-CCeEEEEecCCCcccccccCCcceEE
Q psy13076         75 NAKT---E---------------YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVN  135 (423)
Q Consensus        75 ~~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~h~~~i~  135 (423)
                      .-..   +               ++...+ +.+.+...=+.++|++..++..+ ++.+.+|+..+-+...++.+|.+.|-
T Consensus        97 ~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK  175 (942)
T KOG0973|consen   97 ERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK  175 (942)
T ss_pred             eecccCCcccccccccccccceeeEEEEE-ecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc
Confidence            8762   0               011222 12334444577899998888754 89999999999999999999999999


Q ss_pred             EEEECCCCCEEEEEccCCcEEEEEcCCCceeEE--eeec--CCCCCeeEEEECCCCCeEEEEEcCCc--eeeEEEeecCC
Q psy13076        136 VAKYSPSGFYIASGDISGKVRIWDTVNKEHILK--NEFH--PIGGPIKDIAWSPDNQRMVVVGEGRE--RFGHVFMSETG  209 (423)
Q Consensus       136 ~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~--~~~~~v~~v~~s~~~~~~~~~~~~~~--~~~~~~~~~~~  209 (423)
                      .+.|.|-|+||||-+.|++|++|+..+-.....  ..+.  .....+..+.|||||+++++..+-+.  ....+...++-
T Consensus       176 Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW  255 (942)
T KOG0973|consen  176 GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW  255 (942)
T ss_pred             ceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCc
Confidence            999999999999999999999999655222211  1111  12234678999999999988654332  22333444444


Q ss_pred             cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC--CEEEEEEecCeEE
Q psy13076        210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG--SHFASAGFDGKVF  287 (423)
Q Consensus       210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~s~s~dg~i~  287 (423)
                      +.-..+.+|..++.++.|+|.    +.           +.+..      .+...       .++-  ..+|+|+.|+.|-
T Consensus       256 k~~~~LvGH~~p~evvrFnP~----lf-----------e~~~~------ng~~~-------~~~~~y~i~AvgSqDrSlS  307 (942)
T KOG0973|consen  256 KVDKDLVGHSAPVEVVRFNPK----LF-----------ERNNK------NGTST-------QPNCYYCIAAVGSQDRSLS  307 (942)
T ss_pred             eeeeeeecCCCceEEEEeChH----Hh-----------ccccc------cCCcc-------CCCcceEEEEEecCCccEE
Confidence            444556667777777777664    11           11000      00000       0000  1478999999999


Q ss_pred             EEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        288 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       288 vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      ||.....+.+.... ...+..|.+++|+|||..|+.+|.||+|.++.++..
T Consensus       308 VW~T~~~RPl~vi~-~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  308 VWNTALPRPLFVIH-NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             EEecCCCCchhhhh-hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            99987766554332 134678999999999999999999999999998764

>KOG0310|consensus

Probab=99.96  E-value=1.9e-27  Score=209.14  Aligned_cols=293  Identities=23%  Similarity=0.358  Sum_probs=215.7

Q ss_pred             eEEEEeccCCCCceeecccccCceeEEEEeCCCCe-EEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeE
Q psy13076         27 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT-VFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNF  105 (423)
Q Consensus        27 ~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~-l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (423)
                      .+++|+-.+   .....+.| ++|.+++|+|..++ +|+.++ -.+.+++..+....+.+                    
T Consensus        10 e~~~w~~~~---~~~~~ke~-~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~--------------------   64 (487)
T KOG0310|consen   10 EIRYWRQET---FPPVHKEH-NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF--------------------   64 (487)
T ss_pred             cchhhhhhc---cccccccc-CcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH--------------------
Confidence            456666432   12234555 59999999998765 444433 56888887765433322                    


Q ss_pred             EEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC
Q psy13076        106 LYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP  185 (423)
Q Consensus       106 ~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~  185 (423)
                                            ..-...+.++.|-.||+.+|.|+..|.|+++|.++...+                   
T Consensus        65 ----------------------srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL-------------------  103 (487)
T KOG0310|consen   65 ----------------------SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL-------------------  103 (487)
T ss_pred             ----------------------HhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH-------------------
Confidence                                  222346889999999999999999999999995442211                   


Q ss_pred             CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCe
Q psy13076        186 DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFV  265 (423)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i  265 (423)
                                                 +.+..|..++....|+|.+...+++|++|+.+++||..+-.......+|.++|
T Consensus       104 ---------------------------R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV  156 (487)
T KOG0310|consen  104 ---------------------------RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV  156 (487)
T ss_pred             ---------------------------HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence                                       12334455566666666666678899999999999988766677888999999


Q ss_pred             EEEEECCCCC-EEEEEEecCeEEEEECCCc-cceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeee
Q psy13076        266 QAVRYSPSGS-HFASAGFDGKVFLYDGASA-DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE  343 (423)
Q Consensus       266 ~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~  343 (423)
                      .+.+++|... ++++||+||.|++||.++. ..+.++   .|..+|..+.+-|.|..+++++. ..||+||+.++.....
T Consensus       157 R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el---nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~  232 (487)
T KOG0310|consen  157 RCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL---NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT  232 (487)
T ss_pred             EeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe---cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh
Confidence            9999999755 8999999999999999876 445555   47889999999999999999876 4699999985544333


Q ss_pred             eeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEE
Q psy13076        344 FLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR  418 (423)
Q Consensus       344 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~  418 (423)
                      ...++.-...++...-++..|++++.|+.+++||+.+- ..++.+ +-.+||.+++.+|+++.++.|-.||.+-+
T Consensus       233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  233 SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             hhhcccceEEEEEeecCCceEeecccccceEEEEccce-EEEEee-ecccceeeEEecCCCceEEEecccceeee
Confidence            22223333334444447899999999999999996552 333333 45789999999999999999999998754

>KOG0288|consensus

Probab=99.96  E-value=1.2e-28  Score=212.31  Aligned_cols=289  Identities=21%  Similarity=0.285  Sum_probs=230.2

Q ss_pred             cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        122 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       122 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                      .....+..|.+.++.+.|-++...|++|+.|..|++|++...+......+.+..++++++.|.++++++++.+.++  -.
T Consensus       166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~--~~  243 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDK--NL  243 (459)
T ss_pred             hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCC--ce
Confidence            3445667899999999999998999999999999999987655433344555667899999999999998876554  35


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG  281 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s  281 (423)
                      ++|..+.......+.+|...++++.|...... +++++.|.+|+.||.....+..++-.. ..+..+..+  +..+++|.
T Consensus       244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~--~~~~~SgH  319 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS--ISDVISGH  319 (459)
T ss_pred             eeeeccchhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheecccccc-ccccceEec--ceeeeecc
Confidence            78888888889999999999999999876653 899999999999997654444332211 122333333  56789999


Q ss_pred             ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCce---eEeeEEEEE
Q psy13076        282 FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ---VEDQQVSCL  358 (423)
Q Consensus       282 ~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~---~~~~~~~~~  358 (423)
                      .|++|+.||.++........  . .+.|+++..++++..|++++.|.++.+.|+++.+....+.....   .......++
T Consensus       320 ~DkkvRfwD~Rs~~~~~sv~--~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS  396 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADKTRSVP--L-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS  396 (459)
T ss_pred             cccceEEEeccCCceeeEee--c-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence            99999999999988777664  2 35899999999999999999999999999999887766643321   223456677


Q ss_pred             ecCcEEEEEeCCCcEEEEecCCCCCceEEec-cCCC-ceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNK-PITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       359 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~h~~-~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      |+++|+++|+.+|.+++|++.++... +++. .+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus       397 pd~~YvaAGS~dgsv~iW~v~tgKlE-~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  397 PDGSYVAAGSADGSVYIWSVFTGKLE-KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CCCceeeeccCCCcEEEEEccCceEE-EEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            89999999999999999999887554 3343 3333 699999999999999999999999994

>KOG2106|consensus

Probab=99.96  E-value=3.7e-25  Score=195.41  Aligned_cols=395  Identities=17%  Similarity=0.202  Sum_probs=282.6

Q ss_pred             eeeEEEEeCCEEEEEeccc--------eEEEEeccCCCCceeecccccCceeEEEEeC--CCCeEEE--ecCCCceEEee
Q psy13076          8 QQVSCLWQGDYLLTVSLSG--------FISYLDVNNPSTPIRVIKGHNKPITALALSP--DRGTVFT--GSHDGFITRWN   75 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg--------~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~--~~~~l~s--g~~D~~i~vW~   75 (423)
                      -|++++||--.+++|-..|        .+|+||..+ -..++++..-+..|.|++|++  .|.+|..  -+.+..+-|||
T Consensus       108 kc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~-L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWd  186 (626)
T KOG2106|consen  108 KCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT-LSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWD  186 (626)
T ss_pred             EEEeecCCceeeccCcccccCCCcCCCeeeeccccc-ceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhh
Confidence            4678888777777787777        499999643 334667777778999999998  3455544  46788899999


Q ss_pred             cCCcceeecccCCCCCCceEEeeCCCCCeEEEecC-CeEEEEecCCCccc---ccccCCc-ceEEEEEECCCCCEEEEEc
Q psy13076         76 AKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG-NSVIIRNIENPAIS---DIYTEHS-CAVNVAKYSPSGFYIASGD  150 (423)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~---~~~~~h~-~~i~~~~~sp~~~~l~s~~  150 (423)
                      .+.+.......... .....+.++|.+..++.+.+ .-+..|+++.+.+.   .+|.++. .-|.+++|.++|. ++||+
T Consensus       187 Wqk~~~~~~vk~sn-e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgD  264 (626)
T KOG2106|consen  187 WQKKAKLGPVKTSN-EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGD  264 (626)
T ss_pred             chhhhccCcceecc-ceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeec
Confidence            99876554433221 12345678998877777665 46778998877654   3555554 6799999999997 78999


Q ss_pred             cCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc-ceecccCCCcceeEEEEec
Q psy13076        151 ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT-SVGEISGQSKPINSCDFKP  229 (423)
Q Consensus       151 ~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~  229 (423)
                      .+|.|.||+........  ..+.+.+.|-+++.-.+|..+-   .++++....|+.+..+ .-.+++....+|..++-..
T Consensus       265 S~G~i~Iw~~~~~~~~k--~~~aH~ggv~~L~~lr~GtllS---GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~  339 (626)
T KOG2106|consen  265 SGGNILIWSKGTNRISK--QVHAHDGGVFSLCMLRDGTLLS---GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGK  339 (626)
T ss_pred             CCceEEEEeCCCceEEe--EeeecCCceEEEEEecCccEee---cCccceEEeccccccccccccCchhcCCeeEEecCC
Confidence            99999999985544332  2336788899999999987543   4556656666633322 2234455556666654332


Q ss_pred             CCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCe
Q psy13076        230 SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGV  309 (423)
Q Consensus       230 ~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i  309 (423)
                        .- ++.|...+.|.-=... ..+......|.+....++.+|+..++++++.|+.+++|+  ..+++....   -..++
T Consensus       340 --~d-i~vGTtrN~iL~Gt~~-~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~---~~d~~  410 (626)
T KOG2106|consen  340 --GD-ILVGTTRNFILQGTLE-NGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI---IEDPA  410 (626)
T ss_pred             --Cc-EEEeeccceEEEeeec-CCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE---ecCce
Confidence              22 4455544444322221 223445567777888999999999999999999999999  333333221   24567


Q ss_pred             EEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEec
Q psy13076        310 YAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK  389 (423)
Q Consensus       310 ~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~  389 (423)
                      .+++|+|.| .++.|+..|...+.|.++..++..-..+.+  ...+...++|.+++.|+.|+.|++|.+...........
T Consensus       411 ~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~--ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~  487 (626)
T KOG2106|consen  411 ECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQ--LSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG  487 (626)
T ss_pred             eEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCc--eEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence            899999999 999999999999999999877665444333  34566778999999999999999999887666655543


Q ss_pred             -cCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        390 -GHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       390 -~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                       -|..+|+.+.||+|+++|.+-|.|-.|-.|.+.
T Consensus       488 k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  488 KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             eecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence             334789999999999999999999999999653

>KOG0641|consensus

Probab=99.96  E-value=1.3e-25  Score=179.10  Aligned_cols=306  Identities=24%  Similarity=0.306  Sum_probs=219.0

Q ss_pred             ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC-CCCceEEeeCCCCCeEEEecCCeEEEEecCCCccc
Q psy13076         46 HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ-RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS  124 (423)
Q Consensus        46 h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  124 (423)
                      ....|.+++|.|.|.+.+.|+...++||--.-.  ++.....++ ...+      |           .++         -
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~--l~~~r~~hea~~~p------p-----------~v~---------~   82 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPA--LIDLRHAHEAAKQP------P-----------SVL---------C   82 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEcccc--ccCcccccccccCC------C-----------eEE---------e
Confidence            456899999999999999999999999864321  100000000 0000      0           011         1


Q ss_pred             ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee---EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI---LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       125 ~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                      +....|.+.|.+.+|+|.|+.+|+|+.|.+|++-......+.   ...++.-+.+.|++++|-.+..             
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~-------------  149 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE-------------  149 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC-------------
Confidence            123468899999999999999999999999999766533221   1233444556677777653211             


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEE-eCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEE
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG-SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASA  280 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~-s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~  280 (423)
                                                  .+..+++++ ..|-.|++-|....+....+.+|...|.++ ++-+|-++++|
T Consensus       150 ----------------------------s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sg  200 (350)
T KOG0641|consen  150 ----------------------------SGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASG  200 (350)
T ss_pred             ----------------------------cCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEcc
Confidence                                        011112222 224445554544444444566777777765 45568899999


Q ss_pred             EecCeEEEEECCCccceecccccccC-----CCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEE
Q psy13076        281 GFDGKVFLYDGASADLVSELGNPAHK-----GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQV  355 (423)
Q Consensus       281 s~dg~i~vwd~~~~~~~~~~~~~~~~-----~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~  355 (423)
                      +.|.+|+.||++-...+.++...-|.     ..|.+++..|.|++|++|-.|....+||++.+.++..|.. +......+
T Consensus       201 sqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p-hsadir~v  279 (350)
T KOG0641|consen  201 SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP-HSADIRCV  279 (350)
T ss_pred             CCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC-CccceeEE
Confidence            99999999999887777776654443     4588999999999999999999999999999999988743 33445566


Q ss_pred             EEEecCcEEEEEeCCCcEEEEecCC---CCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        356 SCLWQGDYLLTVSLSGFISYLDVNN---PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       356 ~~~~~g~~l~~~~~~~~i~~~~~~~---~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      .++|...++++++.|..|++-|++.   .+.++-....|...+-.+.|+|..--+++.|.|+++.+|-+.
T Consensus       280 rfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  280 RFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            6777889999999999999999874   345566677899999999999999999999999999999765

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.7e-26  Score=217.79  Aligned_cols=248  Identities=17%  Similarity=0.254  Sum_probs=177.5

Q ss_pred             EEEecCCCcccccccCCcceEEEEEECCC-CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEE
Q psy13076        114 IIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV  192 (423)
Q Consensus       114 ~i~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~  192 (423)
                      .+|+.........+.+|...|.+++|+|+ +.+||||+.|++|++||+.+......        .+.             
T Consensus        57 ~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--------~i~-------------  115 (568)
T PTZ00420         57 RLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--------EIK-------------  115 (568)
T ss_pred             EeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--------ccc-------------
Confidence            34443333344567799999999999996 78999999999999999865321100        000             


Q ss_pred             EEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECC
Q psy13076        193 VGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP  272 (423)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~  272 (423)
                                       ..+..+.+|...|.+++|+|.+...+++++.|++|++||........... +...|.+++|+|
T Consensus       116 -----------------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp  177 (568)
T PTZ00420        116 -----------------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI  177 (568)
T ss_pred             -----------------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC
Confidence                             00112335667788889999887777899999999999987765544443 456799999999


Q ss_pred             CCCEEEEEEecCeEEEEECCCccceecccccccCCCeE-----EEEECCCCCeEEEEeCCC----cEEEEecCC-cceee
Q psy13076        273 SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY-----AVAWKPDGTQLLTASGDK----TCKLWDIET-KSAVS  342 (423)
Q Consensus       273 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~-----~l~~~~~~~~l~s~s~d~----~i~iwd~~~-~~~i~  342 (423)
                      +|.+|++++.|+.|++||.++++.+.++.  +|.+.+.     ...|++++.+|++++.|+    +|+|||++. .+.+.
T Consensus       178 dG~lLat~s~D~~IrIwD~Rsg~~i~tl~--gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~  255 (568)
T PTZ00420        178 KGNLLSGTCVGKHMHIIDPRKQEIASSFH--IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV  255 (568)
T ss_pred             CCCEEEEEecCCEEEEEECCCCcEEEEEe--cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE
Confidence            99999999999999999999998877663  5766543     234568999999988774    799999985 44444


Q ss_pred             eeeeCceeEeeEEEEEe---cCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC
Q psy13076        343 EFLMGNQVEDQQVSCLW---QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR  404 (423)
Q Consensus       343 ~~~~~~~~~~~~~~~~~---~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~  404 (423)
                      .+.....  ...+...+   +|..+++|..|+.|++|++..+....-....+..++..++|.|+.
T Consensus       256 ~~~ld~~--~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        256 TMSIDNA--SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEecCC--ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence            4322211  11222222   488899999999999999976532111123467889999999974

>KOG4283|consensus

Probab=99.96  E-value=7.8e-27  Score=192.97  Aligned_cols=320  Identities=21%  Similarity=0.350  Sum_probs=221.8

Q ss_pred             ecccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC
Q psy13076         42 VIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN  120 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  120 (423)
                      ..+-|.+.|++|.+.+ ++++++||+.||.|-+||+++-.-+..     .+             +++..-+ +       
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-----s~-------------li~k~~c-~-------   91 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-----SG-------------LIAKHKC-I-------   91 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh-----cc-------------ceeheee-e-------
Confidence            3456999999999988 689999999999999999986321100     00             0000000 0       


Q ss_pred             CcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCC-eEEEEEcCCc
Q psy13076        121 PAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ-RMVVVGEGRE  198 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~~~~~~~~~~  198 (423)
                       .-...-.+|+..|..+.|-| |.-++.+++.|.++++||..+.+......+   ++.|.+-+|||-.. .-+++...++
T Consensus        92 -v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m---e~~VYshamSp~a~sHcLiA~gtr~  167 (397)
T KOG4283|consen   92 -VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM---EGKVYSHAMSPMAMSHCLIAAGTRD  167 (397)
T ss_pred             -ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec---CceeehhhcChhhhcceEEEEecCC
Confidence             00112357999999999999 677889999999999999987765544443   46788888888532 3333333444


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEE
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFA  278 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~  278 (423)
                      ...++-+...|..-+.+.+|...|..+.|+|...+.+++|+.|+.|++||.+.-                          
T Consensus       168 ~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra--------------------------  221 (397)
T KOG4283|consen  168 VQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA--------------------------  221 (397)
T ss_pred             CcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc--------------------------
Confidence            445666677777778888999999999999999999999999999999985421                          


Q ss_pred             EEEecCeEEEEECCCccceecc-cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCccee-eeeee--CceeEeeE
Q psy13076        279 SAGFDGKVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAV-SEFLM--GNQVEDQQ  354 (423)
Q Consensus       279 s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i-~~~~~--~~~~~~~~  354 (423)
                          .|..++.|...++....+ .+.+|.+.+.+++|..++.+|++++.|..+++|+..+++.. ..+..  .++.....
T Consensus       222 ----sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~  297 (397)
T KOG4283|consen  222 ----SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFA  297 (397)
T ss_pred             ----cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccce
Confidence                012233333332222222 25689999999999999999999999999999998877532 11110  00101111


Q ss_pred             EEE-EecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        355 VSC-LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       355 ~~~-~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      +.. .-+.+.++-.-.++.+.++++-.... +..+.+|-+.|++.++.|+=+...+|..|+.|.-|.+.
T Consensus       298 ~~~~~~~s~vfv~~p~~~~lall~~~sgs~-ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  298 VHIQSMDSDVFVLFPNDGSLALLNLLEGSF-VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             EEEeecccceEEEEecCCeEEEEEccCceE-EEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence            111 11333344444557888888766544 56788999999999999999999999999999999763

>KOG0299|consensus

Probab=99.96  E-value=5.3e-27  Score=204.95  Aligned_cols=300  Identities=22%  Similarity=0.308  Sum_probs=225.6

Q ss_pred             eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec-ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT-LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      +.++..|.-+|.+++++|+..++++++.|++|.-|++.+++.... .+..   ..+..            .+.       
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~---ev~k~------------~~~-------  192 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD---EVLKS------------HGN-------  192 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc---hhhhh------------ccC-------
Confidence            567788999999999999999999999999999999998864422 1110   00000            000       


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                       ..+...  .+|...+.+++.+|||+|||+|+.|..|.||+..+.+++..  +..+.+.|.+++|..             
T Consensus       193 -~~k~~r--~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~-------------  254 (479)
T KOG0299|consen  193 -PLKESR--KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRK-------------  254 (479)
T ss_pred             -CCCccc--ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc--ccccccceeeeeeec-------------
Confidence             001111  37999999999999999999999999999999988776543  334445555555432             


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEE
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFA  278 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~  278 (423)
                                                     . +..+++++.|+.+++|+...+.+..++.+|+..|..+.....++.+.
T Consensus       255 -------------------------------g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vt  302 (479)
T KOG0299|consen  255 -------------------------------G-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVT  302 (479)
T ss_pred             -------------------------------C-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEE
Confidence                                           1 12378899999999999888888888899999999998888888898


Q ss_pred             EEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCcee--------
Q psy13076        279 SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQV--------  350 (423)
Q Consensus       279 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~--------  350 (423)
                      +|+.|+++++|++....   ++...+|.+.+.|++|-. ...|++||++|.|-+|++..++.+......++.        
T Consensus       303 VGgrDrT~rlwKi~ees---qlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~  378 (479)
T KOG0299|consen  303 VGGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN  378 (479)
T ss_pred             eccccceeEEEeccccc---eeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence            89999999999984433   223346788999999964 567899999999999999988887665433321        


Q ss_pred             ---EeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCce---EEeccCCCceeEEEecCCCCeEEEe-cCCCcE
Q psy13076        351 ---EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI---RVIKGHNKPITALALSPDRGTVFTG-SHDGFI  416 (423)
Q Consensus       351 ---~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~h~~~v~~i~~sp~~~~l~s~-s~D~~i  416 (423)
                         -...+++.+..+.+++|+.+|.+++|-+.++..++   ..+. -.+.|++++|+++++.|++| |..-.+
T Consensus       379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRl  450 (479)
T KOG0299|consen  379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRL  450 (479)
T ss_pred             cccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccc
Confidence               23456667788899999999999999998874333   3333 56789999999999966554 554444

>KOG0268|consensus

Probab=99.96  E-value=2.4e-28  Score=207.22  Aligned_cols=273  Identities=17%  Similarity=0.300  Sum_probs=201.1

Q ss_pred             eeeEEEEe-CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc
Q psy13076          8 QQVSCLWQ-GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP   86 (423)
Q Consensus         8 ~~~~~~~~-~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~   86 (423)
                      ||+|=+|. =..+|+||.||.|++||+.. ..++.+|++|.+.|..|.+..  .-++|+|.|.+||.|..+.. ..+++ 
T Consensus        70 ~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~ti-  144 (433)
T KOG0268|consen   70 SCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTI-  144 (433)
T ss_pred             chhhcCcchhhhhhccccCceEEEEehhh-hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceee-
Confidence            45555562 36789999999999999975 677889999999999999987  56889999999999987652 22221 


Q ss_pred             CCCCCCceEEeeCC-CCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC-CCEEEEEccCCcEEEEEcCCCc
Q psy13076         87 RTQRGQPIVLGGDP-KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKE  164 (423)
Q Consensus        87 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~  164 (423)
                         .+.....+-+. .......++|..+-|||.+-......+.--...|.++.|+|- -.+|++|.+|+.|.|||+....
T Consensus       145 ---lg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~  221 (433)
T KOG0268|consen  145 ---LGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS  221 (433)
T ss_pred             ---eccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC
Confidence               12222222221 223344567888999998766666666666778999999995 4577888899999999998766


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI  244 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i  244 (423)
                      ++.+....   ..-+.|+|+|                                             ..+.+++|+.|..+
T Consensus       222 Pl~KVi~~---mRTN~IswnP---------------------------------------------eafnF~~a~ED~nl  253 (433)
T KOG0268|consen  222 PLKKVILT---MRTNTICWNP---------------------------------------------EAFNFVAANEDHNL  253 (433)
T ss_pred             ccceeeee---ccccceecCc---------------------------------------------cccceeeccccccc
Confidence            54332211   2233445554                                             33457788899999


Q ss_pred             EEEcCCCcee-eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEE
Q psy13076        245 AVFEGPPFKF-KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT  323 (423)
Q Consensus       245 ~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s  323 (423)
                      +.||.+.... .....+|...|..++|||.|+-+++||+|.+|+||....+......- ......|.++.|+-|.+++++
T Consensus       254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh-tkRMq~V~~Vk~S~Dskyi~S  332 (433)
T KOG0268|consen  254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH-TKRMQHVFCVKYSMDSKYIIS  332 (433)
T ss_pred             eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh-HhhhheeeEEEEeccccEEEe
Confidence            9999765432 33456788899999999999999999999999999987655322211 112356899999999999999


Q ss_pred             EeCCCcEEEEecCC
Q psy13076        324 ASGDKTCKLWDIET  337 (423)
Q Consensus       324 ~s~d~~i~iwd~~~  337 (423)
                      ||+|+.||+|-..-
T Consensus       333 GSdd~nvRlWka~A  346 (433)
T KOG0268|consen  333 GSDDGNVRLWKAKA  346 (433)
T ss_pred             cCCCcceeeeecch
Confidence            99999999997653

>KOG1332|consensus

Probab=99.96  E-value=2.2e-27  Score=191.23  Aligned_cols=253  Identities=23%  Similarity=0.373  Sum_probs=189.7

Q ss_pred             EEEeCCEEEEEeccceEEEEeccCCC--CceeecccccCceeEEEEeC--CCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076         12 CLWQGDYLLTVSLSGFISYLDVNNPS--TPIRVIKGHNKPITALALSP--DRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus        12 ~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~~~gh~~~V~~l~~~~--~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      ++|=|+.||+|+.|+.|+++.++++.  +++-.|+||.+||..++|..  .|.+|||++.||.|.||.-++++-.     
T Consensus        19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~-----   93 (299)
T KOG1332|consen   19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT-----   93 (299)
T ss_pred             hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh-----
Confidence            34459999999999999999998655  57778999999999999965  7999999999999999988765210     


Q ss_pred             CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCC-c
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNK-E  164 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~-~  164 (423)
                                                         -...+..|...|++++|.|.  |-.||+++.||.|.|.+.+.. .
T Consensus        94 -----------------------------------k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~  138 (299)
T KOG1332|consen   94 -----------------------------------KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG  138 (299)
T ss_pred             -----------------------------------hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence                                               11245679999999999994  779999999999999987654 2


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI  244 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i  244 (423)
                      .........+.-.|++++|.|....=..+.                       +. +.       ....+|++|+.|+.+
T Consensus       139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~-----------------------~~-~~-------~~~krlvSgGcDn~V  187 (299)
T KOG1332|consen  139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVD-----------------------QG-PA-------AKVKRLVSGGCDNLV  187 (299)
T ss_pred             ccchhhhhccccccceeeecCcCCCccccc-----------------------cC-cc-------cccceeeccCCccce
Confidence            222223334556689999998521100000                       00 00       112469999999999


Q ss_pred             EEEcCCC--ceeeeeccccccCeEEEEECCCC----CEEEEEEecCeEEEEECCCc-cc-eecccccccCCCeEEEEECC
Q psy13076        245 AVFEGPP--FKFKMTKQEHSRFVQAVRYSPSG----SHFASAGFDGKVFLYDGASA-DL-VSELGNPAHKGGVYAVAWKP  316 (423)
Q Consensus       245 ~~~~~~~--~~~~~~~~~~~~~i~~l~~s~~g----~~l~s~s~dg~i~vwd~~~~-~~-~~~~~~~~~~~~i~~l~~~~  316 (423)
                      ++|+...  ++...++..|.++|+.++|.|.-    .++|++|.||++.||..... +. ..++. ......++.++|++
T Consensus       188 kiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~  266 (299)
T KOG1332|consen  188 KIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSL  266 (299)
T ss_pred             eeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEec
Confidence            9997543  34555688999999999999974    47999999999999976521 11 11111 12356789999999


Q ss_pred             CCCeEEEEeCCCcEEEEecC
Q psy13076        317 DGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       317 ~~~~l~s~s~d~~i~iwd~~  336 (423)
                      .|+.|+.++.|+.|.+|--.
T Consensus       267 sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  267 SGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cccEEEEecCCcEEEEEEeC
Confidence            99999999999999999643

>KOG0640|consensus

Probab=99.96  E-value=2.5e-27  Score=197.22  Aligned_cols=281  Identities=16%  Similarity=0.254  Sum_probs=202.0

Q ss_pred             eEEEEeCCEEEEEeccceEEEEecc------CC----------C-CceeecccccCceeEEEEeCCCCeEEEecCCCceE
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVN------NP----------S-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFIT   72 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~------~~----------~-~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~   72 (423)
                      -++++||.++|+||.|-+|.++|+.      .+          . -.+++|-.|.++|++|.|+|...+|+||+.|++||
T Consensus       118 aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvK  197 (430)
T KOG0640|consen  118 AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVK  197 (430)
T ss_pred             eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEE
Confidence            3567799999999999999999985      11          1 12456778999999999999999999999999999


Q ss_pred             EeecCCcceeecccCC-CCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCccc---ccccCCcceEEEEEECCCCCEEE
Q psy13076         73 RWNAKTEYIFATLPRT-QRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAIS---DIYTEHSCAVNVAKYSPSGFYIA  147 (423)
Q Consensus        73 vW~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~---~~~~~h~~~i~~~~~sp~~~~l~  147 (423)
                      ++|+......+-+... .......++++|.|..++.. ....++++|+++-.+-   .--.+|+..|+++.|++.+++-+
T Consensus       198 lFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYv  277 (430)
T KOG0640|consen  198 LFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYV  277 (430)
T ss_pred             EEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEE
Confidence            9998754322222211 22334568999999887765 4678899998764432   12358999999999999999999


Q ss_pred             EEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEE
Q psy13076        148 SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF  227 (423)
Q Consensus       148 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  227 (423)
                      +++.||.||+||--+..++.......-+.+|.+..|..+++++++                                   
T Consensus       278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs-----------------------------------  322 (430)
T KOG0640|consen  278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS-----------------------------------  322 (430)
T ss_pred             EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee-----------------------------------
Confidence            999999999999776665543322222456677777777766554                                   


Q ss_pred             ecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc-----cccCeEEEEECCCCCEEEEEEe-cCeEEEEECCCccceeccc
Q psy13076        228 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-----HSRFVQAVRYSPSGSHFASAGF-DGKVFLYDGASADLVSELG  301 (423)
Q Consensus       228 ~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~-----~~~~i~~l~~s~~g~~l~s~s~-dg~i~vwd~~~~~~~~~~~  301 (423)
                                .+.|..+++|+.........+.+     ....-+...|+....|++.-.. .+.+.-||.+++.....+.
T Consensus       323 ----------SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s  392 (430)
T KOG0640|consen  323 ----------SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS  392 (430)
T ss_pred             ----------cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc
Confidence                      34455555555443333222211     1111233456666666655443 5678999999887665555


Q ss_pred             ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        302 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       302 ~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                       .+|++.+..+.-+|.+.-+++||.|..+|+|--+
T Consensus       393 -lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  393 -LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             -cCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence             3799999999999999999999999999999543

>KOG1408|consensus

Probab=99.96  E-value=1.9e-26  Score=211.31  Aligned_cols=358  Identities=20%  Similarity=0.235  Sum_probs=251.9

Q ss_pred             eeeEEEEe--CCEEEEEeccceEEEEeccCCCCc--eeecccccCceeEEEEeC------C-----CCeEEEecCCCceE
Q psy13076          8 QQVSCLWQ--GDYLLTVSLSGFISYLDVNNPSTP--IRVIKGHNKPITALALSP------D-----RGTVFTGSHDGFIT   72 (423)
Q Consensus         8 ~~~~~~~~--~~~~~~~~~dg~i~~~d~~~~~~~--~~~~~gh~~~V~~l~~~~------~-----~~~l~sg~~D~~i~   72 (423)
                      -+|||.+|  ..+|.+.=.|++|.+||++.+.++  .+.+--|..-|..+.--|      .     ..-++|+++|++||
T Consensus       326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR  405 (1080)
T KOG1408|consen  326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR  405 (1080)
T ss_pred             ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence            47899985  788988899999999999877664  334556777777665543      0     12378999999999


Q ss_pred             EeecCCc---ceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccc---ccccCCcceEEEEEECCCCCEE
Q psy13076         73 RWNAKTE---YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS---DIYTEHSCAVNVAKYSPSGFYI  146 (423)
Q Consensus        73 vW~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~h~~~i~~~~~sp~~~~l  146 (423)
                      +||++.+   .+++.-       .+    +.+-....+.+++.-.+.+.+.+-..   ...-+....+.+++.+|+|++|
T Consensus       406 lW~l~~ctnn~vyrRN-------il----s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL  474 (1080)
T KOG1408|consen  406 LWDLAFCTNNQVYRRN-------IL----SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL  474 (1080)
T ss_pred             Eeecccccccceeecc-------cc----hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence            9999862   121110       00    00001112222222223332222111   1122345679999999999999


Q ss_pred             EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC-CCCeEEEEEcCCceeeEEEeecCCc-ceecccCCCcceeE
Q psy13076        147 ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGT-SVGEISGQSKPINS  224 (423)
Q Consensus       147 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~  224 (423)
                      |+|+.-|++|||++.+.+....  ...+..+|.++.|+. +-..=+.+++++++..|+++..... .+..+.+|...|++
T Consensus       475 AsGDr~GnlrVy~Lq~l~~~~~--~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs  552 (1080)
T KOG1408|consen  475 ASGDRGGNLRVYDLQELEYTCF--MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS  552 (1080)
T ss_pred             cccCccCceEEEEehhhhhhhh--eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence            9999999999999977655443  334568899999984 3222233345677788888876544 45778899999999


Q ss_pred             EEEecCC-CeeEEEEeCCCeEEEEcCCC---c-ee-eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcccee
Q psy13076        225 CDFKPSR-PFRIITGSEDNTIAVFEGPP---F-KF-KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS  298 (423)
Q Consensus       225 ~~~~~~~-~~~~~s~s~d~~i~~~~~~~---~-~~-~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~  298 (423)
                      +.|.-.+ ++.+++++.|+.|..=....   . .+ ..+.......+..+++.|.-++++++..|..|+||+..+++..+
T Consensus       553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k  632 (1080)
T KOG1408|consen  553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK  632 (1080)
T ss_pred             EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence            9998765 67789999998764322110   0 00 00111123457789999999999999999999999999999888


Q ss_pred             cccc-cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEe
Q psy13076        299 ELGN-PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLD  377 (423)
Q Consensus       299 ~~~~-~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~  377 (423)
                      .+.. ..|.+....+..+|.|.||++.+.|+++.++|+.+++++..+..+ ......+.+..+-+.|++++.||.|.+|.
T Consensus       633 ~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  633 SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH-SEAVTGVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc-chheeeeeecccchhheeecCCceEEEEE
Confidence            7753 346677888999999999999999999999999999999877533 23344456677889999999999999998


Q ss_pred             cC
Q psy13076        378 VN  379 (423)
Q Consensus       378 ~~  379 (423)
                      +.
T Consensus       712 lp  713 (1080)
T KOG1408|consen  712 LP  713 (1080)
T ss_pred             Cc
Confidence            75

>KOG2096|consensus

Probab=99.96  E-value=5.5e-26  Score=189.92  Aligned_cols=285  Identities=20%  Similarity=0.298  Sum_probs=207.1

Q ss_pred             eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCccee-ecc--cCCCCCCceEEeeCCCCCeEEEe--cCCeEEE
Q psy13076         41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIF-ATL--PRTQRGQPIVLGGDPKGKNFLYT--NGNSVII  115 (423)
Q Consensus        41 ~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i  115 (423)
                      .+|+||.+.|++++|+.||+.|+|++.|++||+|++...... +..  ..-..+.+..+.+.|+++-+++.  .++.+.+
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            468999999999999999999999999999999998753110 000  11123567788999999877764  5778888


Q ss_pred             EecC---CCccc---------ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEE
Q psy13076        116 RNIE---NPAIS---------DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW  183 (423)
Q Consensus       116 ~~~~---~~~~~---------~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~  183 (423)
                      +.+.   ++...         ..-..|+-.|..+-....+++++|++.|.+|.+|+++ ++.+....-..  ..-...+.
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq--~~n~~aav  236 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ--SSNYDAAV  236 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc--ccccceee
Confidence            7653   22221         1234567777778888899999999999999999997 44333222211  22356789


Q ss_pred             CCCCCeEEEEEcCCceeeEEEeec---CC-----cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-c--
Q psy13076        184 SPDNQRMVVVGEGRERFGHVFMSE---TG-----TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-F--  252 (423)
Q Consensus       184 s~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-~--  252 (423)
                      ||+|+++++++...+.  .+|...   .|     .....+++|.+.+...+|+++.. ++++.|.||.+++||..- +  
T Consensus       237 SP~GRFia~~gFTpDV--kVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDV--KVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             CCCCcEEEEecCCCCc--eEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEec
Confidence            9999999998865543  233221   12     24567899999999999999875 599999999999998531 1  


Q ss_pred             ----eeee----eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEE
Q psy13076        253 ----KFKM----TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA  324 (423)
Q Consensus       253 ----~~~~----~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~  324 (423)
                          +...    .+..-......|..+|.|+.||.+ ....+.++..++++...++. ..|.+.|.+++|+++|++++|+
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e-~~h~~~Is~is~~~~g~~~atc  391 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELE-DIHSTTISSISYSSDGKYIATC  391 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHH-HhhcCceeeEEecCCCcEEeee
Confidence                1111    111122234479999999988754 45679999999988776665 4799999999999999999997


Q ss_pred             eCCCcEEEEe
Q psy13076        325 SGDKTCKLWD  334 (423)
Q Consensus       325 s~d~~i~iwd  334 (423)
                      + |+.++++.
T Consensus       392 G-dr~vrv~~  400 (420)
T KOG2096|consen  392 G-DRYVRVIR  400 (420)
T ss_pred             c-ceeeeeec
Confidence            6 67888875

>KOG0308|consensus

Probab=99.96  E-value=4.6e-27  Score=213.30  Aligned_cols=342  Identities=23%  Similarity=0.318  Sum_probs=251.0

Q ss_pred             eCCEEEEEeccceEEEEeccCCC----Cc-eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPS----TP-IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~----~~-~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      -++||++|++||.|++|+.....    .+ +..++.|.+-|+.++...+++.|+|+|+|-+|++|+...+          
T Consensus        36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~----------  105 (735)
T KOG0308|consen   36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKD----------  105 (735)
T ss_pred             CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccC----------
Confidence            37899999999999999875322    22 5678999999999999999999999999999999998642          


Q ss_pred             CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEE-CCCCCEEEEEccCCcEEEEEcCCCce---
Q psy13076         90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKY-SPSGFYIASGDISGKVRIWDTVNKEH---  165 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~-sp~~~~l~s~~~d~~i~vwd~~~~~~---  165 (423)
                                                    +..+..++..|+.-|.++++ .++...+|||+-|+.|.+||+..+..   
T Consensus       106 ------------------------------~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~  155 (735)
T KOG0308|consen  106 ------------------------------NTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV  155 (735)
T ss_pred             ------------------------------cchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh
Confidence                                          01234567789999999999 78999999999999999999986522   


Q ss_pred             -----eEEeeec-CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe
Q psy13076        166 -----ILKNEFH-PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS  239 (423)
Q Consensus       166 -----~~~~~~~-~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s  239 (423)
                           ....... +...+|.+++.++.|-  +.++++-++..++|+..+++.+..+.+|...|..+..++++.. ++++|
T Consensus       156 ~s~n~~t~~sl~sG~k~siYSLA~N~t~t--~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~-~ls~s  232 (735)
T KOG0308|consen  156 ASFNNVTVNSLGSGPKDSIYSLAMNQTGT--IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTR-LLSAS  232 (735)
T ss_pred             hhccccccccCCCCCccceeeeecCCcce--EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCe-EeecC
Confidence                 1111122 4456789999999883  3334445566789999999999999999999999999999874 89999


Q ss_pred             CCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC
Q psy13076        240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT  319 (423)
Q Consensus       240 ~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~  319 (423)
                      .|++|++|+....++..++..|.+.+.++..+|+-.++.+|+.||.|..=|+++......+-.  ....+..+..+...+
T Consensus       233 SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick--~daPv~~l~~~~~~~  310 (735)
T KOG0308|consen  233 SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK--EDAPVLKLHLHEHDN  310 (735)
T ss_pred             CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec--CCCchhhhhhccccC
Confidence            999999999999999999999999999999999999999999999999888877432211111  123455566654444


Q ss_pred             eEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEE
Q psy13076        320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA  399 (423)
Q Consensus       320 ~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~  399 (423)
                      .+=+++.|+.|+-|-..-.-.                ....|+... -+.+......+...  .|..+..| ..+|...+
T Consensus       311 ~~WvtTtds~I~rW~~~~~~~----------------l~~s~~~~~-~~T~~~~~~~~~~~--tp~~vi~G-g~ai~k~~  370 (735)
T KOG0308|consen  311 SVWVTTTDSSIKRWKLEPDIA----------------LSVSGDLDF-FSTDSNNHSCDLTN--TPDSVIPG-GAAIKKHA  370 (735)
T ss_pred             CceeeeccccceecCCccccc----------------cccCCCCCc-ccccCCCccccccC--CCceeccC-chhhhhhh
Confidence            445567899999997543211                111222222 12222222222211  11222232 23466666


Q ss_pred             ecCCCCeEEEecCCCcEEEeeC
Q psy13076        400 LSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       400 ~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      .--|.++++|-..+|.+.+||+
T Consensus       371 mL~dkRhVlTkDa~gnv~lwDI  392 (735)
T KOG0308|consen  371 MLNDKRHVLTKDAKGNVALWDI  392 (735)
T ss_pred             hhcCcceEeeecCCCCEEEEEe
Confidence            6678899999999999999996

>KOG0647|consensus

Probab=99.95  E-value=3.6e-26  Score=189.71  Aligned_cols=238  Identities=18%  Similarity=0.290  Sum_probs=171.0

Q ss_pred             eeeEEEE-eCCEEEEEeccceEEEEeccCC-CCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076          8 QQVSCLW-QGDYLLTVSLSGFISYLDVNNP-STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus         8 ~~~~~~~-~~~~~~~~~~dg~i~~~d~~~~-~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      ..++++| ++.+++++|=||.||+|++.+. ....+....|.+||.+++|+.||..+++|+.|+.+++||++++...   
T Consensus        31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~---  107 (347)
T KOG0647|consen   31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS---  107 (347)
T ss_pred             heeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee---
Confidence            3578888 5666769999999999999863 3333567789999999999999999999999999999999886331   


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCC--EEEEEccCCcEEEEEcCCC
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF--YIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l~s~~~d~~i~vwd~~~~  163 (423)
                                                              ....|..+|..++|-+...  .|+|||.|.+||.||.+..
T Consensus       108 ----------------------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~  147 (347)
T KOG0647|consen  108 ----------------------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS  147 (347)
T ss_pred             ----------------------------------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence                                                    1234888898998877554  8999999999999999876


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT  243 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~  243 (423)
                      ..+....+.   +++.++..-                                              .+ +++.+..++.
T Consensus       148 ~pv~t~~LP---eRvYa~Dv~----------------------------------------------~p-m~vVata~r~  177 (347)
T KOG0647|consen  148 NPVATLQLP---ERVYAADVL----------------------------------------------YP-MAVVATAERH  177 (347)
T ss_pred             Ceeeeeecc---ceeeehhcc----------------------------------------------Cc-eeEEEecCCc
Confidence            655433322   222221110                                              01 3555666777


Q ss_pred             EEEEcCCCce--eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccC---------CCeEEE
Q psy13076        244 IAVFEGPPFK--FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHK---------GGVYAV  312 (423)
Q Consensus       244 i~~~~~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------~~i~~l  312 (423)
                      |.+|.+....  .+......+-.+++++.-+|.+..+.|+-+|.+.+..+..+.....+...-|.         -.|.++
T Consensus       178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi  257 (347)
T KOG0647|consen  178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI  257 (347)
T ss_pred             EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence            8888763221  11111223345788988888888899999999999887765332222222232         146789


Q ss_pred             EECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        313 AWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       313 ~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      +|+|.-..|+|++.||++.+||-...
T Consensus       258 ~FhP~hgtlvTaGsDGtf~FWDkdar  283 (347)
T KOG0647|consen  258 AFHPVHGTLVTAGSDGTFSFWDKDAR  283 (347)
T ss_pred             EeecccceEEEecCCceEEEecchhh
Confidence            99999999999999999999996543

>KOG0310|consensus

Probab=99.95  E-value=2.8e-26  Score=201.92  Aligned_cols=233  Identities=21%  Similarity=0.371  Sum_probs=183.7

Q ss_pred             EEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076         11 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        11 ~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      .+..||+++|+|...|.|+++|. +++..+..+.+|+.||....|+|++ .++++|+.|+.+++||+.+..+.       
T Consensus        75 ~fR~DG~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~-------  146 (487)
T KOG0310|consen   75 DFRSDGRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ-------  146 (487)
T ss_pred             EeecCCeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE-------
Confidence            34449999999999999999994 3455677899999999999999965 57888999999999999875421       


Q ss_pred             CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                                                         ..+.+|++-|.+.+++| ++.+++||++||+||+||.+.... ..
T Consensus       147 -----------------------------------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v  190 (487)
T KOG0310|consen  147 -----------------------------------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-RV  190 (487)
T ss_pred             -----------------------------------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-ee
Confidence                                               13568999999999999 456889999999999999987632 11


Q ss_pred             eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076        169 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE  248 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~  248 (423)
                      .+ ..++.||.++.+-|.|..+++++                                              .+.+++||
T Consensus       191 ~e-lnhg~pVe~vl~lpsgs~iasAg----------------------------------------------Gn~vkVWD  223 (487)
T KOG0310|consen  191 VE-LNHGCPVESVLALPSGSLIASAG----------------------------------------------GNSVKVWD  223 (487)
T ss_pred             EE-ecCCCceeeEEEcCCCCEEEEcC----------------------------------------------CCeEEEEE
Confidence            22 23467777777777766554432                                              34577887


Q ss_pred             CCC-ceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        249 GPP-FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       249 ~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      ... .+.......|...|+|+++..++..|++|+-|+.+++||..+.+.+..+.   ..++|.+++.+|+++.++.|..|
T Consensus       224 l~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~---~~~pvLsiavs~dd~t~viGmsn  300 (487)
T KOG0310|consen  224 LTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK---YPGPVLSIAVSPDDQTVVIGMSN  300 (487)
T ss_pred             ecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee---cccceeeEEecCCCceEEEeccc
Confidence            653 33333344588899999999999999999999999999988888887775   46789999999999999999999


Q ss_pred             CcEEEEecCC
Q psy13076        328 KTCKLWDIET  337 (423)
Q Consensus       328 ~~i~iwd~~~  337 (423)
                      |.+.+=+...
T Consensus       301 Glv~~rr~~~  310 (487)
T KOG0310|consen  301 GLVSIRRREV  310 (487)
T ss_pred             ceeeeehhhc
Confidence            9887764433

>KOG1446|consensus

Probab=99.95  E-value=4.4e-25  Score=184.79  Aligned_cols=247  Identities=21%  Similarity=0.335  Sum_probs=189.2

Q ss_pred             ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       125 ~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      +.|..-.+.|+++.|+++|.++++++.|.+++|||..++++......+.  -.+..+.|-.....               
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk--yG~~~~~Fth~~~~---------------   70 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK--YGVDLACFTHHSNT---------------   70 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc--ccccEEEEecCCce---------------
Confidence            3455566789999999999999999999999999998887664433221  12333333322211               


Q ss_pred             eecCCcceecccCCCcceeEEEEecCCCeeEEEEe--CCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe
Q psy13076        205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS--EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF  282 (423)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s--~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~  282 (423)
                                                    ++.++  .|.+|+..+....++.+.+.+|...|++++.+|-+..+++++.
T Consensus        71 ------------------------------~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~  120 (311)
T KOG1446|consen   71 ------------------------------VIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL  120 (311)
T ss_pred             ------------------------------EEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEeccc
Confidence                                          22222  3677888887778888889999999999999999999999999


Q ss_pred             cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc--ceeeeeeeC--ceeEeeEEEEE
Q psy13076        283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK--SAVSEFLMG--NQVEDQQVSCL  358 (423)
Q Consensus       283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~--~~i~~~~~~--~~~~~~~~~~~  358 (423)
                      |++|++||++..++...+    +...-..+||+|.|-++|++.....|++||+++.  ....++...  ...+...+.++
T Consensus       121 D~tvrLWDlR~~~cqg~l----~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS  196 (311)
T KOG1446|consen  121 DKTVRLWDLRVKKCQGLL----NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS  196 (311)
T ss_pred             CCeEEeeEecCCCCceEE----ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEc
Confidence            999999999976654433    2233456899999999999988889999999874  223444332  34556677888


Q ss_pred             ecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCce---eEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPI---TALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       359 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v---~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      ++|++++..+..+.+++.|.-++. ....+.+|...-   .+.+|+||++++++|+.||+|.+|+++|
T Consensus       197 ~dGK~iLlsT~~s~~~~lDAf~G~-~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  197 PDGKSILLSTNASFIYLLDAFDGT-VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             CCCCEEEEEeCCCcEEEEEccCCc-EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence            999999999999999999998865 345555555443   6889999999999999999999999875

>KOG0641|consensus

Probab=99.95  E-value=1.1e-24  Score=173.76  Aligned_cols=292  Identities=24%  Similarity=0.317  Sum_probs=209.6

Q ss_pred             Cccccee----eEEEEeCCEEEEEeccceEEEE------ecc----CCCCcee----ecccccCceeEEEEeCCCCeEEE
Q psy13076          3 NQVEDQQ----VSCLWQGDYLLTVSLSGFISYL------DVN----NPSTPIR----VIKGHNKPITALALSPDRGTVFT   64 (423)
Q Consensus         3 ~~~~~~~----~~~~~~~~~~~~~~~dg~i~~~------d~~----~~~~~~~----~~~gh~~~V~~l~~~~~~~~l~s   64 (423)
                      |.+||-|    |+++|.|++.|.+|...++|+-      |++    ++.+|..    .-+-|++.|-|.+|+|.|+++++
T Consensus        27 ~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat  106 (350)
T KOG0641|consen   27 NILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT  106 (350)
T ss_pred             EEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence            3455544    7889999999999999999875      332    2334422    23568999999999999999999


Q ss_pred             ecCCCceEEeecCCcceeec---cc-CCCCC--CceEEeeCC-CCCeEEEec---CCeEEEEecCCCcccccccCCcceE
Q psy13076         65 GSHDGFITRWNAKTEYIFAT---LP-RTQRG--QPIVLGGDP-KGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAV  134 (423)
Q Consensus        65 g~~D~~i~vW~~~~~~~~~~---~~-~~~~~--~~~~~~~~~-~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~h~~~i  134 (423)
                      |+.|.+|++--++...+-..   +. ..+.+  ..+++..+| .+..++.+.   +..+.+.+-..+...+.+.||++-|
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi  186 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI  186 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence            99999999976654221111   00 00111  233333333 444444432   3456677777788888999999988


Q ss_pred             EEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceec
Q psy13076        135 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE  214 (423)
Q Consensus       135 ~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (423)
                      .++ |+-+|-.+++|+.|.+||.||++-..++....-          .|...|                           
T Consensus       187 lal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~----------~~~~~g---------------------------  228 (350)
T KOG0641|consen  187 LAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN----------DFHDGG---------------------------  228 (350)
T ss_pred             EEE-EEecCcEEEccCCCceEEEEeeeccceeeeccC----------cccCCC---------------------------
Confidence            776 666899999999999999999864433221100          011000                           


Q ss_pred             ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCc
Q psy13076        215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA  294 (423)
Q Consensus       215 ~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~  294 (423)
                        ...+.+..++..|.+.. +++|-.|....+||.+.......+..|...|.++.|+|...|++++++|..|++=|+. +
T Consensus       229 --lessavaav~vdpsgrl-l~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-g  304 (350)
T KOG0641|consen  229 --LESSAVAAVAVDPSGRL-LASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-G  304 (350)
T ss_pred             --cccceeEEEEECCCcce-eeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-c
Confidence              01234666777777764 7888899999999999888888888999999999999999999999999999999875 3


Q ss_pred             cceeccc---ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        295 DLVSELG---NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       295 ~~~~~~~---~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      .+..++.   ...|+..+..+.|+|..-.+++.+.|+++.+|-+.
T Consensus       305 dla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  305 DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             chhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            3322222   23588888889999999889999999999999763

>KOG2048|consensus

Probab=99.95  E-value=4.7e-23  Score=188.37  Aligned_cols=404  Identities=17%  Similarity=0.226  Sum_probs=276.7

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccc-cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH-NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh-~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      +|.+-+.+.||.+=.||.|.+|++++......++.|+ ++.|.+|+|+ ++..|+|.+-+|+|.-||+.+.+.++.....
T Consensus        31 lA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~  109 (691)
T KOG2048|consen   31 LAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN  109 (691)
T ss_pred             EEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCC
Confidence            4555578889998999999999999888888889886 5679999999 4567889999999999999998877665432


Q ss_pred             CCCCceEEeeCCCCCeEEEecC-CeEEEEecCCCccc--ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNG-NSVIIRNIENPAIS--DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~--~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                       .+..=.++-+|.+..++..++ ..+.......+++.  ..|...++.|.++.|+|++..+++|+.||.|++||..++..
T Consensus       110 -gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t  188 (691)
T KOG2048|consen  110 -GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT  188 (691)
T ss_pred             -CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence             222223555666666665543 33344444444433  34556679999999999999999999999999999988765


Q ss_pred             eEEe--eecCC----CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe
Q psy13076        166 ILKN--EFHPI----GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS  239 (423)
Q Consensus       166 ~~~~--~~~~~----~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s  239 (423)
                      ....  +....    +.-|.++.|-.++.  ++++++. .....|+.+.++.+...+-|...|.+++.+++.+. +.+++
T Consensus       189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t--I~sgDS~-G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~-vfsaG  264 (691)
T KOG2048|consen  189 LHIITMQLDRLSKREPTIVWSVLFLRDST--IASGDSA-GTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR-VFSAG  264 (691)
T ss_pred             EEEeeecccccccCCceEEEEEEEeecCc--EEEecCC-ceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe-EEEcc
Confidence            5421  12221    22355677765553  4444443 34678999999999999999999999999998775 77888


Q ss_pred             CCCeEEEEcCCCc----eeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCC----------------------
Q psy13076        240 EDNTIAVFEGPPF----KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS----------------------  293 (423)
Q Consensus       240 ~d~~i~~~~~~~~----~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~----------------------  293 (423)
                      .|+.+..|...+.    ........|...+.+++..++  .+.+|+.|..+.+-....                      
T Consensus       265 vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~  342 (691)
T KOG2048|consen  265 VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP  342 (691)
T ss_pred             CCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc
Confidence            8988887764433    223344567778888888776  778888887765432111                      


Q ss_pred             --------------------c----c----ceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeee
Q psy13076        294 --------------------A----D----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       294 --------------------~----~----~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~  345 (423)
                                          .    +    .+..+.. .....|.+.+.+|+|++++-+.- ...+||.++.-..++...
T Consensus       343 ~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~-k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~  420 (691)
T KOG2048|consen  343 ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFT-KEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVIN  420 (691)
T ss_pred             cceEEEEeccccccceeccCcccccccChhhheeeec-CCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEE
Confidence                                0    0    0000000 11235888999999999988764 458888887643333322


Q ss_pred             eCc----eeEeeEEEEEecCcEEEEEe-CCCcEEEEecCCCCCc-eEE--eccCCCceeEEEecCCCCeEEEecCCCcEE
Q psy13076        346 MGN----QVEDQQVSCLWQGDYLLTVS-LSGFISYLDVNNPSTP-IRV--IKGHNKPITALALSPDRGTVFTGSHDGFIT  417 (423)
Q Consensus       346 ~~~----~~~~~~~~~~~~g~~l~~~~-~~~~i~~~~~~~~~~~-~~~--~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~  417 (423)
                      ...    ......+.+.-++..++.++ ....+..++..++... ++.  ..+-...|..+..||+|+||+..+.++.|.
T Consensus       421 v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~  500 (691)
T KOG2048|consen  421 VDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIF  500 (691)
T ss_pred             eccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEE
Confidence            111    11122334444666666666 5666777766554321 111  123456799999999999999999999999


Q ss_pred             EeeCCC
Q psy13076        418 RWNAKT  423 (423)
Q Consensus       418 ~W~~~~  423 (423)
                      +|++++
T Consensus       501 v~nl~~  506 (691)
T KOG2048|consen  501 VYNLET  506 (691)
T ss_pred             EEEccc
Confidence            999875

>KOG2445|consensus

Probab=99.95  E-value=3.5e-25  Score=184.29  Aligned_cols=275  Identities=18%  Similarity=0.339  Sum_probs=185.7

Q ss_pred             ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc
Q psy13076         44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI  123 (423)
Q Consensus        44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  123 (423)
                      .+|.+-|.++.|.+-|+.+|||+.|++|+|||++...                     |                 +-.+
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s---------------------~-----------------~W~~   51 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS---------------------G-----------------TWSC   51 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC---------------------C-----------------ceEE
Confidence            5799999999999999999999999999999975321                     1                 1112


Q ss_pred             cccccCCcceEEEEEECC--CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        124 SDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       124 ~~~~~~h~~~i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                      ....+.|.+.|..+.|.+  -|+.+|+++.|++++||+-.....      ..++            +             
T Consensus        52 Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~------~~~~------------~-------------  100 (361)
T KOG2445|consen   52 TSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE------EAHG------------R-------------  100 (361)
T ss_pred             eeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc------cccc------------c-------------
Confidence            233456889999999876  499999999999999998532110      0000            0             


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCC-CeeEEEEeCCCeEEEEcCCCce------eee-------eccccccCeEE
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSR-PFRIITGSEDNTIAVFEGPPFK------FKM-------TKQEHSRFVQA  267 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~s~d~~i~~~~~~~~~------~~~-------~~~~~~~~i~~  267 (423)
                       -|     .....+......++.+.|.|.. ...+++++.||++++|+.+...      +..       +...+...-.|
T Consensus       101 -~W-----v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C  174 (361)
T KOG2445|consen  101 -RW-----VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC  174 (361)
T ss_pred             -ee-----EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE
Confidence             00     0011122233456666666643 3568999999999999865321      111       12234556678


Q ss_pred             EEECCC---CCEEEEEEec-----CeEEEEECCCcc----ceecccccccCCCeEEEEECCCC----CeEEEEeCCCcEE
Q psy13076        268 VRYSPS---GSHFASAGFD-----GKVFLYDGASAD----LVSELGNPAHKGGVYAVAWKPDG----TQLLTASGDKTCK  331 (423)
Q Consensus       268 l~~s~~---g~~l~s~s~d-----g~i~vwd~~~~~----~~~~~~~~~~~~~i~~l~~~~~~----~~l~s~s~d~~i~  331 (423)
                      +.|+|.   .++||.|+.+     +.++||......    .+.++  ..|...|++++|.|+-    ..|++++.|| |+
T Consensus       175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L--~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~  251 (361)
T KOG2445|consen  175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL--PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VR  251 (361)
T ss_pred             EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc--CCCCCcceeeeeccccCCceeeEEEeecCc-EE
Confidence            999974   4578888766     478888765432    23344  4689999999999963    5799999999 99


Q ss_pred             EEecCCcce-eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe
Q psy13076        332 LWDIETKSA-VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG  410 (423)
Q Consensus       332 iwd~~~~~~-i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~  410 (423)
                      ||.++.... +.+                  +.+.+...-+.   ++    -..+..+.+|+.+|+.+.|+-.|..|+|.
T Consensus       252 I~~v~~~~s~i~~------------------ee~~~~~~~~~---l~----v~~vs~~~~H~~~VWrv~wNmtGtiLsSt  306 (361)
T KOG2445|consen  252 IFKVKVARSAIEE------------------EEVLAPDLMTD---LP----VEKVSELDDHNGEVWRVRWNMTGTILSST  306 (361)
T ss_pred             EEEEeeccchhhh------------------hcccCCCCccc---cc----eEEeeeccCCCCceEEEEEeeeeeEEeec
Confidence            999875321 100                  00000000000   11    12244577999999999999999999999


Q ss_pred             cCCCcEEEeeC
Q psy13076        411 SHDGFITRWNA  421 (423)
Q Consensus       411 s~D~~i~~W~~  421 (423)
                      |.||.||+|..
T Consensus       307 GdDG~VRLWka  317 (361)
T KOG2445|consen  307 GDDGCVRLWKA  317 (361)
T ss_pred             CCCceeeehhh
Confidence            99999999964

>KOG0305|consensus

Probab=99.95  E-value=3.5e-25  Score=202.09  Aligned_cols=275  Identities=22%  Similarity=0.326  Sum_probs=205.4

Q ss_pred             EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076         14 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP   93 (423)
Q Consensus        14 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~   93 (423)
                      |-...+++.+..-.|.+|+-.... ......-++..|+++.|+++|.+|+.|..+|.|.+||.+..+....+...+....
T Consensus       185 Wss~n~laValg~~vylW~~~s~~-v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rv  263 (484)
T KOG0305|consen  185 WSSANVLAVALGQSVYLWSASSGS-VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRV  263 (484)
T ss_pred             cccCCeEEEEecceEEEEecCCCc-eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCcee
Confidence            544434445666799999975422 2223333489999999999999999999999999999988776666655455555


Q ss_pred             eEEeeCCCCCeEEEe-cCCeEEEEecCCCcccc-cccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee
Q psy13076         94 IVLGGDPKGKNFLYT-NGNSVIIRNIENPAISD-IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF  171 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  171 (423)
                      .++++.  ...+... .+..+..+++..+.... ++.+|...|..++|++|+.++|+|+.|+.+.|||....+..  ..+
T Consensus       264 g~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~--~~~  339 (484)
T KOG0305|consen  264 GSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK--FTF  339 (484)
T ss_pred             EEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc--EEE
Confidence            666666  2233332 34567778877654433 48899999999999999999999999999999998544433  345


Q ss_pred             cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC
Q psy13076        172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP  251 (423)
Q Consensus       172 ~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~  251 (423)
                      ..+.+.|.+++|+|-.+.+++.|                                          .|+.|++|+.|+...
T Consensus       340 ~~H~aAVKA~awcP~q~~lLAsG------------------------------------------GGs~D~~i~fwn~~~  377 (484)
T KOG0305|consen  340 TEHTAAVKALAWCPWQSGLLATG------------------------------------------GGSADRCIKFWNTNT  377 (484)
T ss_pred             eccceeeeEeeeCCCccCceEEc------------------------------------------CCCcccEEEEEEcCC
Confidence            55667888888888655444332                                          245688899998765


Q ss_pred             ceeeeeccccccCeEEEEECCCCCEEEEEE--ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCc
Q psy13076        252 FKFKMTKQEHSRFVQAVRYSPSGSHFASAG--FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT  329 (423)
Q Consensus       252 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~  329 (423)
                      .+.... ......|..|.|+|..+-|+++.  .++.|.||+..+.+.+..+  .+|...|..++++|||..+++|+.|.+
T Consensus       378 g~~i~~-vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l--~gH~~RVl~la~SPdg~~i~t~a~DET  454 (484)
T KOG0305|consen  378 GARIDS-VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL--LGHTSRVLYLALSPDGETIVTGAADET  454 (484)
T ss_pred             CcEecc-cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee--cCCcceeEEEEECCCCCEEEEecccCc
Confidence            543322 23456799999999987555533  5778999999998777776  479999999999999999999999999


Q ss_pred             EEEEecCCc
Q psy13076        330 CKLWDIETK  338 (423)
Q Consensus       330 i~iwd~~~~  338 (423)
                      +++|++-..
T Consensus       455 lrfw~~f~~  463 (484)
T KOG0305|consen  455 LRFWNLFDE  463 (484)
T ss_pred             EEeccccCC
Confidence            999998653

>KOG0294|consensus

Probab=99.95  E-value=2.5e-25  Score=185.76  Aligned_cols=242  Identities=21%  Similarity=0.371  Sum_probs=190.6

Q ss_pred             ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       125 ~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      ..+..|.++|++++.+  +.|+|||+.|.+|+|||+.+..++-..  ..+.+.|+++.|.++-.                
T Consensus        37 F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l--l~HagsitaL~F~~~~S----------------   96 (362)
T KOG0294|consen   37 FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL--LSHAGSITALKFYPPLS----------------   96 (362)
T ss_pred             ccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce--eccccceEEEEecCCcc----------------
Confidence            3567899999999874  789999999999999999876543222  22345666666655321                


Q ss_pred             eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC
Q psy13076        205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG  284 (423)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg  284 (423)
                                                 ...+++|+.||.|.+|+...+.+...+..|...|+.++.+|.|++.++.+.|+
T Consensus        97 ---------------------------~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~  149 (362)
T KOG0294|consen   97 ---------------------------KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQ  149 (362)
T ss_pred             ---------------------------hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCc
Confidence                                       01388999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEE-ecCcE
Q psy13076        285 KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL-WQGDY  363 (423)
Q Consensus       285 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~-~~g~~  363 (423)
                      .++.||+-.|+....+.. .+.  .+.+.|+|.|.+++..+.++ |-+|.+.+..........  .+  ..+.. -++..
T Consensus       150 ~lr~WNLV~Gr~a~v~~L-~~~--at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~--~r--~l~~~~l~~~~  221 (362)
T KOG0294|consen  150 VLRTWNLVRGRVAFVLNL-KNK--ATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP--KR--ILCATFLDGSE  221 (362)
T ss_pred             eeeeehhhcCccceeecc-CCc--ceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc--cc--ceeeeecCCce
Confidence            999999988876554432 122  24599999999988887764 899998877655443221  11  22222 27889


Q ss_pred             EEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEe--cCCCCeEEEecCCCcEEEeeCC
Q psy13076        364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALAL--SPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       364 l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~--sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      +++|..++.|.+||... ..+...+.+|...|-++.+  .|++.+|+|+|.||.|++||++
T Consensus       222 L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  222 LLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             EEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence            99999999999999987 5667788999999999995  5778899999999999999975

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=1.1e-23  Score=190.86  Aligned_cols=279  Identities=16%  Similarity=0.181  Sum_probs=196.5

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeE-EEecCCCceEEeecCCcceeecccCCCCCCce
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV-FTGSHDGFITRWNAKTEYIFATLPRTQRGQPI   94 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~   94 (423)
                      ++.+++++.||.|++||+.+ .++...+.+|.. +.+++|+|+++.+ ++++.|+.|++||..+++....+.        
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t-~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------   70 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTAT-LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--------   70 (300)
T ss_pred             CcEEEEecCCCEEEEEECCC-CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence            46788999999999999976 456777777654 6789999999876 677889999999998765433221        


Q ss_pred             EEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEE-EccCCcEEEEEcCCCceeEEeeecC
Q psy13076         95 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS-GDISGKVRIWDTVNKEHILKNEFHP  173 (423)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~  173 (423)
                                                        .+. .+..+.|+|+++.+++ ++.|+.+++||+.+.+.+....   
T Consensus        71 ----------------------------------~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~---  112 (300)
T TIGR03866        71 ----------------------------------SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP---  112 (300)
T ss_pred             ----------------------------------CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee---
Confidence                                              111 1345679999987755 4568999999998765443222   


Q ss_pred             CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce
Q psy13076        174 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK  253 (423)
Q Consensus       174 ~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~  253 (423)
                      ....+..++|+|+++.+++...... ....++..++.....+.. ...+..+.|+|++...++++..++.+++|+....+
T Consensus       113 ~~~~~~~~~~~~dg~~l~~~~~~~~-~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~  190 (300)
T TIGR03866       113 VGVEPEGMAVSPDGKIVVNTSETTN-MAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK  190 (300)
T ss_pred             CCCCcceEEECCCCCEEEEEecCCC-eEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence            1234678999999998887665432 233445444444333322 23456789999998766677779999999987655


Q ss_pred             eeeecccc-------ccCeEEEEECCCCCEEEE-EEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEE-
Q psy13076        254 FKMTKQEH-------SRFVQAVRYSPSGSHFAS-AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA-  324 (423)
Q Consensus       254 ~~~~~~~~-------~~~i~~l~~s~~g~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~-  324 (423)
                      .......+       ......++|+|+|++++. .+.++.+.+||..+++....+.   +...+.+++|+|+|++|+++ 
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~  267 (300)
T TIGR03866       191 VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTN  267 (300)
T ss_pred             eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEc
Confidence            43222111       112346889999998544 4456789999998887665442   34568899999999999876 


Q ss_pred             eCCCcEEEEecCCcceeeeeeeC
Q psy13076        325 SGDKTCKLWDIETKSAVSEFLMG  347 (423)
Q Consensus       325 s~d~~i~iwd~~~~~~i~~~~~~  347 (423)
                      +.+++|++||+.+++.+..+..+
T Consensus       268 ~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       268 GVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             CCCCeEEEEECCCCcEEEEEEcc
Confidence            56899999999999988776543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0299|consensus

Probab=99.94  E-value=7.6e-25  Score=191.52  Aligned_cols=270  Identities=20%  Similarity=0.258  Sum_probs=202.5

Q ss_pred             CCcccceeeEEEEeCCEEEEEeccceEEEEeccCCCCcee---e-------------c-ccccCceeEEEEeCCCCeEEE
Q psy13076          2 GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR---V-------------I-KGHNKPITALALSPDRGTVFT   64 (423)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~---~-------------~-~gh~~~V~~l~~~~~~~~l~s   64 (423)
                      .+|++=-+++..+|++++++++.||+|.=|++.++.+..+   .             - ++|.+.|.+++.++|+++|++
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence            3567777888889999999999999999999876543211   1             1 389999999999999999999


Q ss_pred             ecCCCceEEeecCCcceeecccCCCCCCceEEeeCC-CCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCC
Q psy13076         65 GSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDP-KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG  143 (423)
Q Consensus        65 g~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~  143 (423)
                      |+.|..|.||+.++..-.+.+.. +++....+++-. ..+.+..+.+..+.+|+++.-....++.||.+.|..+....-+
T Consensus       220 gg~d~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re  298 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE  298 (479)
T ss_pred             cCCCceEEEecCcccchhhcccc-cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc
Confidence            99999999999998765555443 234444444433 3455666778899999999989999999999999999888778


Q ss_pred             CEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCccee
Q psy13076        144 FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN  223 (423)
Q Consensus       144 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  223 (423)
                      +.+-.|+.|+++++|++.+...+   .+.+..+.                                            +.
T Consensus       299 R~vtVGgrDrT~rlwKi~eesql---ifrg~~~s--------------------------------------------id  331 (479)
T KOG0299|consen  299 RCVTVGGRDRTVRLWKIPEESQL---IFRGGEGS--------------------------------------------ID  331 (479)
T ss_pred             ceEEeccccceeEEEecccccee---eeeCCCCC--------------------------------------------ee
Confidence            77777889999999998543322   12222223                                            34


Q ss_pred             EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec------------cccccCeEEEEECCCCCEEEEEEecCeEEEEEC
Q psy13076        224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK------------QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDG  291 (423)
Q Consensus       224 ~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~------------~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~  291 (423)
                      |++|..+.  .+++||.+|.|.+|+....+...+.            ..++.+|++|+..|...++|+|+.+|.|++|-.
T Consensus       332 cv~~In~~--HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  332 CVAFINDE--HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             eEEEeccc--ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence            44444333  4889999999999986443332211            112238999999999999999999999999998


Q ss_pred             CCc----cceecccccccCCCeEEEEECCCCCeEEEE
Q psy13076        292 ASA----DLVSELGNPAHKGGVYAVAWKPDGTQLLTA  324 (423)
Q Consensus       292 ~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~  324 (423)
                      ..+    ..+..++   -.+.|++++|+++|+++++|
T Consensus       410 ~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  410 EDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             cCCccccceeeecc---cccEEEEEEEccCCCEEEEe
Confidence            776    2344443   46789999999999977766

>KOG0264|consensus

Probab=99.94  E-value=2.8e-25  Score=194.09  Aligned_cols=244  Identities=24%  Similarity=0.360  Sum_probs=187.9

Q ss_pred             eCCEEEEEeccceEEEEeccC-CCC--------ceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeec
Q psy13076         15 QGDYLLTVSLSGFISYLDVNN-PST--------PIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~-~~~--------~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      +...+|+.+..+.|.|||... +..        |-.+|+||.++=..|+|++... .|++|+.|++|.+||++.....  
T Consensus       136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~--  213 (422)
T KOG0264|consen  136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE--  213 (422)
T ss_pred             CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC--
Confidence            366788889999999999642 222        2337899999888999999654 7999999999999999763210  


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCC
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~  163 (423)
                            .                           ..-.....+.+|...|..++|+| +...|++++.|+.+.|||.++.
T Consensus       214 ------~---------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~  260 (422)
T KOG0264|consen  214 ------D---------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN  260 (422)
T ss_pred             ------C---------------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC
Confidence                  0                           00112345789999999999999 5678899999999999998752


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT  243 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~  243 (423)
                      .....                                            .....|..+++|++|+|-+.++||+||.|++
T Consensus       261 ~~~~~--------------------------------------------~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t  296 (422)
T KOG0264|consen  261 TSKPS--------------------------------------------HSVKAHSAEVNCVAFNPFNEFILATGSADKT  296 (422)
T ss_pred             CCCCc--------------------------------------------ccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence            11100                                            1123466677888888888888999999999


Q ss_pred             EEEEcCCCce-eeeeccccccCeEEEEECCCCC-EEEEEEecCeEEEEECCCcccee------------cccccccCCCe
Q psy13076        244 IAVFEGPPFK-FKMTKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASADLVS------------ELGNPAHKGGV  309 (423)
Q Consensus       244 i~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~~~~------------~~~~~~~~~~i  309 (423)
                      +.+||.+..+ ...++..|...|.++.|+|... .||+++.|+.+.+||+..-....            -+...+|...|
T Consensus       297 V~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV  376 (422)
T KOG0264|consen  297 VALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV  376 (422)
T ss_pred             EEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc
Confidence            9999987654 3457789999999999999865 78999999999999986432221            13445899999


Q ss_pred             EEEEECCCCCe-EEEEeCCCcEEEEecCC
Q psy13076        310 YAVAWKPDGTQ-LLTASGDKTCKLWDIET  337 (423)
Q Consensus       310 ~~l~~~~~~~~-l~s~s~d~~i~iwd~~~  337 (423)
                      ..+.|+|+..+ ++|.+.|+.+.||....
T Consensus       377 ~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  377 SDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            99999998875 56778999999998763

>KOG0321|consensus

Probab=99.94  E-value=2.4e-25  Score=201.82  Aligned_cols=309  Identities=19%  Similarity=0.251  Sum_probs=208.0

Q ss_pred             eCCEEEEEeccceEEEEeccCCCC-----ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPST-----PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~-----~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      .-+.|+.+-.||.|.++|..-...     .++...+|...|..+.|-|....|++++.|.++|.||+++..+..      
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G------  136 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG------  136 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec------
Confidence            357888899999999999742111     134456899999999999966789999999999999998754321      


Q ss_pred             CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                                                        ...+.||.+.|.+++|+| +...|++|+.||.|.|||+.....-..
T Consensus       137 ----------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~  182 (720)
T KOG0321|consen  137 ----------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL  182 (720)
T ss_pred             ----------------------------------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH
Confidence                                              013568999999999999 566889999999999999864321000


Q ss_pred             eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076        169 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE  248 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~  248 (423)
                      .++.      ..          +.            ....+.     +.           |..+.       -..+.-|.
T Consensus       183 e~~~------~~----------~~------------~~~n~~-----pt-----------pskp~-------~kr~~k~k  211 (720)
T KOG0321|consen  183 EEFD------NR----------IY------------GRHNTA-----PT-----------PSKPL-------KKRIRKWK  211 (720)
T ss_pred             HHHh------hh----------hh------------ccccCC-----CC-----------CCchh-------hccccccc
Confidence            0000      00          00            000000     00           00000       00000010


Q ss_pred             CCCceeeeeccccccCeEEEEECCCCCEEEEEEe-cCeEEEEECCCccceeccc------cccc---CCCeEEEEECCCC
Q psy13076        249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF-DGKVFLYDGASADLVSELG------NPAH---KGGVYAVAWKPDG  318 (423)
Q Consensus       249 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~-dg~i~vwd~~~~~~~~~~~------~~~~---~~~i~~l~~~~~~  318 (423)
                      ..       .......|+.+. ..|...||+++. |+.|+|||++.........      ..-|   .-++.++..+..|
T Consensus       212 A~-------s~ti~ssvTvv~-fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG  283 (720)
T KOG0321|consen  212 AA-------SNTIFSSVTVVL-FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG  283 (720)
T ss_pred             cc-------cCceeeeeEEEE-EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence            00       001112244444 467788888887 9999999998654432221      1123   3457888888899


Q ss_pred             CeEEEEeCCCcEEEEecCCcceeeeeeeCce---eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCce
Q psy13076        319 TQLLTASGDKTCKLWDIETKSAVSEFLMGNQ---VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPI  395 (423)
Q Consensus       319 ~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v  395 (423)
                      .+|++.+.|+.|..||+.+...-........   .....-..+|++.++++|+.+...++|.+..++.+...+.||...|
T Consensus       284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV  363 (720)
T KOG0321|consen  284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV  363 (720)
T ss_pred             CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE
Confidence            9999999999999999976433211111111   1112234568999999999999999999999999988999999999


Q ss_pred             eEEEecCCC-CeEEEecCCCcEEEeeCC
Q psy13076        396 TALALSPDR-GTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       396 ~~i~~sp~~-~~l~s~s~D~~i~~W~~~  422 (423)
                      ++++|.|.. .-++|+++|-++++|++.
T Consensus       364 t~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  364 TTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             EEEeeccccCCCceeeccCcceEEEecc
Confidence            999998743 457788999999999974

>KOG0294|consensus

Probab=99.94  E-value=6.6e-24  Score=177.34  Aligned_cols=264  Identities=19%  Similarity=0.238  Sum_probs=197.3

Q ss_pred             EEEEeccceEEEEeccCCC-------C----ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076         19 LLTVSLSGFISYLDVNNPS-------T----PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus        19 ~~~~~~dg~i~~~d~~~~~-------~----~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      +++|++-..|.=++++-++       +    |...+.+|.++|++++.+  +++++|||.|.+|+|+|+.+...+..+..
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~   81 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS   81 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence            5668888888888775433       1    256778999999999974  78999999999999999988766655544


Q ss_pred             CCCCCceEEeeCCCC---CeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc
Q psy13076         88 TQRGQPIVLGGDPKG---KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE  164 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~  164 (423)
                      + .+...++.+.+.-   .++.++.+..+.+|+...-.+.+.+..|+..|+.+..+|.+++.++.+.|+.+++||+-+++
T Consensus        82 H-agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   82 H-AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             c-ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            3 4555555555443   33444557789999999889999999999999999999999999999999999999998766


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI  244 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i  244 (423)
                      ......+   ....+.+.|+|.|.++++.....   .-+|..+......++... ..+.++.|-...  .+++|..|+.|
T Consensus       161 ~a~v~~L---~~~at~v~w~~~Gd~F~v~~~~~---i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~--~L~vG~d~~~i  231 (362)
T KOG0294|consen  161 VAFVLNL---KNKATLVSWSPQGDHFVVSGRNK---IDIYQLDNASVFREIENP-KRILCATFLDGS--ELLVGGDNEWI  231 (362)
T ss_pred             cceeecc---CCcceeeEEcCCCCEEEEEeccE---EEEEecccHhHhhhhhcc-ccceeeeecCCc--eEEEecCCceE
Confidence            4332222   23346699999999888765432   234444433333333332 345555555433  48899999999


Q ss_pred             EEEcCCCceeeeeccccccCeEEEEE--CCCCCEEEEEEecCeEEEEECCCc
Q psy13076        245 AVFEGPPFKFKMTKQEHSRFVQAVRY--SPSGSHFASAGFDGKVFLYDGASA  294 (423)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~i~~l~~--s~~g~~l~s~s~dg~i~vwd~~~~  294 (423)
                      .+||.........+.+|...|..+.+  .|++.||+++|.||.|++||+...
T Consensus       232 ~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  232 SLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            99998766666677889999988873  678889999999999999998654

>KOG0772|consensus

Probab=99.94  E-value=1e-24  Score=193.07  Aligned_cols=289  Identities=17%  Similarity=0.231  Sum_probs=204.2

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeecc----cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK----GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~----gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      +++.+.|-.+++||.|..|++||........+.|+    .....|++++|++.+.+++..+..-.+++.|-....+.   
T Consensus       173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~---  249 (641)
T KOG0772|consen  173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV---  249 (641)
T ss_pred             eeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceee---
Confidence            45667899999999999999999854333232332    34568999999999987766666667888876543222   


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC-CCEEEEEccCCcEEEEEcCCCc
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKE  164 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~  164 (423)
                                           -+......|.|+.      ...||...+++.+|+|+ ...++|++.||++|+||+.+.+
T Consensus       250 ---------------------e~~KGDQYI~Dm~------nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k  302 (641)
T KOG0772|consen  250 ---------------------EFSKGDQYIRDMY------NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK  302 (641)
T ss_pred             ---------------------eeeccchhhhhhh------ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence                                 1222223333332      24699999999999995 5689999999999999997644


Q ss_pred             eeE-Eee---ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc---ceecccCCCc--ceeEEEEecCCCeeE
Q psy13076        165 HIL-KNE---FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT---SVGEISGQSK--PINSCDFKPSRPFRI  235 (423)
Q Consensus       165 ~~~-~~~---~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~i~~~~~~~~~~~~~  235 (423)
                      ... ...   ..+..-+++..+|+||++.+++++.+.  ...+|..-...   ....-..|..  .|+++.|++++++ |
T Consensus       303 ~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG--SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-L  379 (641)
T KOG0772|consen  303 SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG--SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-L  379 (641)
T ss_pred             hheeEEeeccCCCcccCceeeecCCCcchhhhcccCC--ceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-h
Confidence            221 111   112234688999999999977665443  23455532111   1112234554  8999999999986 8


Q ss_pred             EEEeCCCeEEEEcCCCceee-eecccc--ccCeEEEEECCCCCEEEEEEe------cCeEEEEECCCccceecccccccC
Q psy13076        236 ITGSEDNTIAVFEGPPFKFK-MTKQEH--SRFVQAVRYSPSGSHFASAGF------DGKVFLYDGASADLVSELGNPAHK  306 (423)
Q Consensus       236 ~s~s~d~~i~~~~~~~~~~~-~~~~~~--~~~i~~l~~s~~g~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~  306 (423)
                      ++-+.|+++++||++.++-. ....+.  ...-+.++|||+.+++++|+.      .|.+.+||..+.+.+.++..  ..
T Consensus       380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i--~~  457 (641)
T KOG0772|consen  380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI--ST  457 (641)
T ss_pred             hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC--CC
Confidence            89999999999998766522 122222  223467899999999999874      36799999998888877754  35


Q ss_pred             CCeEEEEECCCCCeEEEEeCCCcEEEE
Q psy13076        307 GGVYAVAWKPDGTQLLTASGDKTCKLW  333 (423)
Q Consensus       307 ~~i~~l~~~~~~~~l~s~s~d~~i~iw  333 (423)
                      ..|..+.|+|.=+.++.++.||++++|
T Consensus       458 aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  458 ASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ceEEEEeecchhhheeeecCCCceEEE
Confidence            678889999999999999999999976

>KOG0647|consensus

Probab=99.93  E-value=3.5e-24  Score=177.94  Aligned_cols=241  Identities=20%  Similarity=0.375  Sum_probs=178.3

Q ss_pred             CcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC
Q psy13076        130 HSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET  208 (423)
Q Consensus       130 h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~  208 (423)
                      ..+.|..++||| ...+++.+|.|++||+|+++............+.++|.+++|+.||.                    
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs--------------------   85 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS--------------------   85 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc--------------------
Confidence            456899999999 55566689999999999997642222222334456666666666553                    


Q ss_pred             CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC--EEEEEEecCeE
Q psy13076        209 GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS--HFASAGFDGKV  286 (423)
Q Consensus       209 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~--~l~s~s~dg~i  286 (423)
                                               .+++|+.|+.+++||+...+ ..+...|..+|..+.|-+...  .|++||.|++|
T Consensus        86 -------------------------kVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTl  139 (347)
T KOG0647|consen   86 -------------------------KVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTL  139 (347)
T ss_pred             -------------------------eEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccce
Confidence                                     25667889999999987653 446678999999999987655  79999999999


Q ss_pred             EEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC-ceeEeeEEEEEecCcEEE
Q psy13076        287 FLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG-NQVEDQQVSCLWQGDYLL  365 (423)
Q Consensus       287 ~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~l~  365 (423)
                      +.||.++...+.++..   ...+.++..  ....++.+..++.|.+|+++..........+ -+.....+++..+.+..+
T Consensus       140 KfWD~R~~~pv~t~~L---PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a  214 (347)
T KOG0647|consen  140 KFWDTRSSNPVATLQL---PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA  214 (347)
T ss_pred             eecccCCCCeeeeeec---cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE
Confidence            9999999888877754   345665544  4568889999999999999776433222111 234456677778888889


Q ss_pred             EEeCCCcEEEEecCCCCC-ceEEeccCC---------CceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        366 TVSLSGFISYLDVNNPST-PIRVIKGHN---------KPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       366 ~~~~~~~i~~~~~~~~~~-~~~~~~~h~---------~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      .|+..|.+.+..+..+.+ .--.++-|.         -+|++|+|+|.-..|+|+|.||++.+||-
T Consensus       215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK  280 (347)
T ss_pred             eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecc
Confidence            999999988887766422 111244454         26999999999999999999999999995

>KOG0308|consensus

Probab=99.93  E-value=4.5e-25  Score=200.50  Aligned_cols=281  Identities=17%  Similarity=0.294  Sum_probs=221.2

Q ss_pred             EEEEC-CCCCEEEEEccCCcEEEEEcCCCcee----EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC-
Q psy13076        136 VAKYS-PSGFYIASGDISGKVRIWDTVNKEHI----LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG-  209 (423)
Q Consensus       136 ~~~~s-p~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~-  209 (423)
                      .++.+ |.++||.||+.||.|++|+.......    ....+..|.+-|+++....+++.++.++.+  ....+|..... 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsD--tTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSD--TTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCC--ceEEEeecccCc
Confidence            44444 46788999999999999998653321    123344566788888888899988887654  44567776665 


Q ss_pred             -cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee----------eeec-cccccCeEEEEECCCCCEE
Q psy13076        210 -TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF----------KMTK-QEHSRFVQAVRYSPSGSHF  277 (423)
Q Consensus       210 -~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~----------~~~~-~~~~~~i~~l~~s~~g~~l  277 (423)
                       .++..+..|...|.++++.......+|+|+.|+.|++||......          ...+ .++...|.+++.++.|..+
T Consensus       107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i  186 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII  186 (735)
T ss_pred             chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence             566778899999999999656666799999999999999764311          1112 2677889999999999999


Q ss_pred             EEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEE
Q psy13076        278 ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSC  357 (423)
Q Consensus       278 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~  357 (423)
                      ++|+.++-+++||.++++.+..+.  +|...|..+..++||+.++++|.|++||+||+..+.|+.++..+... .-.+.+
T Consensus       187 vsGgtek~lr~wDprt~~kimkLr--GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~-VWaL~~  263 (735)
T KOG0308|consen  187 VSGGTEKDLRLWDPRTCKKIMKLR--GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG-VWALQS  263 (735)
T ss_pred             EecCcccceEEeccccccceeeee--ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc-eEEEee
Confidence            999999999999999999888875  79999999999999999999999999999999999999998766543 334444


Q ss_pred             EecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        358 LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       358 ~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      .++=+.+.+|+.+|.|+.-|++++.... .+..-..+|..+..+.+.+-+=++..|+.|+-|..+
T Consensus       264 ~~sf~~vYsG~rd~~i~~Tdl~n~~~~t-lick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  264 SPSFTHVYSGGRDGNIYRTDLRNPAKST-LICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             CCCcceEEecCCCCcEEecccCCchhhe-EeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            5566778999999999999999864332 234456678888888666655667788999999764

>KOG0289|consensus

Probab=99.93  E-value=1.3e-23  Score=182.52  Aligned_cols=272  Identities=20%  Similarity=0.267  Sum_probs=218.1

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceE
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIV   95 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~   95 (423)
                      ...+++|+.|...-++|... .....+|+||...|+.+.|+|+...+++++.|-.|+||..-....              
T Consensus       231 ~~~ilTGG~d~~av~~d~~s-~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--------------  295 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPS-NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--------------  295 (506)
T ss_pred             CCcceecCCCCceEEEecch-hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC--------------
Confidence            47899999999999999865 445678999999999999999999999999999999998743210              


Q ss_pred             EeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCC
Q psy13076         96 LGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG  175 (423)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  175 (423)
                                                  ......|..+|+.+..+|.|.||++++.|+++-..|++++..+....-....
T Consensus       296 ----------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~  347 (506)
T KOG0289|consen  296 ----------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD  347 (506)
T ss_pred             ----------------------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc
Confidence                                        1123458889999999999999999999999999999988766543322233


Q ss_pred             CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK  255 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~  255 (423)
                      -.+++.+|+|||..+.+...  +....+|+.........+.+|..+|..+.|+.++-+ ++++.+|+.+++||.+..+..
T Consensus       348 v~~ts~~fHpDgLifgtgt~--d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~-Lat~add~~V~lwDLRKl~n~  424 (506)
T KOG0289|consen  348 VEYTSAAFHPDGLIFGTGTP--DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYW-LATAADDGSVKLWDLRKLKNF  424 (506)
T ss_pred             ceeEEeeEcCCceEEeccCC--CceEEEEEcCCccccccCCCCCCceeEEEeccCceE-EEEEecCCeEEEEEehhhccc
Confidence            45889999999976655433  344678888888888889999999999999988855 899999999999998876543


Q ss_pred             eeccc-cccCeEEEEECCCCCEEEEEEecCeEEEEECCC--ccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEE
Q psy13076        256 MTKQE-HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS--ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKL  332 (423)
Q Consensus       256 ~~~~~-~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~i  332 (423)
                      .++.. ....+.++.|.+.|.|++.++.|=+|++++-++  ...+.++  ..|.+..+++.|...-++++++|.|..+++
T Consensus       425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~--~~~sg~st~v~Fg~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  425 KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL--ADHSGLSTGVRFGEHAQYLASTSMDAILRL  502 (506)
T ss_pred             ceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh--hhcccccceeeecccceEEeeccchhheEE
Confidence            33322 223689999999999999998888888887443  3344444  347778899999999999999999999888


Q ss_pred             Eec
Q psy13076        333 WDI  335 (423)
Q Consensus       333 wd~  335 (423)
                      +-+
T Consensus       503 ~a~  505 (506)
T KOG0289|consen  503 YAL  505 (506)
T ss_pred             eec
Confidence            754

>KOG0264|consensus

Probab=99.93  E-value=1.6e-24  Score=189.42  Aligned_cols=262  Identities=17%  Similarity=0.303  Sum_probs=197.5

Q ss_pred             cCCcceEEEEEECCC-CCEEEEEccCCcEEEEEcCCCcee--------EEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        128 TEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHI--------LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       128 ~~h~~~i~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~~~--------~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                      ..|.+.|+.+++.|+ ..++|+.+..+.+.|||..+....        ....+.++..+-..++|++.....++.++.. 
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d-  199 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD-  199 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC-
Confidence            368999999999994 567788888999999997643211        1223344445567899999766555444333 


Q ss_pred             eeeEEEeecCC-------cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC--CceeeeeccccccCeEEEE
Q psy13076        199 RFGHVFMSETG-------TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP--PFKFKMTKQEHSRFVQAVR  269 (423)
Q Consensus       199 ~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~--~~~~~~~~~~~~~~i~~l~  269 (423)
                      ....+|+....       .....+.+|...|..++|++.....+++++.|+.+.+||.+  +.+......+|...+.+++
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~  279 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA  279 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence            33456654321       12345678999999999999988889999999999999998  5666777889999999999


Q ss_pred             ECCCCC-EEEEEEecCeEEEEECCCccc-eecccccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076        270 YSPSGS-HFASAGFDGKVFLYDGASADL-VSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       270 ~s~~g~-~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      |+|-+. .||+||.|++|.+||++.-.. +..+  ..|...|..|.|+|.. ..|++++.|+.+.+||+..-....... 
T Consensus       280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~--e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e-  356 (422)
T KOG0264|consen  280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTF--EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE-  356 (422)
T ss_pred             eCCCCCceEEeccCCCcEEEeechhcccCceec--cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh-
Confidence            999655 679999999999999987553 3444  4699999999999965 688999999999999987532111100 


Q ss_pred             CceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCe-EEEecCCCcEEEeeCC
Q psy13076        347 GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT-VFTGSHDGFITRWNAK  422 (423)
Q Consensus       347 ~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~-l~s~s~D~~i~~W~~~  422 (423)
                                   +.                -..+..++-...||...|++++|+|...+ |+|+++|+.+.||+++
T Consensus       357 -------------da----------------~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  357 -------------DA----------------EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             -------------hh----------------ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                         00                01123344567899999999999999998 5689999999999875

>KOG0301|consensus

Probab=99.93  E-value=8.4e-24  Score=193.61  Aligned_cols=282  Identities=20%  Similarity=0.313  Sum_probs=213.1

Q ss_pred             ccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeE-EEECCCCCeEEEEEcCCceee
Q psy13076        123 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD-IAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       123 ~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~-v~~s~~~~~~~~~~~~~~~~~  201 (423)
                      +.+.+.||+..|..+++.+. ..++++|.|+++++|+-..++......+..+.+.+.. +++-+..+..++.+ +.+...
T Consensus         6 ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g-~~D~~i   83 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVG-GMDTTI   83 (745)
T ss_pred             eEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEee-cccceE
Confidence            45678899999988887654 4799999999999999766554433334444455544 77776444433333 234455


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG  281 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s  281 (423)
                      .++.......+..+++|...|.++....++.  +++||.|.++++|...  .+....++|...|.+++.-|++ .+++||
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgs  158 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGS  158 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEecc
Confidence            6788888889999999999998887665553  8999999999999643  3444588999999999998888 889999


Q ss_pred             ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecC
Q psy13076        282 FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQG  361 (423)
Q Consensus       282 ~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g  361 (423)
                      .|+.|++|..  ++.++++.  +|+..|+++++-|++ .|+|++.||.||+|++ +++++.++. ++..-.-+++...++
T Consensus       159 aDKtIklWk~--~~~l~tf~--gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~  231 (745)
T KOG0301|consen  159 ADKTIKLWKG--GTLLKTFS--GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSD  231 (745)
T ss_pred             CcceeeeccC--Cchhhhhc--cchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeee-ccceEEEEEEecCCC
Confidence            9999999986  56677774  699999999998865 4679999999999999 677776664 333344455555678


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       362 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      ..+++++.|+++++|+..   .....+.--...||++.+-++|. |++|+.||.||+|...
T Consensus       232 ~~Ivs~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  232 GLIVSTGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             CeEEEecCCceEEEeecC---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            889999999999999875   22233333334899999988775 5678899999999754

>KOG0301|consensus

Probab=99.93  E-value=8.6e-24  Score=193.56  Aligned_cols=263  Identities=14%  Similarity=0.239  Sum_probs=207.1

Q ss_pred             EeCCEEEEEeccceEEEEeccCCCC-ceeecccccCceeE-EEEeC-CCCeEEEecCCCceEEeecCCcceeecccCCCC
Q psy13076         14 WQGDYLLTVSLSGFISYLDVNNPST-PIRVIKGHNKPITA-LALSP-DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQR   90 (423)
Q Consensus        14 ~~~~~~~~~~~dg~i~~~d~~~~~~-~~~~~~gh~~~V~~-l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~   90 (423)
                      =++..++++|+||.+++|+...... ....+.+|.+-|.+ +++.+ ++-.|++|+.|.+|.+|...+..          
T Consensus        23 ~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~----------   92 (745)
T KOG0301|consen   23 TDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE----------   92 (745)
T ss_pred             cCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCC----------
Confidence            3688899999999999999854333 34678899988887 77775 45569999999999999876532          


Q ss_pred             CCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEee
Q psy13076         91 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE  170 (423)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  170 (423)
                                                      ...++.||++.|.++....++. ++|||.|.++++|...+..    ..
T Consensus        93 --------------------------------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~----~~  135 (745)
T KOG0301|consen   93 --------------------------------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV----YS  135 (745)
T ss_pred             --------------------------------chhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh----cc
Confidence                                            2345678999998888777776 8999999999999865322    22


Q ss_pred             ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076        171 FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP  250 (423)
Q Consensus       171 ~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~  250 (423)
                      ..+|..+|.+++.-|++ .+++++++.  .  +..+..++.+..+++|...|..+++-|+..  +++|+.||.|+.|+. 
T Consensus       136 l~gH~asVWAv~~l~e~-~~vTgsaDK--t--IklWk~~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-  207 (745)
T KOG0301|consen  136 LQGHTASVWAVASLPEN-TYVTGSADK--T--IKLWKGGTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-  207 (745)
T ss_pred             cCCcchheeeeeecCCC-cEEeccCcc--e--eeeccCCchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-
Confidence            55677888999988888 445544432  2  334455788888999999999999998865  789999999999997 


Q ss_pred             CceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076        251 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC  330 (423)
Q Consensus       251 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i  330 (423)
                      ...+.+...+|...+.++....+++.+++++.|+++++|+..  ++...+..+  ...|+++.+-++|. +++|+.||.|
T Consensus       208 ~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~V  282 (745)
T KOG0301|consen  208 DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRV  282 (745)
T ss_pred             cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceE
Confidence            456677888999999999988888999999999999999876  555555422  34789999988886 5778899999


Q ss_pred             EEEecC
Q psy13076        331 KLWDIE  336 (423)
Q Consensus       331 ~iwd~~  336 (423)
                      |||...
T Consensus       283 rVfT~~  288 (745)
T KOG0301|consen  283 RVFTVD  288 (745)
T ss_pred             EEEEec
Confidence            999765

>KOG0300|consensus

Probab=99.93  E-value=3.7e-24  Score=178.96  Aligned_cols=313  Identities=16%  Similarity=0.211  Sum_probs=223.7

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCc-ceeeccc-C
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTE-YIFATLP-R   87 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~-~~~~~~~-~   87 (423)
                      |+...-.-.+.++|.|..-++|.++. ..++-.+.||.+.|+++.|++.+.++++++.|++..||...-. ++-.... .
T Consensus       154 Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~  232 (481)
T KOG0300|consen  154 VAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS  232 (481)
T ss_pred             ehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCC
Confidence            33333234789999999999999987 4567799999999999999999999999999999999962100 0000000 0


Q ss_pred             CCCCCceEEeeCCCCCeEEE----ecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC
Q psy13076         88 TQRGQPIVLGGDPKGKNFLY----TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~  163 (423)
                      .+.+.. -...+........    +.+-.+++       ....|++|...|.+..|-..|+.+++++.|.+..+||++++
T Consensus       233 ~hSsEe-E~e~sDe~~~d~d~~~~sD~~tiRv-------Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg  304 (481)
T KOG0300|consen  233 DHSSEE-EEEHSDEHNRDTDSSEKSDGHTIRV-------PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG  304 (481)
T ss_pred             CCCchh-hhhcccccccccccccccCCceeee-------eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence            000000 0000000000000    11112222       23467899999999999999999999999999999999998


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC-cceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG-TSVGEISGQSKPINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                      +.+...  .++..+.+.++-+|..+.+++.  +++...++|+.... ..+..+.+|...+++..|..+.  .+++|+.|.
T Consensus       305 e~v~~L--tGHd~ELtHcstHptQrLVvTs--SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDr  378 (481)
T KOG0300|consen  305 EVVNIL--TGHDSELTHCSTHPTQRLVVTS--SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDR  378 (481)
T ss_pred             ceeccc--cCcchhccccccCCcceEEEEe--ccCceeEeccchhhcceeeeecccccceeEEEEecCC--ceeecCCCc
Confidence            876543  3445667777778877655543  45566678876543 3456678999999999999876  489999999


Q ss_pred             eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecc---cccccCCCeEEEEECCCC-
Q psy13076        243 TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHKGGVYAVAWKPDG-  318 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~~~i~~l~~~~~~-  318 (423)
                      ++++||.+.+...+.......+++.++++..++.++.-..+..|++||+...++ ..+   ...+|...|.|.+|..+. 
T Consensus       379 TvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp  457 (481)
T KOG0300|consen  379 TVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHP  457 (481)
T ss_pred             eEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcc-ccCCcccccccceeeeeeeccccCc
Confidence            999999887765544455667788999998888888888889999999865443 333   345788899999997543 


Q ss_pred             -CeEEEEeCCCcEEEEecCCc
Q psy13076        319 -TQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       319 -~~l~s~s~d~~i~iwd~~~~  338 (423)
                       .-|++++.|+.+.=|.+...
T Consensus       458 ~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  458 ACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccccccccccceeeeeEeccc
Confidence             45789999999999987653

>KOG0639|consensus

Probab=99.93  E-value=3.1e-24  Score=189.50  Aligned_cols=287  Identities=16%  Similarity=0.263  Sum_probs=216.5

Q ss_pred             cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccc
Q psy13076         45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS  124 (423)
Q Consensus        45 gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  124 (423)
                      .|.+.|-.+.++...++++||+. |-|||||+....-        + .++.       +                    +
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~--------k-~Pvs-------q--------------------L  459 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN--------K-SPVS-------Q--------------------L  459 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC--------C-Cccc-------c--------------------c
Confidence            68889999999999999999986 7899999864210        0 0000       0                    0


Q ss_pred             ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       125 ~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      . ...-.+-|.++...|||+.|++|++-.++.|||+.......+.++....-.+.+++.+||.+.               
T Consensus       460 d-cl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakv---------------  523 (705)
T KOG0639|consen  460 D-CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKV---------------  523 (705)
T ss_pred             c-ccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccce---------------
Confidence            0 001224577888999999999999999999999987655444443332233445555555432               


Q ss_pred             eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC
Q psy13076        205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG  284 (423)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg  284 (423)
                                                    ..+|..||.|.+||.........+++|.+.+.|+.+++||..|.+|+-|+
T Consensus       524 ------------------------------cFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  524 ------------------------------CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             ------------------------------eeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence                                          34566799999999999999999999999999999999999999999999


Q ss_pred             eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEE
Q psy13076        285 KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL  364 (423)
Q Consensus       285 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l  364 (423)
                      +|+-||+++++.+.+..   ....|.++..+|++.+|+.|-.++.+-+......+  +....-+..-..++.+.+-|+++
T Consensus       574 tvRcWDlregrqlqqhd---F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~--kyqlhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQHD---FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE--KYQLHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             ceeehhhhhhhhhhhhh---hhhhheecccCCCccceeeecccCcEEEEecCCcc--ceeecccccEEEEEEecccCcee
Confidence            99999999988765542   45678999999999999999999988877665432  12222233334455666789999


Q ss_pred             EEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       365 ~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      ++...|+.+..|...-+...+.  ......|+++.+|.|+++|+|||.|+...+|.+
T Consensus       649 vStGkDnlLnawrtPyGasiFq--skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPYGASIFQ--SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eecCchhhhhhccCccccceee--ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999999999997655433222  234678999999999999999999998888865

>KOG1273|consensus

Probab=99.93  E-value=2.4e-23  Score=173.92  Aligned_cols=285  Identities=14%  Similarity=0.264  Sum_probs=204.7

Q ss_pred             eeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccC
Q psy13076         50 ITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE  129 (423)
Q Consensus        50 V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  129 (423)
                      .+|+.|++-|.+||.|+.||.|-+||+.|..+                                          .+++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------ar~lsa   63 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------ARMLSA   63 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------hhhhhc
Confidence            78999999999999999999999999987432                                          235678


Q ss_pred             CcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC
Q psy13076        130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG  209 (423)
Q Consensus       130 h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~  209 (423)
                      |.-+|.+++||+||+.|+|++.|..|++||+..+.......|.   .+|..+.|+|-....+++.--..           
T Consensus        64 H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~---spv~~~q~hp~k~n~~va~~~~~-----------  129 (405)
T KOG1273|consen   64 HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---SPVWGAQWHPRKRNKCVATIMEE-----------  129 (405)
T ss_pred             cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc---CccceeeeccccCCeEEEEEecC-----------
Confidence            9999999999999999999999999999999998877766664   68999999996555444321110           


Q ss_pred             cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEE
Q psy13076        210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLY  289 (423)
Q Consensus       210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vw  289 (423)
                                 ...-+.|++.- ..++.-+.|+.+                 +....+..|.+.|+|+.+|...|.+.++
T Consensus       130 -----------sp~vi~~s~~~-h~~Lp~d~d~dl-----------------n~sas~~~fdr~g~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  130 -----------SPVVIDFSDPK-HSVLPKDDDGDL-----------------NSSASHGVFDRRGKYIITGTSKGKLLVY  180 (405)
T ss_pred             -----------CcEEEEecCCc-eeeccCCCcccc-----------------ccccccccccCCCCEEEEecCcceEEEE
Confidence                       01112222110 001111111111                 0111223688999999999999999999


Q ss_pred             ECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce------e---eee-eeCceeEeeEEEEEe
Q psy13076        290 DGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA------V---SEF-LMGNQVEDQQVSCLW  359 (423)
Q Consensus       290 d~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~------i---~~~-~~~~~~~~~~~~~~~  359 (423)
                      |..+.+++..+... ....|..+.|+..|++|+..+.|+.||.|+++.-..      +   .++ ..-+......+.++-
T Consensus       181 ~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~  259 (405)
T KOG1273|consen  181 DAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG  259 (405)
T ss_pred             ecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence            99998877666432 236788999999999999999999999999873110      0   111 001112223344555


Q ss_pred             cCcEEEEEeC-CCcEEEEecCCCCCceEEeccCC-CceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        360 QGDYLLTVSL-SGFISYLDVNNPSTPIRVIKGHN-KPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       360 ~g~~l~~~~~-~~~i~~~~~~~~~~~~~~~~~h~-~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      +|+|+++++. .-.+++|....+ ..++.+.|-. ....++.|+|--..|++- ..|.+++|...
T Consensus       260 dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  260 DGEYVCAGSARAHALYIWEKSIG-SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             CccEEEeccccceeEEEEecCCc-ceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence            8999988874 346899987664 5678888877 568899999999999888 56899999753

>KOG4328|consensus

Probab=99.92  E-value=1.3e-23  Score=183.73  Aligned_cols=298  Identities=20%  Similarity=0.231  Sum_probs=213.0

Q ss_pred             eeecccccCceeEEEEeCCC--CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         40 IRVIKGHNKPITALALSPDR--GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~--~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      ..+.+-|.++|++++|+|..  .++|+|..-|.|=+||+.++.-         ..        +                
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~---------d~--------d----------------  225 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK---------DK--------D----------------  225 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC---------cc--------C----------------
Confidence            34567789999999999953  6899999999999999953210         00        0                


Q ss_pred             cCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                           -...+..|..+|+++.|+| +-..+++.|+||+||+=|++......-.........+.++.|+.+...++.+..-
T Consensus       226 -----~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~  300 (498)
T KOG4328|consen  226 -----GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV  300 (498)
T ss_pred             -----ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecc
Confidence                 0113467999999999999 5678999999999999998764321111111122345677888887776665433


Q ss_pred             CceeeEEEeecCCcc-eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee----eeeccccccCeEEEEEC
Q psy13076        197 RERFGHVFMSETGTS-VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF----KMTKQEHSRFVQAVRYS  271 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~----~~~~~~~~~~i~~l~~s  271 (423)
                      .  ..++++..+... ...+..|...|.+++++|.+++.++|++.|++.++||.+...-    ......|...|.++.||
T Consensus       301 G--~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS  378 (498)
T KOG4328|consen  301 G--NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS  378 (498)
T ss_pred             c--ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence            2  446777666554 6667778889999999999999999999999999999764432    24456788999999999


Q ss_pred             CCCCEEEEEEecCeEEEEECC----Cccceecccccc-cCC--CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeee
Q psy13076        272 PSGSHFASAGFDGKVFLYDGA----SADLVSELGNPA-HKG--GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       272 ~~g~~l~s~s~dg~i~vwd~~----~~~~~~~~~~~~-~~~--~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~  344 (423)
                      |.|..|++.+.|..|+|||.+    ......++.... +..  .....+|+|+.+++++|-.-..|-|+|-..++++.++
T Consensus       379 Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el  458 (498)
T KOG4328|consen  379 PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL  458 (498)
T ss_pred             CCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec
Confidence            999889999999999999974    222222232110 111  2346789999999999988889999999999888776


Q ss_pred             eeCceeEe-eEEEEEecCcEEEEE-eCCCcEEEEe
Q psy13076        345 LMGNQVED-QQVSCLWQGDYLLTV-SLSGFISYLD  377 (423)
Q Consensus       345 ~~~~~~~~-~~~~~~~~g~~l~~~-~~~~~i~~~~  377 (423)
                      ........ ....+.|.+..+++| ...|.|++|-
T Consensus       459 ~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  459 HDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             cCccccccccceeecccccceeccCCccceEEEEe
Confidence            43333222 223445677756655 4667787773

>KOG1963|consensus

Probab=99.92  E-value=1.7e-21  Score=183.52  Aligned_cols=405  Identities=20%  Similarity=0.252  Sum_probs=269.1

Q ss_pred             EEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCC---eEEEecCCCceEEeecCCcceeecccCC
Q psy13076         12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG---TVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus        12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~---~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      ++.|+++++.+. +..|.++...+ ..+++.|++|..+++++.+.|...   ++++++.||+|++||...+.+++.+...
T Consensus        24 fSnD~k~l~~~~-~~~V~VyS~~T-g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~  101 (792)
T KOG1963|consen   24 FSNDAKFLFLCT-GNFVKVYSTAT-GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN  101 (792)
T ss_pred             cccCCcEEEEee-CCEEEEEecch-HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC
Confidence            445999999755 55999999876 567889999999999999988644   5789999999999999887666554221


Q ss_pred             CCC-----------C----------------------------------------------ceEEeeCCCCCeEEEecCC
Q psy13076         89 QRG-----------Q----------------------------------------------PIVLGGDPKGKNFLYTNGN  111 (423)
Q Consensus        89 ~~~-----------~----------------------------------------------~~~~~~~~~~~~~~~~~~~  111 (423)
                      .+-           .                                              +..+...+.|.........
T Consensus       102 ~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~  181 (792)
T KOG1963|consen  102 LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMC  181 (792)
T ss_pred             CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEee
Confidence            100           0                                              0011111222222222223


Q ss_pred             eEEEEecCCCc----ccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC--CceeEEeeecCCCCCeeEEEECC
Q psy13076        112 SVIIRNIENPA----ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN--KEHILKNEFHPIGGPIKDIAWSP  185 (423)
Q Consensus       112 ~~~i~~~~~~~----~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~v~~v~~s~  185 (423)
                      ...+|..+.+.    ..+.-..|+-.+++.++||.++++|++..||.|.+|.--.  .+......++-+..+|++++|++
T Consensus       182 ~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~  261 (792)
T KOG1963|consen  182 KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS  261 (792)
T ss_pred             eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec
Confidence            34445544322    1123346777789999999999999999999999997332  22222334555668999999999


Q ss_pred             CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecc------
Q psy13076        186 DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ------  259 (423)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~------  259 (423)
                      +|.+++++|.  +...-.|..++++ ...++.-.++|..+.++|++.+ .+....|+.|.+...+.+..+.+..      
T Consensus       262 ~G~~LlSGG~--E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~-~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~  337 (792)
T KOG1963|consen  262 DGAYLLSGGR--EGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDL-YSLVLEDNQIHLIKASDLEIKSTISGIKPPT  337 (792)
T ss_pred             CCceEeeccc--ceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCe-EEEEecCceEEEEeccchhhhhhccCccCCC
Confidence            9999997654  4444556666666 6677888899999999999887 4445568888888765444332221      


Q ss_pred             -----ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc---------ccCCCeEEEEECCCCCeEEEEe
Q psy13076        260 -----EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP---------AHKGGVYAVAWKPDGTQLLTAS  325 (423)
Q Consensus       260 -----~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------~~~~~i~~l~~~~~~~~l~s~s  325 (423)
                           ......+.++++|.-+-++-.+..|.|.+||+.+.+.+.++...         .+.-.+++++.+..|++++|.-
T Consensus       338 ~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E  417 (792)
T KOG1963|consen  338 PSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE  417 (792)
T ss_pred             ccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence                 12345678899996667777888999999999877666554211         1233477888888899998852


Q ss_pred             --------CCC--cEEEEecCCcc----eeeeeeeCceeEeeEEE-E-EecCcEEEEEeCCCcEEEEecCCCCC------
Q psy13076        326 --------GDK--TCKLWDIETKS----AVSEFLMGNQVEDQQVS-C-LWQGDYLLTVSLSGFISYLDVNNPST------  383 (423)
Q Consensus       326 --------~d~--~i~iwd~~~~~----~i~~~~~~~~~~~~~~~-~-~~~g~~l~~~~~~~~i~~~~~~~~~~------  383 (423)
                              .||  .+|+|-.....    +.......+........ + .+.....++++.+|.+++|-.+....      
T Consensus       418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s  497 (792)
T KOG1963|consen  418 ARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSS  497 (792)
T ss_pred             eeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCcc
Confidence                    232  47788654332    22222222211111111 1 12344788999999999998854221      


Q ss_pred             ---ceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        384 ---PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       384 ---~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                         ...+-.-|..++++++|+.||. +++.|.|++|.+||..+
T Consensus       498 ~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  498 NWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDT  539 (792)
T ss_pred             ceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence               1122234889999999999995 55677788999999753

>KOG0646|consensus

Probab=99.92  E-value=2.6e-23  Score=182.28  Aligned_cols=266  Identities=20%  Similarity=0.242  Sum_probs=194.2

Q ss_pred             EccC-CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEE
Q psy13076        149 GDIS-GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF  227 (423)
Q Consensus       149 ~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  227 (423)
                      ++.| .++.+||+.++.......-......-..-+.  .+.+++++...+. ..++|.............-..++.+++-
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~rp-~l~vw~i~k~~~~~q~~v~Pg~v~al~s   89 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL--NNEYLLSAQLKRP-LLHVWEILKKDQVVQYIVLPGPVHALAS   89 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhh--chhheeeecccCc-cccccccCchhhhhhhcccccceeeeec
Confidence            4444 4599999998876654332110000000111  2355555544443 3445544333333322334457899999


Q ss_pred             ecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECC---------Ccccee
Q psy13076        228 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA---------SADLVS  298 (423)
Q Consensus       228 ~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~---------~~~~~~  298 (423)
                      +|.+.+ ++.|...+.|++|+.....+.....+|-..|+++.|+-||.+|++||.||.|++|.+.         +.+.+.
T Consensus        90 ~n~G~~-l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~  168 (476)
T KOG0646|consen   90 SNLGYF-LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH  168 (476)
T ss_pred             CCCceE-EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence            999876 6666689999999999888887888999999999999999999999999999999753         222333


Q ss_pred             cccccccCCCeEEEEECCC--CCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEE
Q psy13076        299 ELGNPAHKGGVYAVAWKPD--GTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL  376 (423)
Q Consensus       299 ~~~~~~~~~~i~~l~~~~~--~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~  376 (423)
                      .+  ..|...|+++...+-  ..+|+|+|.|.++|+||+..+.++.++..  +.....+...|.+..+.+|+.+|.|.+.
T Consensus       169 ~f--~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f--p~si~av~lDpae~~~yiGt~~G~I~~~  244 (476)
T KOG0646|consen  169 IF--SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF--PSSIKAVALDPAERVVYIGTEEGKIFQN  244 (476)
T ss_pred             ee--ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec--CCcceeEEEcccccEEEecCCcceEEee
Confidence            34  468999999988764  36899999999999999999988877643  3344556677788888999999999887


Q ss_pred             ecCCCC---------------CceEEeccCCC--ceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        377 DVNNPS---------------TPIRVIKGHNK--PITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       377 ~~~~~~---------------~~~~~~~~h~~--~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      ++....               ..+..+.||.+  +|+|++.+-|+..|++|+.||.|++||+.
T Consensus       245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            765422               12445779998  99999999999999999999999999974

>KOG0269|consensus

Probab=99.92  E-value=1.2e-23  Score=194.77  Aligned_cols=239  Identities=26%  Similarity=0.395  Sum_probs=180.1

Q ss_pred             EEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee
Q psy13076        135 NVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG  213 (423)
Q Consensus       135 ~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (423)
                      ..+.|+. +.+++||++..|.|.+||+...-  .                   .                      +.+.
T Consensus        91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--r-------------------n----------------------k~l~  127 (839)
T KOG0269|consen   91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSI--R-------------------N----------------------KLLT  127 (839)
T ss_pred             hhcccccchhhhheeecCCCcEEEEecCccc--c-------------------c----------------------hhhh
Confidence            3445554 57899999999999999985420  0                   0                      1112


Q ss_pred             cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCC-CCEEEEEEecCeEEEEECC
Q psy13076        214 EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS-GSHFASAGFDGKVFLYDGA  292 (423)
Q Consensus       214 ~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~s~s~dg~i~vwd~~  292 (423)
                      .+..|.+.+++++|++..+.++++||+|++|++||.+.-+...+.....+.|+.++|+|. +.+|+++...|.+.+||++
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence            234577788899999998899999999999999998876666666777888999999996 5578999999999999998


Q ss_pred             CccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcE-EEEEe--C
Q psy13076        293 SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY-LLTVS--L  369 (423)
Q Consensus       293 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~-l~~~~--~  369 (423)
                      ...... ++..+|++.|.++.|+|++.+|||||.|++|+|||..+.+...............+.-.|...+ |++.+  .
T Consensus       208 qp~r~~-~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~  286 (839)
T KOG0269|consen  208 QPDRCE-KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVV  286 (839)
T ss_pred             CchhHH-HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccc
Confidence            766432 2336899999999999999999999999999999998654422221111111112222233334 44444  3


Q ss_pred             CCcEEEEecCCCCCceEEeccCCCceeEEEecC-CCCeEEEecCCCcEE
Q psy13076        370 SGFISYLDVNNPSTPIRVIKGHNKPITALALSP-DRGTVFTGSHDGFIT  417 (423)
Q Consensus       370 ~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp-~~~~l~s~s~D~~i~  417 (423)
                      +-.|++||++-+-.|.+.+.-|...++.++|-. |-..|.++|.|++|.
T Consensus       287 dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  287 DTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             cceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            568999999999899999999999999999976 444678999999874

>KOG0650|consensus

Probab=99.92  E-value=1.2e-23  Score=189.45  Aligned_cols=274  Identities=21%  Similarity=0.337  Sum_probs=205.9

Q ss_pred             cccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeE-EEEEcCCceeeE
Q psy13076        124 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM-VVVGEGRERFGH  202 (423)
Q Consensus       124 ~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~-~~~~~~~~~~~~  202 (423)
                      .-+|.||++.|.++...|.|.+||+|+.||++|||.+.++.++....+.   +.|.+|+|+|.+..- ++++.+..  ..
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~~--~~  467 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGEC--VL  467 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEecCc--eE
Confidence            4568899999999999999999999999999999999999988776665   579999999986543 33333322  22


Q ss_pred             EEeecCCcceecccCCCcceeEEEEecCCCeeEEE----EeCCCeEEEEcCCC----ceeeeeccccccCeEEEEECCCC
Q psy13076        203 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIIT----GSEDNTIAVFEGPP----FKFKMTKQEHSRFVQAVRYSPSG  274 (423)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s----~s~d~~i~~~~~~~----~~~~~~~~~~~~~i~~l~~s~~g  274 (423)
                      +....-|..+..-...             . .+++    ...+..+..|.-..    ..-......|...|..+.|+.+|
T Consensus       468 ivnp~~G~~~e~~~t~-------------e-ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG  533 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTK-------------E-LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG  533 (733)
T ss_pred             EeCccccchhhhcchh-------------h-hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence            3333333222111100             0 0111    12345667775321    11122345678889999999999


Q ss_pred             CEEEEEEecC---eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeE
Q psy13076        275 SHFASAGFDG---KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVE  351 (423)
Q Consensus       275 ~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~  351 (423)
                      .||++...++   .|.|.+++.......+.  ...+.+.++.|+|...+|+.++. ..|||||+..+.+++++..+.. .
T Consensus       534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~--kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k-w  609 (733)
T KOG0650|consen  534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFR--KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK-W  609 (733)
T ss_pred             ceEEEeccCCCcceEEEEecccccccCchh--hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe-e
Confidence            9999977653   68888887655443342  34577899999999999999876 5699999998888777654433 3


Q ss_pred             eeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        352 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       352 ~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      ...++..+.|+.|+.++.++.+..+|+.-...+.+.++-|.+.|++++|++.-.+++||+.||++.++.
T Consensus       610 iS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  610 ISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             eeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            456778889999999999999999999988888999999999999999999999999999999998874

>KOG0646|consensus

Probab=99.92  E-value=4e-23  Score=181.16  Aligned_cols=288  Identities=17%  Similarity=0.205  Sum_probs=207.8

Q ss_pred             CEEEEEecc-ceEEEEeccCCCCceeecccc-cCceeEEEEeCCCCeEEEe-cCCCceEEeecCCcceeecccCCCCCCc
Q psy13076         17 DYLLTVSLS-GFISYLDVNNPSTPIRVIKGH-NKPITALALSPDRGTVFTG-SHDGFITRWNAKTEYIFATLPRTQRGQP   93 (423)
Q Consensus        17 ~~~~~~~~d-g~i~~~d~~~~~~~~~~~~gh-~~~V~~l~~~~~~~~l~sg-~~D~~i~vW~~~~~~~~~~~~~~~~~~~   93 (423)
                      ..+.+.|.| .++.+||++++.... .++|- -..-.++..- ...+++++ .....+.+|.+....... ...-.++..
T Consensus         8 ~~~sssS~d~~~~~~~dl~TGt~~~-~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v   84 (476)
T KOG0646|consen    8 TVCSSSSFDPINCIVWDLRTGTSLL-QYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPV   84 (476)
T ss_pred             EEEeccCCCCcceeEEecCCCceeE-EecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccce
Confidence            345556666 459999999866544 66653 2222222222 22455554 456688999987654322 111235666


Q ss_pred             eEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeec
Q psy13076         94 IVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH  172 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  172 (423)
                      .++..+|.|..++.+ -...+.+|.+.+|.+..++..|=..|+++.|+-||.+++||+.||.|.+|++...         
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l---------  155 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL---------  155 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee---------
Confidence            778889999888877 5788999999999999999999999999999999999999999999999996321         


Q ss_pred             CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecC-CCeeEEEEeCCCeEEEEcCCC
Q psy13076        173 PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS-RPFRIITGSEDNTIAVFEGPP  251 (423)
Q Consensus       173 ~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~s~d~~i~~~~~~~  251 (423)
                                ++++...                  ..+.+..+..|.-+|+.+...+. .+-+++|+|.|+++++||...
T Consensus       156 ----------v~a~~~~------------------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~  207 (476)
T KOG0646|consen  156 ----------VSADNDH------------------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL  207 (476)
T ss_pred             ----------cccccCC------------------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence                      0111000                  11223334456667777666654 234699999999999999877


Q ss_pred             ceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc--ce------------ecccccccCC--CeEEEEEC
Q psy13076        252 FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LV------------SELGNPAHKG--GVYAVAWK  315 (423)
Q Consensus       252 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~--~~------------~~~~~~~~~~--~i~~l~~~  315 (423)
                      ..+..+. ..+..+.+++.+|-++.+..|+.+|.|.+.++....  ..            ......+|..  .|+|++.+
T Consensus       208 g~LLlti-~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais  286 (476)
T KOG0646|consen  208 GVLLLTI-TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS  286 (476)
T ss_pred             ceeeEEE-ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence            6655443 345678999999999999999999999988764322  00            0011235766  89999999


Q ss_pred             CCCCeEEEEeCCCcEEEEecCCcceeeeee
Q psy13076        316 PDGTQLLTASGDKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       316 ~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~  345 (423)
                      -||..|++|+.||+++|||+.+.+++++..
T Consensus       287 ~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  287 TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             cCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            999999999999999999999999988765

>KOG0267|consensus

Probab=99.92  E-value=5.1e-25  Score=202.37  Aligned_cols=229  Identities=25%  Similarity=0.464  Sum_probs=186.4

Q ss_pred             CEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEE
Q psy13076         17 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVL   96 (423)
Q Consensus        17 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~   96 (423)
                      .++.....+-.+++||..       .+.+|...|.++..-..++.+++|++|..+-+|....                  
T Consensus         5 ~~~m~~~~~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k------------------   59 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK------------------   59 (825)
T ss_pred             cccceeeeeeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccC------------------
Confidence            344555666677777743       4567888888888866778899999999888887532                  


Q ss_pred             eeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCC
Q psy13076         97 GGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG  176 (423)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~  176 (423)
                                              +.....|.+|..+|-++.|+++...+++|+.+|+||+||++..+.+          
T Consensus        60 ------------------------p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v----------  105 (825)
T KOG0267|consen   60 ------------------------PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV----------  105 (825)
T ss_pred             ------------------------CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh----------
Confidence                                    1112236789999999999999999999999999999999754322          


Q ss_pred             CeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee
Q psy13076        177 PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM  256 (423)
Q Consensus       177 ~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~  256 (423)
                                                          +.+.+|...+.+++|+|.+.| +++++.|..+.+||.+...+..
T Consensus       106 ------------------------------------rtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~  148 (825)
T KOG0267|consen  106 ------------------------------------RTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSH  148 (825)
T ss_pred             ------------------------------------hhhhccccCcceeeeccceEE-eccccccccceehhhhccCcee
Confidence                                                123345555666667777765 5889999999999998777888


Q ss_pred             eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      .+..|...+..++|+|+|++++.|+.|..+++||...|+...++.  .|.+.+..+.|+|..-+|++||.|+++++||++
T Consensus       149 ~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  149 TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             eecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccc
Confidence            888899999999999999999999999999999999999988874  588999999999999999999999999999999


Q ss_pred             Ccceeee
Q psy13076        337 TKSAVSE  343 (423)
Q Consensus       337 ~~~~i~~  343 (423)
                      +.+.+..
T Consensus       227 tfe~I~s  233 (825)
T KOG0267|consen  227 TFEVISS  233 (825)
T ss_pred             eeEEeec
Confidence            8766543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.8e-21  Score=176.44  Aligned_cols=269  Identities=14%  Similarity=0.161  Sum_probs=189.1

Q ss_pred             CEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCccee
Q psy13076        144 FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN  223 (423)
Q Consensus       144 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  223 (423)
                      ..++|++.|+.+++||..+.+.......   ...+..++|+|+++.+++++... ....+|+..++.....+..+. .+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~---~~~~~~l~~~~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~~~-~~~   76 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPV---GQRPRGITLSKDGKLLYVCASDS-DTIQVIDLATGEVIGTLPSGP-DPE   76 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEEC---CCCCCceEECCCCCEEEEEECCC-CeEEEEECCCCcEEEeccCCC-Ccc
Confidence            5788999999999999987765443322   23367899999999876655433 334566666666555554433 346


Q ss_pred             EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC-eEEEEECCCccceecccc
Q psy13076        224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG-KVFLYDGASADLVSELGN  302 (423)
Q Consensus       224 ~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg-~i~vwd~~~~~~~~~~~~  302 (423)
                      .+.++|++...++++..++.+++||............ ...+..++|+|+|+++++++.++ .+.+||..+++....+. 
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-  154 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-  154 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-
Confidence            7889999987667777889999999876554433322 23357899999999999988775 46778988776654432 


Q ss_pred             cccCCCeEEEEECCCCCeEEEE-eCCCcEEEEecCCcceeeeeeeCc------eeEeeEEEEEecCcEEEE-EeCCCcEE
Q psy13076        303 PAHKGGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAVSEFLMGN------QVEDQQVSCLWQGDYLLT-VSLSGFIS  374 (423)
Q Consensus       303 ~~~~~~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~~------~~~~~~~~~~~~g~~l~~-~~~~~~i~  374 (423)
                        ....+..++|+|++++|+.+ ..++.|++||+.+++.+..+....      ......+...++|+++.. ...++.+.
T Consensus       155 --~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~  232 (300)
T TIGR03866       155 --VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA  232 (300)
T ss_pred             --cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence              22345789999999988554 468999999999988766553211      111223455678888544 44567899


Q ss_pred             EEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe-cCCCcEEEeeCCC
Q psy13076        375 YLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG-SHDGFITRWNAKT  423 (423)
Q Consensus       375 ~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~-s~D~~i~~W~~~~  423 (423)
                      +||..+.+. .... .+...+++++|+|++++|+++ +.++.|++||+++
T Consensus       233 v~d~~~~~~-~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       233 VVDAKTYEV-LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             EEECCCCcE-EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            999976533 2222 344579999999999999876 5699999999864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055|consensus

Probab=99.92  E-value=9.9e-23  Score=178.38  Aligned_cols=289  Identities=15%  Similarity=0.220  Sum_probs=205.5

Q ss_pred             cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc
Q psy13076         47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI  126 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  126 (423)
                      .++|+++.|+|..++|++++.|++++++-+..+.-                                       + .+..
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N---------------------------------------~-~lqS  252 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN---------------------------------------P-KLQS  252 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccC---------------------------------------h-hhee
Confidence            57999999999999999999999999998764210                                       0 0001


Q ss_pred             ccCCcceEEEEEECCCCC-EEEEEccCCcEEEEEcCCCceeEEeeecCC-CCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        127 YTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKEHILKNEFHPI-GGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       127 ~~~h~~~i~~~~~sp~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      +.--..+|.+.+|+|+|. .+++++.......||+++.+........++ ...+.....+|++++++..|..  .+.++.
T Consensus       253 ~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~--G~I~lL  330 (514)
T KOG2055|consen  253 IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN--GHIHLL  330 (514)
T ss_pred             eeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC--ceEEee
Confidence            111235788999999999 899999999999999987654332222222 2346678889999988887643  233444


Q ss_pred             eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccc-cCeEEEEECCCCCEEEEEEec
Q psy13076        205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS-RFVQAVRYSPSGSHFASAGFD  283 (423)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~s~s~d  283 (423)
                      ...++..+..++. ...+..+.|+.++. .+++++.+|.+++|+.+...+........ -.-++++.+++|.|||+||..
T Consensus       331 hakT~eli~s~Ki-eG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~  408 (514)
T KOG2055|consen  331 HAKTKELITSFKI-EGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS  408 (514)
T ss_pred             hhhhhhhhheeee-ccEEeeEEEecCCc-EEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence            4445555554443 34678888997775 47777788999999988776655544322 234678899999999999999


Q ss_pred             CeEEEEECCC------ccceecccccccCCCeEEEEECCCCCeEEEEeC--CCcEEEEecCCcceeeeeeeCceeEeeEE
Q psy13076        284 GKVFLYDGAS------ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG--DKTCKLWDIETKSAVSEFLMGNQVEDQQV  355 (423)
Q Consensus       284 g~i~vwd~~~------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~--d~~i~iwd~~~~~~i~~~~~~~~~~~~~~  355 (423)
                      |.|.|||..+      .+.+..+.+  -...|++++|+|+.+.|+.+|.  +..+|+--+.+....+.|           
T Consensus       409 GiVNIYd~~s~~~s~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNf-----------  475 (514)
T KOG2055|consen  409 GIVNIYDGNSCFASTNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNF-----------  475 (514)
T ss_pred             ceEEEeccchhhccCCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccC-----------
Confidence            9999999654      334444432  4567999999999999988765  456777666554332221           


Q ss_pred             EEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        356 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       356 ~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                                             .+...    ..   +.|+|++|||.+.+|+.|-.+|.+.+|.+.
T Consensus       476 -----------------------P~~n~----~v---g~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  476 -----------------------PTSNT----KV---GHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             -----------------------CCCCC----cc---cceEEEEecCCCceEEeecCCCceeeEeec
Confidence                                   11111    12   349999999999999999999999999863

>KOG1274|consensus

Probab=99.92  E-value=4.9e-22  Score=187.61  Aligned_cols=271  Identities=20%  Similarity=0.270  Sum_probs=197.1

Q ss_pred             ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc
Q psy13076         44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI  123 (423)
Q Consensus        44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  123 (423)
                      -+|+..-+.|+|.|+|..|.+++.||.||+|+..+-.                                      +.|+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~--------------------------------------e~P~t   51 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE--------------------------------------EEPET   51 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc--------------------------------------cCCch
Confidence            3699999999999999999999999999999875421                                      11111


Q ss_pred             cccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076        124 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV  203 (423)
Q Consensus       124 ~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~  203 (423)
                      +..   |...|.+++-  .+.+|++|+.+++|.+|...+.+.--.  +....-++++++|+.+|+.              
T Consensus        52 i~~---~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~i--L~Rftlp~r~~~v~g~g~~--------------  110 (933)
T KOG1274|consen   52 IDI---SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTI--LARFTLPIRDLAVSGSGKM--------------  110 (933)
T ss_pred             hhc---cCceeEEEee--cccceEEeeccceEEEeeCCCCCccce--eeeeeccceEEEEecCCcE--------------
Confidence            111   3445555543  455999999999999999876543200  0011133445555544443              


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD  283 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d  283 (423)
                                                     ++.|+.|-.|++-+.........+.+|..+|.++.|+|++.+||+.+.|
T Consensus       111 -------------------------------iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d  159 (933)
T KOG1274|consen  111 -------------------------------IAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD  159 (933)
T ss_pred             -------------------------------EEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC
Confidence                                           5566677777777666556666788999999999999999999999999


Q ss_pred             CeEEEEECCCccceeccccc------ccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCcee-EeeEEE
Q psy13076        284 GKVFLYDGASADLVSELGNP------AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQV-EDQQVS  356 (423)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~------~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~-~~~~~~  356 (423)
                      |.|++||+.++.+...+...      .....+..++|+|+|..|+..+.|+.|++|+....+....+...... ....+.
T Consensus       160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~  239 (933)
T KOG1274|consen  160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ  239 (933)
T ss_pred             ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE
Confidence            99999999998877665421      11345678999999888888889999999999988766555332221 133445


Q ss_pred             EEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEE
Q psy13076        357 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFT  409 (423)
Q Consensus       357 ~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s  409 (423)
                      .+|.|+||++++.+|.|.+||+.+.+.     +-....|.+++|.|+++-|-.
T Consensus       240 wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  240 WSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITL  287 (933)
T ss_pred             EcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEE
Confidence            567899999999999999999987332     223467999999999887643

>KOG1036|consensus

Probab=99.92  E-value=1.3e-22  Score=169.26  Aligned_cols=238  Identities=19%  Similarity=0.342  Sum_probs=175.5

Q ss_pred             cceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc
Q psy13076        131 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT  210 (423)
Q Consensus       131 ~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (423)
                      ...|+++.|+|.+..|+.++.||++++||+...+...  .+                                       
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--~~---------------------------------------   51 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--KF---------------------------------------   51 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--he---------------------------------------
Confidence            4679999999999999999999999999986542211  11                                       


Q ss_pred             ceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEE
Q psy13076        211 SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD  290 (423)
Q Consensus       211 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd  290 (423)
                            .+..++.+|+|.+..  .+++|+.||.|+.+|..... ......|...++++.+++-...+++||+|+.|++||
T Consensus        52 ------~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD  122 (323)
T KOG1036|consen   52 ------KHGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWD  122 (323)
T ss_pred             ------ecCCceeeeeccCCc--eEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEe
Confidence                  122344555555422  37889999999999976544 234567899999999999888999999999999999


Q ss_pred             CCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeee-eeCceeEeeEEEEEecCcEEEEEeC
Q psy13076        291 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF-LMGNQVEDQQVSCLWQGDYLLTVSL  369 (423)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~-~~~~~~~~~~~~~~~~g~~l~~~~~  369 (423)
                      .+.......+.   ....|.++..  .++.|+.|+.|..+.+||+++....... .-+-+.....+.+.|+++-.++++.
T Consensus       123 ~R~~~~~~~~d---~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi  197 (323)
T KOG1036|consen  123 PRNKVVVGTFD---QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI  197 (323)
T ss_pred             ccccccccccc---cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee
Confidence            98754444443   2346777766  4678999999999999999986543211 1112345566777889999999999


Q ss_pred             CCcEEEEecCCCC---CceEEeccCCC---------ceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        370 SGFISYLDVNNPS---TPIRVIKGHNK---------PITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       370 ~~~i~~~~~~~~~---~~~~~~~~h~~---------~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      +|.+.+=...+.+   .....++-|..         ||++|+|+|--+.|+|||.||.|.+||+.+
T Consensus       198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence            9987553333321   11234555543         899999999999999999999999999753

>KOG0267|consensus

Probab=99.91  E-value=1.5e-24  Score=199.35  Aligned_cols=222  Identities=23%  Similarity=0.400  Sum_probs=187.5

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCce
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPI   94 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~   94 (423)
                      -++.+++|+.|..+.||....+ .++..|.||..+|.+|.|+++..+|++|+.||+||+||++..+++            
T Consensus        39 s~r~~~~Gg~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v------------  105 (825)
T KOG0267|consen   39 SSRSLVTGGEDEKVNLWAIGKP-NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV------------  105 (825)
T ss_pred             cceeeccCCCceeeccccccCC-chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh------------
Confidence            5789999999999999998764 456689999999999999999999999999999999999865433            


Q ss_pred             EEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCC
Q psy13076         95 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI  174 (423)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  174 (423)
                                                    +.+.||...+.++.|+|-+.|+|+|+.|+.+++||.+.+.+...  +.++
T Consensus       106 ------------------------------rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~--~~s~  153 (825)
T KOG0267|consen  106 ------------------------------RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT--YKSH  153 (825)
T ss_pred             ------------------------------hhhhccccCcceeeeccceEEeccccccccceehhhhccCceee--ecCC
Confidence                                          35678999999999999999999999999999999986655432  3334


Q ss_pred             CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee
Q psy13076        175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF  254 (423)
Q Consensus       175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~  254 (423)
                      ...+..++|+|+|++                                             ++.++.|.++++||....++
T Consensus       154 ~~vv~~l~lsP~Gr~---------------------------------------------v~~g~ed~tvki~d~~agk~  188 (825)
T KOG0267|consen  154 TRVVDVLRLSPDGRW---------------------------------------------VASGGEDNTVKIWDLTAGKL  188 (825)
T ss_pred             cceeEEEeecCCCce---------------------------------------------eeccCCcceeeeeccccccc
Confidence            556677777777664                                             44566789999999988888


Q ss_pred             eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCC
Q psy13076        255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       255 ~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                      ...+..|...+.++.|+|..-++++|+.|+.+++||+++.+.+....  .....|.+++|+|++..+.+|..+.
T Consensus       189 ~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~--~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  189 SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK--PETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC--CccCCceeeeecCCceeeecCchhh
Confidence            88899999999999999999999999999999999999888776653  2367899999999999988876543

>KOG0302|consensus

Probab=99.91  E-value=5.2e-23  Score=175.84  Aligned_cols=231  Identities=24%  Similarity=0.391  Sum_probs=171.1

Q ss_pred             CcccccccCCcceEEEEEECCCC--CEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        121 PAISDIYTEHSCAVNVAKYSPSG--FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                      |........|.+.++.++.++-+  .+.|+=+..|.|+||++...-...    ......+..   +              
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l----~~~~~~~~~---s--------------  199 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNAL----SEPGLEVKD---S--------------  199 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhh----cCccccccc---c--------------
Confidence            44445556788888888887754  466677788999999985321110    000001111   1              


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce--e-eeeccccccCeEEEEECCCCC
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK--F-KMTKQEHSRFVQAVRYSPSGS  275 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~--~-~~~~~~~~~~i~~l~~s~~g~  275 (423)
                               ....+....+|...-..++|+|...-.+++|..-+.|++|......  . ...+..|...|-.|+|||...
T Consensus       200 ---------~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~  270 (440)
T KOG0302|consen  200 ---------EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED  270 (440)
T ss_pred             ---------ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC
Confidence                     1122334456666677888998655568888888899999754322  1 234556888999999999865


Q ss_pred             -EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeE
Q psy13076        276 -HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQ  354 (423)
Q Consensus       276 -~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~  354 (423)
                       .|+++|.||+|+|||.+++..-..+..++|.+.|..++|+.+..+|++|++||+++|||+++.+               
T Consensus       271 ~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~---------------  335 (440)
T KOG0302|consen  271 GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK---------------  335 (440)
T ss_pred             ceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc---------------
Confidence             8999999999999999998554444447899999999999998999999999999999998643               


Q ss_pred             EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC-CeEEEecCCCcEEEeeCC
Q psy13076        355 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~-~~l~s~s~D~~i~~W~~~  422 (423)
                                                ..+|+..++-|..+|++|.|+|.. ..|+++|.|..|.+||++
T Consensus       336 --------------------------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  336 --------------------------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             --------------------------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence                                      135677888999999999999964 568889999999999985

>KOG1273|consensus

Probab=99.91  E-value=6.4e-22  Score=165.50  Aligned_cols=279  Identities=18%  Similarity=0.269  Sum_probs=184.7

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      -+..+++-|.+||.|..||.|-+||..+ ..+-++|.+|..||.+++||++|+.|+|+|.|..|++||+..+.+++.+..
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            4556666799999999999999999987 557788999999999999999999999999999999999998877665422


Q ss_pred             CCCCCceEEeeCCCCCe-EEE-ecCCeEEEEecCCCccccccc----CCc-ceEEEEEECCCCCEEEEEccCCcEEEEEc
Q psy13076         88 TQRGQPIVLGGDPKGKN-FLY-TNGNSVIIRNIENPAISDIYT----EHS-CAVNVAKYSPSGFYIASGDISGKVRIWDT  160 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~-~~~-~~~~~~~i~~~~~~~~~~~~~----~h~-~~i~~~~~sp~~~~l~s~~~d~~i~vwd~  160 (423)
                        ......+.++|..++ ++. -....-.+-++.+++.. .+.    +.. ......-|.+.|+|+++|...|.+.++|.
T Consensus       106 --~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  106 --DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             --cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence              122223445554322 222 22222233333322111 111    111 11222358899999999999999999998


Q ss_pred             CCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC
Q psy13076        161 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE  240 (423)
Q Consensus       161 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~  240 (423)
                      ++.++........ ...|..+.|+..                                            +.+ ++.-+.
T Consensus       183 ~t~e~vas~rits-~~~IK~I~~s~~--------------------------------------------g~~-liiNts  216 (405)
T KOG1273|consen  183 ETLECVASFRITS-VQAIKQIIVSRK--------------------------------------------GRF-LIINTS  216 (405)
T ss_pred             chheeeeeeeech-heeeeEEEEecc--------------------------------------------CcE-EEEecC
Confidence            8776543322211 122333444333                                            333 455566


Q ss_pred             CCeEEEEcCCCceee---------eecc--ccccCeEEEEECCCCCEEEEEEe-cCeEEEEECCCccceecccccccCCC
Q psy13076        241 DNTIAVFEGPPFKFK---------MTKQ--EHSRFVQAVRYSPSGSHFASAGF-DGKVFLYDGASADLVSELGNPAHKGG  308 (423)
Q Consensus       241 d~~i~~~~~~~~~~~---------~~~~--~~~~~i~~l~~s~~g~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~  308 (423)
                      |+.|+.|+.......         ..++  ..+..-.+++|+.+|.|+++|+. ...++||....|.+++.+... ....
T Consensus       217 DRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~-kgE~  295 (405)
T KOG1273|consen  217 DRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT-KGEE  295 (405)
T ss_pred             CceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC-chhh
Confidence            778888875421100         1111  11223457899999999988774 567999999999998877432 1134


Q ss_pred             eEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        309 VYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       309 i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      ..++.|+|-...+++- ..|.+++|.....
T Consensus       296 l~DV~whp~rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  296 LLDVNWHPVRPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             eeecccccceeeeeec-cCCceEEEEeecc
Confidence            6789999998888887 6789999986543

>KOG0270|consensus

Probab=99.90  E-value=1.7e-22  Score=176.20  Aligned_cols=237  Identities=19%  Similarity=0.270  Sum_probs=182.9

Q ss_pred             CCEEEEEeccceEEEEecc--CCCCceeecc------------------cccCceeEEEEeCC-CCeEEEecCCCceEEe
Q psy13076         16 GDYLLTVSLSGFISYLDVN--NPSTPIRVIK------------------GHNKPITALALSPD-RGTVFTGSHDGFITRW   74 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~--~~~~~~~~~~------------------gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW   74 (423)
                      |.|+|.|..|-.|.|||++  ++-.|..+|.                  ||++.|..|+|+.. ...|||||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            7899999999999999976  3344554543                  79999999999996 4579999999999999


Q ss_pred             ecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCC
Q psy13076         75 NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISG  153 (423)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~  153 (423)
                      |+.++++..                                          ++..|...|.++.|+| .+.++++|++|+
T Consensus       272 D~~~g~p~~------------------------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~  309 (463)
T KOG0270|consen  272 DVDTGKPKS------------------------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDG  309 (463)
T ss_pred             EcCCCCcce------------------------------------------ehhhcCCceeEEEecCCCceEEEeccccc
Confidence            998875433                                          2345778999999999 678999999999


Q ss_pred             cEEEEEcCCCce-eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCC
Q psy13076        154 KVRIWDTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP  232 (423)
Q Consensus       154 ~i~vwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  232 (423)
                      ++++.|.+.... .....+   .+.|..++|.|.....+.++...+.....-....++++..++.|..+|.++++++..+
T Consensus       310 ~V~l~D~R~~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p  386 (463)
T KOG0270|consen  310 TVALKDCRDPSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP  386 (463)
T ss_pred             eEEeeeccCccccCceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC
Confidence            999999885322 122233   3679999999998888888776665544445566789999999999999999999999


Q ss_pred             eeEEEEeCCCeEEEEcCCCceeeeec--cccccCeEEEEECCCCC-EEEEEEecCeEEEEECCCccce
Q psy13076        233 FRIITGSEDNTIAVFEGPPFKFKMTK--QEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASADLV  297 (423)
Q Consensus       233 ~~~~s~s~d~~i~~~~~~~~~~~~~~--~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~~~  297 (423)
                      ..+++++.|+.+++|+..........  ........|.++.|+-. .++.|+..+.+++||..+...+
T Consensus       387 ~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  387 GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            99999999999999986432221111  11112355667778765 5677888888999998776543

>KOG2048|consensus

Probab=99.90  E-value=4e-20  Score=169.38  Aligned_cols=366  Identities=14%  Similarity=0.152  Sum_probs=252.7

Q ss_pred             CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc-CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc
Q psy13076         48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP-RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI  126 (423)
Q Consensus        48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  126 (423)
                      ++|.++||+.+...||.+=.||.|-+||+...-....+. .......=.+.+.+.+++|-......+.-||+.+.+....
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~  105 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYN  105 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEE
Confidence            589999999999999999999999999998765443332 2222223345666666666556677888999999888888


Q ss_pred             ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEee
Q psy13076        127 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS  206 (423)
Q Consensus       127 ~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~  206 (423)
                      +..-.+.|++++.+|.+..++.|+.||.+...+...++......+....+++.+++|+|++..++..+.+  ...++|+.
T Consensus       106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D--g~Iriwd~  183 (691)
T KOG2048|consen  106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID--GVIRIWDV  183 (691)
T ss_pred             ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC--ceEEEEEc
Confidence            8878899999999999999999999998888888777666666666677899999999999887765543  23567777


Q ss_pred             cCCcceec-------ccC-CCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEE
Q psy13076        207 ETGTSVGE-------ISG-QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFA  278 (423)
Q Consensus       207 ~~~~~~~~-------~~~-~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~  278 (423)
                      ..+..+..       +.. ....+.++.|-.++  .+++|...|++..||....++......|...|.+++.++++.+++
T Consensus       184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf  261 (691)
T KOG2048|consen  184 KSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF  261 (691)
T ss_pred             CCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence            76665541       121 33346677766444  489999999999999888888888888999999999999999999


Q ss_pred             EEEecCeEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEE
Q psy13076        279 SAGFDGKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS  356 (423)
Q Consensus       279 s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~  356 (423)
                      +++.|+.|.-+...+.+.  +.......|...+.+++..++  .|++|+.|.++.+--....+...............+.
T Consensus       262 saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~  339 (691)
T KOG2048|consen  262 SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVS  339 (691)
T ss_pred             EccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceee
Confidence            999999999887665432  223334578888999998876  8999999999887655443221111000000000111


Q ss_pred             EEecCcEEEEEeCCCcEEEEecCCC----C----CceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        357 CLWQGDYLLTVSLSGFISYLDVNNP----S----TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       357 ~~~~g~~l~~~~~~~~i~~~~~~~~----~----~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      +. ..+++..--....+.+|.+...    +    ...+....-..-|.+.+.||+|++|+-+.- ...++|.+
T Consensus       340 ~a-~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L  410 (691)
T KOG2048|consen  340 VA-PENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRL  410 (691)
T ss_pred             cC-ccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEe
Confidence            11 1122222222333334433221    1    111212223356999999999999985542 23455544

>KOG1274|consensus

Probab=99.90  E-value=8.5e-22  Score=186.02  Aligned_cols=245  Identities=19%  Similarity=0.262  Sum_probs=184.5

Q ss_pred             cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076        128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       128 ~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      ..|+..-+.++|.|+|+++++++.|+.|++|+........        ..+   ..  .+.                   
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P--------~ti---~~--~g~-------------------   57 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP--------ETI---DI--SGE-------------------   57 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC--------chh---hc--cCc-------------------
Confidence            3688888999999999999999999999999965432110        000   00  111                   


Q ss_pred             CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEE
Q psy13076        208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF  287 (423)
Q Consensus       208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~  287 (423)
                                   .+.+++....   .+++++.++++..|..+.....-.+....-+++.++|+-+|+++|.||.|-.|+
T Consensus        58 -------------~v~~ia~~s~---~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK  121 (933)
T KOG1274|consen   58 -------------LVSSIACYSN---HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVK  121 (933)
T ss_pred             -------------eeEEEeeccc---ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEE
Confidence                         1222222211   488999999999998765543333334445688999999999999999999999


Q ss_pred             EEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCcee-------EeeEEEEEec
Q psy13076        288 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQV-------EDQQVSCLWQ  360 (423)
Q Consensus       288 vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~-------~~~~~~~~~~  360 (423)
                      +-++........+.  +|.+.|.++.|+|++++||+.+.||+|++||++++.+...+..-.+.       .....+-.|+
T Consensus       122 ~~~~~D~s~~~~lr--gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk  199 (933)
T KOG1274|consen  122 LLNLDDSSQEKVLR--GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK  199 (933)
T ss_pred             EEeccccchheeec--ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCC
Confidence            99998877766664  69999999999999999999999999999999998876655322211       1222333468


Q ss_pred             CcEEEEEeCCCcEEEEecCCCCCceEEec--cCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        361 GDYLLTVSLSGFISYLDVNNPSTPIRVIK--GHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       361 g~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      |..++....++.|++|+...-+. ...++  -|...+.++.|+|.|+|||+++.||.|.+||.+|
T Consensus       200 ~g~la~~~~d~~Vkvy~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  200 GGTLAVPPVDNTVKVYSRKGWEL-QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             CCeEEeeccCCeEEEEccCCcee-heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            88899999999999998876433 23333  3455599999999999999999999999999874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=5.9e-19  Score=167.29  Aligned_cols=372  Identities=27%  Similarity=0.455  Sum_probs=264.2

Q ss_pred             ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc-eeecccCCCC--CCceEEeeCCCCC-eEEE-ec-CCeEEE
Q psy13076         42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY-IFATLPRTQR--GQPIVLGGDPKGK-NFLY-TN-GNSVII  115 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~-~~~~-~~-~~~~~i  115 (423)
                      .+.+|...+.++.+.+.+..++.++.|+.+.+|+..... ....+.....  -...... .+++. .++. .. ...+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEEE
Confidence            466899999999999999999999999999999998775 4444433221  1222333 66666 3333 23 458899


Q ss_pred             EecCC-CcccccccCCcceEEEEEECCCCCEEEEEcc-CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEE
Q psy13076        116 RNIEN-PAISDIYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV  193 (423)
Q Consensus       116 ~~~~~-~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~  193 (423)
                      |+.+. ......+..|...|..+.|+|+++++++++. |+.+++|+.........  +..+...+.+++|+|++..+++.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST--LAGHTDPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe--eccCCCceEEEEEcCCcceEEEE
Confidence            99987 7777888999999999999999999999886 99999999987444332  23356789999999999833433


Q ss_pred             EcCCceeeEEEeecCCccee-cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee-eeeccccccCeEEEEEC
Q psy13076        194 GEGRERFGHVFMSETGTSVG-EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-KMTKQEHSRFVQAVRYS  271 (423)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~i~~l~~s  271 (423)
                       ...+....+|+...+.... .+..|.... ...|+|++. .+++++.|+.+++|+...... ......|...+.++.|+
T Consensus       217 -~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  293 (466)
T COG2319         217 -GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS  293 (466)
T ss_pred             -ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence             2223333466544455555 466666664 337888884 467899999999999764432 22225678889999999


Q ss_pred             CCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEE-eCCCcEEEEecCCcceeeeeeeCcee
Q psy13076        272 PSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAVSEFLMGNQV  350 (423)
Q Consensus       272 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~~~~  350 (423)
                      |++..+++++.|+.+.+|+..............|...+..+.|.+++..++.+ ..|+.+++|+............... 
T Consensus       294 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-  372 (466)
T COG2319         294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-  372 (466)
T ss_pred             CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-
Confidence            99988888999999999998877655544323566678999994343556655 6889999999988762222221111 


Q ss_pred             EeeEEEEEecCcEEEE-EeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        351 EDQQVSCLWQGDYLLT-VSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       351 ~~~~~~~~~~g~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                       ...+...+ ...+.. +..++.+.+|+........ ....+...+....+++++..+++++.+..+++|+..+
T Consensus       373 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         373 -VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLR-NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             -EEEEEECC-CCCEEEEecCCCceEEEecccCeeee-eccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence             22233333 233333 6788999999998754432 2222227899999999999999999999999998753

>KOG0322|consensus

Probab=99.90  E-value=2.2e-22  Score=164.28  Aligned_cols=289  Identities=19%  Similarity=0.310  Sum_probs=194.3

Q ss_pred             CCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEE
Q psy13076         36 PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVII  115 (423)
Q Consensus        36 ~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  115 (423)
                      |..|+++|++|.+.|+++.|..+++ |.+|..-|.|++|++++.+-...                               
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~-------------------------------   50 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPL-------------------------------   50 (323)
T ss_pred             CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchh-------------------------------
Confidence            5678999999999999999998776 88999999999999988542211                               


Q ss_pred             EecCCCccccccc-CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC-----CCCe
Q psy13076        116 RNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-----DNQR  189 (423)
Q Consensus       116 ~~~~~~~~~~~~~-~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-----~~~~  189 (423)
                                 +. .|...|+.++--|+ ..+.+-+.|+.+.+|++.....+....     -.++++.|.+     +++.
T Consensus        51 -----------~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~S-----i~~nslgFCrfSl~~~~k~  113 (323)
T KOG0322|consen   51 -----------IRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHS-----IVVNSLGFCRFSLVKKPKN  113 (323)
T ss_pred             -----------hhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEee-----eeccccccccceeccCCCc
Confidence                       12 24456777777776 568888999999999987644322111     2234444433     2111


Q ss_pred             ---EEEEEcCCceeeEEEeecCCcce--ecc----cCCCcceeEEEEec--CCCeeEEEEeCCCeEEEEcCCCc------
Q psy13076        190 ---MVVVGEGRERFGHVFMSETGTSV--GEI----SGQSKPINSCDFKP--SRPFRIITGSEDNTIAVFEGPPF------  252 (423)
Q Consensus       190 ---~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~i~~~~~~~--~~~~~~~s~s~d~~i~~~~~~~~------  252 (423)
                         ++.. .+++. -++...+.+...  ...    ......+++..+.-  ...+.+++|-++|.+.+||....      
T Consensus       114 ~eqll~y-p~rgs-de~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~  191 (323)
T KOG0322|consen  114 SEQLLEY-PSRGS-DETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL  191 (323)
T ss_pred             chhheec-CCccc-chhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecc
Confidence               1111 00000 001111111111  111    12233455554322  22355788889999999997664      


Q ss_pred             ----eeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCc--cc--eecccccccCCCeEEEEECCCCCeEEEE
Q psy13076        253 ----KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA--DL--VSELGNPAHKGGVYAVAWKPDGTQLLTA  324 (423)
Q Consensus       253 ----~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~--~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~  324 (423)
                          +.......|..++.++.+.+.-..=++|+.+..+..|.+.-.  .+  ..++.  .-+-++..+...||++.|+|+
T Consensus       192 ~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~--lknpGv~gvrIRpD~KIlATA  269 (323)
T KOG0322|consen  192 PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT--LKNPGVSGVRIRPDGKILATA  269 (323)
T ss_pred             ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE--ecCCCccceEEccCCcEEeec
Confidence                233345678899999999876555577888888888876532  21  11111  123457889999999999999


Q ss_pred             eCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC
Q psy13076        325 SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR  404 (423)
Q Consensus       325 s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~  404 (423)
                      +.|+.||+|.+++..                                            |+.+++-|++.|++++|+|+.
T Consensus       270 GWD~RiRVyswrtl~--------------------------------------------pLAVLkyHsagvn~vAfspd~  305 (323)
T KOG0322|consen  270 GWDHRIRVYSWRTLN--------------------------------------------PLAVLKYHSAGVNAVAFSPDC  305 (323)
T ss_pred             ccCCcEEEEEeccCC--------------------------------------------chhhhhhhhcceeEEEeCCCC
Confidence            999999999987653                                            356778899999999999999


Q ss_pred             CeEEEecCCCcEEEeeC
Q psy13076        405 GTVFTGSHDGFITRWNA  421 (423)
Q Consensus       405 ~~l~s~s~D~~i~~W~~  421 (423)
                      +.+|++|.|++|.+|++
T Consensus       306 ~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  306 ELMAAASKDARISLWKL  322 (323)
T ss_pred             chhhhccCCceEEeeec
Confidence            99999999999999986

>KOG1034|consensus

Probab=99.90  E-value=4.6e-23  Score=173.23  Aligned_cols=269  Identities=21%  Similarity=0.282  Sum_probs=189.5

Q ss_pred             ceeeEEEE--e----CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCc
Q psy13076          7 DQQVSCLW--Q----GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTE   79 (423)
Q Consensus         7 ~~~~~~~~--~----~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~   79 (423)
                      |--.+|.|  |    +=++|+|+.-|.|+++|+.. .+....++||..+|+.+.|.|.. ++|+++|+|.+||+||+++.
T Consensus        90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~  168 (385)
T KOG1034|consen   90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD  168 (385)
T ss_pred             cceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence            33456776  3    56899999999999999975 56788999999999999999976 68999999999999999997


Q ss_pred             ceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEE
Q psy13076         80 YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD  159 (423)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd  159 (423)
                      .++..+.                                       -+.||.+.|.++.|+++|.+++|++.|.+|++|+
T Consensus       169 ~Cv~VfG---------------------------------------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~  209 (385)
T KOG1034|consen  169 VCVAVFG---------------------------------------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWR  209 (385)
T ss_pred             eEEEEec---------------------------------------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence            7654331                                       1468999999999999999999999999999999


Q ss_pred             cCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe
Q psy13076        160 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS  239 (423)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s  239 (423)
                      +..++.....+        .+..|+|++...-.-.    ...++.+.      .....|...|.|+.|--  ++ +++-|
T Consensus       210 l~~~~f~~~lE--------~s~~~~~~~t~~pfpt----~~~~fp~f------st~diHrnyVDCvrw~g--d~-ilSks  268 (385)
T KOG1034|consen  210 LNVKEFKNKLE--------LSITYSPNKTTRPFPT----PKTHFPDF------STTDIHRNYVDCVRWFG--DF-ILSKS  268 (385)
T ss_pred             cChhHHhhhhh--------hhcccCCCCccCcCCc----cccccccc------cccccccchHHHHHHHh--hh-eeecc
Confidence            97554321111        2345666543210000    00000000      01224566677777664  33 77888


Q ss_pred             CCCeEEEEcCCCcee--------------eeeccccccCeE--EEEECCCCCEEEEEEecCeEEEEECCCccce--eccc
Q psy13076        240 EDNTIAVFEGPPFKF--------------KMTKQEHSRFVQ--AVRYSPSGSHFASAGFDGKVFLYDGASADLV--SELG  301 (423)
Q Consensus       240 ~d~~i~~~~~~~~~~--------------~~~~~~~~~~i~--~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~--~~~~  301 (423)
                      .++.|..|..-.+..              ...+......|.  ..+|.|-+++||.|.+.|.|.+||++..+..  .++.
T Consensus       269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~  348 (385)
T KOG1034|consen  269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT  348 (385)
T ss_pred             cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE
Confidence            899999996411111              111111222232  3466788999999999999999999876643  2232


Q ss_pred             ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        302 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       302 ~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      .......|...+|+.||..|+..++|++|--||.-
T Consensus       349 ~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  349 HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            22334568999999999999999999999989863

>KOG1538|consensus

Probab=99.90  E-value=2.2e-21  Score=177.16  Aligned_cols=397  Identities=17%  Similarity=0.216  Sum_probs=250.9

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      +-+++-|||..|+.|+.+ .+.++|++. +...++++||++.|.|++|+.+|..++||+.|..|.+|+-+-.-.+   ..
T Consensus        16 ~d~afkPDGsqL~lAAg~-rlliyD~nd-G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L---kY   90 (1081)
T KOG1538|consen   16 NDIAFKPDGTQLILAAGS-RLLVYDTSD-GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL---KY   90 (1081)
T ss_pred             heeEECCCCceEEEecCC-EEEEEeCCC-cccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee---ee
Confidence            457788899999986655 677999976 5678899999999999999999999999999999999987643222   22


Q ss_pred             CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeE
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL  167 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~  167 (423)
                      .+....-.+.+.|-...++.++=+..-+|..+.+.+.+.  .....+.+..|..||+|++-|-.+|+|.+-+-...+...
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~  168 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVK  168 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceE
Confidence            333444567888877777766655666777665544331  123567888999999999999999999998743333332


Q ss_pred             EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec--------CCcceecccCCCcceeEEEEecCCCeeEEEEe
Q psy13076        168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE--------TGTSVGEISGQSKPINSCDFKPSRPFRIITGS  239 (423)
Q Consensus       168 ~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s  239 (423)
                      .....+.+.+|.+++|+|...      .+......+.+|.        .|+.+..-..-.-...|+.+.+++.+ ++.|+
T Consensus       169 I~Rpgg~Nspiwsi~~~p~sg------~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy-~LiGG  241 (1081)
T KOG1538|consen  169 IERPGGSNSPIWSICWNPSSG------EGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEY-ILLGG  241 (1081)
T ss_pred             EeCCCCCCCCceEEEecCCCC------CCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcE-EEEcc
Confidence            223334567899999999642      1111111222222        22322222222335678899999998 55577


Q ss_pred             CCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc-----------------------
Q psy13076        240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL-----------------------  296 (423)
Q Consensus       240 ~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~-----------------------  296 (423)
                      .|+.+.+|.-. ....-+......+|..++..|++++++.|..||+|--|++-....                       
T Consensus       242 sdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi  320 (1081)
T KOG1538|consen  242 SDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLI  320 (1081)
T ss_pred             CCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHh
Confidence            89999999643 333445566778999999999999999999999998886321100                       


Q ss_pred             ----e--------ec-----------cccc-----ccCCC------------eEEEEECC---CCCeEEEEeCCCcEEEE
Q psy13076        297 ----V--------SE-----------LGNP-----AHKGG------------VYAVAWKP---DGTQLLTASGDKTCKLW  333 (423)
Q Consensus       297 ----~--------~~-----------~~~~-----~~~~~------------i~~l~~~~---~~~~l~s~s~d~~i~iw  333 (423)
                          .        ++           ++..     ..++.            +..+.+|-   -+++++. +.+..+..+
T Consensus       321 ~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl-CqekrLqCl  399 (1081)
T KOG1538|consen  321 TEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL-CQEKRLQCL  399 (1081)
T ss_pred             hcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEE-Ecccceeee
Confidence                0        00           0000     00000            00010000   1223333 456667777


Q ss_pred             ecCCcceeeeeeeCceeEeeEEEE-EecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecC
Q psy13076        334 DIETKSAVSEFLMGNQVEDQQVSC-LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH  412 (423)
Q Consensus       334 d~~~~~~i~~~~~~~~~~~~~~~~-~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~  412 (423)
                      |+..-+. +++.+..-.+-..+.. .+..+.++.|..+|.++..-+.+. .|+- +..-...|.|+..+..-+.|++..+
T Consensus       400 DF~Gvk~-ReW~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~-~PiL-l~~~~tAvrClDINA~R~kLAvVDD  476 (1081)
T KOG1538|consen  400 DFSGVKE-REWQMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNL-FPIL-LLKQATAVRCLDINASRKKLAVVDD  476 (1081)
T ss_pred             cccchhh-hhhhHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCC-chhh-eecccceeEEeeccCCcceEEEEcc
Confidence            7653221 1221111111111111 124567888988888755444442 2222 2233457999999999999999998


Q ss_pred             CCcEEEeeCCC
Q psy13076        413 DGFITRWNAKT  423 (423)
Q Consensus       413 D~~i~~W~~~~  423 (423)
                      .++..++|+.|
T Consensus       477 ~~~c~v~DI~t  487 (1081)
T KOG1538|consen  477 NDTCLVYDIDT  487 (1081)
T ss_pred             CCeEEEEEccC
Confidence            88888888765

>KOG4283|consensus

Probab=99.90  E-value=4.2e-22  Score=165.14  Aligned_cols=234  Identities=24%  Similarity=0.320  Sum_probs=170.1

Q ss_pred             ccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076        125 DIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV  203 (423)
Q Consensus       125 ~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~  203 (423)
                      +....|.+.|+++...| .|+|+++|+.||.|-+||+++........+.     ...+         ..++         
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-----~k~~---------c~v~---------   93 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-----AKHK---------CIVA---------   93 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-----ehee---------eecc---------
Confidence            34456889999999998 6999999999999999999764321110000     0000         0000         


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC---CEEEEE
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG---SHFASA  280 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g---~~l~s~  280 (423)
                              ...-.+|.-.|.++.|-|-+.-++.+++-|.++++||..+.+....+. .++.|.+-++||-.   .++|+|
T Consensus        94 --------~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~g  164 (397)
T KOG4283|consen   94 --------KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAG  164 (397)
T ss_pred             --------ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEe
Confidence                    011224556788888888877789999999999999987765443332 23446666777743   478888


Q ss_pred             EecCeEEEEECCCccceecccccccCCCeEEEEECCCCCe-EEEEeCCCcEEEEecCCc-ceeeeeeeCceeEeeEEEEE
Q psy13076        281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ-LLTASGDKTCKLWDIETK-SAVSEFLMGNQVEDQQVSCL  358 (423)
Q Consensus       281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-l~s~s~d~~i~iwd~~~~-~~i~~~~~~~~~~~~~~~~~  358 (423)
                      ..|-+|++-|+++|.....++  +|.+.|.++.|+|...+ |++|+.||.||+||++.. .+...+..++..        
T Consensus       165 tr~~~VrLCDi~SGs~sH~Ls--GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k--------  234 (397)
T KOG4283|consen  165 TRDVQVRLCDIASGSFSHTLS--GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK--------  234 (397)
T ss_pred             cCCCcEEEEeccCCcceeeec--cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc--------
Confidence            899999999999999888885  79999999999998765 678999999999999764 333333221110        


Q ss_pred             ecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       359 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                                            -.+.++.-..|.+.|+.++|+.|+.++++.+.|..+++|+.+
T Consensus       235 ----------------------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  235 ----------------------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             ----------------------cCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence                                  011223346899999999999999999999999999999864

>KOG1445|consensus

Probab=99.90  E-value=3.7e-21  Score=174.78  Aligned_cols=136  Identities=20%  Similarity=0.219  Sum_probs=101.3

Q ss_pred             eEEEEeccCC---CCceeecccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcce--e-eccc--CCCCCCceEEe
Q psy13076         27 FISYLDVNNP---STPIRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYI--F-ATLP--RTQRGQPIVLG   97 (423)
Q Consensus        27 ~i~~~d~~~~---~~~~~~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~--~-~~~~--~~~~~~~~~~~   97 (423)
                      .+.++-+...   .+.+..+.+|.+.|+.+.|+| .+.+|+|||.|..||+|.+-.+..  + ....  .......-.+.
T Consensus        56 ~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~  135 (1012)
T KOG1445|consen   56 KLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLR  135 (1012)
T ss_pred             eEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEee
Confidence            4555554322   223456789999999999999 566899999999999999874321  1 0000  00011112466


Q ss_pred             eCCCCC-eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076         98 GDPKGK-NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        98 ~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~  162 (423)
                      ++|... +++......+.+||+.+++..-.+.+|...|.+..|+.||+.+++++.|..|+|||-+.
T Consensus       136 fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  136 FHPTADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             cccCcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            777554 44445678999999999999999999999999999999999999999999999999764

>KOG1036|consensus

Probab=99.90  E-value=9e-21  Score=158.34  Aligned_cols=268  Identities=22%  Similarity=0.232  Sum_probs=187.3

Q ss_pred             CcccceeeEEEE--eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc
Q psy13076          3 NQVEDQQVSCLW--QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY   80 (423)
Q Consensus         3 ~~~~~~~~~~~~--~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~   80 (423)
                      |..+|+--.+.+  .+..|+++|=||+++++|.... .....| -|..|+.+++|-+ ...+++|+-||.||..|++++.
T Consensus        10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence            334555555554  5677777899999999998753 323233 3899999999987 4568999999999999998753


Q ss_pred             eeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEc
Q psy13076         81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT  160 (423)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~  160 (423)
                      ..                                           .+..|...|.++.+.+-...+++|+.|++|++||.
T Consensus        87 ~~-------------------------------------------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~  123 (323)
T KOG1036|consen   87 ED-------------------------------------------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDP  123 (323)
T ss_pred             ce-------------------------------------------eeccCCCceEEEEeeccCCeEEEcccCccEEEEec
Confidence            21                                           12348889999999997788999999999999998


Q ss_pred             CCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee--cccCCCcceeEEEEecCCCeeEEEE
Q psy13076        161 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG--EISGQSKPINSCDFKPSRPFRIITG  238 (423)
Q Consensus       161 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~s~  238 (423)
                      ........  +. .+..|.++..+  +..|++++.++  ...+|+...-....  .-..-.-.+.++++.|++.- .+.+
T Consensus       124 R~~~~~~~--~d-~~kkVy~~~v~--g~~LvVg~~~r--~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~s  195 (323)
T KOG1036|consen  124 RNKVVVGT--FD-QGKKVYCMDVS--GNRLVVGTSDR--KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVS  195 (323)
T ss_pred             cccccccc--cc-cCceEEEEecc--CCEEEEeecCc--eEEEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEE
Confidence            76332221  11 12356555544  45566655443  23445433221111  11222345788899996554 7888


Q ss_pred             eCCCeEEEEcCCCc----eeeeecccc---------ccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccccc
Q psy13076        239 SEDNTIAVFEGPPF----KFKMTKQEH---------SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH  305 (423)
Q Consensus       239 s~d~~i~~~~~~~~----~~~~~~~~~---------~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  305 (423)
                      |-||.+.+=...+.    ..+..+..|         -.+|++++|+|--+.|+||+.||.|.+||..+.+.+.++.  ..
T Consensus       196 SieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~--~~  273 (323)
T KOG1036|consen  196 SIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA--KY  273 (323)
T ss_pred             eecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc--CC
Confidence            99999887432221    112222233         2468999999999999999999999999999998888774  34


Q ss_pred             CCCeEEEEECCCCCeEEEEeC
Q psy13076        306 KGGVYAVAWKPDGTQLLTASG  326 (423)
Q Consensus       306 ~~~i~~l~~~~~~~~l~s~s~  326 (423)
                      ...|.+++|+.+|..||.++.
T Consensus       274 ~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  274 ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CCceEEEEeccCCCeEEEEec
Confidence            677999999999999999875

>KOG0269|consensus

Probab=99.90  E-value=1.2e-22  Score=188.20  Aligned_cols=230  Identities=17%  Similarity=0.320  Sum_probs=177.4

Q ss_pred             eCCEEEEEeccceEEEEeccC--CCCceeecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeecccCCC-C
Q psy13076         15 QGDYLLTVSLSGFISYLDVNN--PSTPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFATLPRTQ-R   90 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~--~~~~~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~-~   90 (423)
                      +..+||+|+..|.|.+||+..  ..+.++.|..|...|+++.|++.. .+|+|||+||+||.||+...+...++.... .
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES  178 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES  178 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence            578999999999999999975  456677999999999999999965 579999999999999998765444433222 2


Q ss_pred             CCceEEeeCCCCCeEEE-ecCCeEEEEecCCC-cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         91 GQPIVLGGDPKGKNFLY-TNGNSVIIRNIENP-AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        91 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                      ...+.+...+ +..|+. ..++.+++||+..+ .+...+..|.++|.++.|+|++.+||||+.|+.|+|||+.+.+....
T Consensus       179 iRDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~  257 (839)
T KOG0269|consen  179 IRDVKFSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK  257 (839)
T ss_pred             hhceeeccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce
Confidence            2344444333 445554 45678999999866 45678889999999999999999999999999999999976543332


Q ss_pred             eeecCCCCCeeEEEECCCCCe-EEEEEcCCceeeEEEeecCCc-ceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076        169 NEFHPIGGPIKDIAWSPDNQR-MVVVGEGRERFGHVFMSETGT-SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV  246 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~  246 (423)
                      ..... ..++..|+|.|+.++ |++++...+...++|+..... .-..+..|...++.+.|.......+.+++.|+++..
T Consensus       258 ~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  258 HTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             eEEee-cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence            22222 468999999998665 555666677778888876654 334566788888999998877777899999998754

>KOG0639|consensus

Probab=99.89  E-value=1.2e-21  Score=173.40  Aligned_cols=271  Identities=18%  Similarity=0.322  Sum_probs=204.4

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCC--ceeecc--cccCceeEEEEeCCCCeEEEecCCCceEEeecCCc--ceee
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPST--PIRVIK--GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTE--YIFA   83 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~~~--gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~--~~~~   83 (423)
                      ++|+-.-+++.+|+ -|.|.|||+..+..  |+.-|.  .-..-|.+|...||++.|++|++-.++-|||+..-  ++..
T Consensus       425 vtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprika  503 (705)
T KOG0639|consen  425 VTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA  503 (705)
T ss_pred             EEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhh
Confidence            34555788888865 57999999975432  333332  23457899999999999999999999999998753  2333


Q ss_pred             cccCCCCCC-ceEEeeCCCCCeEE-EecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcC
Q psy13076         84 TLPRTQRGQ-PIVLGGDPKGKNFL-YTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV  161 (423)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~  161 (423)
                      .+..  .+. -.+++-+|+.+..+ ++.+..+.|||+.+..++..|.||++.+.+|.+++||..|=||+-|.+||-||++
T Consensus       504 elts--sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlr  581 (705)
T KOG0639|consen  504 ELTS--SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR  581 (705)
T ss_pred             hcCC--cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence            2221  122 22456677776644 4567889999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC
Q psy13076        162 NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED  241 (423)
Q Consensus       162 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d  241 (423)
                      ++.......|   ...|.++..+|++.++++.-..                                             
T Consensus       582 egrqlqqhdF---~SQIfSLg~cP~~dWlavGMen---------------------------------------------  613 (705)
T KOG0639|consen  582 EGRQLQQHDF---SSQIFSLGYCPTGDWLAVGMEN---------------------------------------------  613 (705)
T ss_pred             hhhhhhhhhh---hhhheecccCCCccceeeeccc---------------------------------------------
Confidence            8776655444   3568888888888887764322                                             


Q ss_pred             CeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE
Q psy13076        242 NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL  321 (423)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  321 (423)
                      +.+.+.... ...++.+..|..-|.+|.|.+.|+.+++.+.|+.+..|...-|..+.+..   ....|.+..++.|.+++
T Consensus       614 s~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyI  689 (705)
T KOG0639|consen  614 SNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYI  689 (705)
T ss_pred             CcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---ccCcceeeeeccCceEE
Confidence            111111110 01123345577779999999999999999999999999987776665543   46779999999999999


Q ss_pred             EEEeCCCcEEEEec
Q psy13076        322 LTASGDKTCKLWDI  335 (423)
Q Consensus       322 ~s~s~d~~i~iwd~  335 (423)
                      +|||.|+...+|.+
T Consensus       690 VTGSGdkkATVYeV  703 (705)
T KOG0639|consen  690 VTGSGDKKATVYEV  703 (705)
T ss_pred             EecCCCcceEEEEE
Confidence            99999999988875

>KOG2445|consensus

Probab=99.89  E-value=6.9e-21  Score=158.89  Aligned_cols=259  Identities=22%  Similarity=0.361  Sum_probs=168.4

Q ss_pred             EEEEeCCEEEEEeccceEEEEeccCCCC---ceeecccccCceeEEEEeC--CCCeEEEecCCCceEEeecCCcceeecc
Q psy13076         11 SCLWQGDYLLTVSLSGFISYLDVNNPST---PIRVIKGHNKPITALALSP--DRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus        11 ~~~~~~~~~~~~~~dg~i~~~d~~~~~~---~~~~~~gh~~~V~~l~~~~--~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      .+++-|+.+|+||.|+.|.+||.+.+..   +....+.|.+.|..+.|.+  -|+.+|++|.|++++||.-+..    .+
T Consensus        20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~----~~   95 (361)
T KOG2445|consen   20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK----SE   95 (361)
T ss_pred             eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc----cc
Confidence            3334599999999999999999654333   2335689999999999965  4899999999999999976421    11


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCC
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~  163 (423)
                      ..             .|+       .-++.         .++..-.+.|+.++|.|.  |-.||+++.||++|||+..+.
T Consensus        96 ~~-------------~~~-------~Wv~~---------ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp  146 (361)
T KOG2445|consen   96 EA-------------HGR-------RWVRR---------TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP  146 (361)
T ss_pred             cc-------------ccc-------eeEEE---------EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence            00             000       01111         123334568999999994  789999999999999997653


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCC--CeeEEEEeCC
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSR--PFRIITGSED  241 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~s~s~d  241 (423)
                      -.+....+..   ++..+. .|-+                             .+..+..|+.|+|+.  +-.|+.|+.+
T Consensus       147 ~nLs~W~Lq~---Ei~~~~-~pp~-----------------------------~~~~~~~CvsWn~sr~~~p~iAvgs~e  193 (361)
T KOG2445|consen  147 MNLSQWTLQH---EIQNVI-DPPG-----------------------------KNKQPCFCVSWNPSRMHEPLIAVGSDE  193 (361)
T ss_pred             cccccchhhh---hhhhcc-CCcc-----------------------------cccCcceEEeeccccccCceEEEEccc
Confidence            3222111110   000000 0000                             111223344444332  1235555544


Q ss_pred             -----CeEEEEcCC----CceeeeeccccccCeEEEEECCC-C---CEEEEEEecCeEEEEECCCcc------------c
Q psy13076        242 -----NTIAVFEGP----PFKFKMTKQEHSRFVQAVRYSPS-G---SHFASAGFDGKVFLYDGASAD------------L  296 (423)
Q Consensus       242 -----~~i~~~~~~----~~~~~~~~~~~~~~i~~l~~s~~-g---~~l~s~s~dg~i~vwd~~~~~------------~  296 (423)
                           +.+++|+..    .+...-++..|..+|+.++|.|+ |   .+||+++.|| |+||.++...            .
T Consensus       194 ~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~  272 (361)
T KOG2445|consen  194 DAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDL  272 (361)
T ss_pred             CCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCC
Confidence                 356666532    22233356689999999999997 3   3689999999 9999876311            0


Q ss_pred             -----eecc-cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        297 -----VSEL-GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       297 -----~~~~-~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                           +..+ ....|++.|+.+.|+=.|..|++.|.||.||+|...
T Consensus       273 ~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  273 MTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence                 1111 124699999999999999999999999999999643

>KOG4378|consensus

Probab=99.88  E-value=1e-20  Score=167.32  Aligned_cols=294  Identities=16%  Similarity=0.223  Sum_probs=215.3

Q ss_pred             eEEEecCCeEEEEecCCCcccccccCCc--ceEEEEEECCCCC-EEEEEccCCcEEEEEcCCCce-eEEeeecCCCCCee
Q psy13076        104 NFLYTNGNSVIIRNIENPAISDIYTEHS--CAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKEH-ILKNEFHPIGGPIK  179 (423)
Q Consensus       104 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~--~~i~~~~~sp~~~-~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~v~  179 (423)
                      ..+.+.+..+++||...-.....+..|+  -.+.+++|+.... .+++.+.|..+++|.-..+.. +...... ..+.-.
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~-~gd~~~   83 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKL-TGDNAF   83 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecc-ccchHH
Confidence            3455678899999987655444444443  2488999988663 445566788999998433211 1111111 112223


Q ss_pred             EEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecc
Q psy13076        180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ  259 (423)
Q Consensus       180 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~  259 (423)
                      |++......+++.+  +......+|+.......+.++.|...|+++.|+-.+.+ ||+++..|.|.+.........-++.
T Consensus        84 Cv~~~s~S~y~~sg--G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdiiih~~~t~~~tt~f~  160 (673)
T KOG4378|consen   84 CVACASQSLYEISG--GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDIIIHGTKTKQKTTTFT  160 (673)
T ss_pred             HHhhhhcceeeecc--CcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce-eEEeccCCcEEEEecccCcccccee
Confidence            44444444555444  45556788888877777889999999999999988776 8999999999998754433222222


Q ss_pred             cc-ccCeEEEEECCCCCE-EEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecC
Q psy13076        260 EH-SRFVQAVRYSPSGSH-FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       260 ~~-~~~i~~l~~s~~g~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~  336 (423)
                      .. ...++-|.|+|..++ |.+++.+|.|.+||......+.... .+|.....+++|+|.+ .+|++.+.|+.|.+||+.
T Consensus       161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~-~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS-EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh-hhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            22 334668999998874 6778999999999998766665554 3699999999999955 678889999999999999


Q ss_pred             CcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC
Q psy13076        337 TKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR  404 (423)
Q Consensus       337 ~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~  404 (423)
                      +.+....+...++..  .+.+..+|-+|++|+..|.++.||++....|+++...|...|++++|-|..
T Consensus       240 s~~s~~~l~y~~Pls--tvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  240 SQASTDRLTYSHPLS--TVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccccceeeecCCcc--eeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            888777766555543  455667999999999999999999999999999999999999999998764

>KOG1009|consensus

Probab=99.88  E-value=1.7e-20  Score=162.11  Aligned_cols=307  Identities=20%  Similarity=0.297  Sum_probs=202.7

Q ss_pred             cCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccc
Q psy13076         47 NKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD  125 (423)
Q Consensus        47 ~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  125 (423)
                      ..||.++.|.++.. .|+||+.|..||+|-++...                   |.+.        ...+      +...
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~-------------------~~~~--------~~~V------~y~s   59 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSE-------------------PGGG--------DMKV------EYLS   59 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecC-------------------CCCC--------ceeE------EEee
Confidence            35899999988776 89999999999999876431                   0110        0000      1234


Q ss_pred             cccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEe
Q psy13076        126 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM  205 (423)
Q Consensus       126 ~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~  205 (423)
                      .+.+|...|+.++|+|+|..+|||+.+|.|.+|........     ..   .- ...-.+            +       
T Consensus        60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-----~~---d~-e~~~~k------------e-------  111 (434)
T KOG1009|consen   60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-----DA---DT-EADLNK------------E-------  111 (434)
T ss_pred             cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-----cc---cc-hhhhCc------------c-------
Confidence            67899999999999999999999999999999986531100     00   00 000000            0       


Q ss_pred             ecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCe
Q psy13076        206 SETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK  285 (423)
Q Consensus       206 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~  285 (423)
                        .-.....+.+|...|..++|+|++.+ +++++.|+.+.+||...........+|..++..++|.|-++|+++-+.|..
T Consensus       112 --~w~v~k~lr~h~~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~  188 (434)
T KOG1009|consen  112 --KWVVKKVLRGHRDDIYDLAWSPDSNF-LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH  188 (434)
T ss_pred             --ceEEEEEecccccchhhhhccCCCce-eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc
Confidence              00112234568888999999999887 889999999999999999998899999999999999999999999999987


Q ss_pred             EEEEECCCccceeccc------cc-----------ccC----CCeEEEEECCCCCeEEEEeC----CC-----cEEEEec
Q psy13076        286 VFLYDGASADLVSELG------NP-----------AHK----GGVYAVAWKPDGTQLLTASG----DK-----TCKLWDI  335 (423)
Q Consensus       286 i~vwd~~~~~~~~~~~------~~-----------~~~----~~i~~l~~~~~~~~l~s~s~----d~-----~i~iwd~  335 (423)
                      .+++.....+.+....      ..           -|.    .-...++|+|+|.+|++...    .+     +..+|+-
T Consensus       189 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr  268 (434)
T KOG1009|consen  189 PEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR  268 (434)
T ss_pred             cceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc
Confidence            7777654433322211      00           011    12457889999999987532    11     2233332


Q ss_pred             CCcceeeeeeeCceeEeeEEEEE------------------ecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeE
Q psy13076        336 ETKSAVSEFLMGNQVEDQQVSCL------------------WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITA  397 (423)
Q Consensus       336 ~~~~~i~~~~~~~~~~~~~~~~~------------------~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~  397 (423)
                      +..+...............+.++                  |-+. +.+......+++||.++.......-.-|-.+|++
T Consensus       269 k~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl-vfaiAt~~svyvydtq~~~P~~~v~nihy~~iTD  347 (434)
T KOG1009|consen  269 KDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL-VFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITD  347 (434)
T ss_pred             ccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccce-EEEEeecceEEEeccccccceEEEeeeeeeeecc
Confidence            21111000000000001111111                  1122 2344557789999998865544444568889999


Q ss_pred             EEecCCCCeEEEecCCCcEEE
Q psy13076        398 LALSPDRGTVFTGSHDGFITR  418 (423)
Q Consensus       398 i~~sp~~~~l~s~s~D~~i~~  418 (423)
                      ++|++||..|+..|.||++.+
T Consensus       348 iaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  348 IAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             eeecCCCcEEEEeccCCceEE
Confidence            999999999999999998765

>KOG2919|consensus

Probab=99.88  E-value=1.1e-20  Score=158.71  Aligned_cols=292  Identities=19%  Similarity=0.304  Sum_probs=190.7

Q ss_pred             EEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCc
Q psy13076         52 ALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS  131 (423)
Q Consensus        52 ~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~  131 (423)
                      .+.|+|||.-+++-+.|..+++|++-..-.-+.     ...+..+.   ....+-+-.+.++.-.-.         -.| 
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~-----~~~~~~~~---~~~~~r~~eg~tvydy~w---------Ys~-  115 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK-----ADGPLNFS---KHLSYRYQEGETVYDYCW---------YSR-  115 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccC-----CCCccccc---cceeEEeccCCEEEEEEe---------eec-
Confidence            478999999999999999999999753211000     00000000   000000111111111000         000 


Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCC---CeeEEEECCCCCeEEEEEcCCceeeEEEeecC
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG---PIKDIAWSPDNQRMVVVGEGRERFGHVFMSET  208 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~  208 (423)
                        +.+  -.|+..++|+.+.+.-|++||.-+++...+.....+-.   ...+++|+|||.++++                
T Consensus       116 --M~s--~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa----------------  175 (406)
T KOG2919|consen  116 --MKS--DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA----------------  175 (406)
T ss_pred             --ccc--CCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee----------------
Confidence              111  14778899999999999999988776443322111112   2346777777766553                


Q ss_pred             CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC-CCce-------eeeeccccccCeEEEEECCCCC-EEEE
Q psy13076        209 GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG-PPFK-------FKMTKQEHSRFVQAVRYSPSGS-HFAS  279 (423)
Q Consensus       209 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~-~~~~-------~~~~~~~~~~~i~~l~~s~~g~-~l~s  279 (423)
                                                    +..+.|++|+. ++..       ......+....|.+++|+|-.. .++.
T Consensus       176 ------------------------------GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~  225 (406)
T KOG2919|consen  176 ------------------------------GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAV  225 (406)
T ss_pred             ------------------------------cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceee
Confidence                                          23344555543 1111       0000123345688999999655 8999


Q ss_pred             EEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecCCcce-eeeeeeCc--eeEeeEE
Q psy13076        280 AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIETKSA-VSEFLMGN--QVEDQQV  355 (423)
Q Consensus       280 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~-i~~~~~~~--~~~~~~~  355 (423)
                      |++...+-++.-..++.+..+.  +|.++|+.+.|+++|+.|++|.. |-.|..||++.... +-++....  ...-..+
T Consensus       226 gsY~q~~giy~~~~~~pl~llg--gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~F  303 (406)
T KOG2919|consen  226 GSYGQRVGIYNDDGRRPLQLLG--GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILF  303 (406)
T ss_pred             ecccceeeeEecCCCCceeeec--ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEE
Confidence            9999998888766666666664  79999999999999999999865 77899999976432 22221111  2223345


Q ss_pred             EEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCC
Q psy13076        356 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD  413 (423)
Q Consensus       356 ~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D  413 (423)
                      ...+.|++|++|+.+|.|.+||..+...++..+..|...|+.++++|--.+++|++..
T Consensus       304 Dld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  304 DLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            5567999999999999999999999888888889999999999999999999988754

>KOG4328|consensus

Probab=99.87  E-value=2.9e-20  Score=162.94  Aligned_cols=280  Identities=15%  Similarity=0.291  Sum_probs=186.3

Q ss_pred             eeEEEE-eC-CEEEEEeccceEEEEeccC---CCCceeecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcce-
Q psy13076          9 QVSCLW-QG-DYLLTVSLSGFISYLDVNN---PSTPIRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYI-   81 (423)
Q Consensus         9 ~~~~~~-~~-~~~~~~~~dg~i~~~d~~~---~~~~~~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~-   81 (423)
                      +++++| .. +++|+|..-|.|.+||+.+   ...-++.+..|..+|.++.|+|. ..++++.|.||+||.=|+++.-. 
T Consensus       191 ~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e  270 (498)
T KOG4328|consen  191 SLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE  270 (498)
T ss_pred             EEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhH
Confidence            356666 45 8899999999999999942   22346788899999999999994 56899999999999999986421 


Q ss_pred             -eecccCCCCCCceEE---eeCCCCCeEEE-ecCCeEEEEecCCCcc-cccccCCcceEEEEEECC-CCCEEEEEccCCc
Q psy13076         82 -FATLPRTQRGQPIVL---GGDPKGKNFLY-TNGNSVIIRNIENPAI-SDIYTEHSCAVNVAKYSP-SGFYIASGDISGK  154 (423)
Q Consensus        82 -~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~i~~~~~~~~-~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~  154 (423)
                       +.++.    .....+   .++.+...+++ ..=....+||...+.- ...+.-|...|.+++++| ...+|||++.|++
T Consensus       271 ~v~s~~----~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T  346 (498)
T KOG4328|consen  271 EVLSLD----TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT  346 (498)
T ss_pred             HHhhcC----ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc
Confidence             11111    111111   12222222222 2222567777765443 445567888999999999 5678999999999


Q ss_pred             EEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCee
Q psy13076        155 VRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFR  234 (423)
Q Consensus       155 i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  234 (423)
                      .+|||++.-....        .        |    ++                      ....|...|++..|+|++.. 
T Consensus       347 ~kIWD~R~l~~K~--------s--------p----~l----------------------st~~HrrsV~sAyFSPs~gt-  383 (498)
T KOG4328|consen  347 AKIWDLRQLRGKA--------S--------P----FL----------------------STLPHRRSVNSAYFSPSGGT-  383 (498)
T ss_pred             eeeeehhhhcCCC--------C--------c----ce----------------------ecccccceeeeeEEcCCCCc-
Confidence            9999986432110        0        1    11                      01235567777778887765 


Q ss_pred             EEEEeCCCeEEEEcCCCc----ee---eeeccccccCe--EEEEECCCCCEEEEEEecCeEEEEECCCccceeccccccc
Q psy13076        235 IITGSEDNTIAVFEGPPF----KF---KMTKQEHSRFV--QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH  305 (423)
Q Consensus       235 ~~s~s~d~~i~~~~~~~~----~~---~~~~~~~~~~i--~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  305 (423)
                      +++-+.|+.|++||....    ..   ......+..++  ....|.|+..++++|-.-..|-++|.+.++.+.++..+..
T Consensus       384 l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~  463 (498)
T KOG4328|consen  384 LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES  463 (498)
T ss_pred             eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc
Confidence            788888999999986311    11   11111122222  3467999999999999999999999888886766644322


Q ss_pred             CCCeEE-EEECCCCCeEEEE-eCCCcEEEEecC
Q psy13076        306 KGGVYA-VAWKPDGTQLLTA-SGDKTCKLWDIE  336 (423)
Q Consensus       306 ~~~i~~-l~~~~~~~~l~s~-s~d~~i~iwd~~  336 (423)
                       ..|.+ ..|+|-+..+++| +..|.|.||--+
T Consensus       464 -~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  464 -STIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             -cccccceeecccccceeccCCccceEEEEecC
Confidence             23443 5799988845554 557788877543

>KOG1538|consensus

Probab=99.86  E-value=7.1e-20  Score=167.43  Aligned_cols=269  Identities=16%  Similarity=0.302  Sum_probs=196.0

Q ss_pred             EeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCC
Q psy13076         96 LGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG  175 (423)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  175 (423)
                      +.+.|+|..++...++.+.++|..++.+...+.+|++.|.+++|+.||+.+|||+.|..+.+|+.+- +..++   ..++
T Consensus        18 ~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~Lk---YSH~   93 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILK---YSHN   93 (1081)
T ss_pred             eEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceee---eccC
Confidence            5788999999999999999999999999999999999999999999999999999999999999642 22221   2456


Q ss_pred             CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK  255 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~  255 (423)
                      +.|.++.|+|-...+++++-+..                                              .+|.... +..
T Consensus        94 D~IQCMsFNP~~h~LasCsLsdF----------------------------------------------glWS~~q-K~V  126 (1081)
T KOG1538|consen   94 DAIQCMSFNPITHQLASCSLSDF----------------------------------------------GLWSPEQ-KSV  126 (1081)
T ss_pred             CeeeEeecCchHHHhhhcchhhc----------------------------------------------cccChhh-hhH
Confidence            78889999988777666542221                                              1121100 000


Q ss_pred             eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc-cccCCCeEEEEECCCC-----CeEEEEeCCCc
Q psy13076        256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN-PAHKGGVYAVAWKPDG-----TQLLTASGDKT  329 (423)
Q Consensus       256 ~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~i~~l~~~~~~-----~~l~s~s~d~~  329 (423)
                       ........+.+++|..||++++.|-.+|+|.+.+ ++++.-..+.. .+.+..|++++|+|+.     ..++......|
T Consensus       127 -~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT  204 (1081)
T KOG1538|consen  127 -SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT  204 (1081)
T ss_pred             -HhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence             0011223477899999999999999999999986 44443333333 2457889999999953     46777777788


Q ss_pred             EEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEE
Q psy13076        330 CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFT  409 (423)
Q Consensus       330 i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s  409 (423)
                      +.++.+.. +.+.+-. .-......++..++|++++.|+.++.+.++--..  ..+.++.....+||+++..|+++.++.
T Consensus       205 LSFy~LsG-~~Igk~r-~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G--vrLGTvg~~D~WIWtV~~~PNsQ~v~~  280 (1081)
T KOG1538|consen  205 LSFYQLSG-KQIGKDR-ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG--VRLGTVGEQDSWIWTVQAKPNSQYVVV  280 (1081)
T ss_pred             eEEEEecc-eeecccc-cCCCCchhheeccCCcEEEEccCCCceEEEeecC--eEEeeccccceeEEEEEEccCCceEEE
Confidence            88877643 3332110 0112233455667999999999999999884322  223344456679999999999999999


Q ss_pred             ecCCCcEEEeeC
Q psy13076        410 GSHDGFITRWNA  421 (423)
Q Consensus       410 ~s~D~~i~~W~~  421 (423)
                      |..||+|..|++
T Consensus       281 GCqDGTiACyNl  292 (1081)
T KOG1538|consen  281 GCQDGTIACYNL  292 (1081)
T ss_pred             EEccCeeehhhh
Confidence            999999998875

>KOG0642|consensus

Probab=99.86  E-value=9.3e-21  Score=170.16  Aligned_cols=257  Identities=20%  Similarity=0.319  Sum_probs=171.5

Q ss_pred             CCEEEEEeccceEEEEecc-------CCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076         16 GDYLLTVSLSGFISYLDVN-------NPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~-------~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      ---+++|+.||.|.+|.+.       ..-+|+++|++|.+||.|+.++++++.++||+-||+|+.|++-..         
T Consensus       306 ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n---------  376 (577)
T KOG0642|consen  306 EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPN---------  376 (577)
T ss_pred             CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCC---------
Confidence            4567889999999999981       234578899999999999999999999999999999999987410         


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                               .+|+..              -+...+...+.||+..|+.+++|+....|++++.||++|+|+..+......
T Consensus       377 ---------~dp~ds--------------~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f  433 (577)
T KOG0642|consen  377 ---------QDPDDS--------------YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTF  433 (577)
T ss_pred             ---------CCcccc--------------cCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcccc
Confidence                     011100              011234457889999999999999999999999999999999765544111


Q ss_pred             eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076        169 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE  248 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~  248 (423)
                      .. ....+--.+++|-.......+++ ....                          .+.+..   +-++   ..+.+++
T Consensus       434 ~~-~~e~g~Plsvd~~ss~~a~~~~s-~~~~--------------------------~~~~~~---~ev~---s~~~~~~  479 (577)
T KOG0642|consen  434 GE-PKEHGYPLSVDRTSSRPAHSLAS-FRFG--------------------------YTSIDD---MEVV---SDLLIFE  479 (577)
T ss_pred             CC-ccccCCcceEeeccchhHhhhhh-cccc--------------------------cccchh---hhhh---hheeecc
Confidence            00 00111112333222110000000 0000                          000000   0000   0011111


Q ss_pred             CCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCC
Q psy13076        249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       249 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                      ...    .........+..+.++|.+...+++..|+.|+++|..+++.+...  .+|...++++++.|+|.+|++++.|+
T Consensus       480 s~~----~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~--~a~~~svtslai~~ng~~l~s~s~d~  553 (577)
T KOG0642|consen  480 SSA----SPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM--VAHKDSVTSLAIDPNGPYLMSGSHDG  553 (577)
T ss_pred             ccC----CCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe--eeccceecceeecCCCceEEeecCCc
Confidence            000    000111233566788999999999999999999999999987765  36889999999999999999999999


Q ss_pred             cEEEEecCCcceeeee
Q psy13076        329 TCKLWDIETKSAVSEF  344 (423)
Q Consensus       329 ~i~iwd~~~~~~i~~~  344 (423)
                      .+++|.+..+.++...
T Consensus       554 sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  554 SVRLWKLDVKTCVLES  569 (577)
T ss_pred             eeehhhccchheeecc
Confidence            9999999887766543

>KOG2055|consensus

Probab=99.86  E-value=4.8e-20  Score=161.71  Aligned_cols=243  Identities=19%  Similarity=0.313  Sum_probs=197.9

Q ss_pred             CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc
Q psy13076        173 PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF  252 (423)
Q Consensus       173 ~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~  252 (423)
                      +..+.|++|.|+|....+++++.++.....-.+......++.+.....||.++.|.|++...+++++....++.||...-
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            34578999999999999999887665443334444455667777778899999999999978999999999999997654


Q ss_pred             eeee--ecccc-ccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCc
Q psy13076        253 KFKM--TKQEH-SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT  329 (423)
Q Consensus       253 ~~~~--~~~~~-~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~  329 (423)
                      +...  ...++ ...+....++|++++|+..+..|.|.+-..++++.+..+.   ..+.+.++.|+.+++.|++++.+|.
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K---ieG~v~~~~fsSdsk~l~~~~~~Ge  367 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK---IEGVVSDFTFSSDSKELLASGGTGE  367 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee---eccEEeeEEEecCCcEEEEEcCCce
Confidence            4322  12222 3456678899999999999999999999999999888775   3678999999999999999999999


Q ss_pred             EEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCC-----CCCceEEeccCCCceeEEEecCCC
Q psy13076        330 CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN-----PSTPIRVIKGHNKPITALALSPDR  404 (423)
Q Consensus       330 i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~-----~~~~~~~~~~h~~~v~~i~~sp~~  404 (423)
                      |.+||+++..++..|..........++.+.+|.++++|+..|.+.+||.++     .+.|++.+..-...|+++.|+||.
T Consensus       368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~  447 (514)
T KOG2055|consen  368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA  447 (514)
T ss_pred             EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence            999999999999999776666677777788999999999999999999653     456777777788899999999999


Q ss_pred             CeEEEec--CCCcEEE
Q psy13076        405 GTVFTGS--HDGFITR  418 (423)
Q Consensus       405 ~~l~s~s--~D~~i~~  418 (423)
                      ++|+-+|  .+..+|+
T Consensus       448 qiLAiaS~~~knalrL  463 (514)
T KOG2055|consen  448 QILAIASRVKKNALRL  463 (514)
T ss_pred             hhhhhhhhccccceEE
Confidence            9987665  4555555

>KOG4227|consensus

Probab=99.85  E-value=2.9e-19  Score=153.83  Aligned_cols=317  Identities=17%  Similarity=0.253  Sum_probs=214.4

Q ss_pred             ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076         42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP  121 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (423)
                      -+.+|.+-|+++.|+.++++|+||+.|..+++|+++.-...+                                    .+
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k------------------------------------~~   94 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK------------------------------------TP   94 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc------------------------------------CC
Confidence            467999999999999999999999999999999987421111                                    11


Q ss_pred             ccccccc-CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        122 AISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       122 ~~~~~~~-~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                      +.+.+.. .|.+.|.+++|...+.++.+|..+++|.+.|+++++.+....-..-.+.|..+..+|....+++++...  .
T Consensus        95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~--~  172 (609)
T KOG4227|consen   95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAK--L  172 (609)
T ss_pred             CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCc--e
Confidence            2222222 366899999999999999999999999999999887664433222335788899999888777776443  3


Q ss_pred             eEEEeecCCc-c--eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee-------eeccccccCeEEEEE
Q psy13076        201 GHVFMSETGT-S--VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK-------MTKQEHSRFVQAVRY  270 (423)
Q Consensus       201 ~~~~~~~~~~-~--~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~-------~~~~~~~~~i~~l~~  270 (423)
                      ..+|+..... .  +.-+....+...++.|+|..+.++++.+.-+.+.+||.+.....       +.+...........|
T Consensus       173 V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~  252 (609)
T KOG4227|consen  173 VSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLW  252 (609)
T ss_pred             EEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheee
Confidence            3444433222 1  11223344567788999999998999999999999996533211       111111222356789


Q ss_pred             CCCCCEEEEEEecCeEEEEECCCccceecccccccC-------CCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeee
Q psy13076        271 SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHK-------GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE  343 (423)
Q Consensus       271 s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~  343 (423)
                      +|.|..|.+.-....-.+||.-+.++. .++.. |+       ..+.+++|-.+-. +++|+.+--|.+|.+....--.-
T Consensus       253 ~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G  329 (609)
T KOG4227|consen  253 SPSGNQFMSIRRGKCPLYFDFISQRCF-VLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYG  329 (609)
T ss_pred             CCCCCeehhhhccCCCEEeeeecccce-eEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccC
Confidence            999999888766666677887664432 12211 22       2356788876544 89999999999998864321111


Q ss_pred             ee-eCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        344 FL-MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       344 ~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      |. .++......      .+          |.+      +..+.+++||..-++.+.|+|...+|++.|-.+.+++|..
T Consensus       330 ~~~IG~~~~~~~------~~----------~~i------~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  330 FTQIGHDEEEMP------SE----------IFI------EKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             ccccCcchhhCc------hh----------hee------cceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            10 000000000      00          000      2335678999999999999999999999999999999963

>KOG1445|consensus

Probab=99.85  E-value=1.7e-18  Score=157.62  Aligned_cols=192  Identities=20%  Similarity=0.364  Sum_probs=137.3

Q ss_pred             eeEEEEecCCCeeEEEEeCCCeEEEEcCCC-------ceeeeeccccccCeEEEEECCCC-CEEEEEEecCeEEEEECCC
Q psy13076        222 INSCDFKPSRPFRIITGSEDNTIAVFEGPP-------FKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGAS  293 (423)
Q Consensus       222 i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-------~~~~~~~~~~~~~i~~l~~s~~g-~~l~s~s~dg~i~vwd~~~  293 (423)
                      |+.+.|.|-+..+++.+..|+.|++|....       ......+..|.+.|+++.|+|-. ..|+++++|-+|++||+.+
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            566777787777899999999999996432       22334566788899999999964 5789999999999999999


Q ss_pred             ccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce-eeeeeeCceeEeeEEEEEecCcEEEEEeCC--
Q psy13076        294 ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA-VSEFLMGNQVEDQQVSCLWQGDYLLTVSLS--  370 (423)
Q Consensus       294 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~-i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--  370 (423)
                      ++....+  .+|.+.|.+++|+|+|+.+++.+.||+|++|+.++++. +.+-.....-+...+...-+|.++++.+.|  
T Consensus       710 ~~~~~~l--~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~  787 (1012)
T KOG1445|consen  710 AKLYSRL--VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS  787 (1012)
T ss_pred             hhhhhee--ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence            9887777  47999999999999999999999999999999987654 222111111112222222289988876554  


Q ss_pred             --CcEEEEecCCCC-CceEEeccCCCceeEEEe-------cCCCC-eEEEecCCCcEEEeeC
Q psy13076        371 --GFISYLDVNNPS-TPIRVIKGHNKPITALAL-------SPDRG-TVFTGSHDGFITRWNA  421 (423)
Q Consensus       371 --~~i~~~~~~~~~-~~~~~~~~h~~~v~~i~~-------sp~~~-~l~s~s~D~~i~~W~~  421 (423)
                        +++.+||.++.. .+++.      .+.+++=       -+|.+ .++||=.|.+|..|.+
T Consensus       788 SeRQv~~Y~Aq~l~~~pl~t------~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv  843 (1012)
T KOG1445|consen  788 SERQVQMYDAQTLDLRPLYT------QVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV  843 (1012)
T ss_pred             chhhhhhhhhhhccCCccee------eeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence              468888877643 23322      1222222       23555 4578888999998865

>KOG0302|consensus

Probab=99.85  E-value=1.1e-19  Score=155.57  Aligned_cols=278  Identities=17%  Similarity=0.282  Sum_probs=184.4

Q ss_pred             ccccCceeEEEEeCCC--CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076         44 KGHNKPITALALSPDR--GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP  121 (423)
Q Consensus        44 ~gh~~~V~~l~~~~~~--~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (423)
                      -+|.+.++-+...+-+  .+.++=+..|.|+|||+...  +..+..                       ....+.+ ...
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~-----------------------~~~~~~~-s~~  201 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSE-----------------------PGLEVKD-SEF  201 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcC-----------------------ccccccc-ccc
Confidence            3688888888887754  56777789999999998542  111100                       0000001 123


Q ss_pred             cccccccCCcceEEEEEECCCC-CEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        122 AISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       122 ~~~~~~~~h~~~i~~~~~sp~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                      +.+..+.+|...=..++|||-. -.++||+--+.|++|...++.-....                               
T Consensus       202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~-------------------------------  250 (440)
T KOG0302|consen  202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ-------------------------------  250 (440)
T ss_pred             CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC-------------------------------
Confidence            3445677899888999999932 24788887889999997664321100                               


Q ss_pred             eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc--eeeeeccccccCeEEEEECCCCCEEE
Q psy13076        201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF--KFKMTKQEHSRFVQAVRYSPSGSHFA  278 (423)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~--~~~~~~~~~~~~i~~l~~s~~g~~l~  278 (423)
                                  ..+.+|.+.|..+.|+|.....|++||.|++|++||.+..  +.......|...|+.+.|+.+..+||
T Consensus       251 ------------~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLa  318 (440)
T KOG0302|consen  251 ------------RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLA  318 (440)
T ss_pred             ------------ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceee
Confidence                        0112355566666677766667999999999999997643  23334478999999999999999999


Q ss_pred             EEEecCeEEEEECCCcc---ceecccccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeE
Q psy13076        279 SAGFDGKVFLYDGASAD---LVSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQ  354 (423)
Q Consensus       279 s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~  354 (423)
                      +|+.||+++|||+++.+   .+..+  +-|+..|+++.|+|.. ..|++++.|.+|.|||+..-.-..+.....      
T Consensus       319 sG~DdGt~~iwDLR~~~~~~pVA~f--k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a------  390 (440)
T KOG0302|consen  319 SGGDDGTLSIWDLRQFKSGQPVATF--KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEA------  390 (440)
T ss_pred             ecCCCceEEEEEhhhccCCCcceeE--EeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcccc------
Confidence            99999999999998644   34444  3599999999999954 577888899999999986432211100000      


Q ss_pred             EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCC-eEEEecCCCcEEE
Q psy13076        355 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITR  418 (423)
Q Consensus       355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~-~l~s~s~D~~i~~  418 (423)
                                    ..+   +-++  +.+.+.+..| ++.|-.+.|++.-+ +|+|.+.||.-.+
T Consensus       391 --------------~~~---L~dl--PpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dGfnVf  435 (440)
T KOG0302|consen  391 --------------AEG---LQDL--PPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDGFNVF  435 (440)
T ss_pred             --------------ccc---hhcC--CceeEEEecc-hhHhhhheeccCCCCeEEEecccceeEE
Confidence                          000   1111  1122222112 45688899999754 7889999986443

>KOG0307|consensus

Probab=99.85  E-value=9.4e-21  Score=183.26  Aligned_cols=237  Identities=20%  Similarity=0.345  Sum_probs=177.3

Q ss_pred             CEEEEEeccceEEEEeccC---CCC--ceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCC
Q psy13076         17 DYLLTVSLSGFISYLDVNN---PST--PIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQR   90 (423)
Q Consensus        17 ~~~~~~~~dg~i~~~d~~~---~~~--~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~   90 (423)
                      +.||.|..||.|-+||...   +.+  .+.++.-|+++|..|.|++... +||||+.||.|.|||+++-+.-..      
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~------  154 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT------  154 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC------
Confidence            4699999999999999753   111  2345678999999999999765 999999999999999975211000      


Q ss_pred             CCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEe
Q psy13076         91 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKN  169 (423)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~  169 (423)
                               +.                         -..-...|.++.|+. ...+||+++.+|.+.|||++.++.+...
T Consensus       155 ---------~~-------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l  200 (1049)
T KOG0307|consen  155 ---------PG-------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL  200 (1049)
T ss_pred             ---------CC-------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc
Confidence                     00                         011235688888886 4567899999999999999988766544


Q ss_pred             eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC---eEEE
Q psy13076        170 EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN---TIAV  246 (423)
Q Consensus       170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~---~i~~  246 (423)
                      ........+..++|+|+...                                            .+++++.|.   .|.+
T Consensus       201 s~~~~~~~~S~l~WhP~~aT--------------------------------------------ql~~As~dd~~Pviql  236 (1049)
T KOG0307|consen  201 SDTPGRMHCSVLAWHPDHAT--------------------------------------------QLLVASGDDSAPVIQL  236 (1049)
T ss_pred             ccCCCccceeeeeeCCCCce--------------------------------------------eeeeecCCCCCceeEe
Confidence            43332234556677776543                                            344444333   5788


Q ss_pred             EcCCCc-eeeeeccccccCeEEEEECCCC-CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC-eEEE
Q psy13076        247 FEGPPF-KFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLT  323 (423)
Q Consensus       247 ~~~~~~-~~~~~~~~~~~~i~~l~~s~~g-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s  323 (423)
                      ||.+-- .....+..|...|.++.|++.+ .++++++.|+.|.+|+.++++.+.++..  ...++..+.|+|... .++.
T Consensus       237 WDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~  314 (1049)
T KOG0307|consen  237 WDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAA  314 (1049)
T ss_pred             ecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhh
Confidence            885422 2344567899999999999987 7999999999999999999999988853  568899999999776 7888


Q ss_pred             EeCCCcEEEEecCCcc
Q psy13076        324 ASGDKTCKLWDIETKS  339 (423)
Q Consensus       324 ~s~d~~i~iwd~~~~~  339 (423)
                      ++-||+|-|+.+.+..
T Consensus       315 asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  315 ASFDGKISIYSLQGTD  330 (1049)
T ss_pred             heeccceeeeeeecCC
Confidence            8999999999987654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=3.5e-16  Score=148.23  Aligned_cols=378  Identities=23%  Similarity=0.358  Sum_probs=257.7

Q ss_pred             EEEEeCCEEEEEeccceEEEEeccCCCCceeeccccc-CceeEEEE-eCCCC-eEEEecC-CCceEEeecCC-cceeecc
Q psy13076         11 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN-KPITALAL-SPDRG-TVFTGSH-DGFITRWNAKT-EYIFATL   85 (423)
Q Consensus        11 ~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~-~~V~~l~~-~~~~~-~l~sg~~-D~~i~vW~~~~-~~~~~~~   85 (423)
                      .+...+..++.++.|+.+.+|+...+......+.++. ..+..+.+ ++++. .++..+. |+.+++|+... ......+
T Consensus        72 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  151 (466)
T COG2319          72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL  151 (466)
T ss_pred             EECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence            3344799999999999999999876543566677744 47888888 78777 5555455 99999999987 4333333


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCCCcccccccCCcceEEEEEECCCCC-EEEEEccCCcEEEEEcCC
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVN  162 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~~~d~~i~vwd~~~  162 (423)
                      .. +......+.+.|+++.++...  +..+.+|+...+.....+.+|...|.+++|+|++. ++++++.|+.|++||...
T Consensus       152 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~  230 (466)
T COG2319         152 EG-HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST  230 (466)
T ss_pred             ec-CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence            22 222333678888888666554  67899999998888888899999999999999998 666669999999998775


Q ss_pred             CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc-eecccCCCcceeEEEEecCCCeeEEEEeCC
Q psy13076        163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS-VGEISGQSKPINSCDFKPSRPFRIITGSED  241 (423)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d  241 (423)
                      +..... .+..+.... ...|+|++..++.++  .+....+|....... ...+..|...+.++.+.|.... +++++.|
T Consensus       231 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d  305 (466)
T COG2319         231 GKLLRS-TLSGHSDSV-VSSFSPDGSLLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL-LASGSSD  305 (466)
T ss_pred             CcEEee-ecCCCCcce-eEeECCCCCEEEEec--CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCE-EEEeeCC
Confidence            444331 233333333 238999996666333  333455666554443 3333567788999999996665 4558888


Q ss_pred             CeEEEEcCCCceeeeecc--ccccCeEEEEECCCCCEEEEE-EecCeEEEEECCCccceecccccccCCCeEEEEECCCC
Q psy13076        242 NTIAVFEGPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASA-GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG  318 (423)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~  318 (423)
                      +.+.+|+...........  .|...+..+.+.+++..++.+ ..|+.+.+|+...........   ....+..+.+.+ .
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~  381 (466)
T COG2319         306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE---GHSNVLSVSFSP-D  381 (466)
T ss_pred             CcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEec---CCceEEEEEECC-C
Confidence            889999876554433333  666678888884343556555 688899999988776222221   112278899988 5


Q ss_pred             CeEEE-EeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeE
Q psy13076        319 TQLLT-ASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITA  397 (423)
Q Consensus       319 ~~l~s-~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~  397 (423)
                      ..... +..++.+.+|+.............. .........+++..++.+..++.+..|+...  ... .          
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~----------  447 (466)
T COG2319         382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT--SLK-S----------  447 (466)
T ss_pred             CCEEEEecCCCceEEEecccCeeeeeccCCC-CcEEEEEECCCCcEEEEecCCCcEEEEeccC--cEE-E----------
Confidence            44444 6889999999999887655543321 2223334445778888888999999999877  111 1          


Q ss_pred             EEecCCCCeEEEecC
Q psy13076        398 LALSPDRGTVFTGSH  412 (423)
Q Consensus       398 i~~sp~~~~l~s~s~  412 (423)
                      ..+.++.........
T Consensus       448 ~~~~~~~~~~~~~~~  462 (466)
T COG2319         448 VSFSPDGKVLASKSS  462 (466)
T ss_pred             EEECCCCcEEEeccc
Confidence            666776666655443

>KOG1009|consensus

Probab=99.85  E-value=3.8e-19  Score=153.83  Aligned_cols=296  Identities=21%  Similarity=0.284  Sum_probs=187.9

Q ss_pred             eeeEEEEeCC-EEEEEeccceEEEEeccC--CCC------ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCC
Q psy13076          8 QQVSCLWQGD-YLLTVSLSGFISYLDVNN--PST------PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT   78 (423)
Q Consensus         8 ~~~~~~~~~~-~~~~~~~dg~i~~~d~~~--~~~------~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~   78 (423)
                      |++.|...+. .+|+|+.|..|++|-++.  +.+      -...|..|...|+++.|+|+|.+|+||+.+|.|.+|-...
T Consensus        17 ~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~   96 (434)
T KOG1009|consen   17 YSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGD   96 (434)
T ss_pred             EEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecC
Confidence            5666776444 999999999999998742  122      1224678999999999999999999999999999997652


Q ss_pred             cc---------------eeecccCCCCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCC
Q psy13076         79 EY---------------IFATLPRTQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS  142 (423)
Q Consensus        79 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~  142 (423)
                      ..               +.....+.+.....-+.+.|+++.++.. .++.+.+||+..+.+...+.+|..-+..++|.|-
T Consensus        97 ~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl  176 (434)
T KOG1009|consen   97 VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPL  176 (434)
T ss_pred             cCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchh
Confidence            11               1111112223344446788999888775 4789999999999999999999999999999999


Q ss_pred             CCEEEEEccCCcEEEEEcCCCceeEEee-------------------ecC--CCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        143 GFYIASGDISGKVRIWDTVNKEHILKNE-------------------FHP--IGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       143 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------------------~~~--~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                      ++|+++-+.|...+..............                   ++.  .......++|+|+|..+++-+.--    
T Consensus       177 ~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~----  252 (434)
T KOG1009|consen  177 NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF----  252 (434)
T ss_pred             hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee----
Confidence            9999999999977777654332211110                   000  011233455666666555422100    


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce-eeeeccccccCeEEEEECC--------
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-FKMTKQEHSRFVQAVRYSP--------  272 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~-~~~~~~~~~~~i~~l~~s~--------  272 (423)
                         ......                             .-++.++|+....+ ....+.....+...++++|        
T Consensus       253 ---~~g~~~-----------------------------~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~  300 (434)
T KOG1009|consen  253 ---KVGGGV-----------------------------FRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPL  300 (434)
T ss_pred             ---eeCCce-----------------------------eeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccc
Confidence               000000                             00111222111000 0000011111111111111        


Q ss_pred             ---------CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076        273 ---------SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA  340 (423)
Q Consensus       273 ---------~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~  340 (423)
                               --+++++....+.|++||..+...+....+ .|-..+++++|+++|..|+..|.||...+-.+...++
T Consensus       301 ~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  301 SSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             cccccccccccceEEEEeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence                     123333334456899999998777766553 5888999999999999999999999888777766543

>KOG4378|consensus

Probab=99.84  E-value=8.9e-19  Score=155.11  Aligned_cols=292  Identities=16%  Similarity=0.161  Sum_probs=207.0

Q ss_pred             EEEEeccceEEEEeccCCCCceeeccccc--CceeEEEEeCCCCe-EEEecCCCceEEeecCCc--ceeecccCCCCCCc
Q psy13076         19 LLTVSLSGFISYLDVNNPSTPIRVIKGHN--KPITALALSPDRGT-VFTGSHDGFITRWNAKTE--YIFATLPRTQRGQP   93 (423)
Q Consensus        19 ~~~~~~dg~i~~~d~~~~~~~~~~~~gh~--~~V~~l~~~~~~~~-l~sg~~D~~i~vW~~~~~--~~~~~~~~~~~~~~   93 (423)
                      |..+|.-..+.+||...-.. ...+..|+  -.++++.|+....+ +++-+.|..+++|.-...  .+-...........
T Consensus         5 l~~aS~gd~~kl~D~s~~~~-~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~   83 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLET-KSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAF   83 (673)
T ss_pred             eeeeccCCceEEeecccccC-ccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHH
Confidence            44566667899999764222 11222232  23889999886543 456778999999975432  11111011111222


Q ss_pred             eEEeeCCCCCeEEEe--cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee
Q psy13076         94 IVLGGDPKGKNFLYT--NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF  171 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  171 (423)
                      |+...+..  .++++  .++.++|||+..+.+.+.+.+|++.|+++.|+....|+|+++..|-|.|..+.++....... 
T Consensus        84 Cv~~~s~S--~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~-  160 (673)
T KOG4378|consen   84 CVACASQS--LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT-  160 (673)
T ss_pred             HHhhhhcc--eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee-
Confidence            22221222  23333  35789999999888889999999999999999999999999999999999987764322111 


Q ss_pred             cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee-cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076        172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG-EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP  250 (423)
Q Consensus       172 ~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~  250 (423)
                      +..+..|+-+.|+|..++++....+++ ..++|+........ ....|..|...++|+|.++.++++-+.|..|.+||..
T Consensus       161 ~~sgqsvRll~ys~skr~lL~~asd~G-~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  161 IDSGQSVRLLRYSPSKRFLLSIASDKG-AVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             cCCCCeEEEeecccccceeeEeeccCC-eEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            223466789999999998888765544 46788877655443 4567889999999999999999999999999999976


Q ss_pred             CceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc-eecccccccCCCeEEEEECCCC
Q psy13076        251 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL-VSELGNPAHKGGVYAVAWKPDG  318 (423)
Q Consensus       251 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~i~~l~~~~~~  318 (423)
                      ..+....+ ....+.+.++|.++|-+|++|+..|.|..||++..+. +..+  .+|...|++++|-|..
T Consensus       240 s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  240 SQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR--SAHDASVTRVAFQPSP  305 (673)
T ss_pred             ccccccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe--eecccceeEEEeeecc
Confidence            44332222 2244678999999999999999999999999987654 3333  4688899999997754

>KOG0321|consensus

Probab=99.84  E-value=1.9e-19  Score=163.90  Aligned_cols=266  Identities=18%  Similarity=0.267  Sum_probs=168.9

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceee--cccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcce--eecccCCCC
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRV--IKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYI--FATLPRTQR   90 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~--~~~~~~~~~   90 (423)
                      ...|++++.|.+|++||+.. .+++..  +.||.+.|.+++|.|..+ .+++|+.||.|.|||..-..+  +..+.....
T Consensus       112 e~~lVsasGDsT~r~Wdvk~-s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~  190 (720)
T KOG0321|consen  112 ESLLVSASGDSTIRPWDVKT-SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIY  190 (720)
T ss_pred             ceeEEEccCCceeeeeeecc-ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhh
Confidence            45789999999999999975 555555  899999999999999765 688999999999999753211  110000000


Q ss_pred             CCceEEeeCCCCCeEEEecCCeEEEEecCCC--cccccccCCcceEEE---EEECCCCCEEEEEcc-CCcEEEEEcCCCc
Q psy13076         91 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENP--AISDIYTEHSCAVNV---AKYSPSGFYIASGDI-SGKVRIWDTVNKE  164 (423)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~h~~~i~~---~~~sp~~~~l~s~~~-d~~i~vwd~~~~~  164 (423)
                      +   .....|                ....+  +-...-..|...|.+   +-+..|...||+++. |+.|||||+.+..
T Consensus       191 ~---~~n~~p----------------tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  191 G---RHNTAP----------------TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             c---cccCCC----------------CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence            0   000000                00000  000111223344444   445678889999888 9999999998765


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI  244 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i  244 (423)
                      .....+      +.....+.-..                             .....+.++.....+++++|+|. |+.|
T Consensus       252 ~~~r~e------p~~~~~~~t~s-----------------------------krs~G~~nL~lDssGt~L~AsCt-D~sI  295 (720)
T KOG0321|consen  252 TAYRQE------PRGSDKYPTHS-----------------------------KRSVGQVNLILDSSGTYLFASCT-DNSI  295 (720)
T ss_pred             cccccC------CCcccCccCcc-----------------------------cceeeeEEEEecCCCCeEEEEec-CCcE
Confidence            432211      11111111000                             01113445556667788777776 9999


Q ss_pred             EEEcCCCceeee--ecccc--ccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC-C
Q psy13076        245 AVFEGPPFKFKM--TKQEH--SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG-T  319 (423)
Q Consensus       245 ~~~~~~~~~~~~--~~~~~--~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~  319 (423)
                      +.|+........  .+.++  ......-..+|++.++++|+.|...++|.+.+.+.-..+. .+|.-.|++++|.|.. .
T Consensus       296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-~Ght~eVt~V~w~pS~~t  374 (720)
T KOG0321|consen  296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-LGHTREVTTVRWLPSATT  374 (720)
T ss_pred             EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-hCcceEEEEEeeccccCC
Confidence            999976543221  11111  1122233468999999999999999999998877544332 4789999999998843 4


Q ss_pred             eEEEEeCCCcEEEEecCCc
Q psy13076        320 QLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       320 ~l~s~s~d~~i~iwd~~~~  338 (423)
                      -++++++|-++++|++..+
T Consensus       375 ~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  375 PVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CceeeccCcceEEEeccCc
Confidence            5778899999999998654

>KOG1034|consensus

Probab=99.83  E-value=3.3e-18  Score=144.26  Aligned_cols=292  Identities=18%  Similarity=0.263  Sum_probs=204.7

Q ss_pred             cccCCcceEEEEEECC-----CCCEEEEEccCCcEEEEEcCCCc--eeEEeeec-CCCCCeeEEEECCC---CCeEEEEE
Q psy13076        126 IYTEHSCAVNVAKYSP-----SGFYIASGDISGKVRIWDTVNKE--HILKNEFH-PIGGPIKDIAWSPD---NQRMVVVG  194 (423)
Q Consensus       126 ~~~~h~~~i~~~~~sp-----~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~-~~~~~v~~v~~s~~---~~~~~~~~  194 (423)
                      ....|+.+|..++|.+     ..+.+|+.+. ..+.+|+.....  ........ .+......++|+-+   +..+++++
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            4457888899999885     2456777664 467788765432  11111111 13344556777654   34455554


Q ss_pred             cCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee---ccccccCeEEEEEC
Q psy13076        195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT---KQEHSRFVQAVRYS  271 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~---~~~~~~~i~~l~~s  271 (423)
                      . .....++.+...++....+.+|...|+.+.+.|..+.+++++|.|..|++|+.....+...   ..+|.+.|.++.|+
T Consensus       112 G-~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~  190 (385)
T KOG1034|consen  112 G-YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS  190 (385)
T ss_pred             c-ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence            4 4444567777788888899999999999999999999999999999999999988876654   46789999999999


Q ss_pred             CCCCEEEEEEecCeEEEEECCCccceeccc--------------------------ccccCCCeEEEEECCCCCeEEEEe
Q psy13076        272 PSGSHFASAGFDGKVFLYDGASADLVSELG--------------------------NPAHKGGVYAVAWKPDGTQLLTAS  325 (423)
Q Consensus       272 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~--------------------------~~~~~~~i~~l~~~~~~~~l~s~s  325 (423)
                      ++|.++++++.|.++++|++...+....+.                          ...|...|.|+.|-  |+++++-|
T Consensus       191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSks  268 (385)
T KOG1034|consen  191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKS  268 (385)
T ss_pred             CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecc
Confidence            999999999999999999987432211110                          11344455555553  67999999


Q ss_pred             CCCcEEEEec-CCcceee-------------eeeeCc-eeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceE-Ee-
Q psy13076        326 GDKTCKLWDI-ETKSAVS-------------EFLMGN-QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR-VI-  388 (423)
Q Consensus       326 ~d~~i~iwd~-~~~~~i~-------------~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~-~~-  388 (423)
                      -++.|..|.. +-.+.+.             ++.... ..-...+++.+-.+.|+.|...|.+++||+...+.+.. ++ 
T Consensus       269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~  348 (385)
T KOG1034|consen  269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT  348 (385)
T ss_pred             cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE
Confidence            9999999987 2222211             111100 01122344445678899999999999999987655321 11 


Q ss_pred             -ccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        389 -KGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       389 -~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                       ..-...|+..+||.|+..|+...+|++|.-||-
T Consensus       349 ~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  349 HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             eccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence             122356999999999999999999999999984

>KOG0303|consensus

Probab=99.82  E-value=2.5e-18  Score=148.24  Aligned_cols=207  Identities=24%  Similarity=0.327  Sum_probs=165.8

Q ss_pred             ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce-------eeeeccccccCeEEEEECCCCC-EEEEEEecC
Q psy13076        213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-------FKMTKQEHSRFVQAVRYSPSGS-HFASAGFDG  284 (423)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~-------~~~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg  284 (423)
                      ..+-+|..++..++|+|-+...+|+||.|.+|.+|..+...       ....+.+|...|..++|+|... .|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            34568999999999999999999999999999999876543       2345678999999999999864 689999999


Q ss_pred             eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEE
Q psy13076        285 KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL  364 (423)
Q Consensus       285 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l  364 (423)
                      .|.+|+..+++.+.++.   |...|.++.|+.||.+|++.+.|++|||||.++++.+.+-..+...+.....++.+|+.+
T Consensus       155 ~v~iWnv~tgeali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             eEEEEeccCCceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            99999999999877764   899999999999999999999999999999999999888755555555666667788855


Q ss_pred             EEEe---CCCcEEEEecCCCCCceEEe-ccCCCceeEEEecCCCCeEE-EecCCCcEEEeeCC
Q psy13076        365 LTVS---LSGFISYLDVNNPSTPIRVI-KGHNKPITALALSPDRGTVF-TGSHDGFITRWNAK  422 (423)
Q Consensus       365 ~~~~---~~~~i~~~~~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~l~-s~s~D~~i~~W~~~  422 (423)
                      .+|.   .++++-+||..+.+.++... -.-+..|.-==+-||.++|. .|=.|+.||.|.+.
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            5553   35679999988766653321 12344566556688988875 55579999998754

>KOG1188|consensus

Probab=99.82  E-value=2.4e-18  Score=145.79  Aligned_cols=290  Identities=16%  Similarity=0.263  Sum_probs=184.5

Q ss_pred             cceeeEEEE-----eC--CEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCC--CCeEEEecCCCceEEeec
Q psy13076          6 EDQQVSCLW-----QG--DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD--RGTVFTGSHDGFITRWNA   76 (423)
Q Consensus         6 ~~~~~~~~~-----~~--~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~l~sg~~D~~i~vW~~   76 (423)
                      +++|+....     +|  ..+|++...|.|+++|+.+ .+....|++|...++.+.|..+  ...+.||+.||+||+||+
T Consensus        23 ~~~~Lk~~~q~~~~~~~e~~vav~lSngsv~lyd~~t-g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~  101 (376)
T KOG1188|consen   23 EDFCLKYDIQEQVKDGFETAVAVSLSNGSVRLYDKGT-GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI  101 (376)
T ss_pred             ccceeeccchhhhccCcceeEEEEecCCeEEEEeccc-hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence            455666543     22  4688899999999999987 5567789999999999999873  457999999999999999


Q ss_pred             CCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCc-ceEEEEEECCCCCEEEEEcc----
Q psy13076         77 KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYIASGDI----  151 (423)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~-~~i~~~~~sp~~~~l~s~~~----  151 (423)
                      .+......+.                                        +++|. .+-.+++....++.+++|..    
T Consensus       102 Rs~~e~a~~~----------------------------------------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s  141 (376)
T KOG1188|consen  102 RSQAESARIS----------------------------------------WTQQSGTPFICLDLNCKKNIIACGTELTRS  141 (376)
T ss_pred             ecchhhhhee----------------------------------------ccCCCCCcceEeeccCcCCeEEeccccccC
Confidence            7643222111                                        11222 23344555556666776643    


Q ss_pred             CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCC
Q psy13076        152 SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSR  231 (423)
Q Consensus       152 d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  231 (423)
                      |..+.+||+++.++.+....                                            ..|...|+++.|+|+.
T Consensus       142 ~A~v~lwDvR~~qq~l~~~~--------------------------------------------eSH~DDVT~lrFHP~~  177 (376)
T KOG1188|consen  142 DASVVLWDVRSEQQLLRQLN--------------------------------------------ESHNDDVTQLRFHPSD  177 (376)
T ss_pred             ceEEEEEEeccccchhhhhh--------------------------------------------hhccCcceeEEecCCC
Confidence            56788999876554221111                                            1355567777777777


Q ss_pred             CeeEEEEeCCCeEEEEcCCCce---eeeeccccccCeEEEEECCCC-CEEEEEEecCeEEEEECCCccceecccccccCC
Q psy13076        232 PFRIITGSEDNTIAVFEGPPFK---FKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAHKG  307 (423)
Q Consensus       232 ~~~~~s~s~d~~i~~~~~~~~~---~~~~~~~~~~~i~~l~~s~~g-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  307 (423)
                      +.++++||.||.+.+||.....   .......+...|-.+.|..++ +.+.+-+......+|+++.+.....+..+.-..
T Consensus       178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~  257 (376)
T KOG1188|consen  178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA  257 (376)
T ss_pred             CCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh
Confidence            7889999999999999975432   112233455668889998877 458888889999999998877544443210000


Q ss_pred             ----------CeEEEEECCCCCeEEEEeC-CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEE
Q psy13076        308 ----------GVYAVAWKPDGTQLLTASG-DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL  376 (423)
Q Consensus       308 ----------~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~  376 (423)
                                .+...--..++..++.++. -++..++-+.                                        
T Consensus       258 ~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~----------------------------------------  297 (376)
T KOG1188|consen  258 DDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLV----------------------------------------  297 (376)
T ss_pred             hhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEee----------------------------------------
Confidence                      0000000011222222222 2222222111                                        


Q ss_pred             ecC--CCCCceEEecc-CCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        377 DVN--NPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       377 ~~~--~~~~~~~~~~~-h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      +..  ....++..+.| |..-|+++.|.-.+.++.|||.||.+.+|.
T Consensus       298 ~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  298 DTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             ecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            001  11233345555 777899999999999999999999999997

>KOG0270|consensus

Probab=99.81  E-value=3.7e-18  Score=149.33  Aligned_cols=309  Identities=17%  Similarity=0.190  Sum_probs=200.9

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEecc--CCCCceeeccccc----CceeEEEEeC-------CCCeEEEecCCCceEEee
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVN--NPSTPIRVIKGHN----KPITALALSP-------DRGTVFTGSHDGFITRWN   75 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~--~~~~~~~~~~gh~----~~V~~l~~~~-------~~~~l~sg~~D~~i~vW~   75 (423)
                      -+.+-|.+..|++|-....+..+++.  ++..+- .+--|.    ..-.|++|.-       -|.++|.|..|..|.|||
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD  208 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD  208 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc-eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence            45566778888888777777777643  322222 233232    2224666632       367999999999999999


Q ss_pred             cCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC-CCEEEEEccCCc
Q psy13076         76 AKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGK  154 (423)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~~~d~~  154 (423)
                      +.-..-.         .+++.-++...+.           . -..++-...-++|+..|-.+.|... ...|||||.|.+
T Consensus       209 LDI~d~v---------~P~~~LGs~~sk~-----------~-~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T  267 (463)
T KOG0270|consen  209 LDIVDAV---------LPCVTLGSKASKK-----------K-KKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT  267 (463)
T ss_pred             ccccccc---------ccceeechhhhhh-----------h-hhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence            8632110         0111111000000           0 0001111233589999888888764 568899999999


Q ss_pred             EEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCee
Q psy13076        155 VRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFR  234 (423)
Q Consensus       155 i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  234 (423)
                      |++||+.++++.....  .++.+|.++.|+|....++..|.-. ....+.+..........-.-...|..++|.|.....
T Consensus       268 V~lWD~~~g~p~~s~~--~~~k~Vq~l~wh~~~p~~LLsGs~D-~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~  344 (463)
T KOG0270|consen  268 VKLWDVDTGKPKSSIT--HHGKKVQTLEWHPYEPSVLLSGSYD-GTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENS  344 (463)
T ss_pred             EEEEEcCCCCcceehh--hcCCceeEEEecCCCceEEEecccc-ceEEeeeccCccccCceEEeccceEEEEecCCCcee
Confidence            9999999988754433  4578999999999877666655433 223343332111111111123457788999998888


Q ss_pred             EEEEeCCCeEEEEcCCCc-eeeeeccccccCeEEEEECCCCC-EEEEEEecCeEEEEECCCccceecccccccCCCeEEE
Q psy13076        235 IITGSEDNTIAVFEGPPF-KFKMTKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAV  312 (423)
Q Consensus       235 ~~s~s~d~~i~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l  312 (423)
                      ++++..||+++-+|.+.. +..++...|...|.++++++.-. ++++++.|+.+++|++.....-......-..+...|+
T Consensus       345 f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~  424 (463)
T KOG0270|consen  345 FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF  424 (463)
T ss_pred             EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence            999999999999998765 78889999999999999998765 6889999999999997643321111111112346678


Q ss_pred             EECCCCC-eEEEEeCCCcEEEEecCCcceee
Q psy13076        313 AWKPDGT-QLLTASGDKTCKLWDIETKSAVS  342 (423)
Q Consensus       313 ~~~~~~~-~l~s~s~d~~i~iwd~~~~~~i~  342 (423)
                      ++.|+-. .|+.|+..+.+++||+.+...+.
T Consensus       425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             ccCCCcceEEEecCccceEEEeecccChhHH
Confidence            8888764 56677777789999998765543

>KOG0642|consensus

Probab=99.80  E-value=8.2e-19  Score=157.80  Aligned_cols=268  Identities=20%  Similarity=0.319  Sum_probs=177.1

Q ss_pred             ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         39 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        39 ~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      +..+++.|.+.|+.++|.|..+.|++++.|+++++|+++...-         .                .....      
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~---------s----------------~~~~~------  334 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK---------S----------------AEKDV------  334 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC---------c----------------cccce------
Confidence            3447889999999999999999999999999999999954100         0                00011      


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                         +...+|.+|.++|.++++.++++++.+|+.||+|+.|++....                   .|+..+         
T Consensus       335 ---epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~-------------------dp~ds~---------  383 (577)
T KOG0642|consen  335 ---EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQ-------------------DPDDSY---------  383 (577)
T ss_pred             ---eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCC-------------------Cccccc---------
Confidence               2234678999999999999999999999999999999975111                   011000         


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee-eeeccccccCeEEEEECCCCCEE
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-KMTKQEHSRFVQAVRYSPSGSHF  277 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l  277 (423)
                              +.......+.+|...+..+++++.... |++|+.||+++.|+...... ...........+++.+.......
T Consensus       384 --------dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~  454 (577)
T KOG0642|consen  384 --------DPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAH  454 (577)
T ss_pred             --------Ccchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHh
Confidence                    001112235577778888888887664 89999999999998433221 11111112233445443322111


Q ss_pred             EEEE-ecCeEEEEECCCccceecccc-----cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeE
Q psy13076        278 ASAG-FDGKVFLYDGASADLVSELGN-----PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVE  351 (423)
Q Consensus       278 ~s~s-~dg~i~vwd~~~~~~~~~~~~-----~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~  351 (423)
                      ..++ .-+.--+.+......+..+..     ......+.-+.++|.+.+.+++..|+.|+++|..+++.+          
T Consensus       455 ~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l----------  524 (577)
T KOG0642|consen  455 SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL----------  524 (577)
T ss_pred             hhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc----------
Confidence            1111 112222223332222222211     112234667888999999999999999999998776543          


Q ss_pred             eeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        352 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       352 ~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                                                        +....|...++++++-|++.+|++++.||.+++|.+
T Consensus       525 ----------------------------------~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  525 ----------------------------------HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             ----------------------------------hheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence                                              334567888999999999999999999999999976

>KOG1587|consensus

Probab=99.80  E-value=2.4e-17  Score=155.27  Aligned_cols=277  Identities=18%  Similarity=0.288  Sum_probs=194.5

Q ss_pred             ccceEEEEeccCCCCceeecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCC
Q psy13076         24 LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG  102 (423)
Q Consensus        24 ~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (423)
                      .++.+.+|++.++..|..++.. ..+|+++.|+|. ..+|+.|..+|.|-+||+..+....                +.+
T Consensus       220 ~~~~~~vW~~~~p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~----------------~s~  282 (555)
T KOG1587|consen  220 PDGVLLVWSLKNPNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP----------------PSG  282 (555)
T ss_pred             CCceEEEEecCCCCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC----------------Ccc
Confidence            3458999999999888888874 679999999995 4578889999999999997643210                000


Q ss_pred             CeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCC--EEEEEccCCcEEEEEcCCCce-----eEEeeec---
Q psy13076        103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF--YIASGDISGKVRIWDTVNKEH-----ILKNEFH---  172 (423)
Q Consensus       103 ~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l~s~~~d~~i~vwd~~~~~~-----~~~~~~~---  172 (423)
                                          +......|..+++.+.|..+..  -+++++.||.|..|+++.-..     ......+   
T Consensus       283 --------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~  342 (555)
T KOG1587|consen  283 --------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQ  342 (555)
T ss_pred             --------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccc
Confidence                                0011234777888888866544  499999999999998764221     0111110   


Q ss_pred             --CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEe--ecCC-----cceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076        173 --PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM--SETG-----TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT  243 (423)
Q Consensus       173 --~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~  243 (423)
                        .....+++++|.+.....+++|...+...+.-.  ....     +.+.....|..++..+.++|-.+..+++++ |-+
T Consensus       343 ~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~  421 (555)
T KOG1587|consen  343 QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWT  421 (555)
T ss_pred             ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cce
Confidence              123457899999987777777766543222111  1111     112244567789999999998887777777 999


Q ss_pred             EEEEcCC-CceeeeeccccccCeEEEEECCCCC-EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE
Q psy13076        244 IAVFEGP-PFKFKMTKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL  321 (423)
Q Consensus       244 i~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  321 (423)
                      +++|... .......+..+...++.++|||--. .|+++..||.|.+||+......-......+......+.|++.|+.|
T Consensus       422 vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~l  501 (555)
T KOG1587|consen  422 VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLL  501 (555)
T ss_pred             eEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEE
Confidence            9999865 4455566677778899999999875 6788888999999998765433222222344556788899999999


Q ss_pred             EEEeCCCcEEEEecCCc
Q psy13076        322 LTASGDKTCKLWDIETK  338 (423)
Q Consensus       322 ~s~s~d~~i~iwd~~~~  338 (423)
                      +.|...|++++|++...
T Consensus       502 avGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  502 AVGDANGTTHILKLSES  518 (555)
T ss_pred             EEecCCCcEEEEEcCch
Confidence            99999999999998643

>KOG0307|consensus

Probab=99.80  E-value=2.2e-19  Score=173.93  Aligned_cols=204  Identities=20%  Similarity=0.341  Sum_probs=156.8

Q ss_pred             cceeEEEEecCCCe---eEEEEeCCCeEEEEcCCCc------eeeeeccccccCeEEEEECCCCC-EEEEEEecCeEEEE
Q psy13076        220 KPINSCDFKPSRPF---RIITGSEDNTIAVFEGPPF------KFKMTKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLY  289 (423)
Q Consensus       220 ~~i~~~~~~~~~~~---~~~s~s~d~~i~~~~~~~~------~~~~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vw  289 (423)
                      ...+.++|.+.++.   +|+.|..||.|.+|+....      ....+...|.+.|..+.|+|... .||+|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            45678888887765   5889999999999985432      23345678999999999999876 99999999999999


Q ss_pred             ECCCccceecccccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecCCcceeeeeeeCcee-EeeEEEEEecC-cEEEE
Q psy13076        290 DGASADLVSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSAVSEFLMGNQV-EDQQVSCLWQG-DYLLT  366 (423)
Q Consensus       290 d~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~-~~~~~~~~~~g-~~l~~  366 (423)
                      |+...+.-.......-...|.+++|+..- ..|++++.++++.|||++.++.+-.+...... ....+.-.|++ ..+++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            99876655444333345779999998754 56788899999999999988766555333221 11112222333 44566


Q ss_pred             EeCCC---cEEEEecCCCCCceEEeccCCCceeEEEecCCC-CeEEEecCCCcEEEeeCCC
Q psy13076        367 VSLSG---FISYLDVNNPSTPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       367 ~~~~~---~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~-~~l~s~s~D~~i~~W~~~~  423 (423)
                      ++.|.   .|.+||++....+++++.+|++.|.+++|++.+ .+|+|++.|+.|.+|+.+|
T Consensus       225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence            65543   589999999999999999999999999999977 7899999999999999876

>KOG1963|consensus

Probab=99.80  E-value=1.3e-16  Score=150.99  Aligned_cols=329  Identities=16%  Similarity=0.225  Sum_probs=214.4

Q ss_pred             ceeeEEEEeCCEEEEEeccceEEEEe-cc--CCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076          7 DQQVSCLWQGDYLLTVSLSGFISYLD-VN--NPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~dg~i~~~d-~~--~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      -++++|+|-++++|++..||.|.+|. ..  ......+.|+=|..+|++++|+++|.+|+|||..|.+-+|.+++++ ..
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kq  286 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQ  286 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cc
Confidence            47899999999999999999999995 22  3344566788899999999999999999999999999999999876 23


Q ss_pred             cccCCCCCCceEEeeCCCCCeEEE-ecCCeEEEEecCCCcccccc-----------cCCcceEEEEEECCCCCEEEEEcc
Q psy13076         84 TLPRTQRGQPIVLGGDPKGKNFLY-TNGNSVIIRNIENPAISDIY-----------TEHSCAVNVAKYSPSGFYIASGDI  151 (423)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~-----------~~h~~~i~~~~~sp~~~~l~s~~~  151 (423)
                      -|++ ..+...-+..+|++..+.. ..++.+.+-...+-......           ++..+-.+.++++|.-+.++-.+.
T Consensus       287 fLPR-Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~  365 (792)
T KOG1963|consen  287 FLPR-LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH  365 (792)
T ss_pred             cccc-cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence            3332 2334444666788876655 45677666554332222211           123455677889997677777888


Q ss_pred             CCcEEEEEcCCCceeEEeee---cCCC------CCeeEEEECCCCCeEEEEEcCCc--------eeeEEEeecCCccee-
Q psy13076        152 SGKVRIWDTVNKEHILKNEF---HPIG------GPIKDIAWSPDNQRMVVVGEGRE--------RFGHVFMSETGTSVG-  213 (423)
Q Consensus       152 d~~i~vwd~~~~~~~~~~~~---~~~~------~~v~~v~~s~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-  213 (423)
                      .+.|++||+.+.+.+.+...   ....      -.+++++.+..|.++++...-.+        .....|..+....-. 
T Consensus       366 ~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~  445 (792)
T KOG1963|consen  366 PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI  445 (792)
T ss_pred             CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE
Confidence            99999999987765543321   1111      24677888888999988764322        223345444322221 


Q ss_pred             ---c-ccCCCcce-eEEEEecCCCeeEEEEeCCCeEEEEcCCC----------ceeeeeccccccCeEEEEECCCCCEEE
Q psy13076        214 ---E-ISGQSKPI-NSCDFKPSRPFRIITGSEDNTIAVFEGPP----------FKFKMTKQEHSRFVQAVRYSPSGSHFA  278 (423)
Q Consensus       214 ---~-~~~~~~~i-~~~~~~~~~~~~~~s~s~d~~i~~~~~~~----------~~~~~~~~~~~~~i~~l~~s~~g~~l~  278 (423)
                         . ...|...+ ..+..+|....++++++.|+.+++|....          +.+.....-|+.++++++|+.||..++
T Consensus       446 L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla  525 (792)
T KOG1963|consen  446 LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA  525 (792)
T ss_pred             EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE
Confidence               1 12344333 34445555555799999999999996521          223333334788899999999996554


Q ss_pred             EEEecCeEEEEECCCccce-ecccccccCCCeEEEEE----CCCCCeEEEEeCCCcEEEEecCCcceee
Q psy13076        279 SAGFDGKVFLYDGASADLV-SELGNPAHKGGVYAVAW----KPDGTQLLTASGDKTCKLWDIETKSAVS  342 (423)
Q Consensus       279 s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~i~~l~~----~~~~~~l~s~s~d~~i~iwd~~~~~~i~  342 (423)
                       .+.|+.|.+||..+...+ .....  ....+..+.+    -.++.  +....-+.+.+|++.+..++.
T Consensus       526 -~s~~~~Itiwd~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  526 -VSFDDTITIWDYDTKNELLCTEGS--RNWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIW  589 (792)
T ss_pred             -EecCCEEEEecCCChhhhhccccc--cccchHhHhhhcccccccc--eeeccCceEehHhhhhhheec
Confidence             568899999998874322 22211  1111222222    22332  233445789999998877655

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=3.8e-16  Score=143.41  Aligned_cols=280  Identities=13%  Similarity=0.236  Sum_probs=166.3

Q ss_pred             EEEEeccceEEEEeccCCCC--ceeecccccCceeEEEEeCCCCeEEEe-cCCCceEEeecC-CcceeecccCCCCCCce
Q psy13076         19 LLTVSLSGFISYLDVNNPST--PIRVIKGHNKPITALALSPDRGTVFTG-SHDGFITRWNAK-TEYIFATLPRTQRGQPI   94 (423)
Q Consensus        19 ~~~~~~dg~i~~~d~~~~~~--~~~~~~gh~~~V~~l~~~~~~~~l~sg-~~D~~i~vW~~~-~~~~~~~~~~~~~~~~~   94 (423)
                      .++...|+.|.+||+.+..+  .+.++. +.+....++++|++++|+.+ ..++.|.+|+++ ++.+...-.....+.+.
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            34457899999999964333  334444 34567789999999988665 458999999986 33331111111234567


Q ss_pred             EEeeCCCCCeEEEec--CCeEEEEecCC-Ccc---cccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEEEcCCCceeE
Q psy13076         95 VLGGDPKGKNFLYTN--GNSVIIRNIEN-PAI---SDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVNKEHIL  167 (423)
Q Consensus        95 ~~~~~~~~~~~~~~~--~~~~~i~~~~~-~~~---~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vwd~~~~~~~~  167 (423)
                      .+.++|+++.++.++  ++.+.++++++ +..   ...+. +....+.++++|+++++++++ .++.|.+||+.+...+.
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence            788999998777654  57888998863 322   22222 223467788999999886555 56999999987532221


Q ss_pred             E-----eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc-ceecccCCCcceeEEEEecCCCeeEEEEeCC
Q psy13076        168 K-----NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT-SVGEISGQSKPINSCDFKPSRPFRIITGSED  241 (423)
Q Consensus       168 ~-----~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d  241 (423)
                      .     ... ........++|+|++++++++...... ..++..+... .+       ..+..+.               
T Consensus       163 ~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~-------~~~~~~~---------------  218 (330)
T PRK11028        163 AQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEI-------ECVQTLD---------------  218 (330)
T ss_pred             ccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCE-------EEEEEEe---------------
Confidence            0     011 112334677888888877665432211 1222221100 00       0000000               


Q ss_pred             CeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe-cCeEEEEECCCccceecc-cccccCCCeEEEEECCCCC
Q psy13076        242 NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF-DGKVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGT  319 (423)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~-dg~i~vwd~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~  319 (423)
                            ..+.     . ..+......+.++|+|++++++.. ++.|.+|+..+.....++ ....-......++|+|+|+
T Consensus       219 ------~~p~-----~-~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~  286 (330)
T PRK11028        219 ------MMPA-----D-FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK  286 (330)
T ss_pred             ------cCCC-----c-CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC
Confidence                  0000     0 011123346889999999888754 789999998543321111 1000012356799999999


Q ss_pred             eEEEEeC-CCcEEEEecC
Q psy13076        320 QLLTASG-DKTCKLWDIE  336 (423)
Q Consensus       320 ~l~s~s~-d~~i~iwd~~  336 (423)
                      +|+++.. +++|.+|++.
T Consensus       287 ~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        287 YLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEEEEccCCcEEEEEEc
Confidence            9998765 8999999875

>KOG2919|consensus

Probab=99.79  E-value=2.7e-17  Score=138.48  Aligned_cols=274  Identities=19%  Similarity=0.276  Sum_probs=184.5

Q ss_pred             EEEE--eCCEEEEEeccceEEEEecc-----CC-CCce-----eeccc-ccCceeEEEEe-------CCCCeEEEecCCC
Q psy13076         11 SCLW--QGDYLLTVSLSGFISYLDVN-----NP-STPI-----RVIKG-HNKPITALALS-------PDRGTVFTGSHDG   69 (423)
Q Consensus        11 ~~~~--~~~~~~~~~~dg~i~~~d~~-----~~-~~~~-----~~~~g-h~~~V~~l~~~-------~~~~~l~sg~~D~   69 (423)
                      .|-|  ||.-|++-+.|..+++|++-     .. ..+.     -+++- ..+.|-...|-       |+..++++.+.|.
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~  133 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ  133 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence            3555  99999999999999999751     10 1111     11111 12345555553       5667888888999


Q ss_pred             ceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCc---ceEEEEEECCCCCEE
Q psy13076         70 FITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS---CAVNVAKYSPSGFYI  146 (423)
Q Consensus        70 ~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~---~~i~~~~~sp~~~~l  146 (423)
                      -|++||.-++++..+....                                        .|.   ....+++|+|||.+|
T Consensus       134 PIh~wdaftG~lraSy~~y----------------------------------------dh~de~taAhsL~Fs~DGeql  173 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRAY----------------------------------------DHQDEYTAAHSLQFSPDGEQL  173 (406)
T ss_pred             ceeeeeccccccccchhhh----------------------------------------hhHHhhhhheeEEecCCCCeE
Confidence            9999998877654432110                                        121   234689999999998


Q ss_pred             EEEccCCcEEEEEcCC-Ccee--EE---eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCc
Q psy13076        147 ASGDISGKVRIWDTVN-KEHI--LK---NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK  220 (423)
Q Consensus       147 ~s~~~d~~i~vwd~~~-~~~~--~~---~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (423)
                      ..| ....||++|+.. +...  ..   ....+..+-+.+++|+|....++.++.-.... -++.......+..+-+|..
T Consensus       174 faG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~-giy~~~~~~pl~llggh~g  251 (406)
T KOG2919|consen  174 FAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRV-GIYNDDGRRPLQLLGGHGG  251 (406)
T ss_pred             eec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccccee-eeEecCCCCceeeecccCC
Confidence            866 578899999832 2111  00   10122346688999999777555554433322 3555666677777889999


Q ss_pred             ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee-eeecccccc-CeE--EEEECCCCCEEEEEEecCeEEEEECCC-cc
Q psy13076        221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-KMTKQEHSR-FVQ--AVRYSPSGSHFASAGFDGKVFLYDGAS-AD  295 (423)
Q Consensus       221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~-~~~~~~~~~-~i~--~l~~s~~g~~l~s~s~dg~i~vwd~~~-~~  295 (423)
                      -|+.+.|.++++..+..+-.+..|..||++.... ...+..|.. .-.  .....|+|+.|++|+.||.|++||++. +.
T Consensus       252 GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  252 GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             CeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence            9999999999986555555688999999865432 223333332 112  245679999999999999999999988 55


Q ss_pred             ceecccccccCCCeEEEEECCCCCeEEEEeCCC
Q psy13076        296 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       296 ~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                      ....+  ..|...+..++++|-.+.+++++...
T Consensus       332 ~~sv~--~~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  332 EVSVT--GNYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             ccccc--ccccccccceecCcccceeeeccCce
Confidence            44444  35788899999999999999987653

>KOG0771|consensus

Probab=99.78  E-value=7.3e-18  Score=146.87  Aligned_cols=201  Identities=20%  Similarity=0.313  Sum_probs=142.2

Q ss_pred             eEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCC
Q psy13076         51 TALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEH  130 (423)
Q Consensus        51 ~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h  130 (423)
                      .+++|+.+|..|++|+.||++|+|++.+-..+                                          .....|
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~------------------------------------------l~e~~~  185 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI------------------------------------------LEEIAH  185 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhh------------------------------------------hhhHhh
Confidence            67899999999999999999999997542111                                          123468


Q ss_pred             cceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCC--eEEEEEcCCceeeEEEeecC
Q psy13076        131 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ--RMVVVGEGRERFGHVFMSET  208 (423)
Q Consensus       131 ~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~~~~~~~~~~~~~~~~~~~~  208 (423)
                      ..+|..+.|+|||+++++-+.| ..+||+..++..+..............+.|+.|+.  .+.++               
T Consensus       186 ~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~la---------------  249 (398)
T KOG0771|consen  186 HAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLA---------------  249 (398)
T ss_pred             cCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEE---------------
Confidence            8899999999999999999999 99999998875443322111223344556665541  11111               


Q ss_pred             CcceecccCCCcceeEEEEecCCCeeEEEEeCCCe-----EEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec
Q psy13076        209 GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT-----IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD  283 (423)
Q Consensus       209 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~-----i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d  283 (423)
                                                 +....-+.     +.+|+....-...+.....+.|++++++++|+++|.|+-|
T Consensus       250 ---------------------------a~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  250 ---------------------------ASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             ---------------------------EecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence                                       00111111     3334332111122222334569999999999999999999


Q ss_pred             CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076        284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~  337 (423)
                      |.|.|++..+.+.++..+ .+|...|+.+.|+|+.+++++-+.|.++.+.-+.-
T Consensus       303 GsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999998888766555 47999999999999999999999999988877653

>KOG4497|consensus

Probab=99.78  E-value=4e-17  Score=137.81  Aligned_cols=344  Identities=13%  Similarity=0.159  Sum_probs=212.6

Q ss_pred             EEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEe--cCCeEEEEecCCCcccccccC
Q psy13076         52 ALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYT--NGNSVIIRNIENPAISDIYTE  129 (423)
Q Consensus        52 ~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~  129 (423)
                      -+.|||+|+++|+.+.- .+-|=|.++-.+...+..-  .+..-+.+..+....++.  .+..+.+|++..++.......
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl--dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde   89 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL--DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE   89 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH--HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence            47899999999999876 6777788775443322111  111223333444344432  355789999998888777777


Q ss_pred             CcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce-eeEEEeec
Q psy13076        130 HSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER-FGHVFMSE  207 (423)
Q Consensus       130 h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~-~~~~~~~~  207 (423)
                      -...+.+++|||||+.+ .+...|-.|.+|.+.+.+.....   .....+..++|+|||++.+.++.-+.+ +..+..-.
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~---~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~  166 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP---HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK  166 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec---ccccCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence            78889999999999655 56777999999999887654321   123446889999999998876532110 11111001


Q ss_pred             CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEE
Q psy13076        208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF  287 (423)
Q Consensus       208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~  287 (423)
                      .-..+++.+...-..+.+.|+|+++.          +.+||..-..-.. ..+-.-.+..+.|+|.+++|+.|++|+.++
T Consensus       167 ~W~ll~~f~~dT~DltgieWsPdg~~----------laVwd~~Leykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lr  235 (447)
T KOG4497|consen  167 AWILLKEFKLDTIDLTGIEWSPDGNW----------LAVWDNVLEYKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLR  235 (447)
T ss_pred             HHHHHHhcCCCcccccCceECCCCcE----------EEEecchhhheee-eeeeccceeEEEeccccceEEeeccchhhh
Confidence            11123344445556778889998765          4567643111111 111223477899999999999999999988


Q ss_pred             EEECCCccc--------------------------------------------------ee----------ccc----cc
Q psy13076        288 LYDGASADL--------------------------------------------------VS----------ELG----NP  303 (423)
Q Consensus       288 vwd~~~~~~--------------------------------------------------~~----------~~~----~~  303 (423)
                      +-+--+.+.                                                  ..          .+.    .+
T Consensus       236 vlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~p  315 (447)
T KOG4497|consen  236 VLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFP  315 (447)
T ss_pred             hhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCC
Confidence            754100000                                                  00          000    00


Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCC--CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCC
Q psy13076        304 AHKGGVYAVAWKPDGTQLLTASGD--KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP  381 (423)
Q Consensus       304 ~~~~~i~~l~~~~~~~~l~s~s~d--~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~  381 (423)
                      .-.-++--++|++|..+++|--+.  ..+-+||++..++...+...++.....+  .|.--.|+.+.....+++|-...+
T Consensus       316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~W--dP~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEW--DPGRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEe--CCCCceEEEEcCCceEEEEcCCCc
Confidence            012246679999999999886332  3588999998776444443333332222  123445777777777888866542


Q ss_pred             CCceEEeccCCCceeEEEecCCCCeEEEecCCCcE
Q psy13076        382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI  416 (423)
Q Consensus       382 ~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i  416 (423)
                      . .+. ..+..=.|..+.|.-+|..++-.+.|-..
T Consensus       394 ~-~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDafc  426 (447)
T KOG4497|consen  394 R-VVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAFC  426 (447)
T ss_pred             e-EEe-cCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence            2 121 12222469999999999999999988654

>KOG1524|consensus

Probab=99.78  E-value=2.8e-17  Score=147.10  Aligned_cols=263  Identities=13%  Similarity=0.292  Sum_probs=176.7

Q ss_pred             cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc--eeecccCCCCCCceEEeeCC------CCCeEEEecCCeEEEE
Q psy13076         45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY--IFATLPRTQRGQPIVLGGDP------KGKNFLYTNGNSVIIR  116 (423)
Q Consensus        45 gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~  116 (423)
                      .|...|.|+.|+.+...+.+++.+..++-||+.+..  +....+.... ...-+....      ....++++++....+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~p-t~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVP-TDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCC-ccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            366778899999888877776655555555554322  1111110000 000011000      1123344444444333


Q ss_pred             ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076        117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                       -+++++......|.+.|.+.+|+|||.-++|+++||.|++|.-.   .++.....+...+|.+++|.|+...++.+..+
T Consensus        91 -~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs---GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~  166 (737)
T KOG1524|consen   91 -NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS---GMLRSTVVQNEESIRCARWAPNSNSIVFCQGG  166 (737)
T ss_pred             -cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc---chHHHHHhhcCceeEEEEECCCCCceEEecCC
Confidence             24677778888999999999999999999999999999999842   22223333445789999999998888777544


Q ss_pred             CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCE
Q psy13076        197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH  276 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~  276 (423)
                      .-   .+........+-..+.|...|.+++|+|..+. +++|+.|-..++||... ........|..+|++++|+|+ +.
T Consensus       167 h~---~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l-I~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd-~~  240 (737)
T KOG1524|consen  167 HI---SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI-IASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPE-KD  240 (737)
T ss_pred             eE---EEeecccccceeEEeccCcEEEEeecCccccc-eeecCCceeEEeecccC-cccccCChhccceeeeeeccc-cc
Confidence            21   12222222333445678889999999998875 89999999999999653 334566788999999999999 67


Q ss_pred             EEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEE
Q psy13076        277 FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKL  332 (423)
Q Consensus       277 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~i  332 (423)
                      ++.+|.. .++            +.. ...+.|..++|+|||..++.|+..|.+.+
T Consensus       241 ~~v~S~n-t~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  241 YLLWSYN-TAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeeee-eee------------ecC-CCccceEEEEEcCCCceeeccccCceEEE
Confidence            7777653 222            221 24578999999999999999988887654

>KOG1517|consensus

Probab=99.78  E-value=5.7e-17  Score=155.73  Aligned_cols=300  Identities=16%  Similarity=0.258  Sum_probs=203.0

Q ss_pred             cccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCc
Q psy13076         43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA  122 (423)
Q Consensus        43 ~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  122 (423)
                      +.+...+-..+.|+|-.+.++++...-+|+|||.+.++++..+....                                 
T Consensus      1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~--------------------------------- 1106 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA--------------------------------- 1106 (1387)
T ss_pred             HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC---------------------------------
Confidence            34445577788999988899999888899999999887765543211                                 


Q ss_pred             ccccccCCcceEEEEEECC--CCCEEEEEccCCcEEEEEcCCC---ceeEEeeecC-------CCCCeeEEEECCCCCeE
Q psy13076        123 ISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNK---EHILKNEFHP-------IGGPIKDIAWSPDNQRM  190 (423)
Q Consensus       123 ~~~~~~~h~~~i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~-------~~~~v~~v~~s~~~~~~  190 (423)
                            .....|+.+.+-.  |...+++|+.||.||||+-...   +..+-..+.+       ..+.-.-++|.....++
T Consensus      1107 ------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~L 1180 (1387)
T KOG1517|consen 1107 ------FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHL 1180 (1387)
T ss_pred             ------CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeE
Confidence                  0112455555543  5678999999999999974321   1111111111       11111346788777777


Q ss_pred             EEEEcCCceeeEEEeecCCcceeccc-CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc---eeeeeccccccC--
Q psy13076        191 VVVGEGRERFGHVFMSETGTSVGEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF---KFKMTKQEHSRF--  264 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~--  264 (423)
                      ++.|+  .+..++|+.+.......+. +....++++.-+.....++++|..||.+++||.+--   ........|...  
T Consensus      1181 l~tGd--~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1181 LVTGD--VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred             EecCC--eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence            77654  5677899988777766665 334455655444444456899999999999995421   233445566665  


Q ss_pred             eEEEEECCCCCE-EEEEEecCeEEEEECCCccceecccccccC--C-CeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076        265 VQAVRYSPSGSH-FASAGFDGKVFLYDGASADLVSELGNPAHK--G-GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA  340 (423)
Q Consensus       265 i~~l~~s~~g~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~-~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~  340 (423)
                      |..+.+.+.|-- |++|+.||.|++||++.......+....|-  + ..+++..|+....+|+|+. +.|+||++...+ 
T Consensus      1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~- 1336 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ- 1336 (1387)
T ss_pred             ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-
Confidence            999999998764 999999999999999875333333333333  3 4899999999999999988 999999986543 


Q ss_pred             eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        341 VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       341 i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      +..+..             ++.+                 ..+       -.+.+.|++|+|..-+||.|+.|.+|.+|.
T Consensus      1337 l~~~k~-------------n~~F-----------------~~q-------~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1337 LNIIKY-------------NPGF-----------------MGQ-------RIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             hccccc-------------Cccc-----------------ccC-------cCCCcceeeecchhHhhhhccCCceEEEee
Confidence            222210             0000                 011       123469999999999999999999999997


Q ss_pred             CC
Q psy13076        421 AK  422 (423)
Q Consensus       421 ~~  422 (423)
                      .+
T Consensus      1380 ~~ 1381 (1387)
T KOG1517|consen 1380 CE 1381 (1387)
T ss_pred             cC
Confidence            54

>KOG0644|consensus

Probab=99.78  E-value=1.7e-18  Score=162.18  Aligned_cols=280  Identities=17%  Similarity=0.246  Sum_probs=191.0

Q ss_pred             eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEE--ecCCeEEEEec
Q psy13076         41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLY--TNGNSVIIRNI  118 (423)
Q Consensus        41 ~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~  118 (423)
                      +.|.||...|-|+.|...|.++++|+.|..+|||..+++.++..+..+..... -++-+ ..+.++.  +.+..+++|.+
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~dit-dlavs-~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDIT-DLAVS-SNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccc-hhccc-hhhhhhhhcccCceEEEEec
Confidence            34679999999999999999999999999999999999999888765432221 11111 1222333  34556999999


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeec------CCCCCeeEEEECCCCCeEEE
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH------PIGGPIKDIAWSPDNQRMVV  192 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------~~~~~v~~v~~s~~~~~~~~  192 (423)
                      .++..+.++.||++.|++++|+|-.    +.+.||++++||..- +.   ..+.      ....-+.++.|..++..+++
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~---~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EP---RIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cc---cccCCCCCCcccccceeeeecccccccccc
Confidence            9999999999999999999999954    678899999999761 11   1111      01123445555555555554


Q ss_pred             EEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECC
Q psy13076        193 VGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP  272 (423)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~  272 (423)
                      ...+...-.+-+.        .+..+......+..+.+.+...+++-.+..+.+|+...+.+...+..|.+.+..+.++|
T Consensus       334 gs~d~ea~n~e~~--------~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp  405 (1113)
T KOG0644|consen  334 GSRDGEARNHEFE--------QLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP  405 (1113)
T ss_pred             ccCCcccccchhh--------HhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence            4332221111000        01111111122222222223355666677788888777766667778888999999999


Q ss_pred             CCCE-EEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076        273 SGSH-FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA  340 (423)
Q Consensus       273 ~g~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~  340 (423)
                      -... ..+++.||...|||...+..++.... +| +.+.+-+|+++|+.++..-..|.+.|.....++.
T Consensus       406 fn~ri~msag~dgst~iwdi~eg~pik~y~~-gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  406 FNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI-GH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             CCcHhhhhccCCCceEeeecccCCcceeeec-cc-ceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            7765 47789999999999988877765543 34 4566788999999999888889999988765543

>KOG1524|consensus

Probab=99.77  E-value=1.8e-16  Score=141.95  Aligned_cols=208  Identities=19%  Similarity=0.269  Sum_probs=154.6

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceE
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIV   95 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~   95 (423)
                      .+-++.++.||.+.+++..  .+..+...+|.+.|.+-.|+|||.-|+|.++||.||+|.-. |.+..++. +......+
T Consensus        75 ~d~~~i~s~DGkf~il~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~-Q~~~~v~c  150 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS--ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVV-QNEESIRC  150 (737)
T ss_pred             cceEEEEcCCceEEEeccc--chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHh-hcCceeEE
Confidence            4556678999999999864  45566788999999999999999999999999999999853 43333332 22334556


Q ss_pred             EeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCC
Q psy13076         96 LGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG  175 (423)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  175 (423)
                      +++.|+...++++.+.-+.+..+.-..-.-....|.+-|.++.|+|...+++||++|...++||... ..+..  ...+.
T Consensus       151 ~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~--S~~~e  227 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFT--SAAEE  227 (737)
T ss_pred             EEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-ccccc--CChhc
Confidence            8899999999999999888887764443444578999999999999999999999999999999743 32222  23345


Q ss_pred             CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV  246 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~  246 (423)
                      .+|++++|+|+ +.+++.+..-              ++.-+.....|..++|++++.. ++.|...|.+.+
T Consensus       228 y~ITSva~npd-~~~~v~S~nt--------------~R~~~p~~GSifnlsWS~DGTQ-~a~gt~~G~v~~  282 (737)
T KOG1524|consen  228 YAITSVAFNPE-KDYLLWSYNT--------------ARFSSPRVGSIFNLSWSADGTQ-ATCGTSTGQLIV  282 (737)
T ss_pred             cceeeeeeccc-cceeeeeeee--------------eeecCCCccceEEEEEcCCCce-eeccccCceEEE
Confidence            78999999999 4444432211              1112344567889999999975 666666666543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=2.6e-15  Score=137.88  Aligned_cols=269  Identities=10%  Similarity=0.128  Sum_probs=167.6

Q ss_pred             EEccCCcEEEEEcCC-CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc--CCCcceeE
Q psy13076        148 SGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS--GQSKPINS  224 (423)
Q Consensus       148 s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~  224 (423)
                      +...++.|++||+.+ ++......+. ..+....++++|+++++++++.... ....|..+....+....  ........
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~-~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEF-RVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCC-cEEEEEECCCCceEEeeeecCCCCceE
Confidence            346689999999964 2222222222 2345678999999999887765433 23344443211121111  12234568


Q ss_pred             EEEecCCCeeEEEEeCCCeEEEEcCCCce----eeeeccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceec
Q psy13076        225 CDFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSE  299 (423)
Q Consensus       225 ~~~~~~~~~~~~s~s~d~~i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~  299 (423)
                      +.++|++.+++++...++.+.+|+.....    ..... .+......++++|+|+++++++ .++.|.+||..+...+..
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            99999999866666668999999764211    11111 1223356688999999886655 569999999976332211


Q ss_pred             -----ccccccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecCC--cc--eeeeeeeC-c----eeEeeEEEEEecCcEE
Q psy13076        300 -----LGNPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIET--KS--AVSEFLMG-N----QVEDQQVSCLWQGDYL  364 (423)
Q Consensus       300 -----~~~~~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~--~~--~i~~~~~~-~----~~~~~~~~~~~~g~~l  364 (423)
                           .... .......++|+|+|++|+++.. +++|.+|++..  ++  .+.+.... .    +.....+.+.++|+++
T Consensus       164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l  242 (330)
T PRK11028        164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL  242 (330)
T ss_pred             cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence                 1111 1234678999999999977765 89999999973  22  22222111 0    1111235566899998


Q ss_pred             EEEe-CCCcEEEEecCCCCCceEEeccCC---CceeEEEecCCCCeEEEecC-CCcEEEeeC
Q psy13076        365 LTVS-LSGFISYLDVNNPSTPIRVIKGHN---KPITALALSPDRGTVFTGSH-DGFITRWNA  421 (423)
Q Consensus       365 ~~~~-~~~~i~~~~~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~l~s~s~-D~~i~~W~~  421 (423)
                      .++. .++.|.+|++....... .+.+|.   ...+.++|+||+++|+++.. +++|.+|++
T Consensus       243 yv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        243 YACDRTASLISVFSVSEDGSVL-SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             EEecCCCCeEEEEEEeCCCCeE-EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            8875 46789999986543322 222221   24568999999999987664 899999975

>KOG1240|consensus

Probab=99.77  E-value=1.1e-16  Score=155.95  Aligned_cols=311  Identities=17%  Similarity=0.206  Sum_probs=198.8

Q ss_pred             CCceeecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEE
Q psy13076         37 STPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVII  115 (423)
Q Consensus        37 ~~~~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  115 (423)
                      +..+..+..|...|..++.+++. .+++|||.||+||+||...-..      .    ...+                   
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~------~----~~s~------------------- 1088 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG------E----GGSA------------------- 1088 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhc------C----ccee-------------------
Confidence            45677788999999999998865 9999999999999999864110      0    0000                   


Q ss_pred             EecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076        116 RNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE  195 (423)
Q Consensus       116 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~  195 (423)
                            +...++....+.+..+..-+.+..+|.++.||.|++.++.-.+..   .....-..+....  .+|.  ++   
T Consensus      1089 ------rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~---~~~~~~~ri~n~~--~~g~--vv--- 1152 (1431)
T KOG1240|consen 1089 ------RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVS---KRVATQVRIPNLK--KDGV--VV--- 1152 (1431)
T ss_pred             ------eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccc---cceeeeeeccccc--CCCc--eE---
Confidence                  000111112346777777888999999999999999987532100   0000000000000  0111  00   


Q ss_pred             CCceeeEEEeecCCcceecccCCCcceeEEEEec-CCCeeEEEEeCCCeEEEEcCCCceeeee--ccccccCeEEEEECC
Q psy13076        196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKP-SRPFRIITGSEDNTIAVFEGPPFKFKMT--KQEHSRFVQAVRYSP  272 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~s~s~d~~i~~~~~~~~~~~~~--~~~~~~~i~~l~~s~  272 (423)
                                                 ..-+|.. .+...++.+...+.|..||.+.......  .....+.|++++.+|
T Consensus      1153 ---------------------------~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1153 ---------------------------SMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP 1205 (1431)
T ss_pred             ---------------------------EeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC
Confidence                                       0000000 1112466677788899998764433222  233446799999999


Q ss_pred             CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC---CeEEEEe--CCCcEEEEecCCcceeeeeeeC
Q psy13076        273 SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG---TQLLTAS--GDKTCKLWDIETKSAVSEFLMG  347 (423)
Q Consensus       273 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~---~~l~s~s--~d~~i~iwd~~~~~~i~~~~~~  347 (423)
                      .+..++.|+..|.+.+||++-+..+.....+++ ..+..+..+|-.   ...++++  ..+.|.+|++.++.+-..+..+
T Consensus      1206 ~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred             CceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence            999999999999999999998888877766544 678888887743   4555544  4778999999998766555444


Q ss_pred             ce---------eE--------eeEEEEEe-cCcEEEEEeCCCcEEEEecCCCCCc-------------------------
Q psy13076        348 NQ---------VE--------DQQVSCLW-QGDYLLTVSLSGFISYLDVNNPSTP-------------------------  384 (423)
Q Consensus       348 ~~---------~~--------~~~~~~~~-~g~~l~~~~~~~~i~~~~~~~~~~~-------------------------  384 (423)
                      ..         ..        ....++.. .+.++++|+.|+.|+.||...+...                         
T Consensus      1285 ~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~ 1364 (1431)
T KOG1240|consen 1285 DGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPG 1364 (1431)
T ss_pred             CCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCC
Confidence            11         00        00111112 3567789999999999997642111                         


Q ss_pred             ----------------------eEE--------eccCCCceeEEEecCC-CCeEEEecCCCcEEEee
Q psy13076        385 ----------------------IRV--------IKGHNKPITALALSPD-RGTVFTGSHDGFITRWN  420 (423)
Q Consensus       385 ----------------------~~~--------~~~h~~~v~~i~~sp~-~~~l~s~s~D~~i~~W~  420 (423)
                                            ...        -..|..+|+++++... ..+|++++.||.|++|.
T Consensus      1365 ~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1365 SQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             CccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                                  000        1248889999998754 45789999999999994

>KOG1334|consensus

Probab=99.77  E-value=1.3e-17  Score=147.68  Aligned_cols=294  Identities=16%  Similarity=0.253  Sum_probs=200.5

Q ss_pred             eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC
Q psy13076         41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN  120 (423)
Q Consensus        41 ~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  120 (423)
                      +.|..|.+-|+.|.|+..|..|+|||.|..|.+||+.++.....+                                   
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f-----------------------------------  180 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF-----------------------------------  180 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc-----------------------------------
Confidence            457899999999999999999999999999999999876543322                                   


Q ss_pred             CcccccccCCcceEEEEEECC--CCCEEEEEccCCcEEEEEcCCCc-eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        121 PAISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                            ..||...|....|-|  +.+-+++++.||.+|+=.+.... +........+.++|.-++.-|+..+-+..+...
T Consensus       181 ------~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD  254 (559)
T KOG1334|consen  181 ------ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGED  254 (559)
T ss_pred             ------ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccc
Confidence                  246777777778888  45789999999999997765433 333445566788999999999876555444333


Q ss_pred             ceeeEEEeecCCcc---eecccCCCc---ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee------------eecc
Q psy13076        198 ERFGHVFMSETGTS---VGEISGQSK---PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK------------MTKQ  259 (423)
Q Consensus       198 ~~~~~~~~~~~~~~---~~~~~~~~~---~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~------------~~~~  259 (423)
                      ....++- ...+..   +..-..+..   ....++..|...+.+++++.|...++||.+.....            ....
T Consensus       255 ~~v~~~D-lr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~  333 (559)
T KOG1334|consen  255 AVVFHID-LRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE  333 (559)
T ss_pred             cceeeee-eccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc
Confidence            3333322 211111   111111222   45678889999888999999999999987543211            0111


Q ss_pred             ccccCeEEEEECCCCCEEEEEEecCeEEEEECCC--c----------cceecccccccC--CCeEEEEE-CCCCCeEEEE
Q psy13076        260 EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS--A----------DLVSELGNPAHK--GGVYAVAW-KPDGTQLLTA  324 (423)
Q Consensus       260 ~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~--~----------~~~~~~~~~~~~--~~i~~l~~-~~~~~~l~s~  324 (423)
                      .....|++++|+.++.-|.++-.|-.|++|...-  |          ...+. ..++|.  ..|.++-| -|...|+++|
T Consensus       334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~-vYKGHrN~~TVKgVNFfGPrsEyVvSG  412 (559)
T KOG1334|consen  334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKR-VYKGHRNSRTVKGVNFFGPRSEYVVSG  412 (559)
T ss_pred             cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccch-hhcccccccccceeeeccCccceEEec
Confidence            3345689999998777666666677899995321  2          11111 012342  33666654 5677788888


Q ss_pred             eCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC
Q psy13076        325 SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR  404 (423)
Q Consensus       325 s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~  404 (423)
                      |+-|.|.||+-++++.+.-                                            +.|-..-|+|+.=+|.-
T Consensus       413 SDCGhIFiW~K~t~eii~~--------------------------------------------MegDr~VVNCLEpHP~~  448 (559)
T KOG1334|consen  413 SDCGHIFIWDKKTGEIIRF--------------------------------------------MEGDRHVVNCLEPHPHL  448 (559)
T ss_pred             CccceEEEEecchhHHHHH--------------------------------------------hhcccceEeccCCCCCC
Confidence            8778888887666654432                                            23333368999999999


Q ss_pred             CeEEEecCCCcEEEeeC
Q psy13076        405 GTVFTGSHDGFITRWNA  421 (423)
Q Consensus       405 ~~l~s~s~D~~i~~W~~  421 (423)
                      ..|||.|-|.-|+||.+
T Consensus       449 PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  449 PVLASSGIDHDVKIWTP  465 (559)
T ss_pred             chhhccCCccceeeecC
Confidence            99999999999999986

>KOG0303|consensus

Probab=99.76  E-value=1.3e-16  Score=137.72  Aligned_cols=234  Identities=20%  Similarity=0.339  Sum_probs=167.4

Q ss_pred             ccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076        125 DIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV  203 (423)
Q Consensus       125 ~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~  203 (423)
                      ..+.||+.+|..++|.| +...+||||.|.+|.||++.+.....     .+.                            
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-----~lt----------------------------  121 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-----DLT----------------------------  121 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-----Ccc----------------------------
Confidence            34579999999999999 77889999999999999986532211     011                            


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD  283 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d  283 (423)
                            ..+..+.+|.+.+..+.|+|.-...|++++.|+++.+|+..+.....++. |.+.|.++.|+.||.+|++++.|
T Consensus       122 ------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD  194 (472)
T KOG0303|consen  122 ------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD  194 (472)
T ss_pred             ------cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc
Confidence                  12234567888899999999888889999999999999988777666666 99999999999999999999999


Q ss_pred             CeEEEEECCCccceecccccccCCC-eEEEEECCCCCeEEEE---eCCCcEEEEecCCcce---eeeeeeCceeEeeEEE
Q psy13076        284 GKVFLYDGASADLVSELGNPAHKGG-VYAVAWKPDGTQLLTA---SGDKTCKLWDIETKSA---VSEFLMGNQVEDQQVS  356 (423)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~-i~~l~~~~~~~~l~s~---s~d~~i~iwd~~~~~~---i~~~~~~~~~~~~~~~  356 (423)
                      +.|+|||.++++.+.+-  .+|.+. -..+.|-.+|..+-||   ..++.+-+||....+.   ..++..+.   .. +.
T Consensus       195 KkvRv~dpr~~~~v~e~--~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn---Gv-l~  268 (472)
T KOG0303|consen  195 KKVRVIDPRRGTVVSEG--VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN---GV-LL  268 (472)
T ss_pred             ceeEEEcCCCCcEeeec--ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCC---ce-EE
Confidence            99999999999988765  346543 3456688888855444   3467899998765432   22222111   11 11


Q ss_pred             EEec-CcE--EEEEeCCCcEEEEecCCCCCceEEec--cCCCceeEEEecCCC
Q psy13076        357 CLWQ-GDY--LLTVSLSGFISYLDVNNPSTPIRVIK--GHNKPITALALSPDR  404 (423)
Q Consensus       357 ~~~~-g~~--l~~~~~~~~i~~~~~~~~~~~~~~~~--~h~~~v~~i~~sp~~  404 (423)
                      ..+| +..  .++|=.|+.|++|.+++...-++-+.  .-..+=+.+.|.|.-
T Consensus       269 PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  269 PFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR  321 (472)
T ss_pred             eeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence            2222 222  35777899999999987543333332  223455667777653

>KOG0290|consensus

Probab=99.76  E-value=1.6e-16  Score=132.02  Aligned_cols=204  Identities=15%  Similarity=0.293  Sum_probs=147.6

Q ss_pred             cCCCcceeEEEEecCC----CeeEEEEeCCCeEEEEcCCC--cee--e-----eeccccccCeEEEEECCC-CCEEEEEE
Q psy13076        216 SGQSKPINSCDFKPSR----PFRIITGSEDNTIAVFEGPP--FKF--K-----MTKQEHSRFVQAVRYSPS-GSHFASAG  281 (423)
Q Consensus       216 ~~~~~~i~~~~~~~~~----~~~~~s~s~d~~i~~~~~~~--~~~--~-----~~~~~~~~~i~~l~~s~~-g~~l~s~s  281 (423)
                      ..|.-+++.+-|.|+.    +-++|++  +..+++|....  .+.  .     .....+..++++..|+.- -+++.+.|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            3567788899999875    2334444  56899997542  111  1     112345567899999874 45889999


Q ss_pred             ecCeEEEEECCCccc--eecccccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEE
Q psy13076        282 FDGKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL  358 (423)
Q Consensus       282 ~dg~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~  358 (423)
                      -|-++.|||+.++..  +++. .-+|...|.+++|...+ +.|++.|.||.+|+||++..+.-.-.....+.....+...
T Consensus       171 iDTTCTiWdie~~~~~~vkTQ-LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs  249 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQ-LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS  249 (364)
T ss_pred             ccCeEEEEEEeeccccceeeE-EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence            999999999988632  2222 13799999999999865 5789999999999999998764222211111122222333


Q ss_pred             e---cCcEEEEEeC-CCcEEEEecCCCCCceEEeccCCCceeEEEecCCCC-eEEEecCCCcEEEeeCC
Q psy13076        359 W---QGDYLLTVSL-SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAK  422 (423)
Q Consensus       359 ~---~g~~l~~~~~-~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~-~l~s~s~D~~i~~W~~~  422 (423)
                      |   +-.++++-.. +..|.+.|++.+..++..+++|.+.|+.|+|.|..+ .|.|+|.|+.+-+||+.
T Consensus       250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence            3   3456666554 457999999999999999999999999999999754 68999999999999985

>KOG0771|consensus

Probab=99.76  E-value=1.8e-17  Score=144.50  Aligned_cols=196  Identities=18%  Similarity=0.181  Sum_probs=152.3

Q ss_pred             eEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc
Q psy13076        223 NSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN  302 (423)
Q Consensus       223 ~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~  302 (423)
                      ..++|++++.. +++++.||++++|+.|..........|...|..+.|+|||++|++.+.| ..+||+..++..+.....
T Consensus       148 k~vaf~~~gs~-latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSK-LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCE-eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            67888888764 9999999999999988877777778888999999999999999999999 999999999866655542


Q ss_pred             cccCCCeEEEEECCCC-----CeEEEEeCCCcEEEEecCCccee---eeee-eCceeEeeEEEEEecCcEEEEEeCCCcE
Q psy13076        303 PAHKGGVYAVAWKPDG-----TQLLTASGDKTCKLWDIETKSAV---SEFL-MGNQVEDQQVSCLWQGDYLLTVSLSGFI  373 (423)
Q Consensus       303 ~~~~~~i~~l~~~~~~-----~~l~s~s~d~~i~iwd~~~~~~i---~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~i  373 (423)
                      ..-......+.|+.++     ..++....-+.|+.||+.....-   +... ........++.++.+|++++.|+.+|.+
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence            1222335567788777     33344455667888776543321   1000 0111234567788899999999999999


Q ss_pred             EEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        374 SYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       374 ~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      -+++....+...+..+.|...|+.+.|+||.+++++.+.|.++.+-.
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence            99999998887778899999999999999999999999998877654

>KOG0322|consensus

Probab=99.75  E-value=1.1e-16  Score=131.31  Aligned_cols=279  Identities=20%  Similarity=0.272  Sum_probs=173.7

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecc-cccCceeEEEEeCCCCeEEEecCCCceEEeecCCccee--ecccCCCCC
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIF--ATLPRTQRG   91 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~--~~~~~~~~~   91 (423)
                      .+++|.++...|.+.+|++.+.+ +...++ .|+..|+.+..-|+ +.|.+-+.|+++.+|+..-....  +++..+.-+
T Consensus        24 a~~rL~sg~~~G~V~~w~lqt~r-~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslg  101 (323)
T KOG0322|consen   24 ANERLMSGLSVGIVKMWVLQTER-DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLG  101 (323)
T ss_pred             cchhhhcccccceEEEEEeecCc-cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccc
Confidence            37779999999999999997644 455788 47889999999997 55779999999999998753221  111110000


Q ss_pred             CceEEeeCCC----CCeEEEecCCeEEEEecCCCcccc------cccCCcceEEEEEECC-CCC--EEEEEccCCcEEEE
Q psy13076         92 QPIVLGGDPK----GKNFLYTNGNSVIIRNIENPAISD------IYTEHSCAVNVAKYSP-SGF--YIASGDISGKVRIW  158 (423)
Q Consensus        92 ~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~------~~~~h~~~i~~~~~sp-~~~--~l~s~~~d~~i~vw  158 (423)
                       .+-++..+.    .+.+.+.++..-.....+.++-..      .-.+-.+.+++..+.. .+.  +++.|-++|.+.+|
T Consensus       102 -FCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~w  180 (323)
T KOG0322|consen  102 -FCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIW  180 (323)
T ss_pred             -cccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEE
Confidence             011111111    122233221110011111111110      1112335566665432 232  44567778999999


Q ss_pred             EcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEE
Q psy13076        159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG  238 (423)
Q Consensus       159 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~  238 (423)
                      |+.++.....  +....                                  +.......|..++.+++|.+..+. =+++
T Consensus       181 d~S~~~~~~~--~~~~~----------------------------------kv~~~~ash~qpvlsldyas~~~r-Gisg  223 (323)
T KOG0322|consen  181 DLSTGDKIIQ--LPQSS----------------------------------KVESPNASHKQPVLSLDYASSCDR-GISG  223 (323)
T ss_pred             EccCCceeec--ccccc----------------------------------ccccchhhccCcceeeeechhhcC-CcCC
Confidence            9977643321  11100                                  001122345567777777765443 3456


Q ss_pred             eCCCeEEEEcCCCc----eeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEE
Q psy13076        239 SEDNTIAVFEGPPF----KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW  314 (423)
Q Consensus       239 s~d~~i~~~~~~~~----~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~  314 (423)
                      +.+..+.+|.....    .......-....+..+..-||++.+|+++.|+.|+||..++...+..+.  -|.+.|.+++|
T Consensus       224 ga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk--yHsagvn~vAf  301 (323)
T KOG0322|consen  224 GADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK--YHSAGVNAVAF  301 (323)
T ss_pred             CccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh--hhhcceeEEEe
Confidence            66666777754321    1111222223447778899999999999999999999999999888875  48899999999


Q ss_pred             CCCCCeEEEEeCCCcEEEEec
Q psy13076        315 KPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       315 ~~~~~~l~s~s~d~~i~iwd~  335 (423)
                      +|+...++++|.|.+|-+|++
T Consensus       302 spd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  302 SPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCCCchhhhccCCceEEeeec
Confidence            999999999999999999986

>KOG1007|consensus

Probab=99.74  E-value=2.9e-16  Score=130.34  Aligned_cols=278  Identities=17%  Similarity=0.270  Sum_probs=180.4

Q ss_pred             cccccCCcceEEEEEECC-CCCEEEEEccC-------CcEEEEEcCCCcee-EE------eeec-CCCCCeeEEEECCCC
Q psy13076        124 SDIYTEHSCAVNVAKYSP-SGFYIASGDIS-------GKVRIWDTVNKEHI-LK------NEFH-PIGGPIKDIAWSPDN  187 (423)
Q Consensus       124 ~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d-------~~i~vwd~~~~~~~-~~------~~~~-~~~~~v~~v~~s~~~  187 (423)
                      .++|.-|.++|+.++-+| +.++|+|+-.+       -.+-||.+.+.... ..      ..+. ..-+.+.++-|.|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            356777889999999999 55566665442       24788998653221 00      0011 112578999999999


Q ss_pred             CeEEEEEcCCceeeEEEeecCCcc-eeccc-----CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee-ccc
Q psy13076        188 QRMVVVGEGRERFGHVFMSETGTS-VGEIS-----GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT-KQE  260 (423)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~-~~~  260 (423)
                      ..+++....   ...+|..+.+.. ..++.     .+....++-+|+|-.+..-+....|+++..||.++.+.... -.+
T Consensus       136 ~klasm~dn---~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  136 DKLASMDDN---NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             CeeEEeccC---ceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhh
Confidence            998887633   234555555544 33332     23445677788883322234456789999999887654333 346


Q ss_pred             cccCeEEEEECCCCC-EEEEEEecCeEEEEECCCcc-ceecccccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecCC
Q psy13076        261 HSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASAD-LVSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       261 ~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~~  337 (423)
                      |...+..+.|+|+-+ +|++++.||.|++||.+..+ .+.++  +.|..+++++.|+|.- ++++++|.|..|.+|...+
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el--~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL--PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc--CCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            778899999999977 58999999999999998655 34455  5799999999999954 6888999999999998754


Q ss_pred             cceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeE-EEecCCCcE
Q psy13076        338 KSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV-FTGSHDGFI  416 (423)
Q Consensus       338 ~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l-~s~s~D~~i  416 (423)
                      -..-.............      ++     ..-..++  -++  ...+..+..|++.|.+++||.-+.++ ||-|.||++
T Consensus       291 vSSE~qi~~~~dese~e------~~-----dseer~k--pL~--dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv  355 (370)
T KOG1007|consen  291 VSSEQQIEFEDDESESE------DE-----DSEERVK--PLQ--DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV  355 (370)
T ss_pred             cccccccccccccccCc------ch-----hhHHhcc--ccc--ccccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence            32111110000000000      00     0000000  111  22345677899999999999988875 678999999


Q ss_pred             EEeeC
Q psy13076        417 TRWNA  421 (423)
Q Consensus       417 ~~W~~  421 (423)
                      .|=.+
T Consensus       356 iIs~V  360 (370)
T KOG1007|consen  356 IISSV  360 (370)
T ss_pred             EeecC
Confidence            87544

>KOG1007|consensus

Probab=99.73  E-value=1.3e-15  Score=126.50  Aligned_cols=265  Identities=19%  Similarity=0.290  Sum_probs=195.7

Q ss_pred             ccceEEEEeccCCCCc--eeecccccCceeEEEEeCCC-CeEEEecCC-------CceEEeecCC---------cceeec
Q psy13076         24 LSGFISYLDVNNPSTP--IRVIKGHNKPITALALSPDR-GTVFTGSHD-------GFITRWNAKT---------EYIFAT   84 (423)
Q Consensus        24 ~dg~i~~~d~~~~~~~--~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D-------~~i~vW~~~~---------~~~~~~   84 (423)
                      .|..|++++++.+...  ..+|.-|-++|..++-+|-. ++|+|+-.|       -.+-||.+.-         -+++..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            4578888887654443  34678889999999999955 456665432       2367897642         123444


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc-cccc-----cCCcceEEEEEECC--CCCEEEEEccCCcEE
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI-SDIY-----TEHSCAVNVAKYSP--SGFYIASGDISGKVR  156 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~-----~~h~~~i~~~~~sp--~~~~l~s~~~d~~i~  156 (423)
                      +.....++.-.+.+.|++..+++..++.+.+|+++++.- ...+     .+|....++-+|+|  +|..+++.+ |++++
T Consensus       118 Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~  196 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQ  196 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEE
Confidence            444555666778899999999999999999999976543 2222     24677788999999  788888774 79999


Q ss_pred             EEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec-CCcceecccCCCcceeEEEEecCCCeeE
Q psy13076        157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE-TGTSVGEISGQSKPINSCDFKPSRPFRI  235 (423)
Q Consensus       157 vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~  235 (423)
                      .||+++.++.+... ..++..|+++.|+|+.+++++.+++ +.+.++|+.. +...+.++.+|...+.++.|+|....++
T Consensus       197 ~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gD-dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi  274 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGD-DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI  274 (370)
T ss_pred             EEEccchhhhcchh-hhhcceeeeccCCCCceEEEEEcCC-CccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence            99998766544332 3456779999999998887776544 4566788765 4567889999999999999999988889


Q ss_pred             EEEeCCCeEEEEcCCC-----------------------------ceeeeeccccccCeEEEEECCCCC-EEEEEEecCe
Q psy13076        236 ITGSEDNTIAVFEGPP-----------------------------FKFKMTKQEHSRFVQAVRYSPSGS-HFASAGFDGK  285 (423)
Q Consensus       236 ~s~s~d~~i~~~~~~~-----------------------------~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~  285 (423)
                      ++++.|..+.++-...                             .....++..|.+.|.+++||.-.. .||+-|+||.
T Consensus       275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR  354 (370)
T KOG1007|consen  275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR  354 (370)
T ss_pred             EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence            9999999998873110                             001225667889999999998777 5788999999


Q ss_pred             EEEEEC
Q psy13076        286 VFLYDG  291 (423)
Q Consensus       286 i~vwd~  291 (423)
                      +.|=..
T Consensus       355 viIs~V  360 (370)
T KOG1007|consen  355 VIISSV  360 (370)
T ss_pred             EEeecC
Confidence            887543

>KOG2110|consensus

Probab=99.73  E-value=9e-15  Score=125.65  Aligned_cols=179  Identities=19%  Similarity=0.299  Sum_probs=135.5

Q ss_pred             CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCC-CcceeEEEEecCC
Q psy13076        153 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ-SKPINSCDFKPSR  231 (423)
Q Consensus       153 ~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~  231 (423)
                      +.+++.+.+++..++...+.   .+|.+|.++.+  .|+++-.+.   ..+++...-+.+..+... ..+--.++++|+.
T Consensus        68 r~Lkv~~~Kk~~~ICe~~fp---t~IL~VrmNr~--RLvV~Lee~---IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~  139 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIFFP---TSILAVRMNRK--RLVVCLEES---IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN  139 (391)
T ss_pred             ceEEEEEcccCceEEEEecC---CceEEEEEccc--eEEEEEccc---EEEEecccceeehhhhccCCCccceEeeccCC
Confidence            56999999888777766654   57888888765  344443222   356666666666666543 3333355555543


Q ss_pred             --CeeEEEEe-CCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCe-EEEEECCCccceecccccccCC
Q psy13076        232 --PFRIITGS-EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK-VFLYDGASADLVSELGNPAHKG  307 (423)
Q Consensus       232 --~~~~~s~s-~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~  307 (423)
                        .+..+-++ ..|.+.+||....+.......|+..+.+++|+|+|.+||++|..|+ ||||...+|+.+.++.......
T Consensus       140 ~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~  219 (391)
T KOG2110|consen  140 ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPV  219 (391)
T ss_pred             CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceee
Confidence              35444444 3578999998888877788899999999999999999999999997 6899999999998887544445


Q ss_pred             CeEEEEECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076        308 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       308 ~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      .|.+++|+|++++|.+.|.-++|++|.+....
T Consensus       220 ~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  220 SIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            68899999999999999999999999987543

>KOG2110|consensus

Probab=99.73  E-value=7.4e-15  Score=126.16  Aligned_cols=236  Identities=21%  Similarity=0.290  Sum_probs=159.5

Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS  211 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      ..++...|..+...+..|+.|| .++++.+..+.....  ......|-.+.|+.  ..+++++..+.+..++.....+..
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~--~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSK--DTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcc--cCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence            3566677888888888888887 677776543321111  11123455666765  456666666665555555554555


Q ss_pred             eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccc---ccCeEEEEECCCCCEEEEEE--ecCeE
Q psy13076        212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH---SRFVQAVRYSPSGSHFASAG--FDGKV  286 (423)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~---~~~i~~l~~s~~g~~l~s~s--~dg~i  286 (423)
                      +.++.- ..+|.++.++.+   +++++-.+. |++||.+.+++..+....   ...+.++.+++.+.|+|.-+  ..|.|
T Consensus        81 ICe~~f-pt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   81 ICEIFF-PTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             EEEEec-CCceEEEEEccc---eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence            554432 346777777765   366665544 999999998887766544   33455666666667887643  36899


Q ss_pred             EEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCc-EEEEecCCcceeeeeeeCc-eeEeeEEEEEecCcEE
Q psy13076        287 FLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT-CKLWDIETKSAVSEFLMGN-QVEDQQVSCLWQGDYL  364 (423)
Q Consensus       287 ~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~-i~iwd~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~l  364 (423)
                      .+||..+-+....+.  +|++.+.+++|+|+|.+|||+|..|+ ||+|.+.+++.+.+|..+. .....++++.+++++|
T Consensus       156 ~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  156 VLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             EEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence            999999888777774  79999999999999999999999997 8999999999988886553 2333444455555555


Q ss_pred             EEEeCCCcEEEEecC
Q psy13076        365 LTVSLSGFISYLDVN  379 (423)
Q Consensus       365 ~~~~~~~~i~~~~~~  379 (423)
                      .+.+..++|.++.+.
T Consensus       234 ~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  234 AASSNTETVHIFKLE  248 (391)
T ss_pred             EEecCCCeEEEEEec
Confidence            555555555555443

>KOG0649|consensus

Probab=99.73  E-value=4.7e-15  Score=120.37  Aligned_cols=227  Identities=20%  Similarity=0.244  Sum_probs=147.2

Q ss_pred             EEEEeCCEEEEEeccceEEEEeccC---------CCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCc--
Q psy13076         11 SCLWQGDYLLTVSLSGFISYLDVNN---------PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTE--   79 (423)
Q Consensus        11 ~~~~~~~~~~~~~~dg~i~~~d~~~---------~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~--   79 (423)
                      |+.+-++|+++|+.+|.|.++.++.         +..++..+++|++||..++|.  +++|++|+. |.|+-|...-.  
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~e   93 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEE   93 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhh
Confidence            5667899999999999999998742         223455568999999999998  567888865 99999975421  


Q ss_pred             -----ceeecccCCCC----C-CceEEeeCCCCC-eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEE
Q psy13076         80 -----YIFATLPRTQR----G-QPIVLGGDPKGK-NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS  148 (423)
Q Consensus        80 -----~~~~~~~~~~~----~-~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s  148 (423)
                           ++.....+.+.    . ..-++..+|..+ .+....+..+..|++++++...+|+||++-|+++.-......++|
T Consensus        94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qils  173 (325)
T KOG0649|consen   94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILS  173 (325)
T ss_pred             hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceee
Confidence                 11111111111    1 112355566544 444445567788999999999999999999999988565567899


Q ss_pred             EccCCcEEEEEcCCCceeEEeeecCCC--------CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCc
Q psy13076        149 GDISGKVRIWDTVNKEHILKNEFHPIG--------GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK  220 (423)
Q Consensus       149 ~~~d~~i~vwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (423)
                      |++||++|+||.++.++....+....+        .-|.+++  -+..++++.+...   ..+|.....++...++ -..
T Consensus       174 G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~---lslwhLrsse~t~vfp-ipa  247 (325)
T KOG0649|consen  174 GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPK---LSLWHLRSSESTCVFP-IPA  247 (325)
T ss_pred             cCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCc---eeEEeccCCCceEEEe-ccc
Confidence            999999999999998876554432211        1233333  3344555443322   3345444444333322 223


Q ss_pred             ceeEEEEecCCCeeEEEEeCCCeEEEEcC
Q psy13076        221 PINSCDFKPSRPFRIITGSEDNTIAVFEG  249 (423)
Q Consensus       221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~  249 (423)
                      ++..+.|..+.   +++++..+.+.-|..
T Consensus       248 ~v~~v~F~~d~---vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  248 RVHLVDFVDDC---VLIGGEGNHVQSYTL  273 (325)
T ss_pred             ceeEeeeecce---EEEeccccceeeeee
Confidence            45666676553   666776667776653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=9e-16  Score=145.34  Aligned_cols=211  Identities=14%  Similarity=0.159  Sum_probs=142.1

Q ss_pred             CeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC---CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCC
Q psy13076        111 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN  187 (423)
Q Consensus       111 ~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  187 (423)
                      ..+.+|+.+... ...+..|...+...+|+|||++++..+.+   ..|.+||+.+++......+   .+....++|+|||
T Consensus       184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~---~g~~~~~~wSPDG  259 (429)
T PRK01742        184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF---RGHNGAPAFSPDG  259 (429)
T ss_pred             EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC---CCccCceeECCCC
Confidence            467788876544 45567788889999999999999987654   4699999987653322222   2334578999999


Q ss_pred             CeEEEEEcCCceeeEEEeec-CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC--CceeeeeccccccC
Q psy13076        188 QRMVVVGEGRERFGHVFMSE-TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP--PFKFKMTKQEHSRF  264 (423)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~--~~~~~~~~~~~~~~  264 (423)
                      +.+++.....+. ..+|..+ .+.....+..+...+....|+|++..++.++..++...+|...  .......  .+.. 
T Consensus       260 ~~La~~~~~~g~-~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~-  335 (429)
T PRK01742        260 SRLAFASSKDGV-LNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG-  335 (429)
T ss_pred             CEEEEEEecCCc-EEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC-
Confidence            998887643332 2344333 2233445555666678899999998766666677877777642  2211111  2222 


Q ss_pred             eEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076        265 VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       265 i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~  335 (423)
                       ..++|+|||++++.++.++ +.+||+.+++... +.. .+  ....++|+|+|++|+.++.++..++|++
T Consensus       336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~-~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSS-TF--LDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecC-CC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence             3468999999998887765 5669988776432 221 11  2356789999999999999988887765

>KOG4497|consensus

Probab=99.72  E-value=2.3e-15  Score=127.27  Aligned_cols=309  Identities=17%  Similarity=0.232  Sum_probs=192.8

Q ss_pred             EEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCe-EEEecCCCceEEeecCCcceeecccCCC
Q psy13076         11 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT-VFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        11 ~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~-l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      .++++|+|+|++++- .+-+-|..+ -+..+.|.- -+.|.-+.|..|.-+ |-....|+.|.+|++..-+-...+... 
T Consensus        15 ~fSp~g~yiAs~~~y-rlviRd~~t-lq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg-   90 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRY-RLVIRDSET-LQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG-   90 (447)
T ss_pred             eECCCCCeeeeeeee-EEEEeccch-hhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC-
Confidence            355799999998876 555666543 222222222 467788899988754 556678999999999875544433322 


Q ss_pred             CCCceEEeeCCCCCeEEEecCC--eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc-ee
Q psy13076         90 RGQPIVLGGDPKGKNFLYTNGN--SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-HI  166 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~-~~  166 (423)
                      ......+.++|+|+.++..++.  .+.+|.+.+.+.... .-.+..+..++|+|||++.+.++.-.-....++...+ -.
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~  169 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI  169 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence            2234467899999888776654  677899877655332 2223456889999999999988754222122211110 01


Q ss_pred             EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076        167 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV  246 (423)
Q Consensus       167 ~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~  246 (423)
                      +...+....-..+.+.|+|||..+++...--+..  ++..+.+          -.+..+.|+|.+.+ ++.|+.|+.+++
T Consensus       170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk--v~aYe~~----------lG~k~v~wsP~~qf-lavGsyD~~lrv  236 (447)
T KOG4497|consen  170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK--VYAYERG----------LGLKFVEWSPCNQF-LAVGSYDQMLRV  236 (447)
T ss_pred             HHHhcCCCcccccCceECCCCcEEEEecchhhhe--eeeeeec----------cceeEEEeccccce-EEeeccchhhhh
Confidence            1112222223356788999999988754322111  1111111          24667888998776 888999988776


Q ss_pred             EcC-----------------CC--------ce--------eee---------------------------ec------cc
Q psy13076        247 FEG-----------------PP--------FK--------FKM---------------------------TK------QE  260 (423)
Q Consensus       247 ~~~-----------------~~--------~~--------~~~---------------------------~~------~~  260 (423)
                      .+-                 +.        ++        +..                           .+      ..
T Consensus       237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn  316 (447)
T KOG4497|consen  237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN  316 (447)
T ss_pred             hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCC
Confidence            320                 00        00        000                           00      01


Q ss_pred             cccCeEEEEECCCCCEEEEEEe--cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        261 HSRFVQAVRYSPSGSHFASAGF--DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       261 ~~~~i~~l~~s~~g~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      ....+.-++|++|..|+++-..  -+.+.+||++.-++...+.   ....|....|+|....|+.+.....+.+|.....
T Consensus       317 Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  317 PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence            1223567999999999988654  3568999998877665553   3567999999999988888877777888887654


Q ss_pred             ce
Q psy13076        339 SA  340 (423)
Q Consensus       339 ~~  340 (423)
                      .+
T Consensus       394 ~~  395 (447)
T KOG4497|consen  394 RV  395 (447)
T ss_pred             eE
Confidence            33

>KOG1587|consensus

Probab=99.70  E-value=1e-14  Score=137.78  Aligned_cols=265  Identities=19%  Similarity=0.272  Sum_probs=181.9

Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCcee----EEeeecCCCCCeeEEEECCC
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHI----LKNEFHPIGGPIKDIAWSPD  186 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~v~~v~~s~~  186 (423)
                      .+.+|+++++......-.-...|+++.|+| +..++|.|..+|+|-+||+......    .....+.+..++..+.|-.+
T Consensus       223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~  302 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN  302 (555)
T ss_pred             eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence            578999988722222223457899999999 6788899999999999999865431    23344567789999999875


Q ss_pred             CCe--EEEEEcCCceeeEEEeecCCc------ceeccc------CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc
Q psy13076        187 NQR--MVVVGEGRERFGHVFMSETGT------SVGEIS------GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF  252 (423)
Q Consensus       187 ~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~------~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~  252 (423)
                      ...  +++++.+..  ...|..+.-.      ......      .....+++++|.+..+..++.|+.+|.|..-.-...
T Consensus       303 ~~~~~f~s~ssDG~--i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  303 EHNTEFFSLSSDGS--ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             CCCCceEEEecCCc--EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            444  666655322  2334322111      111111      223357889999999999999999999887432211


Q ss_pred             --------eeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECC-CccceecccccccCCCeEEEEECCCCC-eEE
Q psy13076        253 --------KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA-SADLVSELGNPAHKGGVYAVAWKPDGT-QLL  322 (423)
Q Consensus       253 --------~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~  322 (423)
                              +.......|...|.++.++|=+..++..+.|-.+++|... ....+..+.  .+...+++++|||... .|+
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~--~~~~~v~~vaWSptrpavF~  458 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD--SSPDYVTDVAWSPTRPAVFA  458 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh--hccceeeeeEEcCcCceEEE
Confidence                    2233455678899999999988765555559999999876 333333332  3556699999999764 566


Q ss_pred             EEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecC
Q psy13076        323 TASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP  402 (423)
Q Consensus       323 s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp  402 (423)
                      ++..||.+.+||+.....                                          .|+....-+....+.+.|++
T Consensus       459 ~~d~~G~l~iWDLl~~~~------------------------------------------~Pv~s~~~~~~~l~~~~~s~  496 (555)
T KOG1587|consen  459 TVDGDGNLDIWDLLQDDE------------------------------------------EPVLSQKVCSPALTRVRWSP  496 (555)
T ss_pred             EEcCCCceehhhhhcccc------------------------------------------CCcccccccccccceeecCC
Confidence            777799999999865421                                          12222222356677888898


Q ss_pred             CCCeEEEecCCCcEEEeeCC
Q psy13076        403 DRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       403 ~~~~l~s~s~D~~i~~W~~~  422 (423)
                      .++.|+.|...|.+.+|++.
T Consensus       497 ~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  497 NGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             CCcEEEEecCCCcEEEEEcC
Confidence            89999999999999999874

>KOG1523|consensus

Probab=99.70  E-value=2.6e-15  Score=126.54  Aligned_cols=237  Identities=21%  Similarity=0.297  Sum_probs=172.2

Q ss_pred             CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC---CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC
Q psy13076        173 PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET---GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG  249 (423)
Q Consensus       173 ~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~  249 (423)
                      -...+|++.+|++|...+++.....+.  +++....   -+..++++.|...++.++|+|..+ +|++|+.|+.-++|..
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~ev--hiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEV--HIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceE--EEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCcccccc
Confidence            345789999999999998887765543  4444433   346678899999999999999876 4999999999999986


Q ss_pred             C---CceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEE
Q psy13076        250 P---PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTA  324 (423)
Q Consensus       250 ~---~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~  324 (423)
                      +   .++..+.+..++...+++.|+|.+..||+||....|.||=.+.-..  +.+.....+...|.+++|+|++-+|++|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            2   3445566677889999999999999999999999888876544322  1222223467889999999999999999


Q ss_pred             eCCCcEEEEecCCc------------------ceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceE
Q psy13076        325 SGDKTCKLWDIETK------------------SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR  386 (423)
Q Consensus       325 s~d~~i~iwd~~~~------------------~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~  386 (423)
                      |.|++.|+|..--+                  .++.++. ....-...+.++++|..|+-.+.|..+.+-|...+.+.+.
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~  243 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQ  243 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhcc
Confidence            99999999964321                  1112221 1111233455667899999999999999999887764444


Q ss_pred             EeccCCCceeEEEecCCCCeEEEecCCC
Q psy13076        387 VIKGHNKPITALALSPDRGTVFTGSHDG  414 (423)
Q Consensus       387 ~~~~h~~~v~~i~~sp~~~~l~s~s~D~  414 (423)
                      ....-.-|.+++.|-.+ +.++.+|.|+
T Consensus       244 ~~~~~~lP~ls~~~ise-~~vv~ag~~c  270 (361)
T KOG1523|consen  244 SVATAQLPLLSVSWISE-NSVVAAGYDC  270 (361)
T ss_pred             chhhccCCceeeEeecC-CceeecCCCC
Confidence            44444478888888644 3444555553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.70  E-value=8.4e-14  Score=127.85  Aligned_cols=318  Identities=17%  Similarity=0.163  Sum_probs=189.4

Q ss_pred             EEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEe
Q psy13076         18 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLG   97 (423)
Q Consensus        18 ~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~   97 (423)
                      ++++-..+|.|.++|..+ .+.+..+.....+-..+.|+||+++++..+.||.|.++|+.+.+++..+...         
T Consensus         8 ~~V~~~~~~~v~viD~~t-~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G---------   77 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGAT-NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG---------   77 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S---------
T ss_pred             EEEEecCCCEEEEEECCC-CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC---------
Confidence            445566789999999876 5667778765555556889999999999999999999999998776554210         


Q ss_pred             eCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEEEcCCCceeEEeeecC---
Q psy13076         98 GDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVNKEHILKNEFHP---  173 (423)
Q Consensus        98 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~---  173 (423)
                                                        .....++++|||++++++. .++.+.++|.++.+.+.......   
T Consensus        78 ----------------------------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~  123 (369)
T PF02239_consen   78 ----------------------------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV  123 (369)
T ss_dssp             ----------------------------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T
T ss_pred             ----------------------------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc
Confidence                                              1345788999999998776 57999999998877654432211   


Q ss_pred             --CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee-cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076        174 --IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG-EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP  250 (423)
Q Consensus       174 --~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~  250 (423)
                        ...++..+-.+|..+.+++.-.+..... +.+......+. .............|.|++.+.+++...++.+.++|..
T Consensus       124 ~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~-vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~  202 (369)
T PF02239_consen  124 DGPESRVAAIVASPGRPEFVVNLKDTGEIW-VVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK  202 (369)
T ss_dssp             TTS---EEEEEE-SSSSEEEEEETTTTEEE-EEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred             cccCCCceeEEecCCCCEEEEEEccCCeEE-EEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence              2345677888888887666555443322 22322222221 1222334566788999999878888888899999988


Q ss_pred             Cceeeeecc----ccccCeEEE-------EE--CCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076        251 PFKFKMTKQ----EHSRFVQAV-------RY--SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD  317 (423)
Q Consensus       251 ~~~~~~~~~----~~~~~i~~l-------~~--s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~  317 (423)
                      +.++.....    .|......+       -|  .-.+.+.++.-....+.+||..+.+.++++..  ..++ .-+.-||+
T Consensus       203 ~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~--~G~g-lFi~thP~  279 (369)
T PF02239_consen  203 TGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT--QGGG-LFIKTHPD  279 (369)
T ss_dssp             TTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE---SSSS---EE--TT
T ss_pred             cceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC--CCCc-ceeecCCC
Confidence            776543321    222222211       11  12223332333334566788888888887753  2333 56788999


Q ss_pred             CCeEEEE----eCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEE-EEe-CCCcEEEEecCCCCC
Q psy13076        318 GTQLLTA----SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLL-TVS-LSGFISYLDVNNPST  383 (423)
Q Consensus       318 ~~~l~s~----s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~-~~~-~~~~i~~~~~~~~~~  383 (423)
                      ++++...    ...++|.++|.++.+.+.++..........+.+.++|+.+- +.- .++.|.++|..+.+.
T Consensus       280 s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  280 SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             -SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence            9999887    44589999999998776665433322344455667898764 333 344899999988543

...

>KOG0649|consensus

Probab=99.68  E-value=1e-13  Score=112.65  Aligned_cols=273  Identities=16%  Similarity=0.194  Sum_probs=180.0

Q ss_pred             EEEEEECCCCCEEEEEccCCcEEEEEcCCCc--------eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEe
Q psy13076        134 VNVAKYSPSGFYIASGDISGKVRIWDTVNKE--------HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM  205 (423)
Q Consensus       134 i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~  205 (423)
                      |..-+++|.+++++.|+.+|+|-+..+++-.        ......+..+.+++..++|.  ..++++++++ ..++..|.
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG-~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDG-LVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCc-eEEEeeeh
Confidence            4455789999999999999999999875311        11112235577899999998  4566666653 33333332


Q ss_pred             ecCC----cceeccc--C-----CCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC
Q psy13076        206 SETG----TSVGEIS--G-----QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG  274 (423)
Q Consensus       206 ~~~~----~~~~~~~--~-----~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g  274 (423)
                      -+..    +.+.++.  .     .--.|+.+-..|+.+. ++.++.|+.++.||.+..++.+.+.+|.+++-++.--...
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~  168 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN  168 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence            1111    1111111  1     1235788888888776 4445589999999999999999999999999999875555


Q ss_pred             CEEEEEEecCeEEEEECCCccceeccccccc--------CCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076        275 SHFASAGFDGKVFLYDGASADLVSELGNPAH--------KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       275 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      ..+++|+.||++++||.++++.++.+....|        ..+|-+++  -+..+|++|+ -..+.+|.+++.++...|..
T Consensus       169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t~vfpi  245 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSESTCVFPI  245 (325)
T ss_pred             cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCceEEEec
Confidence            6789999999999999999988766542211        22344444  4567888765 46799999999988777754


Q ss_pred             CceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC-CeEEEecCCCcEEEe
Q psy13076        347 GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRW  419 (423)
Q Consensus       347 ~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~-~~l~s~s~D~~i~~W  419 (423)
                      .....    .+.+..+.++++...+.+.-|-+...  .-....+-+...++..|+-.- +.|-.+|..+.+.+.
T Consensus       246 pa~v~----~v~F~~d~vl~~G~g~~v~~~~l~Gv--l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  246 PARVH----LVDFVDDCVLIGGEGNHVQSYTLNGV--LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cccee----EeeeecceEEEeccccceeeeeeccE--EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            43332    34457778888887777766655321  112223333456666665433 344456666666654

>KOG1240|consensus

Probab=99.68  E-value=1.8e-14  Score=140.92  Aligned_cols=262  Identities=15%  Similarity=0.181  Sum_probs=168.4

Q ss_pred             CcccccccCCcceEEEEEECCCC-CEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        121 PAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                      |.+...+.+|...+..++.++.. .+++|||.||+||+||..+-....       +..-..+.+++.+.           
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-------~s~rS~ltys~~~s----------- 1099 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-------GSARSELTYSPEGS----------- 1099 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-------ceeeeeEEEeccCC-----------
Confidence            45566777899888899888754 999999999999999986432110       00001122332221           


Q ss_pred             eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee-------ee--ccccccCeEEEEE
Q psy13076        200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK-------MT--KQEHSRFVQAVRY  270 (423)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~-------~~--~~~~~~~i~~l~~  270 (423)
                                           .+..+...+.++. +|.++.||.+.+.....+...       +.  .......+..-+|
T Consensus      1100 ---------------------r~~~vt~~~~~~~-~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1100 ---------------------RVEKVTMCGNGDQ-FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAF 1157 (1431)
T ss_pred             ---------------------ceEEEEeccCCCe-EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecc
Confidence                                 1222222333332 555566666666654332110       01  1111122333344


Q ss_pred             CCC-CC-EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCc
Q psy13076        271 SPS-GS-HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN  348 (423)
Q Consensus       271 s~~-g~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~  348 (423)
                      ... +. .++.+..-+.|..||.+.......++.....|.|++++.+|-+++++.|...|.+.+||++=+..+..+....
T Consensus      1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~ 1237 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA 1237 (1431)
T ss_pred             cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc
Confidence            432 33 6888888899999999988877777766677899999999999999999999999999999888888876655


Q ss_pred             eeEeeEEEEEe---cCcEEEEEe--CCCcEEEEecCCCCCceEEec------------------cCCCceeEEEecCCCC
Q psy13076        349 QVEDQQVSCLW---QGDYLLTVS--LSGFISYLDVNNPSTPIRVIK------------------GHNKPITALALSPDRG  405 (423)
Q Consensus       349 ~~~~~~~~~~~---~g~~l~~~~--~~~~i~~~~~~~~~~~~~~~~------------------~h~~~v~~i~~sp~~~  405 (423)
                      ......+.+.+   .....++++  ..+.+..|+..++......+.                  .+.-+...+.+...+.
T Consensus      1238 ~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~ 1317 (1431)
T KOG1240|consen 1238 RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG 1317 (1431)
T ss_pred             cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc
Confidence            44444444433   235555544  456799999876532211111                  2333455666777778


Q ss_pred             eEEEecCCCcEEEeeCC
Q psy13076        406 TVFTGSHDGFITRWNAK  422 (423)
Q Consensus       406 ~l~s~s~D~~i~~W~~~  422 (423)
                      .+.+||.|..||.||..
T Consensus      1318 ~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             eeeecCCccceeeccCC
Confidence            89999999999999975

>KOG0290|consensus

Probab=99.67  E-value=5.7e-14  Score=117.00  Aligned_cols=262  Identities=16%  Similarity=0.184  Sum_probs=173.9

Q ss_pred             CCEEEEEecc----ceEEEEeccCCCCceeec--ccccCceeEEEEeCCC-----CeEEEecCCCceEEeecCCcc----
Q psy13076         16 GDYLLTVSLS----GFISYLDVNNPSTPIRVI--KGHNKPITALALSPDR-----GTVFTGSHDGFITRWNAKTEY----   80 (423)
Q Consensus        16 ~~~~~~~~~d----g~i~~~d~~~~~~~~~~~--~gh~~~V~~l~~~~~~-----~~l~sg~~D~~i~vW~~~~~~----   80 (423)
                      ..+||.||.-    ..|.+..++.....+..-  -.|.-|++.+.|.|+.     ++|||.+  ..+|+|.+...+    
T Consensus        59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~  136 (364)
T KOG0290|consen   59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVE  136 (364)
T ss_pred             ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCcee
Confidence            5667777643    566666554322222221  2588899999999975     3455554  369999876321    


Q ss_pred             eeecccCCCC----CCceEEeeCCCC-CeEEEe-cCCeEEEEecCCCcc---cccccCCcceEEEEEECCCC-CEEEEEc
Q psy13076         81 IFATLPRTQR----GQPIVLGGDPKG-KNFLYT-NGNSVIIRNIENPAI---SDIYTEHSCAVNVAKYSPSG-FYIASGD  150 (423)
Q Consensus        81 ~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~---~~~~~~h~~~i~~~~~sp~~-~~l~s~~  150 (423)
                      +...+.....    +....+.+..-. +++..+ -+.+..||+++.+..   ...+..|..+|..++|...+ +.|||.+
T Consensus       137 ~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg  216 (364)
T KOG0290|consen  137 LQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG  216 (364)
T ss_pred             hhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec
Confidence            1111111111    122223333322 233333 377899999998633   55677899999999999854 5889999


Q ss_pred             cCCcEEEEEcCCCceeEEeeecCC-CCCeeEEEECCC-CCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEe
Q psy13076        151 ISGKVRIWDTVNKEHILKNEFHPI-GGPIKDIAWSPD-NQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFK  228 (423)
Q Consensus       151 ~d~~i~vwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  228 (423)
                      .||.+|++|++..++.......+. ..+...++|++. -+++++...+......+-....+..+.++.+|...|+.++|.
T Consensus       217 aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWa  296 (364)
T KOG0290|consen  217 ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWA  296 (364)
T ss_pred             CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEec
Confidence            999999999998776543333332 467778899975 466677666555544455556678889999999999999999


Q ss_pred             cCCCeeEEEEeCCCeEEEEcCCCcee------eeeccccccCeEEEEECCC-CCEEEEE
Q psy13076        229 PSRPFRIITGSEDNTIAVFEGPPFKF------KMTKQEHSRFVQAVRYSPS-GSHFASA  280 (423)
Q Consensus       229 ~~~~~~~~s~s~d~~i~~~~~~~~~~------~~~~~~~~~~i~~l~~s~~-g~~l~s~  280 (423)
                      |.....+.+|+.|....+||......      .+.+. -...|+.++|+|. +..++.+
T Consensus       297 PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~  354 (364)
T KOG0290|consen  297 PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAIC  354 (364)
T ss_pred             CCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEE
Confidence            99888899999999999999754321      11111 3456888999864 4455544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.3e-14  Score=137.39  Aligned_cols=236  Identities=15%  Similarity=0.210  Sum_probs=151.6

Q ss_pred             ccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCC---CceEEeecCCcceeecccCCCCCCceEEeeCC
Q psy13076         24 LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD---GFITRWNAKTEYIFATLPRTQRGQPIVLGGDP  100 (423)
Q Consensus        24 ~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D---~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (423)
                      .+..|++||.+.. . .+.+..|..++.+.+|+|+++.|+..+.+   ..|++||++++.....                
T Consensus       182 ~~~~i~i~d~dg~-~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l----------------  243 (429)
T PRK01742        182 QPYEVRVADYDGF-N-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV----------------  243 (429)
T ss_pred             ceEEEEEECCCCC-C-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE----------------
Confidence            3579999998642 2 45677888899999999999999887654   3699999876532100                


Q ss_pred             CCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEE--EcCCCceeEEeeecCCCCC
Q psy13076        101 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIW--DTVNKEHILKNEFHPIGGP  177 (423)
Q Consensus       101 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vw--d~~~~~~~~~~~~~~~~~~  177 (423)
                                              ..+.+|.   ...+|+|||+.|+.++ .++.+.||  |..+++..   .+......
T Consensus       244 ------------------------~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~---~lt~~~~~  293 (429)
T PRK01742        244 ------------------------ASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS---QLTSGAGN  293 (429)
T ss_pred             ------------------------ecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE---eeccCCCC
Confidence                                    0112232   2468999999888764 67877766  55444322   12223345


Q ss_pred             eeEEEECCCCCeEEEEEcCCceeeEEEeecCC-cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee
Q psy13076        178 IKDIAWSPDNQRMVVVGEGRERFGHVFMSETG-TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM  256 (423)
Q Consensus       178 v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~  256 (423)
                      +.+..|+|||+.++.++..... ..+|..+.. .....+ .+..  ....|+|++.. ++..+.++ +.+||........
T Consensus       294 ~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~-ia~~~~~~-i~~~Dl~~g~~~~  367 (429)
T PRK01742        294 NTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-GGRG--YSAQISADGKT-LVMINGDN-VVKQDLTSGSTEV  367 (429)
T ss_pred             cCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE-EEEEcCCC-EEEEECCCCCeEE
Confidence            7789999999998877643322 345554332 222222 2222  34679999987 44444454 5558865544322


Q ss_pred             eccccccCeEEEEECCCCCEEEEEEecCeEEEEEC--CCccceecccccccCCCeEEEEECCC
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDG--ASADLVSELGNPAHKGGVYAVAWKPD  317 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~--~~~~~~~~~~~~~~~~~i~~l~~~~~  317 (423)
                      .....  ....+.|+|+|++++.++.++.+.+|..  .+++....+.  .|.+.+...+|+|-
T Consensus       368 lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~--~~~g~~~~p~wsp~  426 (429)
T PRK01742        368 LSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP--GSDGQVKFPAWSPY  426 (429)
T ss_pred             ecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc--CCCCCCCCcccCCC
Confidence            11111  1245789999999999999998887775  3566666663  57777889999984

>KOG1523|consensus

Probab=99.67  E-value=1.7e-14  Score=121.64  Aligned_cols=236  Identities=20%  Similarity=0.293  Sum_probs=164.0

Q ss_pred             cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc
Q psy13076         47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI  126 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  126 (423)
                      -+||+|-+|++|++.+|.+-....|.|+.......                                       .+..++
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~---------------------------------------w~~~ht   50 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL---------------------------------------WEPAHT   50 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCC---------------------------------------ceecee
Confidence            46999999999999999999888888886643211                                       123456


Q ss_pred             ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEc-CCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEe
Q psy13076        127 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT-VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM  205 (423)
Q Consensus       127 ~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~  205 (423)
                      +..|...|+.++|+|....+++++.|..-.+|.. ...+-.....+..++..++++.|+|.+..+++.+..+...  +..
T Consensus        51 ls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~is--Vcy  128 (361)
T KOG1523|consen   51 LSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLIS--VCY  128 (361)
T ss_pred             hhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEE--EEE
Confidence            7889999999999999999999999999999998 3333222233334457789999999999888876654433  333


Q ss_pred             ecCCcce----ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC-------CC----c-------eeeeecccccc
Q psy13076        206 SETGTSV----GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG-------PP----F-------KFKMTKQEHSR  263 (423)
Q Consensus       206 ~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~-------~~----~-------~~~~~~~~~~~  263 (423)
                      .+.....    +.-+...+.|.+++|+|++- ++++|+.|+..++|..       ++    .       .+..+......
T Consensus       129 ~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~gg  207 (361)
T KOG1523|consen  129 YEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGG  207 (361)
T ss_pred             EecccceehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCC
Confidence            3332222    12234556789999999876 4889999999999842       11    1       01112224567


Q ss_pred             CeEEEEECCCCCEEEEEEecCeEEEEECCCccc-eecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        264 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADL-VSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       264 ~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      .+..+.|+|+|..|+-.+.|..+.+=|...... ...+. ..+ ....++.|-.+. .++.++.|
T Consensus       208 wvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~-~~~-lP~ls~~~ise~-~vv~ag~~  269 (361)
T KOG1523|consen  208 WVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA-TAQ-LPLLSVSWISEN-SVVAAGYD  269 (361)
T ss_pred             ceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchh-hcc-CCceeeEeecCC-ceeecCCC
Confidence            899999999999999999999999988665542 22222 122 455677775433 34444555

>KOG4227|consensus

Probab=99.66  E-value=3.3e-14  Score=122.99  Aligned_cols=279  Identities=13%  Similarity=0.160  Sum_probs=183.3

Q ss_pred             eCCEEEEEeccceEEEEecc-----CCCCceeeccc-ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076         15 QGDYLLTVSLSGFISYLDVN-----NPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~-----~~~~~~~~~~g-h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      .|.||++|+.|..+++|.++     ...+|+.+... |.+.|.||+|....+.|+||+.+++|..-|+++...+..+...
T Consensus        67 N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~  146 (609)
T KOG4227|consen   67 NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN  146 (609)
T ss_pred             CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc
Confidence            69999999999999999863     23467766655 5689999999999999999999999999999986544322110


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc-eeE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-HIL  167 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~-~~~  167 (423)
                                                              ...+.|..+..+|..+.+++.+.++.|.+||..... +..
T Consensus       147 ----------------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~  186 (609)
T KOG4227|consen  147 ----------------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS  186 (609)
T ss_pred             ----------------------------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc
Confidence                                                    112467778889988999999999999999987654 221


Q ss_pred             EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC-ccee------cccCCCcceeEEEEecCCCeeEEEEeC
Q psy13076        168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG-TSVG------EISGQSKPINSCDFKPSRPFRIITGSE  240 (423)
Q Consensus       168 ~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~i~~~~~~~~~~~~~~s~s~  240 (423)
                      .......+.....+-|+|....|+.+....+.. .+|+.... ..+-      .+......-.++.|+|++.. +++--.
T Consensus       187 ~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~-~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q-~msiRR  264 (609)
T KOG4227|consen  187 LVLPANSGKNFYTAEFHPETPALILVNSETGGP-NVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ-FMSIRR  264 (609)
T ss_pred             eeeecCCCccceeeeecCCCceeEEeccccCCC-CceeeccccchHHhhhccccCcccchhhhheeeCCCCCe-ehhhhc
Confidence            111222334566788999988877776554432 23433221 1111      11111222356788988875 444333


Q ss_pred             CCeEEEEcCCCce-eeeecccc------ccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc------eec--------
Q psy13076        241 DNTIAVFEGPPFK-FKMTKQEH------SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL------VSE--------  299 (423)
Q Consensus       241 d~~i~~~~~~~~~-~~~~~~~~------~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~------~~~--------  299 (423)
                      ...-.+||..... +.++....      ...+.+++|--|- .+++|+.+=.|.+|.+.....      +-.        
T Consensus       265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~  343 (609)
T KOG4227|consen  265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE  343 (609)
T ss_pred             cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence            3444455543221 11222111      1235567776543 489999999999997642110      000        


Q ss_pred             ------c-cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        300 ------L-GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       300 ------~-~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                            + ...+|...+..+.|+|...+|++.+-.+.++||.-.
T Consensus       344 ~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  344 IFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             heecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence                  0 113688889999999999999999999999999754

>KOG2139|consensus

Probab=99.64  E-value=4.6e-13  Score=114.94  Aligned_cols=289  Identities=14%  Similarity=0.171  Sum_probs=173.3

Q ss_pred             EEEEeccceEEEEeccCCCCceeeccc-ccCceeEEEEeCCCCe-EEEecCCCceEEeecCCc----ceeec--------
Q psy13076         19 LLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGT-VFTGSHDGFITRWNAKTE----YIFAT--------   84 (423)
Q Consensus        19 ~~~~~~dg~i~~~d~~~~~~~~~~~~g-h~~~V~~l~~~~~~~~-l~sg~~D~~i~vW~~~~~----~~~~~--------   84 (423)
                      +|.+..|..|++.|.+.  +....++. -...|+|++|-|.+.- |+.|+. +-|.+|.....    +.+.+        
T Consensus       113 fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qv  189 (445)
T KOG2139|consen  113 FAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQV  189 (445)
T ss_pred             hhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhh
Confidence            45678889999998753  44556664 4678999999997654 555554 66899986531    11111        


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~  162 (423)
                      +..........+.+.++|..++..+  +..+.+|+++++........--+.++.+.|||||.++..+.-|+..++|+...
T Consensus       190 l~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q  269 (445)
T KOG2139|consen  190 LQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ  269 (445)
T ss_pred             eeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence            1111112334578899998888764  56899999999887776655667899999999999999999999999997543


Q ss_pred             CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076        163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                      .......  ....+.|....|+|+|++++.+..+.....                      ++.|........-.++.-.
T Consensus       270 ~wt~erw--~lgsgrvqtacWspcGsfLLf~~sgsp~ly----------------------sl~f~~~~~~~~~~~~~k~  325 (445)
T KOG2139|consen  270 SWTKERW--ILGSGRVQTACWSPCGSFLLFACSGSPRLY----------------------SLTFDGEDSVFLRPQSIKR  325 (445)
T ss_pred             cceecce--eccCCceeeeeecCCCCEEEEEEcCCceEE----------------------EEeecCCCccccCccccee
Confidence            3222121  122468999999999999988765544322                      2222222111000111111


Q ss_pred             eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCe--------EEEEECCCccceecc--cccccCCCeEEE
Q psy13076        243 TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK--------VFLYDGASADLVSEL--GNPAHKGGVYAV  312 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~--------i~vwd~~~~~~~~~~--~~~~~~~~i~~l  312 (423)
                      ..-+-|.+.....-....-.+.+.+++|.|.|.++|+.-..+.        |..||.+....+.-.  ...+. ....-+
T Consensus       326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~g-e~P~~I  404 (445)
T KOG2139|consen  326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGG-EYPAYI  404 (445)
T ss_pred             eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccC-CCCceE
Confidence            1122222211110001112355789999999999998765443        456776543322211  11111 113456


Q ss_pred             EECC---CCCeEEEEeCCCcEEEEec
Q psy13076        313 AWKP---DGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       313 ~~~~---~~~~l~s~s~d~~i~iwd~  335 (423)
                      .|+|   ++.+|..+=.-|.+.-|++
T Consensus       405 sF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  405 SFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             EeeecccCCcEEEEEeccCceEeeee
Confidence            6666   4566666655566655553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.63  E-value=9.2e-13  Score=121.03  Aligned_cols=308  Identities=19%  Similarity=0.231  Sum_probs=183.5

Q ss_pred             cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCC
Q psy13076        109 NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ  188 (423)
Q Consensus       109 ~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  188 (423)
                      ..+.+.+.|.++.+....+......-..+.|+|||++++.++.|+.|.++|+.+.+.+.....   ......+++++||+
T Consensus        14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G~~~~~i~~s~DG~   90 (369)
T PF02239_consen   14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---GGNPRGIAVSPDGK   90 (369)
T ss_dssp             GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEEEEEEE--TTT
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---CCCcceEEEcCCCC
Confidence            467888889888888887765444445578999999999999999999999998876544332   34568899999999


Q ss_pred             eEEEEEcCCceeeEEEeecCCcceecccCC-------CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce-eeeeccc
Q psy13076        189 RMVVVGEGRERFGHVFMSETGTSVGEISGQ-------SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-FKMTKQE  260 (423)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~-~~~~~~~  260 (423)
                      +++++...... ..+++.++.+.+..+...       ...+..+..+|..+..+++--+.+.|.+.|....+ +......
T Consensus        91 ~~~v~n~~~~~-v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~  169 (369)
T PF02239_consen   91 YVYVANYEPGT-VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK  169 (369)
T ss_dssp             EEEEEEEETTE-EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE
T ss_pred             EEEEEecCCCc-eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec
Confidence            99887654433 345666666666655432       23456666677777534444445777777643322 2222233


Q ss_pred             cccCeEEEEECCCCCEEEEE-EecCeEEEEECCCccceeccc--ccccCCCeEEE-------EE--CCCCCeEEEEeCCC
Q psy13076        261 HSRFVQAVRYSPSGSHFASA-GFDGKVFLYDGASADLVSELG--NPAHKGGVYAV-------AW--KPDGTQLLTASGDK  328 (423)
Q Consensus       261 ~~~~i~~l~~s~~g~~l~s~-s~dg~i~vwd~~~~~~~~~~~--~~~~~~~i~~l-------~~--~~~~~~l~s~s~d~  328 (423)
                      .........|+|+|+|++.+ ..++.|-++|.++++....+.  ...|.+....+       .|  ...+...++.-...
T Consensus       170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~  249 (369)
T PF02239_consen  170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD  249 (369)
T ss_dssp             --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--
T ss_pred             ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCC
Confidence            34456678999999987665 457789999999887654432  12343333322       12  12334443444445


Q ss_pred             cEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEE----eCCCcEEEEecCCCCCceEEec-cCCCceeEEEecCC
Q psy13076        329 TCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTV----SLSGFISYLDVNNPSTPIRVIK-GHNKPITALALSPD  403 (423)
Q Consensus       329 ~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~----~~~~~i~~~~~~~~~~~~~~~~-~h~~~v~~i~~sp~  403 (423)
                      .+.+||....+.+++.......  .-+..+|++.++.+.    ...+.|.++|.++.+. ++.+. +-..++..+.|++|
T Consensus       250 ~v~v~d~~~wkvv~~I~~~G~g--lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~-~~~i~~~~~~~~~h~ef~~d  326 (369)
T PF02239_consen  250 PVSVHDDYAWKVVKTIPTQGGG--LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV-VKTITPGPGKRVVHMEFNPD  326 (369)
T ss_dssp             TTT-STTTBTSEEEEEE-SSSS----EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE-EE-HHHHHT--EEEEEE-TT
T ss_pred             ccccchhhcCeEEEEEECCCCc--ceeecCCCCccEEeeccCCCCCceEEEEECcCcce-eEEEeccCCCcEeccEECCC
Confidence            6778999999888887653322  345567899998776    4457899999988632 33332 22345999999999


Q ss_pred             CCeE-EEecCCC-cEEEeeCCC
Q psy13076        404 RGTV-FTGSHDG-FITRWNAKT  423 (423)
Q Consensus       404 ~~~l-~s~s~D~-~i~~W~~~~  423 (423)
                      |+.+ +|...++ .|.++|..|
T Consensus       327 G~~v~vS~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  327 GKEVWVSVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             SSEEEEEEE--TTEEEEEETTT
T ss_pred             CCEEEEEEecCCCEEEEEECCC
Confidence            9975 3444433 899999876

...

>KOG1310|consensus

Probab=99.63  E-value=9.2e-15  Score=131.54  Aligned_cols=244  Identities=17%  Similarity=0.273  Sum_probs=156.4

Q ss_pred             eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC
Q psy13076         41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN  120 (423)
Q Consensus        41 ~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  120 (423)
                      ..|.||.+-|+||.|+.+|.+|+|||.|-.+.|||.-..+.++.                                    
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs------------------------------------   87 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS------------------------------------   87 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee------------------------------------
Confidence            36889999999999999999999999999999999764443332                                    


Q ss_pred             CcccccccCCcceEEEEEECC--CCCEEEEEccCCcEEEEEcCCCce--------eEEeeecCCCCCeeEEEECCCCCeE
Q psy13076        121 PAISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRM  190 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~~~--------~~~~~~~~~~~~v~~v~~s~~~~~~  190 (423)
                           +-+||...|.+++|-|  +.++++||..|..|+++|+...+.        .....+..+...|..++-.|++...
T Consensus        88 -----I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Pht  162 (758)
T KOG1310|consen   88 -----ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHT  162 (758)
T ss_pred             -----eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCce
Confidence                 2358999999999998  678999999999999999874221        1112233455678889999998666


Q ss_pred             EEEEcCCceeeEEEeecCCcc---------eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc-
Q psy13076        191 VVVGEGRERFGHVFMSETGTS---------VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-  260 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~-  260 (423)
                      +-.+..++.....-..+...+         +..+..+.-...+++.+|..++.++.|+.|--.++||.+.......... 
T Consensus       163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~  242 (758)
T KOG1310|consen  163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT  242 (758)
T ss_pred             EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence            555554444333333332111         1122233345679999999999999999999999999432111100000 


Q ss_pred             ----cccCeEEE-EECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076        261 ----HSRFVQAV-RYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       261 ----~~~~i~~l-~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~  335 (423)
                          .+..-.|+ -|+|.+-    ..          ..+...      ..-..++-+.|+|+|.-|+..-....|.++|+
T Consensus       243 ~~~~pp~~~~cv~yf~p~hl----kn----------~~gn~~------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  243 MNTCPPKDCRCVRYFSPGHL----KN----------SQGNLD------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             ccCCCCcccchhheecCccc----cC----------cccccc------cceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence                01111122 1222221    00          011000      01123567889999976666555557999999


Q ss_pred             CCcceeeeee
Q psy13076        336 ETKSAVSEFL  345 (423)
Q Consensus       336 ~~~~~i~~~~  345 (423)
                      ..++.+..+.
T Consensus       303 n~~~~~~~y~  312 (758)
T KOG1310|consen  303 NEDKSPTPYF  312 (758)
T ss_pred             cCCCCceeec
Confidence            8776654443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.62  E-value=8.9e-14  Score=116.17  Aligned_cols=98  Identities=24%  Similarity=0.456  Sum_probs=70.9

Q ss_pred             EeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec---CeEEEEECCCccceecccccccCCCeEEEEE
Q psy13076        238 GSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD---GKVFLYDGASADLVSELGNPAHKGGVYAVAW  314 (423)
Q Consensus       238 ~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~  314 (423)
                      |..++.+.+|+.. .+....+  ....++.+.|+|+|+++++|+.+   |.+.+||.++.+.+.+..   | ..+..++|
T Consensus        79 g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~-~~~t~~~W  151 (194)
T PF08662_consen   79 GSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---H-SDATDVEW  151 (194)
T ss_pred             ccCCcccEEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---c-CcEEEEEE
Confidence            3345567777764 2222222  24557789999999999998754   669999999887776652   3 34789999


Q ss_pred             CCCCCeEEEEeC------CCcEEEEecCCcceeee
Q psy13076        315 KPDGTQLLTASG------DKTCKLWDIETKSAVSE  343 (423)
Q Consensus       315 ~~~~~~l~s~s~------d~~i~iwd~~~~~~i~~  343 (423)
                      +|+|++|+++..      |..++||+.. |+++.+
T Consensus       152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  152 SPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             cCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            999999999874      6789999985 444433

>KOG2394|consensus

Probab=99.61  E-value=1.8e-13  Score=123.06  Aligned_cols=224  Identities=21%  Similarity=0.378  Sum_probs=131.6

Q ss_pred             eCCCCCeEEEecCCeEEEEecCCC------cccccccCCcceEEEEEE-----CCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         98 GDPKGKNFLYTNGNSVIIRNIENP------AISDIYTEHSCAVNVAKY-----SPSGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        98 ~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~h~~~i~~~~~-----sp~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                      .+-.|..+.+..+..+.+|....+      -....|.+....  +.+|     .|.+--++.|=..|.+.+.|....+..
T Consensus       131 ~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~--cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~s  208 (636)
T KOG2394|consen  131 QSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPT--CHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVS  208 (636)
T ss_pred             ccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCc--eecccccccCCCCcceEEeeccCceEEecchhhHHH
Confidence            334566777778888888887632      112334433322  2233     345666666767788888886543221


Q ss_pred             E--EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC---C
Q psy13076        167 L--KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE---D  241 (423)
Q Consensus       167 ~--~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~---d  241 (423)
                      .  ..........|+++.|-|.++.+++++.-...   ++..+.     ++...........+.....+.+.++-.   +
T Consensus       209 klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGn---lyly~~-----~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r  280 (636)
T KOG2394|consen  209 KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGN---LYLYDK-----EIVCGATAPSYQALKDGDQFAILTSKSKKTR  280 (636)
T ss_pred             HhhhhcccccccceEEEEEEeCCCceEEEEEecCc---eEEeec-----cccccCCCCcccccCCCCeeEEeeeeccccC
Confidence            1  11111123678999999977766666543322   222111     000000000000111111121211100   0


Q ss_pred             CeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE
Q psy13076        242 NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL  321 (423)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  321 (423)
                      +-+.-           ..--...|...+|+|||++||+.+.||.++|||..+-+++-.+.  ..-++..|++|+|||+|+
T Consensus       281 NPv~~-----------w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGKyI  347 (636)
T KOG2394|consen  281 NPVAR-----------WHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGKYI  347 (636)
T ss_pred             Cccce-----------eEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--hhccceEEEEEcCCccEE
Confidence            11111           11123368889999999999999999999999988776654442  356788999999999999


Q ss_pred             EEEeCCCcEEEEecCCcceeeee
Q psy13076        322 LTASGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       322 ~s~s~d~~i~iwd~~~~~~i~~~  344 (423)
                      ++|+.|.-|.||.+..++.+..-
T Consensus       348 vtGGEDDLVtVwSf~erRVVARG  370 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEERRVVARG  370 (636)
T ss_pred             EecCCcceEEEEEeccceEEEec
Confidence            99999999999999988877543

>KOG2139|consensus

Probab=99.61  E-value=1.8e-12  Score=111.34  Aligned_cols=300  Identities=14%  Similarity=0.179  Sum_probs=176.3

Q ss_pred             ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCC-CeEEEecCCeEEEEecCCC----cc
Q psy13076         49 PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG-KNFLYTNGNSVIIRNIENP----AI  123 (423)
Q Consensus        49 ~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~----~~  123 (423)
                      -+..++|++.---++++..|-+||++|-++. +-..+....+.+..++++.|.+ ..++..+...+.+|..+..    ..
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~  178 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN  178 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence            4667899886556889999999999997762 2223333344566678888865 5566677888889976522    11


Q ss_pred             --------cc--cccCCcceEEEEEECCCCCEEEEEcc-CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEE
Q psy13076        124 --------SD--IYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV  192 (423)
Q Consensus       124 --------~~--~~~~h~~~i~~~~~sp~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~  192 (423)
                              ..  ...|| ..|++++|.+||..+++++. |..|+|||..++......-  .-.+.+.-+.||||+.++++
T Consensus       179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  179 IRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--KGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--cCCCceeeEEEcCCCCEEEE
Confidence                    11  22456 68999999999999999987 5789999998776543221  12356788999999999988


Q ss_pred             EEcCCceeeEEEe-ecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEEC
Q psy13076        193 VGEGRERFGHVFM-SETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYS  271 (423)
Q Consensus       193 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s  271 (423)
                      +.-+.  ...+|. .++-.+..-.-+. ..+....|+|.+.+++.+++..-.+                     .++.|.
T Consensus       256 At~da--vfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~sgsp~l---------------------ysl~f~  311 (445)
T KOG2139|consen  256 ATCDA--VFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFACSGSPRL---------------------YSLTFD  311 (445)
T ss_pred             ecccc--eeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEEcCCceE---------------------EEEeec
Confidence            76443  234442 2222222222222 2788888899888877777654332                     223332


Q ss_pred             CCCCE-EEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCc--------EEEEecCCcceee
Q psy13076        272 PSGSH-FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT--------CKLWDIETKSAVS  342 (423)
Q Consensus       272 ~~g~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~--------i~iwd~~~~~~i~  342 (423)
                      ..... .-.++.-....+-|+..-....-  .....+++.+++|+|.|.+|++.-+.+.        |.+||.+....+.
T Consensus       312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag--~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve  389 (445)
T KOG2139|consen  312 GEDSVFLRPQSIKRVLLIADLQEVTICAG--QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE  389 (445)
T ss_pred             CCCccccCcccceeeeeeccchhhhhhcC--cccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence            22111 11222222233334321110000  0113567889999999999998766543        5667765443322


Q ss_pred             ee----eeCceeEeeEEEEEe-cCcEEEEEeCCCcEEEEec
Q psy13076        343 EF----LMGNQVEDQQVSCLW-QGDYLLTVSLSGFISYLDV  378 (423)
Q Consensus       343 ~~----~~~~~~~~~~~~~~~-~g~~l~~~~~~~~i~~~~~  378 (423)
                      -.    ..+..-...++.++. +|..|..+-..|.+-.|++
T Consensus       390 ls~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  390 LSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             EEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence            21    111111222222222 4455555666666655544

>KOG2111|consensus

Probab=99.61  E-value=6.2e-12  Score=106.40  Aligned_cols=178  Identities=21%  Similarity=0.364  Sum_probs=125.2

Q ss_pred             CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec-CCcceecccCCCcceeEEEEecCC
Q psy13076        153 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE-TGTSVGEISGQSKPINSCDFKPSR  231 (423)
Q Consensus       153 ~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~  231 (423)
                      ..+.|||=....++....+   ..+|.+|.++++.  ++++-..   ...+|... ..+.++.+.....|---|++.|..
T Consensus        75 NkviIWDD~k~~~i~el~f---~~~I~~V~l~r~r--iVvvl~~---~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~  146 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSF---NSEIKAVKLRRDR--IVVVLEN---KIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS  146 (346)
T ss_pred             ceEEEEecccCcEEEEEEe---ccceeeEEEcCCe--EEEEecC---eEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence            5799999555555544444   3689999999863  3443322   12233322 233444444333333355555543


Q ss_pred             CeeEE--EEeCCCeEEEEcCCCcee--eeeccccccCeEEEEECCCCCEEEEEEecCe-EEEEECCCccceecccccccC
Q psy13076        232 PFRII--TGSEDNTIAVFEGPPFKF--KMTKQEHSRFVQAVRYSPSGSHFASAGFDGK-VFLYDGASADLVSELGNPAHK  306 (423)
Q Consensus       232 ~~~~~--s~s~d~~i~~~~~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~  306 (423)
                      ...++  -|..-|.+.+-+....+.  .....+|...|.+++.+.+|.++|++|..|+ |+|||..+++.+.++......
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~  226 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR  226 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch
Confidence            32222  234567888877543333  3556789999999999999999999999997 789999999999998766666


Q ss_pred             CCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       307 ~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      ..|.+++|+|+..+|+++|+.||++||.++..
T Consensus       227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             heEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            78999999999999999999999999998753

>KOG2111|consensus

Probab=99.60  E-value=5.9e-13  Score=112.46  Aligned_cols=238  Identities=19%  Similarity=0.201  Sum_probs=151.3

Q ss_pred             EEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC-c----eeeEEEeecCC
Q psy13076        135 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR-E----RFGHVFMSETG  209 (423)
Q Consensus       135 ~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~-~----~~~~~~~~~~~  209 (423)
                      .++.|+.|..-++.|..+| .|||+.+--+.....++...+-.+..+.|..  ++++.++++. .    ....+|+....
T Consensus         9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEecccC
Confidence            4488999998888886555 8999975322211222222222233333332  4566665443 2    34567776556


Q ss_pred             cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC-Cceeeeeccc--cccCeEEEEECCC--CCEEEE-EEec
Q psy13076        210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-PFKFKMTKQE--HSRFVQAVRYSPS--GSHFAS-AGFD  283 (423)
Q Consensus       210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~-~~~~~~~~~~--~~~~i~~l~~s~~--g~~l~s-~s~d  283 (423)
                      ..+.++.. ..+|..+.+.++.   +++ -.++.|++|..+ ..+.....+.  .+...  ++.+|.  ..+||. |-.-
T Consensus        86 ~~i~el~f-~~~I~~V~l~r~r---iVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGl--C~~~~~~~k~~LafPg~k~  158 (346)
T KOG2111|consen   86 RCIIELSF-NSEIKAVKLRRDR---IVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGL--CSLCPTSNKSLLAFPGFKT  158 (346)
T ss_pred             cEEEEEEe-ccceeeEEEcCCe---EEE-EecCeEEEEEcCCChhheeeeecccCCCce--EeecCCCCceEEEcCCCcc
Confidence            66655543 3478888888763   333 357789999765 2232222221  12223  334443  335554 4456


Q ss_pred             CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCc-EEEEecCCcceeeeeeeCce-eEeeEEEEEecC
Q psy13076        284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT-CKLWDIETKSAVSEFLMGNQ-VEDQQVSCLWQG  361 (423)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~-i~iwd~~~~~~i~~~~~~~~-~~~~~~~~~~~g  361 (423)
                      |+|.|-|+...+.-......+|...|.+++++-+|..+||+|..|| |||||..+++.+.++..+.+ .....+++++++
T Consensus       159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS  238 (346)
T ss_pred             ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence            8999999876554222223589999999999999999999999998 89999999999999876643 334456667777


Q ss_pred             cEEEEEeCCCcEEEEecCCCC
Q psy13076        362 DYLLTVSLSGFISYLDVNNPS  382 (423)
Q Consensus       362 ~~l~~~~~~~~i~~~~~~~~~  382 (423)
                      .+|++.|..|++.++.++...
T Consensus       239 s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  239 SWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             cEEEEEcCCCeEEEEEeecCC
Confidence            777777777777777766543

>KOG1517|consensus

Probab=99.60  E-value=5.9e-13  Score=128.68  Aligned_cols=292  Identities=15%  Similarity=0.160  Sum_probs=179.4

Q ss_pred             EEEEeCCEEEEEeccceEEEEeccCCCCceeecccc---cCceeEEEEeC--CCCeEEEecCCCceEEeecC-Ccceeec
Q psy13076         11 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH---NKPITALALSP--DRGTVFTGSHDGFITRWNAK-TEYIFAT   84 (423)
Q Consensus        11 ~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh---~~~V~~l~~~~--~~~~l~sg~~D~~i~vW~~~-~~~~~~~   84 (423)
                      .+++=-..++++..--.|++||...+ +.+..|..+   ...|+.+.+-.  |..+|++|+.||.||||+-- ++.    
T Consensus      1071 ~~hpf~p~i~~ad~r~~i~vwd~e~~-~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~---- 1145 (1387)
T KOG1517|consen 1071 KFHPFEPQIAAADDRERIRVWDWEKG-RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW---- 1145 (1387)
T ss_pred             eecCCCceeEEcCCcceEEEEecccC-ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc----
Confidence            33432345666665678999999753 334445433   35677777644  45689999999999999632 110    


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE  164 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~  164 (423)
                           ....++-++.+-                      .....+-.+.=..+.|.....+|++++.-..|||||..+..
T Consensus      1146 -----~~~eLVTaw~~L----------------------s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1146 -----KKPELVTAWSSL----------------------SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred             -----CCceeEEeeccc----------------------cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce
Confidence                 011111111110                      00111111111234566644455555557899999987654


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc---ceecccCCCcc--eeEEEEecCCCeeEEEEe
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT---SVGEISGQSKP--INSCDFKPSRPFRIITGS  239 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--i~~~~~~~~~~~~~~s~s  239 (423)
                      .....-+ ..+..++++.-+..+..++++|..++. .++++.....   .+...+.|+..  |..+.+.+++--.+++|+
T Consensus      1199 ~~~diP~-~s~t~vTaLS~~~~~gn~i~AGfaDGs-vRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs 1276 (1387)
T KOG1517|consen 1199 VVADIPY-GSSTLVTALSADLVHGNIIAAGFADGS-VRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS 1276 (1387)
T ss_pred             eEeeccc-CCCccceeecccccCCceEEEeecCCc-eEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec
Confidence            4433222 223456666655444445555544433 4566554332   23445566666  889999987765799999


Q ss_pred             CCCeEEEEcCCCc-eee-eeccccc---cCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc-----cccCCCe
Q psy13076        240 EDNTIAVFEGPPF-KFK-MTKQEHS---RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN-----PAHKGGV  309 (423)
Q Consensus       240 ~d~~i~~~~~~~~-~~~-~~~~~~~---~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~~~~~~i  309 (423)
                      .||.|++||.+.. +.. .+...|.   ...+++..+++...+|+|+. +.|+||++.. +.+..+..     ....+.+
T Consensus      1277 ~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1277 QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred             cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCc
Confidence            9999999997642 111 1111222   24899999999999999998 9999999753 33322221     1234567


Q ss_pred             EEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        310 YAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       310 ~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      .+++|||-.-+|++|+.|.+|.||.....
T Consensus      1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ceeeecchhHhhhhccCCceEEEeecCCc
Confidence            99999999999999999999999986543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.6e-12  Score=122.95  Aligned_cols=238  Identities=16%  Similarity=0.210  Sum_probs=147.5

Q ss_pred             ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec---CCCceEEeecCCcceeecccCCCCCCceEEeeCCCC
Q psy13076         26 GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS---HDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG  102 (423)
Q Consensus        26 g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~---~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (423)
                      ..|+++|.+. .. .+.+..+.+++.+.+|+|||+.|+..+   .+..|.+|++.+++....                  
T Consensus       179 ~~l~~~d~dg-~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l------------------  238 (429)
T PRK03629        179 YELRVSDYDG-YN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV------------------  238 (429)
T ss_pred             eeEEEEcCCC-CC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc------------------
Confidence            4799999863 22 334455677999999999999887643   345688888766532110                  


Q ss_pred             CeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEE-ccCC--cEEEEEcCCCceeEEeeecCCCCCee
Q psy13076        103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-DISG--KVRIWDTVNKEHILKNEFHPIGGPIK  179 (423)
Q Consensus       103 ~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-~~d~--~i~vwd~~~~~~~~~~~~~~~~~~v~  179 (423)
                                            ..+.+|   +....|+|||+.|+.. +.++  .|.+||+++++...   .......+.
T Consensus       239 ----------------------~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~---lt~~~~~~~  290 (429)
T PRK03629        239 ----------------------ASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ---VTDGRSNNT  290 (429)
T ss_pred             ----------------------cCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---ccCCCCCcC
Confidence                                  011222   2246899999988754 4444  58888987765422   112224567


Q ss_pred             EEEECCCCCeEEEEEcCCceeeEEEeecC-CcceecccCCCcceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCceeee
Q psy13076        180 DIAWSPDNQRMVVVGEGRERFGHVFMSET-GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFKM  256 (423)
Q Consensus       180 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~~~~~  256 (423)
                      ...|+|||+.++.++..... ..++..+. +.....+...........|+|++.+++.++..++  .|.+|+........
T Consensus       291 ~~~wSPDG~~I~f~s~~~g~-~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~  369 (429)
T PRK03629        291 EPTWFPDSQNLAYTSDQAGR-PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV  369 (429)
T ss_pred             ceEECCCCCEEEEEeCCCCC-ceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence            88999999998887754322 23443322 2223334333344567889999988655555443  47778765443322


Q ss_pred             eccccccCeEEEEECCCCCEEEEEEecCe---EEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAGFDGK---VFLYDGASADLVSELGNPAHKGGVYAVAWKPD  317 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s~dg~---i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~  317 (423)
                      .....  ......|+|||++|+.++.++.   +.+++. +++....+.  .|.+.+...+|+|-
T Consensus       370 Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~--~~~~~~~~p~Wsp~  428 (429)
T PRK03629        370 LTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLP--ATDGQVKFPAWSPY  428 (429)
T ss_pred             eCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECc--cCCCCcCCcccCCC
Confidence            11111  2235789999999999888764   667776 444445553  46777888999873

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.2e-12  Score=123.84  Aligned_cols=238  Identities=13%  Similarity=0.151  Sum_probs=141.7

Q ss_pred             ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCC---CceEEeecCCcceeecccCCCCCCceEEeeCCCC
Q psy13076         26 GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD---GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG  102 (423)
Q Consensus        26 g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D---~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (423)
                      ..|+++|.+  ......+..+.+++.+.+|+||++.|+..+.+   ..|.+||+.+++....                  
T Consensus       176 ~~L~~~D~d--G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l------------------  235 (427)
T PRK02889        176 YQLQISDAD--GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV------------------  235 (427)
T ss_pred             cEEEEECCC--CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe------------------
Confidence            467777763  33444566788899999999999988776543   3588889876543210                  


Q ss_pred             CeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCcEEEEEcC--CCceeEEeeecCCCCCee
Q psy13076        103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTV--NKEHILKNEFHPIGGPIK  179 (423)
Q Consensus       103 ~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~v~  179 (423)
                                               ....+.+....|+|||+.++ +.+.++..+||.+.  .+.. .  .+....+...
T Consensus       236 -------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~--~lt~~~~~~~  287 (427)
T PRK02889        236 -------------------------ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-R--RLTQSSGIDT  287 (427)
T ss_pred             -------------------------ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-E--ECCCCCCCCc
Confidence                                     00111234678999998886 56778887777653  3221 1  1112223345


Q ss_pred             EEEECCCCCeEEEEEcCCceeeEEEeec-CCcceecccCCCcceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCceeee
Q psy13076        180 DIAWSPDNQRMVVVGEGRERFGHVFMSE-TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFKM  256 (423)
Q Consensus       180 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~~~~~  256 (423)
                      ...|+|||+.++.++..... ..++..+ .+.....+...........|+|++.+++.++..++  .|.+|+........
T Consensus       288 ~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~  366 (427)
T PRK02889        288 EPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA  366 (427)
T ss_pred             CeEEcCCCCEEEEEecCCCC-cEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence            67899999998877643222 2344432 22222223222233445789999987555444333  68888876544332


Q ss_pred             eccccccCeEEEEECCCCCEEEEEEecC---eEEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAGFDG---KVFLYDGASADLVSELGNPAHKGGVYAVAWKPD  317 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~  317 (423)
                      ....  .......|+|||++|+.++.++   .+.+.+. +++....+.  .+.+.+...+|+|-
T Consensus       367 lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~--~~~g~~~~p~wsp~  425 (427)
T PRK02889        367 LTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS--VQGGDVREPSWGPF  425 (427)
T ss_pred             ccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee--cCCCCCCCCccCCC
Confidence            2211  2235679999999988877654   2445554 344443342  34566777888874

>KOG1272|consensus

Probab=99.58  E-value=2.5e-14  Score=126.38  Aligned_cols=258  Identities=16%  Similarity=0.247  Sum_probs=186.3

Q ss_pred             eEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce
Q psy13076        133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV  212 (423)
Q Consensus       133 ~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (423)
                      .-..+.|+.+|++|+.|+..|.+-..|..++.......   ....|.++.|-.+.++++++-   ..+..+++ ..|..+
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~---v~Etv~Dv~~LHneq~~AVAQ---K~y~yvYD-~~GtEl  203 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN---VMETVRDVTFLHNEQFFAVAQ---KKYVYVYD-NNGTEL  203 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeee---hhhhhhhhhhhcchHHHHhhh---hceEEEec-CCCcEE
Confidence            34568899999999999999999999988776543322   235688999998888877753   33444443 345555


Q ss_pred             ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECC
Q psy13076        213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA  292 (423)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~  292 (423)
                      +-++.+. .+..+.|-|.. |+|++++..|.+..-|....++...+......+..++-+|-+..+-.|...|+|-+|...
T Consensus       204 HClk~~~-~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~  281 (545)
T KOG1272|consen  204 HCLKRHI-RVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN  281 (545)
T ss_pred             eehhhcC-chhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC
Confidence            5555443 56777888754 678999999999999988777665555556677788889988899999999999999998


Q ss_pred             CccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCc
Q psy13076        293 SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGF  372 (423)
Q Consensus       293 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  372 (423)
                      +.+.+..+.  -|.+.|.++++.++|+|++|++.|..++|||++....+.++....+  ...+++  +...+++++....
T Consensus       282 skePLvKiL--cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~--a~~ls~--SqkglLA~~~G~~  355 (545)
T KOG1272|consen  282 SKEPLVKIL--CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP--ASNLSL--SQKGLLALSYGDH  355 (545)
T ss_pred             CcchHHHHH--hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCC--cccccc--ccccceeeecCCe
Confidence            888776653  5899999999999999999999999999999998776665543222  222333  3445667777777


Q ss_pred             EEEEecCCC----CCceEEeccCCCceeEEEecCCCC
Q psy13076        373 ISYLDVNNP----STPIRVIKGHNKPITALALSPDRG  405 (423)
Q Consensus       373 i~~~~~~~~----~~~~~~~~~h~~~v~~i~~sp~~~  405 (423)
                      +.+|.-.-.    ....+.-.-..++|.++.|.|-.-
T Consensus       356 v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED  392 (545)
T KOG1272|consen  356 VQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED  392 (545)
T ss_pred             eeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence            888842211    111111112234899999999543

>KOG0644|consensus

Probab=99.58  E-value=1.3e-14  Score=136.63  Aligned_cols=271  Identities=16%  Similarity=0.192  Sum_probs=192.8

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      ||++++.-|.|+++++.|-.+.||..++ ..+...++||.+.|+.++.+.+..+++++|.|..|++|.+.++..+..+ .
T Consensus       194 yca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL-r  271 (1113)
T KOG0644|consen  194 YCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL-R  271 (1113)
T ss_pred             eeeeeccccceEeecCccceeeeeeccc-hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH-h
Confidence            6666666799999999999999999877 4556699999999999999999999999999999999999998766555 3


Q ss_pred             CCCCCceEEeeCCCCCeEEEecCCeEEEEecC-CC-----cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcC
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE-NP-----AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV  161 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~-----~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~  161 (423)
                      .+.|...++.++|..   ..+....+.+|+.. .+     ...+.  ....-+-++.|-..+.-++|++.|+.-+.|.+.
T Consensus       272 ghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~--~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~  346 (1113)
T KOG0644|consen  272 GHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKF--TEKDLVDSILFENNGDRFLTGSRDGEARNHEFE  346 (1113)
T ss_pred             ccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCc--ccccceeeeeccccccccccccCCcccccchhh
Confidence            456777788888754   22346788999876 11     11111  112456677888889999999999999999875


Q ss_pred             CCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC
Q psy13076        162 NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED  241 (423)
Q Consensus       162 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d  241 (423)
                      .....-        ..+.-+.++.+.....+ ..-......+|...++...+.+.+|..++..+.++|-++.+..+++.|
T Consensus       347 ~l~~~~--------~~lif~t~ssd~~~~~~-~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~d  417 (1113)
T KOG0644|consen  347 QLAWRS--------NLLIFVTRSSDLSSIVV-TARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYD  417 (1113)
T ss_pred             Hhhhhc--------cceEEEeccccccccce-eeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCC
Confidence            322110        00011111212221111 111222334566667777888889999999999999999888899999


Q ss_pred             CeEEEEcCCCceeee-eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc
Q psy13076        242 NTIAVFEGPPFKFKM-TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD  295 (423)
Q Consensus       242 ~~i~~~~~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~  295 (423)
                      |...+||........ ...+|. .+...+||+||..++....=|.+.|.....++
T Consensus       418 gst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  418 GSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             CceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            999999965443222 223443 35556899999998888777889888754443

>KOG2394|consensus

Probab=99.57  E-value=6e-13  Score=119.79  Aligned_cols=187  Identities=20%  Similarity=0.273  Sum_probs=129.1

Q ss_pred             cceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC
Q psy13076        131 SCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG  209 (423)
Q Consensus       131 ~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~  209 (423)
                      +..|++++|-| +...++.+-.+|.+.+||.+.....        ..+  +-...+++..+.+.....        ....
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~--------t~p--~~~~~k~~~~f~i~t~ks--------k~~r  280 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA--------TAP--SYQALKDGDQFAILTSKS--------KKTR  280 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccC--------CCC--cccccCCCCeeEEeeeec--------cccC
Confidence            37899999998 4456666778999999986321100        000  111122333333211100        0001


Q ss_pred             cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEE
Q psy13076        210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLY  289 (423)
Q Consensus       210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vw  289 (423)
                      ..+.....-...|+..+|+|++.+ +|+-++||.+++|+.....+.-..+.......|++|||||+|+++|+.|--|.||
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw  359 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW  359 (636)
T ss_pred             CccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence            122222222337889999998886 8999999999999977666555555556678999999999999999999999999


Q ss_pred             ECCCccceecccccccCCCeEEEEECCC-----------------------------------C-------------CeE
Q psy13076        290 DGASADLVSELGNPAHKGGVYAVAWKPD-----------------------------------G-------------TQL  321 (423)
Q Consensus       290 d~~~~~~~~~~~~~~~~~~i~~l~~~~~-----------------------------------~-------------~~l  321 (423)
                      .+..++++..-  ++|+.+|..|+|+|-                                   +             -.|
T Consensus       360 Sf~erRVVARG--qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRf  437 (636)
T KOG2394|consen  360 SFEERRVVARG--QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRF  437 (636)
T ss_pred             EeccceEEEec--cccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEe
Confidence            99988877654  589999999999830                                   1             147


Q ss_pred             EEEeCCCcEEEEecCCc
Q psy13076        322 LTASGDKTCKLWDIETK  338 (423)
Q Consensus       322 ~s~s~d~~i~iwd~~~~  338 (423)
                      .+.+.|-.+.+||+..-
T Consensus       438 GSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  438 GSVGQDTQLCLWDLTED  454 (636)
T ss_pred             ecccccceEEEEecchh
Confidence            78899999999998754

>KOG3881|consensus

Probab=99.56  E-value=7e-13  Score=114.97  Aligned_cols=259  Identities=13%  Similarity=0.185  Sum_probs=170.8

Q ss_pred             ccCceeEEEEeCCCC--eEEEecCCCceEEeecCCcceeecccCC----CCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076         46 HNKPITALALSPDRG--TVFTGSHDGFITRWNAKTEYIFATLPRT----QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE  119 (423)
Q Consensus        46 h~~~V~~l~~~~~~~--~l~sg~~D~~i~vW~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  119 (423)
                      -...|.+++|..+++  .+...+.|..+....++-..+...+...    ....++.=---.+|.++.+.+.+.+.+|..+
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence            456788889987654  4555557777777776654443332100    0000110001135566667777888999888


Q ss_pred             CCc-----ccccccCCcceEEEEEECC-CCCEEEEEccC--CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEE
Q psy13076        120 NPA-----ISDIYTEHSCAVNVAKYSP-SGFYIASGDIS--GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMV  191 (423)
Q Consensus       120 ~~~-----~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~  191 (423)
                      .+.     +... ..+ ..+..++-+| +..++|+|+..  ..+++||++..++++..+-.            |+...  
T Consensus       134 ~~d~hss~l~~l-a~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv------------pnD~L--  197 (412)
T KOG3881|consen  134 SGDLHSSKLIKL-ATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV------------PNDRL--  197 (412)
T ss_pred             CCccccccceee-ecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC------------CCccc--
Confidence            443     2222 222 3455566566 45566779998  88999999877555432211            11110  


Q ss_pred             EEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecC-CCeeEEEEeCCCeEEEEcCCCce-eeeeccccccCeEEEE
Q psy13076        192 VVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS-RPFRIITGSEDNTIAVFEGPPFK-FKMTKQEHSRFVQAVR  269 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~s~d~~i~~~~~~~~~-~~~~~~~~~~~i~~l~  269 (423)
                            +...-+|                 ++.+.|-+. .++.+++++.-+.+++||..+.. ....+.-...+++++.
T Consensus       198 ------~LrVPvW-----------------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~  254 (412)
T KOG3881|consen  198 ------GLRVPVW-----------------ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG  254 (412)
T ss_pred             ------cceeeee-----------------eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence                  0111122                 233334332 24679999999999999976543 3344445567899999


Q ss_pred             ECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeee
Q psy13076        270 YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       270 ~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~  344 (423)
                      ..|+|.++.+|..-|.+..||.+.++..... ..+..+.|+++..+|.+++|++++-|+.+||+|+++.+++...
T Consensus       255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv  328 (412)
T KOG3881|consen  255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG-LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV  328 (412)
T ss_pred             ecCCCcEEEEecccchhheecccCceeeccc-cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence            9999999999999999999999998876552 1457899999999999999999999999999999997766543

>KOG1334|consensus

Probab=99.56  E-value=1.6e-13  Score=122.09  Aligned_cols=280  Identities=19%  Similarity=0.199  Sum_probs=189.5

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCC--CCeEEEecCCCceEEeecC-CcceeecccCCCCC
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD--RGTVFTGSHDGFITRWNAK-TEYIFATLPRTQRG   91 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~l~sg~~D~~i~vW~~~-~~~~~~~~~~~~~~   91 (423)
                      .|+.|+++|.|..|.+||+........---||...|....|-|.  .+.+++++.||.+|+=.+. ++++..        
T Consensus       153 ~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~--------  224 (559)
T KOG1334|consen  153 RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVEN--------  224 (559)
T ss_pred             cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceec--------
Confidence            79999999999999999997644444333479999999999884  5679999999999885432 221110        


Q ss_pred             CceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEE--
Q psy13076         92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILK--  168 (423)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~--  168 (423)
                                                      .+.+..|.+.|+.++.-| +..-|.|++.|+.+.=.|+........  
T Consensus       225 --------------------------------t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~  272 (559)
T KOG1334|consen  225 --------------------------------TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV  272 (559)
T ss_pred             --------------------------------ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee
Confidence                                            123346888999999988 456789999999999888765432111  


Q ss_pred             eeecCCC--CCeeEEEECCCCCeEEEEEcCCceeeEEEeecC-------C----cceeccc-CCCcceeEEEEecCCCee
Q psy13076        169 NEFHPIG--GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-------G----TSVGEIS-GQSKPINSCDFKPSRPFR  234 (423)
Q Consensus       169 ~~~~~~~--~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~-~~~~~i~~~~~~~~~~~~  234 (423)
                      .......  -...+++..|-..+.+.++.. +.+.++++...       +    .+...+. ...-.|++++|+.++.. 
T Consensus       273 cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~-dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-  350 (559)
T KOG1334|consen  273 CREADEKERVGLYTIAVDPRNTNEFAVGGS-DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-  350 (559)
T ss_pred             eeccCCccceeeeeEecCCCCccccccCCh-hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-
Confidence            1111111  134578888877655554432 22334433211       1    0011111 22345889999977765 


Q ss_pred             EEEEeCCCeEEEEcCC--C-----------ceeeeeccccccC--eEEEE-ECCCCCEEEEEEecCeEEEEECCCcccee
Q psy13076        235 IITGSEDNTIAVFEGP--P-----------FKFKMTKQEHSRF--VQAVR-YSPSGSHFASAGFDGKVFLYDGASADLVS  298 (423)
Q Consensus       235 ~~s~s~d~~i~~~~~~--~-----------~~~~~~~~~~~~~--i~~l~-~s~~g~~l~s~s~dg~i~vwd~~~~~~~~  298 (423)
                      ++++-.|-.|++|.-.  .           ......+++|.+.  |..+- |-|...|+++||.-|.|.+|+.++++.+.
T Consensus       351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~  430 (559)
T KOG1334|consen  351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR  430 (559)
T ss_pred             eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence            4556677788888411  0           0112225566532  44553 56888999999999999999999999887


Q ss_pred             cccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        299 ELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       299 ~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      -+...  ...|.||--+|--..||+++-|..||||-..+.
T Consensus       431 ~MegD--r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  431 FMEGD--RHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             Hhhcc--cceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            77543  348999999999999999999999999987544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=6.6e-13  Score=110.93  Aligned_cols=110  Identities=28%  Similarity=0.496  Sum_probs=82.7

Q ss_pred             ccCeEEEEECCCCCEEEEE--EecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC---CcEEEEecC
Q psy13076        262 SRFVQAVRYSPSGSHFASA--GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD---KTCKLWDIE  336 (423)
Q Consensus       262 ~~~i~~l~~s~~g~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d---~~i~iwd~~  336 (423)
                      ...|..++|+|+|+.||..  ..++.|.+||.+ ++.+..+.    ...+..+.|+|+|++|++++.+   |.+.+||.+
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            3469999999999986554  457799999986 55555552    4566789999999999998754   569999998


Q ss_pred             CcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecC----
Q psy13076        337 TKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH----  412 (423)
Q Consensus       337 ~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~----  412 (423)
                      +.+.+.++                                             .| ..++.++|+|||++|++++.    
T Consensus       134 ~~~~i~~~---------------------------------------------~~-~~~t~~~WsPdGr~~~ta~t~~r~  167 (194)
T PF08662_consen  134 KKKKISTF---------------------------------------------EH-SDATDVEWSPDGRYLATATTSPRL  167 (194)
T ss_pred             CCEEeecc---------------------------------------------cc-CcEEEEEEcCCCCEEEEEEeccce
Confidence            65543221                                             12 23688999999999988764    


Q ss_pred             --CCcEEEeeCC
Q psy13076        413 --DGFITRWNAK  422 (423)
Q Consensus       413 --D~~i~~W~~~  422 (423)
                        |..++||+..
T Consensus       168 ~~dng~~Iw~~~  179 (194)
T PF08662_consen  168 RVDNGFKIWSFQ  179 (194)
T ss_pred             eccccEEEEEec
Confidence              7888999853

>KOG2321|consensus

Probab=99.55  E-value=2.9e-12  Score=116.33  Aligned_cols=280  Identities=16%  Similarity=0.191  Sum_probs=168.3

Q ss_pred             CCcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076        129 EHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      +|...-+.+..+|||+|+ |||-+.-.|++||+.+...  +.+-+.....|.-.-.+-|-..++....++.  ..+. ..
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~--IefH-ak  123 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRT--IEFH-AK  123 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCce--eeeh-hh
Confidence            566777889999999987 5677889999999875432  2222211222322222222221221111110  0000 00


Q ss_pred             CCcceecccCCCcceeEEEEe-cCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeE
Q psy13076        208 TGTSVGEISGQSKPINSCDFK-PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV  286 (423)
Q Consensus       208 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i  286 (423)
                      .|..- .+ .-...-..+.++ |++.  ++.++....++-+++....+...+......++++..++...+|++|+.||.|
T Consensus       124 ~G~hy-~~-RIP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V  199 (703)
T KOG2321|consen  124 YGRHY-RT-RIPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV  199 (703)
T ss_pred             cCeee-ee-ecCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence            00000 00 001111223333 2333  3333444456666666666666666666789999999999999999999999


Q ss_pred             EEEECCCccceeccccc----ccCC-----CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEE
Q psy13076        287 FLYDGASADLVSELGNP----AHKG-----GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSC  357 (423)
Q Consensus       287 ~vwd~~~~~~~~~~~~~----~~~~-----~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~  357 (423)
                      ..||.+.......+...    .|.+     .|+++.|+.+|-.+++|..+|.+.|||++..+.+..-.+........+..
T Consensus       200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~  279 (703)
T KOG2321|consen  200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW  279 (703)
T ss_pred             EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence            99999877665554321    2333     39999999999999999999999999999876543332222222222222


Q ss_pred             EecC-cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEe
Q psy13076        358 LWQG-DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW  419 (423)
Q Consensus       358 ~~~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W  419 (423)
                      ...+ +.-+.......+++||-.++........  +..++++++-|++.+++++-.+..+..+
T Consensus       280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             cccCCCceEEecchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeE
Confidence            2222 2233333455789999888765433322  3459999999999999999888766543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=2.7e-12  Score=121.95  Aligned_cols=236  Identities=17%  Similarity=0.192  Sum_probs=144.7

Q ss_pred             ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCC---CceEEeecCCcceeecccCCCCCCceEEeeCCCC
Q psy13076         26 GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD---GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG  102 (423)
Q Consensus        26 g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D---~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (423)
                      ..|++||...  ...+.+..|..++.+.+|+|+++.|+..+.+   ..|.+||+.++.....                  
T Consensus       184 ~~l~i~D~~g--~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l------------------  243 (433)
T PRK04922        184 YALQVADSDG--YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV------------------  243 (433)
T ss_pred             EEEEEECCCC--CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe------------------
Confidence            4689999753  3344566778899999999999988877633   4688888876532110                  


Q ss_pred             CeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCC--cEEEEEcCCCceeEEeeecCCCCCee
Q psy13076        103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISG--KVRIWDTVNKEHILKNEFHPIGGPIK  179 (423)
Q Consensus       103 ~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~v~  179 (423)
                                               ..+.......+|+|||+.++ +.+.++  .|.+||+.+++...   .........
T Consensus       244 -------------------------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~---lt~~~~~~~  295 (433)
T PRK04922        244 -------------------------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR---LTNHFGIDT  295 (433)
T ss_pred             -------------------------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE---CccCCCCcc
Confidence                                     00111223568999998775 445555  58889987765322   112223345


Q ss_pred             EEEECCCCCeEEEEEcCCceeeEEEeec--CCcceecccCCCcceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCceee
Q psy13076        180 DIAWSPDNQRMVVVGEGRERFGHVFMSE--TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFK  255 (423)
Q Consensus       180 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~~~~  255 (423)
                      ..+|+|||+.++..+..... ..++..+  .+. ...+..........+|+|++..++++...++  .|.+|+.......
T Consensus       296 ~~~~spDG~~l~f~sd~~g~-~~iy~~dl~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        296 EPTWAPDGKSIYFTSDRGGR-PQIYRVAASGGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             ceEECCCCCEEEEEECCCCC-ceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            78999999999887653322 2333332  332 3333323333456899999987555544333  5888886554433


Q ss_pred             eeccccccCeEEEEECCCCCEEEEEEec---CeEEEEECCCccceecccccccCCCeEEEEECC
Q psy13076        256 MTKQEHSRFVQAVRYSPSGSHFASAGFD---GKVFLYDGASADLVSELGNPAHKGGVYAVAWKP  316 (423)
Q Consensus       256 ~~~~~~~~~i~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~  316 (423)
                      . +. +........|+|||++++..+.+   +.|.+++... .....+.  .+.+.+...+|+|
T Consensus       374 ~-Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~--~~~g~~~~p~wsp  432 (433)
T PRK04922        374 T-LT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLV--SADGEVREPAWSP  432 (433)
T ss_pred             E-CC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcc--cCCCCCCCCccCC
Confidence            2 21 11233457899999988777753   3577888743 3344443  2445667788887

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=9.2e-12  Score=118.46  Aligned_cols=237  Identities=14%  Similarity=0.167  Sum_probs=144.1

Q ss_pred             ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecC---CCceEEeecCCcceeecccCCCCCCceEEeeCCCC
Q psy13076         26 GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH---DGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG  102 (423)
Q Consensus        26 g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~---D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (423)
                      ..|+++|.+  ....+.+..|.+++.+.+|+|||+.|+..+.   +..|.+||+.++....                   
T Consensus       182 ~~l~~~d~d--g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------------------  240 (435)
T PRK05137        182 KRLAIMDQD--GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------------------  240 (435)
T ss_pred             eEEEEECCC--CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-------------------
Confidence            478888875  3344567788889999999999998877653   4679999987653211                   


Q ss_pred             CeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCc--EEEEEcCCCceeEEeeecCCCCCee
Q psy13076        103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGK--VRIWDTVNKEHILKNEFHPIGGPIK  179 (423)
Q Consensus       103 ~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~v~  179 (423)
                                              +..+...+...+|+|||+.++ +.+.++.  |.+||+.+++...   +........
T Consensus       241 ------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~---Lt~~~~~~~  293 (435)
T PRK05137        241 ------------------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR---LTDSPAIDT  293 (435)
T ss_pred             ------------------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE---ccCCCCccC
Confidence                                    111223445678999998775 5555655  6666876654321   222233456


Q ss_pred             EEEECCCCCeEEEEEcCCceeeEEEeec-CCcceecccCCCcceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCceeee
Q psy13076        180 DIAWSPDNQRMVVVGEGRERFGHVFMSE-TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFKM  256 (423)
Q Consensus       180 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~~~~~  256 (423)
                      ...|+|||+.++..+..... ..++..+ .+.....+......+....|+|++..++++....+  .|.+++........
T Consensus       294 ~~~~spDG~~i~f~s~~~g~-~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~  372 (435)
T PRK05137        294 SPSYSPDGSQIVFESDRSGS-PQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI  372 (435)
T ss_pred             ceeEcCCCCEEEEEECCCCC-CeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe
Confidence            78999999999887653321 1233222 22333344333344566789999987555543333  57777753322221


Q ss_pred             eccccccCeEEEEECCCCCEEEEEEec------CeEEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAGFD------GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD  317 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~  317 (423)
                       +.. ...+..+.|+|||++|+..+.+      ..+.+.|+..+.. ..+..   .+.+...+|+|-
T Consensus       373 -lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~---~~~~~~p~Wsp~  433 (435)
T PRK05137        373 -LTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT---PGDASDPAWSPL  433 (435)
T ss_pred             -ccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC---CCCccCcccCCC
Confidence             111 1235678999999988776543      2577788755443 33332   234566778763

>KOG1310|consensus

Probab=99.53  E-value=3.5e-13  Score=121.52  Aligned_cols=170  Identities=22%  Similarity=0.315  Sum_probs=120.7

Q ss_pred             cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        122 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       122 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                      .+.+.++||++.|+++.|+.+|.+|+||+.|-.+.|||.-..+.+....                               
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-------------------------------   89 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-------------------------------   89 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-------------------------------
Confidence            3456899999999999999999999999999999999975433221111                               


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecC-CCeeEEEEeCCCeEEEEcCCCce----------eeeeccccccCeEEEEE
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPS-RPFRIITGSEDNTIAVFEGPPFK----------FKMTKQEHSRFVQAVRY  270 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~s~d~~i~~~~~~~~~----------~~~~~~~~~~~i~~l~~  270 (423)
                                    .+|...|.++.|-|. ++.++++|+.|..|++||....+          ...-...|...|..++.
T Consensus        90 --------------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~  155 (758)
T KOG1310|consen   90 --------------TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIAT  155 (758)
T ss_pred             --------------cccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheec
Confidence                          134445555555553 33457788888888888864311          12234567778888999


Q ss_pred             CCCC-CEEEEEEecCeEEEEECCCcccee-------cccc-cccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecC
Q psy13076        271 SPSG-SHFASAGFDGKVFLYDGASADLVS-------ELGN-PAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       271 s~~g-~~l~s~s~dg~i~vwd~~~~~~~~-------~~~~-~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~  336 (423)
                      .|++ ..+.+++.||.|+-+|++....-.       .+.. ....-...++..+|.. .+|+.|+.|-..|+||.+
T Consensus       156 ~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  156 APNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             CCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            9999 579999999999999987633211       1100 0112345789999954 688999999999999964

>KOG3881|consensus

Probab=99.52  E-value=1.7e-12  Score=112.56  Aligned_cols=200  Identities=14%  Similarity=0.146  Sum_probs=142.9

Q ss_pred             CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce----eeeeccccccCeEEEEECCCCCEE-EEEEec--CeEEEEEC
Q psy13076        219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHF-ASAGFD--GKVFLYDG  291 (423)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l-~s~s~d--g~i~vwd~  291 (423)
                      ..+|..+.....   .+++|-.+|.+.+|..+..-    ....+..+ ..+..+.-+|.-+++ ++|+..  ..+.+||+
T Consensus       105 ~~~I~gl~~~dg---~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl  180 (412)
T KOG3881|consen  105 TKSIKGLKLADG---TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDL  180 (412)
T ss_pred             cccccchhhcCC---EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeec
Confidence            344544444322   47888999999999754111    01111111 234455556665554 558888  78999999


Q ss_pred             CCccceecccccc-------cCCCeEEEEECCC--CCeEEEEeCCCcEEEEecCCcce-eeeeeeCceeEeeEEEEEecC
Q psy13076        292 ASADLVSELGNPA-------HKGGVYAVAWKPD--GTQLLTASGDKTCKLWDIETKSA-VSEFLMGNQVEDQQVSCLWQG  361 (423)
Q Consensus       292 ~~~~~~~~~~~~~-------~~~~i~~l~~~~~--~~~l~s~s~d~~i~iwd~~~~~~-i~~~~~~~~~~~~~~~~~~~g  361 (423)
                      .+.+.+..-.+..       -.-+++++.|-|.  ...|++++.-+.+|+||.+.+.. +.++... ......+...|+|
T Consensus       181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p~g  259 (412)
T KOG3881|consen  181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTPSG  259 (412)
T ss_pred             ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-cCcceeeeecCCC
Confidence            8886654322211       1124678899887  88999999999999999986543 4444322 2223445566899


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       362 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      .++.+|...+.+..+|.+........+.|..+.|++|..+|..++|+++|-|+++||+|++|
T Consensus       260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            99999999999999999997766666889999999999999999999999999999999875

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.2e-11  Score=117.23  Aligned_cols=206  Identities=17%  Similarity=0.228  Sum_probs=130.7

Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC---CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCC
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ  188 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  188 (423)
                      .+.+++.+ +.....+..+...+.+.+|+|||+.++..+.+   ..|.+||+.+++.....   ...+.....+|+|||+
T Consensus       177 ~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        177 QLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWSPDGR  252 (427)
T ss_pred             EEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCCC
Confidence            45555553 33334455677788999999999999877643   45999999877543221   1234456889999999


Q ss_pred             eEEEEEcCCceeeEEEeec-CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc--CCCcee-eeeccccccC
Q psy13076        189 RMVVVGEGRERFGHVFMSE-TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKF-KMTKQEHSRF  264 (423)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~--~~~~~~-~~~~~~~~~~  264 (423)
                      .++........ ..+|..+ .+.....+..+........|+|++..++.++..++...+|.  ...... .....  ...
T Consensus       253 ~la~~~~~~g~-~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~--g~~  329 (427)
T PRK02889        253 TLAVALSRDGN-SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT--GSY  329 (427)
T ss_pred             EEEEEEccCCC-ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC--CCC
Confidence            98765443322 3444433 22334445444444567889999987665655556655654  322222 11222  223


Q ss_pred             eEEEEECCCCCEEEEEEecC---eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCC
Q psy13076        265 VQAVRYSPSGSHFASAGFDG---KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       265 i~~l~~s~~g~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                      ....+|+|+|++++..+.++   .|.+||..+++.. .+..   ........|+|||+.|+.++.++
T Consensus       330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~---~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD---TTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC---CCCccCceECCCCCEEEEEEecC
Confidence            34678999999998877654   6999999877643 3322   12346789999999998877654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.6e-11  Score=114.75  Aligned_cols=238  Identities=13%  Similarity=0.143  Sum_probs=148.6

Q ss_pred             CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc-eeeEEEeecCCcceecccCCCcceeEEEEecCC
Q psy13076        153 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE-RFGHVFMSETGTSVGEISGQSKPINSCDFKPSR  231 (423)
Q Consensus       153 ~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  231 (423)
                      ..|.+||........   +......+.+.+|+|||+.++.+..... ....++....+.. ..+...........|+|++
T Consensus       179 ~~l~~~d~dg~~~~~---lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~~~~~~~~SPDG  254 (429)
T PRK03629        179 YELRVSDYDGYNQFV---VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDG  254 (429)
T ss_pred             eeEEEEcCCCCCCEE---eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCCCcCCeEECCCC
Confidence            468888876543221   1223457889999999999987754322 2233444444432 2222222234467899999


Q ss_pred             CeeEEEEeCCC--eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec-C--eEEEEECCCccceecccccccC
Q psy13076        232 PFRIITGSEDN--TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-G--KVFLYDGASADLVSELGNPAHK  306 (423)
Q Consensus       232 ~~~~~s~s~d~--~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~  306 (423)
                      ..++++.+.++  .|++|+....+.... ..+...+....|+|||+.|+..+.+ +  .|+.+|..+++. ..+..  +.
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~--~~  330 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITW--EG  330 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeec--CC
Confidence            87666655555  588888765444322 2333456789999999988877754 3  455557665543 33322  22


Q ss_pred             CCeEEEEECCCCCeEEEEeCC---CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCc---EEEEecCC
Q psy13076        307 GGVYAVAWKPDGTQLLTASGD---KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGF---ISYLDVNN  380 (423)
Q Consensus       307 ~~i~~l~~~~~~~~l~s~s~d---~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~---i~~~~~~~  380 (423)
                      .......|+|||++|+..+.+   ..|.+||+.+++.. .+...  ........+++|..|+..+.++.   +.++++..
T Consensus       331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            345578999999998876544   35888999877532 22211  12223456689999998887664   55666533


Q ss_pred             CCCceEEeccCCCceeEEEecCC
Q psy13076        381 PSTPIRVIKGHNKPITALALSPD  403 (423)
Q Consensus       381 ~~~~~~~~~~h~~~v~~i~~sp~  403 (423)
                        .....+.+|.+.+...+|+|-
T Consensus       408 --~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        408 --RFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             --CCeEECccCCCCcCCcccCCC
Confidence              234567788899999999983

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=9.3e-12  Score=118.31  Aligned_cols=206  Identities=13%  Similarity=0.124  Sum_probs=129.8

Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC---CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCC
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ  188 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  188 (423)
                      .+.++|.+... ...+..|...+...+|+|||+.++..+.+   ..|.+||+.+++......   ..+...+.+|+|||+
T Consensus       185 ~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~---~~g~~~~~~~SpDG~  260 (433)
T PRK04922        185 ALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS---FRGINGAPSFSPDGR  260 (433)
T ss_pred             EEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc---CCCCccCceECCCCC
Confidence            46777775433 34455677788999999999999987643   469999997765432211   223445789999999


Q ss_pred             eEEEEEcCCc-eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe--EEEEcCCCceeeeeccccccCe
Q psy13076        189 RMVVVGEGRE-RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT--IAVFEGPPFKFKMTKQEHSRFV  265 (423)
Q Consensus       189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~--i~~~~~~~~~~~~~~~~~~~~i  265 (423)
                      .++......+ ....++...++. ...+..+........|+|++..++.+...++.  |++++.......... ......
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~  338 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYN  338 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCc
Confidence            8876543322 223334444443 33444444445678999999875555555554  555565433322111 122334


Q ss_pred             EEEEECCCCCEEEEEEecC---eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        266 QAVRYSPSGSHFASAGFDG---KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       266 ~~l~~s~~g~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      ..++|+|+|++++..+.++   .|.+||..+++.. .+.   +........|+|||++|+..+.+
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt---~~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT---PGSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC---CCCCCCCceECCCCCEEEEEEec
Confidence            5689999999988766443   6999998776643 333   22234567999999988776653

>KOG0974|consensus

Probab=99.51  E-value=3.6e-10  Score=109.81  Aligned_cols=144  Identities=17%  Similarity=0.224  Sum_probs=113.5

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCce
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPI   94 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~   94 (423)
                      +--++++|+--+.|-+|+.....+++ .+.||.+.|+.+.++-+|++++|.|.|.++|+|++++.+......-.+.+..-
T Consensus       144 ~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw  222 (967)
T KOG0974|consen  144 EELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW  222 (967)
T ss_pred             cEEEEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeE
Confidence            56688999999999999998545555 79999999999999999999999999999999999998765522112223333


Q ss_pred             EEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCc-ceEEEEEECCCCCEEEEEccCCcEEEEEcC
Q psy13076         95 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYIASGDISGKVRIWDTV  161 (423)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~-~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~  161 (423)
                      ...+.|. .......+...++|..+...+. .+.+|. ..|+.+...++.-..+|++.|+.+++|+..
T Consensus       223 ~~~~~~n-~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  223 ACCFLPN-RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             EEEeccc-eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            3445555 4444456778999976554444 888887 579999999999999999999999999864

>KOG1409|consensus

Probab=99.51  E-value=1.9e-12  Score=110.57  Aligned_cols=250  Identities=15%  Similarity=0.239  Sum_probs=150.9

Q ss_pred             CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                      .+.+...++||...|+..-.-|-..-+.+.+.|.++|||--.+..+.+....+..+.+++++.+.++...|++.-.....
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv   92 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV   92 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence            45667778899999998888888888999999999999975544443333344556788999999988777664332221


Q ss_pred             eeEE--EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC----ceeeeeccccccCeEEEEECCC
Q psy13076        200 FGHV--FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP----FKFKMTKQEHSRFVQAVRYSPS  273 (423)
Q Consensus       200 ~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~----~~~~~~~~~~~~~i~~l~~s~~  273 (423)
                      ....  .+.+...-.+....|...+..+.|+-.... +++.+.|..+..--.+.    ..+....     ..+.+.+.-.
T Consensus        93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~-----~~t~~~~d~~  166 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFET-----PASALQFDAL  166 (404)
T ss_pred             EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeec-----cCCCCceeeE
Confidence            1111  111222233444567777877777765554 66677776654321110    0011000     0011111111


Q ss_pred             CCEEEEEEecCeEEEEECC--CccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeE
Q psy13076        274 GSHFASAGFDGKVFLYDGA--SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVE  351 (423)
Q Consensus       274 g~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~  351 (423)
                        +...|...|.|.+-...  ....+.++  .+|.+.+.+++|.|..+.|++|..|..+.+||+..++-+.....++...
T Consensus       167 --~~fvGd~~gqvt~lr~~~~~~~~i~~~--~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~k  242 (404)
T KOG1409|consen  167 --YAFVGDHSGQITMLKLEQNGCQLITTF--NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDK  242 (404)
T ss_pred             --EEEecccccceEEEEEeecCCceEEEE--cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhh
Confidence              44555556665543332  23334444  4799999999999999999999999999999997665443322222222


Q ss_pred             eeEEEEEecCcEEEEEeCCCcEEEEecC
Q psy13076        352 DQQVSCLWQGDYLLTVSLSGFISYLDVN  379 (423)
Q Consensus       352 ~~~~~~~~~g~~l~~~~~~~~i~~~~~~  379 (423)
                      .........-..+.+++.||.|.+|+.+
T Consensus       243 V~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  243 VQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             hhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            2222222234556777788888888765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=7.8e-10  Score=101.82  Aligned_cols=269  Identities=17%  Similarity=0.242  Sum_probs=161.5

Q ss_pred             CceEEeec--CCcceeecccCCCCCCceEEeeCCCCCeEEEecC-----CeEEEEecCC--Cccccc--ccCCcceEEEE
Q psy13076         69 GFITRWNA--KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG-----NSVIIRNIEN--PAISDI--YTEHSCAVNVA  137 (423)
Q Consensus        69 ~~i~vW~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~--~~~~~~--~~~h~~~i~~~  137 (423)
                      +.|.++++  +++.+...-.......+-.+..+|+++.+.....     ..+..+.+..  +.+...  ....-.....+
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            67888776  4444322211123344556677888877666533     3666666543  333222  11112234468


Q ss_pred             EECCCCCEEEEEcc-CCcEEEEEcCCCcee-EEe-ee----------cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        138 KYSPSGFYIASGDI-SGKVRIWDTVNKEHI-LKN-EF----------HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       138 ~~sp~~~~l~s~~~-d~~i~vwd~~~~~~~-~~~-~~----------~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      +++|++++++++.. ++++.++++.....+ ... ..          .+......++.|+|+++++++..-+.+.. .++
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v-~~~  171 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV-YVY  171 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE-EEE
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE-EEE
Confidence            89999999999876 799999999763221 111 11          01223467899999999999887666653 344


Q ss_pred             eecCCc-cee---cc-cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC--Cceeee--ecc----c--cccCeEEEE
Q psy13076        205 MSETGT-SVG---EI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP--PFKFKM--TKQ----E--HSRFVQAVR  269 (423)
Q Consensus       205 ~~~~~~-~~~---~~-~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~--~~~~~~--~~~----~--~~~~i~~l~  269 (423)
                      ..+... .+.   .+ .........+.|+|++.+..++.-.++.|.+|+..  ...+..  ...    .  .......++
T Consensus       172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  251 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA  251 (345)
T ss_dssp             EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred             EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence            443332 121   12 23345678899999999877888889999998755  222211  111    1  112577899


Q ss_pred             ECCCCCEEEEEE-ecCeEEEEECC--Cccceecccc-cccCCCeEEEEECCCCCeEEEEe-CCCcEEEEecC--Ccc
Q psy13076        270 YSPSGSHFASAG-FDGKVFLYDGA--SADLVSELGN-PAHKGGVYAVAWKPDGTQLLTAS-GDKTCKLWDIE--TKS  339 (423)
Q Consensus       270 ~s~~g~~l~s~s-~dg~i~vwd~~--~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~s~s-~d~~i~iwd~~--~~~  339 (423)
                      ++|||++|.++. ..+.|.+|++.  ++++ ..+.. .......+.++++|+|++|+++. .++.|.+|++.  ++.
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~  327 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGK  327 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             EecCCCEEEEEeccCCEEEEEEEecCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence            999999887766 46789999983  2332 22211 11233478999999999998876 56789999773  444

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1188|consensus

Probab=99.48  E-value=1.4e-12  Score=111.29  Aligned_cols=189  Identities=12%  Similarity=0.195  Sum_probs=144.0

Q ss_pred             eEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECC--CCCEEEEEEecCeEEEEECCCccceecccccccC-CCeE
Q psy13076        234 RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP--SGSHFASAGFDGKVFLYDGASADLVSELGNPAHK-GGVY  310 (423)
Q Consensus       234 ~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~--~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~i~  310 (423)
                      .++++-..|.+++|+..+.+.......++..++.++|..  ....+.+++.||+|++||.++......+...++. ..-.
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            478888899999999777666666777777788888866  3457899999999999999987776666555555 3445


Q ss_pred             EEEECCCCCeEEEEeC----CCcEEEEecCCcce-eeeeeeCceeEeeEEEEEe-cCcEEEEEeCCCcEEEEecCCCCC-
Q psy13076        311 AVAWKPDGTQLLTASG----DKTCKLWDIETKSA-VSEFLMGNQVEDQQVSCLW-QGDYLLTVSLSGFISYLDVNNPST-  383 (423)
Q Consensus       311 ~l~~~~~~~~l~s~s~----d~~i~iwd~~~~~~-i~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~i~~~~~~~~~~-  383 (423)
                      +++...+++.+++|..    |-.|.+||++..+. +..+...+.....++.+.| +.+.|++||.||.+-++|+..... 
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee  201 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE  201 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence            6666667777777643    45699999988766 6666666555555666666 557889999999999999976432 


Q ss_pred             -ceEEeccCCCceeEEEecCCC-CeEEEecCCCcEEEeeCC
Q psy13076        384 -PIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       384 -~~~~~~~h~~~v~~i~~sp~~-~~l~s~s~D~~i~~W~~~  422 (423)
                       ++.....|...|-.+.|..++ +.|.+-+...+..+|+++
T Consensus       202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence             233445677889999999877 458888999999999875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.47  E-value=5.9e-10  Score=113.54  Aligned_cols=352  Identities=16%  Similarity=0.214  Sum_probs=201.2

Q ss_pred             ceeeEEEE--eCCEEEEEeccceEEEE----eccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc
Q psy13076          7 DQQVSCLW--QGDYLLTVSLSGFISYL----DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY   80 (423)
Q Consensus         7 ~~~~~~~~--~~~~~~~~~~dg~i~~~----d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~   80 (423)
                      +..+++.|  |..-+..+..+|.|.+.    +...  ..+-....-...|.+++||||+.+|+-...++++.+-+. +..
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd  152 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFD  152 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cce
Confidence            57788887  78888889999999999    4432  223222334679999999999999988888888877542 222


Q ss_pred             eeeccc--CC--CCCCceEEeeCCCCCeEEEecCCeEE--EEecCCC-cccccccCCcceEEEEEECCCCCEEEEEcc--
Q psy13076         81 IFATLP--RT--QRGQPIVLGGDPKGKNFLYTNGNSVI--IRNIENP-AISDIYTEHSCAVNVAKYSPSGFYIASGDI--  151 (423)
Q Consensus        81 ~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~--  151 (423)
                      .+...+  ..  ...+.+.++|.....+|=.+.+....  ..+..-+ .-...+. +.+.-..+.|..||+|+|..+.  
T Consensus       153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence            222211  11  22356666666554444333332211  1222211 1112233 4445567899999999998775  


Q ss_pred             -C---CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEE
Q psy13076        152 -S---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF  227 (423)
Q Consensus       152 -d---~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  227 (423)
                       .   ..+|||+-+ +.  +........+--.+++|.|.|..+++......                             
T Consensus       232 ~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~-----------------------------  279 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRPSGNLIASSQRLPD-----------------------------  279 (928)
T ss_pred             CCCceeEEEEECCC-ce--EEeccccCCCccCCccCCCCCCEEEEEEEcCC-----------------------------
Confidence             2   578999854 32  22222222233346889999887765431110                             


Q ss_pred             ecCCCeeEEEEeCCCeEEEEcCCC---ceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc-e-ecccc
Q psy13076        228 KPSRPFRIITGSEDNTIAVFEGPP---FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL-V-SELGN  302 (423)
Q Consensus       228 ~~~~~~~~~s~s~d~~i~~~~~~~---~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~-~-~~~~~  302 (423)
                                   ...|..|+-+.   ..+..........|..++|++|+..||.--.|. |.+|-.....- + +++..
T Consensus       280 -------------~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~  345 (928)
T PF04762_consen  280 -------------RHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF  345 (928)
T ss_pred             -------------CcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc
Confidence                         11223333211   122222333445678999999999999876555 99998766542 1 12221


Q ss_pred             cccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCC-
Q psy13076        303 PAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN-  380 (423)
Q Consensus       303 ~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~-  380 (423)
                      . ....+..+.|+|.. ..|...+.++.+..+++.-.-..     +.       ...+++...++.-....+++-..+. 
T Consensus       346 ~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~-----s~-------~~~~~D~g~vaVIDG~~lllTpf~~a  412 (928)
T PF04762_consen  346 S-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR-----SP-------GSSPNDNGTVAVIDGNKLLLTPFRRA  412 (928)
T ss_pred             c-CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe-----cC-------CCCccCceEEEEEeCCeEEEeccccc
Confidence            1 12334459999954 45777777677777665321100     00       0011122222222333444443332 


Q ss_pred             --CCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        381 --PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       381 --~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                        |+.+...--....+|++++|++++..++.-..||.|.+|..
T Consensus       413 ~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  413 VVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW  455 (928)
T ss_pred             CCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence              11222222234678999999999988999999999999874

>KOG1409|consensus

Probab=99.47  E-value=9.1e-12  Score=106.43  Aligned_cols=247  Identities=15%  Similarity=0.214  Sum_probs=155.9

Q ss_pred             ceeecccccCceeEEEEeCCCCeEEEecCCCceEEee-cCCcceeecccCCCCCCceEEeeCCCCCeEEEecCC-eEEEE
Q psy13076         39 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN-AKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGN-SVIIR  116 (423)
Q Consensus        39 ~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~  116 (423)
                      ....++||.+.|+....-|..+-+++.+.|.++|||- .+.++--..+.+.-.....++...++-..+++...+ .+.-.
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            3456899999999888888888899999999999994 333322222222222333344555544444433221 22211


Q ss_pred             ----ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEE
Q psy13076        117 ----NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV  192 (423)
Q Consensus       117 ----~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~  192 (423)
                          +.+.--..+.+..|.+.|..+-|+-..+.+++.+.|..+.--=.+.+..+-...+..   +..++.|.-.   .+.
T Consensus        96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~---~~t~~~~d~~---~~f  169 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET---PASALQFDAL---YAF  169 (404)
T ss_pred             EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec---cCCCCceeeE---EEE
Confidence                223334456678899999999999999999999998877533233322211111110   0111111110   111


Q ss_pred             EEcC-CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce-eeeeccccccCeEEEEE
Q psy13076        193 VGEG-RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-FKMTKQEHSRFVQAVRY  270 (423)
Q Consensus       193 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~-~~~~~~~~~~~i~~l~~  270 (423)
                      +++. ....+.-...+.-..+..+.+|..++.++.|.|.+. ++.+|..|..+.+||....+ ....+..|.+.+..++.
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~  248 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY  248 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence            1111 111122233334455667889999999999998765 58999999999999976544 34567788888888888


Q ss_pred             CCCCCEEEEEEecCeEEEEECC
Q psy13076        271 SPSGSHFASAGFDGKVFLYDGA  292 (423)
Q Consensus       271 s~~g~~l~s~s~dg~i~vwd~~  292 (423)
                      -+--+.+.+++.||.|.+|+++
T Consensus       249 ~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  249 AQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             hhhheeeeeccCCCeEEEEecc
Confidence            8888899999999999999854

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=5.1e-11  Score=113.41  Aligned_cols=216  Identities=14%  Similarity=0.130  Sum_probs=137.2

Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc---CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCC
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI---SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ  188 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  188 (423)
                      .+.+++.+. .....+..|...+...+|+|||+.|+..+.   +..|.+||+.+++...   +....+.+...+|+|||+
T Consensus       183 ~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        183 RLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---VGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             EEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---eecCCCcccCcEECCCCC
Confidence            566666644 334456678888999999999999988764   4689999998765432   222335567889999999


Q ss_pred             eEEEEEcCCceeeEEE--eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCceeeeeccccccC
Q psy13076        189 RMVVVGEGRERFGHVF--MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFKMTKQEHSRF  264 (423)
Q Consensus       189 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~~~~~~~~~~~~~  264 (423)
                      .++........ ..++  +.+.+ ....+..+........|+|++..++.+...++  .|++++........ +......
T Consensus       259 ~la~~~~~~g~-~~Iy~~d~~~~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~  335 (435)
T PRK05137        259 KVVMSLSQGGN-TDIYTMDLRSG-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGR  335 (435)
T ss_pred             EEEEEEecCCC-ceEEEEECCCC-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCc
Confidence            88765543222 2333  33333 33445545555667899999987555544444  57777755433222 1122334


Q ss_pred             eEEEEECCCCCEEEEEEec---CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCC------cEEEEec
Q psy13076        265 VQAVRYSPSGSHFASAGFD---GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK------TCKLWDI  335 (423)
Q Consensus       265 i~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~------~i~iwd~  335 (423)
                      +....|+|+|++|+..+.+   ..|.+||...+. ...+..   ...+..+.|+|||+.|+..+.++      .+.++|+
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            5668899999999877654   368888875543 233321   22466789999999887665432      4556665


Q ss_pred             CCc
Q psy13076        336 ETK  338 (423)
Q Consensus       336 ~~~  338 (423)
                      ..+
T Consensus       412 ~g~  414 (435)
T PRK05137        412 TGR  414 (435)
T ss_pred             CCC
Confidence            443

>KOG2315|consensus

Probab=99.45  E-value=2.3e-10  Score=104.08  Aligned_cols=314  Identities=16%  Similarity=0.219  Sum_probs=190.1

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEE-----ecCC-----CceEEeecCCc
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFT-----GSHD-----GFITRWNAKTE   79 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~s-----g~~D-----~~i~vW~~~~~   79 (423)
                      ++|..+++.+.+.+.+..++|++..... .+-+..  ...+..|.|+|-+.+|.|     -..|     .-+++|+++++
T Consensus        39 v~~~S~~G~lfA~~~~~~v~i~~~~~~~-~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~  115 (566)
T KOG2315|consen   39 VFAYSNNGRLFAYSDNQVVKVFEIATLK-VVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG  115 (566)
T ss_pred             eEEEcCCCcEEEEEcCCeEEEEEccCCc-EEEEec--cceeeeeeecccccccccccccccccCCCCCCCceeeeeeccc
Confidence            4455456666667888999999986533 222222  227889999998888765     2223     34679999985


Q ss_pred             ceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCC--CEEEE-----EccC
Q psy13076         80 YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG--FYIAS-----GDIS  152 (423)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~--~~l~s-----~~~d  152 (423)
                      .....++...+... ...++.+..+.+.-.++.+.++++.+-+. -.-.-|...|+...++|.+  .++|+     .+.-
T Consensus       116 ~~~s~~q~k~Q~~W-~~qfs~dEsl~arlv~nev~f~~~~~f~~-~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP  193 (566)
T KOG2315|consen  116 VQRSQIQKKMQNGW-VPQFSIDESLAARLVSNEVQFYDLGSFKT-IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP  193 (566)
T ss_pred             eehhheehhhhcCc-ccccccchhhhhhhhcceEEEEecCCccc-eeeeeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence            43333321111111 23445555444444567777777665211 1112356778888898863  34443     4556


Q ss_pred             CcEEEEEcCCCce---eEEeeecCCCCCeeEEEECCCCCeEEEEEcC-Cce---------eeEEEeecCCcceecccCCC
Q psy13076        153 GKVRIWDTVNKEH---ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG-RER---------FGHVFMSETGTSVGEISGQS  219 (423)
Q Consensus       153 ~~i~vwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~  219 (423)
                      +.+|||.......   +-...|.. .+. -.+.|++-|.-|++.... -+.         ..++...+ +.....--...
T Consensus       194 a~vri~~~~~~~~~~~~a~ksFFk-adk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~  270 (566)
T KOG2315|consen  194 ASVRIYKYPEEGQHQPVANKSFFK-ADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKE  270 (566)
T ss_pred             cEEEEeccccccccchhhhccccc-cce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCC
Confidence            7899998752211   11111211 122 357888887766665432 121         22333333 22222222346


Q ss_pred             cceeEEEEecCCC-eeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec---CeEEEEECCCcc
Q psy13076        220 KPINSCDFKPSRP-FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD---GKVFLYDGASAD  295 (423)
Q Consensus       220 ~~i~~~~~~~~~~-~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~  295 (423)
                      .+|.++.|+|++. +.++-|-.=-.+.+|+.+... .  ..-...+-+++-|+|.|++++.++.+   |.+.+||..+.+
T Consensus       271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K  347 (566)
T KOG2315|consen  271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-V--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK  347 (566)
T ss_pred             CCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-e--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence            7999999999885 334444445567788754322 2  22233445788999999999998876   689999999988


Q ss_pred             ceecccccccCCCeEEEEECCCCCeEEEEeC------CCcEEEEecCCc
Q psy13076        296 LVSELGNPAHKGGVYAVAWKPDGTQLLTASG------DKTCKLWDIETK  338 (423)
Q Consensus       296 ~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~------d~~i~iwd~~~~  338 (423)
                      ++..+..    ...+-+.|+|||++|+|+..      |+.++||++...
T Consensus       348 ~i~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  348 LIAKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             hcccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            7766532    33466899999999999865      467999998654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=2.2e-09  Score=98.82  Aligned_cols=293  Identities=18%  Similarity=0.316  Sum_probs=178.2

Q ss_pred             EEEEecc----ceEEEEeccCCCCceeecc--cccCceeEEEEeCCCCeEEEecC----CCceEEeecCCc--ce--eec
Q psy13076         19 LLTVSLS----GFISYLDVNNPSTPIRVIK--GHNKPITALALSPDRGTVFTGSH----DGFITRWNAKTE--YI--FAT   84 (423)
Q Consensus        19 ~~~~~~d----g~i~~~d~~~~~~~~~~~~--gh~~~V~~l~~~~~~~~l~sg~~----D~~i~vW~~~~~--~~--~~~   84 (423)
                      ++.|+++    +.|..++++.....+..+.  .-.....-|+++|++++|.+..+    ++.|..|++...  .+  +..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4456776    7999999854444443332  12345567899999999888766    578988887653  32  111


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCC-Cccccc---c----------cCCcceEEEEEECCCCCEEEE
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIEN-PAISDI---Y----------TEHSCAVNVAKYSPSGFYIAS  148 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~-~~~~~~---~----------~~h~~~i~~~~~sp~~~~l~s  148 (423)
                      . ......++.+..+|+++.++.++  +..+.+.+++. +.+...   +          ..-..-.+++.|+|+|+++++
T Consensus        82 ~-~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   82 V-PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             E-EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             e-ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            1 11344567888999999888764  67888888765 433322   1          112245788999999998887


Q ss_pred             Ecc-CCcEEEEEcCCCce-e-EEee-ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec--CCc--ceeccc---C
Q psy13076        149 GDI-SGKVRIWDTVNKEH-I-LKNE-FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE--TGT--SVGEIS---G  217 (423)
Q Consensus       149 ~~~-d~~i~vwd~~~~~~-~-~~~~-~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~---~  217 (423)
                      .+. ...|.+|++..... + .... ........+.+.|+|+++++.++...... ..++...  .+.  .+..+.   .
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~-v~v~~~~~~~g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT-VSVFDYDPSDGSLTEIQTISTLPE  239 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESCET
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc-EEEEeecccCCceeEEEEeeeccc
Confidence            654 45799999876542 1 1111 12334556899999999999888765443 2333333  221  111111   1


Q ss_pred             ---CCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC--c--eeeeeccccccCeEEEEECCCCCEEEEEE-ecCeEEEE
Q psy13076        218 ---QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP--F--KFKMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLY  289 (423)
Q Consensus       218 ---~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~--~--~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vw  289 (423)
                         .......+.++|++.++.++...++.|.+|+...  .  +............+.++++|+|++|+++. .++.|.+|
T Consensus       240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence               1125678899999999778777889999998622  2  22222222344578999999999998887 46688888


Q ss_pred             EC--CCccceecccccccCCCeEEEEE
Q psy13076        290 DG--ASADLVSELGNPAHKGGVYAVAW  314 (423)
Q Consensus       290 d~--~~~~~~~~~~~~~~~~~i~~l~~  314 (423)
                      +.  .+|.+...-. ...-....|+.|
T Consensus       320 ~~d~~tG~l~~~~~-~~~~~~p~ci~f  345 (345)
T PF10282_consen  320 DIDPDTGKLTPVGS-SVPIPSPVCIVF  345 (345)
T ss_dssp             EEETTTTEEEEEEE-EEESSSEEEEEE
T ss_pred             EEeCCCCcEEEecc-cccCCCCEEEeC
Confidence            65  4555332211 112234556655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354|consensus

Probab=99.45  E-value=1.4e-11  Score=105.27  Aligned_cols=277  Identities=16%  Similarity=0.233  Sum_probs=159.3

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCC----ceeeccccc------------CceeEEEEeCCCC--eEEEecCCCce
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPST----PIRVIKGHN------------KPITALALSPDRG--TVFTGSHDGFI   71 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~----~~~~~~gh~------------~~V~~l~~~~~~~--~l~sg~~D~~i   71 (423)
                      |.++..|.+||+|..+|.|-++.-....+    -...++.|.            ..|+.+.|.+++.  .++....|.+|
T Consensus        31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdkti  110 (433)
T KOG1354|consen   31 VEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTI  110 (433)
T ss_pred             EEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcce
Confidence            44455799999999999998886433222    122344443            5788999998754  45666789999


Q ss_pred             EEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC------CCccccccc-CCcceEEEEEECCCCC
Q psy13076         72 TRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE------NPAISDIYT-EHSCAVNVAKYSPSGF  144 (423)
Q Consensus        72 ~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~-~h~~~i~~~~~sp~~~  144 (423)
                      ++|.+........      +-......+|.+.       ..+++--+.      .-.+.+++. .|+.-|+++.++.|++
T Consensus       111 KlWKi~er~~k~~------~~~~~~~~~~~~~-------~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E  177 (433)
T KOG1354|consen  111 KLWKIRERGSKKE------GYNLPEEGPPGTI-------TSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE  177 (433)
T ss_pred             eeeeeeccccccc------cccccccCCCCcc-------ceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence            9998764322110      0000000011110       000000000      011223343 6999999999999999


Q ss_pred             EEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeE
Q psy13076        145 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINS  224 (423)
Q Consensus       145 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  224 (423)
                      .++|++ |=.|.+|+++-..+...           -|..-|..                           +..-..-|++
T Consensus       178 t~lSAD-dLRINLWnlei~d~sFn-----------IVDIKP~n---------------------------mEeLteVITs  218 (433)
T KOG1354|consen  178 TFLSAD-DLRINLWNLEIIDQSFN-----------IVDIKPAN---------------------------MEELTEVITS  218 (433)
T ss_pred             eEeecc-ceeeeeccccccCCcee-----------EEEccccC---------------------------HHHHHHHHhh
Confidence            999886 67799999864332211           11111110                           0000012444


Q ss_pred             EEEecCCCeeEEEEeCCCeEEEEcCCCcee----eee------------ccccccCeEEEEECCCCCEEEEEEecCeEEE
Q psy13076        225 CDFKPSRPFRIITGSEDNTIAVFEGPPFKF----KMT------------KQEHSRFVQAVRYSPSGSHFASAGFDGKVFL  288 (423)
Q Consensus       225 ~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~----~~~------------~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~v  288 (423)
                      ..|+|.....++-++..|+|++.|.+...+    ...            +.+.-..|..+.|++.|+|+++-.+ -+|++
T Consensus       219 aEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~  297 (433)
T KOG1354|consen  219 AEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKL  297 (433)
T ss_pred             hccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEE
Confidence            455555444455556667777776542111    000            1111234778999999999997543 47999


Q ss_pred             EECC-Cccceecccccc----------cCCCe---EEEEECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076        289 YDGA-SADLVSELGNPA----------HKGGV---YAVAWKPDGTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       289 wd~~-~~~~~~~~~~~~----------~~~~i---~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      ||+. ..+.+.+.+...          .+..|   ..++|+.++.+++|||-...+++++...+.
T Consensus       298 wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  298 WDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             EeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            9983 334333332100          12223   468899999999999999999999976553

>KOG1272|consensus

Probab=99.38  E-value=2.6e-12  Score=113.78  Aligned_cols=227  Identities=15%  Similarity=0.172  Sum_probs=160.3

Q ss_pred             EEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCc
Q psy13076         52 ALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS  131 (423)
Q Consensus        52 ~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~  131 (423)
                      .+.++.+|++|+-|+..|.|-.+|..++.+...+..                                           .
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-------------------------------------------~  170 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-------------------------------------------M  170 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeeh-------------------------------------------h
Confidence            477888999999999999999999988766544321                                           1


Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS  211 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      ..|..+.|-.+.+++|.+. ...+.|||-...+.-+..    .-.+|..+.|-|-.-.|  ++.+...+.+..+..+|+.
T Consensus       171 Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtElHClk----~~~~v~rLeFLPyHfLL--~~~~~~G~L~Y~DVS~Gkl  243 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTELHCLK----RHIRVARLEFLPYHFLL--VAASEAGFLKYQDVSTGKL  243 (545)
T ss_pred             hhhhhhhhhcchHHHHhhh-hceEEEecCCCcEEeehh----hcCchhhhcccchhhee--eecccCCceEEEeechhhh
Confidence            1344556666666777664 466788885432211111    12457778888864333  3344455667777788888


Q ss_pred             eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEEC
Q psy13076        212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDG  291 (423)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~  291 (423)
                      +..+......+..+..+|-+. .+-+|...|++.+|...........-.|..+|.++++.|+|.|+++++.|..++|||+
T Consensus       244 Va~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl  322 (545)
T KOG1272|consen  244 VASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL  322 (545)
T ss_pred             hHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence            887777777777788888765 4778899999999985444444556689999999999999999999999999999999


Q ss_pred             CCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEe
Q psy13076        292 ASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD  334 (423)
Q Consensus       292 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd  334 (423)
                      +....+.++..   ......+++|..|- || +|.-..|.||-
T Consensus       323 R~~~ql~t~~t---p~~a~~ls~Sqkgl-LA-~~~G~~v~iw~  360 (545)
T KOG1272|consen  323 RNFYQLHTYRT---PHPASNLSLSQKGL-LA-LSYGDHVQIWK  360 (545)
T ss_pred             ccccccceeec---CCCccccccccccc-ee-eecCCeeeeeh
Confidence            98776655432   23456788887663 33 34445699994

>KOG0974|consensus

Probab=99.37  E-value=2.2e-11  Score=118.05  Aligned_cols=182  Identities=17%  Similarity=0.224  Sum_probs=134.1

Q ss_pred             EEEEeCCCeEEEEcCCCceeeeecccccc----CeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeE
Q psy13076        235 IITGSEDNTIAVFEGPPFKFKMTKQEHSR----FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY  310 (423)
Q Consensus       235 ~~s~s~d~~i~~~~~~~~~~~~~~~~~~~----~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~  310 (423)
                      ++..+.++.+.+|+...............    ...-+.++++.-++++|+.-+.|.+|+....+...  ...+|.+.|.
T Consensus       102 i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~--~l~GHeG~iF  179 (967)
T KOG0974|consen  102 IALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI--RLKGHEGSIF  179 (967)
T ss_pred             EEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc--eecccCCceE
Confidence            66667778888887654333222221111    11223457777799999999999999987333222  2358999999


Q ss_pred             EEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc
Q psy13076        311 AVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG  390 (423)
Q Consensus       311 ~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  390 (423)
                      ++.|+-||+++++.|+|+++|+|++.+.+.......++..+..+..+.++  .+++++.|-+.++|.......  ....+
T Consensus       180 ~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l--~~y~~  255 (967)
T KOG0974|consen  180 SIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQL--EVYDE  255 (967)
T ss_pred             EEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccccee--hhhhh
Confidence            99999999999999999999999999988766333344444444444434  999999999999997655433  35667


Q ss_pred             CCC-ceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        391 HNK-PITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       391 h~~-~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      |.. .|+.++..++..+++|++.|+.+++|+..
T Consensus       256 h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  256 HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             hhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            765 59999999999999999999999999864

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.36  E-value=8.7e-09  Score=92.86  Aligned_cols=281  Identities=13%  Similarity=0.109  Sum_probs=157.9

Q ss_pred             eCCEEEEEecc-----ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecC----------CCceEEeecCCc
Q psy13076         15 QGDYLLTVSLS-----GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH----------DGFITRWNAKTE   79 (423)
Q Consensus        15 ~~~~~~~~~~d-----g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~----------D~~i~vW~~~~~   79 (423)
                      |++++......     +.|.++|..+ .+.+.++..-..|-- + ++||++.|+.+..          +..|.+||.++.
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~-~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~   87 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEA-GRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH   87 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCC-CEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence            55555544443     8999999876 444555543333332 4 9999998776655          889999999998


Q ss_pred             ceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc--CCcEEE
Q psy13076         80 YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI--SGKVRI  157 (423)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~--d~~i~v  157 (423)
                      +....+.....         |                     +.+     .-..-...+++|||++++....  +..+-+
T Consensus        88 ~~~~~i~~p~~---------p---------------------~~~-----~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        88 LPIADIELPEG---------P---------------------RFL-----VGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             cEEeEEccCCC---------c---------------------hhh-----ccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            87766542110         0                     000     0001224567888888887663  578888


Q ss_pred             EEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce-ec--c-cCCCcce-eEEEEec-CC
Q psy13076        158 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV-GE--I-SGQSKPI-NSCDFKP-SR  231 (423)
Q Consensus       158 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~i-~~~~~~~-~~  231 (423)
                      .|+.+++.+.....   ++...-...+ +..+++.+.++..  ..+-....++.. ..  + .....++ ..-.|.+ ++
T Consensus       133 vD~~~~kvv~ei~v---p~~~~vy~t~-e~~~~~~~~Dg~~--~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg  206 (352)
T TIGR02658       133 VDLEGKAFVRMMDV---PDCYHIFPTA-NDTFFMHCRDGSL--AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG  206 (352)
T ss_pred             EECCCCcEEEEEeC---CCCcEEEEec-CCccEEEeecCce--EEEEecCCCceEEeeeeeecCCccccccCCceEcCCC
Confidence            88887765543222   1111111111 1122222222111  111111111110 00  0 0000000 0003445 55


Q ss_pred             CeeEEEEeCCCeEEEEcCCCc-----eeeee--ccc-----cccCeEEEEECCCCCEEEEEE----------ecCeEEEE
Q psy13076        232 PFRIITGSEDNTIAVFEGPPF-----KFKMT--KQE-----HSRFVQAVRYSPSGSHFASAG----------FDGKVFLY  289 (423)
Q Consensus       232 ~~~~~s~s~d~~i~~~~~~~~-----~~~~~--~~~-----~~~~i~~l~~s~~g~~l~s~s----------~dg~i~vw  289 (423)
                      ...+++ . +|.+.+.|....     .....  ...     ....+.-++++|+|+.+..+.          ..+.|.++
T Consensus       207 ~~~~vs-~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi  284 (352)
T TIGR02658       207 RLVWPT-Y-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV  284 (352)
T ss_pred             cEEEEe-c-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence            543333 3 399999884221     11111  110     223345599999999877643          12589999


Q ss_pred             ECCCccceecccccccCCCeEEEEECCCCC-eEEEEe-CCCcEEEEecCCcceeeee
Q psy13076        290 DGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLTAS-GDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       290 d~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~i~~~  344 (423)
                      |.++++.+..+..   ...+..++++||++ +|.+.. .++.|.++|..+++.+++.
T Consensus       285 D~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       285 DAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            9999998887752   34688999999999 777655 6889999999999888775

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.36  E-value=9.1e-09  Score=92.71  Aligned_cols=221  Identities=16%  Similarity=0.106  Sum_probs=123.5

Q ss_pred             CeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc----------CCcEEEEEcCCCceeEEeeecCC-----C
Q psy13076        111 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI----------SGKVRIWDTVNKEHILKNEFHPI-----G  175 (423)
Q Consensus       111 ~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~~~~-----~  175 (423)
                      +.+.+.|.++.+...++..-..+- .+ ++||++.++.+..          +..|.+||..+.+..........     .
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            567777877777666554322222 24 8999998887766          78999999998877654443211     1


Q ss_pred             CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEE-------eCCCeEEEE-
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG-------SEDNTIAVF-  247 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~-------s~d~~i~~~-  247 (423)
                      .....++++|||+++++..........+.+.+.++.+.++..           |++.....++       +.|+..... 
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~~~~v~  173 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGSLAKVG  173 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEEeecCceEEEE
Confidence            123478999999999988766566667788777776666543           2222211111       223322221 


Q ss_pred             -cCCCceeeee--c-cccccCe-EEEEECC-CCCEEEEEEecCeEEEEECCCcc-----ceeccccc-----ccCCCeEE
Q psy13076        248 -EGPPFKFKMT--K-QEHSRFV-QAVRYSP-SGSHFASAGFDGKVFLYDGASAD-----LVSELGNP-----AHKGGVYA  311 (423)
Q Consensus       248 -~~~~~~~~~~--~-~~~~~~i-~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~~-----~~~~~i~~  311 (423)
                       +.........  . .....++ ..-.|.+ +|+++..... |.|.+.|+....     ....+...     -..+...-
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~  252 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ  252 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence             1000000000  0 0000000 0113455 7877766555 999999954322     22222111     12334455


Q ss_pred             EEECCCCCeEEEEeC----------CCcEEEEecCCcceeeeee
Q psy13076        312 VAWKPDGTQLLTASG----------DKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       312 l~~~~~~~~l~s~s~----------d~~i~iwd~~~~~~i~~~~  345 (423)
                      ++++|+++.|.....          .+.|-++|..+++.+....
T Consensus       253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~  296 (352)
T TIGR02658       253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE  296 (352)
T ss_pred             EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence            999999988877432          1357777777776655543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.35  E-value=2.8e-08  Score=86.42  Aligned_cols=289  Identities=17%  Similarity=0.266  Sum_probs=176.7

Q ss_pred             cceEEEEeccCCCCceeec--ccccCceeEEEEeCCCCeEEEecC---CCceEEeecC--CcceeecccCCCCC-CceEE
Q psy13076         25 SGFISYLDVNNPSTPIRVI--KGHNKPITALALSPDRGTVFTGSH---DGFITRWNAK--TEYIFATLPRTQRG-QPIVL   96 (423)
Q Consensus        25 dg~i~~~d~~~~~~~~~~~--~gh~~~V~~l~~~~~~~~l~sg~~---D~~i~vW~~~--~~~~~~~~~~~~~~-~~~~~   96 (423)
                      ..-|++|++++....+..+  -++.+..+=|+|+|+++.|.++..   +|.|-.+.++  +|++...-.....+ .++-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            4789999998544444332  357788999999999999988755   4677666554  35442211112233 44888


Q ss_pred             eeCCCCCeEEEec--CCeEEEEecC-CCccccc--ccCCcce----------EEEEEECCCCCEEEEEcc-CCcEEEEEc
Q psy13076         97 GGDPKGKNFLYTN--GNSVIIRNIE-NPAISDI--YTEHSCA----------VNVAKYSPSGFYIASGDI-SGKVRIWDT  160 (423)
Q Consensus        97 ~~~~~~~~~~~~~--~~~~~i~~~~-~~~~~~~--~~~h~~~----------i~~~~~sp~~~~l~s~~~-d~~i~vwd~  160 (423)
                      +.+++|+.++..+  .+.+.+..+. .|.+...  ...|...          ++...|.|+++++++.+- ...|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            8999998887764  5677777764 3444332  2235444          899999999999998764 356899999


Q ss_pred             CCCceeEEe-eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC-cceecc---------cCCCcceeEEEEec
Q psy13076        161 VNKEHILKN-EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG-TSVGEI---------SGQSKPINSCDFKP  229 (423)
Q Consensus       161 ~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~i~~~~~~~  229 (423)
                      +++...... .....+..-+-|.|+|++++..++..-... ..++..+.. ..+..+         .........+.++|
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st-V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST-VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE-EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence            865432111 111334456889999999998887654432 233433331 111111         12234456788899


Q ss_pred             CCCeeEEEEeCCCeEEEEcCCCc--ee--eeeccccccCeEEEEECCCCCEEEEEEecC-eEEEEE--CCCccceecccc
Q psy13076        230 SRPFRIITGSEDNTIAVFEGPPF--KF--KMTKQEHSRFVQAVRYSPSGSHFASAGFDG-KVFLYD--GASADLVSELGN  302 (423)
Q Consensus       230 ~~~~~~~s~s~d~~i~~~~~~~~--~~--~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg-~i~vwd--~~~~~~~~~~~~  302 (423)
                      +++++-++--....|.+|...+.  ++  ......+....+...++|.|++|+++.+++ .|.+|.  ..+|++-. +..
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~-~~~  332 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL-LGR  332 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe-ccc
Confidence            99884443334557888864432  21  112222333457788999999998888754 577765  44555432 222


Q ss_pred             cccCCCeEEEEEC
Q psy13076        303 PAHKGGVYAVAWK  315 (423)
Q Consensus       303 ~~~~~~i~~l~~~  315 (423)
                      ...-....|+.|.
T Consensus       333 ~~~~p~Pvcv~f~  345 (346)
T COG2706         333 YAVVPEPVCVKFL  345 (346)
T ss_pred             ccCCCCcEEEEEc
Confidence            2334445677664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.3e-09  Score=103.81  Aligned_cols=236  Identities=13%  Similarity=0.148  Sum_probs=136.5

Q ss_pred             eEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCC---CceEEeecCCcceeecccCCCCCCceEEeeCCCCC
Q psy13076         27 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD---GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGK  103 (423)
Q Consensus        27 ~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D---~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (423)
                      .|.++|.+. . ..+.+..+..++...+|+|+|+.|+..+.+   ..|.+||++++......                  
T Consensus       180 ~l~~~d~~g-~-~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~------------------  239 (430)
T PRK00178        180 TLQRSDYDG-A-RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT------------------  239 (430)
T ss_pred             EEEEECCCC-C-CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc------------------
Confidence            477778753 2 244555677899999999999988766543   35777787765322100                  


Q ss_pred             eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCC--cEEEEEcCCCceeEEeeecCCCCCeeE
Q psy13076        104 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISG--KVRIWDTVNKEHILKNEFHPIGGPIKD  180 (423)
Q Consensus       104 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~v~~  180 (423)
                                            .+.+   .+....|+|||+.++ +.+.++  .|.+||+.+++...   +.........
T Consensus       240 ----------------------~~~g---~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~---lt~~~~~~~~  291 (430)
T PRK00178        240 ----------------------NFEG---LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR---VTNHPAIDTE  291 (430)
T ss_pred             ----------------------CCCC---CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE---cccCCCCcCC
Confidence                                  0011   223467999998876 454455  57777887665322   1112233556


Q ss_pred             EEECCCCCeEEEEEcCCceeeEEEe--ecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCceeee
Q psy13076        181 IAWSPDNQRMVVVGEGRERFGHVFM--SETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFKM  256 (423)
Q Consensus       181 v~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~~~~~  256 (423)
                      ..|+|||+.++..+..... ..++.  ...+. ...+...........|+|++..+..+...++  .|.+++........
T Consensus       292 ~~~spDg~~i~f~s~~~g~-~~iy~~d~~~g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~  369 (430)
T PRK00178        292 PFWGKDGRTLYFTSDRGGK-PQIYKVNVNGGR-AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI  369 (430)
T ss_pred             eEECCCCCEEEEEECCCCC-ceEEEEECCCCC-EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE
Confidence            7899999998877643322 23333  33333 2222222222345678999987656554444  46777765443322


Q ss_pred             eccccccCeEEEEECCCCCEEEEEEec-C--eEEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAGFD-G--KVFLYDGASADLVSELGNPAHKGGVYAVAWKPD  317 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~  317 (423)
                      ....  .......|+|+|++++..+.+ |  .+.+++.. +.....+.  .+.+.+...+|+|-
T Consensus       370 lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~--~~~g~~~~p~ws~~  428 (430)
T PRK00178        370 LTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLP--TAQGEVREPSWSPY  428 (430)
T ss_pred             ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc--CCCCCcCCCccCCC
Confidence            1111  112245899999998777654 2  46666664 33333332  23455677778773

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.34  E-value=7.9e-10  Score=105.13  Aligned_cols=214  Identities=18%  Similarity=0.187  Sum_probs=127.4

Q ss_pred             ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCC---CceEEeecCCcceeecccCCCCCCceEEeeCCCC
Q psy13076         26 GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD---GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG  102 (423)
Q Consensus        26 g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D---~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (423)
                      ..|.++|...  ...+.+..+++.+.+.+|+|++++|+.++.+   ..|++||+++++....                  
T Consensus       170 ~~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~------------------  229 (417)
T TIGR02800       170 YELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV------------------  229 (417)
T ss_pred             ceEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe------------------
Confidence            3688888742  3344566677789999999999998876543   4788898876532110                  


Q ss_pred             CeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCC--cEEEEEcCCCceeEEeeecCCCCCee
Q psy13076        103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISG--KVRIWDTVNKEHILKNEFHPIGGPIK  179 (423)
Q Consensus       103 ~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~v~  179 (423)
                                               ..+...+...+|+|||+.|+ +.+.++  .|.+||+.++....   .........
T Consensus       230 -------------------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~---l~~~~~~~~  281 (417)
T TIGR02800       230 -------------------------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR---LTNGPGIDT  281 (417)
T ss_pred             -------------------------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE---CCCCCCCCC
Confidence                                     01122334568999998776 444444  58888887654321   111223345


Q ss_pred             EEEECCCCCeEEEEEcCCceeeEEEeecC-CcceecccCCCcceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCceeee
Q psy13076        180 DIAWSPDNQRMVVVGEGRERFGHVFMSET-GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFKM  256 (423)
Q Consensus       180 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~~~~~  256 (423)
                      ...|+||++.++..+..... ..++..+. +.....+...........|+|++.+++++....+  .|.+++........
T Consensus       282 ~~~~s~dg~~l~~~s~~~g~-~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~  360 (417)
T TIGR02800       282 EPSWSPDGKSIAFTSDRGGS-PQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV  360 (417)
T ss_pred             CEEECCCCCEEEEEECCCCC-ceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE
Confidence            67899999998877643322 13333221 2223334444455667889999987555443332  67777765433222


Q ss_pred             eccccccCeEEEEECCCCCEEEEEEecC---eEEEEE
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAGFDG---KVFLYD  290 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s~dg---~i~vwd  290 (423)
                      .. .. .......|+|+|++|+..+.++   .+.+.+
T Consensus       361 l~-~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~  395 (417)
T TIGR02800       361 LT-DT-GLDESPSFAPNGRMILYATTRGGRGVLGLVS  395 (417)
T ss_pred             cc-CC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence            11 11 1234568999999888877654   344544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.31  E-value=1.3e-08  Score=91.83  Aligned_cols=350  Identities=15%  Similarity=0.149  Sum_probs=209.8

Q ss_pred             eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec----------
Q psy13076         40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN----------  109 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  109 (423)
                      ...+..-+-+++.+.+||.|.+|++... ..|.+|.-.....+..+.+   ....-+.++|.++++..-.          
T Consensus        25 ~~~~~~~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~kYL~tw~~~pi~~pe~e  100 (561)
T COG5354          25 HTRFESENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFRH---PDVKYLDFSPNEKYLVTWSREPIIEPEIE  100 (561)
T ss_pred             cccccccCcchhheeecCcchheehhhc-cceEEccccchhheeeeec---CCceecccCcccceeeeeccCCccChhhc
Confidence            3355557779999999999999988765 4589998776654443322   2334467788887776532          


Q ss_pred             ------CCeEEEEecCCCcccccccCCcce--EE-EEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCC-CCCee
Q psy13076        110 ------GNSVIIRNIENPAISDIYTEHSCA--VN-VAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI-GGPIK  179 (423)
Q Consensus       110 ------~~~~~i~~~~~~~~~~~~~~h~~~--i~-~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~v~  179 (423)
                            .+.+.+||..++.++..+.+...+  .+ -++|+-+.+|+|=- ....+.++++ +.... ...++.. ...+.
T Consensus       101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~lr~~gi~  177 (561)
T COG5354         101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE-EHPFKNLRPVGIL  177 (561)
T ss_pred             cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc-cCchhhcccccee
Confidence                  235789999999999888877766  66 78999998887654 3356899996 32211 1111111 24578


Q ss_pred             EEEECCCC--CeEEEEEcC---CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEE-----e-----CCCeE
Q psy13076        180 DIAWSPDN--QRMVVVGEG---RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG-----S-----EDNTI  244 (423)
Q Consensus       180 ~v~~s~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~-----s-----~d~~i  244 (423)
                      ...|+|.+  ..++.....   ......++..-....+..-..-...-..+.|++.+.++++-.     +     .+..+
T Consensus       178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL  257 (561)
T COG5354         178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL  257 (561)
T ss_pred             eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence            88899864  333333211   111222222211111111000011122456677776644321     1     12456


Q ss_pred             EEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE--ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEE
Q psy13076        245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG--FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL  322 (423)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  322 (423)
                      ++++.....+.... ...++|-..+|+|.++.+++.+  .+-.+.++|++.. +...+..    +.=..+.|+|.+++++
T Consensus       258 yl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe----~~rNT~~fsp~~r~il  331 (561)
T COG5354         258 YLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE----QKRNTIFFSPHERYIL  331 (561)
T ss_pred             EEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCC----cccccccccCcccEEE
Confidence            66665433322222 4567889999999998766554  5778889998765 3333322    2224688999999999


Q ss_pred             EEeCCC---cEEEEecCCcceee-eeeeCceeEeeEEEEEecCcEEEEEeC------CCcEEEEecCCCCCceEEeccCC
Q psy13076        323 TASGDK---TCKLWDIETKSAVS-EFLMGNQVEDQQVSCLWQGDYLLTVSL------SGFISYLDVNNPSTPIRVIKGHN  392 (423)
Q Consensus       323 s~s~d~---~i~iwd~~~~~~i~-~~~~~~~~~~~~~~~~~~g~~l~~~~~------~~~i~~~~~~~~~~~~~~~~~h~  392 (423)
                      .++-|+   .+-+||....-.+. .+...+.   .-...+++|+++.+...      |..+++|++.....         
T Consensus       332 ~agF~nl~gni~i~~~~~rf~~~~~~~~~n~---s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~---------  399 (561)
T COG5354         332 FAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT---SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV---------  399 (561)
T ss_pred             EecCCccccceEEeccCCceEEEEEeecCCc---eEeeccCCceEEEecCCCcccccCcceEEEEecCchh---------
Confidence            988775   59999987654333 4432211   11223458888876543      55688888865321         


Q ss_pred             CceeEEEecCCCCeEEEecCCC
Q psy13076        393 KPITALALSPDRGTVFTGSHDG  414 (423)
Q Consensus       393 ~~v~~i~~sp~~~~l~s~s~D~  414 (423)
                      -..+.+.|-|.+++..+.|.+.
T Consensus       400 fel~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         400 FELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             hhhhhccccCCcccceeeccCC
Confidence            1567788888777766655543

>KOG2315|consensus

Probab=99.30  E-value=2.1e-08  Score=91.53  Aligned_cols=309  Identities=16%  Similarity=0.189  Sum_probs=182.4

Q ss_pred             eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc-----cC-----CcEEEEEcCCC
Q psy13076         94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-----IS-----GKVRIWDTVNK  163 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-----~d-----~~i~vwd~~~~  163 (423)
                      .+...++.|+.++++.+..+.|.+..+........ - ..+..+.|+|-|.||.+=-     .+     ..+++|++++.
T Consensus        38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~-~-~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~  115 (566)
T KOG2315|consen   38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVE-L-KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG  115 (566)
T ss_pred             eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEec-c-ceeeeeeecccccccccccccccccCCCCCCCceeeeeeccc
Confidence            45678889999999999999998887764222111 1 2678899999999987632     12     35779998873


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecC-CCeeEEE-----
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS-RPFRIIT-----  237 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s-----  237 (423)
                      ............+  .+..|++|....+-...+   ..+++.... .....-+-+...|+...++|. .+..+++     
T Consensus       116 ~~~s~~q~k~Q~~--W~~qfs~dEsl~arlv~n---ev~f~~~~~-f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~  189 (566)
T KOG2315|consen  116 VQRSQIQKKMQNG--WVPQFSIDESLAARLVSN---EVQFYDLGS-FKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK  189 (566)
T ss_pred             eehhheehhhhcC--cccccccchhhhhhhhcc---eEEEEecCC-ccceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence            2211111111111  366788876544332211   122333222 111112234567888888887 4443433     


Q ss_pred             EeCCCeEEEEcCCCceeeeeccccc----cCeEEEEECCCCC-EEEEEE--ecC---------eEEEEECCCccceeccc
Q psy13076        238 GSEDNTIAVFEGPPFKFKMTKQEHS----RFVQAVRYSPSGS-HFASAG--FDG---------KVFLYDGASADLVSELG  301 (423)
Q Consensus       238 ~s~d~~i~~~~~~~~~~~~~~~~~~----~~i~~l~~s~~g~-~l~s~s--~dg---------~i~vwd~~~~~~~~~~~  301 (423)
                      .+.-..+++|..+....... .+..    ..=..+.|++-|. +|+.++  -|+         .+++.+.........+.
T Consensus       190 kGaPa~vri~~~~~~~~~~~-~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~  268 (566)
T KOG2315|consen  190 KGAPASVRIYKYPEEGQHQP-VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL  268 (566)
T ss_pred             CCCCcEEEEeccccccccch-hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence            23445688886542111111 1111    1113467888776 333333  343         56666665333333332


Q ss_pred             ccccCCCeEEEEECCCCCeEEEE--eCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeC---CCcEEEE
Q psy13076        302 NPAHKGGVYAVAWKPDGTQLLTA--SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL---SGFISYL  376 (423)
Q Consensus       302 ~~~~~~~i~~l~~~~~~~~l~s~--s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~i~~~  376 (423)
                         -.+.|.++.|+|+++-++.+  -+=-++.|||++-. .+..+..+.   -..+-+.+.|.+++.++.   .|.+.+|
T Consensus       269 ---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df~egp---RN~~~fnp~g~ii~lAGFGNL~G~mEvw  341 (566)
T KOG2315|consen  269 ---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDFPEGP---RNTAFFNPHGNIILLAGFGNLPGDMEVW  341 (566)
T ss_pred             ---CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeCCCCC---ccceEECCCCCEEEEeecCCCCCceEEE
Confidence               36889999999999877664  33457899998643 444443222   223455678999876554   5789999


Q ss_pred             ecCCCCCceEEeccCCCceeEEEecCCCCeEEEecC------CCcEEEeeC
Q psy13076        377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH------DGFITRWNA  421 (423)
Q Consensus       377 ~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~------D~~i~~W~~  421 (423)
                      |+.+. ..+..+..  ..-+-++|+|||++|+|+..      |.-++||+.
T Consensus       342 Dv~n~-K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  342 DVPNR-KLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             eccch-hhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            99883 33333332  34567899999999998764      788999985

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.5e-09  Score=103.28  Aligned_cols=235  Identities=15%  Similarity=0.194  Sum_probs=134.2

Q ss_pred             eEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCC-C--ceEEeecCCcceeecccCCCCCCceEEeeCCCCC
Q psy13076         27 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD-G--FITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGK  103 (423)
Q Consensus        27 ~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D-~--~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (423)
                      .|.+.|.+.. . .+.+..+..++.+..|+|||+.|+..+.+ +  .|.+||+.+++.....                  
T Consensus       199 ~l~i~d~dG~-~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt------------------  258 (448)
T PRK04792        199 QLMIADYDGY-N-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT------------------  258 (448)
T ss_pred             EEEEEeCCCC-C-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec------------------
Confidence            6777776532 2 23455567789999999999988765433 2  4777777654321100                  


Q ss_pred             eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEE-EccCCc--EEEEEcCCCceeEEeeecCCCCCeeE
Q psy13076        104 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS-GDISGK--VRIWDTVNKEHILKNEFHPIGGPIKD  180 (423)
Q Consensus       104 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s-~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~v~~  180 (423)
                                            .+.++   .....|+|||+.++. .+.++.  |.++|+.+++...   ..........
T Consensus       259 ----------------------~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~---lt~~~~~~~~  310 (448)
T PRK04792        259 ----------------------SFPGI---NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR---ITRHRAIDTE  310 (448)
T ss_pred             ----------------------CCCCC---cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE---CccCCCCccc
Confidence                                  01111   124679999997764 555665  6667876654321   1112234567


Q ss_pred             EEECCCCCeEEEEEcCCceeeEEEee--cCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe--EEEEcCCCceeee
Q psy13076        181 IAWSPDNQRMVVVGEGRERFGHVFMS--ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT--IAVFEGPPFKFKM  256 (423)
Q Consensus       181 v~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~--i~~~~~~~~~~~~  256 (423)
                      .+|+|||+.++..+..... ..++..  .++. ...+...........|+|++.+++++...++.  |.+++........
T Consensus       311 p~wSpDG~~I~f~s~~~g~-~~Iy~~dl~~g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~  388 (448)
T PRK04792        311 PSWHPDGKSLIFTSERGGK-PQIYRVNLASGK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV  388 (448)
T ss_pred             eEECCCCCEEEEEECCCCC-ceEEEEECCCCC-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence            8999999998887653322 234433  3333 23332222223456899999886666555554  4445544433222


Q ss_pred             eccccccCeEEEEECCCCCEEEEEEec-C--eEEEEECCCccceecccccccCCCeEEEEECC
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAGFD-G--KVFLYDGASADLVSELGNPAHKGGVYAVAWKP  316 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~  316 (423)
                      .....  ......|+|+|++++..+.+ +  .+.+++. +++....+.  .+.+.+...+|+|
T Consensus       389 lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~--~~~g~~~~p~Wsp  446 (448)
T PRK04792        389 LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP--AGQGEVKSPAWSP  446 (448)
T ss_pred             ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc--CCCCCcCCCccCC
Confidence            11111  12235799999988776643 3  3667775 455444453  2345567788887

>KOG2321|consensus

Probab=99.30  E-value=1.7e-09  Score=98.78  Aligned_cols=281  Identities=14%  Similarity=0.179  Sum_probs=171.9

Q ss_pred             cccCceeEEEEeCCCCe-EEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc
Q psy13076         45 GHNKPITALALSPDRGT-VFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI  123 (423)
Q Consensus        45 gh~~~V~~l~~~~~~~~-l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  123 (423)
                      +|...-+.+..+|||++ ++||-....|+++|+.+-.+.  +.++....+                              
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~------------------------------   96 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEV------------------------------   96 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccc------------------------------
Confidence            57788899999999997 678889999999999763321  112111111                              


Q ss_pred             cccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076        124 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV  203 (423)
Q Consensus       124 ~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~  203 (423)
                                |.-.-.+-|=.-++--..|.+|.+.........  ..   .+..-.+++++.-..-|++++.+.+.+  -
T Consensus        97 ----------V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~--~R---IP~~GRDm~y~~~scDly~~gsg~evY--R  159 (703)
T KOG2321|consen   97 ----------VDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR--TR---IPKFGRDMKYHKPSCDLYLVGSGSEVY--R  159 (703)
T ss_pred             ----------eeEEEeccchhhheEeecCceeeehhhcCeeee--ee---cCcCCccccccCCCccEEEeecCcceE--E
Confidence                      111111111112222234455544332111100  00   112334566665444566666655543  3


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee------eecccc-----ccCeEEEEECC
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK------MTKQEH-----SRFVQAVRYSP  272 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~------~~~~~~-----~~~i~~l~~s~  272 (423)
                      +..+.|.=+..+......+++|..++-.. ++++|+.+|.+..||.+.-...      .....|     ...|+++.|+.
T Consensus       160 lNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d  238 (703)
T KOG2321|consen  160 LNLEQGRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD  238 (703)
T ss_pred             EEccccccccccccccccceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC
Confidence            44555666666677778899999998766 4888888999999996532211      111122     23489999999


Q ss_pred             CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCC--CCeEEEEeCCCcEEEEecCCcceeeeeeeCcee
Q psy13076        273 SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD--GTQLLTASGDKTCKLWDIETKSAVSEFLMGNQV  350 (423)
Q Consensus       273 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~  350 (423)
                      +|-.+++|+.+|.+.++|+++.+.+..- .+.....|..+.|.+.  ++.++| .+...++|||-.+++.........  
T Consensus       239 ~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~--  314 (703)
T KOG2321|consen  239 DGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS--  314 (703)
T ss_pred             CceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC--
Confidence            9999999999999999999998866443 2344567889999775  344554 455689999999988765543222  


Q ss_pred             EeeEEEEEecCcEEEEEeCCCcEEEEecC
Q psy13076        351 EDQQVSCLWQGDYLLTVSLSGFISYLDVN  379 (423)
Q Consensus       351 ~~~~~~~~~~g~~l~~~~~~~~i~~~~~~  379 (423)
                      ....++..+++.-+.++-.++.+.-|-+.
T Consensus       315 ~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  315 DLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             CcCceeeecCCceEEEecCCCcceeEEcc
Confidence            23344555566666666666655444443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.29  E-value=1.5e-09  Score=103.23  Aligned_cols=207  Identities=14%  Similarity=0.145  Sum_probs=130.4

Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC---CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCC
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ  188 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  188 (423)
                      .+.+++.+... ...+..+...+....|+|||++++....+   ..|.+||+.+++.....   ...+.+.+.+|+|||+
T Consensus       171 ~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       171 ELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---SFPGMNGAPAFSPDGS  246 (417)
T ss_pred             eEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCCC
Confidence            46666665433 34455566678889999999999987654   47999999876543221   2234556789999999


Q ss_pred             eEEEEEcCCc-eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCceeeeeccccccCe
Q psy13076        189 RMVVVGEGRE-RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFKMTKQEHSRFV  265 (423)
Q Consensus       189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~~~~~~~~~~~~~i  265 (423)
                      .++....... ....++...++. ...+..+........|+|++..++.+...++  .|++++....+.. .+..+....
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~  324 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN  324 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence            8877654322 222333333332 3333333334456789998887555554444  4666665443322 222234456


Q ss_pred             EEEEECCCCCEEEEEEecC---eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCC
Q psy13076        266 QAVRYSPSGSHFASAGFDG---KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       266 ~~l~~s~~g~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                      ....|+|+|++++.++.++   .|.+||..++.. ..+...   ......+|+|+|++|+..+.++
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~---~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT---GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC---CCCCCceECCCCCEEEEEEeCC
Confidence            6789999999999888776   789999877543 223211   2234568999999888877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2314|consensus

Probab=99.28  E-value=7.4e-09  Score=94.30  Aligned_cols=309  Identities=17%  Similarity=0.190  Sum_probs=177.4

Q ss_pred             ceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC-----------CcEEEEEcC
Q psy13076         93 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS-----------GKVRIWDTV  161 (423)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d-----------~~i~vwd~~  161 (423)
                      ...+.++|.|.+++.-....+.+|.-++-.-.+.| .|. .|.-+.|||..+||+|-+..           ..++|||+.
T Consensus       213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeeEEecCCceEEEEEeccceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            34678999999999888889999975442222222 244 57889999999999997642           579999999


Q ss_pred             CCceeEEeeecCCCC-CeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe-
Q psy13076        162 NKEHILKNEFHPIGG-PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS-  239 (423)
Q Consensus       162 ~~~~~~~~~~~~~~~-~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s-  239 (423)
                      ++............. .-.-..||.|+++++.....   ..+++....-..+..-.-....|....|+|....+..-.- 
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~---sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe  367 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN---SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE  367 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEeccc---eEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence            876443222111111 12347899999999876542   1223322111111111112334666778887543111100 


Q ss_pred             CC---CeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE----------ecCeEEEEECCCccceecccccccC
Q psy13076        240 ED---NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG----------FDGKVFLYDGASADLVSELGNPAHK  306 (423)
Q Consensus       240 ~d---~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~  306 (423)
                      .+   -.+.+...+......+..-+.-.-..|.|-.+|.||+.--          .-..+.|+.++........  ....
T Consensus       368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~--velk  445 (698)
T KOG2314|consen  368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV--VELK  445 (698)
T ss_pred             ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee--eecc
Confidence            01   1223333333322222222222223567778888887532          1123455555443321111  1235


Q ss_pred             CCeEEEEECCCCCeEEEEeC---CCcEEEEecCCc----ceeeeeeeCceeEeeEEEEEecCcEEEEE---eCCCcEEEE
Q psy13076        307 GGVYAVAWKPDGTQLLTASG---DKTCKLWDIETK----SAVSEFLMGNQVEDQQVSCLWQGDYLLTV---SLSGFISYL  376 (423)
Q Consensus       307 ~~i~~l~~~~~~~~l~s~s~---d~~i~iwd~~~~----~~i~~~~~~~~~~~~~~~~~~~g~~l~~~---~~~~~i~~~  376 (423)
                      ..|...+|-|.|+.+++-+.   ..++++|-+.+.    +++..+.   ......+.-+|.|.+++.+   +..|.+.++
T Consensus       446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcCCCcEEEEEEecccccceEEE
Confidence            66889999999988776544   346888987732    2233332   1233445566799998765   456789999


Q ss_pred             ecCCCCCceEEeccCCCceeEEEecCCCCeEEEecC
Q psy13076        377 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH  412 (423)
Q Consensus       377 ~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~  412 (423)
                      |.............| -.-+.+.|-|.|+|++|++.
T Consensus       523 D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  523 DTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             ecchhhhhhccCccc-cccccceECCCCCEEEEeee
Confidence            987533222122233 24678999999999999875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=3.7e-09  Score=100.67  Aligned_cols=205  Identities=14%  Similarity=0.118  Sum_probs=121.4

Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC-C--cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCC
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS-G--KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ  188 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d-~--~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  188 (423)
                      .+.+.+.+.... ..+..+...+....|+|||+.++..+.+ +  .|.+||+.+++......+   .+......|+|||+
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeECCCCC
Confidence            344455544332 3445566678889999999999876543 3  588888877654322112   23345689999999


Q ss_pred             eEEEEEcCCce-eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe--EEEEcCCCceee-eeccccccC
Q psy13076        189 RMVVVGEGRER-FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT--IAVFEGPPFKFK-MTKQEHSRF  264 (423)
Q Consensus       189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~--i~~~~~~~~~~~-~~~~~~~~~  264 (423)
                      .++........ ...+++.+++ ....+..+........|+|++..++.++..++.  |++++....+.. .+..  ...
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~--g~~  351 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATK-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE--GEQ  351 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCC-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC--CCC
Confidence            98876544332 1222333333 334444444455678899999886666655554  555565433322 1222  222


Q ss_pred             eEEEEECCCCCEEEEEEec-C--eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        265 VQAVRYSPSGSHFASAGFD-G--KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       265 i~~l~~s~~g~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      ....+|+|||++++..+.+ +  .|.++|+.+++. ..+...   .......|+|||+.|+..+.+
T Consensus       352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~---~~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTST---RLDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCC---CCCCCceECCCCCEEEEEEec
Confidence            3457899999998776653 3  466678777653 233211   112345799999988765543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=5.1e-09  Score=99.86  Aligned_cols=206  Identities=13%  Similarity=0.083  Sum_probs=125.9

Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC---CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCC
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ  188 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  188 (423)
                      .+.+.+.+.... ..+..+...+....|+|||+.|+..+.+   ..|.+||+.+++.....   ...+.+....|+|||+
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---NFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---CCCCCcCCeEECCCCC
Confidence            355666665443 3445566778899999999999876543   36888998776543211   1223455789999999


Q ss_pred             eEEEEEcCCce-eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCceeeeeccccccCe
Q psy13076        189 RMVVVGEGRER-FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFKMTKQEHSRFV  265 (423)
Q Consensus       189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~~~~~~~~~~~~~i  265 (423)
                      .++......+. ...+++.+++. ...+..+........|+|++..++.+...++  .|++++....+..... ......
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~  333 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYN  333 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCc
Confidence            88865543322 22333444333 3334444445566789999987666655544  4666665443322111 111223


Q ss_pred             EEEEECCCCCEEEEEEec-C--eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        266 QAVRYSPSGSHFASAGFD-G--KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       266 ~~l~~s~~g~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      ...+|+|+|++++..+.+ +  .|.++|+.+++. ..+...   .......|+|||++++..+.+
T Consensus       334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~---~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDT---SLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             cceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCC---CCCCCceECCCCCEEEEEEec
Confidence            457899999998877653 3  588899887753 333321   122356899999988776653

>KOG1354|consensus

Probab=99.26  E-value=3.7e-09  Score=90.77  Aligned_cols=288  Identities=15%  Similarity=0.242  Sum_probs=164.2

Q ss_pred             cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc
Q psy13076         47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI  126 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  126 (423)
                      -+-|.++.|...|.+|+||..+|.|-++.-+...-                    +...+.+..   +-..++= ..++.
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--------------------~ey~~~t~f---qshepEF-DYLkS   80 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK--------------------GEYNFQTEF---QSHEPEF-DYLKS   80 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccc--------------------cceeeeeee---eccCccc-chhhh
Confidence            35688999999999999999999998885432110                    000000000   0000000 00000


Q ss_pred             ccCCcceEEEEEECCCC--CEEEEEccCCcEEEEEcCCCceeEEe---eecCCCCCeeEEEEC---CCCCeEEEEEcCCc
Q psy13076        127 YTEHSCAVNVAKYSPSG--FYIASGDISGKVRIWDTVNKEHILKN---EFHPIGGPIKDIAWS---PDNQRMVVVGEGRE  198 (423)
Q Consensus       127 ~~~h~~~i~~~~~sp~~--~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~~~~~v~~v~~s---~~~~~~~~~~~~~~  198 (423)
                      + .-...|+.++|-+++  ..++....|.+|++|.+..+......   ........+.++..-   |....+.+      
T Consensus        81 l-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea------  153 (433)
T KOG1354|consen   81 L-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEA------  153 (433)
T ss_pred             h-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeee------
Confidence            0 112357778887754  45666778999999998654322100   000111222222211   11100000      


Q ss_pred             eeeEEEeecCCcceec-ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC--ceeee------eccccccCeEEEE
Q psy13076        199 RFGHVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP--FKFKM------TKQEHSRFVQAVR  269 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~--~~~~~------~~~~~~~~i~~l~  269 (423)
                                 .+.+. ...|.-.|+++.++.++.. ++ ++.|=.|.+|....  ..+..      ..+.....|++..
T Consensus       154 -----------~prRv~aNaHtyhiNSIS~NsD~Et-~l-SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaE  220 (433)
T KOG1354|consen  154 -----------SPRRVYANAHTYHINSISVNSDKET-FL-SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAE  220 (433)
T ss_pred             -----------eeeeeccccceeEeeeeeecCccce-Ee-eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhc
Confidence                       01111 2357778999999988875 44 45677888997432  11111      1122335688999


Q ss_pred             ECCCCC-EEEEEEecCeEEEEECCCccc------eeccccc--------ccCCCeEEEEECCCCCeEEEEeCCCcEEEEe
Q psy13076        270 YSPSGS-HFASAGFDGKVFLYDGASADL------VSELGNP--------AHKGGVYAVAWKPDGTQLLTASGDKTCKLWD  334 (423)
Q Consensus       270 ~s~~g~-~l~s~s~dg~i~vwd~~~~~~------~~~~~~~--------~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd  334 (423)
                      |+|... .++-.+..|+|++-|+++.-+      +.+....        .--..|.++.|+++|+|+++-. --+|++||
T Consensus       221 Fhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD  299 (433)
T KOG1354|consen  221 FHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWD  299 (433)
T ss_pred             cCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEe
Confidence            999765 677788899999999984321      1111111        1124588999999999998753 36899999


Q ss_pred             c-CCcceeeeeeeCce------------eEeeEEEEEecCc--EEEEEeCCCcEEEEecC
Q psy13076        335 I-ETKSAVSEFLMGNQ------------VEDQQVSCLWQGD--YLLTVSLSGFISYLDVN  379 (423)
Q Consensus       335 ~-~~~~~i~~~~~~~~------------~~~~~~~~~~~g~--~l~~~~~~~~i~~~~~~  379 (423)
                      + ...+.+.++.....            .....+-|.++|+  .+++|+.+...++++..
T Consensus       300 ~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  300 LNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA  359 (433)
T ss_pred             ccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence            9 44444555443321            1122345666655  89999999999999843

>KOG4547|consensus

Probab=99.25  E-value=5e-10  Score=102.57  Aligned_cols=175  Identities=23%  Similarity=0.290  Sum_probs=120.3

Q ss_pred             CCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC---CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc
Q psy13076        140 SPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP---IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS  216 (423)
Q Consensus       140 sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (423)
                      .|...|+|....||.+|+||..+.+...  +|.+   ..+...+..|.      +.+..            +......+.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~--e~~p~~~~s~t~~~~~w~------L~~~~------------s~~k~~~~~   61 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQ--EFAPIASLSGTCTYTKWG------LSADY------------SPMKWLSLE   61 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeee--eeccchhccCcceeEEEE------EEecc------------chHHHHhHH
Confidence            3557899999999999999988765332  2211   22334444443      11111            111111110


Q ss_pred             CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee--eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCc
Q psy13076        217 GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM--TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA  294 (423)
Q Consensus       217 ~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~--~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~  294 (423)
                      ...       -...+...++-|...|.|.+|+.....+..  ....|.+.++++.++.+-..|.+++.|+.+..|+.+..
T Consensus        62 ~~~-------~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~  134 (541)
T KOG4547|consen   62 KAK-------KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK  134 (541)
T ss_pred             HHh-------hccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence            000       001233457778888999999876655544  44578899999999999999999999999999999988


Q ss_pred             cceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeee
Q psy13076        295 DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       295 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~  345 (423)
                      +.+....  .....+.+++.+|||..|++++  ++|++||+++++.+.+|.
T Consensus       135 ~~~~~~~--~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft  181 (541)
T KOG4547|consen  135 VIIRIWK--EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT  181 (541)
T ss_pred             eeeeeec--cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec
Confidence            8776653  3566788999999999999886  689999999988766553

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.25  E-value=4e-08  Score=88.80  Aligned_cols=314  Identities=14%  Similarity=0.130  Sum_probs=188.2

Q ss_pred             ceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCC---------------cEEE
Q psy13076         93 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG---------------KVRI  157 (423)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~---------------~i~v  157 (423)
                      ...+.++|.|..+++.....+.+|.-+...  .....-...|.-+.|+|.++||.+-+...               .+.+
T Consensus        35 ~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~--~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v  112 (561)
T COG5354          35 VAYVSESPLGTYLFSEHAAGVECWGGPSKA--KLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV  112 (561)
T ss_pred             hhheeecCcchheehhhccceEEccccchh--heeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeE
Confidence            345678999999988888889999876554  22222334688899999999999977544               4899


Q ss_pred             EEcCCCceeEEeeecCCCCCee-EEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc---CCCcceeEEEEecCCCe
Q psy13076        158 WDTVNKEHILKNEFHPIGGPIK-DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS---GQSKPINSCDFKPSRPF  233 (423)
Q Consensus       158 wd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~  233 (423)
                      ||..++..+............. -+.|+-+.++.+-+... .  .+++.. + ..+....   .....+....++|.++.
T Consensus       113 wd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~-s--l~i~e~-t-~n~~~~p~~~lr~~gi~dFsisP~~n~  187 (561)
T COG5354         113 WDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS-S--LYIHEI-T-DNIEEHPFKNLRPVGILDFSISPEGNH  187 (561)
T ss_pred             EeccCceeEeeccccCCcccccceeeeeecchhhhhhccC-e--EEEEec-C-CccccCchhhccccceeeEEecCCCCC
Confidence            9998876654433322221122 57888888776654222 1  222221 1 1111111   11234666677775321


Q ss_pred             e-EE-----EEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe-----------cCeEEEEECCCccc
Q psy13076        234 R-II-----TGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF-----------DGKVFLYDGASADL  296 (423)
Q Consensus       234 ~-~~-----s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~-----------dg~i~vwd~~~~~~  296 (423)
                      . ++     ......++++|..+......+..--+..-..+.|++.|.+|+.-..           +..+.+++......
T Consensus       188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i  267 (561)
T COG5354         188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI  267 (561)
T ss_pred             ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc
Confidence            1 11     1245667777776533222111111111235788899987654221           13456666553332


Q ss_pred             eecccccccCCCeEEEEECCCCCeEEEEe--CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeC---CC
Q psy13076        297 VSELGNPAHKGGVYAVAWKPDGTQLLTAS--GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL---SG  371 (423)
Q Consensus       297 ~~~~~~~~~~~~i~~l~~~~~~~~l~s~s--~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~  371 (423)
                      ....   ...+.|..++|.|.++.+++.+  .+-++-++|++.. +...+.   +.....+.+++.+.+++.+..   .|
T Consensus       268 ~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rNT~~fsp~~r~il~agF~nl~g  340 (561)
T COG5354         268 PVEK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP---EQKRNTIFFSPHERYILFAGFDNLQG  340 (561)
T ss_pred             ceec---cccccceeeeecccCCceeEEecccccceeecccccc-eEEecC---CcccccccccCcccEEEEecCCcccc
Confidence            2221   2367899999999988776655  6788999999876 322221   223345667778999887654   46


Q ss_pred             cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEec------CCCcEEEeeCC
Q psy13076        372 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS------HDGFITRWNAK  422 (423)
Q Consensus       372 ~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s------~D~~i~~W~~~  422 (423)
                      .+.+|+.......+..+.+-  ...-+.|+||++++.+.-      .|..|++||+.
T Consensus       341 ni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         341 NIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             ceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            79999887644433333332  345678999999986543      38899999964

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.23  E-value=3.2e-07  Score=79.92  Aligned_cols=291  Identities=11%  Similarity=0.146  Sum_probs=172.0

Q ss_pred             CCeEEEEecCCC--ccc-ccccCCcceEEEEEECCCCCEEEEEccC---CcEEEEEcCC--CceeEEeeecCCCCCeeEE
Q psy13076        110 GNSVIIRNIENP--AIS-DIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVN--KEHILKNEFHPIGGPIKDI  181 (423)
Q Consensus       110 ~~~~~i~~~~~~--~~~-~~~~~h~~~i~~~~~sp~~~~l~s~~~d---~~i~vwd~~~--~~~~~~~~~~~~~~~v~~v  181 (423)
                      +..+.+|++++.  ++. -.+..+....+-++|+|++++|.++..+   |.|--|.+..  +...........+.+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            456777777632  221 2233566788899999999999887654   7788887764  3332222333334455889


Q ss_pred             EECCCCCeEEEEEcCCceeeEEEeecC-Ccceec--ccCCC---------c-ceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076        182 AWSPDNQRMVVVGEGRERFGHVFMSET-GTSVGE--ISGQS---------K-PINSCDFKPSRPFRIITGSEDNTIAVFE  248 (423)
Q Consensus       182 ~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~---------~-~i~~~~~~~~~~~~~~s~s~d~~i~~~~  248 (423)
                      ++++++++++++....... .++..+. |.....  +..|.         . .+.+..+.|++.++++..-.-..|.+|+
T Consensus        95 svd~~g~~vf~AnY~~g~v-~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~  173 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSV-SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EECCCCCEEEEEEccCceE-EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence            9999999999987655432 2332221 221110  11111         1 2778889999998766666667888988


Q ss_pred             CCCceeeeecc---ccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCc-cceecccc------c-ccCCCeEEEEECC
Q psy13076        249 GPPFKFKMTKQ---EHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASA-DLVSELGN------P-AHKGGVYAVAWKP  316 (423)
Q Consensus       249 ~~~~~~~~~~~---~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~-~~~~~~~~------~-~~~~~i~~l~~~~  316 (423)
                      ....++.....   ......+.+.|+|+|++..... -+++|.+|..... ..+.+++.      . ....+..++..+|
T Consensus       174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence            66544332211   1223457899999999876666 5999999987763 22223221      0 1133567888999


Q ss_pred             CCCeEEEEe-CCCcEEEEecCCcceeeeeeeC---ceeEeeEEEEEecCcEEEEEeCCC-cEEEEecCCCCCceEEec--
Q psy13076        317 DGTQLLTAS-GDKTCKLWDIETKSAVSEFLMG---NQVEDQQVSCLWQGDYLLTVSLSG-FISYLDVNNPSTPIRVIK--  389 (423)
Q Consensus       317 ~~~~l~s~s-~d~~i~iwd~~~~~~i~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~-~i~~~~~~~~~~~~~~~~--  389 (423)
                      ||++|-++- ....|-+|.+........+...   .......+.+.+.|++|+++..++ .+.++........+..+.  
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~  333 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRY  333 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccc
Confidence            999997752 2446778877543221222111   112234566677899998887654 677776654333333221  


Q ss_pred             cCCCceeEEEec
Q psy13076        390 GHNKPITALALS  401 (423)
Q Consensus       390 ~h~~~v~~i~~s  401 (423)
                      ..-....||.|.
T Consensus       334 ~~~p~Pvcv~f~  345 (346)
T COG2706         334 AVVPEPVCVKFL  345 (346)
T ss_pred             cCCCCcEEEEEc
Confidence            233344555553

>KOG1912|consensus

Probab=99.22  E-value=1.5e-08  Score=95.81  Aligned_cols=403  Identities=15%  Similarity=0.177  Sum_probs=237.2

Q ss_pred             EEEE-eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCC------------CCeEEEecCCCceEEeecC
Q psy13076         11 SCLW-QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD------------RGTVFTGSHDGFITRWNAK   77 (423)
Q Consensus        11 ~~~~-~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~------------~~~l~sg~~D~~i~vW~~~   77 (423)
                      |++| +++++|-|+. ..|.+.|... -+.+++++-|...|+.+.|.|.            .-+||++.--|.|.+||+.
T Consensus        20 A~Dw~~~GLiAygsh-slV~VVDs~s-~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~   97 (1062)
T KOG1912|consen   20 AADWSPSGLIAYGSH-SLVSVVDSRS-LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV   97 (1062)
T ss_pred             ccccCccceEEEecC-ceEEEEehhh-hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence            5667 6788887664 4788889764 5678889999999999999762            2357888889999999998


Q ss_pred             CcceeecccCCCC-CCce-EEeeCCCC--CeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccC
Q psy13076         78 TEYIFATLPRTQR-GQPI-VLGGDPKG--KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDIS  152 (423)
Q Consensus        78 ~~~~~~~~~~~~~-~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d  152 (423)
                      .+.+..-+.++.. ...+ ++-..++.  .+++....+.+.+|+..+|.....+..-.....+..+.| |.+++..-+..
T Consensus        98 ~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~  177 (1062)
T KOG1912|consen   98 LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSK  177 (1062)
T ss_pred             hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccC
Confidence            8766555543322 1222 23223333  334445678899999999887777666556677789999 77888777777


Q ss_pred             CcEEEEEcCC-C------ceeE-EeeecC-------------CC-CC--------eeEEEECCCCCeEEEEEcCCceeeE
Q psy13076        153 GKVRIWDTVN-K------EHIL-KNEFHP-------------IG-GP--------IKDIAWSPDNQRMVVVGEGRERFGH  202 (423)
Q Consensus       153 ~~i~vwd~~~-~------~~~~-~~~~~~-------------~~-~~--------v~~v~~s~~~~~~~~~~~~~~~~~~  202 (423)
                      |.+-+-+... .      +... ......             .. .+        .-.++|+|.-+..+.+...++.  .
T Consensus       178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prel--l  255 (1062)
T KOG1912|consen  178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPREL--L  255 (1062)
T ss_pred             ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccce--E
Confidence            7776665321 1      1111 000000             00 00        1235678876666666655543  3


Q ss_pred             EEeecCCcceecccCCCcceeEEEEecCCC-eeEEEEeCCCeEEEEcCCCc--eeee-------eccc--c------ccC
Q psy13076        203 VFMSETGTSVGEISGQSKPINSCDFKPSRP-FRIITGSEDNTIAVFEGPPF--KFKM-------TKQE--H------SRF  264 (423)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~s~s~d~~i~~~~~~~~--~~~~-------~~~~--~------~~~  264 (423)
                      +++.+...++..+.-.......+++-|+.+ -.+.+.-.||.+.+|-.+..  ++..       .+.+  |      .-.
T Consensus       256 v~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~r  335 (1062)
T KOG1912|consen  256 VFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFR  335 (1062)
T ss_pred             EEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcc
Confidence            556665566666555555555667776543 23667778999998853221  1111       0000  0      001


Q ss_pred             eEEEEECCC-CCEEEEEEecCeEEEEECCCccceec----------------------------cc-ccccCCCeEEEEE
Q psy13076        265 VQAVRYSPS-GSHFASAGFDGKVFLYDGASADLVSE----------------------------LG-NPAHKGGVYAVAW  314 (423)
Q Consensus       265 i~~l~~s~~-g~~l~s~s~dg~i~vwd~~~~~~~~~----------------------------~~-~~~~~~~i~~l~~  314 (423)
                      +......|. ...++.--.+|.+.+|.+++++....                            +. ...|..+..+...
T Consensus       336 p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~  415 (1062)
T KOG1912|consen  336 PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRM  415 (1062)
T ss_pred             cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeec
Confidence            112223343 22333334566777777664332100                            00 0135555544444


Q ss_pred             CC-----------CC-------CeEEEEeCCCcEEEEecCCcceeeeeeeCc-eeEeeEEEEEecCc-EEEEEeC-----
Q psy13076        315 KP-----------DG-------TQLLTASGDKTCKLWDIETKSAVSEFLMGN-QVEDQQVSCLWQGD-YLLTVSL-----  369 (423)
Q Consensus       315 ~~-----------~~-------~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~-~~~~~~~~~~~~g~-~l~~~~~-----  369 (423)
                      +|           .+       .+++.|...|+|.++|+.++..-+++..+. -++.    ..|-|. .+++.+.     
T Consensus       416 ~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~Vkg----leW~g~sslvSfsys~~n~  491 (1062)
T KOG1912|consen  416 RPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKG----LEWLGNSSLVSFSYSHVNS  491 (1062)
T ss_pred             ccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceee----eeeccceeEEEeeeccccc
Confidence            33           12       367889999999999999886654443221 1111    112222 2332221     


Q ss_pred             -----CCcEEEEecCCCCCceEEec----cCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        370 -----SGFISYLDVNNPSTPIRVIK----GHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       370 -----~~~i~~~~~~~~~~~~~~~~----~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                           -+.+.+-|++++..  +.++    .-+.+|+.+..|.-++||+..=.|.-+.+||++|
T Consensus       492 ~sg~vrN~l~vtdLrtGls--k~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt  552 (1062)
T KOG1912|consen  492 ASGGVRNDLVVTDLRTGLS--KRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT  552 (1062)
T ss_pred             cccceeeeEEEEEcccccc--cccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence                 23456667777543  2233    3456899999999999999999999999999854

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.6e-08  Score=94.12  Aligned_cols=178  Identities=11%  Similarity=0.121  Sum_probs=102.0

Q ss_pred             EEEECCCCCEEEEEcc-----CCcEEEEEcCCCce-eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec--
Q psy13076        136 VAKYSPSGFYIASGDI-----SGKVRIWDTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE--  207 (423)
Q Consensus       136 ~~~~sp~~~~l~s~~~-----d~~i~vwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~--  207 (423)
                      ..+|+|||+.||..+.     +-.+.+|++..+.. ................+|+|||+.++..+...+. ..++...  
T Consensus       235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~  313 (428)
T PRK01029        235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQID  313 (428)
T ss_pred             ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC-ceEEEEECc
Confidence            4678999988876442     22344466654210 0011111111234567999999998887653322 2333322  


Q ss_pred             -CCcceecccCCCcceeEEEEecCCCeeEEEEeCC--CeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe--
Q psy13076        208 -TGTSVGEISGQSKPINSCDFKPSRPFRIITGSED--NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF--  282 (423)
Q Consensus       208 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d--~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~--  282 (423)
                       .+.....+......+....|+|++..++.++..+  ..|.+|+....+..... .....+....|+|||++|+..+.  
T Consensus       314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~  392 (428)
T PRK01029        314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNS  392 (428)
T ss_pred             ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCC
Confidence             1222333444444567789999998755555443  36888887655443222 22334567899999998875443  


Q ss_pred             -cCeEEEEECCCccceecccccccCCCeEEEEECCCC
Q psy13076        283 -DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG  318 (423)
Q Consensus       283 -dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~  318 (423)
                       ...|+++|+..++.. .+.  ...+.+...+|+|-.
T Consensus       393 g~~~L~~vdl~~g~~~-~Lt--~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        393 NESELYLISLITKKTR-KIV--IGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCceEEEEECCCCCEE-Eee--cCCCcccCceecCCC
Confidence             346888898766543 232  133456678888753

>KOG2314|consensus

Probab=99.21  E-value=3.4e-08  Score=90.13  Aligned_cols=321  Identities=19%  Similarity=0.296  Sum_probs=188.2

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecC-----------CCceEEeec
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH-----------DGFITRWNA   76 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~-----------D~~i~vW~~   76 (423)
                      -.|..+|-|.||++-..-| |.+|=-.. ...++.|- |. .|.-+.|||..++|+|-|-           ...++|||+
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~-f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGES-FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCcc-HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            3455566799999987765 55884221 11222222 43 6889999999999999652           367899999


Q ss_pred             CCcceeecccCC--CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc---
Q psy13076         77 KTEYIFATLPRT--QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI---  151 (423)
Q Consensus        77 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~---  151 (423)
                      .+|.+.+.+...  .....-.+.++.+++.++...++.+.|+....-.+..--.-....|....|+|.+..||--..   
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            999988887653  222334578999999999988899999875542222222222356677779998877774332   


Q ss_pred             --CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee--------eEEEee-cCCcceecccCCCc
Q psy13076        152 --SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF--------GHVFMS-ETGTSVGEISGQSK  220 (423)
Q Consensus       152 --d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~  220 (423)
                        -..+-+-.+.++..+....+....  =..+.|-.+|.+|++--+-..+.        ..++.. +..-++..+ .-..
T Consensus       370 ~~parvtL~evPs~~~iRt~nlfnVs--DckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke  446 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIRTKNLFNVS--DCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKE  446 (698)
T ss_pred             CCcceEEEEecCccceeeeccceeee--ccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecch
Confidence              234555555555444333332211  12467888888877643211110        011111 111111111 1223


Q ss_pred             ceeEEEEecCCC-eeEEEEeC-CCeEEEEcCCC--ceeeeeccccccCeEEEEECCCCCEEEEEE---ecCeEEEEECCC
Q psy13076        221 PINSCDFKPSRP-FRIITGSE-DNTIAVFEGPP--FKFKMTKQEHSRFVQAVRYSPSGSHFASAG---FDGKVFLYDGAS  293 (423)
Q Consensus       221 ~i~~~~~~~~~~-~~~~s~s~-d~~i~~~~~~~--~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s---~dg~i~vwd~~~  293 (423)
                      ++...+|-|.++ +.+++|.. ..++..|....  .+..+...-.....+.+.|+|.|++++.+.   ..|.+..+|+.-
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            566778888775 44444433 34566665432  111111122234567899999999987765   357888998764


Q ss_pred             ccceecccccccCCCeEEEEECCCCCeEEEEeCCCc------EEEEecCC
Q psy13076        294 ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT------CKLWDIET  337 (423)
Q Consensus       294 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~------i~iwd~~~  337 (423)
                      .... ....+.|. ..+.+-|+|.|+|+++++.-+.      -++|+++.
T Consensus       527 a~~k-~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  527 ADLK-DTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             hhhh-hccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            2221 12222343 3567999999999999876543      44565543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=1.5e-08  Score=95.72  Aligned_cols=222  Identities=15%  Similarity=0.158  Sum_probs=127.9

Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCE---EEEEccCC--cEEEEEcCCCceeEEeeecCCCCCeeEEEECCC
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFY---IASGDISG--KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD  186 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~---l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  186 (423)
                      .+.+.+.+...... ++.....+.+=+|+|||+.   +++...++  .|.+.++..++......+   .+.....+|+||
T Consensus       166 ~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSPD  241 (428)
T PRK01029        166 ELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSPR  241 (428)
T ss_pred             eEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECCC
Confidence            34455555444333 3334445566799999974   22444444  466667766554322222   233456799999


Q ss_pred             CCeEEEEEcCC---ceeeEEEeecCC--cceeccc-CCCcceeEEEEecCCCeeEEEEeCCCeEEEE--cCCC-ceeeee
Q psy13076        187 NQRMVVVGEGR---ERFGHVFMSETG--TSVGEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVF--EGPP-FKFKMT  257 (423)
Q Consensus       187 ~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~--~~~~-~~~~~~  257 (423)
                      |+.++.+....   +.+...+....+  .....+. ..........|+|++..++.++..++...+|  +... ......
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~  321 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL  321 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence            99998876432   222222333321  1122222 2223345679999998766666566654444  3321 111112


Q ss_pred             ccccccCeEEEEECCCCCEEEEEEec---CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC---CCcEE
Q psy13076        258 KQEHSRFVQAVRYSPSGSHFASAGFD---GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG---DKTCK  331 (423)
Q Consensus       258 ~~~~~~~i~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~---d~~i~  331 (423)
                      +......+....|+|||+.|+..+.+   ..|.+||..+++.. .+..  ....+....|+|||+.|+..+.   ...|.
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTT--SPENKESPSWAIDSLHLVYSAGNSNESELY  398 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccC--CCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            22233456778999999988876643   36999999887653 3322  2234577999999998875433   34688


Q ss_pred             EEecCCcce
Q psy13076        332 LWDIETKSA  340 (423)
Q Consensus       332 iwd~~~~~~  340 (423)
                      ++|+..++.
T Consensus       399 ~vdl~~g~~  407 (428)
T PRK01029        399 LISLITKKT  407 (428)
T ss_pred             EEECCCCCE
Confidence            888876653

>KOG0309|consensus

Probab=99.21  E-value=1.8e-10  Score=107.86  Aligned_cols=285  Identities=17%  Similarity=0.254  Sum_probs=177.4

Q ss_pred             eEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCC--CeEEEEEcCCceeeEEEeec--C
Q psy13076        133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN--QRMVVVGEGRERFGHVFMSE--T  208 (423)
Q Consensus       133 ~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~~~~~~~~~~~~~~~~~~~--~  208 (423)
                      .+..+..+|.|+-+|.++.-|- .+-|+...-.-.....+.-+-.|-.+.|+|..  .+-++....+..+  +|...  .
T Consensus        26 ~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai--iwnlA~ss  102 (1081)
T KOG0309|consen   26 GFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI--IWNLAKSS  102 (1081)
T ss_pred             cccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh--hhhhhcCC
Confidence            3455667898988888887764 44565443221122222223456677787653  3334433333322  22222  2


Q ss_pred             Cccee-cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce-eeeeccccccCeEEEEECCCCCEEEEEEecCeE
Q psy13076        209 GTSVG-EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV  286 (423)
Q Consensus       209 ~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i  286 (423)
                      ...+. .+-+|.+.++.+.|+|..+-.+++++.|-.+..||.+... .......-....+.++|+-....+.+.+..+.|
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i  182 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI  182 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence            22332 2458889999999999999999999999999999975322 222222333445678998877777777788889


Q ss_pred             EEEECCCccc-eecccccccCCCeEEEEECCC-CCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEe--cCc
Q psy13076        287 FLYDGASADL-VSELGNPAHKGGVYAVAWKPD-GTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGD  362 (423)
Q Consensus       287 ~vwd~~~~~~-~~~~~~~~~~~~i~~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~--~g~  362 (423)
                      ++||.+.+.. +..+  ++|...+..++|... ...+.+++.|++|+.||........+...........-...|  +|-
T Consensus       183 ~vwd~r~gs~pl~s~--K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~  260 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSL--KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY  260 (1081)
T ss_pred             EEEeccCCCcceEEe--cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence            9999987663 3344  347778888888653 356789999999999998654322221111111100001111  221


Q ss_pred             EEE---------EEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecC--------CCC--eEEEecCCCcEEEeeCC
Q psy13076        363 YLL---------TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP--------DRG--TVFTGSHDGFITRWNAK  422 (423)
Q Consensus       363 ~l~---------~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp--------~~~--~l~s~s~D~~i~~W~~~  422 (423)
                      ++.         .-..+.....||..+...+++.+.||.+.|...-|-.        |.+  .|+|=|.|.++|+|-+.
T Consensus       261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence            111         1222334455777778889999999999998877743        222  58999999999999653

>KOG2041|consensus

Probab=99.20  E-value=1.4e-07  Score=88.67  Aligned_cols=402  Identities=14%  Similarity=0.221  Sum_probs=217.6

Q ss_pred             ccceeeEEEEeCCEEEEEeccceEEEEeccCCCCc--------------eeecccccCceeEEEEeCCCCeEEEecCCCc
Q psy13076          5 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP--------------IRVIKGHNKPITALALSPDRGTVFTGSHDGF   70 (423)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~--------------~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~   70 (423)
                      +.=++++-.+..+|||+|+.||.+.++.+.+...-              -++|+||++.|.-+.|+.+.+.|-|...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            33455665668999999999999999987643221              1468899999999999999999999999999


Q ss_pred             eEEeecCCccee-ecccCCCCCCceEEeeCCCCCeEEE-ecCCeEEEEecCCCcc-cccccCCcceEEEEEECCCCCEEE
Q psy13076         71 ITRWNAKTEYIF-ATLPRTQRGQPIVLGGDPKGKNFLY-TNGNSVIIRNIENPAI-SDIYTEHSCAVNVAKYSPSGFYIA  147 (423)
Q Consensus        71 i~vW~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~-~~~~~~h~~~i~~~~~sp~~~~l~  147 (423)
                      |.||=+-.+.=. .++..-.......+++..+|..+.. -.+..+++-.++..++ -+.+.+.  -...+.|+||.+.++
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQAL  172 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHHH
Confidence            999977554321 1222112233445678888865433 3444555555443321 1223322  123578999999988


Q ss_pred             EEccCCcEEEEEcCCC-------ceeEE--eeecCCCCCeeEEEEC--------CCCCeEEEEEcCCceeeEEEeecCCc
Q psy13076        148 SGDISGKVRIWDTVNK-------EHILK--NEFHPIGGPIKDIAWS--------PDNQRMVVVGEGRERFGHVFMSETGT  210 (423)
Q Consensus       148 s~~~d~~i~vwd~~~~-------~~~~~--~~~~~~~~~v~~v~~s--------~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (423)
                      .+-..|.+.+||....       .+...  ..+...+..+-.+.|.        ||...++++-.. ++.......+  .
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n-Gr~QiMR~eN--D  249 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN-GRMQIMRSEN--D  249 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC-ceehhhhhcC--C
Confidence            8889999999996421       11000  1111112234445543        455555554332 2211111101  1


Q ss_pred             ceecccCCCcceeEEEEecCCCeeEEEEeCCC---------eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE
Q psy13076        211 SVGEISGQSKPINSCDFKPSRPFRIITGSEDN---------TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG  281 (423)
Q Consensus       211 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~---------~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s  281 (423)
                      ....+....-.+....|++++.. ++.++.+.         .+..|. +-.+...+++.....|+.++|...|-.+|.+ 
T Consensus       250 ~~Pvv~dtgm~~vgakWnh~G~v-LAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-  326 (1189)
T KOG2041|consen  250 PEPVVVDTGMKIVGAKWNHNGAV-LAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-  326 (1189)
T ss_pred             CCCeEEecccEeecceecCCCcE-EEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence            11111122235677889999987 55554322         233332 2223333445555668888887777655544 


Q ss_pred             ecCeEEE--------------------------------EECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCc
Q psy13076        282 FDGKVFL--------------------------------YDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT  329 (423)
Q Consensus       282 ~dg~i~v--------------------------------wd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~  329 (423)
                      .|+.|++                                ||.++.+...+.     -....+++|..+--.|+.-..|+.
T Consensus       327 vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~-----V~~~~~~a~~~ehCvL~~~~d~~~  401 (1189)
T KOG2041|consen  327 VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT-----VTHFENMAFYREHCVLINRQDDGV  401 (1189)
T ss_pred             ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh-----hcceeehheecccEEEEeccccCC
Confidence            3555543                                333322211100     112346777766667777777776


Q ss_pred             EEEEec-CCcceeeeee----eCc--eeEeeEEE---EEecCcEEEEEeCCCcEEEEecCCCC-----------------
Q psy13076        330 CKLWDI-ETKSAVSEFL----MGN--QVEDQQVS---CLWQGDYLLTVSLSGFISYLDVNNPS-----------------  382 (423)
Q Consensus       330 i~iwd~-~~~~~i~~~~----~~~--~~~~~~~~---~~~~g~~l~~~~~~~~i~~~~~~~~~-----------------  382 (423)
                      +.=++. .+...+..+.    .+.  ..+...+.   +.-+|..++.+|.+. +.+|....+.                 
T Consensus       402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~-~~iWhy~~pK~~s~l~~~k~rkegr~h  480 (1189)
T KOG2041|consen  402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEER-YFIWHYVLPKFNSVLAGVKIRKEGRFH  480 (1189)
T ss_pred             CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEecccc-EEEEEEeccchhhhhhhhhhccccccc
Confidence            665522 1111110000    000  00111111   112566666666554 3344332110                 


Q ss_pred             --------------CceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        383 --------------TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       383 --------------~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                                    -..+++.|-.+||-.++.+  +++|+.+-..|.|.-+++.
T Consensus       481 ~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~  532 (1189)
T KOG2041|consen  481 GDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLN  532 (1189)
T ss_pred             CCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEec
Confidence                          0123456677788888777  5677777777888777653

>KOG4547|consensus

Probab=99.20  E-value=3.4e-09  Score=97.25  Aligned_cols=212  Identities=14%  Similarity=0.164  Sum_probs=138.3

Q ss_pred             CCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC-cccccccCCcceEE
Q psy13076         57 PDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP-AISDIYTEHSCAVN  135 (423)
Q Consensus        57 ~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~h~~~i~  135 (423)
                      |-..++|....||.+|+||+.+.++...+.+...-                ++.+....|.+.-. ...+...-  ..  
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~----------------s~t~~~~~w~L~~~~s~~k~~~~--~~--   62 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL----------------SGTCTYTKWGLSADYSPMKWLSL--EK--   62 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhc----------------cCcceeEEEEEEeccchHHHHhH--HH--
Confidence            45678999999999999999988776655432211                11112222322100 00000000  00  


Q ss_pred             EEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecc
Q psy13076        136 VAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI  215 (423)
Q Consensus       136 ~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (423)
                      .-.-+.+-..++-|-..|.|.+|++..++......-..+.++|+++.++.+-.                           
T Consensus        63 ~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---------------------------  115 (541)
T KOG4547|consen   63 AKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---------------------------  115 (541)
T ss_pred             HhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC---------------------------
Confidence            00112233456667778889999987776555544455556666655543322                           


Q ss_pred             cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc
Q psy13076        216 SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD  295 (423)
Q Consensus       216 ~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~  295 (423)
                                        ++.+++.|..+..|+...........+.+..+.+++.+|||+.+++|+  ++|++||.++.+
T Consensus       116 ------------------ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke  175 (541)
T KOG4547|consen  116 ------------------CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE  175 (541)
T ss_pred             ------------------ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce
Confidence                              366777788888887766666666677777889999999999999886  689999999999


Q ss_pred             ceecccccccCCCeEEEEECCC-----CCeEEE-EeCCCcEEEEecCC
Q psy13076        296 LVSELGNPAHKGGVYAVAWKPD-----GTQLLT-ASGDKTCKLWDIET  337 (423)
Q Consensus       296 ~~~~~~~~~~~~~i~~l~~~~~-----~~~l~s-~s~d~~i~iwd~~~  337 (423)
                      .+.++  .+|.+.|++++|-.+     |.++++ ...+.-+.+|-+..
T Consensus       176 vv~~f--tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  176 VVITF--TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEEe--cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            98888  479999999999776     666555 45566677786543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.18  E-value=2.3e-07  Score=86.99  Aligned_cols=308  Identities=15%  Similarity=0.140  Sum_probs=171.5

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC--CCC
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ--RGQ   92 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~--~~~   92 (423)
                      +|+.+..++.+|.|.-+|..++.... .++-......+.+  .++..++.++.|+.+..+|.++++++-......  ...
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W-~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  140 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLW-RVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP  140 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEee-eecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence            67888889999999999987654322 2221111111222  246778888999999999999987754332111  011


Q ss_pred             ceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEE-ECC--CCCEEEEEccCCcEEEEEcCCCceeEEe
Q psy13076         93 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAK-YSP--SGFYIASGDISGKVRIWDTVNKEHILKN  169 (423)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~-~sp--~~~~l~s~~~d~~i~vwd~~~~~~~~~~  169 (423)
                      ++.    .++..++...+..+..+|.++++....+......+.... -+|  .+..++.+..++.+..+|.++++..+..
T Consensus       141 p~v----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       141 PLV----ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CEE----ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence            111    123444445566788888888877655443221111000 011  1246677778888888888777655432


Q ss_pred             eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC
Q psy13076        170 EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG  249 (423)
Q Consensus       170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~  249 (423)
                      ....           |.+..-+         ..+.         ..  ...++    +.  +. .++.++.++.+..+|.
T Consensus       217 ~~~~-----------~~g~~~~---------~~~~---------~~--~~~p~----~~--~~-~vy~~~~~g~l~a~d~  258 (377)
T TIGR03300       217 RVAL-----------PKGRTEL---------ERLV---------DV--DGDPV----VD--GG-QVYAVSYQGRVAALDL  258 (377)
T ss_pred             cccc-----------CCCCCch---------hhhh---------cc--CCccE----EE--CC-EEEEEEcCCEEEEEEC
Confidence            2110           0000000         0000         00  00000    11  12 3556677888888887


Q ss_pred             CCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCc
Q psy13076        250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT  329 (423)
Q Consensus       250 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~  329 (423)
                      .+.+....... .. .....  ..+..++.++.||.+..+|..+++.+.+.... ..........  .+..|++++.+|.
T Consensus       259 ~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~g~~l~~~~~~G~  331 (377)
T TIGR03300       259 RSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL-KYRQLTAPAV--VGGYLVVGDFEGY  331 (377)
T ss_pred             CCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc-cCCccccCEE--ECCEEEEEeCCCE
Confidence            66554443321 11 11111  24667888889999999999998876544211 1111122222  4668889999999


Q ss_pred             EEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEE
Q psy13076        330 CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL  376 (423)
Q Consensus       330 i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~  376 (423)
                      +.++|..+++.+.++......  ...+....++.|..++.+|.++.+
T Consensus       332 l~~~d~~tG~~~~~~~~~~~~--~~~sp~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       332 LHWLSREDGSFVARLKTDGSG--IASPPVVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEECCCCCEEEEEEcCCCc--cccCCEEECCEEEEEeCCceEEEe
Confidence            999999999988776543311  011112245568888888888654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190|consensus

Probab=99.17  E-value=1.7e-10  Score=104.68  Aligned_cols=292  Identities=18%  Similarity=0.251  Sum_probs=179.1

Q ss_pred             ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076         42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP  121 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (423)
                      .|.||...|..++--.+..-++|+++|.+||+|.++..-         .                          ...+.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg---------D--------------------------~~~ts  774 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG---------D--------------------------EIGTS  774 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc---------C--------------------------ccccc
Confidence            467999999988877777789999999999999986420         0                          02244


Q ss_pred             cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        122 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       122 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                      .++.+|+.|+.+|+.+.|-.+.++++++  |+.|.+||---+..+.            .+.+.|....            
T Consensus       775 aCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~La------------q~~dapk~~a------------  828 (1034)
T KOG4190|consen  775 ACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLA------------QMEDAPKEGA------------  828 (1034)
T ss_pred             eeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhH------------hhhcCcccCC------------
Confidence            5667889999999999999999999877  6899999953322111            1112221100            


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce--eeeecc---ccccCeEEEEECCCCCE
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK--FKMTKQ---EHSRFVQAVRYSPSGSH  276 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~--~~~~~~---~~~~~i~~l~~s~~g~~  276 (423)
                                       ...|.++. +-+.+..++.|+...+++++|.+...  ..+...   ..+..++++++.|.|..
T Consensus       829 -----------------~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~  890 (1034)
T KOG4190|consen  829 -----------------GGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNK  890 (1034)
T ss_pred             -----------------CceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcch
Confidence                             00011110 01223345566788888998865432  222222   22345789999999999


Q ss_pred             EEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEE-EecCCcceeeeeeeCceeEeeEE
Q psy13076        277 FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKL-WDIETKSAVSEFLMGNQVEDQQV  355 (423)
Q Consensus       277 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~i-wd~~~~~~i~~~~~~~~~~~~~~  355 (423)
                      +++|=..|.|.+.|.++|+.+..+.- . .-....++ .|..+.|+....|.++-+ |-...+.+..+..  .+....-+
T Consensus       891 lAa~LSnGci~~LDaR~G~vINswrp-m-ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k--pppepahf  965 (1034)
T KOG4190|consen  891 LAAALSNGCIAILDARNGKVINSWRP-M-ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK--PPPEPAHF  965 (1034)
T ss_pred             hhHHhcCCcEEEEecCCCceeccCCc-c-cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC--CCCcchhh
Confidence            99999999999999999997765531 1 11111222 366677887777888888 8766654322221  11110000


Q ss_pred             EEEecCcEEEEEeCCCcEEEEecCC---CCCceEEe--ccCCCceeEEEecCCCCeEEEecCCCcEEE
Q psy13076        356 SCLWQGDYLLTVSLSGFISYLDVNN---PSTPIRVI--KGHNKPITALALSPDRGTVFTGSHDGFITR  418 (423)
Q Consensus       356 ~~~~~g~~l~~~~~~~~i~~~~~~~---~~~~~~~~--~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~  418 (423)
                       ...-|-.++++...+.+.+|.-..   .+..+.++  ....+..++++--|-+.-++.|..-|.|++
T Consensus       966 -lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  966 -LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             -hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence             011345566665555555553211   01111122  234456888888898888888888888865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.15  E-value=1.1e-07  Score=85.37  Aligned_cols=143  Identities=20%  Similarity=0.240  Sum_probs=96.0

Q ss_pred             CCcceEEEEEECCCCCEEEEEccCC-cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076        129 EHSCAVNVAKYSPSGFYIASGDISG-KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      +|...|.-.++..+++-++.|..|| .+-++|...++...   +...-+.|.++..+|+|+.++++.+.           
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr---~e~~lg~I~av~vs~dGK~~vvaNdr-----------  422 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR---IEKDLGNIEAVKVSPDGKKVVVANDR-----------  422 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE---eeCCccceEEEEEcCCCcEEEEEcCc-----------
Confidence            6777788888888888889999998 89999988765322   22223678899999999987765322           


Q ss_pred             CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC---
Q psy13076        208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG---  284 (423)
Q Consensus       208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg---  284 (423)
                                                        ..|.+.|..+.+....-+....-|+..+|+|+++++|-+=.+|   
T Consensus       423 ----------------------------------~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~t  468 (668)
T COG4946         423 ----------------------------------FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYT  468 (668)
T ss_pred             ----------------------------------eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceee
Confidence                                              1122222222222222222334578899999999999887776   


Q ss_pred             -eEEEEECCCccceecccccccCCCeEEEEECCCCCeEE
Q psy13076        285 -KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL  322 (423)
Q Consensus       285 -~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  322 (423)
                       .|+++|+..++....-...+|.   .+-+|.|++++|-
T Consensus       469 q~Iklydm~~~Kiy~vTT~ta~D---fsPaFD~d~ryLY  504 (668)
T COG4946         469 QSIKLYDMDGGKIYDVTTPTAYD---FSPAFDPDGRYLY  504 (668)
T ss_pred             eeEEEEecCCCeEEEecCCcccc---cCcccCCCCcEEE
Confidence             5899999887765433322332   5678999998653

>KOG2041|consensus

Probab=99.10  E-value=5.4e-08  Score=91.43  Aligned_cols=246  Identities=13%  Similarity=0.245  Sum_probs=151.3

Q ss_pred             cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc
Q psy13076         47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI  126 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  126 (423)
                      +....|++|+.+..+++-||.||.+||-.+.+..--.    ...+  ++                     ...+-..-++
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~----~~~g--la---------------------a~snLsmNQt   66 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDL----NKSG--LA---------------------AASNLSMNQT   66 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcc----cccc--cc---------------------cccccchhhh
Confidence            4577899999999999999999999999876531100    0000  00                     0112234457


Q ss_pred             ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEee
Q psy13076        127 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS  206 (423)
Q Consensus       127 ~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~  206 (423)
                      +.||+..|..+.|+.+.+.+-|.+.+|.|.+|-+.++.......-..-...|.+++|..||..+..+-.+....   .-.
T Consensus        67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI---VGs  143 (1189)
T KOG2041|consen   67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI---VGS  143 (1189)
T ss_pred             hccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE---EEe
Confidence            89999999999999999999999999999999987654211000001124588999999998887765443221   111


Q ss_pred             cCCccee--cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-ceeeee----------ccccccCeEEEEE---
Q psy13076        207 ETGTSVG--EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKFKMT----------KQEHSRFVQAVRY---  270 (423)
Q Consensus       207 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-~~~~~~----------~~~~~~~i~~l~~---  270 (423)
                      -.|..+.  ++++.  ....+.|+++... ++.+-.+|.+.+||... +..+..          .......|..+.|   
T Consensus       144 vdGNRIwgKeLkg~--~l~hv~ws~D~~~-~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g  220 (1189)
T KOG2041|consen  144 VDGNRIWGKELKGQ--LLAHVLWSEDLEQ-ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTG  220 (1189)
T ss_pred             eccceecchhcchh--eccceeecccHHH-HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccC
Confidence            1222221  12221  2346778887654 44455678888887532 111110          1111112333333   


Q ss_pred             -----CCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCC
Q psy13076        271 -----SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       271 -----s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                           -||-..|+.+-..|.+.+...........+..   ...+.++.|+|+|..|+.++.+.
T Consensus       221 ~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  221 PYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             ccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcc
Confidence                 35777888888888887754433322222211   24578899999999999998764

>KOG1064|consensus

Probab=99.10  E-value=5.1e-10  Score=114.23  Aligned_cols=200  Identities=17%  Similarity=0.277  Sum_probs=140.0

Q ss_pred             cccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCc
Q psy13076         43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA  122 (423)
Q Consensus        43 ~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  122 (423)
                      ++-|-..|.++.-+|..++.+||+.||.|++|....+.                               .+..|+.    
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~-------------------------------~v~~~rt---- 2248 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ-------------------------------QVVCFRT---- 2248 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCC-------------------------------eEEEeec----
Confidence            44455677777778888999999999999999875432                               1222221    


Q ss_pred             ccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeE
Q psy13076        123 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH  202 (423)
Q Consensus       123 ~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~  202 (423)
                           .|. ..|+.++|+.+|.-+..+..||.+-+|... .+.....+.  +.....+..|-.  .              
T Consensus      2249 -----~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc--hnk~~~Df~Fi~--s-------------- 2303 (2439)
T KOG1064|consen 2249 -----AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC--HNKALSDFRFIG--S-------------- 2303 (2439)
T ss_pred             -----cCc-chhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc--CCccccceeeee--h--------------
Confidence                 122 567788899999999999999999999975 222221111  111122222211  0              


Q ss_pred             EEeecCCcceecccCCCcceeEEEEecCCCeeEEEE---eCCCeEEEEcCC-CceeeeeccccccCeEEEEECCCCCEEE
Q psy13076        203 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG---SEDNTIAVFEGP-PFKFKMTKQEHSRFVQAVRYSPSGSHFA  278 (423)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~---s~d~~i~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~g~~l~  278 (423)
                                                     .++++   +.++.+.+||.. +.........|...++++++-|.-++|+
T Consensus      2304 -------------------------------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2304 -------------------------------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred             -------------------------------hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEE
Confidence                                           12222   356778889842 1222223378999999999999999999


Q ss_pred             EEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeee
Q psy13076        279 SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       279 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~  345 (423)
                      +|+.+|.|++||.+..+++.+++.           ++ ...+|++++..|.++||++....++.++.
T Consensus      2353 sggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             ecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            999999999999999887766632           45 66789999999999999999887777664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.09  E-value=7.1e-07  Score=83.63  Aligned_cols=298  Identities=14%  Similarity=0.148  Sum_probs=161.4

Q ss_pred             CCeEEEecCCCceEEeecCCcceeecccCCC--CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEE
Q psy13076         59 RGTVFTGSHDGFITRWNAKTEYIFATLPRTQ--RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV  136 (423)
Q Consensus        59 ~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~  136 (423)
                      +..++.++.++.|.-+|.++++.+=......  ...+ ++   .++..++...+..+..++.++++......... .+.+
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p-~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~  139 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGV-GA---DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLS  139 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccce-EE---cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeec
Confidence            5678889999999999999887653322111  1111 11   12334444455677778887777665443221 1211


Q ss_pred             EEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc
Q psy13076        137 AKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS  216 (423)
Q Consensus       137 ~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (423)
                      .... .+..++.+..++.+..+|.++++..+......   +...+  .......+                         
T Consensus       140 ~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~---~~~~~--~~~~sp~~-------------------------  188 (377)
T TIGR03300       140 PPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVT---PALTL--RGSASPVI-------------------------  188 (377)
T ss_pred             CCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCC---Cceee--cCCCCCEE-------------------------
Confidence            1000 24466667778999999988877665433221   10000  00000000                         


Q ss_pred             CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccc-----c--c---Ce-EEEEECCCCCEEEEEEecCe
Q psy13076        217 GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH-----S--R---FV-QAVRYSPSGSHFASAGFDGK  285 (423)
Q Consensus       217 ~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~-----~--~---~i-~~l~~s~~g~~l~s~s~dg~  285 (423)
                                 . ++  .++.+..++.+..+|....+........     .  .   .+ ....+  .+..+..++.+|.
T Consensus       189 -----------~-~~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~  252 (377)
T TIGR03300       189 -----------A-DG--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGR  252 (377)
T ss_pred             -----------E-CC--EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCE
Confidence                       0 00  1223333344444443322222111000     0  0   00 01111  2457777888999


Q ss_pred             EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeee-eCceeEeeEEEEEecCcEE
Q psy13076        286 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFL-MGNQVEDQQVSCLWQGDYL  364 (423)
Q Consensus       286 i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~-~~~~~~~~~~~~~~~g~~l  364 (423)
                      +..+|.++++.......    .....++  ..+..+..++.|+.+..+|..+++.+-+.. .....   .-+....+..+
T Consensus       253 l~a~d~~tG~~~W~~~~----~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~---~ssp~i~g~~l  323 (377)
T TIGR03300       253 VAALDLRSGRVLWKRDA----SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ---LTAPAVVGGYL  323 (377)
T ss_pred             EEEEECCCCcEEEeecc----CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCc---cccCEEECCEE
Confidence            99999999987655431    1112222  245677778899999999999987664431 11111   01112257788


Q ss_pred             EEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEe
Q psy13076        365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW  419 (423)
Q Consensus       365 ~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W  419 (423)
                      .+++.+|.++.+|..+++. +..+..+..++..--...+ +.|+.++.||.|..+
T Consensus       324 ~~~~~~G~l~~~d~~tG~~-~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       324 VVGDFEGYLHWLSREDGSF-VARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEeCCCEEEEEECCCCCE-EEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence            8999999999999877543 4455545444333222224 457788999998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.07  E-value=2.7e-07  Score=96.18  Aligned_cols=256  Identities=12%  Similarity=0.114  Sum_probs=146.6

Q ss_pred             EEEEeCC-CCeEEEecCCCceEEeecCCcceeecccC-CC------------CCCceEEeeCCCCCeEEEec--CCeEEE
Q psy13076         52 ALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPR-TQ------------RGQPIVLGGDPKGKNFLYTN--GNSVII  115 (423)
Q Consensus        52 ~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~i  115 (423)
                      .+++++. +.++++-+..+.|+++|.....+. .+.. ..            -..+.-+..+++++.++.+.  +..+++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~-~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIV-QIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCEEE-EEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            5788874 668888889999999998754332 2211 11            11234456666666444432  356777


Q ss_pred             EecCCCcccccc---------cCC-------cceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCe
Q psy13076        116 RNIENPAISDIY---------TEH-------SCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI  178 (423)
Q Consensus       116 ~~~~~~~~~~~~---------~~h-------~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v  178 (423)
                      .++.++......         .+-       -..-+.++|+| ++...++...++.|++||..++....           
T Consensus       651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-----------  719 (1057)
T PLN02919        651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-----------  719 (1057)
T ss_pred             EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-----------
Confidence            776655432110         110       12235789999 56666777778899999976543210           


Q ss_pred             eEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee-
Q psy13076        179 KDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT-  257 (423)
Q Consensus       179 ~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~-  257 (423)
                          |..+|.....  .             +..  ...........++++|++..+.++-+.++.|++|+......... 
T Consensus       720 ----~~G~G~~~~~--~-------------g~~--~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        720 ----FSGDGYERNL--N-------------GSS--GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             ----EecCCccccC--C-------------CCc--cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence                1111100000  0             000  00001122344556665554444555556666665432211100 


Q ss_pred             ------------c--------cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc-----------cccC
Q psy13076        258 ------------K--------QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN-----------PAHK  306 (423)
Q Consensus       258 ------------~--------~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----------~~~~  306 (423)
                                  .        .........++++++|..+++-+.++.|++||..++........           .+.-
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l  858 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL  858 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence                        0        00112245789999999888888999999999877654322110           1122


Q ss_pred             CCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076        307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA  340 (423)
Q Consensus       307 ~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~  340 (423)
                      ....+++++++|+.+++-+.++.|++||+.+++.
T Consensus       859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            3567899999999999999999999999988765

>KOG3914|consensus

Probab=99.07  E-value=4.1e-09  Score=92.41  Aligned_cols=103  Identities=20%  Similarity=0.247  Sum_probs=79.5

Q ss_pred             CCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCe
Q psy13076        241 DNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ  320 (423)
Q Consensus       241 d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~  320 (423)
                      ...+.+|....+. ....-+|-..++.++++||+++++++..|..|++-.......+..+-. +|+.-|..++.-+ ++.
T Consensus       131 ~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-GH~eFVS~isl~~-~~~  207 (390)
T KOG3914|consen  131 VYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-GHKEFVSTISLTD-NYL  207 (390)
T ss_pred             ceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-ccHhheeeeeecc-Cce
Confidence            3445555533322 223346788899999999999999999999999987766665655543 7999999999875 456


Q ss_pred             EEEEeCCCcEEEEecCCcceeeeeee
Q psy13076        321 LLTASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       321 l~s~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      |+|+|.|+++++||+.+++++.++..
T Consensus       208 LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  208 LLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             eeecCCCCcEEEEecccCCcccccch
Confidence            89999999999999999999877643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.06  E-value=2.8e-05  Score=80.02  Aligned_cols=313  Identities=18%  Similarity=0.225  Sum_probs=172.5

Q ss_pred             cceeeEEEE--eCCEEEEEeccceEEEEeccC--------------CCCcee--------eccc----------------
Q psy13076          6 EDQQVSCLW--QGDYLLTVSLSGFISYLDVNN--------------PSTPIR--------VIKG----------------   45 (423)
Q Consensus         6 ~~~~~~~~~--~~~~~~~~~~dg~i~~~d~~~--------------~~~~~~--------~~~g----------------   45 (423)
                      ++-..|+.|  |+..|+.+..+|.+-+.+.+-              ..+++.        -|+|                
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            344456666  999999999999998875310              001110        0111                


Q ss_pred             --------ccCceeEEEEeCCCCeEEEecC------CCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecC-
Q psy13076         46 --------HNKPITALALSPDRGTVFTGSH------DGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG-  110 (423)
Q Consensus        46 --------h~~~V~~l~~~~~~~~l~sg~~------D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  110 (423)
                              +++.-..++|-.||+++|..+-      -+.+|||+-+ |.+...-. ...+-.-.++|.|.|+.++.... 
T Consensus       200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~  277 (928)
T PF04762_consen  200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNLIASSQRL  277 (928)
T ss_pred             ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCEEEEEEEc
Confidence                    2223457889999999887653      2689999987 44333222 33344446789999988777542 


Q ss_pred             ---CeEEEEecCCC----cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC-CCCCeeEEE
Q psy13076        111 ---NSVIIRNIENP----AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP-IGGPIKDIA  182 (423)
Q Consensus       111 ---~~~~i~~~~~~----~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~v~~v~  182 (423)
                         ..+..+. ++|    +..-.+......|..+.|++|+..||..-.|. |++|-..+-..-++.++.. ....+..+.
T Consensus       278 ~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~  355 (928)
T PF04762_consen  278 PDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK  355 (928)
T ss_pred             CCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE
Confidence               2333332 122    11111223456789999999999999977555 9999987655444443332 223445599


Q ss_pred             ECCCCCe-EEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc-----CCCceeee
Q psy13076        183 WSPDNQR-MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE-----GPPFKFKM  256 (423)
Q Consensus       183 ~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~-----~~~~~~~~  256 (423)
                      |+|.... +.+...+......-|.+.......             ..|.+.-.+++- +...+.+-.     .|+.-...
T Consensus       356 Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~-------------~~~~D~g~vaVI-DG~~lllTpf~~a~VPPPMs~~  421 (928)
T PF04762_consen  356 WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPG-------------SSPNDNGTVAVI-DGNKLLLTPFRRAVVPPPMSSY  421 (928)
T ss_pred             ECCCCCCEEEEEecCCcEEEEEEEEEEEecCC-------------CCccCceEEEEE-eCCeEEEecccccCCCchHhce
Confidence            9997654 333333232222222221100000             001111111111 111222222     12211111


Q ss_pred             eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc--------eecccc--------cccCCCeEEEEECCCCCe
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL--------VSELGN--------PAHKGGVYAVAWKPDGTQ  320 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~--------~~~~~~--------~~~~~~i~~l~~~~~~~~  320 (423)
                      .+ ..+..|..++|++++..+++-..||.|.+|.......        ...+..        ..-...+..++|..+...
T Consensus       422 ~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (928)
T PF04762_consen  422 EL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTL  500 (928)
T ss_pred             EE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEE
Confidence            22 2346799999999998899999999999888433211        111110        011334678888877776


Q ss_pred             EEEEeCC---CcEEEEecCC
Q psy13076        321 LLTASGD---KTCKLWDIET  337 (423)
Q Consensus       321 l~s~s~d---~~i~iwd~~~  337 (423)
                      ++....+   ..+.++++..
T Consensus       501 ~~~~~~~~~~~~i~~~~~~~  520 (928)
T PF04762_consen  501 LVLSDSDSNQSKIVLVDIDD  520 (928)
T ss_pred             EEEEecCcccceEEEEEecc
Confidence            6665554   5788888743

>KOG1064|consensus

Probab=99.05  E-value=1.9e-09  Score=110.24  Aligned_cols=192  Identities=19%  Similarity=0.269  Sum_probs=132.2

Q ss_pred             CcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC
Q psy13076        130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG  209 (423)
Q Consensus       130 h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~  209 (423)
                      |-..|..+.-+|...+-+||+.||.+++|....+..+......+. ..|+.+.|+.+|..                    
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk-------------------- 2265 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNK-------------------- 2265 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCc--------------------
Confidence            345666777788888999999999999999876665543332222 44555555554433                    


Q ss_pred             cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE---ecCeE
Q psy13076        210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG---FDGKV  286 (423)
Q Consensus       210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s---~dg~i  286 (423)
                                               +..+..||.+.+|...+ +.-...+.|+......+|-.  ..+++++   .++.+
T Consensus      2266 -------------------------~~i~d~dg~l~l~q~~p-k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~ 2317 (2439)
T KOG1064|consen 2266 -------------------------FGIVDGDGDLSLWQASP-KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNV 2317 (2439)
T ss_pred             -------------------------eeeeccCCceeecccCC-cceeccccCCccccceeeee--hhhhccccCCCCCcc
Confidence                                     33344466666665542 22234456666555555543  4455544   46789


Q ss_pred             EEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEE
Q psy13076        287 FLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLT  366 (423)
Q Consensus       287 ~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~  366 (423)
                      .+||..-.....-+. ..|.++.+++++-|..+.|++||.+|.|++||++..+++..+..          .. ..+++++
T Consensus      2318 ~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~ 2385 (2439)
T KOG1064|consen 2318 CLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVT 2385 (2439)
T ss_pred             cchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeec
Confidence            999965433222222 57999999999999999999999999999999999887776642          11 5678899


Q ss_pred             EeCCCcEEEEecCCCC
Q psy13076        367 VSLSGFISYLDVNNPS  382 (423)
Q Consensus       367 ~~~~~~i~~~~~~~~~  382 (423)
                      ++..|.+++|++....
T Consensus      2386 ~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2386 GSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             cCcccceEEEEccccc
Confidence            9999999999998753

>KOG0882|consensus

Probab=99.05  E-value=9e-09  Score=91.48  Aligned_cols=257  Identities=15%  Similarity=0.134  Sum_probs=172.6

Q ss_pred             ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccc
Q psy13076         46 HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD  125 (423)
Q Consensus        46 h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  125 (423)
                      |++.|+.+.-.. .+++++++.||.+|.|--..-.                                       .-+...
T Consensus         8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~is---------------------------------------GvEfVK   47 (558)
T KOG0882|consen    8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRIS---------------------------------------GVEFVK   47 (558)
T ss_pred             ccceeeeEeeeh-hheEEeeecchhhhhcCCCCcc---------------------------------------ceeehh
Confidence            888888776544 5789999999999999532100                                       011233


Q ss_pred             cccCCcceEEEEEECCCCCEEEEEcc-CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        126 IYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       126 ~~~~h~~~i~~~~~sp~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      .+..|...|.+++.+-++..+.|.+. |..+|++|+++-...........++.+..+.-..+-..+++++.......+++
T Consensus        48 hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~Vv  127 (558)
T KOG0882|consen   48 HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVV  127 (558)
T ss_pred             hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEE
Confidence            45668888889999999999999776 99999999987655433333333343333222223333444544444434444


Q ss_pred             eecCCc--ceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-cee-----ee---------eccccccCeEE
Q psy13076        205 MSETGT--SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKF-----KM---------TKQEHSRFVQA  267 (423)
Q Consensus       205 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-~~~-----~~---------~~~~~~~~i~~  267 (423)
                      +.-...  ....-..|..+|..+.++|.+.. +++....|.|.-|..++ ++.     ..         .....+...++
T Consensus       128 D~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts  206 (558)
T KOG0882|consen  128 DGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS  206 (558)
T ss_pred             CCcCCcCccceecccccCceEEEEeeccccc-eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence            433222  22334568889999999998875 66777789999998652 211     11         11223456789


Q ss_pred             EEECCCCCEEEEEEecCeEEEEECCCccceeccccc------------------------------ccC-CCeEEEEECC
Q psy13076        268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP------------------------------AHK-GGVYAVAWKP  316 (423)
Q Consensus       268 l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------------------------~~~-~~i~~l~~~~  316 (423)
                      +.|+|+|..+.+-+.|..|++++.++++++..+...                              .|. ..-+.+.|+.
T Consensus       207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde  286 (558)
T KOG0882|consen  207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE  286 (558)
T ss_pred             eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence            999999999999999999999999988876554221                              011 1235677888


Q ss_pred             CCCeEEEEeCCCcEEEEecCCcceeeee
Q psy13076        317 DGTQLLTASGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       317 ~~~~l~s~s~d~~i~iwd~~~~~~i~~~  344 (423)
                      .|++|+=++.=| |++.++.++.+++.+
T Consensus       287 s~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  287 SGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             CCCEEEeeccee-EEEEEeecCeEEEEe
Confidence            999999887766 899999998877654

>KOG4532|consensus

Probab=99.05  E-value=8.5e-08  Score=79.87  Aligned_cols=255  Identities=13%  Similarity=0.083  Sum_probs=150.1

Q ss_pred             EeccceEEEEeccCCCC-ceeecccccCceeEEEEeC-----CCCeEEEecCCCceEEeecCCcceeecccCCCCCCceE
Q psy13076         22 VSLSGFISYLDVNNPST-PIRVIKGHNKPITALALSP-----DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIV   95 (423)
Q Consensus        22 ~~~dg~i~~~d~~~~~~-~~~~~~gh~~~V~~l~~~~-----~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~   95 (423)
                      .++.-++.+|++..+.+ .+..++|       +.|-|     ...+|+.||.-|...+|...+.+....+          
T Consensus        48 i~~t~sv~i~~~y~N~~~iv~~y~g-------~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~----------  110 (344)
T KOG4532|consen   48 ISKTISVPINSHYSNPKGIVEFYTG-------MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQ----------  110 (344)
T ss_pred             ccceeeeEeccccCCchhhEEeeec-------ccccchHhhccccEEEeccccceeeeecccCcccceee----------
Confidence            45667788888875443 3333332       44444     5678999999999999998764321110          


Q ss_pred             EeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCC
Q psy13076         96 LGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPI  174 (423)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  174 (423)
                                 +.                    .|...|.-+.=.. ...-+.-++.|.++++.+++-.....  ..+-.
T Consensus       111 -----------cd--------------------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~--~~h~~  157 (344)
T KOG4532|consen  111 -----------CD--------------------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF--AVHNQ  157 (344)
T ss_pred             -----------ec--------------------ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc--eeecc
Confidence                       10                    0111111111001 11234446678888888775432211  11111


Q ss_pred             CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee-cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce
Q psy13076        175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG-EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK  253 (423)
Q Consensus       175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~  253 (423)
                      .-...+++.++|+++++++++.+..+..-.+.+....+. .+......-.+..|+.... .+|++++||++.+||.+...
T Consensus       158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccc
Confidence            122678999999999999998877654444443333333 2333344455666776554 59999999999999976432


Q ss_pred             -----eeeeccccccCeEEEEECCCCC--EEEEEEecCeEEEEECCCccceeccccc-----ccC-CCeEEEEECCCCCe
Q psy13076        254 -----FKMTKQEHSRFVQAVRYSPSGS--HFASAGFDGKVFLYDGASADLVSELGNP-----AHK-GGVYAVAWKPDGTQ  320 (423)
Q Consensus       254 -----~~~~~~~~~~~i~~l~~s~~g~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~-~~i~~l~~~~~~~~  320 (423)
                           ...+...|++.++.+.|+|-|.  +|...-.-+.+.+-|+++++..+.+...     .|. ..|.+-.|+.++..
T Consensus       237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s  316 (344)
T KOG4532|consen  237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES  316 (344)
T ss_pred             cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence                 2234456889999999999775  3444445678899999887644332111     122 23667777776665


Q ss_pred             EEEEeCC
Q psy13076        321 LLTASGD  327 (423)
Q Consensus       321 l~s~s~d  327 (423)
                      ..+...+
T Consensus       317 ~~v~~e~  323 (344)
T KOG4532|consen  317 NDVKNEL  323 (344)
T ss_pred             cccccch
Confidence            5554443

>KOG0280|consensus

Probab=99.05  E-value=5.5e-08  Score=82.01  Aligned_cols=188  Identities=15%  Similarity=0.239  Sum_probs=122.5

Q ss_pred             EEEEEccCCcEEEEEcCCCceeEEe-eecC--CC-CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC--cceecccCC
Q psy13076        145 YIASGDISGKVRIWDTVNKEHILKN-EFHP--IG-GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG--TSVGEISGQ  218 (423)
Q Consensus       145 ~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~--~~-~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  218 (423)
                      .++-+..+|.|.++.....+...-. .+..  .. ....++.|++.+..+++ +..+.... .......  +..++.+.|
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~v-s~s~G~~~-~v~~t~~~le~vq~wk~H  164 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFV-SDSRGSIS-GVYETEMVLEKVQTWKVH  164 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEE-EcCCCcEE-EEecceeeeeeccccccc
Confidence            5566778899999976433221100 0000  01 12457889988877554 33333322 1111111  233467788


Q ss_pred             CcceeEEEEecCCCeeEEEEeCCCeEEEEcCC-Cceeeee-ccccccCeEEEEECC-CCCEEEEEEecCeEEEEECCC-c
Q psy13076        219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-PFKFKMT-KQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGAS-A  294 (423)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~-~~~~~~~-~~~~~~~i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~-~  294 (423)
                      .-+...+.|+...+.++.+|+.|+.+..||.+ +.++..+ ...|...|.++.-+| ++.++++|++|-.|++||.+. +
T Consensus       165 e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~  244 (339)
T KOG0280|consen  165 EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG  244 (339)
T ss_pred             ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence            88999999999888889999999999999987 4344444 456777788887776 467999999999999999884 4


Q ss_pred             cceecccccccCCCeEEEEECCCC--CeEEEEeCCCcEEEEecCCc
Q psy13076        295 DLVSELGNPAHKGGVYAVAWKPDG--TQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       295 ~~~~~~~~~~~~~~i~~l~~~~~~--~~l~s~s~d~~i~iwd~~~~  338 (423)
                      +.+..   ..-.++|+.+.++|.-  ..|++ +...-.+|-+.+.+
T Consensus       245 kPl~~---~~v~GGVWRi~~~p~~~~~lL~~-CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  245 KPLFK---AKVGGGVWRIKHHPEIFHRLLAA-CMHNGAKILDSSDK  286 (339)
T ss_pred             Ccccc---CccccceEEEEecchhhhHHHHH-HHhcCceEEEeccc
Confidence            44333   2345889999999953  33444 44444666665543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.03  E-value=5.7e-07  Score=93.85  Aligned_cols=255  Identities=12%  Similarity=0.048  Sum_probs=151.6

Q ss_pred             EEEEECCC-CCEEEEEccCCcEEEEEcCCCceeEEeeecCC------------CCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        135 NVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPI------------GGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       135 ~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~------------~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                      ..++++++ +.++++-...+.|+++|..... .........            -.....+++.+++..+.++...+.. .
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~-I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA-L  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce-E
Confidence            45778874 5666666677899999975432 211111000            0124678999988876665544332 2


Q ss_pred             EEEeecCCcceecccC-----------------CCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee-------
Q psy13076        202 HVFMSETGTSVGEISG-----------------QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT-------  257 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~-------  257 (423)
                      +.++...+. +..+.+                 .......++++|.+..+.++.+.++.|++|+.........       
T Consensus       649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            333332221 111110                 0123457899996666677778889999998654332110       


Q ss_pred             -cc------ccccCeEEEEECCCCCE-EEEEEecCeEEEEECCCccceec-------------ccc------cccCCCeE
Q psy13076        258 -KQ------EHSRFVQAVRYSPSGSH-FASAGFDGKVFLYDGASADLVSE-------------LGN------PAHKGGVY  310 (423)
Q Consensus       258 -~~------~~~~~i~~l~~s~~g~~-l~s~s~dg~i~vwd~~~~~~~~~-------------~~~------~~~~~~i~  310 (423)
                       ..      ........++++|+|++ +++-+.++.|++||..++.....             +..      ...-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence             00      01123567999999984 45555678999999876542110             000      00112346


Q ss_pred             EEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc
Q psy13076        311 AVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG  390 (423)
Q Consensus       311 ~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  390 (423)
                      +++++++|+.+++-+.+++|++||..++.... +..             .|.   .+..+|.              ...+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG-------------~G~---~G~~dG~--------------~~~a  856 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAG-------------TGK---AGFKDGK--------------ALKA  856 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-Eec-------------cCC---cCCCCCc--------------cccc
Confidence            89999999999999999999999988765322 110             000   0000110              0122


Q ss_pred             CCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        391 HNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       391 h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      +-.....++++|+++++++-+.+..|++||+++
T Consensus       857 ~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        857 QLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             ccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            234567899999999999999999999999864

>KOG0309|consensus

Probab=99.03  E-value=2.5e-09  Score=100.37  Aligned_cols=281  Identities=21%  Similarity=0.293  Sum_probs=179.8

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCc--eeEEEEeCCC---CeEEEecCCCceEEeecCCcceeec
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP--ITALALSPDR---GTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~--V~~l~~~~~~---~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      +.+++-|+=+|.|++-|.. +.|+++|..|...+. |-.|  |..++|+|..   .++++.+. ..-.+|++...     
T Consensus        30 ~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~s-----  101 (1081)
T KOG0309|consen   30 VSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKS-----  101 (1081)
T ss_pred             eeeccccchhhhhhhcCeE-EEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCc-chhhhhhhhcC-----
Confidence            4556778889998888765 889999998886665 4433  7778898853   34666655 44558887531     


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC-CCEEEEEccCCcEEEEEcCCC
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~  163 (423)
                                              +          +..+.-++-||...|+.+.|+|. ...+|+++.|..+..||+.+.
T Consensus       102 ------------------------s----------~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen  102 ------------------------S----------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             ------------------------C----------ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence                                    0          11112245589999999999984 568899999999999999876


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC-CcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                      ..-... +..-......|+|+-....+++...++.  ..+|+... +..+..++++...++.++|+.-....+.+++.|+
T Consensus       148 ~~p~ys-~~~w~s~asqVkwnyk~p~vlasshg~~--i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~  224 (1081)
T KOG0309|consen  148 HRPFYS-TSSWRSAASQVKWNYKDPNVLASSHGND--IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDG  224 (1081)
T ss_pred             Ccceee-eecccccCceeeecccCcchhhhccCCc--eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCC
Confidence            432111 1111234567899987666666555443  45666554 4677888999999999999887766789999999


Q ss_pred             eEEEEcCCCce-eeeeccccccCeEEEEECCCCC--EEEEEEecCeEEEE---------ECCCc-cceecccccccCCCe
Q psy13076        243 TIAVFEGPPFK-FKMTKQEHSRFVQAVRYSPSGS--HFASAGFDGKVFLY---------DGASA-DLVSELGNPAHKGGV  309 (423)
Q Consensus       243 ~i~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~g~--~l~s~s~dg~i~vw---------d~~~~-~~~~~~~~~~~~~~i  309 (423)
                      +++.|+-.... ........+.+|..-++-|-|.  ++.---.+..+.+.         +..++ +.+.++  .+|...|
T Consensus       225 tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F--~GH~D~V  302 (1081)
T KOG0309|consen  225 TVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF--VGHDDVV  302 (1081)
T ss_pred             ceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee--cCcchHH
Confidence            99999853221 1111111223344445555443  22111112233333         32222 223333  4687777


Q ss_pred             EEEEECCCC----------CeEEEEeCCCcEEEEecCC
Q psy13076        310 YAVAWKPDG----------TQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       310 ~~l~~~~~~----------~~l~s~s~d~~i~iwd~~~  337 (423)
                      ..+-|...+          -.|+|-|.|.++|+|-+.+
T Consensus       303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            666664422          3799999999999997764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.99  E-value=8.8e-10  Score=66.01  Aligned_cols=38  Identities=37%  Similarity=0.712  Sum_probs=35.9

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEee
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN   75 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~   75 (423)
                      +++.++++|.++|++|+|+|++.+|+||+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45779999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.95  E-value=2.6e-06  Score=72.18  Aligned_cols=243  Identities=19%  Similarity=0.211  Sum_probs=132.5

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCce-ee---cccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI-RV---IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~-~~---~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      |++..+||+.||. -.|-.|.+-..+.....+ ..   -+.-+-.=.-++||||+.+||-+.+-|+|+++|+....++ .
T Consensus         2 ~~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~   79 (282)
T PF15492_consen    2 HLALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-V   79 (282)
T ss_pred             ceeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-E
Confidence            5677788888885 678788887665443322 22   2222333568999999999999999999999999864443 3


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC------CCEEEEEccCCcEEEE
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS------GFYIASGDISGKVRIW  158 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~------~~~l~s~~~d~~i~vw  158 (423)
                      +++....       ..+                            -...|-.+.|-+.      ...|+.-..+|.++=|
T Consensus        80 I~p~~~~-------~~d----------------------------~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   80 IPPAMSF-------PGD----------------------------LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             cCccccc-------CCc----------------------------cccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            3221100       000                            0111222222110      1234445566666666


Q ss_pred             EcCC---Cce--eEEeeecC-CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCC
Q psy13076        159 DTVN---KEH--ILKNEFHP-IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP  232 (423)
Q Consensus       159 d~~~---~~~--~~~~~~~~-~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  232 (423)
                      -+..   ...  .....+.. .+..|.++.++|..+.|+++|.....-+..            +....-+++...-.+.+
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s------------~a~~~GLtaWRiL~~~P  192 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS------------KASSCGLTAWRILSDSP  192 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc------------cccccCceEEEEcCCCC
Confidence            5421   111  11222221 245799999999998888776543311000            00111122222222222


Q ss_pred             eeE-EEEeCCCe------EEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecc
Q psy13076        233 FRI-ITGSEDNT------IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL  300 (423)
Q Consensus       233 ~~~-~s~s~d~~------i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~  300 (423)
                      +.. ++...|+.      ..++.....++-.......+.|..+..||||++||+.+.+|.|.+|++.+-+.....
T Consensus       193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  193 YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            222 22222222      122322222222122234567889999999999999999999999998876655443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.91  E-value=3e-09  Score=63.64  Aligned_cols=37  Identities=38%  Similarity=0.731  Sum_probs=35.0

Q ss_pred             ceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        384 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       384 ~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      +++.+.+|+.+|++|+|+|++++|+|++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4578899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.90  E-value=2.2e-06  Score=72.63  Aligned_cols=236  Identities=16%  Similarity=0.215  Sum_probs=119.6

Q ss_pred             CCCCCeEEEecCCeEEEEecCCCcc--c---ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEee---
Q psy13076         99 DPKGKNFLYTNGNSVIIRNIENPAI--S---DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE---  170 (423)
Q Consensus        99 ~~~~~~~~~~~~~~~~i~~~~~~~~--~---~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---  170 (423)
                      .++|+.++...++.+.++..++...  +   .+.....-.=..++||||+..||.+...|+|+++|+...+......   
T Consensus         6 ~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~   85 (282)
T PF15492_consen    6 SSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMS   85 (282)
T ss_pred             cCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccc
Confidence            3455555555555555554432110  0   0111112234568999999999999999999999986533221110   


Q ss_pred             ec-CCCCCeeEEEECCCC------CeEEEEEcCCceeeEEEeec--CC-cceecc---cCCCcceeEEEEecCCCeeEEE
Q psy13076        171 FH-PIGGPIKDIAWSPDN------QRMVVVGEGRERFGHVFMSE--TG-TSVGEI---SGQSKPINSCDFKPSRPFRIIT  237 (423)
Q Consensus       171 ~~-~~~~~v~~v~~s~~~------~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~---~~~~~~i~~~~~~~~~~~~~~s  237 (423)
                      +. .....|..+.|.+-.      ..|++...............  .+ .....+   .....-|.++.|+|....++++
T Consensus        86 ~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVg  165 (282)
T PF15492_consen   86 FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVG  165 (282)
T ss_pred             cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEe
Confidence            00 112345555565421      23444433222111111111  11 111111   2235678999999988876666


Q ss_pred             EeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCE--EEEEEecCe------EEEEECCCccceecccccccCCCe
Q psy13076        238 GSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH--FASAGFDGK------VFLYDGASADLVSELGNPAHKGGV  309 (423)
Q Consensus       238 ~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~--l~s~s~dg~------i~vwd~~~~~~~~~~~~~~~~~~i  309 (423)
                      |.....-....           +....+++-+.-.+..+  .++...|+.      -.+|.+-+.+.....  ......|
T Consensus       166 G~~~~~~~~s~-----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~--~~~~d~i  232 (282)
T PF15492_consen  166 GCEQNQDGMSK-----------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ--GQEQDGI  232 (282)
T ss_pred             ccCCCCCcccc-----------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc--ccCCCce
Confidence            65433211110           11111222222111111  111111211      122332222222211  1235679


Q ss_pred             EEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC
Q psy13076        310 YAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG  347 (423)
Q Consensus       310 ~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~  347 (423)
                      ..|..||||+.|++...+|.|.+|++.+-++..++...
T Consensus       233 ~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  233 FKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             EEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            99999999999999999999999999998877766543

>KOG0882|consensus

Probab=98.87  E-value=1.6e-07  Score=83.76  Aligned_cols=277  Identities=16%  Similarity=0.182  Sum_probs=162.4

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccC--CCCceeecccccCceeEEEEeCCCCeEEEecC-CCceEEeecCCcceeecc
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNN--PSTPIRVIKGHNKPITALALSPDRGTVFTGSH-DGFITRWNAKTEYIFATL   85 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~--~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~-D~~i~vW~~~~~~~~~~~   85 (423)
                      ++.|.- -+++++||.||.+..|-..-  +.+-+..++.|-+.|.+++.+-++.++.|.+. |..+|++|+++.....++
T Consensus        14 hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi   92 (558)
T KOG0882|consen   14 HVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI   92 (558)
T ss_pred             eEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc
Confidence            344444 88999999999999997532  23345567899999999999999999999888 999999999876544332


Q ss_pred             cCC-CCCCceEEeeCCCCC-eEEEe--cCCeEEEEecCCCc--ccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEE
Q psy13076         86 PRT-QRGQPIVLGGDPKGK-NFLYT--NGNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD  159 (423)
Q Consensus        86 ~~~-~~~~~~~~~~~~~~~-~~~~~--~~~~~~i~~~~~~~--~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd  159 (423)
                      ... ..+...+.....+-. .++.+  ....+.+.|-....  ....-.-|.++|..+.+.|.+..+.|.+..|-|..|.
T Consensus        93 KL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs  172 (558)
T KOG0882|consen   93 KLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWS  172 (558)
T ss_pred             ccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeec
Confidence            211 111111111111111 11111  12233343332222  1122235999999999999999999999999999999


Q ss_pred             cCCC----ce--eEE-------eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEE
Q psy13076        160 TVNK----EH--ILK-------NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD  226 (423)
Q Consensus       160 ~~~~----~~--~~~-------~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  226 (423)
                      .+..    +.  ...       ..+........++.|+|++..+...+.  +...++++..+++.++.+......-.+  
T Consensus       173 ~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~--DrkVR~F~~KtGklvqeiDE~~t~~~~--  248 (558)
T KOG0882|consen  173 AEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP--DRKVRGFVFKTGKLVQEIDEVLTDAQY--  248 (558)
T ss_pred             CCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc--ccEEEEEEeccchhhhhhhccchhhhh--
Confidence            7631    11  000       112223455678999999999888774  344566666666665554322211111  


Q ss_pred             EecCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc-CeEEEEECCCCCEEEEEEecCeEEEEECCCccceecc
Q psy13076        227 FKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR-FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL  300 (423)
Q Consensus       227 ~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~  300 (423)
                       -|..++.+-.-       .| .+.......++.|.. .-+.+.|...|++|+-|+.=| |++.++.++.+...+
T Consensus       249 -q~ks~y~l~~V-------el-gRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  249 -QPKSPYGLMHV-------EL-GRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             -cccccccccee-------eh-hhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence             11111111000       00 001111112222332 235678999999999887655 778887776655443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=2.8e-06  Score=79.98  Aligned_cols=201  Identities=7%  Similarity=0.021  Sum_probs=116.8

Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCE-EEEEcc---CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCC
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFY-IASGDI---SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN  187 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  187 (423)
                      .+.+-|.+.........+ . .+..-.|+|||+. ++..+.   +..|.++|+.+++......   ..+......|+|||
T Consensus       170 ~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG  244 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDG  244 (419)
T ss_pred             eEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCC
Confidence            444444443332223333 3 6778899999984 554333   3568888887765433222   23445667899999


Q ss_pred             CeEEEEEcCCceeeEEEeec-CCcceecccCCCcceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCceee-eecccccc
Q psy13076        188 QRMVVVGEGRERFGHVFMSE-TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFK-MTKQEHSR  263 (423)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~~~~-~~~~~~~~  263 (423)
                      +.++........ ..+|..+ .+.....+...........|+|++..+..+....+  .|++.+....... .+....  
T Consensus       245 ~~la~~~~~~g~-~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--  321 (419)
T PRK04043        245 SKLLLTMAPKGQ-PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--  321 (419)
T ss_pred             CEEEEEEccCCC-cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--
Confidence            988876543322 2344333 22223444433322345679999987666665555  4555565444332 222211  


Q ss_pred             CeEEEEECCCCCEEEEEEec---------CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC
Q psy13076        264 FVQAVRYSPSGSHFASAGFD---------GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG  326 (423)
Q Consensus       264 ~i~~l~~s~~g~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~  326 (423)
                      .  ...|+|||++++..+..         ..|.+.|..+++. ..+...   +......|+|||+.++-.+.
T Consensus       322 ~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~---~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        322 N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN---GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC---CCcCCeEECCCCCEEEEEEc
Confidence            1  24899999988777654         2688888877653 344322   22335889999998776654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.85  E-value=1.4e-05  Score=72.25  Aligned_cols=171  Identities=15%  Similarity=0.164  Sum_probs=122.1

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCC-ceEEeecCCcceeecccCCCCCCc
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG-FITRWNAKTEYIFATLPRTQRGQP   93 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~-~i~vW~~~~~~~~~~~~~~~~~~~   93 (423)
                      +|++++..|+-. ..+.+... +..  .--+|.+.|.-..+..+..-++.|..|| .+-|+|..++++.....  .-+..
T Consensus       331 ~Gd~ia~VSRGk-aFi~~~~~-~~~--iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I  404 (668)
T COG4946         331 NGDYIALVSRGK-AFIMRPWD-GYS--IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNI  404 (668)
T ss_pred             CCcEEEEEecCc-EEEECCCC-Cee--EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--Cccce
Confidence            599999988754 44554432 111  2357888899999988888899999999 89999999987654332  23556


Q ss_pred             eEEeeCCCCCeEEEecC-CeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC----CcEEEEEcCCCceeEE
Q psy13076         94 IVLGGDPKGKNFLYTNG-NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNKEHILK  168 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d----~~i~vwd~~~~~~~~~  168 (423)
                      -++..+++|+.++.++. ..+.+.+++++....+-+...+-|+...|||+++++|-+=-+    ..|+++|+...+..-.
T Consensus       405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            67888999997777664 467778888888776666666789999999999999976544    5799999987664321


Q ss_pred             eeecCCCCCeeEEEECCCCCeEEEEE
Q psy13076        169 NEFHPIGGPIKDIAWSPDNQRMVVVG  194 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~~~~~~~~~~  194 (423)
                      ..   ..+-=-+=+|.||+++|...+
T Consensus       485 TT---~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         485 TT---PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cC---CcccccCcccCCCCcEEEEEe
Confidence            11   111112346888999887654

>KOG0280|consensus

Probab=98.85  E-value=2.8e-07  Score=77.88  Aligned_cols=139  Identities=15%  Similarity=0.115  Sum_probs=99.5

Q ss_pred             eEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCC-CCeEEEEeCCCcEEEEecCC-cceee
Q psy13076        265 VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD-GTQLLTASGDKTCKLWDIET-KSAVS  342 (423)
Q Consensus       265 i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~s~s~d~~i~iwd~~~-~~~i~  342 (423)
                      -.++.|++.|..++++-.+|.+.+-+.....+.+...-+.|.-+++...|+.. .+.+.+||+|+.+..||++. ++.+-
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            35788999999999999999998655444444332223568889999999864 46889999999999999983 33332


Q ss_pred             eeeeCceeEeeEEEEE-ecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC
Q psy13076        343 EFLMGNQVEDQQVSCL-WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR  404 (423)
Q Consensus       343 ~~~~~~~~~~~~~~~~-~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~  404 (423)
                      .-...+.....++..+ +.+.++++|+.|..|+.||.++..+|+.. ..-.+.||.+.++|.-
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-AKVGGGVWRIKHHPEI  265 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-CccccceEEEEecchh
Confidence            2111222333334333 46789999999999999999988887654 2334789999999953

>KOG4714|consensus

Probab=98.82  E-value=1.7e-07  Score=77.84  Aligned_cols=94  Identities=24%  Similarity=0.311  Sum_probs=69.2

Q ss_pred             eEEEEcCCCceeeeeccccccCeEEEEECCCCC-EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECC-CCCe
Q psy13076        243 TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-DGTQ  320 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~  320 (423)
                      ..+.|+..+.+...........+++++-+|.-+ .+++|+.||.+-+||.+.......+- .+|+..|+.+-|+| ++..
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-~ahk~~i~eV~FHpk~p~~  238 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL-KAHKAEIWEVHFHPKNPEH  238 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH-HHhhhhhhheeccCCCchh
Confidence            345566554443332223334488999998654 67889999999999998875443332 47999999999999 5679


Q ss_pred             EEEEeCCCcEEEEecCC
Q psy13076        321 LLTASGDKTCKLWDIET  337 (423)
Q Consensus       321 l~s~s~d~~i~iwd~~~  337 (423)
                      |++++.||.+--||..+
T Consensus       239 Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  239 LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeEecCCCcEEEEcCCC
Confidence            99999999999999765

>KOG1912|consensus

Probab=98.78  E-value=3.2e-06  Score=80.62  Aligned_cols=237  Identities=17%  Similarity=0.260  Sum_probs=158.3

Q ss_pred             EEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC------------CCEEEEEccCCcEEEEEcCC
Q psy13076         95 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS------------GFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~------------~~~l~s~~~d~~i~vwd~~~  162 (423)
                      ++.++|.| ++++.+++.+.+-|..+-+.+..+.-|+..|+.++|.|-            .-.+|+++..|.|.+||...
T Consensus        20 A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~   98 (1062)
T KOG1912|consen   20 AADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL   98 (1062)
T ss_pred             ccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence            44455544 677888888888888888888899999999999999874            13678888899999999876


Q ss_pred             CceeEEeeecCCCCCeeEEEECC---CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe
Q psy13076        163 KEHILKNEFHPIGGPIKDIAWSP---DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS  239 (423)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~s~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s  239 (423)
                      .....  .+..+..++.++.|-+   +.+.++.+-.+ ..+.-+|..++|.......-......++.+.|-+...+..-+
T Consensus        99 ~s~~~--~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~-ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~  175 (1062)
T KOG1912|consen   99 ASVIN--WLSHSNDSVQDLCWVPARDDSRDVLLAIHG-SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG  175 (1062)
T ss_pred             hhhhh--hhcCCCcchhheeeeeccCcchheeEEecC-CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence            55443  3344567888888876   34344444332 334567778888887776655566677888887655454445


Q ss_pred             CCCeEEEEcC--------CCceeeeecc--c-------------c------ccCe---EEEEECCCCCEEEEEEecCeEE
Q psy13076        240 EDNTIAVFEG--------PPFKFKMTKQ--E-------------H------SRFV---QAVRYSPSGSHFASAGFDGKVF  287 (423)
Q Consensus       240 ~d~~i~~~~~--------~~~~~~~~~~--~-------------~------~~~i---~~l~~s~~g~~l~s~s~dg~i~  287 (423)
                      ..|.+.+-+.        +..++..+..  .             +      ...|   ..++|+|.-+.++.......+.
T Consensus       176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell  255 (1062)
T KOG1912|consen  176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL  255 (1062)
T ss_pred             cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence            5555555432        1111111111  0             0      0111   2467899888777788899999


Q ss_pred             EEECCCccceecccccccCCCeEEEEECCCC--CeEEEEeCCCcEEEEecCC
Q psy13076        288 LYDGASADLVSELGNPAHKGGVYAVAWKPDG--TQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       288 vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~s~s~d~~i~iwd~~~  337 (423)
                      ++|++-...+.....  ..+++.=+.+-|++  ..|++.-.||.+.+|-.+.
T Consensus       256 v~dle~~~~l~vvpi--er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  256 VFDLEYECCLAVVPI--ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEcchhhceeEEEEe--ccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            999876555555432  23445556676655  5789999999999997654

>KOG4532|consensus

Probab=98.77  E-value=1.2e-06  Score=73.16  Aligned_cols=105  Identities=16%  Similarity=0.210  Sum_probs=73.1

Q ss_pred             EEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCC-ccceecccccccCCCeEEEE
Q psy13076        235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS-ADLVSELGNPAHKGGVYAVA  313 (423)
Q Consensus       235 ~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~  313 (423)
                      +..++.|.++++++..............-...++++++|++++++.+....|..|.+.. ++.+.....+.-+..-.+.+
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence            55678888888887544332222222212367899999999999999999999887653 33332222122233446889


Q ss_pred             ECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076        314 WKPDGTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       314 ~~~~~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      |+.+...+|+++.||++.|||++...
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEecccc
Confidence            99999999999999999999998653

>KOG4714|consensus

Probab=98.76  E-value=4.2e-08  Score=81.29  Aligned_cols=125  Identities=21%  Similarity=0.350  Sum_probs=86.2

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP   93 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~   93 (423)
                      +...+++|+.||.+.+||.++...|...|++|++++..+-|+|. ...|+++++||.+..||..+..+-  .........
T Consensus       191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~--i~~~~s~~s  268 (319)
T KOG4714|consen  191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS--ISNQASVIS  268 (319)
T ss_pred             cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE--ecCcccccc
Confidence            78999999999999999999988899999999999999999995 568999999999999998763322  222222233


Q ss_pred             eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEE
Q psy13076         94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD  159 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd  159 (423)
                      .++.++|-..        .+.+        ...+..-.-.|++...  -|..+++|+.-+.|.+++
T Consensus       269 ~WLsgD~v~s--------~i~i--------~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  269 SWLSGDPVKS--------RIEI--------TSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ccccCCcccc--------eEee--------eccccccceeeeeeec--cCceEEeccccceEEEec
Confidence            3343333211        1111        1122222334554444  366888888777777764

>KOG1920|consensus

Probab=98.75  E-value=4.3e-06  Score=83.66  Aligned_cols=275  Identities=17%  Similarity=0.213  Sum_probs=146.9

Q ss_pred             ceeeEEEE--eCCEEEEEeccceEEEEeccCCCCceeeccc-ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076          7 DQQVSCLW--QGDYLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus         7 ~~~~~~~~--~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~g-h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      |-.+++.+  |+.-+..+..+|.|.+-|..+.   ...+-| -...|.+++|+||+++++-...++++.+=. .+-..+.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~---~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETL---ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccc---ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchh
Confidence            45667776  7778888899999999987642   223334 467899999999999988888878876532 1111111


Q ss_pred             c--c--cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc----cC-Cc
Q psy13076         84 T--L--PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----IS-GK  154 (423)
Q Consensus        84 ~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~----~d-~~  154 (423)
                      .  +  .....+..+.+++......|-.+.+....-......+.......|. .=+++.|.-||+|+|+..    .+ +.
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEEEeccCCcee
Confidence            1  1  1112234445555444334433322111000000000000001111 123578999999999832    23 79


Q ss_pred             EEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCee
Q psy13076        155 VRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFR  234 (423)
Q Consensus       155 i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  234 (423)
                      |++||.+ +.  +.....+..+.=.+++|-|.|..+++....                                      
T Consensus       224 irV~drE-g~--Lns~se~~~~l~~~LsWkPsgs~iA~iq~~--------------------------------------  262 (1265)
T KOG1920|consen  224 IRVYDRE-GA--LNSTSEPVEGLQHSLSWKPSGSLIAAIQCK--------------------------------------  262 (1265)
T ss_pred             EEEeccc-ch--hhcccCcccccccceeecCCCCeEeeeeec--------------------------------------
Confidence            9999976 21  111111112223578888888766654211                                      


Q ss_pred             EEEEeCCCeEEEEcCCC---ceeeeeccccccCeEEEEECCCCCEEEE---EEecCeEEEEECCCccce--ecccccccC
Q psy13076        235 IITGSEDNTIAVFEGPP---FKFKMTKQEHSRFVQAVRYSPSGSHFAS---AGFDGKVFLYDGASADLV--SELGNPAHK  306 (423)
Q Consensus       235 ~~s~s~d~~i~~~~~~~---~~~~~~~~~~~~~i~~l~~s~~g~~l~s---~s~dg~i~vwd~~~~~~~--~~~~~~~~~  306 (423)
                          ..|+.|..|+-+.   ..+..........+..++|+.++..||.   ......|++|-..+..-.  ..+..+   
T Consensus       263 ----~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~---  335 (1265)
T KOG1920|consen  263 ----TSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS---  335 (1265)
T ss_pred             ----CCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc---
Confidence                1223455554322   1222222333344889999999999887   444445999987654321  112211   


Q ss_pred             CCeEEEEECCCC-CeEEEEeCCCcEEEEec
Q psy13076        307 GGVYAVAWKPDG-TQLLTASGDKTCKLWDI  335 (423)
Q Consensus       307 ~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~  335 (423)
                      . ..-+.|+|-. ..|..-..+|...++|+
T Consensus       336 ~-~~~~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  336 Q-KALLMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             c-cccccccCCCceeEEEEecCCcEEEEEE
Confidence            1 1127788833 23333335666666554

>KOG4190|consensus

Probab=98.75  E-value=2.8e-08  Score=90.59  Aligned_cols=202  Identities=19%  Similarity=0.277  Sum_probs=132.1

Q ss_pred             eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-------ceeeeeccccccCeEEEEECCCCCEEEEEEecC
Q psy13076        212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-------FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG  284 (423)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-------~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg  284 (423)
                      +..+.+|...|..+.--.+.+ -+++++.|+++++|..++       ..+..++..|+.+|..+.|-.+.+++++  .||
T Consensus       728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccC
Confidence            345567777776654443333 388999999999997542       3367889999999999999999888875  589


Q ss_pred             eEEEEECCCccceecccccccCCCeEEEEECCC--CCeEEEE-eCCCcEEEEecCCcceeeeeeeCc----eeEeeEEEE
Q psy13076        285 KVFLYDGASADLVSELGNPAHKGGVYAVAWKPD--GTQLLTA-SGDKTCKLWDIETKSAVSEFLMGN----QVEDQQVSC  357 (423)
Q Consensus       285 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~~----~~~~~~~~~  357 (423)
                      -|.+||.--++.+.++......+.+..+.--|+  ...++.+ +...+|+++|.++++...++...+    +.....+.+
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            999999887776654432222233333333343  3444444 778999999999988877775432    123345666


Q ss_pred             EecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEE
Q psy13076        358 LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR  418 (423)
Q Consensus       358 ~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~  418 (423)
                      .+.|.+++++-.+|.|.+.|.+++.. +..++-.+-....++ .|.++.|+...-|-++.+
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G~v-INswrpmecdllqla-apsdq~L~~saldHslaV  943 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNGKV-INSWRPMECDLLQLA-APSDQALAQSALDHSLAV  943 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCCce-eccCCcccchhhhhc-CchhHHHHhhcccceeEe
Confidence            67899999999999999999988532 222222221222222 344455554444555544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.74  E-value=8.2e-07  Score=75.68  Aligned_cols=278  Identities=15%  Similarity=0.236  Sum_probs=152.9

Q ss_pred             eeEEEEe--CCEEEEEeccceEEEEeccCCCCce----eeccccc------------CceeEEEEeCCCC--eEEEecCC
Q psy13076          9 QVSCLWQ--GDYLLTVSLSGFISYLDVNNPSTPI----RVIKGHN------------KPITALALSPDRG--TVFTGSHD   68 (423)
Q Consensus         9 ~~~~~~~--~~~~~~~~~dg~i~~~d~~~~~~~~----~~~~gh~------------~~V~~l~~~~~~~--~l~sg~~D   68 (423)
                      -.|+-+|  |.||++|-.-|.+-++.-++...+.    ..|++|.            ..|+.+.|..+++  .++-.+.|
T Consensus        29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd  108 (460)
T COG5170          29 ITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND  108 (460)
T ss_pred             eeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence            3456664  8999999888999999765533222    2366665            3678888877543  45555689


Q ss_pred             CceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEE---------ecCCeEEEEecCCCcccccc-cCCcceEEEEE
Q psy13076         69 GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLY---------TNGNSVIIRNIENPAISDIY-TEHSCAVNVAK  138 (423)
Q Consensus        69 ~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~-~~h~~~i~~~~  138 (423)
                      .+|++|.+-..-+...-+.....    -...|-+..+..         +....+..-     ...+++ ..|..-|+++.
T Consensus       109 ktiKlWKiyeknlk~va~nnls~----~~~~~~~g~~~s~~~l~lprls~hd~iiaa-----~p~rvyaNaH~yhiNSiS  179 (460)
T COG5170         109 KTIKLWKIYEKNLKVVAENNLSD----SFHSPMGGPLTSTKELLLPRLSEHDEIIAA-----KPCRVYANAHPYHINSIS  179 (460)
T ss_pred             ceeeeeeeecccchhhhcccccc----ccccccCCCcCCHHHhhcccccccceEEEe-----ccceeccccceeEeeeee
Confidence            99999987543111000000000    000111110000         000000000     011223 46889999999


Q ss_pred             ECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCC
Q psy13076        139 YSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ  218 (423)
Q Consensus       139 ~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (423)
                      |..|.+.+++++ |-.|.+|+++......           +-+..-|..-                           ..-
T Consensus       180 ~NsD~et~lSaD-dLrINLWnl~i~D~sF-----------nIVDiKP~nm---------------------------eeL  220 (460)
T COG5170         180 FNSDKETLLSAD-DLRINLWNLEIIDGSF-----------NIVDIKPHNM---------------------------EEL  220 (460)
T ss_pred             ecCchheeeecc-ceeeeeccccccCCce-----------EEEeccCccH---------------------------HHH
Confidence            999999988875 5679999976433221           1111111100                           000


Q ss_pred             CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee--------eee--------ccccccCeEEEEECCCCCEEEEEEe
Q psy13076        219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF--------KMT--------KQEHSRFVQAVRYSPSGSHFASAGF  282 (423)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~--------~~~--------~~~~~~~i~~l~~s~~g~~l~s~s~  282 (423)
                      ..-|++..|+|.....+.-++..|.|++-|.+...+        ..+        ..+....|..+.|+|+|+|+++-+.
T Consensus       221 teVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy  300 (460)
T COG5170         221 TEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY  300 (460)
T ss_pred             HHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence            012444455555444455555667777766542111        000        1122345778999999999997654


Q ss_pred             cCeEEEEECCCcc-ceeccccc----------ccCCCe---EEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076        283 DGKVFLYDGASAD-LVSELGNP----------AHKGGV---YAVAWKPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       283 dg~i~vwd~~~~~-~~~~~~~~----------~~~~~i---~~l~~~~~~~~l~s~s~d~~i~iwd~  335 (423)
                       -++++||.+..+ +++++...          -.+..|   ..+.|+.|.+.+++|+-....-++-.
T Consensus       301 -ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         301 -LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             -ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence             479999986543 34443210          012233   35788988888889888777666653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.71  E-value=0.00014  Score=63.81  Aligned_cols=217  Identities=15%  Similarity=0.151  Sum_probs=128.1

Q ss_pred             EEEEeC-CCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeC-CCCCeEEEecCCeEEEEecCCCcccccccC
Q psy13076         52 ALALSP-DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGD-PKGKNFLYTNGNSVIIRNIENPAISDIYTE  129 (423)
Q Consensus        52 ~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  129 (423)
                      +..|.+ ++.++++--..+.|..|+..++.......   .. +.-+..+ +++..+++.. ....+.++++++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~---~~-~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL---PG-PNGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES---SS-EEEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec---CC-CceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeec
Confidence            567887 67788888888999999998876532111   11 4444444 5655555544 4455558888766544432


Q ss_pred             -----CcceEEEEEECCCCCEEEEEccC--------CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076        130 -----HSCAVNVAKYSPSGFYIASGDIS--------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       130 -----h~~~i~~~~~sp~~~~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                           .....+.+++.|+|++.++....        +.|..++.. ++......  . -...+.++|+|+++.|+++...
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~-~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--G-LGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--E-ESSEEEEEEETTSSEEEEEETT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--C-cccccceEECCcchheeecccc
Confidence                 45678999999999977775543        345556655 23221111  1 1335789999999988877665


Q ss_pred             CceeeEEEeecCCcce------ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEE
Q psy13076        197 RERFGHVFMSETGTSV------GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRY  270 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~  270 (423)
                      ......+-....+..+      ..+.........+++..++.. .++....+.|.+++.. .++..........+++++|
T Consensus       155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l-~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL-WVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E-EEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE-EEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            5543333222222211      112222234678888888864 5555678899999865 4443333333347899999


Q ss_pred             -CCCCCEEEE
Q psy13076        271 -SPSGSHFAS  279 (423)
Q Consensus       271 -s~~g~~l~s  279 (423)
                       -|+.+.|..
T Consensus       233 gg~~~~~L~v  242 (246)
T PF08450_consen  233 GGPDGKTLYV  242 (246)
T ss_dssp             ESTTSSEEEE
T ss_pred             ECCCCCEEEE
Confidence             466555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914|consensus

Probab=98.66  E-value=3.8e-07  Score=80.30  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=99.8

Q ss_pred             EEEEECCCCCEEEEEEecCeEEEEECCCccc----eecccccccCCCeEEEEECCCCCeEEE---EeCCCcEEEEecCCc
Q psy13076        266 QAVRYSPSGSHFASAGFDGKVFLYDGASADL----VSELGNPAHKGGVYAVAWKPDGTQLLT---ASGDKTCKLWDIETK  338 (423)
Q Consensus       266 ~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~~~i~~l~~~~~~~~l~s---~s~d~~i~iwd~~~~  338 (423)
                      .....+|.++++|.+..+....+++......    ......   ....+++.|..+......   +++...+.+|....+
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v---~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV---PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec---ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            3456778899999999888887777654332    111111   112234444444433333   344455666665555


Q ss_pred             ceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEE
Q psy13076        339 SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR  418 (423)
Q Consensus       339 ~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~  418 (423)
                      .+..  .+++-.....+.+++|+++++++..|..|++-+.......-.-.-||..-|..++.-++ ..|+|+|.|+++++
T Consensus       143 ~~~~--~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  143 RCEP--ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             Ccch--hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            4432  23333444567778899999999999999998776543322335699999999999865 45899999999999


Q ss_pred             eeCC
Q psy13076        419 WNAK  422 (423)
Q Consensus       419 W~~~  422 (423)
                      ||..
T Consensus       220 Wd~~  223 (390)
T KOG3914|consen  220 WDIT  223 (390)
T ss_pred             Eecc
Confidence            9975

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.64  E-value=1.6e-06  Score=74.02  Aligned_cols=159  Identities=18%  Similarity=0.232  Sum_probs=104.0

Q ss_pred             cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccce-eccccccc-----CCCeEEEEECCCC-CeEEEEeCCCcEE
Q psy13076        259 QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV-SELGNPAH-----KGGVYAVAWKPDG-TQLLTASGDKTCK  331 (423)
Q Consensus       259 ~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~-----~~~i~~l~~~~~~-~~l~s~s~d~~i~  331 (423)
                      ..|...|.++.|+.|...++++ .|-.|.+|++.-.... .....+.|     ...|++..|+|.. +.+.=.+..|+|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            4677789999999998888865 5778999987543211 11111123     2347889999965 4555567789999


Q ss_pred             EEecCCccee-------eeeeeC--------ceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCC----
Q psy13076        332 LWDIETKSAV-------SEFLMG--------NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN----  392 (423)
Q Consensus       332 iwd~~~~~~i-------~~~~~~--------~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~----  392 (423)
                      +-|++...+-       .....+        .......+.++++|.++++-+. ..+++||++....|+++..-|.    
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence            9999853221       111111        0112233455667887775432 5789999999888888764442    


Q ss_pred             --------Ccee---EEEecCCCCeEEEecCCCcEEEe
Q psy13076        393 --------KPIT---ALALSPDRGTVFTGSHDGFITRW  419 (423)
Q Consensus       393 --------~~v~---~i~~sp~~~~l~s~s~D~~i~~W  419 (423)
                              ..|.   .+.||-|.+.++|||-....-++
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence                    3443   58899999999999876665555

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.64  E-value=0.00028  Score=66.52  Aligned_cols=310  Identities=12%  Similarity=0.111  Sum_probs=162.2

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceee-cccccC--------ce-eEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRV-IKGHNK--------PI-TALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~gh~~--------~V-~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      +++.+.+++.+|.+.-+|..++...-.. +.+..+        .+ ..+..  .+..++.++.++.+.-+|.++++.+=.
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            5777787888888888888765443321 111000        00 01111  355677888999999999999876433


Q ss_pred             ccCCC--CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEE-EEECC--CCCEEEEEccCCcEEEEE
Q psy13076         85 LPRTQ--RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV-AKYSP--SGFYIASGDISGKVRIWD  159 (423)
Q Consensus        85 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~-~~~sp--~~~~l~s~~~d~~i~vwd  159 (423)
                      .....  ...+++.    ++..++...+..+...|.++++....+......+.. ..-+|  .+..++.+..++.+...|
T Consensus       146 ~~~~~~~~ssP~v~----~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d  221 (394)
T PRK11138        146 TKVAGEALSRPVVS----DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL  221 (394)
T ss_pred             ccCCCceecCCEEE----CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence            32111  1111111    334444444556777788777776655422111000 00122  123455566788888888


Q ss_pred             cCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe
Q psy13076        160 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS  239 (423)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s  239 (423)
                      .++++..+......           |.+..-+         ..+.         .  ....++    +.  +. .++.++
T Consensus       222 ~~~G~~~W~~~~~~-----------~~~~~~~---------~~~~---------~--~~~sP~----v~--~~-~vy~~~  263 (394)
T PRK11138        222 MEQGQLIWQQRISQ-----------PTGATEI---------DRLV---------D--VDTTPV----VV--GG-VVYALA  263 (394)
T ss_pred             ccCChhhheecccc-----------CCCccch---------hccc---------c--cCCCcE----EE--CC-EEEEEE
Confidence            87776554322111           0000000         0000         0  000011    00  11 244455


Q ss_pred             CCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC
Q psy13076        240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT  319 (423)
Q Consensus       240 ~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~  319 (423)
                      .++.+..+|....+.........  ...+.  ..+..+..++.+|.+..+|.++++.+.......+ ....+...  .+.
T Consensus       264 ~~g~l~ald~~tG~~~W~~~~~~--~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g  336 (394)
T PRK11138        264 YNGNLVALDLRSGQIVWKREYGS--VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RLLTAPVL--YNG  336 (394)
T ss_pred             cCCeEEEEECCCCCEEEeecCCC--ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-CcccCCEE--ECC
Confidence            66777777665544433322111  11111  2456777788899999999998876544321111 11122222  245


Q ss_pred             eEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEe
Q psy13076        320 QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLD  377 (423)
Q Consensus       320 ~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~  377 (423)
                      .|+.++.||.+.+.|..+++.+.+.......  ..-+....+..|..++.+|.++.++
T Consensus       337 ~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~--~~s~P~~~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        337 YLVVGDSEGYLHWINREDGRFVAQQKVDSSG--FLSEPVVADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEEEcCCCc--ceeCCEEECCEEEEEeCCceEEEEe
Confidence            6778899999999999999887766432111  0111122466788888899887764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.63  E-value=8.1e-05  Score=65.20  Aligned_cols=207  Identities=15%  Similarity=0.223  Sum_probs=123.8

Q ss_pred             CCeEEEEecCCCcccc--------cccCCcceEEEEEECCCCCEEEEEcc-----CCcEEEEEcCCCceeEEeeecCCCC
Q psy13076        110 GNSVIIRNIENPAISD--------IYTEHSCAVNVAKYSPSGFYIASGDI-----SGKVRIWDTVNKEHILKNEFHPIGG  176 (423)
Q Consensus       110 ~~~~~i~~~~~~~~~~--------~~~~h~~~i~~~~~sp~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~  176 (423)
                      +....++|..++....        .|.||      ..|||||++|++.-.     .|.|-|||.... .....++...+-
T Consensus        27 G~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~~s~GI   99 (305)
T PF07433_consen   27 GTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEFPSHGI   99 (305)
T ss_pred             CcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEecCCCc
Confidence            3455566666555443        34455      469999999998643     578999999732 223345554444


Q ss_pred             CeeEEEECCCCCeEEEEEcCCcee----------------eEEEeecCCcceec--c--cCCCcceeEEEEecCCCeeEE
Q psy13076        177 PIKDIAWSPDNQRMVVVGEGRERF----------------GHVFMSETGTSVGE--I--SGQSKPINSCDFKPSRPFRII  236 (423)
Q Consensus       177 ~v~~v~~s~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~~~~  236 (423)
                      .-..+.+.|||+.|+++..+-...                ..+.+..+|..+..  +  ..+..+|..+++.+++... .
T Consensus       100 GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~-~  178 (305)
T PF07433_consen  100 GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVA-F  178 (305)
T ss_pred             ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEE-E
Confidence            456788999999988876432111                11223455555544  4  2355678888888876532 2


Q ss_pred             EEeCCC-------eEEEEcCCC-ceeee----eccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceeccccc
Q psy13076        237 TGSEDN-------TIAVFEGPP-FKFKM----TKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNP  303 (423)
Q Consensus       237 s~s~d~-------~i~~~~~~~-~~~~~----~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~  303 (423)
                      ..-..+       .+.++.... .....    .......++-+++++++|.++++.+ ..+.+.+||..+++.+..... 
T Consensus       179 a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-  257 (305)
T PF07433_consen  179 AMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-  257 (305)
T ss_pred             EEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-
Confidence            222211       122232111 11100    1123457899999999999887777 467899999999988765532 


Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076        304 AHKGGVYAVAWKPDGTQLLTASGDKTC  330 (423)
Q Consensus       304 ~~~~~i~~l~~~~~~~~l~s~s~d~~i  330 (423)
                         ..+..++-.+++ +++|.+. |.+
T Consensus       258 ---~D~cGva~~~~~-f~~ssG~-G~~  279 (305)
T PF07433_consen  258 ---PDACGVAPTDDG-FLVSSGQ-GQL  279 (305)
T ss_pred             ---CceeeeeecCCc-eEEeCCC-ccE
Confidence               345677777766 6666543 443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.62  E-value=1.8e-05  Score=74.61  Aligned_cols=173  Identities=9%  Similarity=0.044  Sum_probs=105.3

Q ss_pred             EEeCCE-EEEEecc---ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeE-EEecCC--CceEEeecCCcceeecc
Q psy13076         13 LWQGDY-LLTVSLS---GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV-FTGSHD--GFITRWNAKTEYIFATL   85 (423)
Q Consensus        13 ~~~~~~-~~~~~~d---g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l-~sg~~D--~~i~vW~~~~~~~~~~~   85 (423)
                      ++||+. ++..+..   ..|+++|+.++ + ...+....+.+....|+|||+.| ++.+.+  ..|.++|+.++.... +
T Consensus       196 SpDG~~~i~y~s~~~~~~~Iyv~dl~tg-~-~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-L  272 (419)
T PRK04043        196 ANKEQTAFYYTSYGERKPTLYKYNLYTG-K-KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-I  272 (419)
T ss_pred             CCCCCcEEEEEEccCCCCEEEEEECCCC-c-EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-c
Confidence            448885 5544444   56888888653 2 22333344556678899999755 444434  457777887775433 2


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCC----eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC---------
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGN----SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---------  152 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d---------  152 (423)
                      ... .+......++|+|+.+++.++.    .+.+.+++++....+...-..   ...|+|||++++-....         
T Consensus       273 T~~-~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~  348 (419)
T PRK04043        273 TNY-PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN---NSSVSTYKNYIVYSSRETNNEFGKNT  348 (419)
T ss_pred             ccC-CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc---CceECCCCCEEEEEEcCCCcccCCCC
Confidence            211 2223345689999888776532    677788887776554432111   23899999988776543         


Q ss_pred             CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076        153 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       153 ~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                      ..|.+.|+.+++... ...   ........|+|||+.++.....
T Consensus       349 ~~I~v~d~~~g~~~~-LT~---~~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        349 FNLYLISTNSDYIRR-LTA---NGVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             cEEEEEECCCCCeEE-CCC---CCCcCCeEECCCCCEEEEEEcc
Confidence            256777876654321 111   1223357899999988877644

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.62  E-value=0.00019  Score=62.89  Aligned_cols=206  Identities=17%  Similarity=0.205  Sum_probs=123.7

Q ss_pred             CCeEEEEecCCCcccccccCCcceEEEEEEC-CCCCEEEEEccCCcEEEEEcCCCceeEEeeec--C-CCCCeeEEEECC
Q psy13076        110 GNSVIIRNIENPAISDIYTEHSCAVNVAKYS-PSGFYIASGDISGKVRIWDTVNKEHILKNEFH--P-IGGPIKDIAWSP  185 (423)
Q Consensus       110 ~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~s-p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~-~~~~v~~v~~s~  185 (423)
                      +..+..++.+++..... ...  ....+.+. +++.++++ .. +.+.++|..+++........  . .....+++++.|
T Consensus        21 ~~~i~~~~~~~~~~~~~-~~~--~~~G~~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~   95 (246)
T PF08450_consen   21 GGRIYRVDPDTGEVEVI-DLP--GPNGMAFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP   95 (246)
T ss_dssp             TTEEEEEETTTTEEEEE-ESS--SEEEEEEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T
T ss_pred             CCEEEEEECCCCeEEEE-ecC--CCceEEEEccCCEEEEE-Ec-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC
Confidence            45666666665543321 111  15666777 67655554 44 44566698776543322221  1 234578999999


Q ss_pred             CCCeEEEEEcCCc--ee--eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC--Cc--eeee-
Q psy13076        186 DNQRMVVVGEGRE--RF--GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP--PF--KFKM-  256 (423)
Q Consensus       186 ~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~--~~--~~~~-  256 (423)
                      +|...++......  ..  +.++..+.......+.......+.++|+|++..+.++-+..+.|..|+..  ..  .... 
T Consensus        96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~  175 (246)
T PF08450_consen   96 DGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRV  175 (246)
T ss_dssp             TS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeee
Confidence            9996665443221  11  44554444433333433445678999999998777788888999988753  22  1111 


Q ss_pred             --eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEE-CCCCCeEEE
Q psy13076        257 --TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW-KPDGTQLLT  323 (423)
Q Consensus       257 --~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~~l~s  323 (423)
                        .........-.+++.++|.+.++.-..+.|.+++.. ++.+..+..+  ...+++++| .|+.+.|..
T Consensus       176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP--VPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEE
T ss_pred             EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEE
Confidence              122222346789999999888877778999999976 8877776544  247899999 466555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.59  E-value=0.00027  Score=66.64  Aligned_cols=137  Identities=12%  Similarity=0.140  Sum_probs=84.4

Q ss_pred             CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEee
Q psy13076        274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ  353 (423)
Q Consensus       274 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~  353 (423)
                      +..+..++.+|.+.-+|..+++.+.+...    +....+..  .+..+..++.++.+..+|..+++.+-.......... 
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~-  328 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREY----GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLL-  328 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecC----CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcc-
Confidence            45666777899999999999987655432    11112222  455677778899999999998875433211100000 


Q ss_pred             EEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeE-EEecCCCCeEEEecCCCcEEEeeC
Q psy13076        354 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITA-LALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       354 ~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~-i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                       -+....+..+..++.+|.++.+|..+++. +...+-....+.+ -.+  .+..|+.++.||.+..++.
T Consensus       329 -~sp~v~~g~l~v~~~~G~l~~ld~~tG~~-~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        329 -TAPVLYNGYLVVGDSEGYLHWINREDGRF-VAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             -cCCEEECCEEEEEeCCCEEEEEECCCCCE-EEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence             01112467788899999999999888643 3333222223332 111  3557888899999988764

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.53  E-value=0.00015  Score=69.59  Aligned_cols=179  Identities=18%  Similarity=0.197  Sum_probs=106.1

Q ss_pred             ECCCCCEEEE-EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccC
Q psy13076        139 YSPSGFYIAS-GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG  217 (423)
Q Consensus       139 ~sp~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (423)
                      +.|||+.+.. .-..+.+.+.|.++.+.......   .+....++++|+|+++++.+...+         .+..+..+..
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V---dgnpd~v~~spdGk~afvTsyNsE---------~G~tl~em~a  267 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV---DGNLDNVDTDYDGKYAFSTCYNSE---------EGVTLAEMMA  267 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEe---CCCcccceECCCCCEEEEeccCcc---------cCcceeeecc
Confidence            4456654432 22345666667665544433332   234467899999999888753221         1222222211


Q ss_pred             CCcceeEEEE--------ecCCCeeEEEEeCCCeEEEEcCCC-----ceeeeeccccccCeEEEEECCCCCEEEEEE-ec
Q psy13076        218 QSKPINSCDF--------KPSRPFRIITGSEDNTIAVFEGPP-----FKFKMTKQEHSRFVQAVRYSPSGSHFASAG-FD  283 (423)
Q Consensus       218 ~~~~i~~~~~--------~~~~~~~~~s~s~d~~i~~~~~~~-----~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~d  283 (423)
                      .... ..+.|        .+++.+..+   .++.+.+.|...     ....... ......-.++++|||+++++++ .+
T Consensus       268 ~e~d-~~vvfni~~iea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS  342 (635)
T PRK02888        268 AERD-WVVVFNIARIEEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLS  342 (635)
T ss_pred             ccCc-eEEEEchHHHHHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCC
Confidence            1111 22223        234555444   256788888765     3333222 2233456789999999876665 58


Q ss_pred             CeEEEEECCCccc------------eecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076        284 GKVFLYDGASADL------------VSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       284 g~i~vwd~~~~~~------------~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~  337 (423)
                      ..|-|.|..+.+.            ..+..   -.......+|+++|+...|-.-|..|-.||+..
T Consensus       343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaeve---vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPE---LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CcEEEEEChhhhhhhhccCCccceEEEeec---cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            8999999877553            11211   123345788999999888888999999999876

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.50  E-value=5.9e-05  Score=65.67  Aligned_cols=183  Identities=16%  Similarity=0.144  Sum_probs=109.5

Q ss_pred             EEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecc-ccccc-CCCeEEE
Q psy13076        235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL-GNPAH-KGGVYAV  312 (423)
Q Consensus       235 ~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~-~~~i~~l  312 (423)
                      +++++.++.+..+|..+.+...............  ...+..++.++.++.++.+|.++|+...+. ..... .......
T Consensus        39 v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~  116 (238)
T PF13360_consen   39 VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSS  116 (238)
T ss_dssp             EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--S
T ss_pred             EEEEcCCCEEEEEECCCCCEEEEeecccccccee--eecccccccccceeeeEecccCCcceeeeecccccccccccccc
Confidence            4555778888888876666655444311111111  123456666778889999999999987763 21100 0112223


Q ss_pred             EECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEe--------eEEEEEecCcEEEEEeCCCcEEEEecCCCCCc
Q psy13076        313 AWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVED--------QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP  384 (423)
Q Consensus       313 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~--------~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~  384 (423)
                      ....++..++.+..++.|..+|.++++.+-.+....+...        ....+...+..+...+.++.+.-+|..+++..
T Consensus       117 ~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~  196 (238)
T PF13360_consen  117 SPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKL  196 (238)
T ss_dssp             EEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEE
T ss_pred             CceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEE
Confidence            3333477888888899999999999998777654332111        11222234447777777776444488876532


Q ss_pred             eEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        385 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       385 ~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                         +......+..+ ..+++..|+.++.|+.+..||++|
T Consensus       197 ---w~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  197 ---WSKPISGIYSL-PSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             ---EEECSS-ECEC-EECCCTEEEEEETTTEEEEEETTT
T ss_pred             ---EEecCCCccCC-ceeeCCEEEEEeCCCEEEEEECCC
Confidence               22112223331 356777888777999999999876

...

>KOG1275|consensus

Probab=98.49  E-value=4e-06  Score=81.40  Aligned_cols=179  Identities=21%  Similarity=0.302  Sum_probs=122.4

Q ss_pred             eEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEE
Q psy13076        234 RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVA  313 (423)
Q Consensus       234 ~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~  313 (423)
                      .++.|+....+..+|..+.+...........+.-++  .+++++.+|...|+|.+-|.++.+.++++  .+|.+.|.++.
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~--~aHs~siSDfD  224 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTF--DAHSGSISDFD  224 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeee--eccccceeeee
Confidence            366666666777777766555444333332344443  46789999999999999999999998888  47999887665


Q ss_pred             ECCCCCeEEEEeC---------CCcEEEEecCCcceeeeeeeCceeEeeEEEEEe-cCcEEEEEeCCCcEEEEecCCCCC
Q psy13076        314 WKPDGTQLLTASG---------DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW-QGDYLLTVSLSGFISYLDVNNPST  383 (423)
Q Consensus       314 ~~~~~~~l~s~s~---------d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~i~~~~~~~~~~  383 (423)
                      .  .|+.|+++|.         |..|++||++.-+.+.-......  ..-+.+.| --..++.++..|...+.|..+..+
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeeccccccCC
Confidence            4  6889998875         44589999987665433211111  11111122 245678888999998888443322


Q ss_pred             c---eEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        384 P---IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       384 ~---~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      |   ++...-....+..+++|+.+..++.|-.+|.|.+|-
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            2   233333344599999999999999999999999996

>KOG1645|consensus

Probab=98.48  E-value=1.8e-05  Score=70.08  Aligned_cols=94  Identities=18%  Similarity=0.210  Sum_probs=69.6

Q ss_pred             EEEEeccCCCCceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEE
Q psy13076         28 ISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFL  106 (423)
Q Consensus        28 i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (423)
                      ++.++..+ .++...+.+|..-|..++|+|... ++..++-+.+|+|.|+++..+..+                      
T Consensus       175 v~~l~~~~-fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss----------------------  231 (463)
T KOG1645|consen  175 VQKLESHD-FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS----------------------  231 (463)
T ss_pred             eEEeccCC-cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh----------------------
Confidence            55555433 445556778999999999999766 788899999999999987543322                      


Q ss_pred             EecCCeEEEEecCCCcccccccCCcceEEEEEECCCC-CEEEEEccCCcEEEEEcCCCce
Q psy13076        107 YTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus       107 ~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                                          +..| ..+++++|.-|. .++..|...|.|.+||++..+.
T Consensus       232 --------------------y~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  232 --------------------YIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             --------------------eecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence                                2223 467888888754 5778888999999999986543

>KOG2695|consensus

Probab=98.45  E-value=9.2e-07  Score=76.45  Aligned_cols=116  Identities=14%  Similarity=0.122  Sum_probs=84.9

Q ss_pred             CCEEEEEeccceEEEEeccCC----CCceeecccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeecccCCCC
Q psy13076         16 GDYLLTVSLSGFISYLDVNNP----STPIRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQR   90 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~----~~~~~~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~   90 (423)
                      +.++..|.+.|.|-..|++..    ..+.+.| -|.+.|+++..-. +++.|.+.+.+|+|++||..-.++         
T Consensus       264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~---------  333 (425)
T KOG2695|consen  264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC---------  333 (425)
T ss_pred             CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc---------
Confidence            688999999999999999864    3344333 3899999999888 788999999999999999864322         


Q ss_pred             CCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEE--EECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         91 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVA--KYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~--~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                                                    ++.+..+.||.+.-.-+  ...+....+++++.|...|+|.++.+..+..
T Consensus       334 ------------------------------~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  334 ------------------------------KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             ------------------------------ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence                                          11233456665433222  3456667888899999999999988766544


Q ss_pred             eee
Q psy13076        169 NEF  171 (423)
Q Consensus       169 ~~~  171 (423)
                      ..+
T Consensus       384 ipf  386 (425)
T KOG2695|consen  384 IPF  386 (425)
T ss_pred             cCC
Confidence            433

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.39  E-value=0.0012  Score=61.12  Aligned_cols=281  Identities=15%  Similarity=0.200  Sum_probs=137.2

Q ss_pred             CeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC-------C---------
Q psy13076        111 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP-------I---------  174 (423)
Q Consensus       111 ~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-------~---------  174 (423)
                      ....+++++++........ ...+....|+|+|+.+|-.. ++.|.+++..++.... ....+       .         
T Consensus        23 ~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHT
T ss_pred             eeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE-eccccceeEEcCccceeccccc
Confidence            3566788888766665554 45677889999999998875 5789999876653221 11111       0         


Q ss_pred             CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCc
Q psy13076        175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGPPF  252 (423)
Q Consensus       175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~  252 (423)
                      -+.-..+-||||+++++....+......+..........    .--.+..+.+..-+       ..+-  .+.+++....
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~----~yp~~~~~~YPk~G-------~~np~v~l~v~~~~~~  168 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS----QYPEVESIRYPKAG-------DPNPRVSLFVVDLASG  168 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----SS-EEEEEE--BTT-------S---EEEEEEEESSST
T ss_pred             cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----cCCcccccccCCCC-------CcCCceEEEEEECCCC
Confidence            112356889999999988754433222221111100000    00012222222111       1111  3445555443


Q ss_pred             eee-ee----ccccccCeEEEEECCCCCEEEEEEec--C---eEEEEECCCccceecccccccCCCe---EEEEEC-CCC
Q psy13076        253 KFK-MT----KQEHSRFVQAVRYSPSGSHFASAGFD--G---KVFLYDGASADLVSELGNPAHKGGV---YAVAWK-PDG  318 (423)
Q Consensus       253 ~~~-~~----~~~~~~~i~~l~~s~~g~~l~s~s~d--g---~i~vwd~~~~~~~~~~~~~~~~~~i---~~l~~~-~~~  318 (423)
                      +.. ..    .......+..+.|.++++.|+..-.+  .   .+.+.|..++....... ....+.+   ....|. +++
T Consensus       169 ~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv~~~~~~~~~~~~~  247 (353)
T PF00930_consen  169 KTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWVDVYDPPHFLGPDG  247 (353)
T ss_dssp             CCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSSSSSSEEEE-TTTS
T ss_pred             cEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcceeeecccccccCCC
Confidence            321 11    12345678899999999844443333  2   35667776655432221 1223333   245554 555


Q ss_pred             -CeEEEEeCCCcEEEE--ecCCcceeeeeeeCceeEe-eEEEEEecCcEEE-EEeC----CCcEEEEecCCCCCceEEec
Q psy13076        319 -TQLLTASGDKTCKLW--DIETKSAVSEFLMGNQVED-QQVSCLWQGDYLL-TVSL----SGFISYLDVNNPSTPIRVIK  389 (423)
Q Consensus       319 -~~l~s~s~d~~i~iw--d~~~~~~i~~~~~~~~~~~-~~~~~~~~g~~l~-~~~~----~~~i~~~~~~~~~~~~~~~~  389 (423)
                       .+|.....||--+|+  +...+. ...+..+ .... .......+++.|. ++..    ...++..++.. ....+.+.
T Consensus       248 ~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~-~~~~~~LT  324 (353)
T PF00930_consen  248 NEFLWISERDGYRHLYLYDLDGGK-PRQLTSG-DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS-GGEPKCLT  324 (353)
T ss_dssp             SEEEEEEETTSSEEEEEEETTSSE-EEESS-S-SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE-TTEEEESS
T ss_pred             CEEEEEEEcCCCcEEEEEcccccc-eeccccC-ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC-CCCeEecc
Confidence             455555677765555  444443 2222222 2222 2233344555554 3333    22455555551 23344444


Q ss_pred             cCCCceeEEEecCCCCeEEE
Q psy13076        390 GHNKPITALALSPDRGTVFT  409 (423)
Q Consensus       390 ~h~~~v~~i~~sp~~~~l~s  409 (423)
                      ...+.-.++.|||++++++-
T Consensus       325 ~~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  325 CEDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             TTSSTTEEEEE-TTSSEEEE
T ss_pred             CCCCCceEEEECCCCCEEEE
Confidence            33332369999999999763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1275|consensus

Probab=98.39  E-value=4e-06  Score=81.38  Aligned_cols=146  Identities=16%  Similarity=0.254  Sum_probs=101.4

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecC---------CCceEEeecCCc
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH---------DGFITRWNAKTE   79 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~---------D~~i~vW~~~~~   79 (423)
                      ++-+.+.++++.+|...|.|-+.|++. .++++++.+|.+.|.  .|.-.|.+|+|+|.         |.-|+|||+..-
T Consensus       180 v~imR~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  180 VTIMRYNNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             eEEEEecCcEEEeecccceEEeecCCc-Cceeeeeecccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhh
Confidence            445556889999999999999999975 778999999999996  55667889999874         677899999876


Q ss_pred             ceeecccCCCCCCceEEeeCCC--CCeEEEecCCeEEEEe---cCCCcc-cccccCCcceEEEEEECCCCCEEEEEccCC
Q psy13076         80 YIFATLPRTQRGQPIVLGGDPK--GKNFLYTNGNSVIIRN---IENPAI-SDIYTEHSCAVNVAKYSPSGFYIASGDISG  153 (423)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~---~~~~~~-~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~  153 (423)
                      +.+..++-..  .+-.+.+.|.  .+..+++......+-+   +.++.. ........+.+...+++++++.+|.|..+|
T Consensus       257 ral~PI~~~~--~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g  334 (1118)
T KOG1275|consen  257 RALSPIQFPY--GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEG  334 (1118)
T ss_pred             hccCCccccc--CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccC
Confidence            6555443221  1122344443  2333344333333334   334422 222222234589999999999999999999


Q ss_pred             cEEEEE
Q psy13076        154 KVRIWD  159 (423)
Q Consensus       154 ~i~vwd  159 (423)
                      .|.+|.
T Consensus       335 ~v~~wa  340 (1118)
T KOG1275|consen  335 HVNLWA  340 (1118)
T ss_pred             cEeeec
Confidence            999997

>KOG2114|consensus

Probab=98.36  E-value=0.00021  Score=69.50  Aligned_cols=204  Identities=15%  Similarity=0.187  Sum_probs=127.7

Q ss_pred             EEEeCCEEEEEeccceEEEEeccCCCCceeecccccCc-eeEEEEeCCCCeEEEecCCCc-----eEEeecCCcceeecc
Q psy13076         12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP-ITALALSPDRGTVFTGSHDGF-----ITRWNAKTEYIFATL   85 (423)
Q Consensus        12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~-V~~l~~~~~~~~l~sg~~D~~-----i~vW~~~~~~~~~~~   85 (423)
                      |.+.++.++-|+.+|.|.+++-.  .+.++-|++|... |..+..-.+..+|++-+.|+.     +++|+++..+     
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-----  103 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-----  103 (933)
T ss_pred             EcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-----
Confidence            44689999999999999998743  4555788888877 655555555578999877765     8999987531     


Q ss_pred             cCCCCCC-ceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcC--C
Q psy13076         86 PRTQRGQ-PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV--N  162 (423)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~--~  162 (423)
                          .+. +..+.              ..++....+|       .-..++.+++.+.+-+.+|.|=.+|.|..+.-.  .
T Consensus       104 ----~n~sP~c~~--------------~~ri~~~~np-------~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R  158 (933)
T KOG2114|consen  104 ----KNNSPQCLY--------------EHRIFTIKNP-------TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR  158 (933)
T ss_pred             ----CCCCcceee--------------eeeeeccCCC-------CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh
Confidence                000 11100              1122221111       124578889999999999999999999988532  1


Q ss_pred             CceeEEeeecCCCCCeeEEEECCCCCeE-EEEEcCCceeeEEEeecCCc--ceecccCCCcceeEEEEecCCCeeEEEEe
Q psy13076        163 KEHILKNEFHPIGGPIKDIAWSPDNQRM-VVVGEGRERFGHVFMSETGT--SVGEISGQSKPINSCDFKPSRPFRIITGS  239 (423)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~s~s  239 (423)
                      .........+....+|+.+++..+++.+ +++...+   ..++... ++  ....+..+..+.+|..+++.... ++.+ 
T Consensus       159 Drgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~---V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca-  232 (933)
T KOG2114|consen  159 DRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQ---VMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQ-FICA-  232 (933)
T ss_pred             ccccceeeeccCCCCceeeEEecCCceeEEEEecce---eEEEEec-CCCcceeeeccCCccceeeecCCCCcc-EEEe-
Confidence            1112222334456899999999998883 3333332   2233332 22  24446667778888888876653 3333 


Q ss_pred             CCCeEEEEcCCCce
Q psy13076        240 EDNTIAVFEGPPFK  253 (423)
Q Consensus       240 ~d~~i~~~~~~~~~  253 (423)
                      .+..+..|+....+
T Consensus       233 ~~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  233 GSEFLYFYDSDGRG  246 (933)
T ss_pred             cCceEEEEcCCCcc
Confidence            34567888765443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.33  E-value=0.0013  Score=60.87  Aligned_cols=254  Identities=15%  Similarity=0.166  Sum_probs=125.9

Q ss_pred             CCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc-cC-------C--------
Q psy13076         67 HDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TE-------H--------  130 (423)
Q Consensus        67 ~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~-------h--------  130 (423)
                      ..+.+.++|++++........  ......+.++|+|+.+++..++.+.+.+..++.....- .|       -        
T Consensus        21 ~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred             cceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence            346788899998765543322  34455678999999999999999999887655333211 11       0        


Q ss_pred             -cceEEEEEECCCCCEEEEEccC-CcEEEEE-----------------------------------cCCCceeEEe-e--
Q psy13076        131 -SCAVNVAKYSPSGFYIASGDIS-GKVRIWD-----------------------------------TVNKEHILKN-E--  170 (423)
Q Consensus       131 -~~~i~~~~~sp~~~~l~s~~~d-~~i~vwd-----------------------------------~~~~~~~~~~-~--  170 (423)
                       -..-..+.||||+++||....| ..++.+.                                   +.+++..... .  
T Consensus        99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~  178 (353)
T PF00930_consen   99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNS  178 (353)
T ss_dssp             TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HH
T ss_pred             ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccc
Confidence             1122457799999999987654 3333332                                   2111110000 0  


Q ss_pred             ecCCCCCeeEEEECCCCCeEEEEEcCCc---eeeEEEeecCCcceeccc----CCCcceeEEEEe-cCCCeeEEEEeCCC
Q psy13076        171 FHPIGGPIKDIAWSPDNQRMVVVGEGRE---RFGHVFMSETGTSVGEIS----GQSKPINSCDFK-PSRPFRIITGSEDN  242 (423)
Q Consensus       171 ~~~~~~~v~~v~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~-~~~~~~~~s~s~d~  242 (423)
                      ......-+..+.|.++++.+++.-..+.   ......+..++.......    +-........+. +++...+.....+|
T Consensus       179 ~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G  258 (353)
T PF00930_consen  179 LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG  258 (353)
T ss_dssp             HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS
T ss_pred             cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC
Confidence            0011123557888888884444433222   122223333332211111    111112233343 55554454444666


Q ss_pred             e--EEEEcCCCceeeeeccccccCe-EEEEECCCCCEE-EEEEecC----eEEEEECCCccceecccccccCCCeEEEEE
Q psy13076        243 T--IAVFEGPPFKFKMTKQEHSRFV-QAVRYSPSGSHF-ASAGFDG----KVFLYDGASADLVSELGNPAHKGGVYAVAW  314 (423)
Q Consensus       243 ~--i~~~~~~~~~~~~~~~~~~~~i-~~l~~s~~g~~l-~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~  314 (423)
                      -  |.+++....... .+....-.| .-+.++++++.+ .++..++    .+..-++..+.....+...  .+.-..++|
T Consensus       259 ~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~--~~~~~~~~~  335 (353)
T PF00930_consen  259 YRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE--DGDHYSASF  335 (353)
T ss_dssp             SEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT--SSTTEEEEE
T ss_pred             CcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC--CCCceEEEE
Confidence            4  444454443322 233333335 347788887755 4555433    4555566623333444321  111168999


Q ss_pred             CCCCCeEEEEe
Q psy13076        315 KPDGTQLLTAS  325 (423)
Q Consensus       315 ~~~~~~l~s~s  325 (423)
                      ||++++++-..
T Consensus       336 Spdg~y~v~~~  346 (353)
T PF00930_consen  336 SPDGKYYVDTY  346 (353)
T ss_dssp             -TTSSEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            99999887543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.27  E-value=0.00054  Score=65.83  Aligned_cols=182  Identities=12%  Similarity=0.112  Sum_probs=103.5

Q ss_pred             EEEEEECCCCCEEEEEccC----CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC-
Q psy13076        134 VNVAKYSPSGFYIASGDIS----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-  208 (423)
Q Consensus       134 i~~~~~sp~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-  208 (423)
                      ...++++|+|+++.+.+.+    .++..-+..+..........      ...++.++|++..+.    .....+++..+ 
T Consensus       237 pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~------~iea~vkdGK~~~V~----gn~V~VID~~t~  306 (635)
T PRK02888        237 LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA------RIEEAVKAGKFKTIG----GSKVPVVDGRKA  306 (635)
T ss_pred             cccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH------HHHHhhhCCCEEEEC----CCEEEEEECCcc
Confidence            3567899999999888642    22333332222211110000      001334567765542    12233444444 


Q ss_pred             ---CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee------------eeeccccccCeEEEEECCC
Q psy13076        209 ---GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF------------KMTKQEHSRFVQAVRYSPS  273 (423)
Q Consensus       209 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~------------~~~~~~~~~~i~~l~~s~~  273 (423)
                         +..+.....-.+....++++|++.+.++++..++++.++|....+.            ..+.+. .......+|+++
T Consensus       307 ~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~  385 (635)
T PRK02888        307 ANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGR  385 (635)
T ss_pred             ccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCC
Confidence               2233333345567788999999999888888899999999765431            111111 222356789999


Q ss_pred             CCEEEEEEecCeEEEEECCCc----------cceeccc---ccccCCCeEEEEECCCCCeEEEEeC
Q psy13076        274 GSHFASAGFDGKVFLYDGASA----------DLVSELG---NPAHKGGVYAVAWKPDGTQLLTASG  326 (423)
Q Consensus       274 g~~l~s~s~dg~i~vwd~~~~----------~~~~~~~---~~~~~~~i~~l~~~~~~~~l~s~s~  326 (423)
                      |..+.+---|.+|..|++.+.          ..+.++.   .++|.....+=.-.|+|++|++...
T Consensus       386 G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        386 GNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             CCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            988888888999999997651          2222221   1233222222233678999988644

>KOG2066|consensus

Probab=98.25  E-value=0.00011  Score=70.81  Aligned_cols=148  Identities=24%  Similarity=0.341  Sum_probs=95.3

Q ss_pred             CCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCC
Q psy13076        140 SPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQS  219 (423)
Q Consensus       140 sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (423)
                      ..+|+|++||+.||+|.|-.+.+.+......++   -++.+++++|+-..                              
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~---rpiksial~Pd~~~------------------------------  126 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK---RPIKSIALHPDFSR------------------------------  126 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeEecC---CcceeEEeccchhh------------------------------
Confidence            446999999999999999888776655444443   57888888887100                              


Q ss_pred             cceeEEEEecCCCeeEEEEeCCCeEEEEcCCC--ceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccce
Q psy13076        220 KPINSCDFKPSRPFRIITGSEDNTIAVFEGPP--FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV  297 (423)
Q Consensus       220 ~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~--~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~  297 (423)
                                ...-++++|+..| +.+++-.=  .+-...+....++|.++.|.  |.++|=++.+| |+++|..+++.+
T Consensus       127 ----------~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l  192 (846)
T KOG2066|consen  127 ----------QQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRL  192 (846)
T ss_pred             ----------hhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEecccccee
Confidence                      0111355666666 55554211  11111344566789999885  77899888777 899999888876


Q ss_pred             eccccccc----CCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        298 SELGNPAH----KGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       298 ~~~~~~~~----~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      ..+..+..    ......+.|.++.+ |+.| +-.+|+|..++
T Consensus       193 ~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  193 TNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK  233 (846)
T ss_pred             eccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence            65543211    11234677876654 4444 44579998887

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.25  E-value=0.00038  Score=60.56  Aligned_cols=143  Identities=19%  Similarity=0.165  Sum_probs=83.9

Q ss_pred             cceEEEEeccCCCCceee-cc-cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCC
Q psy13076         25 SGFISYLDVNNPSTPIRV-IK-GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG  102 (423)
Q Consensus        25 dg~i~~~d~~~~~~~~~~-~~-gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (423)
                      +|.|..+|..++...-.. ++ +...++. . ..+++..+++++.++.+..||..+++++-............  ...++
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVA-T-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEE-T-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccc-e-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--eeccc
Confidence            567777777654433221 11 1222221 1 33356678888899999999999998765544321111110  11234


Q ss_pred             CeEEEecCCeEEEEecCCCcccccc-cCCc---ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee
Q psy13076        103 KNFLYTNGNSVIIRNIENPAISDIY-TEHS---CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF  171 (423)
Q Consensus       103 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~h~---~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  171 (423)
                      ..++...++.+..++.++++..... ....   ..........++..++.+..++.|..+|.++++.+.....
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            4555555668888888888877763 3221   1111222222377888888899999999999887766544

...

>KOG2695|consensus

Probab=98.22  E-value=5.4e-06  Score=71.82  Aligned_cols=124  Identities=15%  Similarity=0.261  Sum_probs=90.1

Q ss_pred             CCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc----eeeeeccccccCeEEEEECC-CCCEEEEEEecCeEEEEECC
Q psy13076        218 QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF----KFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGA  292 (423)
Q Consensus       218 ~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~----~~~~~~~~~~~~i~~l~~s~-~g~~l~s~s~dg~i~vwd~~  292 (423)
                      ..+.|....|...++. +..|..+|.|..+|.+..    ....+.--|...|+++..-. ++++|++.+-+|+|++||.+
T Consensus       251 sksDVfAlQf~~s~nL-v~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNL-VFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccCCe-eEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            4556777788877775 778889999999997543    11223335777888887666 77899999999999999987


Q ss_pred             Cccc---eecccccccCC--CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeee
Q psy13076        293 SADL---VSELGNPAHKG--GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       293 ~~~~---~~~~~~~~~~~--~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~  344 (423)
                      .-+.   +.+..  +|-.  .-.-+-.++.+..++++++|...|||.++++.++.+.
T Consensus       330 ~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  330 ATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            6555   44432  3321  1122334667788999999999999999999887665

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.21  E-value=0.0042  Score=58.52  Aligned_cols=78  Identities=22%  Similarity=0.305  Sum_probs=63.0

Q ss_pred             ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076        258 KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       258 ~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~  337 (423)
                      ....+..+.+++++|+...++.|..||.|.+||...+...  ..  ...-.++.++|||+|..+++|+.-|.+.+||+.-
T Consensus       255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--ee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            3456677899999999999999999999999997655322  21  1234467899999999999999999999999875


Q ss_pred             cc
Q psy13076        338 KS  339 (423)
Q Consensus       338 ~~  339 (423)
                      ..
T Consensus       331 sp  332 (545)
T PF11768_consen  331 SP  332 (545)
T ss_pred             Cc
Confidence            43

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.21  E-value=0.0062  Score=59.05  Aligned_cols=122  Identities=16%  Similarity=0.193  Sum_probs=69.9

Q ss_pred             EEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEE-----------------EEecCeEEEEECCCccce
Q psy13076        235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFAS-----------------AGFDGKVFLYDGASADLV  297 (423)
Q Consensus       235 ~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s-----------------~s~dg~i~vwd~~~~~~~  297 (423)
                      ++.++.+|.+..+|..+.+........   ...++.+| +..++.                 ...+|.+.-.|..+++.+
T Consensus       304 V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~  379 (488)
T cd00216         304 IVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV  379 (488)
T ss_pred             EEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe
Confidence            556677788888876665554433211   01123333 222221                 124577888888888876


Q ss_pred             ecccccccC------CCe--EEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc
Q psy13076        298 SELGNPAHK------GGV--YAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD  362 (423)
Q Consensus       298 ~~~~~~~~~------~~i--~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~  362 (423)
                      .+.....+.      ...  ..++.  .+..|+.++.|+.+..+|.++++.+-++..........+....+|.
T Consensus       380 W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~  450 (488)
T cd00216         380 WEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK  450 (488)
T ss_pred             eEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence            654322111      111  11222  4568888899999999999999988777665554444444344443

The alignment model contains an 8-bladed beta-propeller.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.17  E-value=0.0041  Score=54.74  Aligned_cols=234  Identities=15%  Similarity=0.125  Sum_probs=138.4

Q ss_pred             CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCc--ceeEEEEecCCCeeEEEE----eCCCeEEEEc
Q psy13076        175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK--PINSCDFKPSRPFRIITG----SEDNTIAVFE  248 (423)
Q Consensus       175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~s~----s~d~~i~~~~  248 (423)
                      +.....++.+|.....++.+--...+..+++..++.....+.....  -.-.-.|++++.++..|-    +..|.|-+||
T Consensus         4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            3455678888977777777666667777888888776655443221  122457999998766654    3467899999


Q ss_pred             CC-CceeeeeccccccCeEEEEECCCCCEEEEEEec-------C-----------eEEEEECCCccceecccc--cccCC
Q psy13076        249 GP-PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-------G-----------KVFLYDGASADLVSELGN--PAHKG  307 (423)
Q Consensus       249 ~~-~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-------g-----------~i~vwd~~~~~~~~~~~~--~~~~~  307 (423)
                      .. .+...-.+..+.-..-.+.+.|||+.|+.+.-.       |           .+-.-|..+|+++.+...  ..|..
T Consensus        84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence            87 555444444333223457789999877766321       1           334456777887766433  45778


Q ss_pred             CeEEEEECCCCCeEEEEeCCCc-------EEEEecCCcceeeeeeeCc------eeEeeEEEEEecCcEEEEEe-CCCcE
Q psy13076        308 GVYAVAWKPDGTQLLTASGDKT-------CKLWDIETKSAVSEFLMGN------QVEDQQVSCLWQGDYLLTVS-LSGFI  373 (423)
Q Consensus       308 ~i~~l~~~~~~~~l~s~s~d~~-------i~iwd~~~~~~i~~~~~~~------~~~~~~~~~~~~g~~l~~~~-~~~~i  373 (423)
                      .|..++++++|..++..=..+.       +-+++  .++.+..+....      ..-.-++.+..+|..+++.+ ..+.+
T Consensus       164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence            8999999999877665433332       22222  222122221111      11234566666777776555 56678


Q ss_pred             EEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCC
Q psy13076        374 SYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG  414 (423)
Q Consensus       374 ~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~  414 (423)
                      .+||..+.... ..  ..-..+-.++-.+++ +++|.|...
T Consensus       242 ~~~d~~tg~~~-~~--~~l~D~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  242 AVWDAATGRLL-GS--VPLPDACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             EEEECCCCCEe-ec--cccCceeeeeecCCc-eEEeCCCcc
Confidence            99998875431 11  112234455555555 677666543

>KOG1920|consensus

Probab=98.15  E-value=0.0034  Score=63.84  Aligned_cols=201  Identities=15%  Similarity=0.229  Sum_probs=126.6

Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec--CC
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE--TG  209 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~--~~  209 (423)
                      ..|.++.|..+..-++.+..+|.|.+-|.++......   ......|.+++|+||++.++.+...+........++  ..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv---g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV---GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeee---eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            5788999999988888888999999988766543322   223467899999999999988876443322111110  00


Q ss_pred             cce-------------------ecccC---------------------CCcceeEEEEecCCCeeEEEE----eCC-CeE
Q psy13076        210 TSV-------------------GEISG---------------------QSKPINSCDFKPSRPFRIITG----SED-NTI  244 (423)
Q Consensus       210 ~~~-------------------~~~~~---------------------~~~~i~~~~~~~~~~~~~~s~----s~d-~~i  244 (423)
                      +.+                   ..+.+                     ....-.++.|..++.+ +++.    -.+ +.|
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~-fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY-FAVSFVESETGTRKI  224 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE-EEEEEEeccCCceeE
Confidence            000                   00000                     0111234778888876 4442    223 789


Q ss_pred             EEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe---cCeEEEEECCCccce--ecccccccCCCeEEEEECCCCC
Q psy13076        245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF---DGKVFLYDGASADLV--SELGNPAHKGGVYAVAWKPDGT  319 (423)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~---dg~i~vwd~~~~~~~--~~~~~~~~~~~i~~l~~~~~~~  319 (423)
                      ++|+.. ..+..........-.+++|-|.|..+++...   |+.|.+|..+ |-..  ..+..+.....+..++|+.++.
T Consensus       225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSD  302 (1265)
T ss_pred             EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCC
Confidence            999865 4444333333334467999999999988654   4568888743 2211  1223334445589999999999


Q ss_pred             eEEE---EeCCCcEEEEecCCc
Q psy13076        320 QLLT---ASGDKTCKLWDIETK  338 (423)
Q Consensus       320 ~l~s---~s~d~~i~iwd~~~~  338 (423)
                      .|+.   ......|++|-+.+.
T Consensus       303 iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  303 ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ceeeeecccccceEEEEEecCe
Confidence            9988   555556999987764

>KOG1832|consensus

Probab=98.02  E-value=8.7e-06  Score=78.93  Aligned_cols=220  Identities=14%  Similarity=0.153  Sum_probs=135.4

Q ss_pred             CCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecC---CeE
Q psy13076         37 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG---NSV  113 (423)
Q Consensus        37 ~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  113 (423)
                      .++..+|+.|+..-+|++|+.+.++|+.|+..|.|+++|+.+|.......++ ......+..+.+|...+.++.   -..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCcceeeeeccccCchH
Confidence            4456788999999999999999999999999999999999998766554432 223334455566766555432   245


Q ss_pred             EEEecCC-CcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee--cCCCCCeeEEEECCCCCeE
Q psy13076        114 IIRNIEN-PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF--HPIGGPIKDIAWSPDNQRM  190 (423)
Q Consensus       114 ~i~~~~~-~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~~~  190 (423)
                      .+|+... +...+.|.    .-.++.|+..-+.-+.|.......+||+.+...+.....  ......-+.+.|+|+...+
T Consensus      1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             HHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            6787753 22233333    345778887644444455556789999988765432110  1111223678899998866


Q ss_pred             EEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEE
Q psy13076        191 VVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRY  270 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~  270 (423)
                      +=-       +.+|+......++.+..-+ .--.-.|+|.+...++ -     -.+||.+++++..+.....  -..+.|
T Consensus      1246 lnd-------GvLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVII-N-----SEIwD~RTF~lLh~VP~Ld--qc~VtF 1309 (1516)
T KOG1832|consen 1246 LND-------GVLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVII-N-----SEIWDMRTFKLLHSVPSLD--QCAVTF 1309 (1516)
T ss_pred             eeC-------ceeeeeccHHHHhhhhhhe-ecccccccCCCceEEe-e-----chhhhhHHHHHHhcCcccc--ceEEEe
Confidence            521       3467665554444433222 2223357888876443 2     2479988887655443322  145677


Q ss_pred             CCCCCEE
Q psy13076        271 SPSGSHF  277 (423)
Q Consensus       271 s~~g~~l  277 (423)
                      +..|..+
T Consensus      1310 NstG~Vm 1316 (1516)
T KOG1832|consen 1310 NSTGDVM 1316 (1516)
T ss_pred             ccCccch
Confidence            7777644

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.02  E-value=0.0019  Score=60.97  Aligned_cols=215  Identities=15%  Similarity=0.242  Sum_probs=109.1

Q ss_pred             CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK  255 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~  255 (423)
                      .....+.++|+|+++++++++.-   .++.   ....+.  .....-....|.+.+.  +|+-...+.|.++..-.....
T Consensus        33 ~~p~~ls~npngr~v~V~g~geY---~iyt---~~~~r~--k~~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVCGDGEY---EIYT---ALAWRN--KAFGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             S--SEEEE-TTSSEEEEEETTEE---EEEE---TTTTEE--EEEEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-TT
T ss_pred             cCCeeEEECCCCCEEEEEcCCEE---EEEE---ccCCcc--cccCceeEEEEecCcc--EEEEECCCeEEEEEcCccccc
Confidence            44689999999999999765531   1111   111111  1112344567777554  555556788888732111110


Q ss_pred             eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076        256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       256 ~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~  335 (423)
                      ..... +..+..+-.   |.+|+..+. +.|.+||..+++.+.++..    ..|..+.|+++|++++-.+.+ ++.|++.
T Consensus       103 k~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v----~~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  103 KSIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV----SAVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             ------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             eEEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec----CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            01111 111333322   777776654 4899999999998888742    237899999999999988765 5777765


Q ss_pred             CCc--------------ceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEec
Q psy13076        336 ETK--------------SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALS  401 (423)
Q Consensus       336 ~~~--------------~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~s  401 (423)
                      ...              ..+.+      .....-+..|.++.++..+.+ .++++  ..+  ....+..-..++.=+...
T Consensus       173 ~~~~~~~~~~~g~e~~f~~~~E------~~~~IkSg~W~~d~fiYtT~~-~lkYl--~~G--e~~~i~~ld~~~yllgy~  241 (443)
T PF04053_consen  173 NLEAVAAIPEEGVEDAFELIHE------ISERIKSGCWVEDCFIYTTSN-HLKYL--VNG--ETGIIAHLDKPLYLLGYL  241 (443)
T ss_dssp             -HHHHHHBTTTB-GGGEEEEEE------E-S--SEEEEETTEEEEE-TT-EEEEE--ETT--EEEEEEE-SS--EEEEEE
T ss_pred             cchhcccccccCchhceEEEEE------ecceeEEEEEEcCEEEEEcCC-eEEEE--EcC--CcceEEEcCCceEEEEEE
Confidence            433              11221      122233556778866665555 77663  222  123344445667777778


Q ss_pred             CCCCeEEEecCCCcEEEeeC
Q psy13076        402 PDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       402 p~~~~l~s~s~D~~i~~W~~  421 (423)
                      |..+.+.....|+.|..+.+
T Consensus       242 ~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  242 PKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             TTTTEEEEE-TT--EEEEE-
T ss_pred             ccCCEEEEEECCCCEEEEEE
Confidence            87778888888888877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617|consensus

Probab=98.01  E-value=0.00019  Score=69.73  Aligned_cols=112  Identities=20%  Similarity=0.269  Sum_probs=78.9

Q ss_pred             eEEEECCCCCeEEEEEcCCceeeEEE-eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee
Q psy13076        179 KDIAWSPDNQRMVVVGEGRERFGHVF-MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT  257 (423)
Q Consensus       179 ~~v~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~  257 (423)
                      +-..|+|..+.++++.-+...-+.+- ..++|.+.+.+.. .-.+++++|+|.. +.++.|=.-|.+.+|...+.+....
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~-P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTY-PVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccc-ceehhhhccChHH-HHHhhccccceeEEEecCCceeeee
Confidence            34678998888888765544333332 2344554333321 1134568899875 4467776778899998766555555


Q ss_pred             ccccccCeEEEEECCCCCEEEEEEecCeEEEEECC
Q psy13076        258 KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA  292 (423)
Q Consensus       258 ~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~  292 (423)
                      ...|+.+|..+.|||+|..++++..-|.+.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            67788999999999999999999999999999765

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.01  E-value=0.00061  Score=64.01  Aligned_cols=198  Identities=16%  Similarity=0.185  Sum_probs=117.1

Q ss_pred             CcccccccCCcceEEEEEECCCCCEEEEEc---cC-CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076        121 PAISDIYTEHSCAVNVAKYSPSGFYIASGD---IS-GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~---~d-~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                      +.....+..-...+..-+|+|+++.++-..   .. ..+.++++.+++......+.   +.-..-+|+|||+.++.+...
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fspDG~~l~f~~~r  258 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSPDGSKLAFSSSR  258 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCCCCCEEEEEECC
Confidence            333444444445666778999988765442   22 45888888876544333332   233456899999999998776


Q ss_pred             CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE--cCCCcee-eeeccccccCeEEEEECCC
Q psy13076        197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF--EGPPFKF-KMTKQEHSRFVQAVRYSPS  273 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~--~~~~~~~-~~~~~~~~~~i~~l~~s~~  273 (423)
                      ++..........+..+..+......-..-.|+|++..+..+.+..|.-.+|  +...... ..+......  ....|+||
T Consensus       259 dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~Spd  336 (425)
T COG0823         259 DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSPD  336 (425)
T ss_pred             CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCCC
Confidence            654433333333333444443333344678999999988888887765555  4333222 222222222  25679999


Q ss_pred             CCEEEEEEe-cCe--EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC
Q psy13076        274 GSHFASAGF-DGK--VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG  326 (423)
Q Consensus       274 g~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~  326 (423)
                      |++++..+. +|.  |.+.|..++.....+.   +......-+|.|+|+.+...+.
T Consensus       337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         337 GDKIVFESSSGGQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CCEEEEEeccCCceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEecc
Confidence            999887775 354  6666665555433332   2333446678888887766544

>smart00320 WD40 WD40 repeats

Probab=98.01  E-value=1.1e-05  Score=47.15  Aligned_cols=38  Identities=37%  Similarity=0.733  Sum_probs=34.3

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEee
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN   75 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~   75 (423)
                      .+...+.+|.+.|.++.|.+++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3621|consensus

Probab=97.95  E-value=0.0059  Score=58.60  Aligned_cols=116  Identities=20%  Similarity=0.309  Sum_probs=86.2

Q ss_pred             EEEE-eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076         11 SCLW-QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        11 ~~~~-~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      +|.. -++||+-|+..|.+.++.-+.+.-..+...|-.+.+..+..+++..++|.|+..|.|-++-++.+ .    +   
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~----p---  110 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-L----P---  110 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-C----C---
Confidence            4443 69999999999999999887655455555566667778899999999999999888877765531 0    0   


Q ss_pred             CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076         90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~  162 (423)
                                 .-+.++..                 .-..|...|++++|++++..+.+|+..|+|.+-.+..
T Consensus       111 -----------~~~~~~t~-----------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  111 -----------RDLDYVTP-----------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             -----------Ccceeecc-----------------ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                       00001100                 1123889999999999999999999999999887765

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.93  E-value=3.6e-05  Score=71.90  Aligned_cols=74  Identities=16%  Similarity=0.298  Sum_probs=60.0

Q ss_pred             cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccc
Q psy13076         45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS  124 (423)
Q Consensus        45 gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  124 (423)
                      .....|.|++++|+.+.|+.|+.||+|.+||...+-..                                          
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~------------------------------------------  294 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL------------------------------------------  294 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee------------------------------------------
Confidence            36789999999999999999999999999998654111                                          


Q ss_pred             ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076        125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus       125 ~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~  162 (423)
                        +..+.-..+.++|+|+|.++++|+..|.+++||+.-
T Consensus       295 --~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  295 --LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             --eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence              011122457889999999999999999999999753

>smart00320 WD40 WD40 repeats

Probab=97.92  E-value=2.7e-05  Score=45.39  Aligned_cols=36  Identities=39%  Similarity=0.796  Sum_probs=32.6

Q ss_pred             eEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        385 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       385 ~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      ...+..|...|+++.|+|+++++++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455678899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1832|consensus

Probab=97.90  E-value=1e-05  Score=78.50  Aligned_cols=193  Identities=16%  Similarity=0.173  Sum_probs=125.8

Q ss_pred             eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCe--EEEE
Q psy13076        212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK--VFLY  289 (423)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~--i~vw  289 (423)
                      +..+..+....++++|+...++ ++.|+..|.|++|+............|..+++-+.=+.+|.+.++.+.-..  ..+|
T Consensus      1094 w~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             chhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            3445566778899999987765 889999999999997766666677889999999998999997766554333  5689


Q ss_pred             ECCCc-cceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC---ceeEeeEEEEEecCcEEE
Q psy13076        290 DGASA-DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG---NQVEDQQVSCLWQGDYLL  365 (423)
Q Consensus       290 d~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~---~~~~~~~~~~~~~g~~l~  365 (423)
                      +..+. .....+      ..-.++.|+..-++-+.|..-..+.+||++++..+.++...   .+.......++|.++.++
T Consensus      1173 ~~~s~~~~~Hsf------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSF------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             ccccccCccccc------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            87652 222222      33467889876555555555567999999998776654321   122223333444443333


Q ss_pred             EEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        366 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       366 ~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      -   |  -.+||.+.+ ..++++...+.-+ .=.|+|.|.-++--+     .|||+.|
T Consensus      1247 n---d--GvLWDvR~~-~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1247 N---D--GVLWDVRIP-EAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred             e---C--ceeeeeccH-HHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHH
Confidence            1   1  247888876 4455554433111 235889988887666     5787654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.86  E-value=0.018  Score=51.42  Aligned_cols=268  Identities=17%  Similarity=0.160  Sum_probs=148.1

Q ss_pred             eEEEEecCCCccccccc-CCcceEEEEEECCCCCEEEEEcc----------CCcEEEEEcCCCceeEEeeecCC-----C
Q psy13076        112 SVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDI----------SGKVRIWDTVNKEHILKNEFHPI-----G  175 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~-~h~~~i~~~~~sp~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~~~~-----~  175 (423)
                      .+.+.|.++++++-+.. +...   .+..+|+++.++++..          ...|.+||..+........++..     .
T Consensus        18 rv~viD~d~~k~lGmi~~g~~~---~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMIDTGFLG---NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEESSE---EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             eEEEEECCCCcEEEEeecccCC---ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            34555555555544333 2222   2457899999887642          45699999988766554444431     1


Q ss_pred             CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC-Ccee
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-PFKF  254 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~-~~~~  254 (423)
                      .....++++.|++++++..........+.+.+..+-+.++....    |.-.-|.++..+.+-+.||.+...... ..+.
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence            22345789999999999887777777777777666665554322    333334444457777788887765422 1111


Q ss_pred             ee----eccccccC-eEEEEECCCCCEEEEEEecCeEEEEECCCccce--ecccc--cc------cCCCeEEEEECCCCC
Q psy13076        255 KM----TKQEHSRF-VQAVRYSPSGSHFASAGFDGKVFLYDGASADLV--SELGN--PA------HKGGVYAVAWKPDGT  319 (423)
Q Consensus       255 ~~----~~~~~~~~-i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~--~~~~~--~~------~~~~i~~l~~~~~~~  319 (423)
                      ..    .+....++ ...-++...+..++--+++|.|+--|+......  ..+..  .+      -.++-.-+++++..+
T Consensus       171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~  250 (342)
T PF06433_consen  171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG  250 (342)
T ss_dssp             EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred             eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence            11    11111122 223344455555555789999988887654321  11110  00      012234578887665


Q ss_pred             eEEEEe---CCC-------cEEEEecCCcceeeeeeeCceeEeeEEEEEecCc-EEEEEe-CCCcEEEEecCCCCCceEE
Q psy13076        320 QLLTAS---GDK-------TCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD-YLLTVS-LSGFISYLDVNNPSTPIRV  387 (423)
Q Consensus       320 ~l~s~s---~d~-------~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~-~l~~~~-~~~~i~~~~~~~~~~~~~~  387 (423)
                      .|..--   .++       .|=++|+++++.+..+....+  ..++.+..+.+ .|.+.+ .++.+.++|..+++ .++.
T Consensus       251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~--~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk-~~~~  327 (342)
T PF06433_consen  251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP--IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK-LVRS  327 (342)
T ss_dssp             EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE--ESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEE
T ss_pred             eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc--cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc-EEee
Confidence            554422   222       366779999999888765443  23455555555 444444 46889999999864 3444


Q ss_pred             ec
Q psy13076        388 IK  389 (423)
Q Consensus       388 ~~  389 (423)
                      +.
T Consensus       328 ~~  329 (342)
T PF06433_consen  328 IE  329 (342)
T ss_dssp             E-
T ss_pred             hh
Confidence            43

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114|consensus

Probab=97.85  E-value=0.0026  Score=62.26  Aligned_cols=186  Identities=11%  Similarity=0.182  Sum_probs=115.6

Q ss_pred             eEEEEeCCCeEEEEcCCCceeeeeccccccC-eEEEEECCCCCEEEEEEecCe-----EEEEECCCcc------ce----
Q psy13076        234 RIITGSEDNTIAVFEGPPFKFKMTKQEHSRF-VQAVRYSPSGSHFASAGFDGK-----VFLYDGASAD------LV----  297 (423)
Q Consensus       234 ~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~-i~~l~~s~~g~~l~s~s~dg~-----i~vwd~~~~~------~~----  297 (423)
                      .++.|+.+|.|.+++. .++.....+.++.. ++.+....+-.+|++.+.|+.     +++|++...+      +.    
T Consensus        37 ~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~r  115 (933)
T KOG2114|consen   37 SVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHR  115 (933)
T ss_pred             eEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeee
Confidence            5888999999999873 34443444555544 555544444468888777654     8899976431      12    


Q ss_pred             -ecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC--Cccee-eeeeeCceeEeeEEEEEecCcEEEEEeCCCcE
Q psy13076        298 -SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE--TKSAV-SEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFI  373 (423)
Q Consensus       298 -~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~--~~~~i-~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i  373 (423)
                       .++.++.....+..++.+.+-+.+|.|-.+|.|.++.-.  .-... ..+..............-++..++.+.....|
T Consensus       116 i~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V  195 (933)
T KOG2114|consen  116 IFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQV  195 (933)
T ss_pred             eeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEeccee
Confidence             111222234567889999999999999999999988421  11111 11111111122223333366666667777888


Q ss_pred             EEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        374 SYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       374 ~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      ..|.+.......+.+..|..+++|-+|++....++.++. ..+.+|+.
T Consensus       196 ~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~s  242 (933)
T KOG2114|consen  196 MLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDS  242 (933)
T ss_pred             EEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcC
Confidence            888887544234457888889999999987775555553 35777764

>KOG2066|consensus

Probab=97.72  E-value=0.00066  Score=65.73  Aligned_cols=144  Identities=13%  Similarity=0.218  Sum_probs=95.6

Q ss_pred             cCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceee
Q psy13076        263 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVS  342 (423)
Q Consensus       263 ~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~  342 (423)
                      ..+++++++  +++|+-|+.+|.|++.+..- .....+   .|...      ..+|.+++|||.||+|.|-.+-+.+...
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~~~~~---~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG-NPKTNF---DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCC-cccccc---ccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            345666665  47899999999999988532 221111   13322      6689999999999999999888777666


Q ss_pred             eeeeCceeEeeEEEEEe---cCcEEEEEeCCCcEEEEecCCCCCceE-EeccCCCceeEEEecCCCCeEEEecCCCcEEE
Q psy13076        343 EFLMGNQVEDQQVSCLW---QGDYLLTVSLSGFISYLDVNNPSTPIR-VIKGHNKPITALALSPDRGTVFTGSHDGFITR  418 (423)
Q Consensus       343 ~~~~~~~~~~~~~~~~~---~g~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~  418 (423)
                      ++....+.+...+...+   ..+.+++|+..| +.++.-+..+.... .+..-.++|.+|.|.  |.+||=++++| |++
T Consensus       108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v  183 (846)
T KOG2066|consen  108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV  183 (846)
T ss_pred             eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence            55444444433332221   355678888888 66664433222211 244556799999998  77898888776 788


Q ss_pred             eeCC
Q psy13076        419 WNAK  422 (423)
Q Consensus       419 W~~~  422 (423)
                      +|..
T Consensus       184 yd~~  187 (846)
T KOG2066|consen  184 YDTP  187 (846)
T ss_pred             Eecc
Confidence            8865

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.65  E-value=0.068  Score=51.90  Aligned_cols=273  Identities=15%  Similarity=0.155  Sum_probs=135.9

Q ss_pred             CeEEEecCCeEEEEecCCCcccccccCCcc------eEE--EEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCC
Q psy13076        103 KNFLYTNGNSVIIRNIENPAISDIYTEHSC------AVN--VAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI  174 (423)
Q Consensus       103 ~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~------~i~--~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  174 (423)
                      ..++......+...+.++++....+.....      .+.  .+.+. ++..++.++.++.|.-.|.++++.++.......
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~  141 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ  141 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence            334444445566666666666554432221      000  01111 225777788899999999999988776554321


Q ss_pred             CCCeeEEEECC--CCCeEEEEEcC-------CceeeEEEeecCCcceecccCCCc--------------------ce-eE
Q psy13076        175 GGPIKDIAWSP--DNQRMVVVGEG-------RERFGHVFMSETGTSVGEISGQSK--------------------PI-NS  224 (423)
Q Consensus       175 ~~~v~~v~~s~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------------------~i-~~  224 (423)
                      ...-..+.-+|  .+..+++.+..       .......++.++++.+........                    .+ ..
T Consensus       142 ~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~  221 (488)
T cd00216         142 VPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS  221 (488)
T ss_pred             cCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCC
Confidence            00000011111  11223322211       112233445555655443322100                    00 11


Q ss_pred             EEEecCCCeeEEEEeCCC------------------eEEEEcCCCceeeeeccccccCe------EEEEEC----CCCC-
Q psy13076        225 CDFKPSRPFRIITGSEDN------------------TIAVFEGPPFKFKMTKQEHSRFV------QAVRYS----PSGS-  275 (423)
Q Consensus       225 ~~~~~~~~~~~~s~s~d~------------------~i~~~~~~~~~~~~~~~~~~~~i------~~l~~s----~~g~-  275 (423)
                      ..+.+.+.. ++.++.++                  .+.-+|..+.+.....+......      ....+.    -+|. 
T Consensus       222 pa~d~~~g~-V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         222 PTYDPKTNL-VYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             eeEeCCCCE-EEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            233333333 44454443                  67777777666665543211100      000111    1343 


Q ss_pred             --EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEE-----------------EeCCCcEEEEecC
Q psy13076        276 --HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT-----------------ASGDKTCKLWDIE  336 (423)
Q Consensus       276 --~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s-----------------~s~d~~i~iwd~~  336 (423)
                        .++.++.+|.+...|.++|+.+.+....     ...++.+| +...+.                 ...++.+.-.|..
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~  374 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK  374 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence              5778889999999999999987654321     11233444 222221                 1235678888888


Q ss_pred             CcceeeeeeeCcee-------EeeEEEEEecCcEEEEEeCCCcEEEEecCCCCC
Q psy13076        337 TKSAVSEFLMGNQV-------EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPST  383 (423)
Q Consensus       337 ~~~~i~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~  383 (423)
                      +++.+=+.......       ....-.....+..|..++.+|.++.+|..+++.
T Consensus       375 tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~  428 (488)
T cd00216         375 TGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKE  428 (488)
T ss_pred             CCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCce
Confidence            88766544332100       000011123677888889999999999988654

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.63  E-value=0.037  Score=49.55  Aligned_cols=265  Identities=14%  Similarity=0.195  Sum_probs=120.7

Q ss_pred             eeEEEEeCCEEEEE----------eccceEEEEeccCCCCcee--eccc-ccC----ceeEEEEeCCCCeEEEe--cCCC
Q psy13076          9 QVSCLWQGDYLLTV----------SLSGFISYLDVNNPSTPIR--VIKG-HNK----PITALALSPDRGTVFTG--SHDG   69 (423)
Q Consensus         9 ~~~~~~~~~~~~~~----------~~dg~i~~~d~~~~~~~~~--~~~g-h~~----~V~~l~~~~~~~~l~sg--~~D~   69 (423)
                      ++++++||+.+.++          -++..|.+||..+ -.+..  .+.+ |+-    ....++++.++++++..  +=-.
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            36677889988874          3567899999764 22221  1221 221    22345777888776553  3455


Q ss_pred             ceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccc----cccCCcceE-EEEEECCCCC
Q psy13076         70 FITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD----IYTEHSCAV-NVAKYSPSGF  144 (423)
Q Consensus        70 ~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~h~~~i-~~~~~sp~~~  144 (423)
                      +|.|-|++.++...+++.  .++..+.-..+++-..+|.+|.-..+---+.++...    .|..-..++ ..-.+...+.
T Consensus       119 SVtVVDl~~~kvv~ei~~--PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~  196 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDT--PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG  196 (342)
T ss_dssp             EEEEEETTTTEEEEEEEG--TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred             eEEEEECCCCceeeeecC--CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence            688888888887766532  333333333333322233333333332222343321    111111111 1112223333


Q ss_pred             EEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeE
Q psy13076        145 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINS  224 (423)
Q Consensus       145 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  224 (423)
                      .++--+..|.|.--|+............-....-..-.|.|.|-.++..-.....+ .+.+.. +.    --.|..+   
T Consensus       197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl-yvLMh~-g~----~gsHKdp---  267 (342)
T PF06433_consen  197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL-YVLMHQ-GG----EGSHKDP---  267 (342)
T ss_dssp             EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE-EEEEEE-------TT-TTS----
T ss_pred             eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE-EEEecC-CC----CCCccCC---
Confidence            44445666666666655443222111110000000113555555544443222111 011110 00    0011110   


Q ss_pred             EEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC-EEEEEE-ecCeEEEEECCCccceecccc
Q psy13076        225 CDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS-HFASAG-FDGKVFLYDGASADLVSELGN  302 (423)
Q Consensus       225 ~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~s-~dg~i~vwd~~~~~~~~~~~~  302 (423)
                                      ...|.++|....+....... ...+.+++++.+.+ +|.+.+ .++.+.+||..+++.+.++..
T Consensus       268 ----------------gteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  268 ----------------GTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ----------------EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ----------------ceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence                            11466777776665444332 23467899999877 555544 478999999999998877643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.62  E-value=0.063  Score=50.71  Aligned_cols=184  Identities=15%  Similarity=0.129  Sum_probs=94.1

Q ss_pred             CcccceeeEEEEeCCEEEEEecc-----------ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCce
Q psy13076          3 NQVEDQQVSCLWQGDYLLTVSLS-----------GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI   71 (423)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~d-----------g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i   71 (423)
                      ..++++.||+.+-|+.||..-.+           ..|++++..  ++++..+.=-.+.|.++.|..+.. |+.-..||++
T Consensus        27 ~~l~~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s--G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v  103 (410)
T PF04841_consen   27 DDLSDYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS--GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTV  103 (410)
T ss_pred             ccccceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC--CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEE
Confidence            34677889998888888876444           157777754  344444321127899999988655 4455689999


Q ss_pred             EEeecCCcceeecccCCCCCC---ce---EEeeCCCCCeEEEecCCeEEEEecCCCccccc----------ccCCcceEE
Q psy13076         72 TRWNAKTEYIFATLPRTQRGQ---PI---VLGGDPKGKNFLYTNGNSVIIRNIENPAISDI----------YTEHSCAVN  135 (423)
Q Consensus        72 ~vW~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------~~~h~~~i~  135 (423)
                      +++|+.... ...+.......   .+   ...+...|-.++..+.+...+-+.+.+.....          +..+.....
T Consensus       104 ~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~  182 (410)
T PF04841_consen  104 RVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTV  182 (410)
T ss_pred             EEEeCCCce-eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccccccc
Confidence            999986433 11111110000   00   01111234333333333333444433311110          001111100


Q ss_pred             EEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076        136 VAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       136 ~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                      ...++.+....+....++.+.+-+....+.      ....+++..++.||++++++.....
T Consensus       183 i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------i~~~~~i~~iavSpng~~iAl~t~~  237 (410)
T PF04841_consen  183 IPLLSSDRVVEILLANGETIYIIDENSFKQ------IDSDGPIIKIAVSPNGKFIALFTDS  237 (410)
T ss_pred             ceEeecCcceEEEEecCCEEEEEEcccccc------ccCCCCeEEEEECCCCCEEEEEECC
Confidence            123444555555544555555333211111      1123679999999999999887654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1645|consensus

Probab=97.57  E-value=0.00026  Score=62.91  Aligned_cols=97  Identities=24%  Similarity=0.328  Sum_probs=74.1

Q ss_pred             EEEEECCCccceecccccccCCCeEEEEECCCCC-eEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEe---cC
Q psy13076        286 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QG  361 (423)
Q Consensus       286 i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~---~g  361 (423)
                      +++.+..+.+...-+  +.+...|.+++|+|..+ +|..++.+.+|+|.|+++..++..+....+    .++|.|   +.
T Consensus       175 v~~l~~~~fkssq~l--p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~----~wSC~wDlde~  248 (463)
T KOG1645|consen  175 VQKLESHDFKSSQIL--PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQ----IWSCCWDLDER  248 (463)
T ss_pred             eEEeccCCcchhhcc--cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCC----ceeeeeccCCc
Confidence            666665555544322  45677899999999877 788899999999999999998888876543    466766   35


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCceEEe
Q psy13076        362 DYLLTVSLSGFISYLDVNNPSTPIRVI  388 (423)
Q Consensus       362 ~~l~~~~~~~~i~~~~~~~~~~~~~~~  388 (423)
                      .++.+|...|.|++||.+.++.++..+
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~~~~~e~  275 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPEGPLMEL  275 (463)
T ss_pred             ceeEEeccCceEEEEEccCCCchHhhh
Confidence            677888999999999999877655443

>KOG1897|consensus

Probab=97.56  E-value=0.12  Score=52.15  Aligned_cols=392  Identities=11%  Similarity=0.132  Sum_probs=190.2

Q ss_pred             EEEeCCEEEEEeccceEEEEeccCCCCceeecc--cccCceeEEEEeCC--C----CeEEEecCCCceEEeecC-Cccee
Q psy13076         12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK--GHNKPITALALSPD--R----GTVFTGSHDGFITRWNAK-TEYIF   82 (423)
Q Consensus        12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~--gh~~~V~~l~~~~~--~----~~l~sg~~D~~i~vW~~~-~~~~~   82 (423)
                      |..+...++.|+.++.+.+.++....  ++...  .-..+|.|+.++|.  +    ++++.|.++..+.+--.- .....
T Consensus       495 ~~~n~sqVvvA~~~~~l~y~~i~~~~--l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~  572 (1096)
T KOG1897|consen  495 VSANASQVVVAGGGLALFYLEIEDGG--LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILI  572 (1096)
T ss_pred             EeecceEEEEecCccEEEEEEeeccc--eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCccee
Confidence            33456677778888888888876543  21111  12568999999974  2    368888887776654322 21111


Q ss_pred             -ec-ccCCCCCCceEE-eeCCCCCeEEEecCCe-EE--EEecCCCcccccccCC--cceEEEEEECCCCC-EEEEEccCC
Q psy13076         83 -AT-LPRTQRGQPIVL-GGDPKGKNFLYTNGNS-VI--IRNIENPAISDIYTEH--SCAVNVAKYSPSGF-YIASGDISG  153 (423)
Q Consensus        83 -~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~--i~~~~~~~~~~~~~~h--~~~i~~~~~sp~~~-~l~s~~~d~  153 (423)
                       +. +....--+.+.+ ..-.+...++++.++. +.  +.+..++.....-+.|  +.++.--.|+..++ ++.+++ |+
T Consensus       573 ~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-dr  651 (1096)
T KOG1897|consen  573 THEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DR  651 (1096)
T ss_pred             eeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CC
Confidence             11 111111112222 2222344555554442 22  3445555444333222  34566667776444 444444 44


Q ss_pred             cEEEEEcCCCceeEEeeecCCCCCeeE-EEECCC--CCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecC
Q psy13076        154 KVRIWDTVNKEHILKNEFHPIGGPIKD-IAWSPD--NQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS  230 (423)
Q Consensus       154 ~i~vwd~~~~~~~~~~~~~~~~~~v~~-v~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  230 (423)
                      =..+|.... +........   ..+.. ..|+.+  ...++.+..+.-.++.+-.. ....++++..+ .+...+++.+.
T Consensus       652 P~viY~~n~-kLv~spls~---kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~i-qkl~irtvpl~-~~prrI~~q~~  725 (1096)
T KOG1897|consen  652 PTVIYSSNG-KLVYSPLSL---KEVNHMCPFNSDAYPDSLASANGGALTIGTIDEI-QKLHIRTVPLG-ESPRRICYQES  725 (1096)
T ss_pred             CEEEEecCC-cEEEeccch---HHhhhhcccccccCCceEEEecCCceEEEEecch-hhcceeeecCC-CChhheEeccc
Confidence            444555432 222211100   01111 123322  23344443332222222111 11112222211 12223334432


Q ss_pred             CCeeEEEEeC-----------C---CeEEEEcCCCceeeeecc--cc--ccCeEEEEECCC-CCEEEEEEe---------
Q psy13076        231 RPFRIITGSE-----------D---NTIAVFEGPPFKFKMTKQ--EH--SRFVQAVRYSPS-GSHFASAGF---------  282 (423)
Q Consensus       231 ~~~~~~s~s~-----------d---~~i~~~~~~~~~~~~~~~--~~--~~~i~~l~~s~~-g~~l~s~s~---------  282 (423)
                      ... +.+.+.           .   ..++++|.+++......+  ..  ...+.++.|..| +.+++.|+.         
T Consensus       726 sl~-~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep  804 (1096)
T KOG1897|consen  726 SLT-FGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEP  804 (1096)
T ss_pred             ceE-EEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCc
Confidence            111 111111           1   135667766555332211  11  123455568777 778887763         


Q ss_pred             -cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecC
Q psy13076        283 -DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQG  361 (423)
Q Consensus       283 -dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g  361 (423)
                       .|.|.+|.....+.++......-.+.+.++.. -+|++||.  -...|++|++.+.+.++.-. +.......+.....|
T Consensus       805 ~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~-~~~~~~~aL~l~v~g  880 (1096)
T KOG1897|consen  805 VNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIEC-NISNPIIALDLQVKG  880 (1096)
T ss_pred             ccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhh-cccCCeEEEEEEecC
Confidence             26677777666443433322223455555543 26776654  46789999998874433211 111122334445689


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCceEEe--ccCCCceeEEEecCCCCeEEEecCCCcEEE
Q psy13076        362 DYLLTVSLSGFISYLDVNNPSTPIRVI--KGHNKPITALALSPDRGTVFTGSHDGFITR  418 (423)
Q Consensus       362 ~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~  418 (423)
                      ++++.|+..+.+.+.-....+..+...  .-|..+++++.+-.+..++.+ -.+|.+.+
T Consensus       881 deI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylga-e~~gNlf~  938 (1096)
T KOG1897|consen  881 DEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGA-ENSGNLFT  938 (1096)
T ss_pred             cEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEee-cccccEEE
Confidence            999999999988776655544323222  357788999999877766643 33454443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.56  E-value=0.013  Score=53.54  Aligned_cols=143  Identities=15%  Similarity=0.195  Sum_probs=89.3

Q ss_pred             CCEEEEEEe----------cCeEEEEECCCc----cceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076        274 GSHFASAGF----------DGKVFLYDGASA----DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       274 g~~l~s~s~----------dg~i~vwd~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      ..+++.|+.          .|.|.+++....    ..+..+......+.|.+++-- ++. |+.+. .++|.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            357777764          288999998874    223333223457888888754 444 55444 4789999998877


Q ss_pred             -eeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEec--cCCCceeEEEecCCCCeEEEecCCCcE
Q psy13076        340 -AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK--GHNKPITALALSPDRGTVFTGSHDGFI  416 (423)
Q Consensus       340 -~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~h~~~v~~i~~sp~~~~l~s~s~D~~i  416 (423)
                       ....-....+...  .+....+++++.|+....+.++........+..+.  .....++++.|-+++..++.+..+|.+
T Consensus       119 ~l~~~~~~~~~~~i--~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  119 TLLKKAFYDSPFYI--TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             SEEEEEEE-BSSSE--EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             cchhhheecceEEE--EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence             5544333333222  23334578999999888887775544333222222  235569999998777788899999999


Q ss_pred             EEeeC
Q psy13076        417 TRWNA  421 (423)
Q Consensus       417 ~~W~~  421 (423)
                      .++..
T Consensus       197 ~~l~~  201 (321)
T PF03178_consen  197 FVLRY  201 (321)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88754

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1008|consensus

Probab=97.53  E-value=2.6e-05  Score=73.19  Aligned_cols=187  Identities=18%  Similarity=0.176  Sum_probs=112.8

Q ss_pred             eeEEEEeCCCeEEEEcCCCcee--eeeccccccCeEEEEECCCC-CEEEEEEe----cCeEEEEECCCc--cceeccccc
Q psy13076        233 FRIITGSEDNTIAVFEGPPFKF--KMTKQEHSRFVQAVRYSPSG-SHFASAGF----DGKVFLYDGASA--DLVSELGNP  303 (423)
Q Consensus       233 ~~~~s~s~d~~i~~~~~~~~~~--~~~~~~~~~~i~~l~~s~~g-~~l~s~s~----dg~i~vwd~~~~--~~~~~~~~~  303 (423)
                      .+++.|..+|.|.+-..+....  ......+..+.++++|++-. ..||+|-.    |..+.|||..++  .........
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs  150 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS  150 (783)
T ss_pred             hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence            3577888889888875432221  12233456678899999854 34555422    346899998765  111111111


Q ss_pred             -ccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEe-cCcEEEEEeCCCcEEEEe-cCC
Q psy13076        304 -AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW-QGDYLLTVSLSGFISYLD-VNN  380 (423)
Q Consensus       304 -~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~i~~~~-~~~  380 (423)
                       .-..+..+++|..+.+++.+|...+.+.++|++....-.......  ..+.+++.| .+.++++-. +|.+-+|| ..+
T Consensus       151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk--~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn  227 (783)
T KOG1008|consen  151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTK--YVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN  227 (783)
T ss_pred             cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhh--hcccceecCCCCCceeccc-cCceeeccchhh
Confidence             122345588899899999999999999999998432111111111  112234444 667766555 99999999 555


Q ss_pred             CCCceEEeccCC----CceeEEEecCCCC-eEEEecCC-CcEEEeeCC
Q psy13076        381 PSTPIRVIKGHN----KPITALALSPDRG-TVFTGSHD-GFITRWNAK  422 (423)
Q Consensus       381 ~~~~~~~~~~h~----~~v~~i~~sp~~~-~l~s~s~D-~~i~~W~~~  422 (423)
                      -+.++..+...+    +.+..++|+|-.. .+++...| ++|+++++.
T Consensus       228 ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  228 IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            444443332222    2499999999654 45555554 788888864

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.50  E-value=0.035  Score=48.11  Aligned_cols=195  Identities=14%  Similarity=0.155  Sum_probs=102.3

Q ss_pred             cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee--eccccccCeEEEEECCCCCEEEEEEecCeEEEEEC
Q psy13076        214 EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM--TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDG  291 (423)
Q Consensus       214 ~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~--~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~  291 (423)
                      .+.+-...+..++|+|+...++++....+.|..++... +...  .+.+ ....-.+++..++.++++--.++.+.+++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            34455567899999998888788888889998888643 3322  2222 234567778778877776556888998887


Q ss_pred             CCccc------eec--ccc-cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC---cceeeeeee---C-c---eeEe
Q psy13076        292 ASADL------VSE--LGN-PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET---KSAVSEFLM---G-N---QVED  352 (423)
Q Consensus       292 ~~~~~------~~~--~~~-~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~---~~~i~~~~~---~-~---~~~~  352 (423)
                      .....      ...  +.. ..++.++.+++|+|.++.|+.+-...-.+||.+..   ...+.....   . .   -...
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            33211      111  111 13567799999999988888887777788888764   211111100   0 0   0112


Q ss_pred             eEEEEEe-cCcEEEEEeCCCcEEEEecCCCCCceEEecc-CC------CceeEEEecCCCCeEEEe
Q psy13076        353 QQVSCLW-QGDYLLTVSLSGFISYLDVNNPSTPIRVIKG-HN------KPITALALSPDRGTVFTG  410 (423)
Q Consensus       353 ~~~~~~~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-h~------~~v~~i~~sp~~~~l~s~  410 (423)
                      ..+.+.+ .|+.++....+..+..+|..........+.. ..      ..--.|+|.|+|++.++.
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            2333444 4555566666777888874332111122222 11      235679999999877654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.48  E-value=0.012  Score=55.50  Aligned_cols=159  Identities=19%  Similarity=0.265  Sum_probs=90.6

Q ss_pred             CCeeEEEECCCCCeEEEEEcCCce--eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE--cCCC
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRER--FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF--EGPP  251 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~--~~~~  251 (423)
                      ..+..-+|+|+++.++...-....  ...++..+++.....+. ....-....|+|++..++.+...|+...+|  |...
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            345566799999887766433222  23333444443322222 222334567999999888888888876555  4433


Q ss_pred             ceeeeeccccccCeEEEEECCCCCEEEEEEe-cCe--EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC-
Q psy13076        252 FKFKMTKQEHSRFVQAVRYSPSGSHFASAGF-DGK--VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD-  327 (423)
Q Consensus       252 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-  327 (423)
                      ..... +......-..-.|+|||++++..+. .|.  |.+.+...... ..+...  .+.-..-.|+|||++++..+.. 
T Consensus       272 ~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~--~~~~~~p~~SpdG~~i~~~~~~~  347 (425)
T COG0823         272 KNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS--GGGNSNPVWSPDGDKIVFESSSG  347 (425)
T ss_pred             Cccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc--CCCCcCccCCCCCCEEEEEeccC
Confidence            22211 2222222336689999998877764 444  55666554443 233221  1222367899999998877643 


Q ss_pred             Cc--EEEEecCCcc
Q psy13076        328 KT--CKLWDIETKS  339 (423)
Q Consensus       328 ~~--i~iwd~~~~~  339 (423)
                      +.  |-+.|+.++.
T Consensus       348 g~~~i~~~~~~~~~  361 (425)
T COG0823         348 GQWDIDKNDLASGG  361 (425)
T ss_pred             CceeeEEeccCCCC
Confidence            33  6666666554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.42  E-value=0.095  Score=47.92  Aligned_cols=224  Identities=15%  Similarity=0.158  Sum_probs=98.1

Q ss_pred             eCCCCCeEEEec----CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC
Q psy13076         98 GDPKGKNFLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP  173 (423)
Q Consensus        98 ~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  173 (423)
                      +.++|+.+++.+    ...+.+-++++++..+...+-.........+|+.+.++-......++--|+.+++........ 
T Consensus        43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-  121 (386)
T PF14583_consen   43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP-  121 (386)
T ss_dssp             B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE---
T ss_pred             cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC-
Confidence            345565555532    234566677777766554432222224556787777654444567888888887654433332 


Q ss_pred             CCCCeeEEEEC--CCCCeEEEEEcCCcee------------------eEEEe-ecCCcceecccCCCcceeEEEEecCCC
Q psy13076        174 IGGPIKDIAWS--PDNQRMVVVGEGRERF------------------GHVFM-SETGTSVGEISGQSKPINSCDFKPSRP  232 (423)
Q Consensus       174 ~~~~v~~v~~s--~~~~~~~~~~~~~~~~------------------~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~  232 (423)
                       ..-+....|.  .|+..++.+.......                  ..++. .........+......+..+.|+|..+
T Consensus       122 -~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 -DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP  200 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred             -cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence             2333344553  4555554443211110                  11111 111112233333445567888999888


Q ss_pred             eeEEEEeC---CC-eEEEE--cCCCceeee-eccccccCeEEEEECCCCCEEEEEEe-----cCeEEEEECCCccceecc
Q psy13076        233 FRIITGSE---DN-TIAVF--EGPPFKFKM-TKQEHSRFVQAVRYSPSGSHFASAGF-----DGKVFLYDGASADLVSEL  300 (423)
Q Consensus       233 ~~~~s~s~---d~-~i~~~--~~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~s~s~-----dg~i~vwd~~~~~~~~~~  300 (423)
                      ..++-|-.   +. .-++|  +........ ........+..=-|.|||..+.--+.     +..|.-+|..+++.....
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~  280 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM  280 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence            76665532   22 12445  322111111 11112344566678999986654332     335666777776543211


Q ss_pred             cccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        301 GNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       301 ~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                          .......+.-++||++++.=+.|
T Consensus       281 ----~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  281 ----EMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             ----EE-SEEEEEE-TTSSEEEEEE--
T ss_pred             ----eCCceeeeEEcCCCCEEEecCCC
Confidence                12245567778899887764544

>KOG4649|consensus

Probab=97.42  E-value=0.062  Score=45.66  Aligned_cols=70  Identities=23%  Similarity=0.193  Sum_probs=52.1

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      =|++++.|.+.|.+.+++.+++.+.. .+..-...=......+++.++.-|+.|++...-|..+..+....
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w-~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIW-NFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhhee-eeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence            38999999999999999998865533 44332211123445678899999999999999999987766554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.11  Score=48.61  Aligned_cols=194  Identities=16%  Similarity=0.188  Sum_probs=120.1

Q ss_pred             eeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe---cCeEEEEECCCcccee
Q psy13076        222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF---DGKVFLYDGASADLVS  298 (423)
Q Consensus       222 i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~---dg~i~vwd~~~~~~~~  298 (423)
                      ...+++++.+....+....++.+.+.+....+........ .....++++|+++++..+..   ++.+.+.|..+.+...
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            3466777777766666667789999985544433222211 14567999999987766665   6889999998888777


Q ss_pred             cccccccCCCeEEEEECCCCCeEE-EEeCCCcEEEEecCCcceee-eee--eCceeEeeEEEEEecCcEEEEEeC-C--C
Q psy13076        299 ELGNPAHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDIETKSAVS-EFL--MGNQVEDQQVSCLWQGDYLLTVSL-S--G  371 (423)
Q Consensus       299 ~~~~~~~~~~i~~l~~~~~~~~l~-s~s~d~~i~iwd~~~~~~i~-~~~--~~~~~~~~~~~~~~~g~~l~~~~~-~--~  371 (423)
                      ... .+ ... ..++++|+|+.+. +...+++|.+.|.+...... .-.  .........+.+.++|.++..... +  +
T Consensus       155 ~~~-vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~  231 (381)
T COG3391         155 TIP-VG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN  231 (381)
T ss_pred             EEe-cC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence            643 22 223 7899999999554 44578999999977765542 100  011112234555667876544433 3  5


Q ss_pred             cEEEEecCCCCCceEEe-ccCCCceeEEEecCCCCeEEEec-CCCcEEEee
Q psy13076        372 FISYLDVNNPSTPIRVI-KGHNKPITALALSPDRGTVFTGS-HDGFITRWN  420 (423)
Q Consensus       372 ~i~~~~~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~l~s~s-~D~~i~~W~  420 (423)
                      .+...|..+........ .+-. .-..+..+|+++.+.... ..+.+.+=|
T Consensus       232 ~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid  281 (381)
T COG3391         232 NVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVID  281 (381)
T ss_pred             eEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence            78887776643221111 1111 455689999999877663 335554433

>KOG4649|consensus

Probab=97.41  E-value=0.064  Score=45.57  Aligned_cols=313  Identities=15%  Similarity=0.133  Sum_probs=136.7

Q ss_pred             CceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee
Q psy13076         92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF  171 (423)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  171 (423)
                      .++++-.+.....++.+....+..-|..++++...-.- ...|-+-+.- -|.+++.|...+.+.+-++++++..++...
T Consensus        14 spLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~   91 (354)
T KOG4649|consen   14 SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI   91 (354)
T ss_pred             CcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence            34444333333333334445555556666655432110 0111111110 367899999999999999998876665443


Q ss_pred             cCCCCCee-EEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076        172 HPIGGPIK-DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP  250 (423)
Q Consensus       172 ~~~~~~v~-~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~  250 (423)
                      .   +.|. .....+++..+...+.+. . .+..+..+..++...+-......+-.++|.... +..+...|.+.--...
T Consensus        92 ~---~~vk~~a~~d~~~glIycgshd~-~-~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen   92 L---ETVKVRAQCDFDGGLIYCGSHDG-N-FYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTKN  165 (354)
T ss_pred             h---hhhccceEEcCCCceEEEecCCC-c-EEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEEEEccC
Confidence            2   1222 233456666544443332 2 223333333333322211111222233332221 3333333332222211


Q ss_pred             Cceeee-eccccccCeEE--EEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEE-EEEC-CCCCeEEEEe
Q psy13076        251 PFKFKM-TKQEHSRFVQA--VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYA-VAWK-PDGTQLLTAS  325 (423)
Q Consensus       251 ~~~~~~-~~~~~~~~i~~--l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~-l~~~-~~~~~l~s~s  325 (423)
                      ++.... -......+|.+  ++   -++.+.-+.-||.+.-++ .+|+.+.+..   -.+.|.. -+-+ |..+.++.+.
T Consensus       166 ~~~~~~~w~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~---t~GpIf~~Pc~s~Ps~q~i~~~~  238 (354)
T KOG4649|consen  166 PYSSTEFWAATRFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPA---TKGPIFMEPCESRPSCQQISLEN  238 (354)
T ss_pred             CCCcceehhhhcCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeec---CCCceecccccCCCcceEEEEec
Confidence            111000 00001111110  11   144566667788877777 5555554432   2233221 1111 4434444444


Q ss_pred             CCCc--------EEEEecCCcceeeeeeeCceeEeeEEEEEec-CcEEEEEeCCCcEEEEecCCCCCceEEeccCCCc--
Q psy13076        326 GDKT--------CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ-GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP--  394 (423)
Q Consensus       326 ~d~~--------i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~--  394 (423)
                      .+..        -.+|..+++...+.+. ..+........... ...+...+.||.+.+......   +.....|.+.  
T Consensus       239 ~~Cf~~~~p~~ghL~w~~~~g~t~~vy~-~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s---l~~~~s~~g~lq  314 (354)
T KOG4649|consen  239 ENCFCAPLPIAGHLLWATQSGTTLHVYL-SPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS---LAEISSNGGELQ  314 (354)
T ss_pred             CCeEEEeccccceEEEEecCCcEEEEEe-CcccceeccCCCCcchhhhhhhcCCCcEEEEEeccc---ccccccCCCccc
Confidence            3332        3456666654333322 11111000000011 344556778898888755442   1122233332  


Q ss_pred             -eeEEEec------C--CCCeEEEecCCCcEEEeeCCC
Q psy13076        395 -ITALALS------P--DRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       395 -v~~i~~s------p--~~~~l~s~s~D~~i~~W~~~~  423 (423)
                       +..+.++      |  -+..|+.|+.|.+++.||+++
T Consensus       315 ~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~  352 (354)
T KOG4649|consen  315 NLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDT  352 (354)
T ss_pred             eEEEeecCcccccCCeEEccEEEEEEccCeEEEEeccc
Confidence             3333332      2  135577899999999999875

>KOG3617|consensus

Probab=97.34  E-value=0.001  Score=64.84  Aligned_cols=108  Identities=16%  Similarity=0.277  Sum_probs=76.1

Q ss_pred             EEEEecCCCeeEEEEe----CCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceec
Q psy13076        224 SCDFKPSRPFRIITGS----EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE  299 (423)
Q Consensus       224 ~~~~~~~~~~~~~s~s----~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~  299 (423)
                      -..|+|..++ ++.++    ..|.+.+|-.... .... ...+-.+++++|+|..-.|+.|=.-|.+.+|...+.+.. +
T Consensus        20 i~SWHPsePl-fAVA~fS~er~GSVtIfadtGE-Pqr~-Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-t   95 (1416)
T KOG3617|consen   20 ISSWHPSEPL-FAVASFSPERGGSVTIFADTGE-PQRD-VTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-T   95 (1416)
T ss_pred             ccccCCCCce-eEEEEecCCCCceEEEEecCCC-CCcc-cccceehhhhccChHHHHHhhccccceeEEEecCCceee-e
Confidence            3467888776 44443    3567777742111 0000 011223567999999888888888899999987665543 3


Q ss_pred             ccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        300 LGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       300 ~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      .. ..|...|..+.|||+|..|+++..=|.+.+|...
T Consensus        96 v~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            22 3588999999999999999999999999999875

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.34  E-value=0.1  Score=46.93  Aligned_cols=220  Identities=17%  Similarity=0.198  Sum_probs=117.3

Q ss_pred             CCCCCeEEEec--CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce--eE-EeeecC
Q psy13076         99 DPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH--IL-KNEFHP  173 (423)
Q Consensus        99 ~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~--~~-~~~~~~  173 (423)
                      +++.+.+++..  ++.+.-|+.+++... ++......-..+.+...+..+ ++.  ..+.+++.+....  .. ...-..
T Consensus        33 ~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~Lv-~~~--~g~~~~~~~~~~~~t~~~~~~~~~  108 (307)
T COG3386          33 DPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGRLI-ACE--HGVRLLDPDTGGKITLLAEPEDGL  108 (307)
T ss_pred             cCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeecCCCeEE-EEc--cccEEEeccCCceeEEeccccCCC
Confidence            34444344432  455666666543221 111111112223344555444 332  3355666543332  11 111111


Q ss_pred             CCCCeeEEEECCCCCeEEEEEc-----CC--ceeeEEEeec-CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076        174 IGGPIKDIAWSPDNQRMVVVGE-----GR--ERFGHVFMSE-TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA  245 (423)
Q Consensus       174 ~~~~v~~v~~s~~~~~~~~~~~-----~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~  245 (423)
                      .....+++...|+|.+.+....     ..  ...+.++..+ .+....-+..+....+.++|+|++..+.++=+..+.|.
T Consensus       109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~  188 (307)
T COG3386         109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH  188 (307)
T ss_pred             CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence            2245678889999987766443     11  2234455555 33333444444666789999999987677777778888


Q ss_pred             EEcCCCce-------eeeeccccccCeEEEEECCCCCEEEEEEecC-eEEEEECCCccceecccccccCCCeEEEEEC-C
Q psy13076        246 VFEGPPFK-------FKMTKQEHSRFVQAVRYSPSGSHFASAGFDG-KVFLYDGASADLVSELGNPAHKGGVYAVAWK-P  316 (423)
Q Consensus       246 ~~~~~~~~-------~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~-~  316 (423)
                      -|+.....       ............-.++...+|.+-+++..+| .|..|+.. ++++..+..+.  ..+++++|- |
T Consensus       189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~  265 (307)
T COG3386         189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGP  265 (307)
T ss_pred             EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCC
Confidence            87653211       0111112234445677788888776555554 89999877 87777665432  567788884 4


Q ss_pred             CCCeEEEEe
Q psy13076        317 DGTQLLTAS  325 (423)
Q Consensus       317 ~~~~l~s~s  325 (423)
                      +.+.|...+
T Consensus       266 ~~~~L~iTs  274 (307)
T COG3386         266 DLNTLYITS  274 (307)
T ss_pred             CcCEEEEEe
Confidence            445444433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.15  Score=47.80  Aligned_cols=206  Identities=19%  Similarity=0.156  Sum_probs=137.4

Q ss_pred             EEEEEECCCCCEEEE-EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC-CceeeEEEeecCCcc
Q psy13076        134 VNVAKYSPSGFYIAS-GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG-RERFGHVFMSETGTS  211 (423)
Q Consensus       134 i~~~~~sp~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~  211 (423)
                      -..+.+++.+..+.. ...+..|.+.|...........   .+.....++++|+++.+.++... ......+.+..+.+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~---vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP---VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee---eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            346678887775544 4446889999966554432222   22245689999999998887765 345556666666666


Q ss_pred             eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee-e---ccccccCeEEEEECCCCCEEEEEEec---C
Q psy13076        212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM-T---KQEHSRFVQAVRYSPSGSHFASAGFD---G  284 (423)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~-~---~~~~~~~i~~l~~s~~g~~l~s~s~d---g  284 (423)
                      ......-..+ ..+++.|++....++-..++.+.+++........ .   ..........+.++|+|.++...-..   +
T Consensus       153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~  231 (381)
T COG3391         153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN  231 (381)
T ss_pred             EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence            6664433334 8899999999877777789999999965544432 1   11222334678999999976555443   5


Q ss_pred             eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEE-eCCCcEEEEecCCcceeeee
Q psy13076        285 KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       285 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i~~~  344 (423)
                      .+...|..++..........-. ....+..+|+|..+-+. +..+.+.+-|..+.......
T Consensus       232 ~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~  291 (381)
T COG3391         232 NVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG  291 (381)
T ss_pred             eEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence            8999998887765542111112 45678999999988776 44588999998887766554

>KOG4640|consensus

Probab=97.31  E-value=0.0013  Score=62.19  Aligned_cols=78  Identities=19%  Similarity=0.327  Sum_probs=65.0

Q ss_pred             CeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeE-EEEECCCCCeEEEEeCCCcEEEEecCCcceee
Q psy13076        264 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY-AVAWKPDGTQLLTASGDKTCKLWDIETKSAVS  342 (423)
Q Consensus       264 ~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~  342 (423)
                      .+..+.|+|.-.++|.+..+|.|.+.... .+.+.+++.  +...++ +++|.|||+.|+.|-.||+|++-|+.++..+.
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~--p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI--PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC--CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            36678999999999999999999888776 566666653  334444 99999999999999999999999999988776


Q ss_pred             ee
Q psy13076        343 EF  344 (423)
Q Consensus       343 ~~  344 (423)
                      .+
T Consensus        99 ~~  100 (665)
T KOG4640|consen   99 SF  100 (665)
T ss_pred             cc
Confidence            63

>KOG3621|consensus

Probab=97.14  E-value=0.0037  Score=59.91  Aligned_cols=112  Identities=18%  Similarity=0.071  Sum_probs=77.5

Q ss_pred             CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCc--e
Q psy13076        308 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP--I  385 (423)
Q Consensus       308 ~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~--~  385 (423)
                      .+.=-+++..+.+++.|+.-|.+.+|+-..+++...-..+........+++.+...+++|+..|.|-++-++....+  .
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            34334566788999999999999999988876644332222333333444556666778888888888766542211  1


Q ss_pred             EE---eccCCCceeEEEecCCCCeEEEecCCCcEEEe
Q psy13076        386 RV---IKGHNKPITALALSPDRGTVFTGSHDGFITRW  419 (423)
Q Consensus       386 ~~---~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W  419 (423)
                      +.   -+.|...|++++|++++..+.+|..-|.|..=
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~  151 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLT  151 (726)
T ss_pred             eeccccccCCceEEEEEecccccEEeecCCCceEEEE
Confidence            11   13478899999999999999999999988653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.14  E-value=0.25  Score=46.96  Aligned_cols=244  Identities=15%  Similarity=0.158  Sum_probs=115.2

Q ss_pred             ceeEEEEeCCCCeEEE-----ecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec------------CC
Q psy13076         49 PITALALSPDRGTVFT-----GSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN------------GN  111 (423)
Q Consensus        49 ~V~~l~~~~~~~~l~s-----g~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  111 (423)
                      .+....++|+++++|-     |+...++++.|+++++.+........  ...+.+.++++.+++..            ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            3446788999998764     33345699999999876543211111  11277888888887752            22


Q ss_pred             eEEEEecCCCccc--ccccCCcce--EEEEEECCCCCEEEEEccC----CcEEEEEcCCC---ceeEEeeecCCCCCeeE
Q psy13076        112 SVIIRNIENPAIS--DIYTEHSCA--VNVAKYSPSGFYIASGDIS----GKVRIWDTVNK---EHILKNEFHPIGGPIKD  180 (423)
Q Consensus       112 ~~~i~~~~~~~~~--~~~~~h~~~--i~~~~~sp~~~~l~s~~~d----~~i~vwd~~~~---~~~~~~~~~~~~~~v~~  180 (423)
                      .+..+.+.++...  -+|.+....  ...+..++|+++++.....    ..+.+-+....   ............+....
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            4667777666444  344443332  5678889999988754332    34666676653   11111111112222223


Q ss_pred             EEECCCCCeEEEEEcCCceeeEEEeec--CCc---ceecccCCCcceeEEEEecCCCeeEEEEeCCC--eEEEEcCC-Cc
Q psy13076        181 IAWSPDNQRMVVVGEGRERFGHVFMSE--TGT---SVGEISGQSKPINSCDFKPSRPFRIITGSEDN--TIAVFEGP-PF  252 (423)
Q Consensus       181 v~~s~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~-~~  252 (423)
                      +...  +..+.+.+......+.+....  ...   ....+..+.....-..+...+.++++.-..++  .|.+++.. ..
T Consensus       283 v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~  360 (414)
T PF02897_consen  283 VDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK  360 (414)
T ss_dssp             EEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred             EEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence            3333  333333333222222232221  111   11133344433333333344555566666655  46667765 32


Q ss_pred             eeeeeccccccCeEEEEECCCCCEE-EE-EEe--cCeEEEEECCCccc
Q psy13076        253 KFKMTKQEHSRFVQAVRYSPSGSHF-AS-AGF--DGKVFLYDGASADL  296 (423)
Q Consensus       253 ~~~~~~~~~~~~i~~l~~s~~g~~l-~s-~s~--dg~i~vwd~~~~~~  296 (423)
                      ............|..+...+++..+ ++ .|.  -+.++.+|+.+++.
T Consensus       361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            2221111122234455545555432 22 221  34677777776653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.13  E-value=0.019  Score=57.60  Aligned_cols=183  Identities=16%  Similarity=0.248  Sum_probs=110.4

Q ss_pred             eeeEEEE--eCCEEEEEeccceEEEEeccCCCCc--------eeeccc-ccCceeEEEEeCCCCeEEE-ecCCCceEEee
Q psy13076          8 QQVSCLW--QGDYLLTVSLSGFISYLDVNNPSTP--------IRVIKG-HNKPITALALSPDRGTVFT-GSHDGFITRWN   75 (423)
Q Consensus         8 ~~~~~~~--~~~~~~~~~~dg~i~~~d~~~~~~~--------~~~~~g-h~~~V~~l~~~~~~~~l~s-g~~D~~i~vW~   75 (423)
                      +++++-+  |..|++-++   .|.|+.......+        +.++.| +..|-..+.-..+..+|+- ......|+--|
T Consensus       434 ~~Lavg~k~DrSfVvRg~---~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mD  510 (794)
T PF08553_consen  434 SSLAVGYKNDRSFVVRGS---KIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMD  510 (794)
T ss_pred             ceeEeeeccCceEEECCC---cEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceEEEe
Confidence            3566665  566666544   4777754311111        111222 1122222333334555444 45678899999


Q ss_pred             cCCcceeecccCCCCCCceEEeeC------CCCCeEEEecCCeEEEEecCCC--cccc-cc-c-CCcceEEEEEECCCCC
Q psy13076         76 AKTEYIFATLPRTQRGQPIVLGGD------PKGKNFLYTNGNSVIIRNIENP--AISD-IY-T-EHSCAVNVAKYSPSGF  144 (423)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~--~~~~-~~-~-~h~~~i~~~~~sp~~~  144 (423)
                      ++.|+++..-.........-++.+      ...+.|+.-+.+.+..||+.-.  ++.. .. . ......++++-+.+| 
T Consensus       511 Le~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-  589 (794)
T PF08553_consen  511 LERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-  589 (794)
T ss_pred             cCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-
Confidence            999998877654443332222222      1236688888889998987532  2221 11 1 123456777777777 


Q ss_pred             EEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076        145 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       145 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                      +||.|+.+|.||+||-....  .+..+++.+.||..|..+.||+++++.+..
T Consensus       590 ~iavgs~~G~IRLyd~~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  590 YIAVGSNKGDIRLYDRLGKR--AKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             eEEEEeCCCcEEeecccchh--hhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            78999999999999943221  234566778999999999999999987643

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640|consensus

Probab=97.10  E-value=0.0033  Score=59.52  Aligned_cols=93  Identities=16%  Similarity=0.198  Sum_probs=69.6

Q ss_pred             ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeE-EEEECCCCCEEEEEEecCeEEEEECCCccceec
Q psy13076        221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQ-AVRYSPSGSHFASAGFDGKVFLYDGASADLVSE  299 (423)
Q Consensus       221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~-~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~  299 (423)
                      .+.-+.|+|..+. +|.+..+|.+.++... +....+..-+...++ +++|.|||++||.|=.||+|++-|..++..+..
T Consensus        22 ~i~~~ewnP~~dL-iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   22 NIKRIEWNPKMDL-IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             ceEEEEEcCccch-hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            4667788998875 8888889988777655 444555554555555 999999999999999999999999999887765


Q ss_pred             ccccccCCCeEEEEECC
Q psy13076        300 LGNPAHKGGVYAVAWKP  316 (423)
Q Consensus       300 ~~~~~~~~~i~~l~~~~  316 (423)
                      ... .-...|.++-|+|
T Consensus       100 ~~~-s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLF-SVETDISKGIWDR  115 (665)
T ss_pred             ccc-ccccchheeeccc
Confidence            321 2345577777764

>KOG2444|consensus

Probab=97.09  E-value=0.00094  Score=55.24  Aligned_cols=142  Identities=13%  Similarity=0.132  Sum_probs=83.5

Q ss_pred             EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC-ceeEeeE
Q psy13076        276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG-NQVEDQQ  354 (423)
Q Consensus       276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~-~~~~~~~  354 (423)
                      .+...+.||.|.-++.+..+....- ..-+...   ...-.-+.-++.|+.+|.|.+|++............ .......
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rs-e~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~  107 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRS-ERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG  107 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhh-hhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence            3455667888877776543322110 0112111   112223467899999999999998733222111111 1111111


Q ss_pred             EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCC-CceeEEEecCCCCeEEEe--cCCCcEEEeeCC
Q psy13076        355 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN-KPITALALSPDRGTVFTG--SHDGFITRWNAK  422 (423)
Q Consensus       355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~-~~v~~i~~sp~~~~l~s~--s~D~~i~~W~~~  422 (423)
                      +...-++....++..+|.++.|++..... +....+|+ .++.....+..++.|+.+  |.|+.++.|+++
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCce-eeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            11112445677889999999999877543 23345666 677777777778888877  888888888875

>KOG2079|consensus

Probab=97.06  E-value=0.034  Score=56.28  Aligned_cols=76  Identities=18%  Similarity=0.322  Sum_probs=58.9

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      ++.-..+.+++.++..|.+...|+..+-.+...=+.-.++|++++|+.+|.+++.|=.+|.|.+||...++.++.+
T Consensus        93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i  168 (1206)
T KOG2079|consen   93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI  168 (1206)
T ss_pred             eeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence            3444578899999999999999986533321111123689999999999999999999999999999987776654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.05  E-value=0.18  Score=43.77  Aligned_cols=172  Identities=12%  Similarity=0.171  Sum_probs=90.9

Q ss_pred             ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCC-CcceeEEEEecCCCeeEEEEeCCCeEEEEcC
Q psy13076        171 FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ-SKPINSCDFKPSRPFRIITGSEDNTIAVFEG  249 (423)
Q Consensus       171 ~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~  249 (423)
                      +......+..++|+|+.+.++++.+.......+ . ..|+.++.+... ......+++..++.+ +++.-.++.+.+++.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~el-s-~~G~vlr~i~l~g~~D~EgI~y~g~~~~-vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYEL-S-LDGKVLRRIPLDGFGDYEGITYLGNGRY-VLSEERDQRLYIFTI   93 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEE-E-TT--EEEEEE-SS-SSEEEEEE-STTEE-EEEETTTTEEEEEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEE-c-CCCCEEEEEeCCCCCCceeEEEECCCEE-EEEEcCCCcEEEEEE
Confidence            344455689999999999999988776554222 2 245666655433 356777888766644 344335788888765


Q ss_pred             CCc----ee----eee--cc-ccccCeEEEEECCCCCEEEEEEecCeEEEEECCC---ccceec-----cc-ccccCCCe
Q psy13076        250 PPF----KF----KMT--KQ-EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS---ADLVSE-----LG-NPAHKGGV  309 (423)
Q Consensus       250 ~~~----~~----~~~--~~-~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~---~~~~~~-----~~-~~~~~~~i  309 (423)
                      ...    ..    ...  .. .++..+-.++|+|.++.|+.+-......++....   ...+..     +. .......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            211    11    111  11 2344578899999988777776665556665442   111111     11 11234457


Q ss_pred             EEEEECCC-CCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076        310 YAVAWKPD-GTQLLTASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       310 ~~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      .+++++|. +.+++.+..++.|..+| .+++.+..+..
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L  210 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSL  210 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEe
Confidence            89999995 45666677788899999 55665555433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1008|consensus

Probab=97.05  E-value=0.00021  Score=67.32  Aligned_cols=197  Identities=14%  Similarity=0.127  Sum_probs=112.1

Q ss_pred             eeEEEECCCC-CeEEEEEcCCceeeEEEeecCCcc-eecccCCCcceeEEEEecCCCeeEEEEe----CCCeEEEEcCCC
Q psy13076        178 IKDIAWSPDN-QRMVVVGEGRERFGHVFMSETGTS-VGEISGQSKPINSCDFKPSRPFRIITGS----EDNTIAVFEGPP  251 (423)
Q Consensus       178 v~~v~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~s~s----~d~~i~~~~~~~  251 (423)
                      +.++++.-+. +.++.+|...++........+..+ .....++.++.++++|++-+...+|+|-    .|..+.+||.+.
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s  138 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS  138 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence            3444444332 345555544444444444443333 4456678889999999998666566653    355789998653


Q ss_pred             c----eeeeecc-ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc-ceecccccccCCCeEEEEECC-CCCeEEEE
Q psy13076        252 F----KFKMTKQ-EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-LVSELGNPAHKGGVYAVAWKP-DGTQLLTA  324 (423)
Q Consensus       252 ~----~~~~~~~-~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~~~~-~~~~l~s~  324 (423)
                      .    +....+. +......+++|-.+.+++.+|.....+.++|++... ....+    .+..+..+..+| .++++++.
T Consensus       139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceecCCCCCceecc
Confidence            2    1011111 122334578888889999999999999999987432 22222    123456678888 77888776


Q ss_pred             eCCCcEEEEec-CCcce-eeeeeeCc---eeEeeEEEEEe--cCcEEEEEeCCCcEEEEecC
Q psy13076        325 SGDKTCKLWDI-ETKSA-VSEFLMGN---QVEDQQVSCLW--QGDYLLTVSLSGFISYLDVN  379 (423)
Q Consensus       325 s~d~~i~iwd~-~~~~~-i~~~~~~~---~~~~~~~~~~~--~g~~l~~~~~~~~i~~~~~~  379 (423)
                      . |+.|-+||. ..-+. +.......   +.....+...|  .|...+.--.++.|+++++.
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            5 999999993 22111 11111111   11122333333  23333333456788998875

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.02  E-value=0.19  Score=43.46  Aligned_cols=189  Identities=18%  Similarity=0.291  Sum_probs=100.7

Q ss_pred             EECCCCCEEEEEccC-----CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce---eeE-------
Q psy13076        138 KYSPSGFYIASGDIS-----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER---FGH-------  202 (423)
Q Consensus       138 ~~sp~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~---~~~-------  202 (423)
                      .|||||.+|...-.|     |.|-|||...+ ....-++..++-....+.+.+||+.++++..+-+.   +++       
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds  198 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS  198 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence            599999999865433     67999998743 22334555555455789999999999988653211   111       


Q ss_pred             ------EEeecCCcceec--cc--CCCcceeEEEEecCCCeeEEEEeCCCe-------EEEEc-CCCceeee----eccc
Q psy13076        203 ------VFMSETGTSVGE--IS--GQSKPINSCDFKPSRPFRIITGSEDNT-------IAVFE-GPPFKFKM----TKQE  260 (423)
Q Consensus       203 ------~~~~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~~~~s~s~d~~-------i~~~~-~~~~~~~~----~~~~  260 (423)
                            +.+..++..+.+  +.  .+.-++..++..+++.. ...|...|.       +-.+. .++.+...    +...
T Consensus       199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv-wfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~  277 (366)
T COG3490         199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV-WFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA  277 (366)
T ss_pred             cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcE-EEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence                  111123333221  22  12234555555555432 111211110       00000 01111100    1112


Q ss_pred             cccCeEEEEECCCCCEEEEEEecCe-EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEe
Q psy13076        261 HSRFVQAVRYSPSGSHFASAGFDGK-VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD  334 (423)
Q Consensus       261 ~~~~i~~l~~s~~g~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd  334 (423)
                      ..++|-+++.+.+..+++..+..|+ ..+||..++..+..-..    ..+..++-  ...-++..+.+|.+.++.
T Consensus       278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l----~daaGva~--~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL----PDAAGVAA--AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc----ccccccee--ccCceEEecCCceEEecc
Confidence            2456788999887777777776554 56999999987654322    11233433  333455566788888774

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.99  E-value=0.15  Score=50.40  Aligned_cols=154  Identities=13%  Similarity=0.236  Sum_probs=83.1

Q ss_pred             CeeEEEECCCCCeEEEEEc----CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC-CeEEEEcCCC
Q psy13076        177 PIKDIAWSPDNQRMVVVGE----GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED-NTIAVFEGPP  251 (423)
Q Consensus       177 ~v~~v~~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d-~~i~~~~~~~  251 (423)
                      .+.+.+++|+|+.++.+..    ..+...++|....+.....+.. ......-.|+|++.. +++.+.. ...++.....
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~-lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADA-VWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCc-eEEEecCcceEEEeccCC
Confidence            4678899999999888762    1122345565443332222221 123667789998765 3333222 2222222111


Q ss_pred             -cee-eeecc------ccccCeEEEEECCCCCEEEEEEecCeEEE---EECCCccceecccc-----cccCCCeEEEEEC
Q psy13076        252 -FKF-KMTKQ------EHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGN-----PAHKGGVYAVAWK  315 (423)
Q Consensus       252 -~~~-~~~~~------~~~~~i~~l~~s~~g~~l~s~s~dg~i~v---wd~~~~~~~~~~~~-----~~~~~~i~~l~~~  315 (423)
                       ..+ .....      .....|..++|||||..++... +|+|++   -....|+  ..+..     ..-...+.+++|.
T Consensus       429 ~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        429 TGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             CceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCccccceEe
Confidence             010 00000      2245699999999999887765 577776   4433443  12210     1122235789999


Q ss_pred             CCCCeEEEEeCCCcEEEEecC
Q psy13076        316 PDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       316 ~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      +++.++ .+..+....+|.+.
T Consensus       506 ~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        506 TGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             cCCEEE-EEecCCCCceEEEe
Confidence            998855 55555555566543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.98  E-value=0.2  Score=47.52  Aligned_cols=212  Identities=16%  Similarity=0.146  Sum_probs=103.9

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEe-ecCCcceeeccc
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW-NAKTEYIFATLP   86 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW-~~~~~~~~~~~~   86 (423)
                      |-+..+|.|++++. ..||...+..... .. -    ...++-..+.|.+.++ +|+-...++|++. +++... ...+.
T Consensus        36 ~~ls~npngr~v~V-~g~geY~iyt~~~-~r-~----k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~-~k~i~  106 (443)
T PF04053_consen   36 QSLSHNPNGRFVLV-CGDGEYEIYTALA-WR-N----KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEV-VKSIK  106 (443)
T ss_dssp             SEEEE-TTSSEEEE-EETTEEEEEETTT-TE-E----EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-T-T----
T ss_pred             eeEEECCCCCEEEE-EcCCEEEEEEccC-Cc-c----cccCceeEEEEecCcc-EEEEECCCeEEEEEcCcccc-ceEEc
Confidence            55677788999998 6677777776221 11 1    1245666788988444 6666668889996 443222 11111


Q ss_pred             CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC---
Q psy13076         87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK---  163 (423)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~---  163 (423)
                      ... ... -+.+   |..+...+...+.++|+++++....+...  .|..+.|+++|+++|-.+.+ ++.+.+....   
T Consensus       107 ~~~-~~~-~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~  178 (443)
T PF04053_consen  107 LPF-SVE-KIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVA  178 (443)
T ss_dssp             -SS--EE-EEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHH
T ss_pred             CCc-ccc-eEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcc
Confidence            110 011 1111   77777777778999999999887776543  48899999999999988755 5666664322   


Q ss_pred             ---------ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCee
Q psy13076        164 ---------EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFR  234 (423)
Q Consensus       164 ---------~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  234 (423)
                               ....   .+.....|.+..|..+  .++.....  .. ..+.   +.....+..-..++.-+.+.|..+ +
T Consensus       179 ~~~~~g~e~~f~~---~~E~~~~IkSg~W~~d--~fiYtT~~--~l-kYl~---~Ge~~~i~~ld~~~yllgy~~~~~-~  246 (443)
T PF04053_consen  179 AIPEEGVEDAFEL---IHEISERIKSGCWVED--CFIYTTSN--HL-KYLV---NGETGIIAHLDKPLYLLGYLPKEN-R  246 (443)
T ss_dssp             HBTTTB-GGGEEE---EEEE-S--SEEEEETT--EEEEE-TT--EE-EEEE---TTEEEEEEE-SS--EEEEEETTTT-E
T ss_pred             cccccCchhceEE---EEEecceeEEEEEEcC--EEEEEcCC--eE-EEEE---cCCcceEEEcCCceEEEEEEccCC-E
Confidence                     1111   1112467889999877  44443332  11 1111   111122222233455555555333 3


Q ss_pred             EEEEeCCCeEEEEc
Q psy13076        235 IITGSEDNTIAVFE  248 (423)
Q Consensus       235 ~~s~s~d~~i~~~~  248 (423)
                      +.....|+.+..+.
T Consensus       247 ly~~Dr~~~v~~~~  260 (443)
T PF04053_consen  247 LYLIDRDGNVISYE  260 (443)
T ss_dssp             EEEE-TT--EEEEE
T ss_pred             EEEEECCCCEEEEE
Confidence            55555666665554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.93  E-value=0.29  Score=45.82  Aligned_cols=162  Identities=12%  Similarity=0.072  Sum_probs=88.8

Q ss_pred             ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc------ccCCCeEEEEECC-----CC---CeEEE
Q psy13076        258 KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP------AHKGGVYAVAWKP-----DG---TQLLT  323 (423)
Q Consensus       258 ~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~~~i~~l~~~~-----~~---~~l~s  323 (423)
                      +....+.|++++.|.- .++|.|..+|.+.|.|++....+..-...      .....++++.|.-     |+   -.|++
T Consensus        82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            3445788999999844 49999999999999999877665442111      1234577787752     33   47889


Q ss_pred             EeCCCcEEEEecC--Ccceee-eeee---CceeEeeEEEEEe------------------cC---cEEEEEeCCCcEEEE
Q psy13076        324 ASGDKTCKLWDIE--TKSAVS-EFLM---GNQVEDQQVSCLW------------------QG---DYLLTVSLSGFISYL  376 (423)
Q Consensus       324 ~s~d~~i~iwd~~--~~~~i~-~~~~---~~~~~~~~~~~~~------------------~g---~~l~~~~~~~~i~~~  376 (423)
                      |...|.+.+|.+.  .+.... .+..   ........+.+..                  .|   ..++.......++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            9999999999874  221111 1110   0111111122110                  11   234555667888888


Q ss_pred             ecCCCCCceEEeccCCCceeEEEec-----CCCCeEEEecCCCcEEEeeC
Q psy13076        377 DVNNPSTPIRVIKGHNKPITALALS-----PDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       377 ~~~~~~~~~~~~~~h~~~v~~i~~s-----p~~~~l~s~s~D~~i~~W~~  421 (423)
                      ...+.....+.+ ...-....+.+-     ..+..|++--.||.|+++.+
T Consensus       241 ~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL  289 (395)
T PF08596_consen  241 KPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL  289 (395)
T ss_dssp             -TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred             eCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence            777655544444 322344455663     24566888889999999975

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.89  E-value=0.093  Score=38.69  Aligned_cols=101  Identities=20%  Similarity=0.269  Sum_probs=61.9

Q ss_pred             eEEEEECC---CC-CeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCc
Q psy13076        309 VYAVAWKP---DG-TQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP  384 (423)
Q Consensus       309 i~~l~~~~---~~-~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~  384 (423)
                      |++|++..   +| +.|+.||.|..||+|+-.  +.+.++....  ....+... .+..++.+-.+|+|-+|+-...   
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~--~v~~L~~~-~~~~F~Y~l~NGTVGvY~~~~R---   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD--KVTSLCSL-GGGRFAYALANGTVGVYDRSQR---   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc--ceEEEEEc-CCCEEEEEecCCEEEEEeCcce---
Confidence            45555543   43 689999999999999844  3455543322  22222222 4577899999999999875331   


Q ss_pred             eEEeccCCCceeEEEecCCC----CeEEEecCCCcEEE
Q psy13076        385 IRVIKGHNKPITALALSPDR----GTVFTGSHDGFITR  418 (423)
Q Consensus       385 ~~~~~~h~~~v~~i~~sp~~----~~l~s~s~D~~i~~  418 (423)
                      +-..+. ...++++++..-+    +-|++|..+|.|.+
T Consensus        74 lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   74 LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            112222 1236676665433    25899999998753

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.88  E-value=0.39  Score=44.96  Aligned_cols=91  Identities=22%  Similarity=0.225  Sum_probs=57.7

Q ss_pred             eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc--cccCCCeEEEEECCC--------------CCe
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN--PAHKGGVYAVAWKPD--------------GTQ  320 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~i~~l~~~~~--------------~~~  320 (423)
                      .+......+.+++.+|.+++.|+...=|.|.++|..++..+..++.  .++.+++....-...              ..+
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            3444556688999999999988887789999999988876655431  122222211111110              123


Q ss_pred             EEE-EeCCCcEEEEecCCcceeeeeeeC
Q psy13076        321 LLT-ASGDKTCKLWDIETKSAVSEFLMG  347 (423)
Q Consensus       321 l~s-~s~d~~i~iwd~~~~~~i~~~~~~  347 (423)
                      |+. +-.-|.|.||.++.+..+..+..+
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence            332 445778999999999887776543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.87  E-value=0.087  Score=38.83  Aligned_cols=97  Identities=24%  Similarity=0.325  Sum_probs=61.4

Q ss_pred             EEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccccc
Q psy13076        226 DFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH  305 (423)
Q Consensus       226 ~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  305 (423)
                      +|..++...|++|+.|..|++|+......  .... ...++.|+-... ..++.+-.+|+|-+|+....  +....   .
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~e~~~--Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lWRiK---S   79 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGDEIVA--EITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LWRIK---S   79 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCCcEEE--EEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce--eeeec---c
Confidence            34445556799999999999998654322  2222 334667766655 56888999999999986332  22222   1


Q ss_pred             CCCeEEEEECC-C--C-CeEEEEeCCCcEE
Q psy13076        306 KGGVYAVAWKP-D--G-TQLLTASGDKTCK  331 (423)
Q Consensus       306 ~~~i~~l~~~~-~--~-~~l~s~s~d~~i~  331 (423)
                      +..+.++++.. +  | +-|++|-.+|.|-
T Consensus        80 K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   80 KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            23355665433 3  3 4788888888764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.87  E-value=0.4  Score=44.90  Aligned_cols=265  Identities=13%  Similarity=0.221  Sum_probs=126.4

Q ss_pred             eEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC----C-CCeEEEEEc---CCceeeEEE
Q psy13076        133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP----D-NQRMVVVGE---GRERFGHVF  204 (423)
Q Consensus       133 ~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~----~-~~~~~~~~~---~~~~~~~~~  204 (423)
                      .|+.+.|+++..-|+.+-..|.|-||.....+.......    .+-....|.+    + ...+.-+.+   ..-+-+  +
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~g--f   76 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQ----PPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEG--F   76 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------S--GGGSS-SEEE-GGG--TT-SEE--E
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCC----CcccCcccccccccCCCcceEEehhhCCcccccc--c
Confidence            478889999888899999999999988654322110000    0011111111    0 011111100   000000  0


Q ss_pred             eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee--ccc------cccCeEEEEEC-----
Q psy13076        205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT--KQE------HSRFVQAVRYS-----  271 (423)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~--~~~------~~~~i~~l~~s-----  271 (423)
                           ....-+.....+|++++.+.-+ | ++.|..+|.+.+.|.+.....+.  ...      ....++++.|+     
T Consensus        77 -----~P~~l~~~~~g~vtal~~S~iG-F-vaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~  149 (395)
T PF08596_consen   77 -----LPLTLLDAKQGPVTALKNSDIG-F-VAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG  149 (395)
T ss_dssp             -----EEEEEE---S-SEEEEEE-BTS-E-EEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred             -----CchhheeccCCcEeEEecCCCc-E-EEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence                 0111123345688888887554 3 78889999999999877665443  112      33467777775     


Q ss_pred             CCC---CEEEEEEecCeEEEEECC--Ccc-ceecccc--cccCCCeEEEE-ECCC-----------------C---CeEE
Q psy13076        272 PSG---SHFASAGFDGKVFLYDGA--SAD-LVSELGN--PAHKGGVYAVA-WKPD-----------------G---TQLL  322 (423)
Q Consensus       272 ~~g---~~l~s~s~dg~i~vwd~~--~~~-~~~~~~~--~~~~~~i~~l~-~~~~-----------------~---~~l~  322 (423)
                      .|+   -.+++|+..|.+.+|.+-  .+. ....+..  ..+.+.+..+. |+.+                 |   +.++
T Consensus       150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v  229 (395)
T PF08596_consen  150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV  229 (395)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred             CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence            233   368889999999999753  111 1111110  12445554443 3211                 1   1234


Q ss_pred             EEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEE-----EecCcEEEEEeCCCcEEEEecCCCCCceEEecc----CCC
Q psy13076        323 TASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSC-----LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG----HNK  393 (423)
Q Consensus       323 s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~-----~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----h~~  393 (423)
                      ....+..+|++...+.+...+.. ..........+     ...+-.|++...+|.++++-+...+. +....-    +..
T Consensus       230 VvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke-i~~~~l~~~~d~~  307 (395)
T PF08596_consen  230 VVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE-IKSVSLPPPLDSR  307 (395)
T ss_dssp             EEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E-EEEEE-SS---HH
T ss_pred             EEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH-hhcccCCCccccc
Confidence            44557789999998877765554 22222222222     12466788889999999998876433 222222    223


Q ss_pred             ceeEEEecCCCCeEEEecC
Q psy13076        394 PITALALSPDRGTVFTGSH  412 (423)
Q Consensus       394 ~v~~i~~sp~~~~l~s~s~  412 (423)
                      .+...+++++|..++-.|.
T Consensus       308 ~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  308 RLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             HHTT-EE-TTS-EEEE-SS
T ss_pred             cccccEECCCCCEEEEeCc
Confidence            4566778888887765543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.87  E-value=0.43  Score=45.14  Aligned_cols=70  Identities=16%  Similarity=0.226  Sum_probs=46.0

Q ss_pred             ccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEe
Q psy13076        262 SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD  334 (423)
Q Consensus       262 ~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd  334 (423)
                      .+++..+++||+|+++|.-..+|.+.+....-.+...++... -......+.|..+...++.-  ...+.+..
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            357899999999999999999999998876544444444322 23455678887654333322  34455554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.82  E-value=0.03  Score=56.27  Aligned_cols=139  Identities=17%  Similarity=0.199  Sum_probs=88.7

Q ss_pred             CEEEEE-EecCeEEEEECCCccceecccccccCCCeEEEEECCC-------CCeEEEEeCCCcEEEEecCCcc--eeeee
Q psy13076        275 SHFASA-GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD-------GTQLLTASGDKTCKLWDIETKS--AVSEF  344 (423)
Q Consensus       275 ~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~-------~~~l~s~s~d~~i~iwd~~~~~--~i~~~  344 (423)
                      .+|+.- .....|+-.|+..|+.+.++... ....|..+  .|+       ...-+.|-.+..+..||.+-..  ++...
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~-~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVH-DDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecC-CCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            344433 34578899999999998887531 22224444  442       2345667788889999987542  33211


Q ss_pred             eeCce-eEeeEEEEE--ecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        345 LMGNQ-VEDQQVSCL--WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       345 ~~~~~-~~~~~~~~~--~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                        .++ .....++|.  ....+||.|+.+|.|++||-.. .+....+.|-..||..|+.+.||+||+..+ +.++.+.+
T Consensus       571 --~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~  645 (794)
T PF08553_consen  571 --SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLG-KRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLID  645 (794)
T ss_pred             --ccccccCCCceEEEecCCceEEEEeCCCcEEeecccc-hhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence              111 111123332  2567899999999999999533 333334667789999999999999988655 44555554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.74  E-value=0.34  Score=44.94  Aligned_cols=192  Identities=17%  Similarity=0.214  Sum_probs=90.3

Q ss_pred             CCeeEEEEeCCCeEEEEcCCC----ceeeeeccc---cc----cCeEEEEECCCCCEEEEEE--ec----CeEEEEECCC
Q psy13076        231 RPFRIITGSEDNTIAVFEGPP----FKFKMTKQE---HS----RFVQAVRYSPSGSHFASAG--FD----GKVFLYDGAS  293 (423)
Q Consensus       231 ~~~~~~s~s~d~~i~~~~~~~----~~~~~~~~~---~~----~~i~~l~~s~~g~~l~s~s--~d----g~i~vwd~~~  293 (423)
                      +.++++-|-..+.|+++|..+    .++....+.   +.    ...-.+.--|+|+.++++=  .+    |-+.+.|.++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            455566666788999998642    222222221   11    1111233347888776643  33    3577888777


Q ss_pred             ccceeccccccc-CCCeEEEEECCCCCeEEEEeC--------------------CCcEEEEecCCcceeeeeeeCcee-E
Q psy13076        294 ADLVSELGNPAH-KGGVYAVAWKPDGTQLLTASG--------------------DKTCKLWDIETKSAVSEFLMGNQV-E  351 (423)
Q Consensus       294 ~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~s~s~--------------------d~~i~iwd~~~~~~i~~~~~~~~~-~  351 (423)
                      .+.......... ...-.++.|.|..+.++|...                    -.++.+||+++.+.++++..+... .
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            766555433211 223467888888787777543                    257999999999999988776532 2


Q ss_pred             eeEEEEEec---CcEEEEEeCCCcEEEEec-CCCCCc---eEEe-----------------ccCCCceeEEEecCCCCeE
Q psy13076        352 DQQVSCLWQ---GDYLLTVSLSGFISYLDV-NNPSTP---IRVI-----------------KGHNKPITALALSPDRGTV  407 (423)
Q Consensus       352 ~~~~~~~~~---g~~l~~~~~~~~i~~~~~-~~~~~~---~~~~-----------------~~h~~~v~~i~~sp~~~~l  407 (423)
                      ...+.+.++   ..-++.+..+.+|.+|-- ....-.   +..+                 ..-..-|++|.+|.|+++|
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL  326 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL  326 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence            333444432   233555556666655543 221110   0011                 0113458999999999997


Q ss_pred             -EEecCCCcEEEeeCC
Q psy13076        408 -FTGSHDGFITRWNAK  422 (423)
Q Consensus       408 -~s~s~D~~i~~W~~~  422 (423)
                       ++.-.+|.||.||++
T Consensus       327 Yvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  327 YVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             EEEETTTTEEEEEE-S
T ss_pred             EEEcccCCcEEEEecC
Confidence             577789999999975

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.70  E-value=0.7  Score=45.28  Aligned_cols=78  Identities=17%  Similarity=0.177  Sum_probs=47.9

Q ss_pred             CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcE
Q psy13076        284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY  363 (423)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~  363 (423)
                      |.+.=+|+.+++...+.....  ....+. +.-.+..++.+..||.++.+|.++++.+-++..+.......++...+|+.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q  517 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ  517 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence            346667777777655443211  001111 11245577778889999999999999988877665555555554445544


Q ss_pred             E
Q psy13076        364 L  364 (423)
Q Consensus       364 l  364 (423)
                      .
T Consensus       518 Y  518 (527)
T TIGR03075       518 Y  518 (527)
T ss_pred             E
Confidence            3

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.63  E-value=0.52  Score=46.69  Aligned_cols=60  Identities=22%  Similarity=0.336  Sum_probs=34.8

Q ss_pred             CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc-ce---ecccCCC-cceeEEEEecCCCee
Q psy13076        175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT-SV---GEISGQS-KPINSCDFKPSRPFR  234 (423)
Q Consensus       175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~-~~i~~~~~~~~~~~~  234 (423)
                      .+.|.++.|||||..++.+..++-....+...+.|. .+   ..+.... ..+..+.|.+++...
T Consensus       447 ~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~  511 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV  511 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE
Confidence            457999999999999998875422222222223343 12   1122222 235778899888743

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.61  E-value=0.69  Score=43.98  Aligned_cols=197  Identities=14%  Similarity=0.155  Sum_probs=101.1

Q ss_pred             ceEEEEEECCCCCEEEEE-ccC----CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc-e------
Q psy13076        132 CAVNVAKYSPSGFYIASG-DIS----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE-R------  199 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~-~~d----~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~-~------  199 (423)
                      ..+....++|+|+++|-+ +..    .++++.|+++++.+.. .+..  .....+.|.++++.++....... .      
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            345577899999998854 333    3599999998866543 2221  11123999999998888765442 2      


Q ss_pred             eeEEEeecCCcceec---c-cCCCc-c-eeEEEEecCCCeeEEEEeCCC---eEEEEcCCCc-----eeeeeccccccCe
Q psy13076        200 FGHVFMSETGTSVGE---I-SGQSK-P-INSCDFKPSRPFRIITGSEDN---TIAVFEGPPF-----KFKMTKQEHSRFV  265 (423)
Q Consensus       200 ~~~~~~~~~~~~~~~---~-~~~~~-~-i~~~~~~~~~~~~~~s~s~d~---~i~~~~~~~~-----~~~~~~~~~~~~i  265 (423)
                      ...++....|.....   + ..... . ...+..++++.++++......   .+.+.+....     .............
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence            334555444443322   2 12222 2 457788889998777665544   4666665432     2222211112222


Q ss_pred             EEEEECCCCCEEEEEEe---cCeEEEEECCCccc--ee-cccccccCC--CeEEEEECCCCCeEEEE-eCCC--cEEEEe
Q psy13076        266 QAVRYSPSGSHFASAGF---DGKVFLYDGASADL--VS-ELGNPAHKG--GVYAVAWKPDGTQLLTA-SGDK--TCKLWD  334 (423)
Q Consensus       266 ~~l~~s~~g~~l~s~s~---dg~i~vwd~~~~~~--~~-~~~~~~~~~--~i~~l~~~~~~~~l~s~-s~d~--~i~iwd  334 (423)
                      ..+... .+.+++....   .+.|.-.++.....  .. .+.  .+..  .+..+..  .+.+|+.. ..++  .|++++
T Consensus       281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~  355 (414)
T PF02897_consen  281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYD  355 (414)
T ss_dssp             EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEE
Confidence            222222 3334333322   34566666665542  11 221  2333  3444443  44455544 4444  488889


Q ss_pred             cC
Q psy13076        335 IE  336 (423)
Q Consensus       335 ~~  336 (423)
                      +.
T Consensus       356 ~~  357 (414)
T PF02897_consen  356 LD  357 (414)
T ss_dssp             TT
T ss_pred             CC
Confidence            88

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2444|consensus

Probab=96.58  E-value=0.0092  Score=49.56  Aligned_cols=77  Identities=16%  Similarity=0.119  Sum_probs=49.3

Q ss_pred             cccceeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEE-EEeCCCCeEEEecCCCceEEeecCCcce
Q psy13076          4 QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITAL-ALSPDRGTVFTGSHDGFITRWNAKTEYI   81 (423)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l-~~~~~~~~l~sg~~D~~i~vW~~~~~~~   81 (423)
                      ++++-+..|-+ ++-|+.|+.+|.|.+|.++-.....-.+..-..+|.+. .-..++.+..++++||.||.|+.+-.+.
T Consensus        59 ~~~e~~~v~~~-~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~  136 (238)
T KOG2444|consen   59 FIDEGQRVVTA-SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV  136 (238)
T ss_pred             hhhcceeeccc-CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce
Confidence            45555666666 77788899999999998763222222222222333322 2233455889999999999999875443

>KOG1897|consensus

Probab=96.55  E-value=1.1  Score=45.60  Aligned_cols=311  Identities=16%  Similarity=0.163  Sum_probs=158.1

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeec----ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCC
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVI----KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQR   90 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~   90 (423)
                      |+.||+++..||.+..+-++..+....-.    -| ..|+.--.|+..++.-+-+.+|+-.-++..+.+-++..+....-
T Consensus       594 d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG-t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev  672 (1096)
T KOG1897|consen  594 DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG-TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEV  672 (1096)
T ss_pred             cceEEEEEcCCceEEEEEEEcccceEccccccccC-CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHh
Confidence            58999999999999888665433222211    12 35776667766555444445566666766655545554433322


Q ss_pred             CCceEEeeCCCCCeEEEecCCeEEEEecCCCccc--ccccCCcceEEEEEECCCCCEEEEEccC--------------Cc
Q psy13076         91 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS--DIYTEHSCAVNVAKYSPSGFYIASGDIS--------------GK  154 (423)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~h~~~i~~~~~sp~~~~l~s~~~d--------------~~  154 (423)
                      ...+.+..+.-...++...++.+.+..++.-.-.  ++..-| .....+++.+....++..+..              ..
T Consensus       673 ~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~  751 (1096)
T KOG1897|consen  673 NHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSF  751 (1096)
T ss_pred             hhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEE
Confidence            2333333333334455566666666555421111  111111 223455666644444443321              13


Q ss_pred             EEEEEcCCCceeEEeeecCC--CCCeeEEEECCCCCeEEEEEcCC-------ceeeE--EEeecCCcceeccc---CCCc
Q psy13076        155 VRIWDTVNKEHILKNEFHPI--GGPIKDIAWSPDNQRMVVVGEGR-------ERFGH--VFMSETGTSVGEIS---GQSK  220 (423)
Q Consensus       155 i~vwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~---~~~~  220 (423)
                      ++++|-.+-+.....++..-  ...+.+..|..|....+++|.+.       ...++  ++..+....+..+.   -...
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            56666544333322222211  12355566887744444444320       11122  22222222222221   1111


Q ss_pred             ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEE--EECCCcccee
Q psy13076        221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL--YDGASADLVS  298 (423)
Q Consensus       221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~v--wd~~~~~~~~  298 (423)
                      +..-+.|+  +   .+.++-+..+++|+....+..+.-..+...+..+...-.|..++.|..-+.+.+  |+...+.. .
T Consensus       832 v~aL~~fn--g---kllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f-~  905 (1096)
T KOG1897|consen  832 VYALVEFN--G---KLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNF-E  905 (1096)
T ss_pred             eeehhhhC--C---eEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCce-E
Confidence            22222222  2   223455678889887665444455566777888888888999999988777654  44434333 2


Q ss_pred             cccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEe
Q psy13076        299 ELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD  334 (423)
Q Consensus       299 ~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd  334 (423)
                      +....-+..+++++.+-.+..+ +.+-.++.+.+-.
T Consensus       906 evArD~~p~Wmtaveil~~d~y-lgae~~gNlf~v~  940 (1096)
T KOG1897|consen  906 EVARDYNPNWMTAVEILDDDTY-LGAENSGNLFTVR  940 (1096)
T ss_pred             EeehhhCccceeeEEEecCceE-EeecccccEEEEE
Confidence            3333446677788877654444 4445566665553

>KOG2395|consensus

Probab=96.53  E-value=0.16  Score=47.75  Aligned_cols=148  Identities=19%  Similarity=0.201  Sum_probs=91.0

Q ss_pred             ECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCe------eEEEEeCCCeEEEEcCCCcee-e
Q psy13076        183 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPF------RIITGSEDNTIAVFEGPPFKF-K  255 (423)
Q Consensus       183 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~s~s~d~~i~~~~~~~~~~-~  255 (423)
                      ...+...++..+..+ ...+-.+.+.|+.+.+.+.+.. |+-+.+.|+..+      .-+.|-.++.+.-||.+-... .
T Consensus       341 ~~~dsnlil~~~~~~-~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k  418 (644)
T KOG2395|consen  341 HRADSNLILMDGGEQ-DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK  418 (644)
T ss_pred             hccccceEeeCCCCc-CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence            333444444433333 3445667778887777766654 666666665432      123455677888888542211 1


Q ss_pred             eecc-----ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076        256 MTKQ-----EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC  330 (423)
Q Consensus       256 ~~~~-----~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i  330 (423)
                      +...     .......|.+-..+| ++++||.+|.|++||. .+...++. .++....|..+..+.+|++++..+ +..+
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTA-lPgLG~~I~hVdvtadGKwil~Tc-~tyL  494 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTA-LPGLGDAIKHVDVTADGKWILATC-KTYL  494 (644)
T ss_pred             eeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhc-ccccCCceeeEEeeccCcEEEEec-ccEE
Confidence            1111     112334566555555 8999999999999996 55544432 246677899999999999987654 5667


Q ss_pred             EEEecC
Q psy13076        331 KLWDIE  336 (423)
Q Consensus       331 ~iwd~~  336 (423)
                      .+-++.
T Consensus       495 lLi~t~  500 (644)
T KOG2395|consen  495 LLIDTL  500 (644)
T ss_pred             EEEEEe
Confidence            777654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.47  E-value=0.014  Score=35.83  Aligned_cols=30  Identities=13%  Similarity=0.320  Sum_probs=27.8

Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076        306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       306 ~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~  335 (423)
                      ...|..++|+|...+||.++.+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            456899999999999999999999999998

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.43  E-value=0.64  Score=41.63  Aligned_cols=157  Identities=17%  Similarity=0.269  Sum_probs=71.6

Q ss_pred             ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       125 ~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      ....+-...+..+..++||++++.++.-....-||--...  ..........++.++.|.|++...++. .+...  ..-
T Consensus       138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~--~~s  212 (302)
T PF14870_consen  138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQI--QFS  212 (302)
T ss_dssp             EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEE--EEE
T ss_pred             EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc--ceEEccCccceehhceecCCCCEEEEe-CCcEE--EEc
Confidence            3344555788889999999999998776666778753322  112222234689999999998765554 22211  111


Q ss_pred             e-ecCCcceec----ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE-c-CCCceeeeeccccccCeEEEEECCCCCEE
Q psy13076        205 M-SETGTSVGE----ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF-E-GPPFKFKMTKQEHSRFVQAVRYSPSGSHF  277 (423)
Q Consensus       205 ~-~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~-~-~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  277 (423)
                      . .+.......    +....-.+..++|.++... .+ ++..+.+..= | .+.++...........+..+.|.++.+-+
T Consensus       213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~-wa-~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf  290 (302)
T PF14870_consen  213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI-WA-VGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF  290 (302)
T ss_dssp             E-TTEEEEE---B-TTSS--S-EEEEEESSSS-E-EE-EESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred             cCCCCccccccccCCcccCceeeEEEEecCCCCE-EE-EeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence            1 111222111    2222334677888877542 44 4445555543 2 23333333333444556777776555445


Q ss_pred             EEEEecCeEEEE
Q psy13076        278 ASAGFDGKVFLY  289 (423)
Q Consensus       278 ~s~s~dg~i~vw  289 (423)
                      +. +.+|.+.-|
T Consensus       291 ~l-G~~G~ll~~  301 (302)
T PF14870_consen  291 VL-GQDGVLLRY  301 (302)
T ss_dssp             EE--STTEEEEE
T ss_pred             EE-CCCcEEEEe
Confidence            44 467776544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.43  E-value=0.79  Score=42.62  Aligned_cols=223  Identities=13%  Similarity=0.144  Sum_probs=92.9

Q ss_pred             CCCeEEEec-CCCceEEeecCCc----ceeecccCCC------CCCceEEeeCCCCCeEEEecC-------CeEEEEecC
Q psy13076         58 DRGTVFTGS-HDGFITRWNAKTE----YIFATLPRTQ------RGQPIVLGGDPKGKNFLYTNG-------NSVIIRNIE  119 (423)
Q Consensus        58 ~~~~l~sg~-~D~~i~vW~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~  119 (423)
                      +.++|+..+ ..+.|.|.|+.+.    ++.+.+....      -..+=.+.+-|+|+.++...+       ..+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            567777766 7789999998853    2333322100      001111233455555444311       133333333


Q ss_pred             CCcccccccC---CcceEEEEEECCCCCEEEEEc--------------------cCCcEEEEEcCCCceeEEeeecCCCC
Q psy13076        120 NPAISDIYTE---HSCAVNVAKYSPSGFYIASGD--------------------ISGKVRIWDTVNKEHILKNEFHPIGG  176 (423)
Q Consensus       120 ~~~~~~~~~~---h~~~i~~~~~sp~~~~l~s~~--------------------~d~~i~vwd~~~~~~~~~~~~~~~~~  176 (423)
                      +-++......   ...--....|.|..+.|+|..                    .-.++.+||..+.+..+...+.....
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            2222211111   112223455677777777764                    24579999999988777666543333


Q ss_pred             CeeEEEECCC--CCeEEEEEcCCceeeEEEeecCCc----ceecccC-----------------CCcceeEEEEecCCCe
Q psy13076        177 PIKDIAWSPD--NQRMVVVGEGRERFGHVFMSETGT----SVGEISG-----------------QSKPINSCDFKPSRPF  233 (423)
Q Consensus       177 ~v~~v~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----------------~~~~i~~~~~~~~~~~  233 (423)
                      -...|.|..+  ..+-++.+.-.....+++..+.+.    .+-.+..                 ...-|+.+.++.++.+
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            4567777654  444444444333333333322221    1111110                 0234678889999999


Q ss_pred             eEEEEeCCCeEEEEcCCC-ceeeeecc------------------ccccCeEEEEECCCCCEEEEE
Q psy13076        234 RIITGSEDNTIAVFEGPP-FKFKMTKQ------------------EHSRFVQAVRYSPSGSHFASA  280 (423)
Q Consensus       234 ~~~s~s~d~~i~~~~~~~-~~~~~~~~------------------~~~~~i~~l~~s~~g~~l~s~  280 (423)
                      +-+++=..|.++.||... .+.++..+                  ......+.+..|.||+.|...
T Consensus       326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            778888899999999643 22222111                  011224677888888866544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.39  E-value=0.7  Score=41.62  Aligned_cols=215  Identities=19%  Similarity=0.160  Sum_probs=108.5

Q ss_pred             EEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCce---
Q psy13076         18 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPI---   94 (423)
Q Consensus        18 ~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~---   94 (423)
                      ++.+--..+.|+-|+..++.  ..++.-. +.+.++..-..+.+|+++..  .+.+++.+++.....+.....+...   
T Consensus        39 L~w~DI~~~~i~r~~~~~g~--~~~~~~p-~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~  113 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGK--KRVFPSP-GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRP  113 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCc--eEEEECC-CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCC
Confidence            45555566788888776433  3333322 23333333334445555433  3566676654431111111111110   


Q ss_pred             -EEeeCCCCCeEEEecC-----C-----eEEEEecC-CCcccccccCCcceEEEEEECCCCCEEEEEccC-CcEEEEEcC
Q psy13076         95 -VLGGDPKGKNFLYTNG-----N-----SVIIRNIE-NPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS-GKVRIWDTV  161 (423)
Q Consensus        95 -~~~~~~~~~~~~~~~~-----~-----~~~i~~~~-~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d-~~i~vwd~~  161 (423)
                       =...+|+|...+...+     .     .-.++.++ .+...+.+.+|-..-+.++||||++.|..+... +.|..|+..
T Consensus       114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence             1234566766665444     1     11244443 455666667777777899999999988887765 677777765


Q ss_pred             C--CceeE---EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEec-CCCeeE
Q psy13076        162 N--KEHIL---KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKP-SRPFRI  235 (423)
Q Consensus       162 ~--~~~~~---~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~  235 (423)
                      .  .....   ...+....+....++...+|...+. +..+......+..+ ++.+..+......+.+++|-- ..+.++
T Consensus       194 ~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~-a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~  271 (307)
T COG3386         194 PATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA-AVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLY  271 (307)
T ss_pred             cccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe-cccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEE
Confidence            2  11100   0111112233445666666665542 22222234555565 777776665545555555543 333334


Q ss_pred             EEEe
Q psy13076        236 ITGS  239 (423)
Q Consensus       236 ~s~s  239 (423)
                      +++.
T Consensus       272 iTs~  275 (307)
T COG3386         272 ITSA  275 (307)
T ss_pred             EEec
Confidence            4443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.19  E-value=1.4  Score=43.19  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=34.8

Q ss_pred             eEEEEcCCCceeeeeccc--cc-------cCeEEEEECCCCC---EEEEEEecCeEEEEECCCccce
Q psy13076        243 TIAVFEGPPFKFKMTKQE--HS-------RFVQAVRYSPSGS---HFASAGFDGKVFLYDGASADLV  297 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~--~~-------~~i~~l~~s~~g~---~l~s~s~dg~i~vwd~~~~~~~  297 (423)
                      .|.-.|..+.+++..++.  |.       ....-+.+..+|+   .++.++.+|.+++.|..+++.+
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            344455556665554443  21       1112234445776   7788999999999999998875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.18  E-value=0.016  Score=35.51  Aligned_cols=33  Identities=12%  Similarity=0.293  Sum_probs=29.1

Q ss_pred             cCceeEEEEeCCCCeEEEecCCCceEEeecCCc
Q psy13076         47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTE   79 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~   79 (423)
                      ..+|.+++|+|..++||.|..||.|.++.++-+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence            357999999999999999999999999988543

>KOG2395|consensus

Probab=96.09  E-value=0.088  Score=49.32  Aligned_cols=133  Identities=18%  Similarity=0.229  Sum_probs=87.7

Q ss_pred             EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC-------eEEEEeCCCcEEEEecCCcce-eeeeeeC
Q psy13076        276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-------QLLTASGDKTCKLWDIETKSA-VSEFLMG  347 (423)
Q Consensus       276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-------~l~s~s~d~~i~iwd~~~~~~-i~~~~~~  347 (423)
                      +|.++.....++-.|...|+.+.+...  +.. |.-+.+.|+.+       .-+.|-.|..|.-||.+-... +-....+
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~--~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~  424 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKF--EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS  424 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeec--cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence            345555566788888899998887753  333 66677777542       124566788899999874322 1112222


Q ss_pred             cee-EeeEEEEE--ecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecC
Q psy13076        348 NQV-EDQQVSCL--WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH  412 (423)
Q Consensus       348 ~~~-~~~~~~~~--~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~  412 (423)
                      ++. ....++|.  ....++++|+.+|.|++||. .+.+....+.|...+|.-|..+.||++|+..+.
T Consensus       425 kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  425 KQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             cccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence            221 11223332  25678999999999999997 444444557888999999999999999886553

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.07  E-value=0.96  Score=40.16  Aligned_cols=144  Identities=19%  Similarity=0.294  Sum_probs=83.7

Q ss_pred             EEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc-----
Q psy13076         12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP-----   86 (423)
Q Consensus        12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~-----   86 (423)
                      +.| ++.|+.|..+| +.+.+...+.++....+  ..+|..+...++-+.|+.=+ |+.+.++++..-.......     
T Consensus         4 ~~~-~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    4 DSW-GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             ccC-CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            344 77778788888 88888855555554443  34599999999877766654 4999999987533222100     


Q ss_pred             -------CCCCCCceE-Ee---eCCCCCeEEEecCCeEEEEecCCC-----cccccccCCcceEEEEEECCCCCEEEEEc
Q psy13076         87 -------RTQRGQPIV-LG---GDPKGKNFLYTNGNSVIIRNIENP-----AISDIYTEHSCAVNVAKYSPSGFYIASGD  150 (423)
Q Consensus        87 -------~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~h~~~i~~~~~sp~~~~l~s~~  150 (423)
                             .......+. +.   .......+++.....+.++.+..+     +..+.+. -...+..++|.  +..++.|.
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEe
Confidence                   000111111 11   222334455566678887766543     1222222 23677888888  44566665


Q ss_pred             cCCcEEEEEcCCCc
Q psy13076        151 ISGKVRIWDTVNKE  164 (423)
Q Consensus       151 ~d~~i~vwd~~~~~  164 (423)
                      . ....+.|+.+..
T Consensus       156 ~-~~f~~idl~~~~  168 (275)
T PF00780_consen  156 S-KGFYLIDLNTGS  168 (275)
T ss_pred             C-CceEEEecCCCC
Confidence            4 447778887544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.98  E-value=0.38  Score=42.78  Aligned_cols=135  Identities=17%  Similarity=0.239  Sum_probs=80.0

Q ss_pred             CCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeee-------
Q psy13076        272 PSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF-------  344 (423)
Q Consensus       272 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~-------  344 (423)
                      ..++.|+.|+.+| +++++.........+.   +...|..+..-|+-+.|++-+ |+.+.++++.........       
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe---ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence            3567899999888 8998883333222221   234489999988877777665 599999998765433311       


Q ss_pred             ------eeCceeEeeEEE--EEecCcEEEEEeCCCcEEEEecCCCC----CceEEeccCCCceeEEEecCCCCeEEEecC
Q psy13076        345 ------LMGNQVEDQQVS--CLWQGDYLLTVSLSGFISYLDVNNPS----TPIRVIKGHNKPITALALSPDRGTVFTGSH  412 (423)
Q Consensus       345 ------~~~~~~~~~~~~--~~~~g~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~  412 (423)
                            ..........+.  ....+...++......+.+|......    ...+. -.-...+.+++|.  ++.|+.|..
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke-~~lp~~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKE-ISLPDPPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEE-EEcCCCcEEEEEe--CCEEEEEeC
Confidence                  000111111122  12345555566666688777766532    22333 2345789999999  556666655


Q ss_pred             CC
Q psy13076        413 DG  414 (423)
Q Consensus       413 D~  414 (423)
                      ++
T Consensus       157 ~~  158 (275)
T PF00780_consen  157 KG  158 (275)
T ss_pred             Cc
Confidence            44

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.95  E-value=1.3  Score=40.51  Aligned_cols=170  Identities=17%  Similarity=0.150  Sum_probs=89.6

Q ss_pred             CeEEEEcCCCc-----eeeee-ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc-ceecccccccCCCeEEEEE
Q psy13076        242 NTIAVFEGPPF-----KFKMT-KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-LVSELGNPAHKGGVYAVAW  314 (423)
Q Consensus       242 ~~i~~~~~~~~-----~~~~~-~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~~  314 (423)
                      |.+.+|+....     ++... ....+.+|++++-- +| +|+.+ .++.|.+|++...+ ....-.. .....+.++..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~-~~~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFY-DSPFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhhee-cceEEEEEEec
Confidence            55666654441     22211 22345677777644 34 44433 46899999988776 3322211 12234555554


Q ss_pred             CCCCCeEEEEeCCCcEEEEecCC--cceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCC------CC-ce
Q psy13076        315 KPDGTQLLTASGDKTCKLWDIET--KSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP------ST-PI  385 (423)
Q Consensus       315 ~~~~~~l~s~s~d~~i~iwd~~~--~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~------~~-~~  385 (423)
                      .  +++++.|...+.+.++.+..  .++..--....+.......+..+++.+++++.+|++.++.....      +. .+
T Consensus       138 ~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L  215 (321)
T PF03178_consen  138 F--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKL  215 (321)
T ss_dssp             E--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred             c--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccc
Confidence            4  56999998888888886543  22221111222333344445556778999999999988876531      11 11


Q ss_pred             E--EeccCCCceeEE---EecCC--CC------eEEEecCCCcEE
Q psy13076        386 R--VIKGHNKPITAL---ALSPD--RG------TVFTGSHDGFIT  417 (423)
Q Consensus       386 ~--~~~~h~~~v~~i---~~sp~--~~------~l~s~s~D~~i~  417 (423)
                      .  ........|+++   ++.|.  +.      .++-++.+|.|-
T Consensus       216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred             eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence            1  122334568888   66662  22      377777888775

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PHA02713 hypothetical protein; Provisional

Probab=95.89  E-value=0.45  Score=47.05  Aligned_cols=144  Identities=9%  Similarity=0.065  Sum_probs=72.2

Q ss_pred             CCCEEEEEEecC-----eEEEEECCCcc--ceecccccccCCCeEEEEECCCCCeEEEEeCCC-----------------
Q psy13076        273 SGSHFASAGFDG-----KVFLYDGASAD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK-----------------  328 (423)
Q Consensus       273 ~g~~l~s~s~dg-----~i~vwd~~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~-----------------  328 (423)
                      +|+..+.|+.++     .+..||..+.+  .+..+..+  ......++.  +|...+.|+.++                 
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~--r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA--LSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc--cccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence            577777787764     37788876543  11222111  111112222  577777776542                 


Q ss_pred             ------cEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCC------cEEEEecCC-C-CCceEEeccCCCc
Q psy13076        329 ------TCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG------FISYLDVNN-P-STPIRVIKGHNKP  394 (423)
Q Consensus       329 ------~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~------~i~~~~~~~-~-~~~~~~~~~h~~~  394 (423)
                            ++..||..+.+-...-.+.... ...-.+..+|...+.|+.++      .+..||..+ . ...+..+......
T Consensus       427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~  505 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIWETLPNFWTGT-IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA  505 (557)
T ss_pred             cccccceEEEECCCCCeEeecCCCCccc-ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence                  4677887665321111111111 11112334677667776432      356788775 2 2222222222222


Q ss_pred             eeEEEecCCCCeEEEecCCC--cEEEeeCCC
Q psy13076        395 ITALALSPDRGTVFTGSHDG--FITRWNAKT  423 (423)
Q Consensus       395 v~~i~~sp~~~~l~s~s~D~--~i~~W~~~~  423 (423)
                      ...+++  ++++.+.||.|+  .+..||+.|
T Consensus       506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        506 LHTILH--DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             ceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence            222222  688889999888  677777654

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=95.47  E-value=2.8  Score=41.02  Aligned_cols=390  Identities=13%  Similarity=0.112  Sum_probs=153.8

Q ss_pred             cceeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccc-------cCceeEEEEeC-----CCCeEEE--ecCCCc-
Q psy13076          6 EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH-------NKPITALALSP-----DRGTVFT--GSHDGF-   70 (423)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh-------~~~V~~l~~~~-----~~~~l~s--g~~D~~-   70 (423)
                      ..+.++++|.|+.++.++..|.+.++.++.....-.....|       ...|..++|-.     +.+.++.  ....+. 
T Consensus        45 ~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~  124 (504)
T PF10433_consen   45 PGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRT  124 (504)
T ss_dssp             T--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EE
T ss_pred             CCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccc
Confidence            46789999999999999999999999886510111111112       45567777764     2333333  222222 


Q ss_pred             -eEE--eecCCcceeec--------ccCCCCCCceEEe-eCCCCCeEEEecCCeEEEEecCC--Ccc--ccccc--C-Cc
Q psy13076         71 -ITR--WNAKTEYIFAT--------LPRTQRGQPIVLG-GDPKGKNFLYTNGNSVIIRNIEN--PAI--SDIYT--E-HS  131 (423)
Q Consensus        71 -i~v--W~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--~~~--~~~~~--~-h~  131 (423)
                       +..  |+...+.....        +..........+. ..|.|..++. ..+.+.+.+...  +..  ...-.  . ..
T Consensus       125 ~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~-~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~  203 (504)
T PF10433_consen  125 HLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVG-GENIIIYKNHLIGSGDYSFLSIPSPPSSSS  203 (504)
T ss_dssp             EEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEE-ESSEEEEEE------TTEEEEE--H-HHHT
T ss_pred             eeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEE-CCEEEEEecccccccccccccccCCccCCC
Confidence             222  44432211000        1000111112222 2233444433 344444433211  110  00000  0 01


Q ss_pred             ceEEEEE-------ECCCCCEEEEEccCCcEEEEEcCCCce-eEEeeecCCCCCeeEEEECCCC-CeEEEEEcCCceeeE
Q psy13076        132 CAVNVAK-------YSPSGFYIASGDISGKVRIWDTVNKEH-ILKNEFHPIGGPIKDIAWSPDN-QRMVVVGEGRERFGH  202 (423)
Q Consensus       132 ~~i~~~~-------~sp~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~-~~~~~~~~~~~~~~~  202 (423)
                      .-+.+..       ...++..++-+..+|.+..-.+..... +....+........++.+-.++ .++++++...+....
T Consensus       204 ~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~  283 (504)
T PF10433_consen  204 SLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLL  283 (504)
T ss_dssp             S-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEE
T ss_pred             ceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEE
Confidence            1222222       355678888899999888776654331 1111121112345667766665 345555544443222


Q ss_pred             EEeecCCcceecccCCCcceeEEEEecC---CCe------eEEEEe---CCCeEEEEcCC-Cce-eeeeccccc--cCeE
Q psy13076        203 VFMSETGTSVGEISGQSKPINSCDFKPS---RPF------RIITGS---EDNTIAVFEGP-PFK-FKMTKQEHS--RFVQ  266 (423)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~------~~~s~s---~d~~i~~~~~~-~~~-~~~~~~~~~--~~i~  266 (423)
                      .+....-..+.. ...-.||..+.+-+.   +..      .+++++   .+|.+++..-- ... .........  ..+.
T Consensus       284 ~~~~~~l~~~~~-~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW  362 (504)
T PF10433_consen  284 QISLSNLEVLDS-LPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIW  362 (504)
T ss_dssp             EEESESEEEEEE-E----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEE
T ss_pred             EEeCCCcEEEEe-ccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEE
Confidence            222111111111 123356766666432   111      455554   46778877411 001 011111111  2223


Q ss_pred             EEEECC-CCCEEEEEEecCeEEEEECC---CccceecccccccC--CCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076        267 AVRYSP-SGSHFASAGFDGKVFLYDGA---SADLVSELGNPAHK--GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA  340 (423)
Q Consensus       267 ~l~~s~-~g~~l~s~s~dg~i~vwd~~---~~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~  340 (423)
                      .+.... +..|++....+ .-+++...   ..+.+.++...+-.  ...-.+..-. ++.++=.. ...|++.+....+.
T Consensus       363 ~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~~ivQVt-~~~i~l~~~~~~~~  439 (504)
T PF10433_consen  363 TLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DGRIVQVT-PKGIRLIDLEDGKL  439 (504)
T ss_dssp             EE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TTEEEEEE-SSEEEEEESSSTSE
T ss_pred             EeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CCeEEEEe-cCeEEEEECCCCeE
Confidence            333222 24566655544 44444442   22322221100111  1111122222 33333333 34588888777666


Q ss_pred             eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc----CCCceeEEEecC
Q psy13076        341 VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG----HNKPITALALSP  402 (423)
Q Consensus       341 i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----h~~~v~~i~~sp  402 (423)
                      ...+......  ....+..++..++.+..++.+.++.+............    ....|.|+..+|
T Consensus       440 ~~~w~~~~~~--~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  440 TQEWKPPAGS--IIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             EEEEE-TTS-----SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EEEEeCCCCC--eEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            5554332221  12233447778888888888888877654433222211    467788888776

...

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.42  E-value=1.7  Score=38.12  Aligned_cols=188  Identities=13%  Similarity=0.162  Sum_probs=102.9

Q ss_pred             eeEEEE---eCCEEEEEeccceEEEEeccC--CCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076          9 QVSCLW---QGDYLLTVSLSGFISYLDVNN--PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus         9 ~~~~~~---~~~~~~~~~~dg~i~~~d~~~--~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      ++.|.|   .+.+...+++...+++.+.+.  ..+|   +.|-++.|.++.|+|+.+.|++......-.||=...|.++.
T Consensus        45 ~f~~a~~k~~~~~~~~~~r~~~~~l~~y~~~i~akp---i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlir  121 (316)
T COG3204          45 VFPCAWFKAGQTNGLDLSRYIARYLLEYRARIDAKP---ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIR  121 (316)
T ss_pred             eeeeEEEeccccccccccchhhhccCCceEEEeccc---cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEE
Confidence            355665   355566666664444443321  1111   34555669999999999999999888998898777788877


Q ss_pred             cccCCCCCCceEEeeCCCCCeEEEec-CCeEEEEecCCC---------cccccccCC-cceEEEEEECCCCCEEEEEccC
Q psy13076         84 TLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP---------AISDIYTEH-SCAVNVAKYSPSGFYIASGDIS  152 (423)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~---------~~~~~~~~h-~~~i~~~~~sp~~~~l~s~~~d  152 (423)
                      +++-.....+=.+..-..|+..+... .+.+.+..++..         ++.---..+ +..--.++|.|..+.+..+-+.
T Consensus       122 tiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr  201 (316)
T COG3204         122 TIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER  201 (316)
T ss_pred             EecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc
Confidence            76543221111111112222222222 122332222211         111011122 4566789999988888888777


Q ss_pred             CcEEEEEcCCCceeEEeee-cCC-------CCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        153 GKVRIWDTVNKEHILKNEF-HPI-------GGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       153 ~~i~vwd~~~~~~~~~~~~-~~~-------~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                      .=++|+.+........... ...       -.-+.++.|++....+++.++....
T Consensus       202 ~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~  256 (316)
T COG3204         202 NPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRR  256 (316)
T ss_pred             CCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCce
Confidence            7788877653221110000 000       0235677888888888887765543

>KOG2079|consensus

Probab=95.37  E-value=0.083  Score=53.63  Aligned_cols=99  Identities=23%  Similarity=0.242  Sum_probs=66.2

Q ss_pred             CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEe
Q psy13076        273 SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVED  352 (423)
Q Consensus       273 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~  352 (423)
                      .+..++.|+..|.+..+|.... .-.-..+..-.++|++++|+.+|..++.|-.+|.|.+||...++.++.+....+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            4557888888899988886542 110112223467899999999999999999999999999999888776654332222


Q ss_pred             eEEEEEe--cCcEEEEEeCCCc
Q psy13076        353 QQVSCLW--QGDYLLTVSLSGF  372 (423)
Q Consensus       353 ~~~~~~~--~g~~l~~~~~~~~  372 (423)
                      ..+...+  ++..++++...|.
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc
Confidence            2222222  3344566666564

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.27  E-value=1.9  Score=37.82  Aligned_cols=144  Identities=18%  Similarity=0.159  Sum_probs=84.9

Q ss_pred             CeEEEEECCCCCEEEEEE--e-cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEe-cCCcc
Q psy13076        264 FVQAVRYSPSGSHFASAG--F-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD-IETKS  339 (423)
Q Consensus       264 ~i~~l~~s~~g~~l~s~s--~-dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd-~~~~~  339 (423)
                      .+.+.+++++|+.++...  . ...++++..  +.......   -...+....|++++...+....+...+++. ..++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~---~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL---TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec---cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            467899999999877665  2 234555543  33222221   123577889999988777766677777774 33332


Q ss_pred             eeee-eeeCcee-EeeEEEEEecCcEEEEEe---CCCcEEEEecC-CCC-------CceEEeccCCCceeEEEecCCCCe
Q psy13076        340 AVSE-FLMGNQV-EDQQVSCLWQGDYLLTVS---LSGFISYLDVN-NPS-------TPIRVIKGHNKPITALALSPDRGT  406 (423)
Q Consensus       340 ~i~~-~~~~~~~-~~~~~~~~~~g~~l~~~~---~~~~i~~~~~~-~~~-------~~~~~~~~h~~~v~~i~~sp~~~~  406 (423)
                      .... ....... ....+.++++|..++...   ..+.+.+--+. +..       .+..........+++++|.+++.+
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence            2211 1111111 455677788999987665   24566555432 111       122223344568999999999998


Q ss_pred             EEEecC
Q psy13076        407 VFTGSH  412 (423)
Q Consensus       407 l~s~s~  412 (423)
                      ++.+..
T Consensus       180 ~V~~~~  185 (253)
T PF10647_consen  180 VVLGRS  185 (253)
T ss_pred             EEEeCC
Confidence            775543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.98  E-value=0.75  Score=45.37  Aligned_cols=107  Identities=17%  Similarity=0.199  Sum_probs=70.9

Q ss_pred             EEECCCCCeEEEEeCCCcEEEEecCCcceeeee--eeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecC-----C---C
Q psy13076        312 VAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF--LMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN-----N---P  381 (423)
Q Consensus       312 l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~-----~---~  381 (423)
                      +.-+.-++.-+.-+.-.++.|||.+.+.+..+-  .....+.+..+...++|+.+++.+....|.++-..     +   .
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            334444554444445557999999887654332  22456677788888999999999999999887442     1   1


Q ss_pred             CCceEE--eccCC-CceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        382 STPIRV--IKGHN-KPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       382 ~~~~~~--~~~h~-~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      ..+++.  +..|+ .+|.+..|.++|..++.+|+  .+.++|
T Consensus       115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d  154 (631)
T PF12234_consen  115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD  154 (631)
T ss_pred             cceeEEEEeecCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence            223333  34565 68999999999988776653  344443

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2377|consensus

Probab=94.97  E-value=0.44  Score=44.04  Aligned_cols=103  Identities=15%  Similarity=0.302  Sum_probs=67.2

Q ss_pred             cCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEee-EEEEEecCcE-EEEEeCCCcEEEEecCCCC
Q psy13076        305 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ-QVSCLWQGDY-LLTVSLSGFISYLDVNNPS  382 (423)
Q Consensus       305 ~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~-~~~~~~~g~~-l~~~~~~~~i~~~~~~~~~  382 (423)
                      ..+.|.++.|++|++.|+.--.|++|.+++....+....+....+.+.. ...+.|.... ++..+ +..+.+|-+-.+.
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~pek  143 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLPEK  143 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEchhh
Confidence            4678999999999999999999999999998432221112112222222 2334454333 44444 4445555555555


Q ss_pred             CceEEeccCCCceeEEEecCCCCeEE
Q psy13076        383 TPIRVIKGHNKPITALALSPDRGTVF  408 (423)
Q Consensus       383 ~~~~~~~~h~~~v~~i~~sp~~~~l~  408 (423)
                      +.++-.+.|+..|+--.|+|+.+.++
T Consensus       144 rslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  144 RSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hhhhhhhhcccCccEEEEccccceEe
Confidence            55566778999999999999998643

>KOG4441|consensus

Probab=94.71  E-value=5  Score=39.84  Aligned_cols=145  Identities=17%  Similarity=0.225  Sum_probs=73.7

Q ss_pred             CCCEEEEEEecCe-----EEEEECCCccceecccccccCCCeEEEE-ECCCCCeEEEEeCCC------cEEEEecCCcce
Q psy13076        273 SGSHFASAGFDGK-----VFLYDGASADLVSELGNPAHKGGVYAVA-WKPDGTQLLTASGDK------TCKLWDIETKSA  340 (423)
Q Consensus       273 ~g~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~i~~l~-~~~~~~~l~s~s~d~------~i~iwd~~~~~~  340 (423)
                      +|...|.|+.||.     +..||..+.+-...-.   ......+.+ -.-+|...+.||.++      ++..||..+.+.
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W  456 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW  456 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCC---CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence            6778899999974     6677765543211110   111111111 123677778887554      467888877654


Q ss_pred             eeeeeeCceeEeeEEEEEecCcEEEEEeCCCc-----EEEEecCCCCCceEEeccCCCceeEEEec-CCCCeEEEecCCC
Q psy13076        341 VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGF-----ISYLDVNNPSTPIRVIKGHNKPITALALS-PDRGTVFTGSHDG  414 (423)
Q Consensus       341 i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~-----i~~~~~~~~~~~~~~~~~h~~~v~~i~~s-p~~~~l~s~s~D~  414 (423)
                      ...-.+........ .+..++...+.|+.++.     +..||..+..-..  +..-..+...+... -+++..+.||.|+
T Consensus       457 ~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~--v~~m~~~rs~~g~~~~~~~ly~vGG~~~  533 (571)
T KOG4441|consen  457 TLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTM--VAPMTSPRSAVGVVVLGGKLYAVGGFDG  533 (571)
T ss_pred             eecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeE--cccCccccccccEEEECCEEEEEecccC
Confidence            32222222211112 23346777778776652     6778776532211  11111111111111 2567778898886


Q ss_pred             -----cEEEeeCCC
Q psy13076        415 -----FITRWNAKT  423 (423)
Q Consensus       415 -----~i~~W~~~~  423 (423)
                           +|..||+.+
T Consensus       534 ~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  534 NNNLNTVECYDPET  547 (571)
T ss_pred             ccccceeEEcCCCC
Confidence                 455566543

>KOG4499|consensus

Probab=94.64  E-value=2.4  Score=35.86  Aligned_cols=211  Identities=15%  Similarity=0.111  Sum_probs=104.7

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCC---CeEEEecCCCceEEeec--CCcceeecccCCC-
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR---GTVFTGSHDGFITRWNA--KTEYIFATLPRTQ-   89 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~---~~l~sg~~D~~i~vW~~--~~~~~~~~~~~~~-   89 (423)
                      +.++..--..|.|+-||...+.--...+++  .++.++.+.-.+   .+.+.++..-.|--||.  +.-.+++++..-+ 
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            566666666777877887642211112333  235556654433   34455555555556883  4444555532110 


Q ss_pred             --CCCc-eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCc--------ceEEEEEECCCCCEEEEE-ccCCcEEE
Q psy13076         90 --RGQP-IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS--------CAVNVAKYSPSGFYIASG-DISGKVRI  157 (423)
Q Consensus        90 --~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~--------~~i~~~~~sp~~~~l~s~-~~d~~i~v  157 (423)
                        .... -=..-+|+|+.+.......--....-.+.+-..+.+|.        ..-+.++|+.+.+.+.-. +.+-+|.-
T Consensus       105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a  184 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA  184 (310)
T ss_pred             hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence              0000 00234788888765432211111111222222233333        223567888877777554 44567777


Q ss_pred             EE--cCCCce-----eEEeeec-CCC-CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEe
Q psy13076        158 WD--TVNKEH-----ILKNEFH-PIG-GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFK  228 (423)
Q Consensus       158 wd--~~~~~~-----~~~~~~~-~~~-~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  228 (423)
                      ||  ..++..     +...... +.. .....++...+|...+++-.+  .....++..+|+.+.+++.....+++|+|-
T Consensus       185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng--~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG--GTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC--cEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            88  333322     1111110 000 111234445556554444322  234556778899888888778889998886


Q ss_pred             cC
Q psy13076        229 PS  230 (423)
Q Consensus       229 ~~  230 (423)
                      ..
T Consensus       263 Gk  264 (310)
T KOG4499|consen  263 GK  264 (310)
T ss_pred             CC
Confidence            43

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.34  E-value=3.5  Score=36.49  Aligned_cols=210  Identities=13%  Similarity=0.185  Sum_probs=115.1

Q ss_pred             eEEEEEECCCCCEEEEEccCCcEEEEEcCC------CceeEEeeecC-----CCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        133 AVNVAKYSPSGFYIASGDISGKVRIWDTVN------KEHILKNEFHP-----IGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       133 ~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~------~~~~~~~~~~~-----~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                      .-+.++|+|.+.+-++....+...+||...      ...+ ......     .....+-+.|+....+.+..........
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L-~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPL-VVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccce-EEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            357889999988888888889999999861      1111 111111     1234566777765443222211111112


Q ss_pred             EEEeecCCcce-------------e--ccc-C-CCcceeEEEEecC--CCeeEEEEeCCCeEEEEcCCCceeee------
Q psy13076        202 HVFMSETGTSV-------------G--EIS-G-QSKPINSCDFKPS--RPFRIITGSEDNTIAVFEGPPFKFKM------  256 (423)
Q Consensus       202 ~~~~~~~~~~~-------------~--~~~-~-~~~~i~~~~~~~~--~~~~~~s~s~d~~i~~~~~~~~~~~~------  256 (423)
                      .++..+.+...             .  .+. . ....-..+++...  +.++-++--.+++|.+||..=.+...      
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D  182 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID  182 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence            23333333211             0  010 0 1112233444432  44544555678889999743111110      


Q ss_pred             ------------eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECC------CC
Q psy13076        257 ------------TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP------DG  318 (423)
Q Consensus       257 ------------~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~------~~  318 (423)
                                  +.....-+|+...-.++++.=+.|.--|.|-+||. .+..++++...+.-...+.|+..|      .|
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg  261 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSG  261 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence                        00111223444444555544455555678999996 466666664444445568888866      57


Q ss_pred             CeEEEEeCCCcEEEEecCCcceeeee
Q psy13076        319 TQLLTASGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       319 ~~l~s~s~d~~i~iwd~~~~~~i~~~  344 (423)
                      .+|+-.-.||+|..||..+++.+..+
T Consensus       262 ~lLVGNFGDG~InaFD~~sG~~~g~L  287 (336)
T TIGR03118       262 ALLVGNFGDGTINAYDPQSGAQLGQL  287 (336)
T ss_pred             CeEEeecCCceeEEecCCCCceeeee
Confidence            88888888999999999988765544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.27  E-value=3.5  Score=36.16  Aligned_cols=113  Identities=17%  Similarity=0.277  Sum_probs=61.6

Q ss_pred             EEEEEECCCCCEEEEEccCCcEEEEE-cCCCcee-EEeeecCCCCCeeEEEECCCCCeEEEEEcCCc---ee-eEEEeec
Q psy13076        134 VNVAKYSPSGFYIASGDISGKVRIWD-TVNKEHI-LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE---RF-GHVFMSE  207 (423)
Q Consensus       134 i~~~~~sp~~~~l~s~~~d~~i~vwd-~~~~~~~-~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~---~~-~~~~~~~  207 (423)
                      +..-.|++++...+....+...+++. ....... ..........+|.++++||||..++++.....   .+ ..+....
T Consensus        68 l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~  147 (253)
T PF10647_consen   68 LTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG  147 (253)
T ss_pred             cccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence            33445777777666666666666664 2222211 11111111227999999999999988873221   11 1111122


Q ss_pred             CC--cce----ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076        208 TG--TSV----GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV  246 (423)
Q Consensus       208 ~~--~~~----~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~  246 (423)
                      .+  ..+    .........+..++|.++..+.+++...+.....
T Consensus       148 ~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  148 DGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             CCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence            23  111    1122334678899999998876666555554333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.21  E-value=4  Score=36.66  Aligned_cols=268  Identities=11%  Similarity=0.046  Sum_probs=110.2

Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCC----CCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG----GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      ..+..+.|..+..-++.|. .+.|  +...++-..+........    -...+|.|..+  ...+++...   ..+...+
T Consensus        17 ~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG~~g---~ll~T~D   88 (302)
T PF14870_consen   17 KPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVGEPG---LLLHTTD   88 (302)
T ss_dssp             S-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEEETT---EEEEESS
T ss_pred             CceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEcCCc---eEEEecC
Confidence            4677888885555566554 4543  333332211111111111    23567777643  333444332   1233344


Q ss_pred             CCcceecccCC---CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC
Q psy13076        208 TGTSVGEISGQ---SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG  284 (423)
Q Consensus       208 ~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg  284 (423)
                      .+.....+...   ......+.....+.  ....+..+.|+.-......-..........+..+..+++|+++++++...
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~--~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~  166 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDGS--AELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN  166 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETTE--EEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCCc--EEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence            45555444311   11222222222322  22233445444432211111222233445678888899999999887777


Q ss_pred             eEEEEECCCcc-ceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee----C--ceeEeeEEEE
Q psy13076        285 KVFLYDGASAD-LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM----G--NQVEDQQVSC  357 (423)
Q Consensus       285 ~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~----~--~~~~~~~~~~  357 (423)
                      ...-||.-... .....   .....|..|.|.|++.+.+.+ ..+.|++=+...  ...++..    .  .......+..
T Consensus       167 ~~~s~~~G~~~w~~~~r---~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~~~~~~~~~~~~ld~a~  240 (302)
T PF14870_consen  167 FYSSWDPGQTTWQPHNR---NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEPIIPIKTNGYGILDLAY  240 (302)
T ss_dssp             EEEEE-TT-SS-EEEE-----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---B-TTSS--S-EEEEEE
T ss_pred             EEEEecCCCccceEEcc---CccceehhceecCCCCEEEEe-CCcEEEEccCCC--CccccccccCCcccCceeeEEEEe
Confidence            77788753221 11111   235679999999998876654 778888766211  1122211    0  0111222333


Q ss_pred             EecCcEEEEEeCCCcEEEEecCCCC-CceEEec--cCCCceeEEEecCCCCeEEEecCCCcEEEe
Q psy13076        358 LWQGDYLLTVSLSGFISYLDVNNPS-TPIRVIK--GHNKPITALALSPDRGTVFTGSHDGFITRW  419 (423)
Q Consensus       358 ~~~g~~l~~~~~~~~i~~~~~~~~~-~~~~~~~--~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W  419 (423)
                      .++++..+ +..+|.+.+  ..+.. ...+...  .-..-...|.|.++++-++ -|+||.+--|
T Consensus       241 ~~~~~~wa-~gg~G~l~~--S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  241 RPPNEIWA-VGGSGTLLV--STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             SSSS-EEE-EESTT-EEE--ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred             cCCCCEEE-EeCCccEEE--eCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence            33444444 444554433  22222 2222222  2234588899976655554 4667777555

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.02  E-value=4  Score=35.90  Aligned_cols=160  Identities=10%  Similarity=0.153  Sum_probs=92.3

Q ss_pred             CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCC-CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc
Q psy13076        174 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ-SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF  252 (423)
Q Consensus       174 ~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~  252 (423)
                      ....+.++.|+|+.+.|+++.+....  .+.....|..++.++-. .+....+.+...+.+ .++-=.++.+.++.....
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~--iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f-vi~dER~~~l~~~~vd~~  160 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAA--IVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF-VIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCce--EEEEecCCceEEEecccccCChhHeEEecCCEE-EEEehhcceEEEEEEcCC
Confidence            34558899999999999998766543  34445566666665422 234456667666655 344445666666632211


Q ss_pred             ---------eeeeecccc-ccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceec--ccc------cccCCCeEEEEE
Q psy13076        253 ---------KFKMTKQEH-SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE--LGN------PAHKGGVYAVAW  314 (423)
Q Consensus       253 ---------~~~~~~~~~-~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~--~~~------~~~~~~i~~l~~  314 (423)
                               ++.+....+ +...-.++|+|..+.|..+=.-.-+.||........-.  ...      .-.-..+.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence                     222222222 34456899999999888887777777776543321101  000      001234678888


Q ss_pred             CCCC-CeEEEEeCCCcEEEEecC
Q psy13076        315 KPDG-TQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       315 ~~~~-~~l~s~s~d~~i~iwd~~  336 (423)
                      ++.. .+|+-+-.++.+.-.|..
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecC
Confidence            8754 455555556666555554

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.94  E-value=5.7  Score=37.47  Aligned_cols=275  Identities=16%  Similarity=0.233  Sum_probs=125.9

Q ss_pred             ccceeeEEEE-e-----CCEEEEEeccceEEEEeccCCC-Cceee-ccc-ccCceeEEEEeC----CCCeEEEecCCCce
Q psy13076          5 VEDQQVSCLW-Q-----GDYLLTVSLSGFISYLDVNNPS-TPIRV-IKG-HNKPITALALSP----DRGTVFTGSHDGFI   71 (423)
Q Consensus         5 ~~~~~~~~~~-~-----~~~~~~~~~dg~i~~~d~~~~~-~~~~~-~~g-h~~~V~~l~~~~----~~~~l~sg~~D~~i   71 (423)
                      .+..+++|-. |     .+.|+.||..|.+|+++..... ++-.. ++- =+.||..+...+    .+...++-=.-+++
T Consensus        20 ~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl   99 (418)
T PF14727_consen   20 FDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKL   99 (418)
T ss_pred             CcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEE
Confidence            3445666664 3     4689999999999999985422 22222 222 357888887754    12222222344556


Q ss_pred             EEeecCCc--c--------eeecccCC--CCCCceEEe--eCCCCCeEEE--ecCCeEEEEecCCCcccccccCCcceEE
Q psy13076         72 TRWNAKTE--Y--------IFATLPRT--QRGQPIVLG--GDPKGKNFLY--TNGNSVIIRNIENPAISDIYTEHSCAVN  135 (423)
Q Consensus        72 ~vW~~~~~--~--------~~~~~~~~--~~~~~~~~~--~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~h~~~i~  135 (423)
                      -|+.+...  .        +.....+.  ........+  +...+..+++  +.+..+.+.+-+.-.....+.+ .--..
T Consensus       100 ~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPg  178 (418)
T PF14727_consen  100 SVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPG  178 (418)
T ss_pred             EEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCc
Confidence            66655211  0        00000000  001111111  1122233333  3344444444333222222222 11122


Q ss_pred             EEEECCCCCEEEEEccCCcEEEEEcCC---------------------CceeEEeeecCCCCCeeE---EEECCCCCeEE
Q psy13076        136 VAKYSPSGFYIASGDISGKVRIWDTVN---------------------KEHILKNEFHPIGGPIKD---IAWSPDNQRMV  191 (423)
Q Consensus       136 ~~~~sp~~~~l~s~~~d~~i~vwd~~~---------------------~~~~~~~~~~~~~~~v~~---v~~s~~~~~~~  191 (423)
                      -+.|.|.-..+++++.+..+.-|....                     ++....+.+ ..+.++.+   +.++.....++
T Consensus       179 Pl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~-nlGE~~l~i~v~~~~~~~~~Iv  257 (418)
T PF14727_consen  179 PLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSF-NLGEQALDIQVVRFSSSESDIV  257 (418)
T ss_pred             CeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEE-ECCceeEEEEEEEcCCCCceEE
Confidence            356778778888888888888886421                     000011111 12333433   33443444455


Q ss_pred             EEEcCCceeeEEEe-ecCCcceecccC-CCcceeEEEEec------CCCeeEEEEeCCCeEEEEcCCCceeeeecccccc
Q psy13076        192 VVGEGRERFGHVFM-SETGTSVGEISG-QSKPINSCDFKP------SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR  263 (423)
Q Consensus       192 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~i~~~~~~~------~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~  263 (423)
                      +.+..     +++. .+.| .+...+. .-.+...+.|..      +....++.++.++++.+|....  +.+.......
T Consensus       258 vLger-----~Lf~l~~~G-~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~  329 (418)
T PF14727_consen  258 VLGER-----SLFCLKDNG-SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHV  329 (418)
T ss_pred             EEecc-----eEEEEcCCC-eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCC
Confidence            44422     1222 2233 3332222 222333333332      2233578889999999997543  3332222222


Q ss_pred             C--eEEEEECCCCCEEEEEEecCeEEEE
Q psy13076        264 F--VQAVRYSPSGSHFASAGFDGKVFLY  289 (423)
Q Consensus       264 ~--i~~l~~s~~g~~l~s~s~dg~i~vw  289 (423)
                      +  +....|..-..++++-+.+|.+.+-
T Consensus       330 PVal~v~~~~~~~G~IV~Ls~~G~L~v~  357 (418)
T PF14727_consen  330 PVALSVANFNGLKGLIVSLSDEGQLSVS  357 (418)
T ss_pred             CEEEEecccCCCCceEEEEcCCCcEEEE
Confidence            2  2223333334467777777777653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.73  E-value=0.51  Score=40.24  Aligned_cols=72  Identities=17%  Similarity=0.253  Sum_probs=48.3

Q ss_pred             ccceeeEEEEeCCEEEEEeccceEEEEeccCCCCceee------cc-------cccCceeEEEEeCCCCeEEEecCCCce
Q psy13076          5 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRV------IK-------GHNKPITALALSPDRGTVFTGSHDGFI   71 (423)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~------~~-------gh~~~V~~l~~~~~~~~l~sg~~D~~i   71 (423)
                      +....+-+.-+++||++...+|.+++||+.+..-.+..      +.       .....|..+.++.+|.-+++=+ +|..
T Consensus        11 Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~   89 (219)
T PF07569_consen   11 LGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS   89 (219)
T ss_pred             cCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence            34455556668999999999999999999763322211      22       3456677777777776666554 3566


Q ss_pred             EEeecC
Q psy13076         72 TRWNAK   77 (423)
Q Consensus        72 ~vW~~~   77 (423)
                      ..|+.+
T Consensus        90 y~y~~~   95 (219)
T PF07569_consen   90 YSYSPD   95 (219)
T ss_pred             EEeccc
Confidence            777654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.46  E-value=4.9  Score=35.15  Aligned_cols=149  Identities=18%  Similarity=0.195  Sum_probs=82.3

Q ss_pred             CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCc--ceeEEEEecCCCeeEEEEe----CCCeEEEEcC
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK--PINSCDFKPSRPFRIITGS----EDNTIAVFEG  249 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~s~s----~d~~i~~~~~  249 (423)
                      .....++|+|..+.-+...--...+..+++.+.......+.....  -.-.=.|+|++.++-+|-+    ..|.|-+||.
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence            345567778776655555544455555666655543332221111  1112358888886444432    2467899986


Q ss_pred             CC-ceeeeeccccccCeEEEEECCCCCEEEEEEec------------------CeEEEEECCCccceeccccc--ccCCC
Q psy13076        250 PP-FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD------------------GKVFLYDGASADLVSELGNP--AHKGG  308 (423)
Q Consensus       250 ~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d------------------g~i~vwd~~~~~~~~~~~~~--~~~~~  308 (423)
                      .. +...-.+..|.-..-.+.+.+||+.++.+...                  -.+.+.|..+++++.+...+  .+...
T Consensus       148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS  227 (366)
T COG3490         148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS  227 (366)
T ss_pred             ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence            52 22222333333334467888999988776421                  12233444566655443333  45567


Q ss_pred             eEEEEECCCCCeEEEE
Q psy13076        309 VYAVAWKPDGTQLLTA  324 (423)
Q Consensus       309 i~~l~~~~~~~~l~s~  324 (423)
                      |..++..+||+.++.+
T Consensus       228 iRHld~g~dgtvwfgc  243 (366)
T COG3490         228 IRHLDIGRDGTVWFGC  243 (366)
T ss_pred             eeeeeeCCCCcEEEEE
Confidence            8888888888766554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.27  E-value=0.3  Score=29.06  Aligned_cols=30  Identities=17%  Similarity=0.334  Sum_probs=25.2

Q ss_pred             CceeEEEecCCCC---eEEEecCCCcEEEeeCC
Q psy13076        393 KPITALALSPDRG---TVFTGSHDGFITRWNAK  422 (423)
Q Consensus       393 ~~v~~i~~sp~~~---~l~s~s~D~~i~~W~~~  422 (423)
                      +.|+++.|||+..   +|+-+-.-+.|.++|+.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            4689999998655   78888888999999986

It contains a characteristic DLL sequence motif.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.09  E-value=3.5  Score=38.48  Aligned_cols=143  Identities=13%  Similarity=0.118  Sum_probs=70.7

Q ss_pred             eEEEEECCCCCEEEEEE-----------ecC-eEEEEECCC--ccc--eecccccccCCCeEEEEECCCCCeEEEEeCCC
Q psy13076        265 VQAVRYSPSGSHFASAG-----------FDG-KVFLYDGAS--ADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       265 i~~l~~s~~g~~l~s~s-----------~dg-~i~vwd~~~--~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                      ...++|.++|+++++-.           ..+ .|.+++-..  ++.  ...+..  ......++++.++| .+++ ....
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--~l~~p~Gi~~~~~G-lyV~-~~~~   91 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--ELSMVTGLAVAVGG-VYVA-TPPD   91 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--CCCCccceeEecCC-EEEe-CCCe
Confidence            45688888888776642           223 777776432  221  122211  12345789999998 5544 4444


Q ss_pred             cEEEEecCCc-------cee-eeeeeC---ceeEeeEEEEEecCcEEEEEeC-------------------CCcEEEEec
Q psy13076        329 TCKLWDIETK-------SAV-SEFLMG---NQVEDQQVSCLWQGDYLLTVSL-------------------SGFISYLDV  378 (423)
Q Consensus       329 ~i~iwd~~~~-------~~i-~~~~~~---~~~~~~~~~~~~~g~~l~~~~~-------------------~~~i~~~~~  378 (423)
                      ..++.|....       +.+ ..+...   .......+..-++|...++...                   .+.+..++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3444454321       111 112111   0111223444456655443331                   133444544


Q ss_pred             CCCCCceEEeccCCCceeEEEecCCCCeEEEecCC
Q psy13076        379 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD  413 (423)
Q Consensus       379 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D  413 (423)
                      ....  +..+..--...+.++|+|+++++++-..+
T Consensus       172 dg~~--~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       172 DGGK--LRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCCe--EEEEecCcCCCccceECCCCCEEEEccCC
Confidence            3322  23332223446789999999888765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.09  E-value=3.7  Score=38.29  Aligned_cols=99  Identities=12%  Similarity=0.082  Sum_probs=50.1

Q ss_pred             eeEEEEeCCEEEEEe-----------ccc-eEEEEeccCC-CC--ceeecccccCceeEEEEeCCCCeEEEecCCCceEE
Q psy13076          9 QVSCLWQGDYLLTVS-----------LSG-FISYLDVNNP-ST--PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR   73 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~-----------~dg-~i~~~d~~~~-~~--~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~v   73 (423)
                      ++++..+|++.++-.           ..+ .|.+++-.+. .+  ...+|-..-...+.+++.+++ ++++ +.+...++
T Consensus        18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i~~~   95 (367)
T TIGR02604        18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDILFL   95 (367)
T ss_pred             eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeEEEE
Confidence            344455788777643           233 7878864322 22  233444334456789999988 5554 44443334


Q ss_pred             eecCC-------c-ceeecccCCC---CCCceEEeeCCCCCeEEEec
Q psy13076         74 WNAKT-------E-YIFATLPRTQ---RGQPIVLGGDPKGKNFLYTN  109 (423)
Q Consensus        74 W~~~~-------~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  109 (423)
                      .+.+.       . .++..+....   ....-.+.+.|+|.+++...
T Consensus        96 ~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        96 RDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             eCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            45432       1 1222232210   12222456678888776543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1916|consensus

Probab=93.04  E-value=0.2  Score=50.14  Aligned_cols=68  Identities=21%  Similarity=0.241  Sum_probs=47.8

Q ss_pred             ccceeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEE-----------eCCCCeEEEecCCCceEE
Q psy13076          5 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALAL-----------SPDRGTVFTGSHDGFITR   73 (423)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~-----------~~~~~~l~sg~~D~~i~v   73 (423)
                      |+--+++|..  -++-.+-.+|.|+++.++.  .....+++|...++.++|           ||||..++..+.||.++.
T Consensus       186 V~wcp~~~~~--~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f  261 (1283)
T KOG1916|consen  186 VSWCPIAVNK--VYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF  261 (1283)
T ss_pred             eeeccccccc--ceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence            3334444444  5666677889999998863  334678889877776654           778888888888888887


Q ss_pred             eec
Q psy13076         74 WNA   76 (423)
Q Consensus        74 W~~   76 (423)
                      |-.
T Consensus       262 ~Qi  264 (1283)
T KOG1916|consen  262 YQI  264 (1283)
T ss_pred             eee
Confidence            754

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.76  E-value=0.46  Score=28.26  Aligned_cols=31  Identities=19%  Similarity=0.287  Sum_probs=26.0

Q ss_pred             CCeEEEEECCCC---CeEEEEeCCCcEEEEecCC
Q psy13076        307 GGVYAVAWKPDG---TQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       307 ~~i~~l~~~~~~---~~l~s~s~d~~i~iwd~~~  337 (423)
                      +.+.++.|+|++   .+|+-+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999854   4888888889999999985

It contains a characteristic DLL sequence motif.

>KOG3630|consensus

Probab=92.67  E-value=0.99  Score=46.66  Aligned_cols=101  Identities=19%  Similarity=0.254  Sum_probs=67.0

Q ss_pred             eeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc
Q psy13076        222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG  301 (423)
Q Consensus       222 i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~  301 (423)
                      ..++.|+|.-+...+.+..|+.|++............-......++++|+|.|+.++.|-..|++.-|... .+....+.
T Consensus       158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip  236 (1405)
T KOG3630|consen  158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIP  236 (1405)
T ss_pred             cccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeeccc
Confidence            44677888776667888889988887644322221111233457899999999999999999999887642 22222222


Q ss_pred             cc--ccCCCeEEEEECCCCCeEEE
Q psy13076        302 NP--AHKGGVYAVAWKPDGTQLLT  323 (423)
Q Consensus       302 ~~--~~~~~i~~l~~~~~~~~l~s  323 (423)
                      .+  .....|.+|.|-....+|++
T Consensus       237 ~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  237 EPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             CCCcCCCcceeEEEEecceeEEEE
Confidence            11  12467899999877777765

>KOG2377|consensus

Probab=92.66  E-value=2.7  Score=39.16  Aligned_cols=108  Identities=11%  Similarity=0.197  Sum_probs=66.8

Q ss_pred             cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeE--EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEe
Q psy13076        128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL--KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM  205 (423)
Q Consensus       128 ~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~  205 (423)
                      .-..++|.+++|+||++.+|.--.+++|.+.+....+..+  ..+.......|....|+.+ ..++.+.+..-   .++.
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~---e~y~  138 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGI---EFYQ  138 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCe---EEEE
Confidence            3455799999999999999999999999999873322111  1111112234777778766 34444433321   1222


Q ss_pred             ec-CCcceecccCCCcceeEEEEecCCCeeEEEEe
Q psy13076        206 SE-TGTSVGEISGQSKPINSCDFKPSRPFRIITGS  239 (423)
Q Consensus       206 ~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s  239 (423)
                      .. ....++.++.++-.|+-..|.+.....+++.+
T Consensus       139 v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  139 VLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             EchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            21 23445566677777888888887776665555

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.61  E-value=8.2  Score=35.41  Aligned_cols=58  Identities=22%  Similarity=0.298  Sum_probs=35.6

Q ss_pred             cCcEEEEEeCCCcEEEEecCCCCCceE---EeccCCCceeEEEecCCCCeEEEecCCCcEE
Q psy13076        360 QGDYLLTVSLSGFISYLDVNNPSTPIR---VIKGHNKPITALALSPDRGTVFTGSHDGFIT  417 (423)
Q Consensus       360 ~g~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~  417 (423)
                      .|.++++.-..+.|....+........   .+......+.++++.|||.++++...+|.|.
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            555555555555666655543222111   1234555899999999999999888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.54  E-value=3.1  Score=42.28  Aligned_cols=74  Identities=24%  Similarity=0.362  Sum_probs=50.3

Q ss_pred             CeEEEEECCCCCEEEEEEecCeEEEEECCC----------ccc--e-ecc------cccccCCCeEEEEECCC---CCeE
Q psy13076        264 FVQAVRYSPSGSHFASAGFDGKVFLYDGAS----------ADL--V-SEL------GNPAHKGGVYAVAWKPD---GTQL  321 (423)
Q Consensus       264 ~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~----------~~~--~-~~~------~~~~~~~~i~~l~~~~~---~~~l  321 (423)
                      .|..+.++|+|++++..|..|-..+ .+..          ++.  . ...      -...+...|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            3778999999999988887664333 2211          111  0 000      01123457889999996   5889


Q ss_pred             EEEeCCCcEEEEecCCc
Q psy13076        322 LTASGDKTCKLWDIETK  338 (423)
Q Consensus       322 ~s~s~d~~i~iwd~~~~  338 (423)
                      +.-..|+++|+||+...
T Consensus       165 ~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEecCCEEEEEecCCC
Confidence            99999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.53  E-value=11  Score=36.65  Aligned_cols=120  Identities=15%  Similarity=0.214  Sum_probs=66.8

Q ss_pred             ccccCceeEEEEeCC----CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076         44 KGHNKPITALALSPD----RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE  119 (423)
Q Consensus        44 ~gh~~~V~~l~~~~~----~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  119 (423)
                      -|..+-|..++|+|-    .+-|++......|.||-+......                  .++.++.   +.       
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e------------------~~K~l~s---Qt-------  104 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTE------------------RNKLLMS---QT-------  104 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccc------------------cccceee---ee-------
Confidence            456678999999984    456777778899999987521100                  0011110   00       


Q ss_pred             CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                       .++...|.-.   -...-|+|....++.-.....-.++++.......+.+. ...+.|.+.+|.+||..++++-++
T Consensus       105 -cEi~e~~pvL---pQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGS  176 (671)
T PF15390_consen  105 -CEIREPFPVL---PQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGS  176 (671)
T ss_pred             -eeccCCcccC---CCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCC
Confidence             0000011100   01234788777776655444444555543332222333 234779999999999998887544

>PRK13684 Ycf48-like protein; Provisional

Probab=92.41  E-value=8.7  Score=35.27  Aligned_cols=152  Identities=12%  Similarity=0.150  Sum_probs=76.3

Q ss_pred             ccCeEEEEECCCCCEEEEEEecCeEEE-EECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076        262 SRFVQAVRYSPSGSHFASAGFDGKVFL-YDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA  340 (423)
Q Consensus       262 ~~~i~~l~~s~~g~~l~s~s~dg~i~v-wd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~  340 (423)
                      ...+..+.+.|++.+++++. .|.+.. ++- .++....+.. .-...+.++.+.|+++.++.+ ..|.+++=....+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeC-CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            34578889999987776554 454442 221 1122222221 234567899999999877664 567665322222221


Q ss_pred             eeeeeeC---ceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEe---ccCCCceeEEEecCCCCeEEEecCCC
Q psy13076        341 VSEFLMG---NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI---KGHNKPITALALSPDRGTVFTGSHDG  414 (423)
Q Consensus       341 i~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~h~~~v~~i~~sp~~~~l~s~s~D~  414 (423)
                      -......   .......+.+.+++..+ .+..+|.+..-  .+....-...   .+-....+.+.|..+++.++ +|..|
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~~S--~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G  323 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLLVS--KDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRG  323 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEE-EEcCCCeEEEe--CCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCc
Confidence            1111100   01112223344455544 44456655442  2221111111   12234588888887776665 56678


Q ss_pred             cEEEeeC
Q psy13076        415 FITRWNA  421 (423)
Q Consensus       415 ~i~~W~~  421 (423)
                      .|--|+.
T Consensus       324 ~il~~~~  330 (334)
T PRK13684        324 VLLRYVG  330 (334)
T ss_pred             eEEEecC
Confidence            8877764

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.12  E-value=4.7  Score=41.00  Aligned_cols=91  Identities=13%  Similarity=0.224  Sum_probs=53.6

Q ss_pred             CCeEEEEECCCCCeEEEEeCCCcEEEEecCC-cceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCce
Q psy13076        307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIET-KSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI  385 (423)
Q Consensus       307 ~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~-~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~  385 (423)
                      -.|..+.++|+|++|+..|..+ |.|-.+.. ...-..+..+..    .+.|                +-+.+..  . +
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~----~i~C----------------rt~~v~~--~-~  140 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKK----EINC----------------RTVPVDE--R-F  140 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCc----ceeE----------------EEEEech--h-h
Confidence            3588899999999999988866 44444432 111111211111    0111                0011100  0 0


Q ss_pred             EEeccCCCceeEEEecCC---CCeEEEecCCCcEEEeeCC
Q psy13076        386 RVIKGHNKPITALALSPD---RGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       386 ~~~~~h~~~v~~i~~sp~---~~~l~s~s~D~~i~~W~~~  422 (423)
                       ....+...|..+.|+|.   +..|+.=..|+++|+||+.
T Consensus       141 -~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  141 -FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDIS  179 (717)
T ss_pred             -ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecC
Confidence             11244567999999997   5788888899999999974

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4499|consensus

Probab=91.90  E-value=7.2  Score=33.15  Aligned_cols=49  Identities=12%  Similarity=0.212  Sum_probs=38.3

Q ss_pred             EEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076        267 AVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD  317 (423)
Q Consensus       267 ~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~  317 (423)
                      .++...+|.+.++.=..++|...|..+|+.+.++..+  ...|++++|-..
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGk  264 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGK  264 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCC
Confidence            3455667887777777889999999999999888654  677899999643

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.80  E-value=1.1  Score=44.51  Aligned_cols=75  Identities=23%  Similarity=0.258  Sum_probs=44.9

Q ss_pred             CCCCEEEEEEecCeEEEEECCC----ccceeccccc--------------------ccCCCeEEEEECC----CCCeEEE
Q psy13076        272 PSGSHFASAGFDGKVFLYDGAS----ADLVSELGNP--------------------AHKGGVYAVAWKP----DGTQLLT  323 (423)
Q Consensus       272 ~~g~~l~s~s~dg~i~vwd~~~----~~~~~~~~~~--------------------~~~~~i~~l~~~~----~~~~l~s  323 (423)
                      ++...++.+..||.+.......    +.........                    ........+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4556777778888887776543    2111111000                    0123345666766    6789999


Q ss_pred             EeCCCcEEEEecCCcceeeeeee
Q psy13076        324 ASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       324 ~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      .+.|+++|+||+.+++++.+...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEET
T ss_pred             EeCCCeEEEEECCCCeEEEEecc
Confidence            99999999999999999776543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.72  E-value=5.8  Score=39.36  Aligned_cols=70  Identities=16%  Similarity=0.190  Sum_probs=49.0

Q ss_pred             eEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEEC--CCCCeEEEEeCCCcEEEEec
Q psy13076        265 VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK--PDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       265 i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~l~s~s~d~~i~iwd~  335 (423)
                      ++-+.-|.-++..++-+....+.|||.+.+....+... ...+.|.++.|.  |+|+.+++.|-...|.++.-
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            34444455555555544455789999998875544332 246779999984  68999999999999999853

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=91.52  E-value=12  Score=34.77  Aligned_cols=275  Identities=13%  Similarity=0.146  Sum_probs=116.6

Q ss_pred             EEeCCCC-eEEEecCCCceEEe--ecCCcceeecccCCCCCCceEEeeCCCCCeEEE-ecCCeEEEEecCCCcccccccC
Q psy13076         54 ALSPDRG-TVFTGSHDGFITRW--NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLY-TNGNSVIIRNIENPAISDIYTE  129 (423)
Q Consensus        54 ~~~~~~~-~l~sg~~D~~i~vW--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~  129 (423)
                      .|.++|+ +|+++..||.=.+|  |++++++............. ...+++.+.+++ .++..+..-++++.+...++.-
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g-~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFG-GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT--EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccc-eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            4567775 56666666665554  78888765544322111111 122355566554 5677888888888887777766


Q ss_pred             CcceEEEEEE--CCCCCEEEEEcc---C-------------------CcEEEEEcCCCceeEEeeecCCCCCeeEEEECC
Q psy13076        130 HSCAVNVAKY--SPSGFYIASGDI---S-------------------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP  185 (423)
Q Consensus       130 h~~~i~~~~~--sp~~~~l~s~~~---d-------------------~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~  185 (423)
                      ...-+-...|  +.|+..++-.-.   |                   ..|.--|+.+++...   ......-+.-+.|+|
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~---v~~~~~wlgH~~fsP  197 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV---VFEDTDWLGHVQFSP  197 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE---EEEESS-EEEEEEET
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE---EEecCccccCcccCC
Confidence            6554444444  345555543211   1                   112222333332111   111223456788999


Q ss_pred             CCCeEEEEEcCC--cee-eEEEeecC-CcceecccCC--CcceeEEEEecCCCeeEEEEe-C---CCeEEEEcCCCceee
Q psy13076        186 DNQRMVVVGEGR--ERF-GHVFMSET-GTSVGEISGQ--SKPINSCDFKPSRPFRIITGS-E---DNTIAVFEGPPFKFK  255 (423)
Q Consensus       186 ~~~~~~~~~~~~--~~~-~~~~~~~~-~~~~~~~~~~--~~~i~~~~~~~~~~~~~~s~s-~---d~~i~~~~~~~~~~~  255 (423)
                      ....+++.+...  ... .++|..++ +.....+..+  ...+..=-|.|++..+..-+. .   +..|.-++..+....
T Consensus       198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~  277 (386)
T PF14583_consen  198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR  277 (386)
T ss_dssp             TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred             CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence            887777766432  222 24555443 3333333322  222333456777765444322 1   223444444433322


Q ss_pred             eeccccccCeEEEEECCCCCEEEEEEecC----------------eEEEEECCCccceeccc-------ccccCC-CeEE
Q psy13076        256 MTKQEHSRFVQAVRYSPSGSHFASAGFDG----------------KVFLYDGASADLVSELG-------NPAHKG-GVYA  311 (423)
Q Consensus       256 ~~~~~~~~~i~~l~~s~~g~~l~s~s~dg----------------~i~vwd~~~~~~~~~~~-------~~~~~~-~i~~  311 (423)
                      ..  ....+-..+-.++||++++.=+.|.                .|++++.+.+....-..       ..++.. .=..
T Consensus       278 ~~--~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPh  355 (386)
T PF14583_consen  278 RL--MEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPH  355 (386)
T ss_dssp             EE--EEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT---
T ss_pred             EE--EeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCC
Confidence            11  1122344566689998887644442                45677777655321100       011111 0136


Q ss_pred             EEECCCCCeEEE-EeCCCcEEEEe
Q psy13076        312 VAWKPDGTQLLT-ASGDKTCKLWD  334 (423)
Q Consensus       312 l~~~~~~~~l~s-~s~d~~i~iwd  334 (423)
                      ..|+|||++++- +...|...||=
T Consensus       356 p~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  356 PSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             -EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             CccCCCCCEEEEECCCCCCccEEE
Confidence            899999987654 44567666653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.84  E-value=1.7  Score=37.01  Aligned_cols=63  Identities=19%  Similarity=0.310  Sum_probs=47.6

Q ss_pred             EecCcEEEEEeCCCcEEEEecCCCCCceEE------ec-------cCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        358 LWQGDYLLTVSLSGFISYLDVNNPSTPIRV------IK-------GHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       358 ~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~------~~-------~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      ..++.++++.+.+|.+++||+.+....+..      +.       .....|..+.++.+|.-|++-++ |..+.|+.
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~   94 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSP   94 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecc
Confidence            348999999999999999999875432221      22       35677999999988887877664 67788875

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA03098 kelch-like protein; Provisional

Probab=90.69  E-value=18  Score=35.65  Aligned_cols=144  Identities=10%  Similarity=0.070  Sum_probs=66.1

Q ss_pred             CCCEEEEEEecC-----eEEEEECCCccce--ecccccccCCCeEEEEECCCCCeEEEEeCC------CcEEEEecCCcc
Q psy13076        273 SGSHFASAGFDG-----KVFLYDGASADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASGD------KTCKLWDIETKS  339 (423)
Q Consensus       273 ~g~~l~s~s~dg-----~i~vwd~~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d------~~i~iwd~~~~~  339 (423)
                      +++.++.|+.++     .+..||..+.+-.  ..+..+  ... .+++. -+++..+.||.+      ..+..||+.+.+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~--r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP--RYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC--Ccc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            566777777652     4667776654321  111111  111 12222 356666777632      357888887653


Q ss_pred             eeeeeeeCceeEeeEEEEEecCcEEEEEeCC--------CcEEEEecCCCCCc-eEEeccCCCceeEEEecCCCCeEEEe
Q psy13076        340 AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS--------GFISYLDVNNPSTP-IRVIKGHNKPITALALSPDRGTVFTG  410 (423)
Q Consensus       340 ~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--------~~i~~~~~~~~~~~-~~~~~~h~~~v~~i~~sp~~~~l~s~  410 (423)
                      -...-....+.. ....+..++...+.|+.+        ..+..||..+..-. +..+. +...-.+++ ..++++++.|
T Consensus       418 W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~-~~~~~iyv~G  494 (534)
T PHA03098        418 WSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLC-IFNNKIYVVG  494 (534)
T ss_pred             eeecCCCCcccc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-cccccceEE-EECCEEEEEc
Confidence            321111111111 111233456656666532        12777887653210 00000 001111111 2267788888


Q ss_pred             cCC-----CcEEEeeCCC
Q psy13076        411 SHD-----GFITRWNAKT  423 (423)
Q Consensus       411 s~D-----~~i~~W~~~~  423 (423)
                      |.+     ..|..+|+++
T Consensus       495 G~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        495 GDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CCcCCcccceeEEEeCCC
Confidence            765     4677777653

>PHA02713 hypothetical protein; Provisional

Probab=90.36  E-value=20  Score=35.59  Aligned_cols=63  Identities=10%  Similarity=0.205  Sum_probs=35.8

Q ss_pred             CCCEEEEEEecC------eEEEEECCC-cc--ceecccccccCCCeEEEEECCCCCeEEEEeCCC--cEEEEecCCcc
Q psy13076        273 SGSHFASAGFDG------KVFLYDGAS-AD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK--TCKLWDIETKS  339 (423)
Q Consensus       273 ~g~~l~s~s~dg------~i~vwd~~~-~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~--~i~iwd~~~~~  339 (423)
                      +|+..+.|+.++      .+..||..+ .+  .+..+..  .......+++  +|+..+.|+.|+  ++..||..+.+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--ccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            566667776542      366788775 22  2223321  1122222333  678888998888  67777776653

>KOG4441|consensus

Probab=90.34  E-value=21  Score=35.62  Aligned_cols=141  Identities=18%  Similarity=0.255  Sum_probs=73.5

Q ss_pred             CCCEEEEEEec-C-----eEEEEECCCccce--ecccccccCCCeEEEEECCCCCeEEEEeCCCc-----EEEEecCCcc
Q psy13076        273 SGSHFASAGFD-G-----KVFLYDGASADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASGDKT-----CKLWDIETKS  339 (423)
Q Consensus       273 ~g~~l~s~s~d-g-----~i~vwd~~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~-----i~iwd~~~~~  339 (423)
                      +|...++|+.| |     .+..||..+.+-.  ..+....+.   .+++. -+|...+.|+.||.     +-.||..+.+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~---~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD---FGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc---ceeEE-ECCEEEEEeccccccccccEEEecCCCCc
Confidence            56778889988 3     5677887665521  111111111   12222 26778888888864     7778877654


Q ss_pred             eeeeeeeCceeEeeEEEEEecCcEEEEEeCCC------cEEEEecCCCC----CceEEeccCCCceeEEEecCCCCeEEE
Q psy13076        340 AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG------FISYLDVNNPS----TPIRVIKGHNKPITALALSPDRGTVFT  409 (423)
Q Consensus       340 ~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~------~i~~~~~~~~~----~~~~~~~~h~~~v~~i~~sp~~~~l~s  409 (423)
                      --..-.+.. .....-.+..+|...++|+.++      .+..||..+..    .+..+.+.+.+    ++ .-++.+.+.
T Consensus       408 W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g----~a-~~~~~iYvv  481 (571)
T KOG4441|consen  408 WTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG----VA-VLNGKIYVV  481 (571)
T ss_pred             ccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce----EE-EECCEEEEE
Confidence            211111111 1111122345788778877554      35666665421    11111122111    22 236778888


Q ss_pred             ecCCCc-----EEEeeCCC
Q psy13076        410 GSHDGF-----ITRWNAKT  423 (423)
Q Consensus       410 ~s~D~~-----i~~W~~~~  423 (423)
                      ||.|+.     |..+|+.|
T Consensus       482 GG~~~~~~~~~VE~ydp~~  500 (571)
T KOG4441|consen  482 GGFDGTSALSSVERYDPET  500 (571)
T ss_pred             CCccCCCccceEEEEcCCC
Confidence            888763     66677654

>KOG2280|consensus

Probab=90.25  E-value=22  Score=35.73  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=36.6

Q ss_pred             cCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076        263 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD  317 (423)
Q Consensus       263 ~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~  317 (423)
                      ..+..+.+||+.++|+-=...|.|.+-+....+.+.++....|. ....++|..+
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn  270 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN  270 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence            44667889999999999999999998887666665555422222 2235566543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.18  E-value=6.8  Score=37.23  Aligned_cols=147  Identities=16%  Similarity=0.237  Sum_probs=78.7

Q ss_pred             CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCe------eEEEEeCCCeEEEEcCCCceeeeecc
Q psy13076        186 DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPF------RIITGSEDNTIAVFEGPPFKFKMTKQ  259 (423)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~s~s~d~~i~~~~~~~~~~~~~~~  259 (423)
                      +.+.++....+.....+..+.+.|+.+.+...+...  -+.|.|...+      .-+.|-.+..+.-.|.+....+....
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            333444433333333445556667766665555433  4556654322      12334444444444432211111222


Q ss_pred             ccccCeEEEEEC----CCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076        260 EHSRFVQAVRYS----PSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       260 ~~~~~i~~l~~s----~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~  335 (423)
                      ....+.+-=.|+    -...|+|.||..|-|++||.-.-+.-..+  ++....|..+..+.+|.++++.+. ..+.+-|+
T Consensus       555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal--P~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL--PGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcC--cccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence            222222222222    23459999999999999995432222222  345677889999999999877664 56777776


Q ss_pred             CC
Q psy13076        336 ET  337 (423)
Q Consensus       336 ~~  337 (423)
                      +-
T Consensus       632 ~i  633 (776)
T COG5167         632 PI  633 (776)
T ss_pred             cc
Confidence            53

>KOG2247|consensus

Probab=90.16  E-value=0.033  Score=51.60  Aligned_cols=143  Identities=20%  Similarity=0.301  Sum_probs=90.9

Q ss_pred             EEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE-EEEeCCCcEEEEecCCcceeeee
Q psy13076        266 QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL-LTASGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       266 ~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~s~s~d~~i~iwd~~~~~~i~~~  344 (423)
                      -...|-|.+..++.+..+..+..||- .++...+..   ..+...+++|+-++..+ +.+-..+.+.+||+.+... .++
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n---~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL  112 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN---PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL  112 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhh-hcceecccC---CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence            34567788888888888888889984 344333332   23445678888887654 4456678899999976421 111


Q ss_pred             eeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCc
Q psy13076        345 LMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF  415 (423)
Q Consensus       345 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~  415 (423)
                      ..+......-..-++.+..++.+...|.+.+++..+.+..+ +...|.+.++++++.+.+.- +.++.|.+
T Consensus       113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii-v~Gkh~RRgtq~av~lEd~v-il~dcd~~  181 (615)
T KOG2247|consen  113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII-VMGKHQRRGTQIAVTLEDYV-ILCDCDNT  181 (615)
T ss_pred             hccCcchHHHHhhccCCccccccccccceEEEeccchhhhh-hhcccccceeEEEeccccee-eecCcHHH
Confidence            11111111111222345667778889999999988866533 33349999999999998744 44555543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.80  E-value=1.5  Score=43.55  Aligned_cols=71  Identities=21%  Similarity=0.226  Sum_probs=44.6

Q ss_pred             eCCEEEEEeccceEEEEeccC---CCCceee--cccc--------------------cCceeEEEEeC----CCCeEEEe
Q psy13076         15 QGDYLLTVSLSGFISYLDVNN---PSTPIRV--IKGH--------------------NKPITALALSP----DRGTVFTG   65 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~---~~~~~~~--~~gh--------------------~~~V~~l~~~~----~~~~l~sg   65 (423)
                      +...++.+..||.+..+....   .......  +..+                    ...+..+++..    +..+|++-
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            566777778888888887653   1111111  1111                    23566677766    67899999


Q ss_pred             cCCCceEEeecCCcceeecc
Q psy13076         66 SHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus        66 ~~D~~i~vW~~~~~~~~~~~   85 (423)
                      +.|+++|+||++++.++...
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999886654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=89.17  E-value=16  Score=35.57  Aligned_cols=115  Identities=13%  Similarity=0.246  Sum_probs=63.2

Q ss_pred             CCeEEEEECCC----CCeEEEEeCCCcEEEEecCCc-----ceeeee--eeCceeEeeEEEEEe--cCcEEEEEeCCCcE
Q psy13076        307 GGVYAVAWKPD----GTQLLTASGDKTCKLWDIETK-----SAVSEF--LMGNQVEDQQVSCLW--QGDYLLTVSLSGFI  373 (423)
Q Consensus       307 ~~i~~l~~~~~----~~~l~s~s~d~~i~iwd~~~~-----~~i~~~--~~~~~~~~~~~~~~~--~g~~l~~~~~~~~i  373 (423)
                      ..|.++.|.|-    ...|++.-..+.|.+|.+...     +.+...  ..+.+......-|.|  ....|+.-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            44789999984    335555667788999987521     211111  111111112223333  34444444444443


Q ss_pred             EEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe-cCCCcEEEeeC
Q psy13076        374 SYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG-SHDGFITRWNA  421 (423)
Q Consensus       374 ~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~-s~D~~i~~W~~  421 (423)
                      .+.+++-....++.=-.-++-|.|.+|.+||+.|+.+ |.-=.-++||-
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            4555554333343322345779999999999987644 44445588873

>PHA02790 Kelch-like protein; Provisional

Probab=88.96  E-value=24  Score=34.37  Aligned_cols=142  Identities=12%  Similarity=0.028  Sum_probs=66.9

Q ss_pred             CCCCEEEEEEecC--eEEEEECCCcc--ceecccccccCCCeEEEEECCCCCeEEEEeCCC---cEEEEecCCcceeeee
Q psy13076        272 PSGSHFASAGFDG--KVFLYDGASAD--LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK---TCKLWDIETKSAVSEF  344 (423)
Q Consensus       272 ~~g~~l~s~s~dg--~i~vwd~~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~---~i~iwd~~~~~~i~~~  344 (423)
                      -+|...+.|+.++  .+..||..+.+  ....+..+  .... +++ .-+|+..+.||.++   .+..||..+.+-...-
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~--r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~  392 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP--RCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGP  392 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC--Cccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCC
Confidence            3677777777643  57778765432  11222111  1111 222 23577777777553   4677887665332111


Q ss_pred             eeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCC-ceEEeccCCCceeEEEecCCCCeEEEecCC-----CcEEE
Q psy13076        345 LMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPST-PIRVIKGHNKPITALALSPDRGTVFTGSHD-----GFITR  418 (423)
Q Consensus       345 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D-----~~i~~  418 (423)
                      ....+.... ..+..+|...+.|   |....||..+..- .+..+. +...-..++ .-++++.+.||.+     ..|..
T Consensus       393 ~m~~~r~~~-~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~-~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~  466 (480)
T PHA02790        393 STYYPHYKS-CALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPI-YPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEV  466 (480)
T ss_pred             CCCCccccc-eEEEECCEEEEEC---CceEEecCCCCcEeEcCCCC-CCccccEEE-EECCEEEEECCcCCCcccceEEE
Confidence            111111111 1223466666666   3456677654211 011111 111111222 2367888888865     35777


Q ss_pred             eeCCC
Q psy13076        419 WNAKT  423 (423)
Q Consensus       419 W~~~~  423 (423)
                      ||+++
T Consensus       467 Yd~~~  471 (480)
T PHA02790        467 YNNRT  471 (480)
T ss_pred             EECCC
Confidence            87754

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.22  E-value=12  Score=31.46  Aligned_cols=100  Identities=22%  Similarity=0.399  Sum_probs=55.8

Q ss_pred             CeEEEEeCCCcEEEEecCCc--ceeeeeeeCceeEeeEEEEEecCcEEEEEeCCC------cEEEE-ecCC---CCCceE
Q psy13076        319 TQLLTASGDKTCKLWDIETK--SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG------FISYL-DVNN---PSTPIR  386 (423)
Q Consensus       319 ~~l~s~s~d~~i~iwd~~~~--~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~------~i~~~-~~~~---~~~~~~  386 (423)
                      ..|+.+.....|.+|++...  +.+.+|..  -.....+.....|++|++.-.+.      .+++| |++.   ...++.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            45545456678999999833  33334322  12333555566899999875433      33433 3322   222222


Q ss_pred             -EeccC---------------------CCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        387 -VIKGH---------------------NKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       387 -~~~~h---------------------~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                       .+.||                     +.++.+++-.|-..-|+.|+ ++.+.+|.+
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l  162 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTL  162 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEE
Confidence             23343                     34677888888666666555 456777764

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.15  E-value=18  Score=32.00  Aligned_cols=141  Identities=18%  Similarity=0.167  Sum_probs=81.5

Q ss_pred             eEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeee
Q psy13076        265 VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       265 i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~  344 (423)
                      +..+.++.  ++...+..+.-+++.|..+......+..-.-.+.-.++..  .|+++-.+..|.-+.+.|+.......--
T Consensus        89 ~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~la  164 (370)
T COG5276          89 FADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLA  164 (370)
T ss_pred             hheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceee
Confidence            34455553  4666666777899999887664433321111133345555  4677777776666888898764321111


Q ss_pred             eeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCC-ceeEEEecCCCCeEEE
Q psy13076        345 LMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK-PITALALSPDRGTVFT  409 (423)
Q Consensus       345 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~l~s  409 (423)
                      .+..-.......+.-.|++--.+..++.+.+.|+.++..|+-.-.-..+ .+.++..+++--+++.
T Consensus       165 grya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv  230 (370)
T COG5276         165 GRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV  230 (370)
T ss_pred             eeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE
Confidence            0000001111223336777777788999999999988777654333333 6888888876545443

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=87.26  E-value=19  Score=31.34  Aligned_cols=71  Identities=13%  Similarity=0.060  Sum_probs=44.7

Q ss_pred             CCCeEEEEECC------C-CCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEec-Cc-EEEEEeCCCcEEEE
Q psy13076        306 KGGVYAVAWKP------D-GTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ-GD-YLLTVSLSGFISYL  376 (423)
Q Consensus       306 ~~~i~~l~~~~------~-~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~-g~-~l~~~~~~~~i~~~  376 (423)
                      ...|+|++--+      + -.-|+.|..++.|.|.|.+....+.++..............++ .+ .++.++.||.|+..
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI  255 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence            34577776422      1 2578999999999999998887776665443222222333343 44 36677788887664

>KOG4460|consensus

Probab=87.12  E-value=6  Score=37.66  Aligned_cols=75  Identities=20%  Similarity=0.341  Sum_probs=48.9

Q ss_pred             eEEEEECCCCCEEEEEEecCeEEEEE---------CCCccceec---cc------ccccCCCeEEEEECCCC---CeEEE
Q psy13076        265 VQAVRYSPSGSHFASAGFDGKVFLYD---------GASADLVSE---LG------NPAHKGGVYAVAWKPDG---TQLLT  323 (423)
Q Consensus       265 i~~l~~s~~g~~l~s~s~dg~i~vwd---------~~~~~~~~~---~~------~~~~~~~i~~l~~~~~~---~~l~s  323 (423)
                      |..+..++.|..++-++.+|.+.+.=         .+.++....   ..      ...-.-.+..++|+|+.   ..|..
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i  185 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL  185 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence            56677899999999999999765532         112221111   00      00112235678999976   67778


Q ss_pred             EeCCCcEEEEecCCcc
Q psy13076        324 ASGDKTCKLWDIETKS  339 (423)
Q Consensus       324 ~s~d~~i~iwd~~~~~  339 (423)
                      -+.|.+||+||...-.
T Consensus       186 L~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  186 LTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EecCcEEEEEecCCcc
Confidence            8899999999987643

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.11  E-value=3.1  Score=24.00  Aligned_cols=30  Identities=20%  Similarity=0.224  Sum_probs=20.0

Q ss_pred             cCCCceeEEEecCCCCeEEEec-CC--CcEEEe
Q psy13076        390 GHNKPITALALSPDRGTVFTGS-HD--GFITRW  419 (423)
Q Consensus       390 ~h~~~v~~i~~sp~~~~l~s~s-~D--~~i~~W  419 (423)
                      .....-...+|||||++|+-++ .+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445677899999999987544 45  666666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.62  E-value=6.7  Score=32.02  Aligned_cols=29  Identities=14%  Similarity=0.226  Sum_probs=23.9

Q ss_pred             CceeEEEecCCC------CeEEEecCCCcEEEeeC
Q psy13076        393 KPITALALSPDR------GTVFTGSHDGFITRWNA  421 (423)
Q Consensus       393 ~~v~~i~~sp~~------~~l~s~s~D~~i~~W~~  421 (423)
                      ..|.+++|||-|      .+|+.-..++.+.+|..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~  120 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP  120 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence            379999999943      46888899999999964

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=85.08  E-value=26  Score=30.73  Aligned_cols=113  Identities=17%  Similarity=0.174  Sum_probs=74.4

Q ss_pred             cCeEEEEECCCCCEEEEEEecC--eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076        263 RFVQAVRYSPSGSHFASAGFDG--KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA  340 (423)
Q Consensus       263 ~~i~~l~~s~~g~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~  340 (423)
                      .+-..+.|..+|.++-+.+.-|  .|+.+|..+++.......+. .---.+++...+.=+.+ .-.+++..+||..+.+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d~l~qL-TWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGDKLYQL-TWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETTEEEEE-ESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECCEEEEE-EecCCeEEEEccccceE
Confidence            3456788877888887777655  69999999998765543321 22235566654433333 45789999999999988


Q ss_pred             eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCC
Q psy13076        341 VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP  381 (423)
Q Consensus       341 i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~  381 (423)
                      +.++....    .-+-...+|+.|+..+.+..++.+|..+.
T Consensus       123 ~~~~~y~~----EGWGLt~dg~~Li~SDGS~~L~~~dP~~f  159 (264)
T PF05096_consen  123 IGTFPYPG----EGWGLTSDGKRLIMSDGSSRLYFLDPETF  159 (264)
T ss_dssp             EEEEE-SS----S--EEEECSSCEEEE-SSSEEEEE-TTT-
T ss_pred             EEEEecCC----cceEEEcCCCEEEEECCccceEEECCccc
Confidence            88775432    23444468999998888999999997764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=84.81  E-value=32  Score=31.58  Aligned_cols=58  Identities=22%  Similarity=0.250  Sum_probs=33.9

Q ss_pred             CCCEEEEEEecCeEEEEECCCcccee-ccc-ccccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076        273 SGSHFASAGFDGKVFLYDGASADLVS-ELG-NPAHKGGVYAVAWKPDGTQLLTASGDKTC  330 (423)
Q Consensus       273 ~g~~l~s~s~dg~i~vwd~~~~~~~~-~~~-~~~~~~~i~~l~~~~~~~~l~s~s~d~~i  330 (423)
                      +|.++++.-..+.|....+.....+. ... .......+.++++.|||.+.++-..+|.|
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i  329 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI  329 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence            34455555445677766665332221 111 11233478999999999998888778876

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.00  E-value=27  Score=29.42  Aligned_cols=47  Identities=21%  Similarity=0.350  Sum_probs=35.8

Q ss_pred             ccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        150 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       150 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                      ...+.|.+|++...+......|... +.|..+.++..|+++++.....
T Consensus        35 ~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~   81 (215)
T PF14761_consen   35 ASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKN   81 (215)
T ss_pred             cCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeec
Confidence            4457899999985555445556655 7889999999999999986543

>KOG1916|consensus

Probab=82.98  E-value=0.43  Score=47.90  Aligned_cols=60  Identities=23%  Similarity=0.329  Sum_probs=46.7

Q ss_pred             cCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEE-----------ecCCCCeEEEecCCCcEEEeeC
Q psy13076        360 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA-----------LSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       360 ~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~-----------~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      +.-++.++..++.+.+.+.....+  ..+++|+.++++++           .||||..++.+..||.+++|.+
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            445666777788888887766544  45678998888865           4899999999999999999974

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=82.96  E-value=19  Score=34.08  Aligned_cols=51  Identities=8%  Similarity=0.024  Sum_probs=41.5

Q ss_pred             eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCC
Q psy13076         41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG   91 (423)
Q Consensus        41 ~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~   91 (423)
                      ..|......+.++..+|.+++.+....=|.|.++|+.++.++++.......
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA  351 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA  351 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence            345667778999999999999999888999999999998887776554433

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=82.60  E-value=45  Score=31.64  Aligned_cols=147  Identities=20%  Similarity=0.206  Sum_probs=77.7

Q ss_pred             CCCEEEEEccCCcEEEEEcCCCceeE--EeeecCCCCCeeEEEEC---CC-CCeEEEEEcCCceeeEEEee--cCCc---
Q psy13076        142 SGFYIASGDISGKVRIWDTVNKEHIL--KNEFHPIGGPIKDIAWS---PD-NQRMVVVGEGRERFGHVFMS--ETGT---  210 (423)
Q Consensus       142 ~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~v~~v~~s---~~-~~~~~~~~~~~~~~~~~~~~--~~~~---  210 (423)
                      +...++.|+..|.+|||+-...+...  .........||..+..-   +. ....+++-..+..  .++..  ..+.   
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl--~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKL--SVYSVSLVDGTVEH  113 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEE--EEEEEEecCCCccc
Confidence            34688999999999999975433110  01112234677776643   22 2222333222221  12211  1111   


Q ss_pred             ----ceecccCCC--cceeEEEEec----CCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEE
Q psy13076        211 ----SVGEISGQS--KPINSCDFKP----SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASA  280 (423)
Q Consensus       211 ----~~~~~~~~~--~~i~~~~~~~----~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~  280 (423)
                          .+..+..|.  .....+..-|    .+...+...+.||.+.+|+.....+...+.. .-....++|.|.-..|+++
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~  192 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA  192 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence                111111111  1111122222    2234577889999999999876655444333 2222346788888889999


Q ss_pred             EecCeEEEEEC
Q psy13076        281 GFDGKVFLYDG  291 (423)
Q Consensus       281 s~dg~i~vwd~  291 (423)
                      +.+..+.-|..
T Consensus       193 sss~~l~~Yky  203 (418)
T PF14727_consen  193 SSSWTLECYKY  203 (418)
T ss_pred             cCceeEEEecH
Confidence            98888888763

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=82.03  E-value=35  Score=29.94  Aligned_cols=182  Identities=13%  Similarity=0.131  Sum_probs=99.4

Q ss_pred             eEEEEeCCEEEEEeccc--eEEEEeccCCCCcee-eccc-ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076         10 VSCLWQGDYLLTVSLSG--FISYLDVNNPSTPIR-VIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg--~i~~~d~~~~~~~~~-~~~g-h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      +.+..||.++-+.+.-|  .|+.+|+.++..... .|.. ..++  .+..- ++++..-.-.++...+||.++.+.+.++
T Consensus        50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE--Git~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~  126 (264)
T PF05096_consen   50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGE--GITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTF  126 (264)
T ss_dssp             EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EE--EEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccce--eEEEE-CCEEEEEEecCCeEEEEccccceEEEEE
Confidence            44445677778877776  888999876432211 1221 1111  22222 3344445668899999999988877777


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEec-CCeEEEEecCCCcccccccCC-----cceEEEEEECCCCCEEEEEccCCcEEEEE
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEH-----SCAVNVAKYSPSGFYIASGDISGKVRIWD  159 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~h-----~~~i~~~~~sp~~~~l~s~~~d~~i~vwd  159 (423)
                      .....|--+.    .+++.++.++ ...+..+|+++-+..+.+.-.     -..++-+.|. +|...|-.=....|-.-|
T Consensus       127 ~y~~EGWGLt----~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id  201 (264)
T PF05096_consen  127 PYPGEGWGLT----SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID  201 (264)
T ss_dssp             E-SSS--EEE----ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             ecCCcceEEE----cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence            6554444333    4566666655 467778887765444433221     1234555554 555555554555666667


Q ss_pred             cCCCceeEEeeecC-------------CCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        160 TVNKEHILKNEFHP-------------IGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       160 ~~~~~~~~~~~~~~-------------~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                      .++++..-...+..             ..+..+.||+.|+.+.+++.|..-..
T Consensus       202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~  254 (264)
T PF05096_consen  202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPK  254 (264)
T ss_dssp             TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SE
T ss_pred             CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCc
Confidence            77766543222110             12446789999999988887755443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13684 Ycf48-like protein; Provisional

Probab=81.36  E-value=44  Score=30.70  Aligned_cols=153  Identities=15%  Similarity=0.235  Sum_probs=79.2

Q ss_pred             CCcceEEEEEECCCCCEEEEEccCCcEE-EEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE-ee
Q psy13076        129 EHSCAVNVAKYSPSGFYIASGDISGKVR-IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF-MS  206 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~s~~~d~~i~-vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~-~~  206 (423)
                      .-...+..+.+.|++.+++.+. .|.+. .++  .....+..........+.++.+.++++.+++...+ .   .+. ..
T Consensus       170 ~~~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~--~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G-~---~~~~s~  242 (334)
T PRK13684        170 DAAGVVRNLRRSPDGKYVAVSS-RGNFYSTWE--PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGG-Q---IRFNDP  242 (334)
T ss_pred             CCcceEEEEEECCCCeEEEEeC-CceEEEEcC--CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCC-E---EEEccC
Confidence            3356788899999988777665 34443 222  11111111222234568899999998866554322 1   112 23


Q ss_pred             cCCcceecccC----CCcceeEEEEecCCCeeEEEEeCCCeEEEEcC--CCceeeeeccccccCeEEEEECCCCCEEEEE
Q psy13076        207 ETGTSVGEISG----QSKPINSCDFKPSRPFRIITGSEDNTIAVFEG--PPFKFKMTKQEHSRFVQAVRYSPSGSHFASA  280 (423)
Q Consensus       207 ~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~--~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~  280 (423)
                      +.+........    ....+..+.+.|.+.  ++.++.+|.+..-..  ..+...............+.|..+++.++ .
T Consensus       243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~--~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~  319 (334)
T PRK13684        243 DDLESWSKPIIPEITNGYGYLDLAYRTPGE--IWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L  319 (334)
T ss_pred             CCCCccccccCCccccccceeeEEEcCCCC--EEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence            44444333221    123466778887665  444556676554221  22222111112223456666666666555 4


Q ss_pred             EecCeEEEEEC
Q psy13076        281 GFDGKVFLYDG  291 (423)
Q Consensus       281 s~dg~i~vwd~  291 (423)
                      +..|.|.-++.
T Consensus       320 G~~G~il~~~~  330 (334)
T PRK13684        320 GQRGVLLRYVG  330 (334)
T ss_pred             CCCceEEEecC
Confidence            56788777653

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.81  E-value=19  Score=29.41  Aligned_cols=31  Identities=26%  Similarity=0.426  Sum_probs=25.4

Q ss_pred             ceEEEEEECCCC------CEEEEEccCCcEEEEEcCC
Q psy13076        132 CAVNVAKYSPSG------FYIASGDISGKVRIWDTVN  162 (423)
Q Consensus       132 ~~i~~~~~sp~~------~~l~s~~~d~~i~vwd~~~  162 (423)
                      ..+..++|||.|      .+||....++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478899999964      4788899999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=80.06  E-value=30  Score=31.67  Aligned_cols=58  Identities=21%  Similarity=0.358  Sum_probs=33.6

Q ss_pred             EEECCCCCEEEEEEec------CeEEEEECCCccceecc-------------cccccCCCeEEEEECCCCCeEEEEeC
Q psy13076        268 VRYSPSGSHFASAGFD------GKVFLYDGASADLVSEL-------------GNPAHKGGVYAVAWKPDGTQLLTASG  326 (423)
Q Consensus       268 l~~s~~g~~l~s~s~d------g~i~vwd~~~~~~~~~~-------------~~~~~~~~i~~l~~~~~~~~l~s~s~  326 (423)
                      +++.++|.++++--.+      ..|+-++.. |+....+             .....+.+..+|+++|+|+.|+++..
T Consensus        90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            4445556555554445      556666644 3332222             11124677899999999996665533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	423
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		6e-95
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		4e-51
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		3e-50
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-24
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-13
2h9l_A	329	Wdr5delta23 Length = 329		2e-17
2h9l_A	329	Wdr5delta23 Length = 329		4e-12
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-17
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-12
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-17
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-12
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-17
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-12
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-17
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-12
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-17
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-12
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-17
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-12
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-17
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-12
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-17
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-12
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-17
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-12
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-17
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-12
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-17
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-12
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-17
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-12
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-17
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-12
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-17
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-12
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-16
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-16
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-11
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-13
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-13
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-13
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		8e-13
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-12
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		9e-13
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-10
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-11
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		7e-11
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-09
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		9e-11
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		9e-11
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		9e-11
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		9e-11
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		4e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-10
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-10
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-10
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-10
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-09
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-09
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-09
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-09
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-09
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-09
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-08
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		6e-08
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		6e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-08
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-07
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-07
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-07
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-07
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-07
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-07
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		4e-06
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		6e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		6e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		7e-05
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		3e-04
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		3e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		4e-04

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score =  344 bits (882), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 168/348 (48%), Positives = 227/348 (65%), Gaps = 6/348 (1%)
Query: 81  IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS 140
           +F +LPRT RG  +VLG  P G    Y NG SV    + +   ++IYTEHS    VAK S
Sbjct: 9   LFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 68
Query: 141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF 200
           PSG+Y ASGD+ G VRIWDT    HILK       GP+KDI+W  +++R+  VGEGRERF
Sbjct: 69  PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128
Query: 201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE 260
           GHVF+ +TGTS G ++GQ++ +NS DFKPSRPFRII+GS+DNT+A+FEGPPFKFK T  E
Sbjct: 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 188
Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV-----SELGNPAHKGGVYAVAWK 315
           H++FV +VRY+P GS FAS G DG + LY+G             L N AH G V+ + W 
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
           PDGT++ +AS DKT K+W++ T        +G ++EDQQ+  +W    L+++S +GFI++
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           ++    S   +V  GHNK ITAL+ S D  T+F+   +G I  W+  T
Sbjct: 309 VNPELGSID-QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score =  198 bits (504), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 201/360 (55%), Gaps = 29/360 (8%)
Query: 86  PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTEHSCAVNVAKYS 140
           P TQR     L  DP      Y  G S  +R +++     P +       S  V   K+S
Sbjct: 14  PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 73
Query: 141 P--SGFYIASGDISGKVRIWD-TVNKEHI-----LKNEFHPIGGPIKDIAWSPDNQRMVV 192
           P     Y+ SGD SGKV +W  T +KE       +K+EF  + GPI DI+W  + +R+ V
Sbjct: 74  PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133
Query: 193 VGEGRERFGHVFMS-ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP 251
           VGEGR+ FG VF+S ++G S+GE+SG S+ IN+C  K SRP R +T  +D ++  ++GPP
Sbjct: 134 VGEGRDNFG-VFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 192
Query: 252 FKFKMTKQEHSR---FVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAH-- 305
           FKF  + + H +   FV+ V +SP SG    + G D K+  +DG S + +  + +     
Sbjct: 193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 252
Query: 306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF-LMGNQVEDQQVSCLWQGD-Y 363
           +GG++A++W  D  +  T   D T ++WD+ T   V ++ L   Q+ +QQV  +  G+  
Sbjct: 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           ++++SL G +++ ++ +    ++ I GHNK ITAL ++P    + +GS+DG I  W++ +
Sbjct: 312 IISLSLDGTLNFYELGHDEV-LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 366

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/356 (34%), Positives = 197/356 (55%), Gaps = 29/356 (8%)
Query: 86  PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTEHSCAVNVAKYS 140
           P TQR     L  DP      Y  G S  +R +++     P +       S  V   K+S
Sbjct: 14  PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 73
Query: 141 P--SGFYIASGDISGKVRIWD-TVNKEHI-----LKNEFHPIGGPIKDIAWSPDNQRMVV 192
           P     Y+ SGD SGKV +W  T +KE       +K+EF  + GPI DI+W  + +R+ V
Sbjct: 74  PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133
Query: 193 VGEGRERFGHVFMS-ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP 251
           VGEGR+ FG VF+S ++G S+GE+SG S+ IN+C  K SRP R  T  +D ++  ++GPP
Sbjct: 134 VGEGRDNFG-VFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQGPP 192
Query: 252 FKFKMTKQEHSR---FVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAH-- 305
           FKF  + + H +   FV+ V +SP SG    + G D K+  +DG S + +  + +     
Sbjct: 193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 252
Query: 306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF-LMGNQVEDQQVSCLWQGD-Y 363
           +GG++A++W  D  +  T   D T ++WD+ T   V ++ L   Q+ +QQV  +  G+  
Sbjct: 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
           ++++SL G +++ ++ +    ++ I GHNK ITAL ++P    + +GS+DG I  W
Sbjct: 312 IISLSLDGTLNFYELGHDEV-LKTISGHNKGITALTVNP----LISGSYDGRIXEW 362

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 164/384 (42%), Gaps = 23/384 (5%)
Query: 40  IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG- 98
           ++ + GH+  +  +A SPD  T+ + S D  +  WN   + +     +T  G    + G 
Sbjct: 91  LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----QTLTGHSSSVWGV 145
Query: 99  --DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVR 156
              P G+     + +  +     N  +    T HS +V    +SP G  IAS      V+
Sbjct: 146 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 205
Query: 157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS 216
           +W   N+   L          ++ +A+SPD Q +    + +        +  G  +  ++
Sbjct: 206 LW---NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLT 259
Query: 217 GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
           G S  +N   F+P     I + S+D T+ ++     +   T   HS  V  V +SP G  
Sbjct: 260 GHSSSVNGVAFRPDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT 317
Query: 277 FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE 336
            ASA  D  V L++     L +  G   H   V+ VA+ PDG  + +AS DKT KLW+  
Sbjct: 318 IASASDDKTVKLWNRNGQHLQTLTG---HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
Query: 337 TKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPIT 396
            +  + + L G+    + V+    G  + + S    +   + N     ++ + GH+  + 
Sbjct: 375 GQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVW 430
Query: 397 ALALSPDRGTVFTGSHDGFITRWN 420
            +A SPD  T+ + S D  +  WN
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWN 454

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 12/253 (4%)
Query: 168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF 227
           +N        ++ +A+SPD Q +    + +        +  G  +  ++G S  +    F
Sbjct: 9   RNRLEAHSSSVRGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVWGVAF 65
Query: 228 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF 287
            P     I + S+D T+ ++     +   T   HS  V+ V +SP G   ASA  D  V 
Sbjct: 66  SPDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 288 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG 347
           L++  +  L+  L    H   V+ VA+ PDG  + +AS DKT KLW+   +  + + L G
Sbjct: 124 LWN-RNGQLLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTG 178
Query: 348 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV 407
           +      V+    G  + + S    +   + N     ++ + GH+  +  +A SPD  T+
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQTI 236
Query: 408 FTGSHDGFITRWN 420
            + S D  +  WN
Sbjct: 237 ASASDDKTVKLWN 249

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 29  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 86
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 87  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 143
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 204 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 255
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 256 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 314
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 315 ALENDKTIKLWKS 327

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 28  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 82
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q + +
Sbjct: 83  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQSNLI 139
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           ++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 140 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 75
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 76  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 132
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 193 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 244
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 303
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 304 ALENDKTIKLWKS 316

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 17  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 71
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q + +
Sbjct: 72  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS--NYVFCCNFNPQSNLI 128
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           ++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 129 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 8   NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 65
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 66  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 122
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 183 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 234
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 293
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 294 ALENDKTIKLWKS 306

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 7   PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 61
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q + +
Sbjct: 62  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS--NYVFCCNFNPQSNLI 118
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           ++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 119 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 11  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 68
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 69  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 125
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 186 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 237
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 296
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 297 ALENDKTIKLWKS 309

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 10  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 64
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q + +
Sbjct: 65  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS--NYVFCCNFNPQSNLI 121
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           ++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 122 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 17  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 74
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 75  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 131
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 192 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 243
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 302
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 303 ALENDKTIKLWKS 315

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 16  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 70
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q + +
Sbjct: 71  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS--NYVFCCNFNPQSNLI 127
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           ++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 128 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 75
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 76  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 132
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 193 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 244
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 303
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 304 ALENDKTIKLWKS 316

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 17  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 71
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q + +
Sbjct: 72  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQSNLI 128
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           ++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 129 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 75
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 76  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 132
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 193 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 244
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 303
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 304 ALENDKTIKLWKS 316

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 17  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 71
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q + +
Sbjct: 72  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS--NYVFCCNFNPQSNLI 128
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           ++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 129 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 13  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 70
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 71  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 127
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 188 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 239
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 298
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 299 ALENDKTIKLWKS 311

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 12  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 66
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q + +
Sbjct: 67  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQSNLI 123
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           ++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 124 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 69
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 70  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 126
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 187 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 238
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 297
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 298 ALENDKTIKLWKS 310

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 11  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 65
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q + +
Sbjct: 66  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQSNLI 122
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           ++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 123 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 69
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 70  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 126
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 187 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 238
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 297
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 298 ALENDKTIKLWKS 310

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 11  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 65
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q + +
Sbjct: 66  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQSNLI 122
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           ++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 123 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 12/218 (5%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 72
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 73  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 129
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
           L    NP     V  V + P+G  +L A+ D T KLWD
Sbjct: 190 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNP 303
           F  P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S     
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----- 65
Query: 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QG 361
            HK G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q 
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQS 122
Query: 362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           + +++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 12/218 (5%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 72
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 73  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 129
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
           L    NP     V  V + P+G  +L A+ D T KLWD
Sbjct: 190 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNP 303
           F  P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S     
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----- 65
Query: 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QG 361
            HK G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q 
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQS 122
Query: 362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           + +++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 141/313 (45%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 36  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 93
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   +  ++   ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 94  DVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 150
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 151 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 210
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 211 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 262
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 263 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 321
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 322 ALENDKTIKLWKS 334

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 35  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 89
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDY 363
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+      V C     Q + 
Sbjct: 90  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS---NYVFCCNFNPQSNL 145
Query: 364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           +++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 146 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 141/313 (45%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I 
Sbjct: 34  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 91
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   +  ++   ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 92  DVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 148
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 209 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 260
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 261 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 319
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 320 ALENDKTIKLWKS 332

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +  K T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 33  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 87
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDY 363
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+      V C     Q + 
Sbjct: 88  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS---NYVFCCNFNPQSNL 143
Query: 364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           +++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 144 IVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 140/313 (44%), Gaps = 25/313 (7%)
Query: 120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
           N A+      H+ AV+  K+SP+G ++A+      ++IW   + +       H +G  I 
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG--IS 72
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
           D+AWS D+  +V   + +     ++   +G  +  + G S  +  C+F P     I++GS
Sbjct: 73  DVAWSSDSNLLVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGS 129
Query: 240 EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE 299
            D ++ +++    K   T   HS  V AV ++  GS   S+ +DG   ++D AS   +  
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 300 L---GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS 356
           L    NP     V  V + P+G  +L A+ D T KLWD      +  +  G++ E     
Sbjct: 190 LIDDDNPP----VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKY--- 241
Query: 357 CLWQ------GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG 410
           C++       G ++++ S    +   ++      ++ ++GH   + + A  P    + + 
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASA 300
Query: 411 S--HDGFITRWNA 421
           +  +D  I  W +
Sbjct: 301 ALENDKTIKLWKS 313

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNP 303
           F  P +  K T   H++ V +V++SP+G   A++  D  + +   YDG     +S     
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS----- 65
Query: 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QG 361
            HK G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q 
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGH--SNYVFCCNFNPQS 122
Query: 362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           + +++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 12/208 (5%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
           H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I D+AWS D+  
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNL 82
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG 249
           +V   + +     ++   +G  +  + G S  +  C+F P     I++GS D ++ +++ 
Sbjct: 83  LVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDV 139
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHK 306
                  T   HS  V AV ++  GS   S+ +DG   ++D AS   +  L    NP   
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-- 197
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWD 334
             V  V + P+G  +L A+ D T KLWD
Sbjct: 198 --VSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +    T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 14  PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 68
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW--QGDYL 364
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+   +    C +  Q + +
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS--NYVFCCNFNPQSNLI 125
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           ++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 126 VSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 12/208 (5%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
           H+ AV+  K+SP+G ++AS      ++IW   + +       H +G  I D+AWS D+  
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSNL 82
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG 249
           +V   + +     ++   +G  +  + G S  +  C+F P     I++GS D ++ +++ 
Sbjct: 83  LVSASDDKTL--KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDV 139
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL---GNPAHK 306
                  T   HS  V AV ++  GS   S+ +DG   ++D AS   +  L    NP   
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-- 197
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWD 334
             V  V + P+G  +L A+ D   KLWD
Sbjct: 198 --VSFVKFSPNGKYILAATLDNDLKLWD 223

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL---YDGASADLVSELGNPAHK 306
           P +    T   H++ V +V++SP+G   AS+  D  + +   YDG     +S      HK
Sbjct: 14  PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 68
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDY 363
            G+  VAW  D   L++AS DKT K+WD+ +   + + L G+      V C     Q + 
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-KTLKGHS---NYVFCCNFNPQSNL 124
Query: 364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           +++ S    +   DV      ++ +  H+ P++A+  + D   + + S+DG    W+
Sbjct: 125 IVSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 159/409 (38%), Gaps = 55/409 (13%)
Query: 43   IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
            IK H   +   A S D   + T S D  +  W++ T  +  T              +   
Sbjct: 660  IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 103  KNFLYTNGNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD- 159
               L T  N   ++  ++      +    H+ +VN  ++SP    +AS    G +R+WD 
Sbjct: 720  HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 160  -------TVN-KEHILKNEFHP--IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG 209
                   ++N K   L +E  P  +   +K  +WS D  +++V  + +     V + +  
Sbjct: 780  RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-----VLLFDIH 834
Query: 210  TS--VGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-QEHSRFV 265
            TS  + EI +G    I  CDF P     +I  S+            + K+   + H  +V
Sbjct: 835  TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ--YCVELWNIDSRLKVADCRGHLSWV 892
Query: 266  QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325
              V +SP GS F +A  D  + +++      V +      K  +  V ++ + T +L   
Sbjct: 893  HGVMFSPDGSSFLTASDDQTIRVWETKK---VCKNSAIVLKQEI-DVVFQENETMVLAVD 948
Query: 326  GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI 385
              +  +L  I  K+   ++L      + QVSC           LS  + Y+   +    I
Sbjct: 949  NIRGLQL--IAGKTGQIDYL-----PEAQVSC---------CCLSPHLEYVAFGDEDGAI 992
Query: 386  RVIK-----------GHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
            ++I+           GH K +  +  + D  T+ + S D  I  WN +T
Sbjct: 993  KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1041

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 125/305 (40%), Gaps = 18/305 (5%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
           H+ AV  A +S  G  IAS      ++++     E +L  + H     +   A+S D+  
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSSDDSY 678
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF-KPSRPFRIITGSEDNTIAVFE 248
           +      ++    ++ S TG  V      S+ +N C F   S    + TGS D  + +++
Sbjct: 679 IATCSADKKV--KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-----------LV 297
               + + T   H+  V   R+SP     AS   DG + L+D  SA+           L 
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 796
Query: 298 SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSC 357
           SE      +  V   +W  DG +++ A+ +K   L+DI T   ++E   G+    Q    
Sbjct: 797 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCD- 854
Query: 358 LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFIT 417
               D+L  ++LS +   L   +    +   +GH   +  +  SPD  +  T S D  I 
Sbjct: 855 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR 914
Query: 418 RWNAK 422
            W  K
Sbjct: 915 VWETK 919

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 314
           ++  + H+  V    +S  G   AS G D  + ++   + + + ++   AH+  V   A+
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAF 672
Query: 315 KPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDYLLTVSLSG 371
             D + + T S DK  K+WD    SA  + +       +QV+C     + ++LL  + S 
Sbjct: 673 SSDDSYIATCSADKKVKIWD----SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 728
Query: 372 --FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
             F+   D+N        + GH   +     SPD   + + S DG +  W+ ++
Sbjct: 729 DFFLKLWDLNQKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 159/409 (38%), Gaps = 55/409 (13%)
Query: 43   IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
            IK H   +   A S D   + T S D  +  W++ T  +  T              +   
Sbjct: 653  IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 103  KNFLYTNGNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD- 159
               L T  N   ++  ++      +    H+ +VN  ++SP    +AS    G +R+WD 
Sbjct: 713  HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 160  -------TVN-KEHILKNEFHP--IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG 209
                   ++N K   L +E  P  +   +K  +WS D  +++V  + +     V + +  
Sbjct: 773  RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-----VLLFDIH 827
Query: 210  TS--VGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-QEHSRFV 265
            TS  + EI +G    I  CDF P     +I  S+            + K+   + H  +V
Sbjct: 828  TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ--YCVELWNIDSRLKVADCRGHLSWV 885
Query: 266  QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325
              V +SP GS F +A  D  + +++      V +      K  +  V ++ + T +L   
Sbjct: 886  HGVMFSPDGSSFLTASDDQTIRVWETKK---VCKNSAIVLKQEI-DVVFQENETMVLAVD 941
Query: 326  GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI 385
              +  +L  I  K+   ++L      + QVSC           LS  + Y+   +    I
Sbjct: 942  NIRGLQL--IAGKTGQIDYL-----PEAQVSC---------CCLSPHLEYVAFGDEDGAI 985
Query: 386  RVIK-----------GHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
            ++I+           GH K +  +  + D  T+ + S D  I  WN +T
Sbjct: 986  KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 125/305 (40%), Gaps = 18/305 (5%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
           H+ AV  A +S  G  IAS      ++++     E +L  + H     +   A+S D+  
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSSDDSY 671
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDF-KPSRPFRIITGSEDNTIAVFE 248
           +      ++    ++ S TG  V      S+ +N C F   S    + TGS D  + +++
Sbjct: 672 IATCSADKKV--KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-----------LV 297
               + + T   H+  V   R+SP     AS   DG + L+D  SA+           L 
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789
Query: 298 SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSC 357
           SE      +  V   +W  DG +++ A+ +K   L+DI T   ++E   G+    Q    
Sbjct: 790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCD- 847
Query: 358 LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFIT 417
               D+L  ++LS +   L   +    +   +GH   +  +  SPD  +  T S D  I 
Sbjct: 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR 907
Query: 418 RWNAK 422
            W  K
Sbjct: 908 VWETK 912

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 314
           ++  + H+  V    +S  G   AS G D  + ++   + + + ++   AH+  V   A+
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAF 665
Query: 315 KPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDYLLTVSLSG 371
             D + + T S DK  K+WD    SA  + +       +QV+C     + ++LL  + S 
Sbjct: 666 SSDDSYIATCSADKKVKIWD----SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 721
Query: 372 --FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
             F+   D+N        + GH   +     SPD   + + S DG +  W+ ++
Sbjct: 722 DFFLKLWDLNQKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 137/327 (41%), Gaps = 35/327 (10%)
Query: 35  NPSTPI--RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA----KTEYIFATLPRT 88
           NP+  +  R ++GH+  + +L  +P++  + + S DG +  WNA    KT  I    P  
Sbjct: 52  NPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWV 111
Query: 89  QR------GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP- 141
                   GQ +  GG     +    N +S   R+   P +S + T H    +  +Y P 
Sbjct: 112 MECAFAPNGQSVACGGLDSACSIF--NLSSQADRDGNMP-VSRVLTGHKGYASSCQYVPD 168
Query: 142 --SGFYIASGDISGKVRIWDTVNKEH--ILKNEFHPIGGPIKDIAWSPD--NQRMVVVGE 195
             +     SGD +    +WD    +   I  +EF P G     ++ S +  N  M + G 
Sbjct: 169 QETRLITGSGDQT--CVLWDVTTGQRISIFGSEF-PSGHTADVLSLSINSLNANMFISGS 225
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKF 254
                    +  T  +V    G    INS  F P    R  TGS+D T  +F+     + 
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQL 284
Query: 255 KMTKQEHSR------FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG--NPAHK 306
           ++  +E  R       V +V +S SG    +   +G  +++D   A++V  LG    +H+
Sbjct: 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHE 344
Query: 307 GGVYAVAWKPDGTQLLTASGDKTCKLW 333
           G +  +    DG+ L T S DK  K+W
Sbjct: 345 GRISCLGLSSDGSALCTGSWDKNLKIW 371

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 16/222 (7%)
Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 274
           + G S  + S D+ P + + I++ S+D  + V+     +     + H  +V    ++P+G
Sbjct: 62  LQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 275 SHFASAGFDGKVFLYDGASADLVSELGN-------PAHKGGVYAVAWKPDG-TQLLTASG 326
              A  G D    +++ +S       GN         HKG   +  + PD  T+L+T SG
Sbjct: 121 QSVACGGLDSACSIFNLSSQ--ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG 178
Query: 327 DKTCKLWDIETKSAV----SEFLMGNQVEDQQVSC-LWQGDYLLTVSLSGFISYLDVNNP 381
           D+TC LWD+ T   +    SEF  G+  +   +S      +  ++ S    +   D+   
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           S  +R   GH   I ++   PD     TGS DG    ++ +T
Sbjct: 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 121/295 (41%), Gaps = 35/295 (11%)
Query: 128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 187
           T HS  V     S  G +  SG   G++R+WD      +    F      +  +A+S DN
Sbjct: 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA--AGVSTRRFVGHTKDVLSVAFSLDN 484
Query: 188 QRMVVVGEGRERFGHVFMSETGTSVGEI-SGQSKPINSCDFKPS--RPFRIITGSEDNTI 244
           +++V     R       + E   ++ E   G    ++   F P+  +P  I++ S D T+
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP-TIVSASWDKTV 543
Query: 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA 304
            V+     K + T   H+ +V  V  SP GS  AS G DG V L+D A    +  L    
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---E 600
Query: 305 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL 364
               ++A+ + P+    L A+ +   K+WD+E+KS V +                     
Sbjct: 601 ANSVIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVED--------------------- 638
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
           L V L       D + P+   R +       T+L  S D  T+F+G  DG I  W
Sbjct: 639 LKVDLKAEAEKADNSGPAATKRKV----IYCTSLNWSADGSTLFSGYTDGVIRVW 689

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 37/224 (16%)
Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE------------HS 262
           ++  + PI++ D        I++ S D +I ++       K+TK +            HS
Sbjct: 385 VTAIATPIDNADI-------IVSASRDKSIILW-------KLTKDDKAYGVAQRRLTGHS 430
Query: 263 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL 322
            FV+ V  S  G    S  +DG++ L+D A+   VS      H   V +VA+  D  Q++
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 323 TASGDKTCKLWDI--ETKSAVSEFLMGNQVEDQQVSCLWQGDYLL--TVSLSGFISYLDV 378
           +AS D+T KLW+   E K  +SE   G +     VSC+      L  T+  + +   + V
Sbjct: 489 SASRDRTIKLWNTLGECKYTISE---GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 379 NNPST-PIR-VIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
            N S   +R  + GH   ++ +A+SPD     +G  DG +  W+
Sbjct: 546 WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 142/332 (42%), Gaps = 43/332 (12%)
Query: 129 EHSCAVNVAKYSPSGFYIASG-----------DISGKVRIWD--TVNKE-HILKNEFHPI 174
           +H+  V   K+S  G Y+A+G           D S   R+ D    NK+   L     P 
Sbjct: 62  DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 175 GGP-IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPF 233
               I+ + +SPD + +    E  +R   ++  E    V  + G  + I S D+ PS   
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAE--DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD- 178
Query: 234 RIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGA 292
           ++++GS D T+ +++    +  +T       V  V  SP  G + A+   D  V ++D  
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 293 SADLVSELGNP-----AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG 347
           +  LV  L +       HK  VY+V +  DG  +++ S D++ KLW+++  +  S+    
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297
Query: 348 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS-----------TPIRVIKGHNKPIT 396
           N     +V+ +   D++L+V+ +    Y+   +              P+ +++GH   + 
Sbjct: 298 NS-GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356
Query: 397 ALA------LSPDRGTVFTGSHDGFITRWNAK 422
           ++A      L P+     TGS D     W  K
Sbjct: 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 25/245 (10%)
Query: 139 YSPSGFYIASGDISGKVRIWDTVNKEHILK---NEFHPIGGPIKDIAWSPDNQRMVVVGE 195
           ++P+G  +AS     ++RIW T     I K   +E H     ++ +AWSP    +     
Sbjct: 24  WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ--RTVRKVAWSPCGNYLASASF 81
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF---EGPPF 252
                      +    V  + G    + S  + PS    + T S D ++ V+   E   +
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKSVWVWEVDEEDEY 140
Query: 253 KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAV 312
           +       H++ V+ V + PS    ASA +D  V LY     D V       H+  V+++
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 200
Query: 313 AWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQG---DYLLTVSL 369
           A+ P G +L + S D+T ++W         ++L GN+   Q V+C   G    +    +L
Sbjct: 201 AFDPSGQRLASCSDDRTVRIW--------RQYLPGNE---QGVAC--SGSDPSWKCICTL 247
Query: 370 SGFIS 374
           SGF S
Sbjct: 248 SGFHS 252

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 8/209 (3%)
Query: 219 SKPINSCDFKPSRPFRIITGSE--DNTIAVF--EGPPFKFKMTKQE-HSRFVQAVRYSPS 273
           + P + C F    P   +  S   D  I ++  EG  +  K    E H R V+ V +SP 
Sbjct: 13  AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC 72
Query: 274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333
           G++ ASA FD    ++     D         H+  V +VAW P G  L T S DK+  +W
Sbjct: 73  GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 334 DIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS---GFISYLDVNNPSTPIRVIKG 390
           +++ +       + N         +W     L  S S       Y +  +       ++G
Sbjct: 133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192
Query: 391 HNKPITALALSPDRGTVFTGSHDGFITRW 419
           H   + +LA  P    + + S D  +  W
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 303 PAH-KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM--GNQVEDQQVSCLW 359
           PAH     + +AW P GT L +  GD+  ++W  E  S + + ++  G+Q   ++V+   
Sbjct: 12  PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP 71
Query: 360 QGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR 418
            G+YL + S          N      +  ++GH   + ++A +P    + T S D  +  
Sbjct: 72  CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWV 131
Query: 419 WN 420
           W 
Sbjct: 132 WE 133

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 146 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195
           + S    GK+ IWD  T NK H        ++   + P G  +       DN  +  +  
Sbjct: 70  LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 125
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 255
            + R G+V +S       E++G +  ++ C F      +I+T S D T A+++    +  
Sbjct: 126 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177
Query: 256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 315
            T   H+  V ++  +P    F S   D    L+D      +       H+  + A+ + 
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 235
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
           P+G    T S D TC+L+D+     +  +   N +         +   LL      F   
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           +     +    V+ GH+  ++ L ++ D   V TGS D F+  WN
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 146 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195
           + S    GK+ IWD  T NK H        ++   + P G  +       DN  +  +  
Sbjct: 70  LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 125
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 255
            + R G+V +S       E++G +  ++ C F      +I+T S D T A+++    +  
Sbjct: 126 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177
Query: 256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 315
            T   H+  V ++  +P    F S   D    L+D      +       H+  + A+ + 
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 235
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
           P+G    T S D TC+L+D+     +  +   N +         +   LL      F   
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           +     +    V+ GH+  ++ L ++ D   V TGS D F+  WN
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 146 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195
           + S    GK+ IWD  T NK H        ++   + P G  +       DN  +  +  
Sbjct: 81  LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 136
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 255
            + R G+V +S       E++G +  ++ C F      +I+T S D T A+++    +  
Sbjct: 137 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 188
Query: 256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 315
            T   H+  V ++  +P    F S   D    L+D      +       H+  + A+ + 
Sbjct: 189 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 246
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
           P+G    T S D TC+L+D+     +  +   N +         +   LL      F   
Sbjct: 247 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 306
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           +     +    V+ GH+  ++ L ++ D   V TGS D F+  WN
Sbjct: 307 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 13/202 (6%)
Query: 147 ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV---VGEGRERFGHV 203
           AS  +   +R+WD  N + I   +  P+      +A+SPD+Q +     VG+       +
Sbjct: 96  ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT--LAFSPDSQYLATGTHVGKVN-----I 148
Query: 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR 263
           F  E+G     +  + K I S  + P   + + +G+ D  I +F+    K   T + H+ 
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAM 207
Query: 264 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT 323
            ++++ +SP      +A  DG + +YD   A+L   L    H   V  VA+ PD T  ++
Sbjct: 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL--SGHASWVLNVAFCPDDTHFVS 265
Query: 324 ASGDKTCKLWDIETKSAVSEFL 345
           +S DK+ K+WD+ T++ V  F 
Sbjct: 266 SSSDKSVKVWDVGTRTCVHTFF 287

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 8/198 (4%)
Query: 228 KPSRPFRIITGSEDNTIAVFE--GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK 285
           K      ++TGS D+ + V++        + + + H   V +V  S +    AS+  D  
Sbjct: 44  KKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103
Query: 286 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET-KSAVSEF 344
           + L+D  +   +  +   A     + +A+ PD   L T +      ++ +E+ K   S  
Sbjct: 104 IRLWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161
Query: 345 LMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR 404
             G  +     S    G YL + ++ G I+  D+      +  ++GH  PI +L  SPD 
Sbjct: 162 TRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDS 218
Query: 405 GTVFTGSHDGFITRWNAK 422
             + T S DG+I  ++ +
Sbjct: 219 QLLVTASDDGYIKIYDVQ 236

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELGNPAHKGGVYAVAWKPDG 318
           HS+ V  +R++P G H AS G D  V ++  A  +   V       H+G V AVAW P  
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 319 TQLLTASG---DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFI-S 374
           + +L   G   D+  ++W++ + + +S     +QV     S LW   Y   +S  GF  +
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV----CSILWSPHYKELISGHGFAQN 355
Query: 375 YLDVNNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
            L +    T  +V  +KGH   + +L +SPD  TV + + D  +  W
Sbjct: 356 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELGNPAHKGGVYAVAWKPDG 318
           HS+ V  +R++P G H AS G D  V ++  A  +   V       H+G V AVAW P  
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 319 TQLLTASG---DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFI-S 374
           + +L   G   D+  ++W++ + + +S     +QV     S LW   Y   +S  GF  +
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV----CSILWSPHYKELISGHGFAQN 344
Query: 375 YLDVNNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
            L +    T  +V  +KGH   + +L +SPD  TV + + D  +  W
Sbjct: 345 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 146 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195
           + S    GK+ IWD  T NK H        ++   + P G  +       DN  +  +  
Sbjct: 70  LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 125
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 255
            + R G+V +S       E++G +  ++ C F      +I+T S D T A+++    +  
Sbjct: 126 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177
Query: 256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 315
            T   H+  V ++  +P    F S   D    L+D      +       H+  + A+ + 
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 235
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
           P+G    T S D TC+L+D+     +  +   N +         +   LL      F   
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           +     +    V+ GH+  ++ L ++ D   V TGS D F+  WN
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 24/285 (8%)
Query: 146 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMVVVGE 195
           + S    GK+ IWD  T NK H        ++   + P G  +       DN  +  +  
Sbjct: 70  LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDN--ICSIYN 125
Query: 196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK 255
            + R G+V +S       E++G +  ++ C F      +I+T S D T A+++    +  
Sbjct: 126 LKTREGNVRVSR------ELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT 177
Query: 256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK 315
            T   H+  V ++  +P    F S   D    L+D      +       H+  + A+ + 
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFF 235
Query: 316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY 375
           P+G    T S D TC+L+D+     +  +   N +         +   LL      F   
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           +     +    V+ GH+  ++ L ++ D   V TGS D F+  WN
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 123/283 (43%), Gaps = 20/283 (7%)
Query: 142 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG 201
            G  I SG     +++W  V  +  L+      GG      WS   +  +++    +R  
Sbjct: 128 CGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGG-----VWSSQMRDNIIISGSTDRTL 181
Query: 202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH 261
            V+ +ETG  +  + G +  +        R   +++GS D T+ V++    +       H
Sbjct: 182 KVWNAETGECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGH 238
Query: 262 SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL 321
              V+ V+Y   G    S  +D  V ++D  +   +  L    H   VY++ +  DG  +
Sbjct: 239 VAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTL--QGHTNRVYSLQF--DGIHV 292
Query: 322 LTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP 381
           ++ S D + ++WD+ET + +   L G+Q     +    + + L++ +    +   D+   
Sbjct: 293 VSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG 349
Query: 382 STPIRVIKGHNKPITAL-ALSPDRGTVFTGSHDGFITRWNAKT 423
              ++ ++G NK  +A+  L  ++  V T S DG +  W+ KT
Sbjct: 350 QC-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELGNPAHKGGVYAVAWKPDG 318
           HS+ V  +R++P G H AS G D  V ++  A  +   V       H+G V AVAW P  
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 319 TQLLTASG---DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFI-S 374
           + +L   G   D+  ++W++ + + +S     +QV     S LW   Y   +S  GF  +
Sbjct: 209 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV----CSILWSPHYKELISGHGFAQN 264
Query: 375 YLDVNNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHDGFITRWNA 421
            L +    T  +V  +KGH   + +L +SPD  TV + + D  +  W  
Sbjct: 265 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 120/297 (40%), Gaps = 45/297 (15%)
Query: 146 IASGDISGKVRIWD--TVNKEH--------ILKNEFHPIGGPIKDIAWSPDNQRMV--VV 193
           I S    GKV +WD  T NKEH        ++   + P G  I       DN+  V  + 
Sbjct: 79  IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIA--CGGLDNKCSVYPLT 136
Query: 194 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK 253
            +  E      M+    SV      +  +++C F  S   +I+T S D T A+++    +
Sbjct: 137 FDKNEN-----MAAKKKSVAM---HTNYLSACSFTNS-DMQILTASGDGTCALWDVESGQ 187
Query: 254 FKMTKQEHSRFVQAVRYSPS--GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYA 311
              +   H   V  +  +PS  G+ F S G D K  ++D  S   V       H+  V +
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--ETHESDVNS 245
Query: 312 VAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG 371
           V + P G    + S D TC+L+D+     V+ +   + +          G   +  SLSG
Sbjct: 246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII---------FGASSVDFSLSG 296
Query: 372 FISYLDVNN---------PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
            + +   N+           + + ++ GH   ++ L +SPD     +GS D  +  W
Sbjct: 297 RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 7/168 (4%)
Query: 191 VVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP 250
           V+V    +    V+  ETG     + G +  +    F  S    + + S D TI +++  
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL-LASCSADMTIKLWDFQ 180
Query: 251 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY 310
            F+   T   H   V +V   P+G H  SA  D  + +++  +   V       H+  V 
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVR 238
Query: 311 AVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL 358
            V    DGT + + S D+T ++W + TK   +E      V    V C+
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV----VECI 282

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 24/208 (11%)
Query: 235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 294
           I++ S D TI ++E        T   H  +V+ VR +  G+  AS   D  V ++  A+ 
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266
Query: 295 DLVSELGNPAHKGGVYAVAWKPD--------------------GTQLLTASGDKTCKLWD 334
           +  +EL    H+  V  ++W P+                    G  LL+ S DKT K+WD
Sbjct: 267 ECKAELRE--HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Query: 335 IETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP 394
           + T   +   L+G+    + V     G ++L+ +    +   D  N    ++ +  H   
Sbjct: 325 VSTGMCLMT-LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHF 382
Query: 395 ITALALSPDRGTVFTGSHDGFITRWNAK 422
           +T+L        V TGS D  +  W  +
Sbjct: 383 VTSLDFHKTAPYVVTGSVDQTVKVWECR 410

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 305 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL 364
           H+  V  V + P  + +++AS D T K+WD ET       L G+    Q +S    G  L
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
            + S    I   D       IR + GH+  ++++++ P+   + + S D  I  W  +T
Sbjct: 166 ASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 14/226 (6%)
Query: 123 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI---K 179
           I   ++  S  V    + P+  ++ +   SG+V +W+   +  +          P+   K
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQVTETPVRAGK 62
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
            IA     +  ++VG    R   VF   TG  V +       I S    P++P+ +++GS
Sbjct: 63  FIA----RKNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGS 116
Query: 240 EDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLV 297
           +D T+ ++     +  + T + H  FV  V ++P   S FAS   D  V ++    +   
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 298 SELGNPAHKGGVYAVAWK-PDGTQLLTASGDKTCKLWDIETKSAVS 342
             L     +G  Y   +  PD   ++TAS D T K+WD +TKS V+
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 14/226 (6%)
Query: 123 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI---K 179
           I   ++  S  V    + P+  ++ +   SG+V +W+   +  +          P+   K
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQVTETPVRAGK 62
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
            IA     +  ++VG    R   VF   TG  V +       I S    P++P+ +++GS
Sbjct: 63  FIA----RKNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGS 116
Query: 240 EDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLV 297
           +D T+ ++     +  + T + H  FV  V ++P   S FAS   D  V ++    +   
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 298 SELGNPAHKGGVYAVAWK-PDGTQLLTASGDKTCKLWDIETKSAVS 342
             L     +G  Y   +  PD   ++TAS D T K+WD +TKS V+
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 93/234 (39%), Gaps = 30/234 (12%)
Query: 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE--- 260
            M+E  T  G + G +  +      P  P  I++ S D TI +       +K+T+ E   
Sbjct: 23  MMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIM-------WKLTRDETNY 75
Query: 261 ---------HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYA 311
                    HS FV  V  S  G    S  +DG + L+D  +           H   V +
Sbjct: 76  GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF--VGHTKDVLS 133
Query: 312 VAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW-----QGDYLLT 366
           VA+  D  Q+++ S DKT KLW+      V ++ + ++   + VSC+          +++
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLWNTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 367 VSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
                 +   ++ N       I GH   +  + +SPD     +G  DG    W+
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 30/233 (12%)
Query: 205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE---- 260
           M+E  T  G + G +  +      P  P  I++ S D TI +       +K+T+ E    
Sbjct: 1   MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIM-------WKLTRDETNYG 53
Query: 261 --------HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAV 312
                   HS FV  V  S  G    S  +DG + L+D  +           H   V +V
Sbjct: 54  IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF--VGHTKDVLSV 111
Query: 313 AWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW-----QGDYLLTV 367
           A+  D  Q+++ S DKT KLW+      V ++ + ++   + VSC+          +++ 
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLWNTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 168
Query: 368 SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
                +   ++ N       I GH   +  + +SPD     +G  DG    W+
Sbjct: 169 GWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 8/223 (3%)
Query: 123 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 182
           I   ++  S  V    + P+  ++ +   SG+V IW+   +  +          P++   
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV--RSIQVTETPVRAGK 62
Query: 183 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN 242
           +    +  ++VG    R   VF   TG  V +       I S    P++P+ +++GS+D 
Sbjct: 63  FIA-RKNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDL 119
Query: 243 TIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSEL 300
           T+ ++     +  + T + H  FV  V ++P   S FAS   D  V ++    +     L
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 301 GNPAHKGGVYAVAWK-PDGTQLLTASGDKTCKLWDIETKSAVS 342
                +G  Y   +  PD   ++TAS D T K+WD +TKS V+
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 14/226 (6%)
Query: 123 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI---K 179
           I   ++  S  V    + P+  ++ +   SG+V +W+   +  +          P+   K
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQVTETPVRAGK 62
Query: 180 DIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS 239
            IA     +  ++VG    R   VF   TG  V +       I S    P++P+ +++GS
Sbjct: 63  FIA----RKNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGS 116
Query: 240 EDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLV 297
           +D T+ ++     +  + T + H  FV  V ++P   S FAS   D  V ++    +   
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 298 SELGNPAHKGGVYAVAWK-PDGTQLLTASGDKTCKLWDIETKSAVS 342
             L     +G  Y   +  PD   ++TAS D T K+WD +TKS V+
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 110/241 (45%), Gaps = 18/241 (7%)
Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
           HS  V+    S +G +  S      +R+W+  N +   K   H     +  +A+SPDN++
Sbjct: 66  HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHT--KDVLSVAFSPDNRQ 123
Query: 190 MVVVGEGRERFGHVFMSETGTSVGEIS--GQSKPINSCDFKPS--RPFRIITGSEDNTIA 245
             +V  GR+    V+ +  G  +  +S    +  ++   F PS   P  I++G  DN + 
Sbjct: 124 --IVSGGRDNALRVW-NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV-IVSGGWDNLVK 179
Query: 246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH 305
           V++    +     + H+ +V +V  SP GS  AS+  DG   L+D    + +SE+   A 
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM---AA 236
Query: 306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ----VEDQQVSCLWQG 361
              +  + + P+    + A+ +K  +++D+E K  + E    +Q    +  + VS  W  
Sbjct: 237 GAPINQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSA 295
Query: 362 D 362
           D
Sbjct: 296 D 296

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 22/224 (9%)
Query: 213 GEISGQSKPINS--CDFKPSRPFRIITGSEDNTIAVFEGPPFKFK---------MTKQEH 261
           G+++G    + S  C   P    ++++ S D T+  +   P +              + H
Sbjct: 7   GQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGH 66
Query: 262 SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL 321
           S FV  V  S +G+   SA +D  + L++  +     +     H   V +VA+ PD  Q+
Sbjct: 67  SAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF--LGHTKDVLSVAFSPDNRQI 124
Query: 322 LTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDYLLTVSLSGFISYLDV 378
           ++   D   ++W+++ +       +        VSC+      D  + VS  G+ + + V
Sbjct: 125 VSGGRDNALRVWNVKGECM---HTLSRGAHTDWVSCVRFSPSLDAPVIVS-GGWDNLVKV 180
Query: 379 NNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
            + +T   V  +KGH   +T++ +SPD     +   DG    W+
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 120/296 (40%), Gaps = 40/296 (13%)
Query: 145 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM-VVVGEGRERFGHV 203
           Y+ +G     +R++D++NK+ +L+   H  G       W+       ++V    +R   V
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGG------VWALKYAHGGILVSGSTDRTVRV 187
Query: 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFR-IITGSEDNTIAVFEGP------------ 250
           +  + G       G +  +   D    +  + I+TGS DNT+ V++ P            
Sbjct: 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Query: 251 --PFKFKMTKQEHSRFVQAVR--------YSPSGSHFASAGFDGKVFLYDGASADLVSEL 300
             P  F  T +E+  FV  +R         S  G+   S  +D  + ++D A    +  L
Sbjct: 248 DYPLVFH-TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 306
Query: 301 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ 360
               H   +Y+  +  +  + ++AS D T ++WD+E      E +   Q     V  L  
Sbjct: 307 --SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN----GELMYTLQGHTALVGLLRL 360
Query: 361 GD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF 415
            D +L++ +  G I   D N+ S        +   IT   +S +   + +GS + F
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN--ILVSGSENQF 414

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP------PFKFK-MTKQEHSRFVQA 267
           + G + P+    + P     I +GSED T+ V+E P      P +   +T + H++ V  
Sbjct: 77  VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 268 VRYSPSGSH-FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG 326
           V + P+  +   SAG D  + ++D  +   V  LG   H   +Y+V W  DG  + T+  
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 327 DKTCKLWDIETKSAVSE 343
           DK  ++ +    + V+E
Sbjct: 197 DKRVRVIEPRKGTVVAE 213

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 11/173 (6%)
Query: 182 AWSPDNQRMVVVGEGRERFGHVFMSETG---TSVGEISGQSKPINSCDFKPSRPFRIITG 238
           A +P    ++    G   F  + + +TG    +V  + G + P+    + P     I +G
Sbjct: 41  AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASG 100
Query: 239 SEDNTIAVFEGP------PFKFK-MTKQEHSRFVQAVRYSPSGSH-FASAGFDGKVFLYD 290
           SED T+ V+E P      P +   +T + H++ V  V + P+  +   SAG D  + ++D
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160
Query: 291 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE 343
             +   V  LG   H   +Y+V W  DG  + T+  DK  ++ +    + V+E
Sbjct: 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 13/188 (6%)
Query: 235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS- 293
           IITGS D+T+ V++    +   T   H   V  +R++       +   D  + ++D AS 
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASP 243
Query: 294 ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ 353
            D+        H+  V  V +  D   +++ASGD+T K+W+  T     EF+       +
Sbjct: 244 TDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST----CEFVRTLNGHKR 297
Query: 354 QVSCLWQGDYLLTV-SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH 412
            ++CL   D L+   S    I   D+   +  +RV++GH + +  +    D   + +G++
Sbjct: 298 GIACLQYRDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF--DNKRIVSGAY 354
Query: 413 DGFITRWN 420
           DG I  W+
Sbjct: 355 DGKIKVWD 362

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 119/296 (40%), Gaps = 40/296 (13%)
Query: 145 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM-VVVGEGRERFGHV 203
           Y+ +G     +R++D++NK+ +L+   H  G       W+       ++V    +R   V
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGG------VWALKYAHGGILVSGSTDRTVRV 187
Query: 204 FMSETGTSVGEISGQSKPINSCDFKPSRPFR-IITGSEDNTIAVFEGP------------ 250
           +  + G       G +  +   D    +  + I+TGS DNT+ V++ P            
Sbjct: 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Query: 251 --PFKFKMTKQEHSRFVQAVR--------YSPSGSHFASAGFDGKVFLYDGASADLVSEL 300
             P  F  T +E+  FV  +R         S  G+   S  +D  + ++D A    +  L
Sbjct: 248 DYPLVFH-TPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYIL 306
Query: 301 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ 360
               H   +Y+  +  +  + ++AS D T ++WD+E      E     Q     V  L  
Sbjct: 307 --SGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN----GELXYTLQGHTALVGLLRL 360
Query: 361 GD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF 415
            D +L++ +  G I   D N+ S        +   IT   +S +   + +GS + F
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN--ILVSGSENQF 414

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 267
           G + G +  + S      +P  +++ S D T+  ++  G   KF +   + + HS  VQ 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
              +  G++  SA +D  + L+D A+ +         HK  V +V      + +++ S D
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRD 128
Query: 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL---WQGDYLLTVSLSG---FISYLDVNNP 381
           KT K+W I+ +   +  L+G+     QV  +      D  +T+  +G    +   ++N  
Sbjct: 129 KTIKVWTIKGQCLAT--LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
                 I GHN  I  L  SPD   + +   DG I  WN
Sbjct: 187 QIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 267
           G + G +  + S      +P  +++ S D T+  ++  G   KF +   + + HS  VQ 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
              +  G++  SA +D  + L+D A+ +         HK  V +V      + +++ S D
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRD 128
Query: 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL---WQGDYLLTVSLSG---FISYLDVNNP 381
           KT K+W I+ +   +  L+G+     QV  +      D  +T+  +G    +   ++N  
Sbjct: 129 KTIKVWTIKGQCLAT--LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
                 I GHN  I  L  SPD   + +   DG I  WN
Sbjct: 187 QIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 267
           G + G +  + S      +P  +++ S D T+  ++  G   KF +   + + HS  VQ 
Sbjct: 5   GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
              +  G++  SA +D  + L+D A+ +         HK  V +V      + +++ S D
Sbjct: 65  CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRD 122
Query: 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL---WQGDYLLTVSLSG---FISYLDVNNP 381
           KT K+W I+ +   +  L+G+     QV  +      D  +T+  +G    +   ++N  
Sbjct: 123 KTIKVWTIKGQCLAT--LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
                 I GHN  I  L  SPD   + +   DG I  WN
Sbjct: 181 QIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 218

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 267
           G + G +  + S      +P  +++ S D T+  ++  G   KF +   + + HS  VQ 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
              +  G++  SA +D  + L+D A+ +         HK  V +V      + +++ S D
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRD 128
Query: 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL---WQGDYLLTVSLSG---FISYLDVNNP 381
           KT K+W I+ +   +  L+G+     QV  +      D  +T+  +G    +   ++N  
Sbjct: 129 KTIKVWTIKGQCLAT--LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
                 I GHN  I  L  SPD   + +   DG I  WN
Sbjct: 187 QIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 267
           G + G +  + S      +P  +++ S D T+  ++  G   KF +   + + HS  VQ 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
              +  G++  SA +D  + L+D A+ +         HK  V +V      + +++ S D
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRD 128
Query: 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL---WQGDYLLTVSLSG---FISYLDVNNP 381
           KT K+W I+ +   +  L+G+     QV  +      D  +T+  +G    +   ++N  
Sbjct: 129 KTIKVWTIKGQCLAT--LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
                 I GHN  I  L  SPD   + +   DG I  WN
Sbjct: 187 QIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE--GPPFKFKM---TKQEHSRFVQA 267
           G + G +  + S      +P  +++ S D T+  ++  G   KF +   + + HS  VQ 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 268 VRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD 327
              +  G++  SA +D  + L+D A+ +         HK  V +V      + +++ S D
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGETYQRF--VGHKSDVXSVDIDKKASXIISGSRD 128
Query: 328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL---WQGDYLLTVSLSG---FISYLDVNNP 381
           KT K+W I+ +   +  L+G+     QV  +      D  +T+  +G    +   ++N  
Sbjct: 129 KTIKVWTIKGQCLAT--LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQF 186
Query: 382 STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
                 I GHN  I  L  SPD   + +   DG I  WN
Sbjct: 187 QIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWN 224

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 109/270 (40%), Gaps = 32/270 (11%)
Query: 178 IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIIT 237
           + D+A S +N     +    ++   ++   TGT+     G    + S  F P    +I++
Sbjct: 79  VSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILS 135
Query: 238 GSEDNTIAVFE--GPPFKFKMTKQEHSRFVQAVRYSPS----------GSHFASAGFDGK 285
              +  I ++   G        K+ HS +V  VRYSP             +FAS G+DG+
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 286 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS-AVSEF 344
           + +++    +        AH+  V  ++  P+G  + T   DK   +WDI   +    EF
Sbjct: 196 LKVWN---TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF 252
Query: 345 LMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI-----------KGHNK 393
             G+ +   Q++   +  ++   +  G   +  +     P+  I           KG N 
Sbjct: 253 DAGSTI--NQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP 310
Query: 394 PITALALSPDRGTVFTGSHDGFITRWNAKT 423
             T+LA +     +F G  DG I  ++ +T
Sbjct: 311 QCTSLAWNALGKKLFAGFTDGVIRTFSFET 340

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Query: 273 SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKL 332
           S  +  +   +  V++++  S   VS L        V +V W  DG+ L    G+    +
Sbjct: 102 SNLNVVAVALERNVYVWNADSGS-VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160
Query: 333 WDIETKSAVSEFLMGNQVEDQQVSCL-WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH 391
           +D+E+++ +   + G+Q    +V CL W    L + S SG I + DV   +  I  ++GH
Sbjct: 161 YDVESQTKL-RTMAGHQA---RVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216
Query: 392 NKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           +  +  LA   D   + +G +D  +  W+A++
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 15/163 (9%)
Query: 274 GSHFASAGFDGKVFLYDGA--------SADLVSELGNP---AHKGGVYAVAWKPDGTQLL 322
           G +  S G DG + LYD          +   V  +G      H+  V  V W P  T + 
Sbjct: 56  GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115
Query: 323 TASG-DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG-FISYLDVNN 380
           T+S  DKT K+WD  T      F     V    +S +     L+ V   G  +   D+ +
Sbjct: 116 TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175
Query: 381 PSTPIRVIKGHNKPITALALSPDRGTVF-TGSHDGFITRWNAK 422
            S    +++GH + I A++ SP    +  T S D  +  W+ +
Sbjct: 176 GSCS-HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 22/213 (10%)
Query: 145 YIASGDISGKVRIWD--TVNKEHIL---KNEFHPIGGPIKDIAWSPDNQRMV--VVGEGR 197
           Y+ S      + +WD     KEH +   KN F      ++D+AW   ++ +   V  + +
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 257
                   + T      +   +  +N   F P   F + TGS D T+A+++    K K+ 
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 317
Query: 258 KQE-HSRFVQAVRYSPSGSH-FASAGFDGKVFLYD-----GASADLVSELGNP------- 303
             E H   +  V++SP      AS+G D ++ ++D        +   +E G P       
Sbjct: 318 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 377
Query: 304 AHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDI 335
            H   +   +W P+   ++ + S D   ++W +
Sbjct: 378 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 22/213 (10%)
Query: 145 YIASGDISGKVRIWD--TVNKEHIL---KNEFHPIGGPIKDIAWSPDNQRMV--VVGEGR 197
           Y+ S      + +WD     KEH +   KN F      ++D+AW   ++ +   V  + +
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 257
                   + T      +   +  +N   F P   F + TGS D T+A+++    K K+ 
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 258 KQE-HSRFVQAVRYSPSGSH-FASAGFDGKVFLYD-----GASADLVSELGNP------- 303
             E H   +  V++SP      AS+G D ++ ++D        +   +E G P       
Sbjct: 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375
Query: 304 AHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDI 335
            H   +   +W P+   ++ + S D   ++W +
Sbjct: 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 22/213 (10%)
Query: 145 YIASGDISGKVRIWD--TVNKEHIL---KNEFHPIGGPIKDIAWSPDNQRMV--VVGEGR 197
           Y+ S      + +WD     KEH +   KN F      ++D+AW   ++ +   V  + +
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 257
                   + T      +   +  +N   F P   F + TGS D T+A+++    K K+ 
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 258 KQE-HSRFVQAVRYSPSGSH-FASAGFDGKVFLYD-----GASADLVSELGNP------- 303
             E H   +  V++SP      AS+G D ++ ++D        +   +E G P       
Sbjct: 320 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 379
Query: 304 AHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDI 335
            H   +   +W P+   ++ + S D   ++W +
Sbjct: 380 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 96/257 (37%), Gaps = 47/257 (18%)
Query: 115 IRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHP 173
           +RN     I+D+         VA   P  G  +AS     KV IW   N      +E   
Sbjct: 42  VRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAG 101
Query: 174 IGGPIKDIAWSPDNQRMVVV--------------GEGRERFGHVFMSET----------- 208
               +  + W+P +  +++               GEG+     +  + T           
Sbjct: 102 HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA 161
Query: 209 ---GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF---EGPPFKFKMTKQEHS 262
              G+ +   SGQ         KP+   R  +G  DN I ++   E   +K +   + HS
Sbjct: 162 VVPGSLIDHPSGQ---------KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS 212
Query: 263 RFVQAVRYSPS----GSHFASAGFDGKVFLY--DGASADLVSELGNPAHKGGVYAVAWKP 316
            +V+ V ++PS     S  AS   DG+VF++  D AS++  S          V+ V+W  
Sbjct: 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI 272
Query: 317 DGTQLLTASGDKTCKLW 333
               L  + GD    LW
Sbjct: 273 TANILAVSGGDNKVTLW 289

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 21/186 (11%)
Query: 119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK-EHILKNEFHPIGGP 177
           E P    I  E   A  VA +S  G YI +G   GK+  +D  N  E++   + H     
Sbjct: 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE--KS 220
Query: 178 IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT-SVGEISGQSKPINSCDFKPSRPFRII 236
           I D+ +SPD    +       R  + F+ +  T  V +      P+N+    P + F I+
Sbjct: 221 ISDMQFSPDLTYFIT----SSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIIL 276
Query: 237 TGSED----NTIAVFEG---PPFKFKMTKQEHSRF------VQAVRYSPSGSHFASAGFD 283
            G ++     T +  EG     F  K+ ++E  R       +  V  SP G+ +AS G D
Sbjct: 277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336
Query: 284 GKVFLY 289
           G + L+
Sbjct: 337 GFIRLH 342

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 305 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAV 341
           H G V  V W  DG+++ TAS DKT K+WD+ +  A+
Sbjct: 85  HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	423
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.97
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.8
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.79
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.7
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.65
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.64
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.6
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.59
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.57
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.55
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.55
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.54
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.53
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.53
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.48
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.43
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.41
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.41
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.39
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.39
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.37
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.31
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.31
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.29
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.26
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.26
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.24
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.23
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.21
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.2
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.2
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.18
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.17
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.13
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.13
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.13
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.11
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.07
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.05
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.05
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.98
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.97
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.96
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.95
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.93
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.9
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.85
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.82
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.77
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.76
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.71
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.71
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.64
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.64
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.62
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.57
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.53
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.51
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.49
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.48
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.46
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.44
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.4
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.4
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.34
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.29
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.27
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.26
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.24
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.23
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.22
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.2
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.2
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.17
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.16
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.16
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.16
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.16
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.15
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.09
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.08
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.08
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.07
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.98
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.94
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.94
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.89
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.88
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.84
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.81
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.72
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.67
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.67
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.65
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.58
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.58
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.57
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.54
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.54
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.48
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.28
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.24
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.13
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.08
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.04
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.92
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.8
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.69
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.47
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.43
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.32
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.07
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.03
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.92
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.4
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.14
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.75
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.7
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.67
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.49
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.37
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.03
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.62
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.77
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.08
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.08
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	91.99
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.83
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.83
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.02
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.01
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.79
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.12
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.64
3ott_A	758	Two-component system sensor histidine kinase; beta	87.61
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	86.48
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	85.2
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	84.71
3ott_A	758	Two-component system sensor histidine kinase; beta	84.63
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.6
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	81.81
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	80.5
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	80.24
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.16

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.4e-55  Score=434.71  Aligned_cols=408  Identities=17%  Similarity=0.201  Sum_probs=323.3

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc--eeecc
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY--IFATL   85 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~--~~~~~   85 (423)
                      ..++++|||++||+++ ++.|++||+.+ .+...+|++|.++|++++|+|++++||||+.|++|++||++++.  +...+
T Consensus        22 ~~~~~spdg~~l~~~~-~~~v~l~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~   99 (611)
T 1nr0_A           22 VVLGNTPAGDKIQYCN-GTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI   99 (611)
T ss_dssp             CCCEECTTSSEEEEEE-TTEEEEEETTC-SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred             eEEeeCCCCCEEEeCC-CCEEEEecCCC-cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee
Confidence            4677888999999987 57999999975 45677899999999999999999999999999999999997543  22233


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCC---eEEEEecCCCcccccccCCcceEEEEEECCCCC-EEEEEccCCcEEEEEcC
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGN---SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTV  161 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~~~d~~i~vwd~~  161 (423)
                      . .+.+....+.++|+++.++.....   ...++.++.+.....+.+|...|++++|+|++. +|++++.|++|++||..
T Consensus       100 ~-~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~  178 (611)
T 1nr0_A          100 P-VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP  178 (611)
T ss_dssp             E-CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred             c-ccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence            2 234566678999999988876532   233444445667788999999999999999987 69999999999999987


Q ss_pred             CCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc-------CCCcceeEEEEecCCCee
Q psy13076        162 NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS-------GQSKPINSCDFKPSRPFR  234 (423)
Q Consensus       162 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~  234 (423)
                      ..+..  ..+..+...|.+++|+|+++.+++++.+.  ..++|+..++..+..+.       +|...|.+++|+|++.+ 
T Consensus       179 ~~~~~--~~l~~H~~~V~~v~fspdg~~las~s~D~--~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-  253 (611)
T 1nr0_A          179 PFKFK--STFGEHTKFVHSVRYNPDGSLFASTGGDG--TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-  253 (611)
T ss_dssp             TBEEE--EEECCCSSCEEEEEECTTSSEEEEEETTS--CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE-
T ss_pred             CCeEe--eeeccccCceEEEEECCCCCEEEEEECCC--cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE-
Confidence            65543  34556778999999999999988877554  45788877777766653       68899999999999875 


Q ss_pred             EEEEeCCCeEEEEcCCCceee-------------------------------------------eeccccccCeEEEEEC
Q psy13076        235 IITGSEDNTIAVFEGPPFKFK-------------------------------------------MTKQEHSRFVQAVRYS  271 (423)
Q Consensus       235 ~~s~s~d~~i~~~~~~~~~~~-------------------------------------------~~~~~~~~~i~~l~~s  271 (423)
                      +++++.|++|++||....+..                                           ....+|...|++++|+
T Consensus       254 l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s  333 (611)
T 1nr0_A          254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS  333 (611)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe
Confidence            899999999999997654322                                           1234688899999999


Q ss_pred             CCCCEEEEEEecCeEEEEECCCccceecccc-------------------------------------------------
Q psy13076        272 PSGSHFASAGFDGKVFLYDGASADLVSELGN-------------------------------------------------  302 (423)
Q Consensus       272 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------------------------------------------------  302 (423)
                      |+|++|++++.|+.|++||..+++....+..                                                 
T Consensus       334 pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~  413 (611)
T 1nr0_A          334 ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ  413 (611)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCC
Confidence            9999999999999999999876543222100                                                 


Q ss_pred             -------------------------------cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeE
Q psy13076        303 -------------------------------PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVE  351 (423)
Q Consensus       303 -------------------------------~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~  351 (423)
                                                     ..|...+.+++|+|+|++|++|+.|++|++||+.++.........+...
T Consensus       414 ~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~  493 (611)
T 1nr0_A          414 PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE  493 (611)
T ss_dssp             EEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSC
T ss_pred             CcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCc
Confidence                                           0123456789999999999999999999999998764321111233344


Q ss_pred             eeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEE--eccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        352 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       352 ~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      ...+.++|+|++|++++.|+.+++|+..+.......  +.+|..+|++++|+||+++|+|||.|++|++||+++
T Consensus       494 v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~  567 (611)
T 1nr0_A          494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  567 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence            566778889999999999999999999873332222  345999999999999999999999999999999853

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-54  Score=430.92  Aligned_cols=407  Identities=15%  Similarity=0.169  Sum_probs=322.0

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCC-ceeecccccCceeEEEEeCCCCeEEEecCC----CceEEeecCCccee
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPST-PIRVIKGHNKPITALALSPDRGTVFTGSHD----GFITRWNAKTEYIF   82 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D----~~i~vW~~~~~~~~   82 (423)
                      .+++++|||++||+|+.||.|+|||+.+... ....+.+|.++|.+++|+|++++|++++.|    ++|++||.  +...
T Consensus        63 ~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~  140 (611)
T 1nr0_A           63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSN  140 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBC
T ss_pred             EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCc
Confidence            3567778999999999999999999865333 345788999999999999999999998875    47888885  3333


Q ss_pred             ecccCCCCCCceEEeeCCCCCe-EEE-ecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEc
Q psy13076         83 ATLPRTQRGQPIVLGGDPKGKN-FLY-TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT  160 (423)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~  160 (423)
                      ..+.. +......+.++|++.. ++. +.+..+++|+.++.++...+.+|...|++++|+|+|++||+++.|++|++||.
T Consensus       141 ~~l~g-h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~  219 (611)
T 1nr0_A          141 GNLTG-QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG  219 (611)
T ss_dssp             BCCCC-CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ceecC-CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence            44432 3445667889998864 444 45789999999988888999999999999999999999999999999999999


Q ss_pred             CCCceeEEeee-----cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce-----------------------
Q psy13076        161 VNKEHILKNEF-----HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV-----------------------  212 (423)
Q Consensus       161 ~~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  212 (423)
                      .+++.......     ..+.+.|.+++|+|+++.+++++.+.  ..++|+..++..+                       
T Consensus       220 ~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~--~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  297 (611)
T 1nr0_A          220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK--TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL  297 (611)
T ss_dssp             TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS--EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred             CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC--eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence            87765433211     14678999999999999998887543  4566765544322                       


Q ss_pred             --------------------ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec--------------
Q psy13076        213 --------------------GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK--------------  258 (423)
Q Consensus       213 --------------------~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~--------------  258 (423)
                                          ..+.+|...|.+++|+|++.+ +++++.|++|++|+..........              
T Consensus       298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s  376 (611)
T 1nr0_A          298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT  376 (611)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred             EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence                                234578889999999999875 899999999999986532211100              


Q ss_pred             --------------------------------------------------------------------cccccCeEEEEE
Q psy13076        259 --------------------------------------------------------------------QEHSRFVQAVRY  270 (423)
Q Consensus       259 --------------------------------------------------------------------~~~~~~i~~l~~  270 (423)
                                                                                          ..+...+.+++|
T Consensus       377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~  456 (611)
T 1nr0_A          377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL  456 (611)
T ss_dssp             TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred             CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence                                                                                001234678999


Q ss_pred             CCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC-cceeee-eeeCc
Q psy13076        271 SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET-KSAVSE-FLMGN  348 (423)
Q Consensus       271 s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~-~~~i~~-~~~~~  348 (423)
                      +|+|++|++|+.|+.|++||..++....... ..|...|.+++|+|+|++|++++.|++|++||+.+ ++++.. ....+
T Consensus       457 spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H  535 (611)
T 1nr0_A          457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH  535 (611)
T ss_dssp             CTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred             eCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec
Confidence            9999999999999999999987754321111 46889999999999999999999999999999987 554433 12224


Q ss_pred             eeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCce-EEeccC-CCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        349 QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI-RVIKGH-NKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       349 ~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~h-~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      ......+.++|+|++|++++.|+.|++|++.++.... ..+.+| ...|++++|+|+++ |+|+|.|++|++|++.
T Consensus       536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          536 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            4455667778899999999999999999998866444 677899 89999999999998 9999999999999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.1e-51  Score=403.19  Aligned_cols=392  Identities=23%  Similarity=0.376  Sum_probs=327.6

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      .+++.+||.++++++.||.|++||..  .+.+..+.+|.++|.+++|+|++++|++++.|+.|++||.+. +.+..+.. 
T Consensus       185 ~~~~~~~~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~~~~~-  260 (577)
T 2ymu_A          185 GVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG-  260 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEECC-
T ss_pred             eeeecCCCCEEEEEcCCCEEEEEeCC--CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEEec-
Confidence            45556699999999999999999964  567788999999999999999999999999999999999764 34444432 


Q ss_pred             CCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL  167 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~  167 (423)
                      +......+.++|+++.++.. .+..+++|+.+ ++....+.+|...|.+++|+|+++++++++.|++|++||......  
T Consensus       261 ~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~--  337 (577)
T 2ymu_A          261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL--  337 (577)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE--
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee--
Confidence            23445567889999888765 46789999964 566777889999999999999999999999999999999765432  


Q ss_pred             EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076        168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF  247 (423)
Q Consensus       168 ~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~  247 (423)
                       ..+..+..++.+++|+|+++.+++++.+.  ...+|. ..+..+..+..|...|.+++|+|++.+ +++++.|+.|++|
T Consensus       338 -~~~~~~~~~v~~~~~s~~g~~l~~~~~dg--~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~  412 (577)
T 2ymu_A          338 -QTLTGHSSSVWGVAFSPDGQTIASASDDK--TVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLW  412 (577)
T ss_dssp             -EEECCCSSCEEEEEECTTSSEEEEEETTS--EEEEEE-TTCCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEE
T ss_pred             -EEEeCCCCCEEEEEECCCCCEEEEEeCCC--EEEEEc-CCCCEEEEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEEE
Confidence             23345567899999999999988876543  345565 356667778889999999999999886 8899999999999


Q ss_pred             cCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      +.. .+....+..|...|++++|+|++++|++++.|+.|++||. +++.+..+  ..|...|.+++|+|++++|++++.|
T Consensus       413 ~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~--~~~~~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          413 NRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTL--TGHSSSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             CTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEE--ECCSSCEEEEEECTTSCEEEEEETT
T ss_pred             eCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEE--cCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            954 4555667789999999999999999999999999999996 45555555  3688999999999999999999999


Q ss_pred             CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeE
Q psy13076        328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV  407 (423)
Q Consensus       328 ~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l  407 (423)
                      ++|++||. +++++..+.. +......+.++++|++|++++.|+.|++||..  ...+..+.+|..+|++++|+||+++|
T Consensus       489 ~~i~iw~~-~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~--~~~~~~~~~h~~~v~~~~fs~dg~~l  564 (577)
T 2ymu_A          489 KTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTI  564 (577)
T ss_dssp             SEEEEEET-TSCEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             CEEEEEcC-CCCEEEEEeC-CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC--CCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            99999995 5666666643 33345567778899999999999999999963  35678899999999999999999999


Q ss_pred             EEecCCCcEEEee
Q psy13076        408 FTGSHDGFITRWN  420 (423)
Q Consensus       408 ~s~s~D~~i~~W~  420 (423)
                      +|+|.|++|++||
T Consensus       565 ~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          565 ASASSDKTVKLWN  577 (577)
T ss_dssp             EEEETTSCEEEEC
T ss_pred             EEEeCCCEEEEeC
Confidence            9999999999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1e-49  Score=393.29  Aligned_cols=394  Identities=23%  Similarity=0.377  Sum_probs=316.5

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      +++++|||++||+|+.||.|++||..  .+++.+|+||.++|++++|+|++++|+|++.|++|++||.+. +.+..+..+
T Consensus        21 ~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~-~~~~~~~~~   97 (577)
T 2ymu_A           21 GVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGH   97 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC-CEEEEEECC
Confidence            56777899999999999999999963  577889999999999999999999999999999999999754 333332211


Q ss_pred             CCCCce--------------------------------------------------------------------------
Q psy13076         89 QRGQPI--------------------------------------------------------------------------   94 (423)
Q Consensus        89 ~~~~~~--------------------------------------------------------------------------   94 (423)
                       .+...                                                                          
T Consensus        98 -~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (577)
T 2ymu_A           98 -SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL  176 (577)
T ss_dssp             -SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE
T ss_pred             -CCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeec
Confidence             11111                                                                          


Q ss_pred             --------EEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076         95 --------VLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        95 --------~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                              .+.+.|+++.++.. .+..+++|+. +++....+.+|...|.+++|+|+++++++++.|+.|++||... +.
T Consensus       177 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~  254 (577)
T 2ymu_A          177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL  254 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CE
T ss_pred             cCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE
Confidence                    12334444444443 3456778874 4566677889999999999999999999999999999999643 33


Q ss_pred             eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076        166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA  245 (423)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~  245 (423)
                      .  ..+..+..+|.+++|+|+++.+++++.+..  ..+|.. .+..+..+.+|...|.+++|+|++.. +++++.|+.++
T Consensus       255 ~--~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~--i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~~~d~~i~  328 (577)
T 2ymu_A          255 L--QTLTGHSSSVNGVAFRPDGQTIASASDDKT--VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVK  328 (577)
T ss_dssp             E--EEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEET-TSCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEE
T ss_pred             E--EEEecCCCCEEEEEEcCCCCEEEEEeCCCE--EEEEeC-CCcEEEEEecCCCCeEEEEECCCCCE-EEEEeCCCeEE
Confidence            2  234456788999999999999888776543  445653 45666778889999999999999875 88999999999


Q ss_pred             EEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076        246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS  325 (423)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s  325 (423)
                      +|+..... ......|...+.+++|+|+|+++++++.||.|++||. +++.+..+  .+|...|.+++|+|++++|++++
T Consensus       329 ~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~--~~~~~~v~~~~~s~dg~~l~~~~  404 (577)
T 2ymu_A          329 LWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL--TGHSSSVRGVAFSPDGQTIASAS  404 (577)
T ss_dssp             EEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEE--ECCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEe--cCCCCCeEEEEECCCCCEEEEEe
Confidence            99976543 3456678889999999999999999999999999995 55666555  36889999999999999999999


Q ss_pred             CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCC
Q psy13076        326 GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG  405 (423)
Q Consensus       326 ~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~  405 (423)
                      .|++|++||. +++.+..+.. +......+.+.+++.+|++++.++.+++||...  ..+..+.+|..+|++++|+|+++
T Consensus       405 ~d~~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~  480 (577)
T 2ymu_A          405 DDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQ  480 (577)
T ss_dssp             TTSEEEEECT-TCCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSC
T ss_pred             CCCEEEEEeC-CCCEEEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcCCCC
Confidence            9999999996 4555555532 233444566778999999999999999999643  45678899999999999999999


Q ss_pred             eEEEecCCCcEEEeeCC
Q psy13076        406 TVFTGSHDGFITRWNAK  422 (423)
Q Consensus       406 ~l~s~s~D~~i~~W~~~  422 (423)
                      +|++++.|++|++||..
T Consensus       481 ~las~~~d~~i~iw~~~  497 (577)
T 2ymu_A          481 TIASASDDKTVKLWNRN  497 (577)
T ss_dssp             EEEEEETTSEEEEEETT
T ss_pred             EEEEEeCCCEEEEEcCC
Confidence            99999999999999964

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.1e-47  Score=375.86  Aligned_cols=403  Identities=15%  Similarity=0.168  Sum_probs=314.5

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCC---CceeecccccCc-eeEEEEeC--CCCeEEEecCCCceEEeecCCc--
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPS---TPIRVIKGHNKP-ITALALSP--DRGTVFTGSHDGFITRWNAKTE--   79 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~---~~~~~~~gh~~~-V~~l~~~~--~~~~l~sg~~D~~i~vW~~~~~--   79 (423)
                      .++++++||++|++++ ++.|++||+.++.   ++...+.+|.++ |++++|+|  ++++|++|+.||+|++||+.++  
T Consensus        22 ~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~  100 (615)
T 1pgu_A           22 THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE  100 (615)
T ss_dssp             CCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred             eEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc
Confidence            3577888999999988 8999999998641   567789999999 99999999  9999999999999999999754  


Q ss_pred             ------ceeecccCCCCCCceEEeeCCCCCeEEEecCC-----eEEEEecCCCcccccccCCcceEEEEEECCCCC-EEE
Q psy13076         80 ------YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGN-----SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF-YIA  147 (423)
Q Consensus        80 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~  147 (423)
                            .....+.. .......+.++|+++.++.....     .+.+|+  .+.....+.+|...|.+++|+|+++ +++
T Consensus       101 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  177 (615)
T 1pgu_A          101 SNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSM  177 (615)
T ss_dssp             GTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred             cccccccccchhhc-ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEE
Confidence                  44444432 34456678899999988876543     555555  6677888899999999999999998 899


Q ss_pred             EEccCCcEEEEEcCCCceeEEeeecCCCC---CeeEEEECCC-CCeEEEEEcCCceeeEEEeecCCcceecc-c---CCC
Q psy13076        148 SGDISGKVRIWDTVNKEHILKNEFHPIGG---PIKDIAWSPD-NQRMVVVGEGRERFGHVFMSETGTSVGEI-S---GQS  219 (423)
Q Consensus       148 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~v~~v~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~  219 (423)
                      +++.|+.|++||..+.+...  .+..+..   +|.+++|+|+ ++.+++++.+.  ...+|+..+++.+..+ .   .|.
T Consensus       178 ~~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~  253 (615)
T 1pgu_A          178 TVGDDGSVVFYQGPPFKFSA--SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR--KISCFDGKSGEFLKYIEDDQEPVQ  253 (615)
T ss_dssp             EEETTTEEEEEETTTBEEEE--EECSSSCTTCCEEEEEECSTTCCEEEEEETTC--CEEEEETTTCCEEEECCBTTBCCC
T ss_pred             EEeCCCcEEEEeCCCcceee--eecccCCCCceEEEEEECCCCCCEEEEEeCCC--eEEEEECCCCCEeEEecccccccC
Confidence            99999999999988766543  3444556   8999999999 99888877543  3578888888888877 5   888


Q ss_pred             cceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee------------------------------------------
Q psy13076        220 KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT------------------------------------------  257 (423)
Q Consensus       220 ~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~------------------------------------------  257 (423)
                      ..|.++.|+ ++. .+++++.|+.+++|+....+....                                          
T Consensus       254 ~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  331 (615)
T 1pgu_A          254 GGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV  331 (615)
T ss_dssp             SCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred             CceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence            999999999 665 488999999999998654322111                                          


Q ss_pred             ---ccccccC---------------------------------eEEEEECCCCCEEEEEEe-------------------
Q psy13076        258 ---KQEHSRF---------------------------------VQAVRYSPSGSHFASAGF-------------------  282 (423)
Q Consensus       258 ---~~~~~~~---------------------------------i~~l~~s~~g~~l~s~s~-------------------  282 (423)
                         +..|...                                 |.+++| +++.++++++.                   
T Consensus       332 ~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  410 (615)
T 1pgu_A          332 LKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPK  410 (615)
T ss_dssp             EEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred             EEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCce
Confidence               1122222                                 333333 22334444444                   


Q ss_pred             -------------------------------------------------------cCeEEEEECCCccceecccccccCC
Q psy13076        283 -------------------------------------------------------DGKVFLYDGASADLVSELGNPAHKG  307 (423)
Q Consensus       283 -------------------------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~  307 (423)
                                                                             ||.|++||..+++... .....|..
T Consensus       411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~  489 (615)
T 1pgu_A          411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRA  489 (615)
T ss_dssp             EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSS
T ss_pred             EEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCCccC
Confidence                                                                   4444444444433221 22245888


Q ss_pred             CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEe----------cCcEEEEEeCCCcEEEEe
Q psy13076        308 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW----------QGDYLLTVSLSGFISYLD  377 (423)
Q Consensus       308 ~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~----------~g~~l~~~~~~~~i~~~~  377 (423)
                      .|.+++|+|++++|++++.|+.|++||+.+++.+..+...+......+.+.+          ++.+|++++.|+.|++|+
T Consensus       490 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~  569 (615)
T 1pgu_A          490 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS  569 (615)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred             ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence            9999999999999999999999999999999888776532444556677778          899999999999999999


Q ss_pred             cCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        378 VNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       378 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      +.+...++..+.+|..+|++++|+|+++ |++++.|+.|++|++++
T Consensus       570 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          570 VKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             SSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             CCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            9987677888999999999999999999 99999999999999874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-47  Score=393.50  Aligned_cols=404  Identities=11%  Similarity=0.124  Sum_probs=297.9

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      .++++++||++||+|+.||.|++||... .+.... ..|..+|.+++|+| +++|+|++.|++|++||+++++++..+. 
T Consensus        21 ~~lafspdg~~lAsgs~Dg~I~lw~~~~-~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-   96 (902)
T 2oaj_A           21 IAAAFDFTQNLLAIATVTGEVHIYGQQQ-VEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-   96 (902)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEECSTT-CEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCC-cEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence            4567778999999999999999999764 233323 35889999999999 8899999999999999999988877764 


Q ss_pred             CCCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCccc-----------ccccCCcceEEEEEECCC-CCEEEEEccCCc
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAIS-----------DIYTEHSCAVNVAKYSPS-GFYIASGDISGK  154 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-----------~~~~~h~~~i~~~~~sp~-~~~l~s~~~d~~  154 (423)
                       ..+....+.++|+++.++.. .+..+++|+++++.+.           ..+.+|...|++++|+|+ +.++++|+.|++
T Consensus        97 -~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~  175 (902)
T 2oaj_A           97 -VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT  175 (902)
T ss_dssp             -CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE
T ss_pred             -CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc
Confidence             23556778899999888775 4678999999887653           456789999999999996 578999999999


Q ss_pred             EEEEEcCCCceeEEeeec----------------CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceec--cc
Q psy13076        155 VRIWDTVNKEHILKNEFH----------------PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE--IS  216 (423)
Q Consensus       155 i~vwd~~~~~~~~~~~~~----------------~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  216 (423)
                      | +||+++.+.......+                .+...|.+++|+|+|+++++++.+.  ...+|+..+++.+..  +.
T Consensus       176 v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg--~i~lWd~~~g~~~~~r~l~  252 (902)
T 2oaj_A          176 L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN--SLVFWDANSGHMIMARTVF  252 (902)
T ss_dssp             E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC--CEEEEETTTCCEEEEECSS
T ss_pred             E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCcEEEEEeec
Confidence            9 9999887655433322                1236799999999999998887654  356788776665431  21


Q ss_pred             ---C-------------CCcceeEEEEecC----CCeeEEEEeCCC-----eEEEEc-----------------------
Q psy13076        217 ---G-------------QSKPINSCDFKPS----RPFRIITGSEDN-----TIAVFE-----------------------  248 (423)
Q Consensus       217 ---~-------------~~~~i~~~~~~~~----~~~~~~s~s~d~-----~i~~~~-----------------------  248 (423)
                         .             +..+|.+++|++.    +...+++++.+.     .+.+|+                       
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~  332 (902)
T 2oaj_A          253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK  332 (902)
T ss_dssp             CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS
T ss_pred             ccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc
Confidence               1             2346888888643    224455554431     344433                       


Q ss_pred             ------------------------------------------------CCCceeee-------ec---------------
Q psy13076        249 ------------------------------------------------GPPFKFKM-------TK---------------  258 (423)
Q Consensus       249 ------------------------------------------------~~~~~~~~-------~~---------------  258 (423)
                                                                      ........       .+               
T Consensus       333 ~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~  412 (902)
T 2oaj_A          333 QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV  412 (902)
T ss_dssp             EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred             ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEc
Confidence                                                            21110000       00               


Q ss_pred             -------------------cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcccee--ccc-------ccccCCCeE
Q psy13076        259 -------------------QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS--ELG-------NPAHKGGVY  310 (423)
Q Consensus       259 -------------------~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~--~~~-------~~~~~~~i~  310 (423)
                                         .+|...+.+++|+|+|++|++|+.|++|++||..++....  .+.       ..+|...|.
T Consensus       413 ~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~  492 (902)
T 2oaj_A          413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVD  492 (902)
T ss_dssp             EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEE
T ss_pred             CHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCcee
Confidence                               1112223344567999999999999999999998874321  111       016888999


Q ss_pred             EEEECCCCCeEEEEeCCCcEEEEecCCcce---------------------------------------------eeeee
Q psy13076        311 AVAWKPDGTQLLTASGDKTCKLWDIETKSA---------------------------------------------VSEFL  345 (423)
Q Consensus       311 ~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~---------------------------------------------i~~~~  345 (423)
                      +++|+|++++||+|+.|++|+|||+.+++.                                             +..+.
T Consensus       493 svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~  572 (902)
T 2oaj_A          493 KISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH  572 (902)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC
T ss_pred             EEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE
Confidence            999999999999999999999999976631                                             22222


Q ss_pred             eCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceE----Eec-cCCCceeEEEec-----CCC---CeEEEecC
Q psy13076        346 MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR----VIK-GHNKPITALALS-----PDR---GTVFTGSH  412 (423)
Q Consensus       346 ~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~----~~~-~h~~~v~~i~~s-----p~~---~~l~s~s~  412 (423)
                       .+......+.++++| +|++|+.|+.|++||+.++.....    .+. +|+..|++++|+     ||+   ++|++|+.
T Consensus       573 -~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~  650 (902)
T 2oaj_A          573 -ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTD  650 (902)
T ss_dssp             -CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEET
T ss_pred             -cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEec
Confidence             233445567778899 999999999999999876533211    233 899999999999     886   89999999


Q ss_pred             CCcEEEeeC
Q psy13076        413 DGFITRWNA  421 (423)
Q Consensus       413 D~~i~~W~~  421 (423)
                      |++|++||+
T Consensus       651 D~tv~~wd~  659 (902)
T 2oaj_A          651 MGEVITYKI  659 (902)
T ss_dssp             TSEEEEEEE
T ss_pred             CCcEEEEEE
Confidence            999999997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.7e-47  Score=407.76  Aligned_cols=404  Identities=20%  Similarity=0.242  Sum_probs=331.9

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      ++++++||+++|+|+.||.|++||+.+ .+++..+++|.++|.+++|+|++++|++|+.|++|++||+.+++....+..+
T Consensus       620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  698 (1249)
T 3sfz_A          620 HACFSQDGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH  698 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCC-CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence            456667999999999999999999976 5667789999999999999999999999999999999999999887776543


Q ss_pred             CCCCceEEeeCCC--CCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076         89 QRGQPIVLGGDPK--GKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        89 ~~~~~~~~~~~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                       ......+.++|+  +..++.. .+..+.+|+++++.....+.+|...|++++|+|+++++++++.|++|++||+.+.+.
T Consensus       699 -~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~  777 (1249)
T 3sfz_A          699 -SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE  777 (1249)
T ss_dssp             -SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred             -CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence             344556677774  3444443 467899999999999999999999999999999999999999999999999876543


Q ss_pred             eEEee-----------------------------------------------------ecCCCCCeeEEEECCCCCeEEE
Q psy13076        166 ILKNE-----------------------------------------------------FHPIGGPIKDIAWSPDNQRMVV  192 (423)
Q Consensus       166 ~~~~~-----------------------------------------------------~~~~~~~v~~v~~s~~~~~~~~  192 (423)
                      .....                                                     ...+...+.+++|+|+++.+++
T Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  857 (1249)
T 3sfz_A          778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI  857 (1249)
T ss_dssp             EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE
T ss_pred             cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE
Confidence            22111                                                     0134466778888888887776


Q ss_pred             EEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC---------------------
Q psy13076        193 VGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP---------------------  251 (423)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~---------------------  251 (423)
                      ++.+.  ...+|...++..+..+.+|...|.+++|+|++.. +++++.|+.+++|+...                     
T Consensus       858 ~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~-l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  934 (1249)
T 3sfz_A          858 ALSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS-FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE  934 (1249)
T ss_dssp             ECSSS--CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred             EeCCC--eEEEEEcCCCceeeecCCCccceEEEEECCCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence            65433  3567888888888888899999999999998875 88899999999997321                     


Q ss_pred             ----------------------------------------------------------ceeeeeccccccCeEEEEECCC
Q psy13076        252 ----------------------------------------------------------FKFKMTKQEHSRFVQAVRYSPS  273 (423)
Q Consensus       252 ----------------------------------------------------------~~~~~~~~~~~~~i~~l~~s~~  273 (423)
                                                                                .........|...|++++|+|+
T Consensus       935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d 1014 (1249)
T 3sfz_A          935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1014 (1249)
T ss_dssp             EEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS
T ss_pred             cEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC
Confidence                                                                      0111223457788999999999


Q ss_pred             CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEee
Q psy13076        274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ  353 (423)
Q Consensus       274 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~  353 (423)
                      |+++++++.||.|++||..+++....   ..|...+.+++|+|++ .+++++.|++|++||+.+++.+..+... .....
T Consensus      1015 g~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~ 1089 (1249)
T 3sfz_A         1015 GKTLISSSEDSVIQVWNWQTGDYVFL---QAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCH-QGTVL 1089 (1249)
T ss_dssp             SSCEEEECSSSBEEEEETTTTEEECC---BCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECC-SSCCC
T ss_pred             CCEEEEEcCCCEEEEEECCCCceEEE---ecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEccc-CCcEE
Confidence            99999999999999999998876543   3688999999999966 5788999999999999999887776432 23345


Q ss_pred             EEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        354 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       354 ~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      .+.+.++|.++++++.++.+++||..+.. ++..+.+|..+|++++|+|++++|++++.||.|++||+.+
T Consensus      1090 ~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A         1090 SCAISSDATKFSSTSADKTAKIWSFDLLS-PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp             CEEECSSSSSCEEECCSSCCCEECSSSSS-CSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCcc-eeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            56777899999999999999999998754 4567889999999999999999999999999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.9e-46  Score=342.04  Aligned_cols=294  Identities=24%  Similarity=0.377  Sum_probs=248.4

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      .+..+|+||.++|.+++|+|++++|+||+.|++|++||..++....                                  
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~----------------------------------   91 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH----------------------------------   91 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE----------------------------------
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce----------------------------------
Confidence            4566899999999999999999999999999999999987654322                                  


Q ss_pred             cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                              .+..|...|.+++|+|+++++++++.|+.|++|++.+.+....                             
T Consensus        92 --------~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~-----------------------------  134 (340)
T 1got_B           92 --------AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR-----------------------------  134 (340)
T ss_dssp             --------EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE-----------------------------
T ss_pred             --------EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce-----------------------------
Confidence                    2345778899999999999999999999999999875431100                             


Q ss_pred             ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEE
Q psy13076        198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF  277 (423)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  277 (423)
                                   ....+.+|...+.++.|++++.  +++++.|++|++||.........+..|...|.+++|+|+++++
T Consensus       135 -------------~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  199 (340)
T 1got_B          135 -------------VSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             -------------EEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             -------------eEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence                         0011234556677777777653  7889999999999998888888888999999999999999999


Q ss_pred             EEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCce-eEeeEEE
Q psy13076        278 ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ-VEDQQVS  356 (423)
Q Consensus       278 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~-~~~~~~~  356 (423)
                      ++|+.||.|++||.++++....+.  +|...|.+++|+|++++|++++.|++|++||+++++.+..+..... .....+.
T Consensus       200 ~sg~~d~~v~~wd~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~  277 (340)
T 1got_B          200 VSGACDASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS  277 (340)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             EEEeCCCcEEEEECCCCeeEEEEc--CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence            999999999999999988777664  6889999999999999999999999999999998877766543221 2345567


Q ss_pred             EEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        357 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       357 ~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      +.++|.++++++.++.+++||..+.. .+..+.+|..+|++++|+|++++|+|||.|++|++||
T Consensus       278 ~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          278 FSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ECCCCCEEEEECCCCeEEEEEcccCc-EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            77899999999999999999998754 4677899999999999999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.6e-45  Score=336.13  Aligned_cols=292  Identities=23%  Similarity=0.351  Sum_probs=250.3

Q ss_pred             eeecccccCceeEEEEeCC----CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEE
Q psy13076         40 IRVIKGHNKPITALALSPD----RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVII  115 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~----~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  115 (423)
                      ...+++|.++|.+++|+|+    +++|+||+.|++|++||+.++...                                 
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---------------------------------   71 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---------------------------------   71 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---------------------------------
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---------------------------------
Confidence            3467899999999999884    568999999999999998654221                                 


Q ss_pred             EecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076        116 RNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE  195 (423)
Q Consensus       116 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~  195 (423)
                             ....+.+|...|.+++|+|++.++++++.|++|++||+.+++.....  ......+.+++|+|+++.+++++.
T Consensus        72 -------~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~g~~  142 (321)
T 3ow8_A           72 -------LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTH  142 (321)
T ss_dssp             -------EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE--ECCTTCCCCEEECTTSSEEEEECT
T ss_pred             -------eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEE--eCCCccEEEEEECCCCCEEEEEcC
Confidence                   11235689999999999999999999999999999999887765433  334567889999999999887654


Q ss_pred             CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC
Q psy13076        196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS  275 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  275 (423)
                      .  ....+|..+.+.....+..+...+.+++|+|++.+ +++++.|+.|++||....+....+..|...|.+++|+|+++
T Consensus       143 d--g~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~  219 (321)
T 3ow8_A          143 V--GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ  219 (321)
T ss_dssp             T--SEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC
T ss_pred             C--CcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC
Confidence            3  34578888888888788888889999999999986 89999999999999988888888889999999999999999


Q ss_pred             EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEE
Q psy13076        276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQV  355 (423)
Q Consensus       276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~  355 (423)
                      +|++|+.||.|++||.++++....+.  +|...|.+++|+|++++|++++.|++|++||+.+++++              
T Consensus       220 ~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~--------------  283 (321)
T 3ow8_A          220 LLVTASDDGYIKIYDVQHANLAGTLS--GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV--------------  283 (321)
T ss_dssp             EEEEECTTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------------
T ss_pred             EEEEEcCCCeEEEEECCCcceeEEEc--CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE--------------
Confidence            99999999999999999888777664  68999999999999999999999999999999876543              


Q ss_pred             EEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        356 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       356 ~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                                                    +.+.+|..+|++++|+|++++|++++.|++|++||..
T Consensus       284 ------------------------------~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          284 ------------------------------HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ------------------------------EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence                                          3456789999999999999999999999999999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1e-45  Score=349.03  Aligned_cols=290  Identities=24%  Similarity=0.363  Sum_probs=244.5

Q ss_pred             eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076         40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE  119 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  119 (423)
                      ...+.||.++|++++|+|++++|+||+.|++|++||+++++..                                     
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~-------------------------------------  143 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-------------------------------------  143 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-------------------------------------
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------------------------------
Confidence            4578899999999999999999999999999999999875332                                     


Q ss_pred             CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                           ..+.+|...|++++|+|++++|++|+.|++|++||+.+.+...  .+..+...|                     
T Consensus       144 -----~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~--~~~~h~~~V---------------------  195 (410)
T 1vyh_C          144 -----RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR--TMHGHDHNV---------------------  195 (410)
T ss_dssp             -----EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE--CCCCCSSCE---------------------
T ss_pred             -----EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EEcCCCCCE---------------------
Confidence                 2456799999999999999999999999999999987654332  222333444                     


Q ss_pred             eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEE
Q psy13076        200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFAS  279 (423)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s  279 (423)
                                             .+++|+|++.+ +++++.|++|++||.........+..|...|.+++++|+|.++++
T Consensus       196 -----------------------~~v~~~p~~~~-l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s  251 (410)
T 1vyh_C          196 -----------------------SSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS  251 (410)
T ss_dssp             -----------------------EEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             -----------------------EEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence                                   44445554443 778899999999998887777788899999999999999999999


Q ss_pred             EEecCeEEEEECCCccceecccccccCCCeEEEEECCC--------------------CCeEEEEeCCCcEEEEecCCcc
Q psy13076        280 AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD--------------------GTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       280 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~--------------------~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      |+.|+.|++||..+++....+.  .|...|.+++|+|+                    +++|++|+.|++|++||++++.
T Consensus       252 ~s~D~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~  329 (410)
T 1vyh_C          252 CSNDQTVRVWVVATKECKAELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  329 (410)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             EcCCCeEEEEECCCCceeeEec--CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999999988777663  58899999999996                    6789999999999999999998


Q ss_pred             eeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEe
Q psy13076        340 AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW  419 (423)
Q Consensus       340 ~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W  419 (423)
                      ++..+..+ ......+.+.++|.+|++++.|+.|++||..+.. .+..+.+|...|++++|+|++++|+|||.|++|++|
T Consensus       330 ~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW  407 (410)
T 1vyh_C          330 CLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  407 (410)
T ss_dssp             EEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC-CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             eEEEEECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence            88776532 3334456677899999999999999999997754 467889999999999999999999999999999999


Q ss_pred             eCC
Q psy13076        420 NAK  422 (423)
Q Consensus       420 ~~~  422 (423)
                      ++.
T Consensus       408 ~~r  410 (410)
T 1vyh_C          408 ECR  410 (410)
T ss_dssp             C--
T ss_pred             eCC
Confidence            863

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.3e-46  Score=341.36  Aligned_cols=302  Identities=21%  Similarity=0.317  Sum_probs=230.6

Q ss_pred             CceeecccccC-ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076         38 TPIRVIKGHNK-PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR  116 (423)
Q Consensus        38 ~~~~~~~gh~~-~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  116 (423)
                      +++.++++|.+ +|.+++|+|++++|+||+.|++|++||++++.....                                
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~--------------------------------   53 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK--------------------------------   53 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE--------------------------------
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee--------------------------------
Confidence            45668899988 999999999999999999999999999876432110                                


Q ss_pred             ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076        117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                             .....+|...|.+++|+|++++|++++.|+++++||...........+..+..+|.+++|+|+          
T Consensus        54 -------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~----------  116 (345)
T 3fm0_A           54 -------SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS----------  116 (345)
T ss_dssp             -------EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT----------
T ss_pred             -------eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC----------
Confidence                   001257999999999999999999999999999999865543222333334444555555554          


Q ss_pred             CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc---eeeeeccccccCeEEEEECCC
Q psy13076        197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPS  273 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~i~~l~~s~~  273 (423)
                                                        +.+ +++++.|++|++|+....   .....+..|...|.+++|+|+
T Consensus       117 ----------------------------------~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A          117 ----------------------------------GNL-LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             ----------------------------------SSE-EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             ----------------------------------CCE-EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence                                              433 778889999999986532   344556788899999999999


Q ss_pred             CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcc--------------
Q psy13076        274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS--------------  339 (423)
Q Consensus       274 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~--------------  339 (423)
                      +++|++|+.|+.|++||..+++........+|...|.+++|+|+|++|++++.|++|++||.....              
T Consensus       162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~  241 (345)
T 3fm0_A          162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW  241 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred             CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence            999999999999999998876533222234799999999999999999999999999999964321              


Q ss_pred             -eeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC---Cc-----eEEeccCCCceeEEEecCCCC-eEEE
Q psy13076        340 -AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS---TP-----IRVIKGHNKPITALALSPDRG-TVFT  409 (423)
Q Consensus       340 -~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~---~~-----~~~~~~h~~~v~~i~~sp~~~-~l~s  409 (423)
                       ++..+...+......+...+++..+++++.|+.+++|+.....   .+     .+...+|...|++++|+|++. +|+|
T Consensus       242 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS  321 (345)
T 3fm0_A          242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS  321 (345)
T ss_dssp             EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred             ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence             1222211122233445556788999999999999999986532   11     223468999999999999985 8999


Q ss_pred             ecCCCcEEEeeCCC
Q psy13076        410 GSHDGFITRWNAKT  423 (423)
Q Consensus       410 ~s~D~~i~~W~~~~  423 (423)
                      ||.||+|++|++.+
T Consensus       322 ~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          322 CSDDGEVAFWKYQR  335 (345)
T ss_dssp             EETTSCEEEEEECC
T ss_pred             cCCCCcEEEEEecC
Confidence            99999999999764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-45  Score=394.24  Aligned_cols=397  Identities=17%  Similarity=0.209  Sum_probs=321.9

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC-------
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR-------   87 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~-------   87 (423)
                      ++.++++++.||.|++||+.+ .++...+.+|.++|++++|+|++++|++|+.||+|++||+.++.....+..       
T Consensus       712 ~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~  790 (1249)
T 3sfz_A          712 NHLLLATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS  790 (1249)
T ss_dssp             SCCEEEEEETTSCEEEEETTS-SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred             CceEEEEEeCCCeEEEEECCC-cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence            566899999999999999976 567778999999999999999999999999999999999987654333210       


Q ss_pred             -----------------------------------------------CCCCCceEEeeCCCCCeEEEec-CCeEEEEecC
Q psy13076         88 -----------------------------------------------TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE  119 (423)
Q Consensus        88 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~  119 (423)
                                                                     .+......+.++|++..++... +..+.+|+++
T Consensus       791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~  870 (1249)
T 3sfz_A          791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID  870 (1249)
T ss_dssp             -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred             CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence                                                           1122233456677777766654 5678999999


Q ss_pred             CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc-----------------------------------
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-----------------------------------  164 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~-----------------------------------  164 (423)
                      ++.....+.+|...|++++|+|+++++++++.|++|++||..+..                                   
T Consensus       871 ~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  950 (1249)
T 3sfz_A          871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA  950 (1249)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred             CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence            988888999999999999999999999999999999999954210                                   


Q ss_pred             ------------------------ee------------------EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeE
Q psy13076        165 ------------------------HI------------------LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGH  202 (423)
Q Consensus       165 ------------------------~~------------------~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~  202 (423)
                                              .+                  ....+..+..+|.+++|+|+++.+++++.+.  ...
T Consensus       951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg--~i~ 1028 (1249)
T 3sfz_A          951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS--VIQ 1028 (1249)
T ss_dssp             ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSS--BEE
T ss_pred             cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCC--EEE
Confidence                                    00                  0011223456778888888888887765443  356


Q ss_pred             EEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe
Q psy13076        203 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF  282 (423)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~  282 (423)
                      +|...++... .+..+...+.++.++|++  .+++++.|+.+++|+....+....+..|...|.+++|+|+|+++++++.
T Consensus      1029 vwd~~~~~~~-~~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~ 1105 (1249)
T 3sfz_A         1029 VWNWQTGDYV-FLQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA 1105 (1249)
T ss_dssp             EEETTTTEEE-CCBCCSSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECC
T ss_pred             EEECCCCceE-EEecCCCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcC
Confidence            7777666544 455788899999999965  4789999999999998887777778889999999999999999999999


Q ss_pred             cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeee--------eCceeEeeE
Q psy13076        283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFL--------MGNQVEDQQ  354 (423)
Q Consensus       283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~--------~~~~~~~~~  354 (423)
                      ||.|++||..+++....+.  +|.+.|.+++|+|+|++|++++.|++|++||+.+++.+..+.        ..+......
T Consensus      1106 d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1183 (1249)
T 3sfz_A         1106 DKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183 (1249)
T ss_dssp             SSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCE
T ss_pred             CCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEE
Confidence            9999999999988777664  689999999999999999999999999999999988765541        122233455


Q ss_pred             EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        355 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      +.++++|.++++++  |.+++||+.++.. +..+.+|..+|++++|+||+++|++++.||.|++|++.
T Consensus      1184 l~fs~dg~~l~s~~--g~v~vwd~~~g~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1184 VCFSPDSKTLVSAG--GYLKWWNVATGDS-SQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             EEECTTSSCEEEES--SSEEEBCSSSCBC-CCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred             EEECCCCCEEEECC--CeEEEEECCCCce-eeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence            67778999998885  8999999987543 55678899999999999999999999999999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-44  Score=370.79  Aligned_cols=404  Identities=12%  Similarity=0.141  Sum_probs=287.3

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceee-----
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA-----   83 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~-----   83 (423)
                      .+++++ |++|++++.|+.|++||+.+ .+++..+. |.+.|++++|+|++++|++|+.||+|++||++++.+..     
T Consensus        63 ~l~fsp-g~~L~S~s~D~~v~lWd~~~-~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~  139 (902)
T 2oaj_A           63 EMRFVK-GIYLVVINAKDTVYVLSLYS-QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDN  139 (902)
T ss_dssp             EEEEET-TTEEEEEETTCEEEEEETTT-CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred             EEEEcC-CCEEEEEECcCeEEEEECCC-CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecc
Confidence            456666 88999999999999999986 45666775 77899999999999999999999999999999876531     


Q ss_pred             -----cccCCCCCCceEEeeCCCC-CeEEEe-cCCeEEEEecCCCcccccccCC------------------cceEEEEE
Q psy13076         84 -----TLPRTQRGQPIVLGGDPKG-KNFLYT-NGNSVIIRNIENPAISDIYTEH------------------SCAVNVAK  138 (423)
Q Consensus        84 -----~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~~~~~~~h------------------~~~i~~~~  138 (423)
                           .....+.+....+.++|++ ..++.. .+..+ +|++++++....+.+|                  ...|++++
T Consensus       140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~  218 (902)
T 2oaj_A          140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL  218 (902)
T ss_dssp             HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred             ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence                 1112234556678888864 444444 45677 9999998877766655                  57899999


Q ss_pred             ECCCCCEEEEEccCCcEEEEEcCCCceeEEeee-----c-----------CCCCCeeEEEEC----CCCCeEEEEE-cCC
Q psy13076        139 YSPSGFYIASGDISGKVRIWDTVNKEHILKNEF-----H-----------PIGGPIKDIAWS----PDNQRMVVVG-EGR  197 (423)
Q Consensus       139 ~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----~-----------~~~~~v~~v~~s----~~~~~~~~~~-~~~  197 (423)
                      |+|+|++||+++.|++|++||+++++.+....+     +           .+..+|.+++|+    |++..+++++ .+.
T Consensus       219 fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~  298 (902)
T 2oaj_A          219 YHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSIS  298 (902)
T ss_dssp             ECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred             EcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence            999999999999999999999988765543221     1           123479999995    5544555544 221


Q ss_pred             c---eeeEEEe---------------------------------------------------------------------
Q psy13076        198 E---RFGHVFM---------------------------------------------------------------------  205 (423)
Q Consensus       198 ~---~~~~~~~---------------------------------------------------------------------  205 (423)
                      .   ....++.                                                                     
T Consensus       299 ~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~  378 (902)
T 2oaj_A          299 RGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET  378 (902)
T ss_dssp             TSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE
T ss_pred             CCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE
Confidence            0   0111111                                                                     


Q ss_pred             --ecCCccee-------cccCCCcceeEE----------------------------------EEecCCCeeEEEEeCCC
Q psy13076        206 --SETGTSVG-------EISGQSKPINSC----------------------------------DFKPSRPFRIITGSEDN  242 (423)
Q Consensus       206 --~~~~~~~~-------~~~~~~~~i~~~----------------------------------~~~~~~~~~~~s~s~d~  242 (423)
                        ..++....       .+..+...|+++                                  +|+|++. .+++|+.|+
T Consensus       379 ~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~Dg  457 (902)
T 2oaj_A          379 MLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNG  457 (902)
T ss_dssp             EETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTS
T ss_pred             EECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCC
Confidence              00010000       011122334443                                  3455554 589999999


Q ss_pred             eEEEEcCCCceee------eecc-----ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc---------------
Q psy13076        243 TIAVFEGPPFKFK------MTKQ-----EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL---------------  296 (423)
Q Consensus       243 ~i~~~~~~~~~~~------~~~~-----~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~---------------  296 (423)
                      +|++||.....+.      ....     .|...|.+++|+|+|++||+|+.||+|++|+..+++.               
T Consensus       458 tVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~  537 (902)
T 2oaj_A          458 SVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMN  537 (902)
T ss_dssp             EEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------
T ss_pred             cEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCccccee
Confidence            9999997543211      1111     6788999999999999999999999999999876531               


Q ss_pred             ------------------------------eecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076        297 ------------------------------VSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       297 ------------------------------~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                                                    +..+  .+|.+.|++++|+|+| +||+|+.|++|+|||+++...+.....
T Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l--~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~  614 (902)
T 2oaj_A          538 FRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV--HANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENI  614 (902)
T ss_dssp             CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE--CCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEG
T ss_pred             eeeccccCCccccccccccCCCCCCCccceeEEE--EcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeeh
Confidence                                          2222  3589999999999999 999999999999999988766542111


Q ss_pred             -----CceeEeeEEEEE-----ecC---cEEEEEeCCCcEEEEec---CCCCCceEEeccC-----CCceeEEE-ec---
Q psy13076        347 -----GNQVEDQQVSCL-----WQG---DYLLTVSLSGFISYLDV---NNPSTPIRVIKGH-----NKPITALA-LS---  401 (423)
Q Consensus       347 -----~~~~~~~~~~~~-----~~g---~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~h-----~~~v~~i~-~s---  401 (423)
                           ++......+.++     ++|   .+|++|+.|+.|++|++   .++. ....+.+|     ..+|.+++ |+   
T Consensus       615 ~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~-~~~~~~~~~~~~~~~~v~~i~~~~~~~  693 (902)
T 2oaj_A          615 REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK-FDVQLMDITNVTSKGPIHKIDAFSKET  693 (902)
T ss_dssp             GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC-EEEEEEEEEECCSSCCCCEEEEEETTT
T ss_pred             hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc-EEEEecCceecCCCCceEEEEeEecCC
Confidence                 333345556666     564   89999999999999998   4433 34556666     47888887 76   


Q ss_pred             -------------------CCCCeEEEecCCCcEEEeeCCC
Q psy13076        402 -------------------PDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       402 -------------------p~~~~l~s~s~D~~i~~W~~~~  423 (423)
                                         +++..|+++  |..||+|++.+
T Consensus       694 ~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~  732 (902)
T 2oaj_A          694 KSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGK  732 (902)
T ss_dssp             CCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTC
T ss_pred             CCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCcc
Confidence                               455555554  77899999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2e-44  Score=333.51  Aligned_cols=297  Identities=24%  Similarity=0.382  Sum_probs=245.3

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      ++..+|+||.++|++++|+|++++|+||+.|++|++||..++....                                  
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~----------------------------------  100 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH----------------------------------  100 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE----------------------------------
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce----------------------------------
Confidence            4567899999999999999999999999999999999987654322                                  


Q ss_pred             cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                              .+..|...|.+++|+|++.++++++.|+.+++|++........                             
T Consensus       101 --------~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~-----------------------------  143 (354)
T 2pbi_B          101 --------AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM-----------------------------  143 (354)
T ss_dssp             --------EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS-----------------------------
T ss_pred             --------EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc-----------------------------
Confidence                    1234666788999999999999999999999999754321000                             


Q ss_pred             ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECC--CCC
Q psy13076        198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP--SGS  275 (423)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~--~g~  275 (423)
                                 ......+..|...+.++.|+|++.. +++++.|++|++||....+....+..|...|.+++++|  +|.
T Consensus       144 -----------~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          144 -----------AAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             -----------GGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred             -----------cccceeeeccCCcEEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence                       0001112245566777788877664 88999999999999988888888889999999999987  578


Q ss_pred             EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCc-eeEeeE
Q psy13076        276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN-QVEDQQ  354 (423)
Q Consensus       276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~-~~~~~~  354 (423)
                      +|++|+.||.|++||+++++.+..+.  .|...|.+++|+|++++|++++.|++|++||++..+.+..+.... ......
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~  289 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQCVQAFE--THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS  289 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEec--CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE
Confidence            99999999999999999998877663  689999999999999999999999999999999887665553222 123345


Q ss_pred             EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        355 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      +.+.++|.++++++.++.|++||+.+.. .+..+.+|..+|++++|+||+++|+||+.|++|++|+
T Consensus       290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          290 VDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            6667899999999999999999997754 4677899999999999999999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.8e-45  Score=341.82  Aligned_cols=308  Identities=23%  Similarity=0.333  Sum_probs=248.9

Q ss_pred             EEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec
Q psy13076         30 YLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN  109 (423)
Q Consensus        30 ~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (423)
                      .|+... ..+..+|+||.++|++++|+|++++|+||+.|++|++||..++....                          
T Consensus        50 ~~~~~~-~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~--------------------------  102 (380)
T 3iz6_a           50 SFNPTD-LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH--------------------------  102 (380)
T ss_dssp             CCCCCC-CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE--------------------------
T ss_pred             ccccce-eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce--------------------------
Confidence            444432 44567899999999999999999999999999999999998754332                          


Q ss_pred             CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCe
Q psy13076        110 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR  189 (423)
Q Consensus       110 ~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~  189 (423)
                                      .+.+|...|.+++|+|+++++++|+.|+.+++||+.+....                   ++. 
T Consensus       103 ----------------~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~-------------------~~~-  146 (380)
T 3iz6_a          103 ----------------AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR-------------------DGN-  146 (380)
T ss_dssp             ----------------EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC-------------------CCS-
T ss_pred             ----------------EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc-------------------cCC-
Confidence                            23457778899999999999999999999999998643210                   000 


Q ss_pred             EEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec-----cccccC
Q psy13076        190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-----QEHSRF  264 (423)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~-----~~~~~~  264 (423)
                                         ......+.+|...+.++.|.|.+...+++++.|++|++||.........+     ..|...
T Consensus       147 -------------------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~  207 (380)
T 3iz6_a          147 -------------------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD  207 (380)
T ss_dssp             -------------------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred             -------------------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence                               01112345677788888899887777999999999999998766554433     568888


Q ss_pred             eEEEEECC-CCCEEEEEEecCeEEEEECCC-ccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceee
Q psy13076        265 VQAVRYSP-SGSHFASAGFDGKVFLYDGAS-ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVS  342 (423)
Q Consensus       265 i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~  342 (423)
                      +.+++|+| ++.+|++|+.||.|++||++. .+.+..+  .+|.+.|.+++|+|++++|++++.|++|++||+++++.+.
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~  285 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ  285 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE--CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE--CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence            99999987 789999999999999999974 3445554  4699999999999999999999999999999999998877


Q ss_pred             eeeeCcee------EeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEe----ccCCCceeEEEecCCCCeEEEecC
Q psy13076        343 EFLMGNQV------EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI----KGHNKPITALALSPDRGTVFTGSH  412 (423)
Q Consensus       343 ~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~h~~~v~~i~~sp~~~~l~s~s~  412 (423)
                      .+......      ....+.+.++|.++++|+.+|.|++||....+. +..+    .+|.+.|++++|+|++++|+|||.
T Consensus       286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM-VLNLGTLQNSHEGRISCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE-EEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred             EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce-EEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence            66432211      134566778999999999999999999987544 3333    689999999999999999999999


Q ss_pred             CCcEEEeeCC
Q psy13076        413 DGFITRWNAK  422 (423)
Q Consensus       413 D~~i~~W~~~  422 (423)
                      |++|++|+++
T Consensus       365 D~~i~iW~~~  374 (380)
T 3iz6_a          365 DKNLKIWAFS  374 (380)
T ss_dssp             TSCEEEEECC
T ss_pred             CCCEEEEecC
Confidence            9999999976

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.8e-44  Score=324.18  Aligned_cols=302  Identities=20%  Similarity=0.330  Sum_probs=247.0

Q ss_pred             eeecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         40 IRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      ..+|+||.++|++++|+|++ ++|+||+.|++|++|++......                                    
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------------------------   53 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------------------------   53 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE------------------------------------
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc------------------------------------
Confidence            44789999999999999965 79999999999999998642110                                    


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                       .+.....+.+|...|.+++|+|+++++++++.|++|++||+.+++...  .+..+..+|.+++|+|++..+++++.+. 
T Consensus        54 -~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~D~-  129 (319)
T 3frx_A           54 -FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ--RFVGHKSDVMSVDIDKKASMIISGSRDK-  129 (319)
T ss_dssp             -EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEECTTSCEEEEEETTS-
T ss_pred             -ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE--EEccCCCcEEEEEEcCCCCEEEEEeCCC-
Confidence             011223567899999999999999999999999999999998877553  3456678999999999999988877554 


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCC-----eeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCC
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP-----FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS  273 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  273 (423)
                       ..++|+.. +..+..+.+|...+.++.+.|...     ..+++++.|+.|++|+....+....+..|...|.+++|+|+
T Consensus       130 -~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~  207 (319)
T 3frx_A          130 -TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD  207 (319)
T ss_dssp             -CEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT
T ss_pred             -eEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC
Confidence             35667654 556777888999999999998643     36899999999999999888888888899999999999999


Q ss_pred             CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEee
Q psy13076        274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ  353 (423)
Q Consensus       274 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~  353 (423)
                      |++|++|+.||.|++||..+++.+..+.   +...+.+++|+|++.+|++++.+ .+++|++.....+..+..       
T Consensus       208 g~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~-------  276 (319)
T 3frx_A          208 GTLIASAGKDGEIMLWNLAAKKAMYTLS---AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRP-------  276 (319)
T ss_dssp             SSEEEEEETTCEEEEEETTTTEEEEEEE---CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECC-------
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEec---CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCc-------
Confidence            9999999999999999999988877764   34679999999999999988754 599999987654433210       


Q ss_pred             EEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        354 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       354 ~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                                                 ...  .....|...+++++|+||+++|++|+.|++|++||+.|
T Consensus       277 ---------------------------~~~--~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          277 ---------------------------EFA--GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             ---------------------------CCT--TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             ---------------------------ccc--ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence                                       000  11246778899999999999999999999999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.7e-43  Score=316.94  Aligned_cols=294  Identities=20%  Similarity=0.342  Sum_probs=240.5

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      .+..++.||.++|++++|+|++++|++|+.|+.|++|+..+++...                                  
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~----------------------------------   59 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK----------------------------------   59 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE----------------------------------
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch----------------------------------
Confidence            3456789999999999999999999999999999999987653321                                  


Q ss_pred             cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                              .+.+|...|.+++|+|++++|++++.|+.|++||+++.+....  +..+...|.++                
T Consensus        60 --------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~----------------  113 (312)
T 4ery_A           60 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCC----------------  113 (312)
T ss_dssp             --------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEE----------------
T ss_pred             --------hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE--EcCCCCCEEEE----------------
Confidence                    3457888999999999999999999999999999987654322  22233444444                


Q ss_pred             ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEE
Q psy13076        198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF  277 (423)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  277 (423)
                                                  .|+|++.+ +++++.|+.|++||....+....+..|...|.+++|+|+++++
T Consensus       114 ----------------------------~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  164 (312)
T 4ery_A          114 ----------------------------NFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI  164 (312)
T ss_dssp             ----------------------------EECSSSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ----------------------------EEcCCCCE-EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence                                        44444443 7788999999999988877777788899999999999999999


Q ss_pred             EEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeE-eeEEE
Q psy13076        278 ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVE-DQQVS  356 (423)
Q Consensus       278 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~-~~~~~  356 (423)
                      ++++.||.|++||.++++.+..+.. .+...+..++|+|++++|++++.|+.|++||+++++.+..+....... .....
T Consensus       165 ~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  243 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN  243 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECC-SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred             EEEeCCCcEEEEECCCCceeeEEec-cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE
Confidence            9999999999999999887766542 466789999999999999999999999999999998877764332211 11112


Q ss_pred             E-EecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEec--CCCcEEEeeCC
Q psy13076        357 C-LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS--HDGFITRWNAK  422 (423)
Q Consensus       357 ~-~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s--~D~~i~~W~~~  422 (423)
                      . ..++.++++++.||.|++||+.+. ..+..+.+|...|++++|+|++++|++++  .|++|++|+.+
T Consensus       244 ~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          244 FSVTGGKWIVSGSEDNLVYIWNLQTK-EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EECSSSCEEEECCTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEeCCCcEEEEECCCCEEEEEECCCc-hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            2 246889999999999999999875 45678899999999999999999999986  69999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.9e-43  Score=324.53  Aligned_cols=296  Identities=21%  Similarity=0.325  Sum_probs=228.0

Q ss_pred             eCCEEEEEeccceEEEEeccCCC------CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPS------TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~------~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      ||.+|++|+.||.|++||+..+.      .+...+.+|.++|.+++|+|++.+|+||+.|++|++||+++++.+.     
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~-----  112 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK-----  112 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE-----
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE-----
Confidence            89999999999999999986532      3456789999999999999999999999999999999998754322     


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                                                           .+.+|...|.+++|+|+++++++++.|++|++||+........
T Consensus       113 -------------------------------------~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~  155 (343)
T 2xzm_R          113 -------------------------------------RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS  155 (343)
T ss_dssp             -------------------------------------EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEEC
T ss_pred             -------------------------------------EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeee
Confidence                                                 3457999999999999999999999999999999874322211


Q ss_pred             eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076        169 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE  248 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~  248 (423)
                      .....+...|.+++|+|++....                                  .+.|..+ .+++++.|+.|++|+
T Consensus       156 ~~~~~~~~~v~~~~~~~~~~~~~----------------------------------~~~~~~~-~l~s~~~d~~i~iwd  200 (343)
T 2xzm_R          156 AEKENHSDWVSCVRYSPIMKSAN----------------------------------KVQPFAP-YFASVGWDGRLKVWN  200 (343)
T ss_dssp             CTTTSCSSCEEEEEECCCCCSCS----------------------------------CCCSSCC-EEEEEETTSEEEEEE
T ss_pred             ecccCCCceeeeeeecccccccc----------------------------------ccCCCCC-EEEEEcCCCEEEEEc
Confidence            11224556788899988754210                                  0122333 488999999999999


Q ss_pred             CCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc-ceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        249 GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-LVSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       249 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      . .......+..|...|.+++|+|+|++|++|+.||.|++||+.... ....+   .+...|.+++|+|++++|++ +.|
T Consensus       201 ~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~~v~~v~~sp~~~~la~-~~d  275 (343)
T 2xzm_R          201 T-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF---DAGSTINQIAFNPKLQWVAV-GTD  275 (343)
T ss_dssp             T-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE---ECSSCEEEEEECSSSCEEEE-EES
T ss_pred             C-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee---cCCCcEEEEEECCCCCEEEE-ECC
Confidence            4 455566777899999999999999999999999999999985433 33332   24456999999999988765 457


Q ss_pred             CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeE
Q psy13076        328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV  407 (423)
Q Consensus       328 ~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l  407 (423)
                      +.|++||+.+++.........                               .+........+|...|++++|+|++++|
T Consensus       276 ~~v~iw~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~sp~g~~l  324 (343)
T 2xzm_R          276 QGVKIFNLMTQSKAPVCTIEA-------------------------------EPITKAEGQKGKNPQCTSLAWNALGKKL  324 (343)
T ss_dssp             SCEEEEESSSCCSCSEEECCC-------------------------------CSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred             CCEEEEEeCCCCCCceEEeec-------------------------------CcchhhhhhcCCCCceEEEEECCCCCeE
Confidence            889999998765432110000                               0000011235789999999999999999


Q ss_pred             EEecCCCcEEEeeCCC
Q psy13076        408 FTGSHDGFITRWNAKT  423 (423)
Q Consensus       408 ~s~s~D~~i~~W~~~~  423 (423)
                      ++|+.||+|++|++++
T Consensus       325 ~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          325 FAGFTDGVIRTFSFET  340 (343)
T ss_dssp             EEEETTSEEEEEEEEE
T ss_pred             EEecCCceEEEEEEEc
Confidence            9999999999999764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-43  Score=332.91  Aligned_cols=279  Identities=18%  Similarity=0.242  Sum_probs=245.2

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      ++++++++.++++|+.||.|++||+.+ .+...++++|.++|.+++|+|++++|++|+.|++|++||+++++++.     
T Consensus       113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~-~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~-----  186 (410)
T 1vyh_C          113 RVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR-----  186 (410)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE-----
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-----
Confidence            456667999999999999999999976 45677999999999999999999999999999999999997654332     


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                                                           .+.+|...|.+++|+|++.++++|+.|++|++||+.++.... 
T Consensus       187 -------------------------------------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~-  228 (410)
T 1vyh_C          187 -------------------------------------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-  228 (410)
T ss_dssp             -------------------------------------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred             -------------------------------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-
Confidence                                                 345788999999999999999999999999999998877654 


Q ss_pred             eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCC----------------
Q psy13076        169 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP----------------  232 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------  232 (423)
                       .+..+...|.+++|+|++..+++++.+.  ...+|+..++.....+..|...+.++.|+|+..                
T Consensus       229 -~~~~h~~~v~~~~~~~~g~~l~s~s~D~--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (410)
T 1vyh_C          229 -TFTGHREWVRMVRPNQDGTLIASCSNDQ--TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG  305 (410)
T ss_dssp             -EEECCSSCEEEEEECTTSSEEEEEETTS--CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred             -EEeCCCccEEEEEECCCCCEEEEEcCCC--eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence             3445678899999999999988877554  457888888888888889999999999999632                


Q ss_pred             ---eeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCe
Q psy13076        233 ---FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGV  309 (423)
Q Consensus       233 ---~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i  309 (423)
                         ..+++|+.|+.|++||.........+..|...|.+++|+|+|++|++|+.||.|++||..+++.+..+.  +|...|
T Consensus       306 ~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--~h~~~v  383 (410)
T 1vyh_C          306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFV  383 (410)
T ss_dssp             --CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSSCE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCcE
Confidence               258999999999999998888888888999999999999999999999999999999999988877774  689999


Q ss_pred             EEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        310 YAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       310 ~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      ++++|+|++++|++|+.|++|++|+++
T Consensus       384 ~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          384 TSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999999999999999999999999863

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.2e-44  Score=329.36  Aligned_cols=316  Identities=16%  Similarity=0.195  Sum_probs=224.2

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecC------CCceEEeecCCcceeecccCCC
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH------DGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~------D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      +.| +.++.+.....|++.     .....+|++.|++++|+|||++|+|||.      |++|++|+..++....      
T Consensus        17 ~~~-~~~~g~~~~~~w~~p-----~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~------   84 (357)
T 4g56_B           17 NLY-FQSNGSSKGSAWGRP-----VTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE------   84 (357)
T ss_dssp             -----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG------
T ss_pred             ceE-EecCCCccccccCCC-----CCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce------
Confidence            444 445666777888763     2244679999999999999999999997      5566666655432111      


Q ss_pred             CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe
Q psy13076         90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN  169 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~  169 (423)
                                                      .......+|...|.+++|+|++++ ++++.|++|++||+.+++.....
T Consensus        85 --------------------------------~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~  131 (357)
T 4g56_B           85 --------------------------------SLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVN  131 (357)
T ss_dssp             --------------------------------GGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCC
T ss_pred             --------------------------------eEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEE
Confidence                                            111223468889999999999865 45778999999998765432211


Q ss_pred             eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC
Q psy13076        170 EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG  249 (423)
Q Consensus       170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~  249 (423)
                      .+                                          ...+|...|.+++|+|++.+ +++++.|+.|++||.
T Consensus       132 ~~------------------------------------------~~~~h~~~V~~v~~spdg~~-l~sgs~dg~v~iwd~  168 (357)
T 4g56_B          132 KF------------------------------------------AKYEHDDIVKTLSVFSDGTQ-AVSGGKDFSVKVWDL  168 (357)
T ss_dssp             CE------------------------------------------EECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEET
T ss_pred             ee------------------------------------------ccCCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEEC
Confidence            10                                          01134445555556655553 778899999999999


Q ss_pred             CCceeeeeccccccCeEEEEECCCCC-EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC-CeEEEEeCC
Q psy13076        250 PPFKFKMTKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG-TQLLTASGD  327 (423)
Q Consensus       250 ~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~d  327 (423)
                      ...+....+..|...|++++|+|++. ++++++.||.|++||.++++....+....|...+.+++|+|++ .+|++|+.|
T Consensus       169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d  248 (357)
T 4g56_B          169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET  248 (357)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred             CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence            88888888889999999999999985 7899999999999999998877666555677889999999975 688899999


Q ss_pred             CcEEEEecCCcceeeeeeeCceeEeeEEEEEecC-cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecC-CCC
Q psy13076        328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQG-DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP-DRG  405 (423)
Q Consensus       328 ~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp-~~~  405 (423)
                      +.|++||+++++.+..+... ......+.+.+++ .+|++++.|+.|++||+++.+  +....+|.++|++++|+| |++
T Consensus       249 ~~i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~--~~~~~~H~~~V~~vafsP~d~~  325 (357)
T 4g56_B          249 GNVSLVNIKNPDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE--VFRDLSHRDFVTGVAWSPLDHS  325 (357)
T ss_dssp             SCEEEEESSCGGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE--EEEECCCSSCEEEEEECSSSTT
T ss_pred             cceeEEECCCCcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc--EeEECCCCCCEEEEEEeCCCCC
Confidence            99999999999887776432 2334456666776 578899999999999998753  334568999999999999 789


Q ss_pred             eEEEecCCCcEEEeeCC
Q psy13076        406 TVFTGSHDGFITRWNAK  422 (423)
Q Consensus       406 ~l~s~s~D~~i~~W~~~  422 (423)
                      +|+|+|.|++|++|++.
T Consensus       326 ~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          326 KFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             EEEEEETTSCEEEEECC
T ss_pred             EEEEEcCCCeEEEEECC
Confidence            99999999999999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.5e-43  Score=316.58  Aligned_cols=292  Identities=21%  Similarity=0.284  Sum_probs=236.3

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      +..++|++|.++|.+++|+|++++|+||+.||+|++||++++..+.                                  
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~----------------------------------   49 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR----------------------------------   49 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE----------------------------------
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE----------------------------------
Confidence            4567899999999999999999999999999999999998764432                                  


Q ss_pred             cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                              .+.+|...|.+++|+|+++++++|+.|++|++||+.+++....  +..+...|.+++|+|++          
T Consensus        50 --------~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~----------  109 (304)
T 2ynn_A           50 --------SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTK----------  109 (304)
T ss_dssp             --------EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSS----------
T ss_pred             --------EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE--EeCCCCcEEEEEEcCCC----------
Confidence                    2346778899999999999999999999999999987665432  33344555555555554          


Q ss_pred             ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc-eeeeeccccccCeEEEEECC-CCC
Q psy13076        198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-KFKMTKQEHSRFVQAVRYSP-SGS  275 (423)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~-~~~~~~~~~~~~i~~l~~s~-~g~  275 (423)
                                                        ++ +++++.|++|++|+.... .....+..|...|.+++|+| ++.
T Consensus       110 ----------------------------------~~-l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  154 (304)
T 2ynn_A          110 ----------------------------------PY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS  154 (304)
T ss_dssp             ----------------------------------SE-EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred             ----------------------------------CE-EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence                                              32 678899999999997644 45566788999999999999 578


Q ss_pred             EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECC--CCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEee
Q psy13076        276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP--DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ  353 (423)
Q Consensus       276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~  353 (423)
                      +|++|+.|+.|++||+.++.....+. ..|...+..++|+|  ++++|++++.|++|++||+++++++..+..+ .....
T Consensus       155 ~l~sgs~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h-~~~v~  232 (304)
T 2ynn_A          155 TFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-MSNVS  232 (304)
T ss_dssp             EEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEE
T ss_pred             EEEEEeCCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC-CCCEE
Confidence            99999999999999998776655443 24667889999987  7789999999999999999999888877533 23344


Q ss_pred             EEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCC--eEEEecCCCcEEEeeCC
Q psy13076        354 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG--TVFTGSHDGFITRWNAK  422 (423)
Q Consensus       354 ~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~--~l~s~s~D~~i~~W~~~  422 (423)
                      .+.+.+++..|++++.||.|++||..+. ...+.+..|...+++++|+|+++  +|++|+.|| +.+|++.
T Consensus       233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          233 FAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG  301 (304)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTC-CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence            5666789999999999999999999875 45678889999999999999886  577777665 6666653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-43  Score=322.78  Aligned_cols=301  Identities=19%  Similarity=0.301  Sum_probs=222.0

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      +++.+|++|.++|.+++|+|+  +|+||+.|++|++||++++...                                   
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-----------------------------------   47 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-----------------------------------   47 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-----------------------------------
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-----------------------------------
Confidence            456789999999999999987  9999999999999998753110                                   


Q ss_pred             cCCCcccccc-c-CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076        118 IENPAISDIY-T-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE  195 (423)
Q Consensus       118 ~~~~~~~~~~-~-~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~  195 (423)
                           ....+ . +|...|++++|+|++++|++++.|++|++||.+......   .                        
T Consensus        48 -----~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~---~------------------------   95 (330)
T 2hes_X           48 -----LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT---F------------------------   95 (330)
T ss_dssp             -----EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC----------C------------------------
T ss_pred             -----EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc---c------------------------
Confidence                 00111 2 389999999999999999999999999999975321000   0                        


Q ss_pred             CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC----CceeeeeccccccCeEEEEEC
Q psy13076        196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP----PFKFKMTKQEHSRFVQAVRYS  271 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~----~~~~~~~~~~~~~~i~~l~~s  271 (423)
                                  ....+..+.+|...|.+++|+|++.+ +++++.|++|++|+..    ..+....+..|...|.+++|+
T Consensus        96 ------------~~~~~~~~~~h~~~V~~v~~sp~g~~-las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  162 (330)
T 2hes_X           96 ------------EMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH  162 (330)
T ss_dssp             ------------CCEEEEEEC----CEEEEEECTTSCE-EEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred             ------------cceeEEEEcCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence                        00011223456667788888887764 8899999999999973    234555677899999999999


Q ss_pred             CCCCEEEEEEecCeEEEEECCCc--cceecccccccCCCeEEEEECCC--CCeEEEEeCCCcEEEEecCCc--------c
Q psy13076        272 PSGSHFASAGFDGKVFLYDGASA--DLVSELGNPAHKGGVYAVAWKPD--GTQLLTASGDKTCKLWDIETK--------S  339 (423)
Q Consensus       272 ~~g~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~i~~l~~~~~--~~~l~s~s~d~~i~iwd~~~~--------~  339 (423)
                      |++.+|++|+.|+.|++||..++  +.+..+  .+|.+.|.+++|+|+  +.+|++++.|++|++||+..+        .
T Consensus       163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  240 (330)
T 2hes_X          163 PSEALLASSSYDDTVRIWKDYDDDWECVAVL--NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV  240 (330)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCeeEEEEc--cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence            99999999999999999998765  344444  469999999999998  678999999999999998754        2


Q ss_pred             eeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC-Cce-EEeccCCC-ceeEEEecC--CCCeEEEecCCC
Q psy13076        340 AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPI-RVIKGHNK-PITALALSP--DRGTVFTGSHDG  414 (423)
Q Consensus       340 ~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~-~~~-~~~~~h~~-~v~~i~~sp--~~~~l~s~s~D~  414 (423)
                      +...+...+......+... .+..+++++.||.+++|+..+.+ ... ....+|.. .|++++|+|  ++++|+|||.||
T Consensus       241 ~~~~~~~~h~~~v~~v~~s-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          241 CEAILPDVHKRQVYNVAWG-FNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG  319 (330)
T ss_dssp             EEEECCSCCSSCEEEEEEC-TTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred             EeeecccccccceEEEEEc-CCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence            2222221122223333344 45588999999999999987653 122 23468887 899999999  789999999999


Q ss_pred             cEEEeeCCC
Q psy13076        415 FITRWNAKT  423 (423)
Q Consensus       415 ~i~~W~~~~  423 (423)
                      +|++||+++
T Consensus       320 ~v~~W~~~~  328 (330)
T 2hes_X          320 IVNFWSLEK  328 (330)
T ss_dssp             EEEEEEC--
T ss_pred             cEEEEEecc
Confidence            999999863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.7e-43  Score=322.36  Aligned_cols=299  Identities=16%  Similarity=0.157  Sum_probs=226.6

Q ss_pred             ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc
Q psy13076         44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI  123 (423)
Q Consensus        44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  123 (423)
                      ..|.+.|.+++|+|||++|++++ |+++|+||............                               .....
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~-------------------------------~~~~~   74 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAA-------------------------------PNEGF   74 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGT-------------------------------TCGGG
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccccc-------------------------------CCcce
Confidence            45788899999999999998887 88999998432110000000                               00000


Q ss_pred             cccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe--eecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        124 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN--EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       124 ~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                      ......|...|.+++|+|++ .+++|+.||+|+|||+.+++.....  ....+.+.|.+++|+                 
T Consensus        75 ~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-----------------  136 (344)
T 4gqb_B           75 CSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL-----------------  136 (344)
T ss_dssp             CSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC-----------------
T ss_pred             eeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC-----------------
Confidence            11122456789999999985 6889999999999999876543221  222334444555544                 


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC-EEEEE
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS-HFASA  280 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~  280 (423)
                                                 |++.+ +++++.|++|++||....+....+..|...|.+++|+|++. +|+++
T Consensus       137 ---------------------------pdg~~-l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~  188 (344)
T 4gqb_B          137 ---------------------------SSGTQ-AVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSC  188 (344)
T ss_dssp             ---------------------------TTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             ---------------------------CCCCE-EEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeee
Confidence                                       44443 77889999999999998888888999999999999999985 78999


Q ss_pred             EecCeEEEEECCCccceecccccccCCCeEEEEECCC-CCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEe
Q psy13076        281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD-GTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW  359 (423)
Q Consensus       281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~  359 (423)
                      +.|+.|++||.++++....+....|...+.+++|+|+ +++|++|+.|++|++||+++++++.++..+ ......+.+.+
T Consensus       189 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~fsp  267 (344)
T 4gqb_B          189 SEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH-SQCVTGLVFSP  267 (344)
T ss_dssp             ETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC-SSCEEEEEECS
T ss_pred             ccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC-CCCEEEEEEcc
Confidence            9999999999999988877765566778999999995 568899999999999999999988877533 33345566677


Q ss_pred             cC-cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCe-EEEecCCCcEEEeeCCC
Q psy13076        360 QG-DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT-VFTGSHDGFITRWNAKT  423 (423)
Q Consensus       360 ~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~-l~s~s~D~~i~~W~~~~  423 (423)
                      +| .+|++++.|+.|++||..+.+  +..+.+|.+.|++++|+|+++. |+|+|.|++|++|++.+
T Consensus       268 ~g~~~lasgs~D~~i~vwd~~~~~--~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          268 HSVPFLASLSEDCSLAVLDSSLSE--LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             SSSCCEEEEETTSCEEEECTTCCE--EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             CCCeEEEEEeCCCeEEEEECCCCc--EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            87 468899999999999998753  4567899999999999999875 67999999999999754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-42  Score=316.38  Aligned_cols=273  Identities=21%  Similarity=0.363  Sum_probs=237.3

Q ss_pred             eCCEEEEEeccceEEEEeccCCCC-ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPST-PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP   93 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~-~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~   93 (423)
                      ++.+|++|+.||.|++||++.+.. ....++||..+|.+++|++++++++||+.|++|++||+++++.+..         
T Consensus        47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~---------  117 (321)
T 3ow8_A           47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKS---------  117 (321)
T ss_dssp             --CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE---------
T ss_pred             CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEE---------
Confidence            477999999999999999875432 3446899999999999999999999999999999999987654332         


Q ss_pred             eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC
Q psy13076         94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP  173 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  173 (423)
                                                       +..|...+.+++|+|+++++++++.|+.|++||+++.+....  +..
T Consensus       118 ---------------------------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~--~~~  162 (321)
T 3ow8_A          118 ---------------------------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS--LDT  162 (321)
T ss_dssp             ---------------------------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE--EEC
T ss_pred             ---------------------------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE--ecC
Confidence                                             234555677899999999999999999999999988765543  334


Q ss_pred             CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce
Q psy13076        174 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK  253 (423)
Q Consensus       174 ~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~  253 (423)
                      +...+.+++|+|+++++++++.+.  ...+|+..+++.+..+.+|..+|.+++|+|++.+ +++++.|+.|++|+.....
T Consensus       163 ~~~~v~~~~~spdg~~lasg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          163 RGKFILSIAYSPDGKYLASGAIDG--IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTS--CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCE-EEEECTTSCEEEEETTTCC
T ss_pred             CCceEEEEEECCCCCEEEEEcCCC--eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCE-EEEEcCCCeEEEEECCCcc
Confidence            557899999999999998877553  4578888888888889999999999999999875 8999999999999998877


Q ss_pred             eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEE
Q psy13076        254 FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW  333 (423)
Q Consensus       254 ~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iw  333 (423)
                      ....+..|...|.+++|+|+|++|++++.|+.|++||+.+++.+..+.  .|...|.+++|+|++++|++++.|++|++|
T Consensus       240 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw  317 (321)
T 3ow8_A          240 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF--DHQDQVWGVKYNGNGSKIVSVGDDQEIHIY  317 (321)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc--CCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            777888999999999999999999999999999999999998887774  588999999999999999999999999999


Q ss_pred             ecC
Q psy13076        334 DIE  336 (423)
Q Consensus       334 d~~  336 (423)
                      |..
T Consensus       318 d~p  320 (321)
T 3ow8_A          318 DCP  320 (321)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            964

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-44  Score=339.56  Aligned_cols=363  Identities=13%  Similarity=0.178  Sum_probs=270.5

Q ss_pred             eeeEEEEeCC-EEEEE----------eccceEEEEeccCCC--CceeecccccCceeEEEEeCCCCeEEEecCCCceEEe
Q psy13076          8 QQVSCLWQGD-YLLTV----------SLSGFISYLDVNNPS--TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW   74 (423)
Q Consensus         8 ~~~~~~~~~~-~~~~~----------~~dg~i~~~d~~~~~--~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW   74 (423)
                      .++++++||+ +++++          +.||.|++||+.++.  +++..+ +|.++|.+++|+|++++|++|+.|+.|++|
T Consensus        16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw   94 (416)
T 2pm9_A           16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELY   94 (416)
T ss_dssp             CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEE
T ss_pred             ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEe
Confidence            3566677887 99999          899999999997644  234333 589999999999999999999999999999


Q ss_pred             ecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC-CCEEEEEccCC
Q psy13076         75 NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISG  153 (423)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~~~d~  153 (423)
                      |+.+...                                      .......+.+|...|++++|+|+ +.++++++.|+
T Consensus        95 ~~~~~~~--------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg  136 (416)
T 2pm9_A           95 STNEANN--------------------------------------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG  136 (416)
T ss_dssp             CCSSTTS--------------------------------------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSS
T ss_pred             ecccccc--------------------------------------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCC
Confidence            9875210                                      00122345679999999999998 89999999999


Q ss_pred             cEEEEEcCCCc------eeEE-eeecCCCCCeeEEEECCCC-CeEEEEEcCCceeeEEEeecCCcceecccCC------C
Q psy13076        154 KVRIWDTVNKE------HILK-NEFHPIGGPIKDIAWSPDN-QRMVVVGEGRERFGHVFMSETGTSVGEISGQ------S  219 (423)
Q Consensus       154 ~i~vwd~~~~~------~~~~-~~~~~~~~~v~~v~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  219 (423)
                      +|++||+.+.+      .... .....+..+|.+++|+|++ ..+++++.  +....+|+...+..+..+..+      .
T Consensus       137 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~  214 (416)
T 2pm9_A          137 EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS--SNFASIWDLKAKKEVIHLSYTSPNSGIK  214 (416)
T ss_dssp             CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS--SSCEEEEETTTTEEEEEECCCCCSSCCC
T ss_pred             eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC--CCCEEEEECCCCCcceEEeccccccccC
Confidence            99999998765      2211 1223456789999999994 55555443  334578888887777776665      7


Q ss_pred             cceeEEEEecCCCeeEEEEeCCC---eEEEEcCCCc-eeeeecc-ccccCeEEEEECC-CCCEEEEEEecCeEEEEECCC
Q psy13076        220 KPINSCDFKPSRPFRIITGSEDN---TIAVFEGPPF-KFKMTKQ-EHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGAS  293 (423)
Q Consensus       220 ~~i~~~~~~~~~~~~~~s~s~d~---~i~~~~~~~~-~~~~~~~-~~~~~i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~  293 (423)
                      ..+.+++|+|++...+++++.|+   .|++|+.... .....+. .|...|.+++|+| ++++|++++.||.|++||.++
T Consensus       215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~  294 (416)
T 2pm9_A          215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES  294 (416)
T ss_dssp             CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred             CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence            88999999999877799999998   9999998764 4445566 7889999999999 899999999999999999999


Q ss_pred             ccceecccccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecCCcceeeeeeeCc-eeEeeEEEEEecCcEEEEEeCCC
Q psy13076        294 ADLVSELGNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSAVSEFLMGN-QVEDQQVSCLWQGDYLLTVSLSG  371 (423)
Q Consensus       294 ~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~  371 (423)
                      ++.+..+.  .|...|.+++|+|++ ++|++++.|++|++||+.+.+......... ........+...+..++..+..+
T Consensus       295 ~~~~~~~~--~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (416)
T 2pm9_A          295 AEQLSQFP--ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS  372 (416)
T ss_dssp             CCEEEEEE--CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred             Cccceeec--CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence            98877764  588899999999999 899999999999999998775433221100 00000000011111111111111


Q ss_pred             cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        372 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       372 ~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      .   +.       ......|..++++++|+|++++|++++.|+.|++|+++|
T Consensus       373 ~---~~-------~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          373 V---FH-------LQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             S---SC-------CCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             c---cc-------ccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence            1   00       122345888999999999999999999999999999876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.1e-42  Score=354.55  Aligned_cols=393  Identities=17%  Similarity=0.227  Sum_probs=319.2

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      +++++|||.+||+++.||.|++||+.+ .+.+..+.+|.++|.+++|+|++++|++|+.||.|++||+++++....+.. 
T Consensus        18 ~i~~sp~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-   95 (814)
T 3mkq_A           18 GIDFHPTEPWVLTTLYSGRVEIWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-   95 (814)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCC-CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-
Confidence            466667999999999999999999976 556778999999999999999999999999999999999999887776643 


Q ss_pred             CCCCceEEeeCCCCCeEEEec-CCeEEEEecCCC-cccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCce
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP-AISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                      +.+....+.++|++..++..+ +..+.+|+++++ .....+.+|...|.+++|+| ++.++++++.|++|++||+.+...
T Consensus        96 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~  175 (814)
T 3mkq_A           96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP  175 (814)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC
T ss_pred             CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence            345566788999998777654 679999999876 67788899999999999999 899999999999999999977655


Q ss_pred             eEEeeecCCCCCeeEEEECC--CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076        166 ILKNEFHPIGGPIKDIAWSP--DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT  243 (423)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~  243 (423)
                      ...... ....++..++|+|  ++..+++++.+  ....+|+...+..+..+..|...+.++.|+|+++. +++++.|+.
T Consensus       176 ~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~  251 (814)
T 3mkq_A          176 NFTLTT-GQERGVNYVDYYPLPDKPYMITASDD--LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI-IISGSEDGT  251 (814)
T ss_dssp             SEEEEC-CCTTCCCEEEECCSTTCCEEEEECTT--SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE-EEEEETTSC
T ss_pred             eeEEec-CCCCCEEEEEEEECCCCCEEEEEeCC--CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCe
Confidence            433222 2346789999999  88887776544  34677888888888888889999999999999885 889999999


Q ss_pred             EEEEcCCCceeeeeccccccCeEEEEECCCCCE-EEEEEecCeEEEEECCCccceeccc---------------------
Q psy13076        244 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH-FASAGFDGKVFLYDGASADLVSELG---------------------  301 (423)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~-l~s~s~dg~i~vwd~~~~~~~~~~~---------------------  301 (423)
                      |++|+....+.......+...+.+++|+|+|+. +++++.|+.+.+|+.........+.                     
T Consensus       252 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  331 (814)
T 3mkq_A          252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTA  331 (814)
T ss_dssp             EEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEE
T ss_pred             EEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeee
Confidence            999998887777778888889999999999973 3455567778888865432111110                     


Q ss_pred             --------------------ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecC
Q psy13076        302 --------------------NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQG  361 (423)
Q Consensus       302 --------------------~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g  361 (423)
                                          ...+...+.+++|+|+|++|++++ |+.+.+|++.......      ......+..+++|
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~------~~~i~~~~~spdg  404 (814)
T 3mkq_A          332 VIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA------FGKCQDFVWGPDS  404 (814)
T ss_dssp             ECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE------EEECSEEEECTTS
T ss_pred             ecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC------CCceEEEEEeCCC
Confidence                                012344578999999999999988 8999999986543321      1233355666799


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC---CeEEEecCCCcEEEeeCCC
Q psy13076        362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR---GTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       362 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~---~~l~s~s~D~~i~~W~~~~  423 (423)
                      .++++++.++.+++|+         .+.+|...+.+++|+|++   ++|++++.|+.|++||+++
T Consensus       405 ~~la~~~~~g~v~l~~---------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~  460 (814)
T 3mkq_A          405 NSYALIDETGQIKYYK---------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDN  460 (814)
T ss_dssp             SCEEEECTTCCEEEEE---------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTT
T ss_pred             CeEEEEeCCCcEEEEE---------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCc
Confidence            9999999999999995         245788899999999998   6899999999999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-42  Score=324.16  Aligned_cols=350  Identities=13%  Similarity=0.177  Sum_probs=271.1

Q ss_pred             eEEEEeccCCCCceeecc--cccCceeEEEEeCCCC-eEEEecCCCceEEeec----CCcce------eecccCCCCCCc
Q psy13076         27 FISYLDVNNPSTPIRVIK--GHNKPITALALSPDRG-TVFTGSHDGFITRWNA----KTEYI------FATLPRTQRGQP   93 (423)
Q Consensus        27 ~i~~~d~~~~~~~~~~~~--gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~----~~~~~------~~~~~~~~~~~~   93 (423)
                      .+.+|++..   ....++  .|.++|.+++|+|+++ +|++|+.|+.|++||+    .++..      ...+...     
T Consensus        26 ~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-----   97 (425)
T 1r5m_A           26 IDSSDDLDG---FVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP-----   97 (425)
T ss_dssp             --------C---CCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC-----
T ss_pred             ccccccchh---hhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc-----
Confidence            345677643   233444  4669999999999999 9999999999999999    66542      1111000     


Q ss_pred             eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC
Q psy13076         94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP  173 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  173 (423)
                                                 -.......+|...|++++|+|++++|++++.|+.|++|| .+.+..  ..+..
T Consensus        98 ---------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~--~~~~~  147 (425)
T 1r5m_A           98 ---------------------------FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALL--NVLNF  147 (425)
T ss_dssp             ---------------------------CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEE--EEECC
T ss_pred             ---------------------------ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCee--eeccC
Confidence                                       000012345788999999999999999999999999999 344433  23445


Q ss_pred             CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcc---------------eeEEEEecCCCeeEEEE
Q psy13076        174 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP---------------INSCDFKPSRPFRIITG  238 (423)
Q Consensus       174 ~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~~s~  238 (423)
                      +..+|.+++|+|+++.+++++.+.  ...+|+...+..+..+..+...               +.++.|+|++  .++++
T Consensus       148 ~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  223 (425)
T 1r5m_A          148 HRAPIVSVKWNKDGTHIISMDVEN--VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIP  223 (425)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTC--CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEE
T ss_pred             CCccEEEEEECCCCCEEEEEecCC--eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEE
Confidence            678899999999999998877543  3567888777777777666655               8899999975  37889


Q ss_pred             eCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC
Q psy13076        239 SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG  318 (423)
Q Consensus       239 s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~  318 (423)
                      +.++.|++|+....+.......|...|.+++|+|++++|++++.||.|++||..+++....+.  .|...+.+++|+|++
T Consensus       224 ~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~  301 (425)
T 1r5m_A          224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY--GHSQSIVSASWVGDD  301 (425)
T ss_dssp             CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC--CCSSCEEEEEEETTT
T ss_pred             cCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEec--CCCccEEEEEECCCC
Confidence            999999999988776666777889999999999999999999999999999999888776663  588899999999999


Q ss_pred             CeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC----------------
Q psy13076        319 TQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS----------------  382 (423)
Q Consensus       319 ~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~----------------  382 (423)
                       +|++++.|+.|++||+++++.+..+... ......+.+.+++.+|++++.+|.|++|++.+..                
T Consensus       302 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  379 (425)
T 1r5m_A          302 -KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNP  379 (425)
T ss_dssp             -EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------C
T ss_pred             -EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCc
Confidence             9999999999999999998887766532 2334456667799999999999999999997643                


Q ss_pred             ---CceEEeccCCC--ceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        383 ---TPIRVIKGHNK--PITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       383 ---~~~~~~~~h~~--~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                         .++..+.+|..  +|++++|+|++++|++++.||.|++|+++
T Consensus       380 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          380 LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             ccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence               15677889977  99999999999999999999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.4e-42  Score=314.94  Aligned_cols=323  Identities=14%  Similarity=0.197  Sum_probs=256.7

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      +.+++++||++++++..++.+..|+......++ ...+|.++|.+++|+|++++|++++ |+.|++||++++.....+. 
T Consensus        13 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~-   89 (337)
T 1gxr_A           13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQI-NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS-   89 (337)
T ss_dssp             CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE-EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE-
T ss_pred             eEEEECCCCCEEEeecCCCcEeccccCCccccc-eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee-
Confidence            457777899999998888877666544323333 3457999999999999999999999 9999999998653211110 


Q ss_pred             CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeE
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL  167 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~  167 (423)
                                                          .....+|...|.+++|+|+++++++++.|+.|++||+.+.+...
T Consensus        90 ------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  133 (337)
T 1gxr_A           90 ------------------------------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI  133 (337)
T ss_dssp             ------------------------------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE
T ss_pred             ------------------------------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce
Confidence                                                00112588899999999999999999999999999998765333


Q ss_pred             EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076        168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF  247 (423)
Q Consensus       168 ~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~  247 (423)
                      ...+..+...+.+++|+|+++                                            + +++++.|+.+++|
T Consensus       134 ~~~~~~~~~~i~~~~~~~~~~--------------------------------------------~-l~~~~~dg~v~~~  168 (337)
T 1gxr_A          134 KAELTSSAPACYALAISPDSK--------------------------------------------V-CFSCCSDGNIAVW  168 (337)
T ss_dssp             EEEEECSSSCEEEEEECTTSS--------------------------------------------E-EEEEETTSCEEEE
T ss_pred             eeecccCCCceEEEEECCCCC--------------------------------------------E-EEEEeCCCcEEEE
Confidence            333333444555555555443                                            2 6677889999999


Q ss_pred             cCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      +....+.......|...+.+++|+|+++++++++.||.|++||.++++....+   .+...+.+++|+|++++|++++.|
T Consensus       169 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~  245 (337)
T 1gxr_A          169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---DFTSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             eCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee---cCCCceEEEEECCCCCEEEEEcCC
Confidence            98887777778889999999999999999999999999999999998877665   367789999999999999999999


Q ss_pred             CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeE
Q psy13076        328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV  407 (423)
Q Consensus       328 ~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l  407 (423)
                      +.|++||+.+++.....  .+......+...+++.++++++.+|.+++|++.+....  ....|..+|++++|+|++++|
T Consensus       246 ~~i~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l  321 (337)
T 1gxr_A          246 SNVEVLHVNKPDKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             SCEEEEETTSSCEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEECSSCEEEEEECTTSCEE
T ss_pred             CcEEEEECCCCCeEEEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE--EEecCCCcEEEEEECCCCCEE
Confidence            99999999988754322  22333455666778999999999999999999886543  345689999999999999999


Q ss_pred             EEecCCCcEEEeeC
Q psy13076        408 FTGSHDGFITRWNA  421 (423)
Q Consensus       408 ~s~s~D~~i~~W~~  421 (423)
                      ++++.||.|++|++
T Consensus       322 ~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          322 VTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSCEEEEEE
T ss_pred             EEecCCCeEEEEEE
Confidence            99999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.3e-42  Score=326.09  Aligned_cols=343  Identities=13%  Similarity=0.171  Sum_probs=268.6

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      ..+++++||++|++++.||.|++||+.+ .+....+++| ..+....|++++++|++|+.|+.|++||++++....    
T Consensus        60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----  133 (420)
T 3vl1_A           60 KGNTFEKVGSHLYKARLDGHDFLFNTII-RDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE----  133 (420)
T ss_dssp             TTCEEEEEETTEEEEEETTEEEEEECCS-EETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE----
T ss_pred             cceeeeecCCeEEEEEcCCcEEEEEecc-cceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee----
Confidence            3688999999999999999999999875 3345566766 456666889999999999999999999987654322    


Q ss_pred             CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeE
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL  167 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~  167 (423)
                                                            .+.+|...|++++|+|++++|++++.|++|++||+.+.+...
T Consensus       134 --------------------------------------~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  175 (420)
T 3vl1_A          134 --------------------------------------IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR  175 (420)
T ss_dssp             --------------------------------------ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE
T ss_pred             --------------------------------------ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce
Confidence                                                  345789999999999999999999999999999998776543


Q ss_pred             EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccC---CCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076        168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG---QSKPINSCDFKPSRPFRIITGSEDNTI  244 (423)
Q Consensus       168 ~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~s~s~d~~i  244 (423)
                      .  +..+..+|.+++|+|+++.+++++.+.  ...+|+..++..+..+..   +...+.++.+.|.....          
T Consensus       176 ~--~~~h~~~v~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------  241 (420)
T 3vl1_A          176 T--LIGHRATVTDIAIIDRGRNVLSASLDG--TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------  241 (420)
T ss_dssp             E--EECCSSCEEEEEEETTTTEEEEEETTS--CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------
T ss_pred             E--EcCCCCcEEEEEEcCCCCEEEEEcCCC--cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------
Confidence            3  345667899999999988888766543  356777776666655553   44556666666543221          


Q ss_pred             EEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC-eEEE
Q psy13076        245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLT  323 (423)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s  323 (423)
                                  ....+...+.+++|+|+|+++++|+.||.|++||.++++....+. ..|...|.+++|+|+++ +|++
T Consensus       242 ------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~  308 (420)
T 3vl1_A          242 ------------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYA  308 (420)
T ss_dssp             ------------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEE
T ss_pred             ------------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEE
Confidence                        122344567788999999999999999999999999988776654 35788999999999998 9999


Q ss_pred             EeCCCcEEEEecCCcce-eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCc--------eEEeccCCCc
Q psy13076        324 ASGDKTCKLWDIETKSA-VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP--------IRVIKGHNKP  394 (423)
Q Consensus       324 ~s~d~~i~iwd~~~~~~-i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~--------~~~~~~h~~~  394 (423)
                      ++.|+.|++||+++++. +..+...+......+ ..+++..+++++.|+.+++|++..+..+        ...+.+|...
T Consensus       309 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (420)
T 3vl1_A          309 GYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA  387 (420)
T ss_dssp             EETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC
T ss_pred             EeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc
Confidence            99999999999998754 555543232222222 3458899999999999999998874222        2346789999


Q ss_pred             eeEEEecCCCC---eEEEecCCCcEEEeeCC
Q psy13076        395 ITALALSPDRG---TVFTGSHDGFITRWNAK  422 (423)
Q Consensus       395 v~~i~~sp~~~---~l~s~s~D~~i~~W~~~  422 (423)
                      |.+++|+|+++   .|+++|.+|.+.+|+++
T Consensus       388 v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          388 VSQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             CCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             eEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence            99999999999   78888889999999986

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2e-41  Score=311.25  Aligned_cols=305  Identities=23%  Similarity=0.329  Sum_probs=243.1

Q ss_pred             ceeecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         39 PIRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        39 ~~~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      +..+|+||+++|++|+|+|+ +++|+|||.|++|++||+++.+..                                   
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~-----------------------------------   74 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN-----------------------------------   74 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC-----------------------------------
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc-----------------------------------
Confidence            34579999999999999997 579999999999999998764211                                   


Q ss_pred             cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                        .......+.+|...|.+++|+|+++++++++.|+.|++|+..........  ......+..+.+++++..+++++.+.
T Consensus        75 --~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~s~d~  150 (340)
T 4aow_A           75 --YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF--VGHTKDVLSVAFSSDNRQIVSGSRDK  150 (340)
T ss_dssp             --SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             --cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee--cCCCCceeEEEEeecCccceeecCCC
Confidence              01122356789999999999999999999999999999998876554332  33446788899999999998876544


Q ss_pred             ceeeEEEeecCCcc-eecccCCCcceeEEEEecCCC-eeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC
Q psy13076        198 ERFGHVFMSETGTS-VGEISGQSKPINSCDFKPSRP-FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS  275 (423)
Q Consensus       198 ~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  275 (423)
                      .  ..+|+...... ......|...+..++|+++.. ..+++++.|+.|++|+....+....+..|...|++++|+|+|+
T Consensus       151 ~--~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~  228 (340)
T 4aow_A          151 T--IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS  228 (340)
T ss_dssp             C--EEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             e--EEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC
Confidence            3  34565443332 334567888999999988754 3578899999999999998888888889999999999999999


Q ss_pred             EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEE
Q psy13076        276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQV  355 (423)
Q Consensus       276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~  355 (423)
                      +|++|+.||.|++||..+.+.+..+.   +...+.+++|+|++.+ ++++.|+.|++||++++..+..+..         
T Consensus       229 ~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~---------  295 (340)
T 4aow_A          229 LCASGGKDGQAMLWDLNEGKHLYTLD---GGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQ---------  295 (340)
T ss_dssp             EEEEEETTCEEEEEETTTTEEEEEEE---CSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECC---------
T ss_pred             EEEEEeCCCeEEEEEeccCceeeeec---CCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccc---------
Confidence            99999999999999999988777664   4567999999998755 5667799999999988766544321         


Q ss_pred             EEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        356 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       356 ~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                                                ........+|...|++++|+||+++|+||+.||+|++||++|
T Consensus       296 --------------------------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          296 --------------------------EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             --------------------------C-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             --------------------------cceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence                                      111233568999999999999999999999999999999875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.3e-41  Score=311.36  Aligned_cols=275  Identities=20%  Similarity=0.226  Sum_probs=224.0

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc----eeec
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY----IFAT   84 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~----~~~~   84 (423)
                      .+++++||++|++|+.||.|++||+.+ .+++..+.+|...|.+++|+|++++|++|+.|+.|++||+.+..    ....
T Consensus        60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~  138 (340)
T 1got_B           60 AMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE  138 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCC-CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence            344455999999999999999999976 45677889999999999999999999999999999999998652    2222


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE  164 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~  164 (423)
                      +.. +.+....+.+.++++.+..+.+..+++|+++++.....+.+|...|.+++|+|+++++++|+.|++|++||+.+..
T Consensus       139 ~~~-h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~  217 (340)
T 1got_B          139 LAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM  217 (340)
T ss_dssp             EEC-CSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             ecC-CCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe
Confidence            222 2334445666777776666678899999999999999999999999999999999999999999999999997765


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI  244 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i  244 (423)
                      ...  .+..+..+|.+++|+|++                                            .+ +++++.|++|
T Consensus       218 ~~~--~~~~h~~~v~~v~~~p~~--------------------------------------------~~-l~s~s~d~~v  250 (340)
T 1got_B          218 CRQ--TFTGHESDINAICFFPNG--------------------------------------------NA-FATGSDDATC  250 (340)
T ss_dssp             EEE--EECCCSSCEEEEEECTTS--------------------------------------------SE-EEEEETTSCE
T ss_pred             eEE--EEcCCcCCEEEEEEcCCC--------------------------------------------CE-EEEEcCCCcE
Confidence            432  223334445555555544                                            32 6788899999


Q ss_pred             EEEcCCCceeeeecc--ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEE
Q psy13076        245 AVFEGPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL  322 (423)
Q Consensus       245 ~~~~~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  322 (423)
                      ++||....+......  .+...|.+++|+|+|++|++|+.||.|++||..+++....+  .+|...|.+++|+|+|++|+
T Consensus       251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~--~~h~~~v~~~~~s~dg~~l~  328 (340)
T 1got_B          251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--AGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSCEE
T ss_pred             EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe--ecCCCcEEEEEEcCCCCEEE
Confidence            999987655443332  33457999999999999999999999999999988877766  46999999999999999999


Q ss_pred             EEeCCCcEEEEe
Q psy13076        323 TASGDKTCKLWD  334 (423)
Q Consensus       323 s~s~d~~i~iwd  334 (423)
                      +|+.|++|+|||
T Consensus       329 s~s~D~~i~iWd  340 (340)
T 1got_B          329 TGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEcCCccEEecC
Confidence            999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.1e-42  Score=314.12  Aligned_cols=285  Identities=17%  Similarity=0.204  Sum_probs=223.6

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccC---------CC-CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNN---------PS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT   78 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~---------~~-~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~   78 (423)
                      .+++++||++|++++ |+.+++||...         +. ........|..+|.+++|+|++ .|++|+.||+|++||+++
T Consensus        35 ~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~  112 (344)
T 4gqb_B           35 AARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDE  112 (344)
T ss_dssp             EEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECT
T ss_pred             EEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccC
Confidence            355667999999887 77777776321         11 1111233577899999999985 688999999999999987


Q ss_pred             cceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEE
Q psy13076         79 EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW  158 (423)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vw  158 (423)
                      ++....+                                      ...+.+|...|++++|+|+|++|++|+.|++|++|
T Consensus       113 ~~~~~~~--------------------------------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw  154 (344)
T 4gqb_B          113 NETLIVS--------------------------------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW  154 (344)
T ss_dssp             TSSCEEE--------------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCceeEe--------------------------------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            6432211                                      11245799999999999999999999999999999


Q ss_pred             EcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc--CCCcceeEEEEecCCCeeEE
Q psy13076        159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS--GQSKPINSCDFKPSRPFRII  236 (423)
Q Consensus       159 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~  236 (423)
                      |+++++.+.  .+..+...|.+++|+|++..+++.+.. +...++|+..+++....+.  .+...+.+++|+|.+...++
T Consensus       155 d~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~  231 (344)
T 4gqb_B          155 DLAQQVVLS--SYRAHAAQVTCVAASPHKDSVFLSCSE-DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV  231 (344)
T ss_dssp             ETTTTEEEE--EECCCSSCEEEEEECSSCTTEEEEEET-TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred             ECCCCcEEE--EEcCcCCceEEEEecCCCCCceeeecc-ccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence            998877653  455667899999999998765443332 2346788888887776654  44557899999998877799


Q ss_pred             EEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC-CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEEC
Q psy13076        237 TGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK  315 (423)
Q Consensus       237 s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~  315 (423)
                      +|+.|+.|++||....+....+..|...|++++|+|+| ++|++|+.|+.|++||..+++... +  .+|.+.|.+++|+
T Consensus       232 sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~--~~H~~~V~~v~~s  308 (344)
T 4gqb_B          232 FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S--QAHRDFVRDATWS  308 (344)
T ss_dssp             EEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E--CCCSSCEEEEEEC
T ss_pred             EeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E--cCCCCCEEEEEEe
Confidence            99999999999998888778888999999999999998 589999999999999999887653 3  4799999999999


Q ss_pred             CCCC-eEEEEeCCCcEEEEecCCcc
Q psy13076        316 PDGT-QLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       316 ~~~~-~l~s~s~d~~i~iwd~~~~~  339 (423)
                      |+++ +|+++|.|++|++|++.+..
T Consensus       309 p~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          309 PLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             SSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCCCeEEEEEcCCCeEEEEECCCCC
Confidence            9986 56789999999999998754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-41  Score=314.52  Aligned_cols=286  Identities=18%  Similarity=0.238  Sum_probs=224.6

Q ss_pred             eeeEEEEeCCEEEEEec------cceEEEEeccCCCC---ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCC
Q psy13076          8 QQVSCLWQGDYLLTVSL------SGFISYLDVNNPST---PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT   78 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~------dg~i~~~d~~~~~~---~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~   78 (423)
                      ..|+++|||++||+|+.      ||.|++|+......   ......+|.+.|.+++|+|++. +++++.||+|++||+.+
T Consensus        46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~  124 (357)
T 4g56_B           46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILE  124 (357)
T ss_dssp             EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC----
T ss_pred             EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccc
Confidence            35677789999999998      78899998754221   2234467999999999999875 55678899999999987


Q ss_pred             cceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEE
Q psy13076         79 EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW  158 (423)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vw  158 (423)
                      ++.....                                      .....+|...|++++|+|++++|++++.|++|++|
T Consensus       125 ~~~~~~~--------------------------------------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B          125 KESLLVN--------------------------------------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             ----CCC--------------------------------------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             cceeEEE--------------------------------------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            5432111                                      01234799999999999999999999999999999


Q ss_pred             EcCCCceeEEeeecCCCCCeeEEEECCCCCeE-EEEEcCCceeeEEEeecCCcceeccc--CCCcceeEEEEecCCCeeE
Q psy13076        159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM-VVVGEGRERFGHVFMSETGTSVGEIS--GQSKPINSCDFKPSRPFRI  235 (423)
Q Consensus       159 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~  235 (423)
                      |+.+++...  .+..+...|.+++|+|++..+ ++++.+  ....+|+..++.....+.  .+...+.+++|+|++...+
T Consensus       167 d~~~~~~~~--~~~~h~~~v~~v~~s~~~~~~~~s~~~d--g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l  242 (357)
T 4g56_B          167 DLSQKAVLK--SYNAHSSEVNCVAACPGKDTIFLSCGED--GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF  242 (357)
T ss_dssp             ETTTTEEEE--EECCCSSCEEEEEECTTCSSCEEEEETT--SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred             ECCCCcEEE--EEcCCCCCEEEEEEccCCCceeeeeccC--CceEEEECCCCceeeeeeeccccccccchhhhhcccceE
Confidence            998876554  344567889999999998754 444433  335677777776655443  4566799999999987779


Q ss_pred             EEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC-CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEE
Q psy13076        236 ITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW  314 (423)
Q Consensus       236 ~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~  314 (423)
                      ++++.|+.|++||....+....+..|...|++++|+|++ ++|++|+.|+.|++||.++++.+..+   +|.+.|++++|
T Consensus       243 a~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vaf  319 (357)
T 4g56_B          243 ACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAW  319 (357)
T ss_dssp             EEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEE
T ss_pred             EEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEE
Confidence            999999999999998877777888899999999999997 57999999999999999998877654   58999999999


Q ss_pred             CC-CCCeEEEEeCCCcEEEEecCCcc
Q psy13076        315 KP-DGTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       315 ~~-~~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      +| ++++|+|++.|++|++||+.+..
T Consensus       320 sP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          320 SPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             CSSSTTEEEEEETTSCEEEEECC---
T ss_pred             eCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            99 79999999999999999997653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.4e-41  Score=310.87  Aligned_cols=291  Identities=18%  Similarity=0.278  Sum_probs=228.4

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCc--eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP--IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~--~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      ..+++++||++||+|+.||.|++||+..+...  ....++|.++|.+++|+|++++|++|+.|++|++|+.+++..    
T Consensus        20 ~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~----   95 (345)
T 3fm0_A           20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF----   95 (345)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E----
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe----
Confidence            35667779999999999999999999754321  223478999999999999999999999999999999865321    


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                                                          .....+.+|...|.+++|+|++++|++++.|++|++||+.+...
T Consensus        96 ------------------------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~  139 (345)
T 3fm0_A           96 ------------------------------------ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE  139 (345)
T ss_dssp             ------------------------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred             ------------------------------------EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence                                                11224568999999999999999999999999999999976543


Q ss_pred             e-EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc--ceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076        166 I-LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT--SVGEISGQSKPINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       166 ~-~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                      . ....+..+...|.+++|+|+++.+++++.+.  ...+|+...+.  ....+.+|...|.+++|+|++.+ +++++.|+
T Consensus       140 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~--~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~-l~s~s~D~  216 (345)
T 3fm0_A          140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDD--TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDR  216 (345)
T ss_dssp             EEEEEEECCCCSCEEEEEECSSSSCEEEEETTS--CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE-EEEEETTS
T ss_pred             eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC--cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE-EEEEeCCC
Confidence            2 2334556678899999999999988877554  34677766553  34677889999999999999875 89999999


Q ss_pred             eEEEEcCCC---------------ceeeeecc-ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcccee----cc--
Q psy13076        243 TIAVFEGPP---------------FKFKMTKQ-EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS----EL--  300 (423)
Q Consensus       243 ~i~~~~~~~---------------~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~----~~--  300 (423)
                      +|++|+...               .+...... .|...|.+++|+|++.+|++++.|+.|++|+........    .+  
T Consensus       217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~  296 (345)
T 3fm0_A          217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA  296 (345)
T ss_dssp             CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE
T ss_pred             eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe
Confidence            999997411               11122222 377889999999999999999999999999976543110    01  


Q ss_pred             -cccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEecCCccee
Q psy13076        301 -GNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDIETKSAV  341 (423)
Q Consensus       301 -~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~~~~~~i  341 (423)
                       ...+|...|.+++|+|++ .+|++++.|++|++|++.+++..
T Consensus       297 ~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             EETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             eecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence             123689999999999998 59999999999999999887644

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-40  Score=310.33  Aligned_cols=320  Identities=22%  Similarity=0.358  Sum_probs=232.9

Q ss_pred             EEEEeccCCCCce---eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCe
Q psy13076         28 ISYLDVNNPSTPI---RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKN  104 (423)
Q Consensus        28 i~~~d~~~~~~~~---~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (423)
                      ..+|+...+...-   ....+|.++|.+++|+|++++|++|+ |+++++|++.++..+..+.......     ..+    
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-----~~~----  111 (393)
T 1erj_A           42 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-----KDP----  111 (393)
T ss_dssp             EEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------
T ss_pred             EEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc-----ccc----
Confidence            3366654433211   12236999999999999999999986 7899999999887665543211000     000    


Q ss_pred             EEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEEC
Q psy13076        105 FLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWS  184 (423)
Q Consensus       105 ~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s  184 (423)
                                    +. ........+...|++++|+|+|++|++|+.|++|++||+.+.+...  .+..+...|.+++|+
T Consensus       112 --------------~~-~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~  174 (393)
T 1erj_A          112 --------------EN-LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM--ILQGHEQDIYSLDYF  174 (393)
T ss_dssp             ------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEC
T ss_pred             --------------cc-ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE--EEccCCCCEEEEEEc
Confidence                          00 0000112344569999999999999999999999999997765432  223334445555555


Q ss_pred             CCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccC
Q psy13076        185 PDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRF  264 (423)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~  264 (423)
                      |+                                            +.. +++++.|+++++||....+...... +...
T Consensus       175 p~--------------------------------------------~~~-l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~  208 (393)
T 1erj_A          175 PS--------------------------------------------GDK-LVSGSGDRTVRIWDLRTGQCSLTLS-IEDG  208 (393)
T ss_dssp             TT--------------------------------------------SSE-EEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred             CC--------------------------------------------CCE-EEEecCCCcEEEEECCCCeeEEEEE-cCCC
Confidence            54                                            432 6778899999999987766554443 4567


Q ss_pred             eEEEEECC-CCCEEEEEEecCeEEEEECCCccceecccc-----cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        265 VQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGN-----PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       265 i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      +.+++|+| +|++|++|+.||.|++||.++++.+..+..     .+|...|.+++|+|++++|++++.|++|++||+++.
T Consensus       209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            89999999 899999999999999999998877655421     368899999999999999999999999999999764


Q ss_pred             ce------------eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecC----
Q psy13076        339 SA------------VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP----  402 (423)
Q Consensus       339 ~~------------i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp----  402 (423)
                      ..            ...+. ++......+...+++.+|++++.|+.+++||..++ .++..+.+|...|++++|+|    
T Consensus       289 ~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~~~~  366 (393)
T 1erj_A          289 NNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSL  366 (393)
T ss_dssp             ------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTT
T ss_pred             CCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECCCCCCEEEEEecCCcCc
Confidence            32            22221 22223344566678999999999999999999885 45678899999999999986    


Q ss_pred             --CCCeEEEecCCCcEEEeeCC
Q psy13076        403 --DRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       403 --~~~~l~s~s~D~~i~~W~~~  422 (423)
                        ++++|+|||.||+|++|+..
T Consensus       367 ~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          367 GPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             CTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCCCEEEEECCCCcEEECccc
Confidence              68899999999999999964

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.8e-40  Score=329.33  Aligned_cols=332  Identities=31%  Similarity=0.609  Sum_probs=278.3

Q ss_pred             ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc
Q psy13076         44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI  123 (423)
Q Consensus        44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  123 (423)
                      ..|.+.|.+++|+|++++|++++ |+.|++||++++..                                      ..+.
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~--------------------------------------~~~~   55 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS--------------------------------------KVPP   55 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC--------------------------------------SSCS
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC--------------------------------------cccc
Confidence            36899999999999999999998 88999999876410                                      0012


Q ss_pred             cccccCCcce-EEEEEECC--CCCEEEEEccCCcEEEEEcCCC------ceeEEeeecCCCCCeeEEEECCCCCeEEEEE
Q psy13076        124 SDIYTEHSCA-VNVAKYSP--SGFYIASGDISGKVRIWDTVNK------EHILKNEFHPIGGPIKDIAWSPDNQRMVVVG  194 (423)
Q Consensus       124 ~~~~~~h~~~-i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~  194 (423)
                      ...+.+|... |++++|+|  ++++|++++.|++|++||+.++      +......+..+..+|.+++|+|+++.+++++
T Consensus        56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  135 (615)
T 1pgu_A           56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  135 (615)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence            2345689999 99999999  9999999999999999999754      3333445555678999999999999999998


Q ss_pred             cCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc---CeEEEEEC
Q psy13076        195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR---FVQAVRYS  271 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~---~i~~l~~s  271 (423)
                      .+.+..+.++.++.+..+..+..|...|.+++|+|+++..+++++.|+.+++|+....+....+..|..   .|.+++|+
T Consensus       136 ~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (615)
T 1pgu_A          136 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS  215 (615)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred             cCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC
Confidence            776656678888888888889999999999999999987799999999999999988888888888888   99999999


Q ss_pred             CC-CCEEEEEEecCeEEEEECCCccceeccccc--ccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCc
Q psy13076        272 PS-GSHFASAGFDGKVFLYDGASADLVSELGNP--AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN  348 (423)
Q Consensus       272 ~~-g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~  348 (423)
                      |+ +++|++++.||.|++||..+++.+..+...  .|...|.+++|+ ++++|++++.|++|++||+.+++.+..+....
T Consensus       216 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  294 (615)
T 1pgu_A          216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK  294 (615)
T ss_dssp             STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence            99 999999999999999999999887766321  588999999999 99999999999999999999998887775441


Q ss_pred             ---eeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        349 ---QVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       349 ---~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                         ......+.. +++..+++++.++.+++||+.+. .++..+.+|..+|++++| |+   |++++.||.|++|++
T Consensus       295 ~~~~~~~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~  364 (615)
T 1pgu_A          295 QQLGNQQVGVVA-TGNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSS  364 (615)
T ss_dssp             TCGGGCEEEEEE-EETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTT
T ss_pred             CcccCceeEEEe-CCCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEc
Confidence               111122222 38999999999999999999873 456778899999999999 87   778888888888875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.5e-40  Score=298.63  Aligned_cols=280  Identities=18%  Similarity=0.235  Sum_probs=232.1

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      .++++|||.+||+++.||.|++||+.+ ..++..+++|..+|.+++|+|++++|++|+.|++|++||+++++.+.     
T Consensus        18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~-----   91 (304)
T 2ynn_A           18 GIDFHPTEPWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-----   91 (304)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-----
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCC-CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE-----
Confidence            566778999999999999999999976 45677899999999999999999999999999999999998754332     


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                                                           .+.+|...|++++|+|+++++++|+.|++|++||+++.... .
T Consensus        92 -------------------------------------~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~  133 (304)
T 2ynn_A           92 -------------------------------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-E  133 (304)
T ss_dssp             -------------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE-E
T ss_pred             -------------------------------------EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch-h
Confidence                                                 34579999999999999999999999999999999876433 2


Q ss_pred             eeecCCCCCeeEEEECC-CCCeEEEEEcCCceeeEEEeecCCcceeccc-CCCcceeEEEEecCC-CeeEEEEeCCCeEE
Q psy13076        169 NEFHPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEIS-GQSKPINSCDFKPSR-PFRIITGSEDNTIA  245 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~~~s~s~d~~i~  245 (423)
                      ..+..+...|.+++|+| ++..+++++.+  ....+|+...+.....+. .+...+..+.++|.. ...+++++.|++|+
T Consensus       134 ~~~~~h~~~v~~v~~~p~~~~~l~sgs~D--~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~  211 (304)
T 2ynn_A          134 QTFEGHEHFVMCVAFNPKDPSTFASGCLD--RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK  211 (304)
T ss_dssp             EEECCCCSCEEEEEECTTCTTEEEEEETT--SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred             hhhcccCCcEEEEEECCCCCCEEEEEeCC--CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence            34556778899999999 46667766544  345778776655544443 456788999998742 23589999999999


Q ss_pred             EEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC--eEEE
Q psy13076        246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT--QLLT  323 (423)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~s  323 (423)
                      +||....+....+..|...|.+++|+|++++|++|+.||.|++||.++++....+.  .|...+++++|+|++.  ++++
T Consensus       212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~as  289 (304)
T 2ynn_A          212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIAS  289 (304)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--CSSSSEEEEEECTTCGGGCEEE
T ss_pred             EEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc--CCCccEEEEEECCCCCceEEEE
Confidence            99998888888889999999999999999999999999999999999999888774  5778899999999875  5777


Q ss_pred             EeCCCcEEEEecCC
Q psy13076        324 ASGDKTCKLWDIET  337 (423)
Q Consensus       324 ~s~d~~i~iwd~~~  337 (423)
                      |+.|+ +.+|++..
T Consensus       290 g~~~g-~~~~~~~~  302 (304)
T 2ynn_A          290 GFDNG-FTVLSLGN  302 (304)
T ss_dssp             EETTE-EEEEECC-
T ss_pred             ecCCc-eEEEEecc
Confidence            76555 77787754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-42  Score=331.38  Aligned_cols=326  Identities=12%  Similarity=0.033  Sum_probs=216.5

Q ss_pred             EeCCEEEEEeccceEEEEeccCCCCc---eeecccccCceeEEEEeCC------CCeEEEecCCCceEEeecCCcceeec
Q psy13076         14 WQGDYLLTVSLSGFISYLDVNNPSTP---IRVIKGHNKPITALALSPD------RGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus        14 ~~~~~~~~~~~dg~i~~~d~~~~~~~---~~~~~gh~~~V~~l~~~~~------~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      +++.++++++.||.|+|||+.++...   ..++.+|.+.|.+++|+|+      +.+||||+.||+|++||+.++.....
T Consensus       171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~  250 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH  250 (524)
T ss_dssp             -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred             hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence            45667888999999999999764322   2356788999999999996      57999999999999999976431100


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE  164 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~  164 (423)
                      .                   .          ..+  ......+.+|...|++++|+|++ +|++|+.||+|++||+++..
T Consensus       251 ~-------------------~----------~~~--~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~  298 (524)
T 2j04_B          251 V-------------------F----------KMC--EKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE  298 (524)
T ss_dssp             E-------------------E----------ECC--CSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS
T ss_pred             c-------------------c----------eee--cCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC
Confidence            0                   0          000  01123467899999999999864 89999999999999987542


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEE--EEecCCCeeEEEEeCCC
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSC--DFKPSRPFRIITGSEDN  242 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~s~s~d~  242 (423)
                      .. ...+                                            ..|...|.++  .|+|++...+++++.|+
T Consensus       299 ~~-~~~~--------------------------------------------~~H~~~V~sv~~~~s~~g~~~laS~S~D~  333 (524)
T 2j04_B          299 VP-SFYD--------------------------------------------QVHDSYILSVSTAYSDFEDTVVSTVAVDG  333 (524)
T ss_dssp             SC-SEEE--------------------------------------------ECSSSCEEEEEEECCTTSCCEEEEEETTS
T ss_pred             Cc-eEEe--------------------------------------------ecccccEEEEEEEcCCCCCeEEEEeccCC
Confidence            11 0111                                            1233445555  33444423588999999


Q ss_pred             eEEEEcCCCceeeeecccccc--CeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCe
Q psy13076        243 TIAVFEGPPFKFKMTKQEHSR--FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ  320 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~--~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~  320 (423)
                      ++++||.+..+....+..|..  .+.+++|+|+++.+++++.|+.|++||.+++.....+.  +|.+.|.+++|+|+|++
T Consensus       334 tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~--gH~~~V~sva~Sp~g~~  411 (524)
T 2j04_B          334 YFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV--SRETTITAIGVSRLHPM  411 (524)
T ss_dssp             EEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE--ECSSCEEEEECCSSCCB
T ss_pred             eEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee--cCCCceEEEEeCCCCCe
Confidence            999999876554434444432  47889999999999999999999999999988766664  59999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCcceeeeeeeC----ceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCcee
Q psy13076        321 LLTASGDKTCKLWDIETKSAVSEFLMG----NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPIT  396 (423)
Q Consensus       321 l~s~s~d~~i~iwd~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~  396 (423)
                      |++|+.|++|++||+..+ .+......    .......+.+.++|+.+. ...  ...+|+.......+..+.+|..+|+
T Consensus       412 l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~  487 (524)
T 2j04_B          412 VLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINIT  487 (524)
T ss_dssp             CEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCC
T ss_pred             EEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEE
Confidence            999999999999998654 22211100    001122344455666332 211  1222322212344567899999999


Q ss_pred             EEEecCCCC---eEEEecCCCcEEEeeCC
Q psy13076        397 ALALSPDRG---TVFTGSHDGFITRWNAK  422 (423)
Q Consensus       397 ~i~~sp~~~---~l~s~s~D~~i~~W~~~  422 (423)
                      +++|+|+++   +|++|+.||+|++|++.
T Consensus       488 ~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          488 CTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             CEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             EEECCCCCCccHHHHhhccCceEEEEEcc
Confidence            999999965   89999999999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=9.5e-41  Score=312.01  Aligned_cols=292  Identities=20%  Similarity=0.266  Sum_probs=236.9

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      ++++++||++|++|+.||.|++||+.+ .+....+++|...|.+++|+|++++|++|+.|++|++||+.+.....     
T Consensus        71 ~~~~sp~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~-----  144 (380)
T 3iz6_a           71 SLDWTPEKNWIVSASQDGRLIVWNALT-SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD-----  144 (380)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC-----
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCC-CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc-----
Confidence            445556999999999999999999976 45677899999999999999999999999999999999987532100     


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC-CCEEEEEccCCcEEEEEcCCCceeE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHIL  167 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~~~~  167 (423)
                                                    ........+.+|...|.++.|+|+ +..+++|+.|++|++||+.+++...
T Consensus       145 ------------------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~  194 (380)
T 3iz6_a          145 ------------------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS  194 (380)
T ss_dssp             ------------------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred             ------------------------------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE
Confidence                                          011234567899999999999996 5679999999999999998877654


Q ss_pred             Eeee---cCCCCCeeEEEECC-CCCeEEEEEcCCceeeEEEeec-CCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076        168 KNEF---HPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSE-TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       168 ~~~~---~~~~~~v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                      ....   ..+...|.+++|+| ++..+++++.+.  ..++|+.. .+..+..+.+|...|.+++|+|++.+ +++++.|+
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~--~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~  271 (380)
T 3iz6_a          195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDT--TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDG  271 (380)
T ss_dssp             EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS--CEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEECSSS
T ss_pred             EeecccCCCCccCeEEEEeecCCCCEEEEEECCC--eEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEcCCC
Confidence            3211   34567899999987 667776665443  45678765 45667778899999999999999875 89999999


Q ss_pred             eEEEEcCCCceeeeecccc-------ccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc--cccCCCeEEEE
Q psy13076        243 TIAVFEGPPFKFKMTKQEH-------SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN--PAHKGGVYAVA  313 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~-------~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~i~~l~  313 (423)
                      +|++||.........+..+       ...+++++|+|+|++|++|+.||.|++||..+++....+..  .+|.+.|.+++
T Consensus       272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~  351 (380)
T 3iz6_a          272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG  351 (380)
T ss_dssp             CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred             eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence            9999998776554433322       23588999999999999999999999999988877655421  46899999999


Q ss_pred             ECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076        314 WKPDGTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       314 ~~~~~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      |+|+|++|++|+.|++|++|++...+
T Consensus       352 ~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          352 LSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             ECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            99999999999999999999998654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-39  Score=301.75  Aligned_cols=301  Identities=17%  Similarity=0.262  Sum_probs=235.9

Q ss_pred             eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076         40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE  119 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  119 (423)
                      ...|++|.++|++++|+|++++|++|+.|+.|++||+.+++...                                    
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------------------   68 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG------------------------------------   68 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE------------------------------------
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh------------------------------------
Confidence            34689999999999999999999999999999999987754332                                    


Q ss_pred             CCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC--
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR--  197 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~--  197 (423)
                            .+.+|...|.+++|+|++++|++++.|++|++||+.+.+......   ...++.+++|+|+++.+++++...  
T Consensus        69 ------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~  139 (369)
T 3zwl_B           69 ------TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK---SPVPVKRVEFSPCGNYFLAILDNVMK  139 (369)
T ss_dssp             ------EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSSEEEEEECCBTT
T ss_pred             ------hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---cCCCeEEEEEccCCCEEEEecCCccC
Confidence                  345688999999999999999999999999999998877654433   457899999999998887765430  


Q ss_pred             -ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc--CeEEEEECCCC
Q psy13076        198 -ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR--FVQAVRYSPSG  274 (423)
Q Consensus       198 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~--~i~~l~~s~~g  274 (423)
                       .....+|+.........                    +         ......   .......+..  .+.+++|+|++
T Consensus       140 ~~g~i~~~d~~~~~~~~~--------------------~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  187 (369)
T 3zwl_B          140 NPGSINIYEIERDSATHE--------------------L---------TKVSEE---PIHKIITHEGLDAATVAGWSTKG  187 (369)
T ss_dssp             BCCEEEEEEEEECTTTCC--------------------E---------EEECSS---CSEEEECCTTCCCEEEEEECGGG
T ss_pred             CCCEEEEEEecCCcccee--------------------e---------cccccc---eeeeccCCcCccceeEEEEcCCC
Confidence             01122333221111000                    0         000000   0111222333  79999999999


Q ss_pred             CEEEEEEecCeEEEEECCC-ccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEee
Q psy13076        275 SHFASAGFDGKVFLYDGAS-ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQ  353 (423)
Q Consensus       275 ~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~  353 (423)
                      +++++++.||.|++||..+ .+....+.  .|...|.+++|+|++++|++++.|+.|++||+++++.+..+....  ...
T Consensus       188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~~  263 (369)
T 3zwl_B          188 KYIIAGHKDGKISKYDVSNNYEYVDSID--LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC--PLN  263 (369)
T ss_dssp             CEEEEEETTSEEEEEETTTTTEEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--CEE
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEEEe--cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC--Cce
Confidence            9999999999999999988 55555553  588899999999999999999999999999999998888776433  334


Q ss_pred             EEEEEecCcEEEEEeCCC--------------cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEe
Q psy13076        354 QVSCLWQGDYLLTVSLSG--------------FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW  419 (423)
Q Consensus       354 ~~~~~~~g~~l~~~~~~~--------------~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W  419 (423)
                      .+.+.+++.++++++.++              .+++||..+. .++..+.+|...|++++|+|++++|++++.||.|++|
T Consensus       264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw  342 (369)
T 3zwl_B          264 TAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLH  342 (369)
T ss_dssp             EEEECSSSSEEEEEECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEE
Confidence            566678999999999888              7999998875 4567889999999999999999999999999999999


Q ss_pred             eCC
Q psy13076        420 NAK  422 (423)
Q Consensus       420 ~~~  422 (423)
                      +++
T Consensus       343 ~~~  345 (369)
T 3zwl_B          343 HFE  345 (369)
T ss_dssp             EEC
T ss_pred             ECc
Confidence            975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1e-39  Score=297.59  Aligned_cols=279  Identities=17%  Similarity=0.298  Sum_probs=226.6

Q ss_pred             eEEEEe-CCEEEEEeccceEEEEeccCCC----CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076         10 VSCLWQ-GDYLLTVSLSGFISYLDVNNPS----TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus        10 ~~~~~~-~~~~~~~~~dg~i~~~d~~~~~----~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      +++.++ +++|++|+.||.|++||+....    .++..+++|..+|.+++|+|++++|+||+.|++|++||+++++.+. 
T Consensus        23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~-  101 (319)
T 3frx_A           23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-  101 (319)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-
T ss_pred             EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE-
Confidence            444454 5899999999999999986422    2466899999999999999999999999999999999998764432 


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE  164 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~  164 (423)
                                                               .+.+|...|.+++|+|++.++++++.|++|++||++.. 
T Consensus       102 -----------------------------------------~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-  139 (319)
T 3frx_A          102 -----------------------------------------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-  139 (319)
T ss_dssp             -----------------------------------------EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-
T ss_pred             -----------------------------------------EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-
Confidence                                                     34579999999999999999999999999999998643 


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCC------eEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEE
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQ------RMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG  238 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~  238 (423)
                      ..  ..+..+...|.+++|+|..+      .+++++.+  ....+|+.........+.+|...|.+++|+|++.+ ++++
T Consensus       140 ~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~  214 (319)
T 3frx_A          140 CL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASA  214 (319)
T ss_dssp             EE--EEECCCSSCEEEEEECCC------CCEEEEEETT--SCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSE-EEEE
T ss_pred             eE--EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCC--CEEEEEECCcchhheeecCCCCcEEEEEEcCCCCE-EEEE
Confidence            22  23445678899999999643      55655543  34678888877777788899999999999999885 8999


Q ss_pred             eCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc------cccCCCeEEE
Q psy13076        239 SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN------PAHKGGVYAV  312 (423)
Q Consensus       239 s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~------~~~~~~i~~l  312 (423)
                      +.|+.|++||....+....+.. ...+.+++|+|++.++++++. +.+++|+.........+..      ..|...+.++
T Consensus       215 ~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  292 (319)
T 3frx_A          215 GKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL  292 (319)
T ss_dssp             ETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEE
T ss_pred             eCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEE
Confidence            9999999999887776665554 457999999999999988765 4599999887665444321      2456778999


Q ss_pred             EECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        313 AWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       313 ~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      +|+|+|++|++|+.|++|++||+.+.
T Consensus       293 ~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          293 AWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EECCCCCEEEEeecCceEEEEEEeec
Confidence            99999999999999999999998653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.5e-40  Score=316.43  Aligned_cols=297  Identities=17%  Similarity=0.181  Sum_probs=221.0

Q ss_pred             eeecccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         40 IRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      .....+|.+.|++|+|+| ++.+||+|+.||+|++||+.++....                                   
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-----------------------------------  156 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-----------------------------------  156 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-----------------------------------
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-----------------------------------
Confidence            345568999999999999 46689999999999999987642111                                   


Q ss_pred             CCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                           ...+.+|...|++++|+| ++.+|+|++.|++|++||++..........+...                      
T Consensus       157 -----~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~----------------------  209 (435)
T 4e54_B          157 -----FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTIN----------------------  209 (435)
T ss_dssp             -----EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCS----------------------
T ss_pred             -----EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCC----------------------
Confidence                 112457999999999998 7899999999999999998654322111111111                      


Q ss_pred             ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC-E
Q psy13076        198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS-H  276 (423)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~  276 (423)
                                            ..+.+++|+|++.+ +++|+.|+.|++|+... +....+..|...|++++|+|++. +
T Consensus       210 ----------------------~~~~~~~~~~~~~~-l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~  265 (435)
T 4e54_B          210 ----------------------IWFCSLDVSASSRM-VVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWF  265 (435)
T ss_dssp             ----------------------CCCCCEEEETTTTE-EEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred             ----------------------ccEEEEEECCCCCE-EEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceE
Confidence                                  12344556665554 77889999999999754 33456678999999999999987 7


Q ss_pred             EEEEEecCeEEEEECCCccceecc-cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCcee-----
Q psy13076        277 FASAGFDGKVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQV-----  350 (423)
Q Consensus       277 l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~-----  350 (423)
                      +++|+.|+.|++||+++.+....+ ...+|...|.+++|+|+|++|++++.|++|++||+.++++...+......     
T Consensus       266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~  345 (435)
T 4e54_B          266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHL  345 (435)
T ss_dssp             EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred             EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccc
Confidence            889999999999999877654333 22468899999999999999999999999999999998776655322111     


Q ss_pred             EeeEEEEEecCcEEEEEe------------CCCcEEEEecCCCCCceEEeccCCCceeEE-EecCCCCeEEEecCCCcEE
Q psy13076        351 EDQQVSCLWQGDYLLTVS------------LSGFISYLDVNNPSTPIRVIKGHNKPITAL-ALSPDRGTVFTGSHDGFIT  417 (423)
Q Consensus       351 ~~~~~~~~~~g~~l~~~~------------~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i-~~sp~~~~l~s~s~D~~i~  417 (423)
                      ........+++..++++.            .++.|++||..++........+|...|.++ +|+|++++|++|+ |+.|+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~  424 (435)
T 4e54_B          346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHIL  424 (435)
T ss_dssp             CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEE
T ss_pred             eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEE
Confidence            111122233555555543            235799999988655433346899999998 6999999999876 78999


Q ss_pred             EeeCCC
Q psy13076        418 RWNAKT  423 (423)
Q Consensus       418 ~W~~~~  423 (423)
                      +|++++
T Consensus       425 iW~~~~  430 (435)
T 4e54_B          425 IWSQQE  430 (435)
T ss_dssp             ECCCC-
T ss_pred             EEECCc
Confidence            999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.7e-39  Score=331.53  Aligned_cols=370  Identities=15%  Similarity=0.175  Sum_probs=298.0

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec-CCeEEEE
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIR  116 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~  116 (423)
                      +..+.+++|.++|++++|+|++++|++|+.||+|++||++++.....+.. +.+....+.++|+++.++..+ +..+.+|
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            45678999999999999999999999999999999999999887777653 345566788999998877754 6789999


Q ss_pred             ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC-CCCeEEEEEc
Q psy13076        117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMVVVGE  195 (423)
Q Consensus       117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~~~~~~~  195 (423)
                      ++++++....+.+|...|++++|+|+++++++++.|++|++||+.+.... ...+..+..+|.+++|+| ++..+++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-EQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE-EEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE-EEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            99999999999999999999999999999999999999999999875332 233445668899999999 7777777664


Q ss_pred             CCceeeEEEeecCCcceecccCCC-cceeEEEEec--CCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECC
Q psy13076        196 GRERFGHVFMSETGTSVGEISGQS-KPINSCDFKP--SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP  272 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~  272 (423)
                      +.  ...+|+...+.....+..+. ..+.+++|+|  ++++ +++++.|+.|++|+............|...|.+++|+|
T Consensus       162 dg--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  238 (814)
T 3mkq_A          162 DR--TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP  238 (814)
T ss_dssp             TS--EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE-EEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             CC--eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE-EEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence            43  35677776666655555444 7899999999  6664 88999999999999888777777888999999999999


Q ss_pred             CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCe-EEEEeCCCcEEEEecCCcceeeeeee-----
Q psy13076        273 SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ-LLTASGDKTCKLWDIETKSAVSEFLM-----  346 (423)
Q Consensus       273 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-l~s~s~d~~i~iwd~~~~~~i~~~~~-----  346 (423)
                      +|+++++++.||.|++||..+++....+.  .|...+.+++|+|+++. +++++.|+.+.+|++........+..     
T Consensus       239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  316 (814)
T 3mkq_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLV  316 (814)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCSEEEEEC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEE
Confidence            99999999999999999999988877764  47789999999999873 24555577789998765432111100     


Q ss_pred             -------------------------------------CceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEec
Q psy13076        347 -------------------------------------GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK  389 (423)
Q Consensus       347 -------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~  389 (423)
                                                           ........+.+.++|.++++++ ++.+.+|++....      .
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~------~  389 (814)
T 3mkq_A          317 WSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR------N  389 (814)
T ss_dssp             EECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE------E
T ss_pred             EECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc------c
Confidence                                                 0001123566677999999888 8999999975421      2


Q ss_pred             cCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        390 GHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       390 ~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      .|.+.|++++|+|++++|++++.|+.|++|+.
T Consensus       390 ~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~  421 (814)
T 3mkq_A          390 KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN  421 (814)
T ss_dssp             EEEEECSEEEECTTSSCEEEECTTCCEEEEET
T ss_pred             cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC
Confidence            34567999999999999999999999999963

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-39  Score=310.98  Aligned_cols=332  Identities=17%  Similarity=0.253  Sum_probs=258.3

Q ss_pred             eEEE-EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076         10 VSCL-WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus        10 ~~~~-~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      +.|. ++++++++|+.||.|++||+.+ .+++..+.+|.++|.+++|+|++ +|++|+.||+|++||+++++...     
T Consensus       125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~-----  197 (464)
T 3v7d_B          125 ITCLQFEDNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH-----  197 (464)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE-----
T ss_pred             EEEEEECCCEEEEEcCCCcEEEEECCC-CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE-----
Confidence            4444 6999999999999999999976 56788899999999999999987 99999999999999998764432     


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEEC--CCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS--PSGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~s--p~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                                                           .+.+|...|.+++|+  |++.++++++.|++|++||+.+....
T Consensus       198 -------------------------------------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~  240 (464)
T 3v7d_B          198 -------------------------------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV  240 (464)
T ss_dssp             -------------------------------------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred             -------------------------------------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence                                                 345688899999998  57899999999999999999876543


Q ss_pred             EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076        167 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV  246 (423)
Q Consensus       167 ~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~  246 (423)
                      ......   .....+.+.|++..                    .....+.+|...+.++  ++++. .+++++.|+.|++
T Consensus       241 ~~~~~~---~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~v  294 (464)
T 3v7d_B          241 PDHGEE---HDYPLVFHTPEENP--------------------YFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIV  294 (464)
T ss_dssp             ---------CCSSEEESCGGGCT--------------------TEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEE
T ss_pred             cccccc---CCcceEeeccCCCe--------------------EEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEE
Confidence            221111   11112222222111                    1123345566667666  44555 4899999999999


Q ss_pred             EcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC
Q psy13076        247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG  326 (423)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~  326 (423)
                      ||....+.......|...|.+++|+|+++++++|+.||.|++||..+++.+..+.  +|...|.+++|+  +++|++++.
T Consensus       295 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~--~~~l~s~s~  370 (464)
T 3v7d_B          295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ--GHTALVGLLRLS--DKFLVSAAA  370 (464)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC--SSEEEEEET
T ss_pred             EECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCcEEEEEEc--CCEEEEEeC
Confidence            9998888888888899999999999999999999999999999999998887774  688999999997  579999999


Q ss_pred             CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCe
Q psy13076        327 DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT  406 (423)
Q Consensus       327 d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~  406 (423)
                      |++|++||+.+...........  ......+.+++..+++++ ++.+++||+.+++.....+.+|..+|++++|+ +..+
T Consensus       371 dg~v~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l  446 (464)
T 3v7d_B          371 DGSIRGWDANDYSRKFSYHHTN--LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTL  446 (464)
T ss_dssp             TSEEEEEETTTCCEEEEEECTT--CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEE
T ss_pred             CCcEEEEECCCCceeeeecCCC--CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEE
Confidence            9999999999887655543332  233445667999999988 89999999998654332367899999999998 4455


Q ss_pred             EEEecCCCcEEEe
Q psy13076        407 VFTGSHDGFITRW  419 (423)
Q Consensus       407 l~s~s~D~~i~~W  419 (423)
                      +++++.|+.+.+|
T Consensus       447 ~~~~~~~g~~~i~  459 (464)
T 3v7d_B          447 VAAVEKDGQSFLE  459 (464)
T ss_dssp             EEEEEETTEEEEE
T ss_pred             EEEEEeCCeEEEE
Confidence            5666777766554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.2e-40  Score=330.82  Aligned_cols=293  Identities=25%  Similarity=0.377  Sum_probs=225.5

Q ss_pred             CCEEEEEeccceEEEEeccCCCC----ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCC
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPST----PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG   91 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~----~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~   91 (423)
                      +++|++|+.||.|++||+.....    ....+.+|.+.|.+++|+|++++|+||+.|++|++||+.++....        
T Consensus       395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~--------  466 (694)
T 3dm0_A          395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR--------  466 (694)
T ss_dssp             CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--------
T ss_pred             CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee--------
Confidence            58999999999999999875332    345789999999999999999999999999999999998754322        


Q ss_pred             CceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee
Q psy13076         92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF  171 (423)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  171 (423)
                                                        .+.+|...|.+++|+|++++|+|++.|++|++||........ ...
T Consensus       467 ----------------------------------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~-~~~  511 (694)
T 3dm0_A          467 ----------------------------------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT-ISE  511 (694)
T ss_dssp             ----------------------------------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-ECS
T ss_pred             ----------------------------------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-ecc
Confidence                                              345799999999999999999999999999999975322110 000


Q ss_pred             cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCC-CeeEEEEeCCCeEEEEcCC
Q psy13076        172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSR-PFRIITGSEDNTIAVFEGP  250 (423)
Q Consensus       172 ~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~s~d~~i~~~~~~  250 (423)
                                                                ...+|...|.+++|+|++ ...+++++.|++|++||..
T Consensus       512 ------------------------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~  549 (694)
T 3dm0_A          512 ------------------------------------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS  549 (694)
T ss_dssp             ------------------------------------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT
T ss_pred             ------------------------------------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC
Confidence                                                      011344455566666654 2358899999999999998


Q ss_pred             CceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076        251 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC  330 (423)
Q Consensus       251 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i  330 (423)
                      ..+....+..|...|++++|+|+|++|++|+.||.|++||+.+++.+..+.   +...+.+++|+|++.+|++++ |+.|
T Consensus       550 ~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~-~~~i  625 (694)
T 3dm0_A          550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE---ANSVIHALCFSPNRYWLCAAT-EHGI  625 (694)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB---CSSCEEEEEECSSSSEEEEEE-TTEE
T ss_pred             CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec---CCCcEEEEEEcCCCcEEEEEc-CCCE
Confidence            888888888999999999999999999999999999999999998776663   456799999999998887765 5669


Q ss_pred             EEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe
Q psy13076        331 KLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG  410 (423)
Q Consensus       331 ~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~  410 (423)
                      ++||+++++.+..+..........  .                     .. .. ......|.-.+++++|+||+++|+||
T Consensus       626 ~iwd~~~~~~~~~~~~~~~~~~~~--~---------------------~~-~~-~~~~~~~~~~~~~l~~spdg~~l~sg  680 (694)
T 3dm0_A          626 KIWDLESKSIVEDLKVDLKAEAEK--A---------------------DN-SG-PAATKRKVIYCTSLNWSADGSTLFSG  680 (694)
T ss_dssp             EEEETTTTEEEEEECCCCC-----------------------------------------CCCCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCChhhhcccccccccc--c---------------------cc-cc-cccCCceeEEeeeEEEcCCCCEEEEE
Confidence            999999988776653221110000  0                     00 00 01112344468999999999999999


Q ss_pred             cCCCcEEEeeCC
Q psy13076        411 SHDGFITRWNAK  422 (423)
Q Consensus       411 s~D~~i~~W~~~  422 (423)
                      |.||+|++|++.
T Consensus       681 s~Dg~i~iW~i~  692 (694)
T 3dm0_A          681 YTDGVIRVWGIG  692 (694)
T ss_dssp             ETTSEEEEEEC-
T ss_pred             cCCCeEEEEecc
Confidence            999999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-39  Score=297.18  Aligned_cols=291  Identities=22%  Similarity=0.336  Sum_probs=217.1

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCC-Cceeec-cc-ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVI-KG-HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~-~g-h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      .+.++.+.+++||+|+.||.|++||+..+. +....+ .+ |.++|.+++|+|++++|++|+.|++|++||.+.....  
T Consensus        16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~--   93 (330)
T 2hes_X           16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR--   93 (330)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--------
T ss_pred             ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc--
Confidence            344556666699999999999999997543 344455 45 9999999999999999999999999999998642100  


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC-
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK-  163 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~-  163 (423)
                                                       .........+.+|...|.+++|+|++++|++++.|++|++||+... 
T Consensus        94 ---------------------------------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~  140 (330)
T 2hes_X           94 ---------------------------------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG  140 (330)
T ss_dssp             ----------------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred             ---------------------------------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence                                             0011223456789999999999999999999999999999998532 


Q ss_pred             c-eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC--cceecccCCCcceeEEEEecCC-CeeEEEEe
Q psy13076        164 E-HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG--TSVGEISGQSKPINSCDFKPSR-PFRIITGS  239 (423)
Q Consensus       164 ~-~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~s  239 (423)
                      . ......+..+...|.+++|+|++..+++++.+.  ..++|+...+  ..+..+.+|...|.+++|+|+. ...+++++
T Consensus       141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~--~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  218 (330)
T 2hes_X          141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD--TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS  218 (330)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS--CEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE
T ss_pred             CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC--eEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe
Confidence            1 122234556778899999999999988877554  3567776554  4667788999999999999984 24589999


Q ss_pred             CCCeEEEEcCCCc--------eeeeeccc-cccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc--ceecccccccCC-
Q psy13076        240 EDNTIAVFEGPPF--------KFKMTKQE-HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELGNPAHKG-  307 (423)
Q Consensus       240 ~d~~i~~~~~~~~--------~~~~~~~~-~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~~-  307 (423)
                      .|++|++|+....        .....+.. |...|.+++|++++ +|++++.||.|++|+..+++  ...... ..|.. 
T Consensus       219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~h~~~  296 (330)
T 2hes_X          219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA-LCHGVY  296 (330)
T ss_dssp             TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-CTTTTS
T ss_pred             CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-cccccc
Confidence            9999999986432        22233333 88899999999765 89999999999999987763  222221 35766 


Q ss_pred             CeEEEEECC--CCCeEEEEeCCCcEEEEecCC
Q psy13076        308 GVYAVAWKP--DGTQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       308 ~i~~l~~~~--~~~~l~s~s~d~~i~iwd~~~  337 (423)
                      .|.+++|+|  ++++|++++.|++|++||++.
T Consensus       297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            899999999  789999999999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.3e-39  Score=299.56  Aligned_cols=282  Identities=18%  Similarity=0.209  Sum_probs=234.7

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      ++++++||++|++|+.||.|++||..+ .+....+..|...|.+++|+|++.+|++|+.|+++++|++.......     
T Consensus        69 ~~~~s~d~~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~-----  142 (354)
T 2pbi_B           69 CMDWCKDKRRIVSSSQDGKVIVWDSFT-TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN-----  142 (354)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC-----
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCC-CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc-----
Confidence            445556999999999999999999875 45566888999999999999999999999999999999986431100     


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                                                     .......+.+|...|.++.|+|++.++++++.|++|++||+++++... 
T Consensus       143 -------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~-  190 (354)
T 2pbi_B          143 -------------------------------MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ-  190 (354)
T ss_dssp             -------------------------------SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred             -------------------------------ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-
Confidence                                           011223455799999999999999999999999999999998877654 


Q ss_pred             eeecCCCCCeeEEEECCC--CCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076        169 NEFHPIGGPIKDIAWSPD--NQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV  246 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~  246 (423)
                       .+..+...|.+++|+|+  +..+++++.+  ....+|+..++..+..+..|...|.+++|+|++.. +++++.|+++++
T Consensus       191 -~~~~h~~~v~~~~~~~~~~g~~l~sgs~D--g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~v~l  266 (354)
T 2pbi_B          191 -SFHGHGADVLCLDLAPSETGNTFVSGGCD--KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA-FASGSDDATCRL  266 (354)
T ss_dssp             -EEECCSSCEEEEEECCCSSCCEEEEEETT--SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred             -EEcCCCCCeEEEEEEeCCCCCEEEEEeCC--CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCE-EEEEeCCCeEEE
Confidence             34456788999999884  5677776644  34678888888888888999999999999999875 899999999999


Q ss_pred             EcCCCceeeeecc--ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEE
Q psy13076        247 FEGPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA  324 (423)
Q Consensus       247 ~~~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~  324 (423)
                      ||.+.........  .+...+.+++|+|+|++|++|+.|+.|++||..+++.+..+.  +|...|.+++|+|+|++|+++
T Consensus       267 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--~h~~~v~~l~~spdg~~l~sg  344 (354)
T 2pbi_B          267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--GHENRVSTLRVSPDGTAFCSG  344 (354)
T ss_dssp             EETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--CCSSCEEEEEECTTSSCEEEE
T ss_pred             EECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--CCCCcEEEEEECCCCCEEEEE
Confidence            9987655433332  233468899999999999999999999999999888777663  699999999999999999999


Q ss_pred             eCCCcEEEEe
Q psy13076        325 SGDKTCKLWD  334 (423)
Q Consensus       325 s~d~~i~iwd  334 (423)
                      +.|++|++|+
T Consensus       345 s~D~~v~vW~  354 (354)
T 2pbi_B          345 SWDHTLRVWA  354 (354)
T ss_dssp             ETTSEEEEEC
T ss_pred             cCCCCEEecC
Confidence            9999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8.7e-40  Score=305.82  Aligned_cols=293  Identities=17%  Similarity=0.193  Sum_probs=226.0

Q ss_pred             CceeecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076         38 TPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR  116 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  116 (423)
                      .+...+.+|.++|.+++|+|++ ++|++|+.|++|++||+.++.....+                               
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------------  112 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-------------------------------  112 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-------------------------------
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-------------------------------
Confidence            3456788999999999999998 89999999999999999865432211                               


Q ss_pred             ecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076        117 NIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE  195 (423)
Q Consensus       117 ~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~  195 (423)
                               .+.+|...|.+++|+| ++.++++++.|+.|++||+............                       
T Consensus       113 ---------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------------------  160 (383)
T 3ei3_B          113 ---------QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD-----------------------  160 (383)
T ss_dssp             ---------CCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCC-----------------------
T ss_pred             ---------ecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccC-----------------------
Confidence                     1236889999999999 7899999999999999998753211111111                       


Q ss_pred             CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC
Q psy13076        196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS  275 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  275 (423)
                                           .+...+.+++|+|++.+ +++++.|+.|++|+.. .+....+..|...|.+++|+|+++
T Consensus       161 ---------------------~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~  217 (383)
T 3ei3_B          161 ---------------------SWDYWYCCVDVSVSRQM-LATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD  217 (383)
T ss_dssp             ---------------------CSSCCEEEEEEETTTTE-EEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT
T ss_pred             ---------------------CCCCCeEEEEECCCCCE-EEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC
Confidence                                 12234555556665553 7788999999999974 455566778999999999999999


Q ss_pred             -EEEEEEecCeEEEEECCC----ccceecccccccCCCeEEEEECC-CCCeEEEEeCCCcEEEEecCCcceeeeeeeCce
Q psy13076        276 -HFASAGFDGKVFLYDGAS----ADLVSELGNPAHKGGVYAVAWKP-DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ  349 (423)
Q Consensus       276 -~l~s~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~  349 (423)
                       ++++++.|+.|++||+++    +..+..+   .|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.....
T Consensus       218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  294 (383)
T 3ei3_B          218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM---PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH  294 (383)
T ss_dssp             TEEEEEETTSEEEEEEGGGCCSTTCEEEEE---ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred             CEEEEEeCCCEEEEEeCCCCCcccceEEEe---cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence             999999999999999987    4444443   4889999999999 999999999999999999998877665542211


Q ss_pred             e----------------EeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc--CCCceeEEEecCCCCeEEEec
Q psy13076        350 V----------------EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG--HNKPITALALSPDRGTVFTGS  411 (423)
Q Consensus       350 ~----------------~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~l~s~s  411 (423)
                      .                ....+.+.++|.+  +++.++.|++||+.+.. .+..+.+  |...+..++|+|++++|++++
T Consensus       295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~-~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG-LVHQLRDPNAAGIISLNKFSPTGDVLASGM  371 (383)
T ss_dssp             CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC-EEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred             cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc-eeeeecCCCCCceEEEEEEecCccEEEEec
Confidence            0                0111223345555  66789999999998854 4567776  567788889999999999997


Q ss_pred             CCCcEEEeeCCC
Q psy13076        412 HDGFITRWNAKT  423 (423)
Q Consensus       412 ~D~~i~~W~~~~  423 (423)
                       |+.|++||+++
T Consensus       372 -d~~i~iw~~~~  382 (383)
T 3ei3_B          372 -GFNILIWNRED  382 (383)
T ss_dssp             -TTEEEEEECC-
T ss_pred             -CCcEEEEecCC
Confidence             99999999874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-39  Score=293.50  Aligned_cols=257  Identities=21%  Similarity=0.309  Sum_probs=197.6

Q ss_pred             eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076         40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE  119 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  119 (423)
                      +.++.+|.++|.+++|+|++++|+||+.|++|++||+++..                                       
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~---------------------------------------   42 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET---------------------------------------   42 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC---------------------------------------
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC---------------------------------------
Confidence            35788999999999999999999999999999999986421                                       


Q ss_pred             CCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                       .+....+.+|...|++++|+|+  +++|+||+.|++|++||+++++......+..+..+|.+++|+|+..         
T Consensus        43 -~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~---------  112 (297)
T 2pm7_B           43 -HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY---------  112 (297)
T ss_dssp             -BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGG---------
T ss_pred             -cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCC---------
Confidence             1123356789999999999874  8999999999999999987653211112222334444454444310         


Q ss_pred             ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce--eeeeccccccCeEEEEECCC--
Q psy13076        198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK--FKMTKQEHSRFVQAVRYSPS--  273 (423)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~--~~~~~~~~~~~i~~l~~s~~--  273 (423)
                                                       +. .+++++.|+.|++|+.+...  .......|...|.+++|+|+  
T Consensus       113 ---------------------------------g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  158 (297)
T 2pm7_B          113 ---------------------------------GP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (297)
T ss_dssp             ---------------------------------CS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred             ---------------------------------Cc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence                                             22 47788999999999875432  13445678889999999997  


Q ss_pred             -----------CCEEEEEEecCeEEEEECCCcc----ceecccccccCCCeEEEEECCCC---CeEEEEeCCCcEEEEec
Q psy13076        274 -----------GSHFASAGFDGKVFLYDGASAD----LVSELGNPAHKGGVYAVAWKPDG---TQLLTASGDKTCKLWDI  335 (423)
Q Consensus       274 -----------g~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~i~~l~~~~~~---~~l~s~s~d~~i~iwd~  335 (423)
                                 +++|++|+.|+.|++||.++++    ....+  .+|...|.+++|+|++   ++|++++.|++|++||+
T Consensus       159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~  236 (297)
T 2pm7_B          159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ  236 (297)
T ss_dssp             -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence                       5799999999999999988765    33334  4699999999999985   89999999999999998


Q ss_pred             CCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEE--eccCCCceeEEEecCCCCeEEEecCC
Q psy13076        336 ETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRV--IKGHNKPITALALSPDRGTVFTGSHD  413 (423)
Q Consensus       336 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~h~~~v~~i~~sp~~~~l~s~s~D  413 (423)
                      .+......                                         ...  ..+|...|++++|+|++++|++++.|
T Consensus       237 ~~~~~~~~-----------------------------------------~~~~~~~~~~~~v~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          237 DNEQGPWK-----------------------------------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             SSTTSCCE-----------------------------------------EEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred             CCCCCccc-----------------------------------------eeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence            76421000                                         001  14678899999999999999999999


Q ss_pred             CcEEEeeCC
Q psy13076        414 GFITRWNAK  422 (423)
Q Consensus       414 ~~i~~W~~~  422 (423)
                      ++|++|+..
T Consensus       276 ~~v~lw~~~  284 (297)
T 2pm7_B          276 NKVTLWKEN  284 (297)
T ss_dssp             SCEEEEEEC
T ss_pred             CcEEEEEEC
Confidence            999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2e-38  Score=302.70  Aligned_cols=308  Identities=18%  Similarity=0.298  Sum_probs=250.6

Q ss_pred             EEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCC
Q psy13076         12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG   91 (423)
Q Consensus        12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~   91 (423)
                      +.++|+++++|+.||.|++||+.+ .+++..+++|.++|.+++|+  +.+|++|+.||+|++||+++++...        
T Consensus       125 ~~~~g~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~--------  193 (445)
T 2ovr_B          125 LQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH--------  193 (445)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE--------
T ss_pred             EEEcCCEEEEEECCCcEEEEECCC-CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE--------
Confidence            446999999999999999999976 56788999999999999998  5699999999999999998764432        


Q ss_pred             CceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee
Q psy13076         92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF  171 (423)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  171 (423)
                                                        .+.+|...|.++.|+  +.++++++.|++|++||+.+++....  +
T Consensus       194 ----------------------------------~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~--~  235 (445)
T 2ovr_B          194 ----------------------------------TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHV--L  235 (445)
T ss_dssp             ----------------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEE--E
T ss_pred             ----------------------------------EECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEE--E
Confidence                                              234688889999985  57899999999999999976654322  1


Q ss_pred             cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC
Q psy13076        172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP  251 (423)
Q Consensus       172 ~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~  251 (423)
                      ..+..                                            .+.++.+  ++. .+++++.|+.|++|+...
T Consensus       236 ~~~~~--------------------------------------------~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~  268 (445)
T 2ovr_B          236 MGHVA--------------------------------------------AVRCVQY--DGR-RVVSGAYDFMVKVWDPET  268 (445)
T ss_dssp             ECCSS--------------------------------------------CEEEEEE--CSS-CEEEEETTSCEEEEEGGG
T ss_pred             cCCcc--------------------------------------------cEEEEEE--CCC-EEEEEcCCCEEEEEECCC
Confidence            12223                                            3444444  222 378899999999999887


Q ss_pred             ceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEE
Q psy13076        252 FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK  331 (423)
Q Consensus       252 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~  331 (423)
                      .+.......|...+.+++|  ++.++++|+.||.|++||.++++.+..+.  .|...+.++.+  ++++|++++.|+.|+
T Consensus       269 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~~~~dg~i~  342 (445)
T 2ovr_B          269 ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT--GHQSLTSGMEL--KDNILVSGNADSTVK  342 (445)
T ss_dssp             TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC--CCCSCEEEEEE--ETTEEEEEETTSCEE
T ss_pred             CcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc--CCcccEEEEEE--eCCEEEEEeCCCeEE
Confidence            7777788889999999999  78999999999999999999998877764  57888888877  467999999999999


Q ss_pred             EEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEe-----ccCCCceeEEEecCCCCe
Q psy13076        332 LWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI-----KGHNKPITALALSPDRGT  406 (423)
Q Consensus       332 iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~-----~~h~~~v~~i~~sp~~~~  406 (423)
                      +||+++++.+..+...........++.+++.++++++.||.|++||+.+++. +..+     .+|..+|++++|+|++.+
T Consensus       343 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~  421 (445)
T 2ovr_B          343 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF-IRNLVTLESGGSGGVVWRIRASNTKLV  421 (445)
T ss_dssp             EEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-EEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred             EEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce-eeeeeccccCCCCceEEEEEecCCEEE
Confidence            9999999888777532211222234455899999999999999999988653 4444     578999999999999999


Q ss_pred             EEEecCCCc----EEEeeCC
Q psy13076        407 VFTGSHDGF----ITRWNAK  422 (423)
Q Consensus       407 l~s~s~D~~----i~~W~~~  422 (423)
                      |++|+.||+    |.+||..
T Consensus       422 la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          422 CAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             EEEECSSSSSCCEEEEEECC
T ss_pred             EEEcccCCCCccEEEEEECC
Confidence            999999998    9999975

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-39  Score=305.88  Aligned_cols=319  Identities=17%  Similarity=0.242  Sum_probs=257.2

Q ss_pred             eeEEEEeCC-EEEEEeccceEEEEec----cCCCC-----ceeeccc----------ccCceeEEEEeCCCCeEEEecCC
Q psy13076          9 QVSCLWQGD-YLLTVSLSGFISYLDV----NNPST-----PIRVIKG----------HNKPITALALSPDRGTVFTGSHD   68 (423)
Q Consensus         9 ~~~~~~~~~-~~~~~~~dg~i~~~d~----~~~~~-----~~~~~~g----------h~~~V~~l~~~~~~~~l~sg~~D   68 (423)
                      ++++++||+ +||+++.||.|++||+    .++..     +...+..          |.++|.+++|+|++++|++|+.|
T Consensus        50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  129 (425)
T 1r5m_A           50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVEN  129 (425)
T ss_dssp             EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETT
T ss_pred             EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCC
Confidence            456667899 9999999999999999    76442     3334433          78899999999999999999999


Q ss_pred             CceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEE
Q psy13076         69 GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS  148 (423)
Q Consensus        69 ~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s  148 (423)
                      +.|++||. ++...                                          ..+.+|...|.+++|+|+++++++
T Consensus       130 g~i~i~~~-~~~~~------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~  166 (425)
T 1r5m_A          130 GELRLWNK-TGALL------------------------------------------NVLNFHRAPIVSVKWNKDGTHIIS  166 (425)
T ss_dssp             SCEEEEET-TSCEE------------------------------------------EEECCCCSCEEEEEECTTSSEEEE
T ss_pred             CeEEEEeC-CCCee------------------------------------------eeccCCCccEEEEEECCCCCEEEE
Confidence            99999993 32221                                          124568889999999999999999


Q ss_pred             EccCCcEEEEEcCCCceeEEeeecCCCCC---------------eeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee
Q psy13076        149 GDISGKVRIWDTVNKEHILKNEFHPIGGP---------------IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG  213 (423)
Q Consensus       149 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------------v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (423)
                      ++.|+.|++||+.+++.......  ....               +.+++|+|++. +++++.  +....+|+...+..+.
T Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~g~i~~~d~~~~~~~~  241 (425)
T 1r5m_A          167 MDVENVTILWNVISGTVMQHFEL--KETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGP--KGAIFVYQITEKTPTG  241 (425)
T ss_dssp             EETTCCEEEEETTTTEEEEEECC--C---------------CCCBSCCEEEETTE-EEEECG--GGCEEEEETTCSSCSE
T ss_pred             EecCCeEEEEECCCCcEEEEeec--cccCccceeeccccCCcceeeEEEEcCCCE-EEEEcC--CCeEEEEEcCCCceee
Confidence            99999999999988765543322  2233               88999999865 444433  3345778888888888


Q ss_pred             cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCC
Q psy13076        214 EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS  293 (423)
Q Consensus       214 ~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~  293 (423)
                      .+..|...+.+++|+|++.+ +++++.|+.|++|+....+.......|...+.+++|+|++ ++++++.||.|++||.++
T Consensus       242 ~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~  319 (425)
T 1r5m_A          242 KLIGHHGPISVLEFNDTNKL-LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ  319 (425)
T ss_dssp             EECCCSSCEEEEEEETTTTE-EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT
T ss_pred             eeccCCCceEEEEECCCCCE-EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC
Confidence            88889999999999999885 8899999999999988777666777888999999999999 999999999999999999


Q ss_pred             ccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcc--------------------eeeeeeeCcee-Ee
Q psy13076        294 ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS--------------------AVSEFLMGNQV-ED  352 (423)
Q Consensus       294 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~--------------------~i~~~~~~~~~-~~  352 (423)
                      ++.+..+.  .|...+.+++|+|++++|++++.|+.|++||+.+++                    .+..+...... ..
T Consensus       320 ~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  397 (425)
T 1r5m_A          320 NTLLALSI--VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI  397 (425)
T ss_dssp             TEEEEEEE--CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred             CcEeEecc--cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence            88777664  578899999999999999999999999999999887                    66666443222 45


Q ss_pred             eEEEEEecCcEEEEEeCCCcEEEEecC
Q psy13076        353 QQVSCLWQGDYLLTVSLSGFISYLDVN  379 (423)
Q Consensus       353 ~~~~~~~~g~~l~~~~~~~~i~~~~~~  379 (423)
                      ..+...+++.+|++++.+|.+++|++.
T Consensus       398 ~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          398 FDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEEEccCCCceEEEEecCceEEEEeec
Confidence            566677899999999999999999874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.5e-39  Score=300.00  Aligned_cols=292  Identities=15%  Similarity=0.206  Sum_probs=227.4

Q ss_pred             ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076         42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP  121 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (423)
                      .+..|.++|.+++|+|++++|++|+.|+.|++||.++++..                                       
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~---------------------------------------   43 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---------------------------------------   43 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---------------------------------------
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE---------------------------------------
Confidence            45569999999999999999999999999999998765310                                       


Q ss_pred             cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        122 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       122 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                       ....+.+|...|++++|+|+++++++++.|+.|++||+++.+.........+...|.+++|+|+++.            
T Consensus        44 -~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------  110 (372)
T 1k8k_C           44 -QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK------------  110 (372)
T ss_dssp             -EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE------------
T ss_pred             -eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCE------------
Confidence             1123457889999999999999999999999999999977654433333334455666666665543            


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce----eeeeccccccCeEEEEECCCCCEE
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHF  277 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l  277 (423)
                                                       +++++.|+.+++|+.....    .......|...|.+++|+|++++|
T Consensus       111 ---------------------------------l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  157 (372)
T 1k8k_C          111 ---------------------------------FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL  157 (372)
T ss_dssp             ---------------------------------EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred             ---------------------------------EEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence                                             5566777888888754332    223335678889999999999999


Q ss_pred             EEEEecCeEEEEECC------------------CccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076        278 ASAGFDGKVFLYDGA------------------SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       278 ~s~s~dg~i~vwd~~------------------~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      ++++.||.|++||..                  .++....+.  .|...+.+++|+|++++|++++.|+.|++||+++++
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  235 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM  235 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred             EEEcCCCCEEEEEcccccccccccccccccccchhhheEecC--CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            999999999999953                  455555553  588899999999999999999999999999999998


Q ss_pred             eeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCC--CC-------------------------------Cce-
Q psy13076        340 AVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN--PS-------------------------------TPI-  385 (423)
Q Consensus       340 ~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~--~~-------------------------------~~~-  385 (423)
                      .+..+... ......+...+++.+++++ .++.+++|++.+  +.                               ... 
T Consensus       236 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (372)
T 1k8k_C          236 AVATLASE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG  313 (372)
T ss_dssp             EEEEEECS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred             eeEEEccC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence            88777543 2234456667788888877 899999999977  21                               000 


Q ss_pred             -----EEe-ccCCCceeEEEec-CCC---CeEEEecCCCcEEEeeCC
Q psy13076        386 -----RVI-KGHNKPITALALS-PDR---GTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       386 -----~~~-~~h~~~v~~i~~s-p~~---~~l~s~s~D~~i~~W~~~  422 (423)
                           ..+ .+|..+|++++|+ +++   ++|+|||.||.|++|++.
T Consensus       314 ~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          314 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             CccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence                 222 4999999999977 565   899999999999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.3e-39  Score=302.37  Aligned_cols=289  Identities=15%  Similarity=0.125  Sum_probs=205.3

Q ss_pred             eeeEEEEeCCEEEEEeccc-------eEEEEeccCCCCce---------eecccccCceeEEEEeCCCCeEEEe------
Q psy13076          8 QQVSCLWQGDYLLTVSLSG-------FISYLDVNNPSTPI---------RVIKGHNKPITALALSPDRGTVFTG------   65 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg-------~i~~~d~~~~~~~~---------~~~~gh~~~V~~l~~~~~~~~l~sg------   65 (423)
                      |.+++++||++|++|+.|.       .|++|++..+....         ..|.+|.+.|.++++++  ..+++|      
T Consensus        18 ~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~~~~~g~~~~~~   95 (365)
T 4h5i_A           18 YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--GIILVGCNENST   95 (365)
T ss_dssp             EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--TEEEEECCCCHH
T ss_pred             EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--CEEEEEECCCcc
Confidence            6788888999999987643       59999987544321         24678999999988764  455554      


Q ss_pred             -----cCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEEC
Q psy13076         66 -----SHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS  140 (423)
Q Consensus        66 -----~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~s  140 (423)
                           +.|+++|+|++++.....                              .....   ........+...+.+++|+
T Consensus        96 ~l~s~~~d~~~r~~~~~~~~~~~------------------------------~~~~~---~~~~~~~~~~~~~~~v~fS  142 (365)
T 4h5i_A           96 KITQGKGNKHLRKFKYDKVNDQL------------------------------EFLTS---VDFDASTNADDYTKLVYIS  142 (365)
T ss_dssp             HHHHTSCCCCEEEEEEETTTTEE------------------------------EEEEE---ECSSCCCCTTCCEEEEEEC
T ss_pred             EEEEecCCCcEEEEEecCCCceE------------------------------EEeee---eceeecCCcccCEEEEEEc
Confidence                 456667777654321100                              00000   0001122344568899999


Q ss_pred             CCCCEEE--EEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCC
Q psy13076        141 PSGFYIA--SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ  218 (423)
Q Consensus       141 p~~~~l~--s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (423)
                      |||++++  +++.|++|+|||.++.+......   +..+|.+++|+|||++++++                         
T Consensus       143 pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~---~~~~V~~v~fspdg~~l~s~-------------------------  194 (365)
T 4h5i_A          143 REGTVAAIASSKVPAIMRIIDPSDLTEKFEIE---TRGEVKDLHFSTDGKVVAYI-------------------------  194 (365)
T ss_dssp             TTSSCEEEEESCSSCEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSSEEEEE-------------------------
T ss_pred             CCCCEEEEEECCCCCEEEEeECCCCcEEEEeC---CCCceEEEEEccCCceEEec-------------------------
Confidence            9999976  45579999999998877654332   34678889999988765543                         


Q ss_pred             CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce-eeeeccccccCeEEEEECCCCCEEEEEEecC----eEEEEECCC
Q psy13076        219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-FKMTKQEHSRFVQAVRYSPSGSHFASAGFDG----KVFLYDGAS  293 (423)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg----~i~vwd~~~  293 (423)
                                          +.++.+.+|...... .......|...+.+++|+|+|+++++++.|+    .++.|+...
T Consensus       195 --------------------s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~  254 (365)
T 4h5i_A          195 --------------------TGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS  254 (365)
T ss_dssp             --------------------CSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred             --------------------cceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence                                322222223222211 1233456777899999999999999999988    688898766


Q ss_pred             ccce--ecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCC
Q psy13076        294 ADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG  371 (423)
Q Consensus       294 ~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~  371 (423)
                      ....  .......|...|++++|+|+|++|++|+.|++|+|||+++++++.+                            
T Consensus       255 ~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~----------------------------  306 (365)
T 4h5i_A          255 GNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI----------------------------  306 (365)
T ss_dssp             TEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE----------------------------
T ss_pred             ceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE----------------------------
Confidence            5432  1122246888999999999999999999999999999988754322                            


Q ss_pred             cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        372 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       372 ~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                                     .+.+|..+|++++||||+++|||||.|++||+|++.
T Consensus       307 ---------------~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          307 ---------------FKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             ---------------ETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             ---------------ecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence                           246899999999999999999999999999999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-38  Score=299.44  Aligned_cols=277  Identities=25%  Similarity=0.352  Sum_probs=226.7

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccC------------------ceeEEEEeCCCCeEEEecCCCc
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK------------------PITALALSPDRGTVFTGSHDGF   70 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~------------------~V~~l~~~~~~~~l~sg~~D~~   70 (423)
                      ++++++||++||+++ ++.+++|++.+ .+.+..+.+|..                  .|.+++|+|++++|++|+.|++
T Consensus        69 ~v~fspdg~~la~g~-~~~v~i~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~  146 (393)
T 1erj_A           69 CVKFSNDGEYLATGC-NKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL  146 (393)
T ss_dssp             EEEECTTSSEEEEEC-BSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEECCCCCEEEEEc-CCcEEEEEecC-CCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence            566677999999876 78999999976 345556665532                  4999999999999999999999


Q ss_pred             eEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc
Q psy13076         71 ITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD  150 (423)
Q Consensus        71 i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~  150 (423)
                      |++||+++++...                                          .+.+|...|.+++|+|++++|++++
T Consensus       147 i~iwd~~~~~~~~------------------------------------------~~~~h~~~v~~~~~~p~~~~l~s~s  184 (393)
T 1erj_A          147 IRIWDIENRKIVM------------------------------------------ILQGHEQDIYSLDYFPSGDKLVSGS  184 (393)
T ss_dssp             EEEEETTTTEEEE------------------------------------------EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCcEEE------------------------------------------EEccCCCCEEEEEEcCCCCEEEEec
Confidence            9999998754322                                          3457999999999999999999999


Q ss_pred             cCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC-CCCeEEEEEcCCceeeEEEeecCCcceecc-------cCCCcce
Q psy13076        151 ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEI-------SGQSKPI  222 (423)
Q Consensus       151 ~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i  222 (423)
                      .|++|++||+++++......   ....+.+++|+| +++++++++.+.  ..++|+..++..+..+       .+|...|
T Consensus       185 ~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~s~d~--~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v  259 (393)
T 1erj_A          185 GDRTVRIWDLRTGQCSLTLS---IEDGVTTVAVSPGDGKYIAAGSLDR--AVRVWDSETGFLVERLDSENESGTGHKDSV  259 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSTTCCEEEEEETTS--CEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred             CCCcEEEEECCCCeeEEEEE---cCCCcEEEEEECCCCCEEEEEcCCC--cEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence            99999999998876554332   346789999999 788887776543  3578887777665554       5688899


Q ss_pred             eEEEEecCCCeeEEEEeCCCeEEEEcCCCc------------eeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEE
Q psy13076        223 NSCDFKPSRPFRIITGSEDNTIAVFEGPPF------------KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD  290 (423)
Q Consensus       223 ~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~------------~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd  290 (423)
                      .+++|+|++.+ +++++.|+.|++|+....            .....+..|...|.+++|+|++++|++|+.|+.|++||
T Consensus       260 ~~v~~~~~g~~-l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd  338 (393)
T 1erj_A          260 YSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD  338 (393)
T ss_dssp             EEEEECTTSSE-EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred             EEEEECCCCCE-EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            99999999876 899999999999997532            23345667889999999999999999999999999999


Q ss_pred             CCCccceecccccccCCCeEEEEECC------CCCeEEEEeCCCcEEEEecCC
Q psy13076        291 GASADLVSELGNPAHKGGVYAVAWKP------DGTQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~l~~~~------~~~~l~s~s~d~~i~iwd~~~  337 (423)
                      .++++.+..+  .+|...|.+++|+|      ++++|++|+.|++|++|+++.
T Consensus       339 ~~~~~~~~~l--~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          339 KKSGNPLLML--QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             TTTCCEEEEE--ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCCCeEEEEE--CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            9999887766  46999999999986      688999999999999999764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1e-38  Score=299.69  Aligned_cols=321  Identities=17%  Similarity=0.168  Sum_probs=239.6

Q ss_pred             ceeeEEEEeCCEEEEEeccceEEEEeccCCC-----CceeecccccCceeEEEEeCC----C---CeEEEecCCCceEEe
Q psy13076          7 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPS-----TPIRVIKGHNKPITALALSPD----R---GTVFTGSHDGFITRW   74 (423)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-----~~~~~~~gh~~~V~~l~~~~~----~---~~l~sg~~D~~i~vW   74 (423)
                      +.+.++.|..++|++++.||.|++||+....     .+...+.+|..+|.+++|+|+    +   ++|++++.|+.|++|
T Consensus        17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw   96 (397)
T 1sq9_A           17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY   96 (397)
T ss_dssp             SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred             cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEE
Confidence            4455666777999999999999999998644     257788999999999999999    9   999999999999999


Q ss_pred             ecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCC-----cceEEEEEEC----CCCCE
Q psy13076         75 NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEH-----SCAVNVAKYS----PSGFY  145 (423)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h-----~~~i~~~~~s----p~~~~  145 (423)
                      |++++....                                     ......+.+|     ...|.+++|+    |++++
T Consensus        97 ~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  139 (397)
T 1sq9_A           97 RITREDETK-------------------------------------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH  139 (397)
T ss_dssp             EEEECTTTC-------------------------------------CEEEEEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred             EccCCcccc-------------------------------------cccceeecccccccCCCcEEEEEEeeccCCCCce
Confidence            987643200                                     0001123445     5889999999    99999


Q ss_pred             -EEEEccCCcEEEEEcCC------CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCC
Q psy13076        146 -IASGDISGKVRIWDTVN------KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ  218 (423)
Q Consensus       146 -l~s~~~d~~i~vwd~~~------~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (423)
                       +++++.|+.|++||+.+      .+...               |.|.+.....                   ......+
T Consensus       140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~~~~~~~~-------------------~~~~~~~  185 (397)
T 1sq9_A          140 RLVATDVKGTTYIWKFHPFADESNSLTLN---------------WSPTLELQGT-------------------VESPMTP  185 (397)
T ss_dssp             EEEEEETTSCEEEEEEESSSSHHHHTTTC---------------CCCEEEEEEE-------------------ECCSSSS
T ss_pred             EEEEEeCCCcEEEEeCCccccccccceee---------------ccCcceeeee-------------------eccccCC
Confidence             99999999999999876      22111               1111100000                   0011235


Q ss_pred             CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc---c---ccCeEEEEECCCCCEEEEEEec---CeEEEE
Q psy13076        219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE---H---SRFVQAVRYSPSGSHFASAGFD---GKVFLY  289 (423)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~---~---~~~i~~l~~s~~g~~l~s~s~d---g~i~vw  289 (423)
                      ...+.+++|+|++  .+++++.|+.|++|+....+....+..   |   ...|.+++|+|++++|++++.|   |.|++|
T Consensus       186 ~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~  263 (397)
T 1sq9_A          186 SQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY  263 (397)
T ss_dssp             CCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence            5678888888887  588899999999999988777777777   8   8899999999999999999999   999999


Q ss_pred             ECCCccceecccccc-----------cCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEE
Q psy13076        290 DGASADLVSELGNPA-----------HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL  358 (423)
Q Consensus       290 d~~~~~~~~~~~~~~-----------~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~  358 (423)
                      |.++++.+..+....           |...|.+++|+|++++|++++.|+.|++||+.+++.+..+........      
T Consensus       264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------  337 (397)
T 1sq9_A          264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE------  337 (397)
T ss_dssp             ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS------
T ss_pred             ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCccc------
Confidence            999988777664211           889999999999999999999999999999998877665531100000      


Q ss_pred             ecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC----------CeEEEecCCCcEEEeeCCC
Q psy13076        359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR----------GTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       359 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~----------~~l~s~s~D~~i~~W~~~~  423 (423)
                       ..       .       +...  ...+....|..+|++++|+|++          ++|++++.||.|++|++++
T Consensus       338 -~~-------~-------~~~~--g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          338 -IE-------E-------DILA--VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             -SG-------G-------GCCC--BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             -ch-------h-------hhhc--cccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence             00       0       0000  0112235579999999999998          7999999999999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-40  Score=311.96  Aligned_cols=351  Identities=12%  Similarity=0.086  Sum_probs=251.8

Q ss_pred             EEEeCCEEEEEeccceEEEEeccCCCCceeec-ccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076         12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI-KGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      +.+++..+++++      .|+..  .+++..+ ++|.++|++++|+| ++++|+||+.||+|++||+++.......    
T Consensus        35 f~~~~~~~~~~~------~w~~~--g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~----  102 (437)
T 3gre_A           35 FGPIQEIVRSPN------MGNLR--GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY----  102 (437)
T ss_dssp             GCCCCCCCCCCC------GGGCC--CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC----
T ss_pred             cCCccccccccc------ccccc--ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc----
Confidence            455777777665      37643  5677788 89999999999999 9999999999999999998752100000    


Q ss_pred             CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcC---CCcee
Q psy13076         90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV---NKEHI  166 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~---~~~~~  166 (423)
                                                      ..... .+|...|.+++|+|++++|++++.|++|++||++   +++..
T Consensus       103 --------------------------------~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  149 (437)
T 3gre_A          103 --------------------------------SSSLT-YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV  149 (437)
T ss_dssp             --------------------------------SCSEE-EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE
T ss_pred             --------------------------------ceeee-ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee
Confidence                                            00001 1488899999999999999999999999999984   33222


Q ss_pred             E--------EeeecC--CCCCeeEEE--ECCCCCeEEEEEcCCceeeEEEeecCCcceecccC--CCcceeEEEEecCCC
Q psy13076        167 L--------KNEFHP--IGGPIKDIA--WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG--QSKPINSCDFKPSRP  232 (423)
Q Consensus       167 ~--------~~~~~~--~~~~v~~v~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~  232 (423)
                      .        ...+..  ....+.++.  ++|++..+++++.+  ....+|+...+..+..+..  |...|.+++|+|++.
T Consensus       150 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~  227 (437)
T 3gre_A          150 KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL--SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC  227 (437)
T ss_dssp             EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT--SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC
T ss_pred             eccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC
Confidence            1        112222  345666666  66888888877654  3467888888888888877  788999999999977


Q ss_pred             eeEEEEeCCCeEEEEcCCCceeeeecc-ccccCeEEEEEC----CCCCEEEEEEecCeEEEEECCCccceeccccc----
Q psy13076        233 FRIITGSEDNTIAVFEGPPFKFKMTKQ-EHSRFVQAVRYS----PSGSHFASAGFDGKVFLYDGASADLVSELGNP----  303 (423)
Q Consensus       233 ~~~~s~s~d~~i~~~~~~~~~~~~~~~-~~~~~i~~l~~s----~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----  303 (423)
                      + +++++.|+.|++||.+..+...... .|...|.+++|+    |++.+|++|+.||.|++||.++++....+...    
T Consensus       228 ~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  306 (437)
T 3gre_A          228 V-LILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQP  306 (437)
T ss_dssp             E-EEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCC
T ss_pred             E-EEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCC
Confidence            5 8999999999999988777666554 677789999555    56889999999999999999988765544311    


Q ss_pred             --------------------ccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCce--eEeeEEEEEecC
Q psy13076        304 --------------------AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ--VEDQQVSCLWQG  361 (423)
Q Consensus       304 --------------------~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~--~~~~~~~~~~~g  361 (423)
                                          .|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+.....  ..........+.
T Consensus       307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (437)
T 3gre_A          307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANL  385 (437)
T ss_dssp             CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTE
T ss_pred             ccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecce
Confidence                                267779999999 789999999999999999999988776643211  111111111122


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCC--CCeEEEecCCCcEEEee
Q psy13076        362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD--RGTVFTGSHDGFITRWN  420 (423)
Q Consensus       362 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~--~~~l~s~s~D~~i~~W~  420 (423)
                      .+++..        ++... .........|...|++++|+++  +.+|+||+.||+|++|+
T Consensus       386 ~~~~~~--------~~~~~-~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          386 TMLLRK--------MKRTS-THSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEE--------CC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEEEEe--------ccccc-ccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            222211        11111 2223445679999999999998  77999999999999995

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=300.12  Aligned_cols=325  Identities=19%  Similarity=0.253  Sum_probs=246.5

Q ss_pred             eccceEEEEeccCCCCceeecccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCC
Q psy13076         23 SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPK  101 (423)
Q Consensus        23 ~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (423)
                      +.++.+++|+++. .+....+++|.++|++++|+| ++++|++|+.||+|++||++++.....+...             
T Consensus        20 ~~~~~~~v~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------------   85 (408)
T 4a11_B           20 RAESTRRVLGLEL-NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK-------------   85 (408)
T ss_dssp             HHHHHHHHHTEEE-CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC-------------
T ss_pred             eccCcceeecccc-CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc-------------
Confidence            3456778888865 456778999999999999999 9999999999999999999875432221100             


Q ss_pred             CCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeE
Q psy13076        102 GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD  180 (423)
Q Consensus       102 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~  180 (423)
                                ..  .    ........+|...|.+++|+| ++.++++++.|+.|++||+.+.+......   ....+.+
T Consensus        86 ----------~~--~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~  146 (408)
T 4a11_B           86 ----------AV--C----SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---FEETVYS  146 (408)
T ss_dssp             ----------EE--E----EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEE
T ss_pred             ----------cc--c----cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---CCCceee
Confidence                      00  0    000112356999999999999 78899999999999999998776543322   2345566


Q ss_pred             EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc
Q psy13076        181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE  260 (423)
Q Consensus       181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~  260 (423)
                      +.|+|.+.                                         ++ ..+++++.++.+++|+.........+..
T Consensus       147 ~~~~~~~~-----------------------------------------~~-~~~~~~~~~~~v~~~d~~~~~~~~~~~~  184 (408)
T 4a11_B          147 HHMSPVST-----------------------------------------KH-CLVAVGTRGPKVQLCDLKSGSCSHILQG  184 (408)
T ss_dssp             EEECSSCS-----------------------------------------SC-CEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred             eEeecCCC-----------------------------------------CC-cEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence            66665421                                         11 1477889999999999887777777788


Q ss_pred             cccCeEEEEECCCCC-EEEEEEecCeEEEEECCCcc-ceecc-------------cccccCCCeEEEEECCCCCeEEEEe
Q psy13076        261 HSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASAD-LVSEL-------------GNPAHKGGVYAVAWKPDGTQLLTAS  325 (423)
Q Consensus       261 ~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~-~~~~~-------------~~~~~~~~i~~l~~~~~~~~l~s~s  325 (423)
                      |...|.+++|+|+++ ++++|+.||.|++||.+++. ....+             ....|...|.+++|+|++++|++++
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence            999999999999999 58999999999999997665 22211             1135888999999999999999999


Q ss_pred             CCCcEEEEecCCcceeeeeeeCc---eeEeeEEEE-EecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEec
Q psy13076        326 GDKTCKLWDIETKSAVSEFLMGN---QVEDQQVSC-LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALS  401 (423)
Q Consensus       326 ~d~~i~iwd~~~~~~i~~~~~~~---~~~~~~~~~-~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~s  401 (423)
                      .|+.|++||+.+++....+....   ......+.. ...+..+++++.++.+++||+.+. .++..+.+|..+|++++|+
T Consensus       265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s  343 (408)
T 4a11_B          265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKTVDCCVFQ  343 (408)
T ss_dssp             TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSCEEEEEEE
T ss_pred             CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCCeEEEEEEc
Confidence            99999999999877544332111   001111111 124566777788999999999885 4567889999999999999


Q ss_pred             CCCCeEEEecCCCcEEEeeCCC
Q psy13076        402 PDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       402 p~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      |++++|++++.||.|++||+++
T Consensus       344 ~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          344 SNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             TTTTEEEEEETTSCEEEEEECC
T ss_pred             CCCCEEEEECCCCeEEEEeCCC
Confidence            9999999999999999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-37  Score=282.17  Aligned_cols=278  Identities=21%  Similarity=0.353  Sum_probs=231.6

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      .+++++||++|++++.||.|++||+.+ .+....+.+|..+|.+++|+|++++|++|+.|+.|++||+++++++.     
T Consensus        28 ~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-----  101 (312)
T 4ery_A           28 SVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-----  101 (312)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----
T ss_pred             EEEECCCCCEEEEeeCCCeEEEEeCCC-cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE-----
Confidence            456667999999999999999999875 45677899999999999999999999999999999999998754322     


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                                                           .+.+|...|.++.|+|+++++++++.|++|++||+++.+... 
T Consensus       102 -------------------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-  143 (312)
T 4ery_A          102 -------------------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK-  143 (312)
T ss_dssp             -------------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred             -------------------------------------EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE-
Confidence                                                 245688899999999999999999999999999998876543 


Q ss_pred             eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc-CCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076        169 NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVF  247 (423)
Q Consensus       169 ~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~  247 (423)
                       .+..+..+|.+++|+|+++.+++++.+.  ...+|+...+..+..+. .+..++..++|+|++.+ +++++.|+.|++|
T Consensus       144 -~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~iw  219 (312)
T 4ery_A          144 -TLPAHSDPVSAVHFNRDGSLIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLW  219 (312)
T ss_dssp             -EECCCSSCEEEEEECTTSSEEEEEETTS--CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE-EEEEETTTEEEEE
T ss_pred             -EecCCCCcEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeEEeccCCCceEEEEECCCCCE-EEEEcCCCeEEEE
Confidence             3445567899999999999888876543  45678877777665543 45667899999999886 8889999999999


Q ss_pred             cCCCceeeeeccccccCe---EEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEE
Q psy13076        248 EGPPFKFKMTKQEHSRFV---QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA  324 (423)
Q Consensus       248 ~~~~~~~~~~~~~~~~~i---~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~  324 (423)
                      |....+....+..|....   ......+++.++++|+.||.|++||..+++.+..+.  +|...|.+++|+|++++|+++
T Consensus       220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~  297 (312)
T 4ery_A          220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ--GHTDVVISTACHPTENIIASA  297 (312)
T ss_dssp             ETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECSSSSEEEEE
T ss_pred             ECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh--ccCCcEEEEeecCcCCceEEE
Confidence            998877766666665432   233344678899999999999999999998887774  688999999999999999999


Q ss_pred             e--CCCcEEEEecC
Q psy13076        325 S--GDKTCKLWDIE  336 (423)
Q Consensus       325 s--~d~~i~iwd~~  336 (423)
                      +  .|++|++|+..
T Consensus       298 ~~~~d~~i~~W~~d  311 (312)
T 4ery_A          298 ALENDKTIKLWKSD  311 (312)
T ss_dssp             ECTTTCCEEEEECC
T ss_pred             EccCCccEEEecCC
Confidence            7  69999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-39  Score=301.07  Aligned_cols=290  Identities=14%  Similarity=0.159  Sum_probs=210.9

Q ss_pred             ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076         42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP  121 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (423)
                      .++.|.++|++++|+|++++|++|+.|++|++||+.++..                                        
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------------------------   45 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------------------------   45 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE----------------------------------------
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce----------------------------------------
Confidence            4556788999999999999999999999999999876410                                        


Q ss_pred             cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc-eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        122 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       122 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                      +....+.+|...|.+++|+|++++|++++.|++|++||+.+.+ ......+.                            
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~----------------------------   97 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL----------------------------   97 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECC----------------------------
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec----------------------------
Confidence            1123456899999999999999999999999999999987654 11111122                            


Q ss_pred             eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce---eeeeccc-cccCeEEEEECCCCCE
Q psy13076        201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK---FKMTKQE-HSRFVQAVRYSPSGSH  276 (423)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~---~~~~~~~-~~~~i~~l~~s~~g~~  276 (423)
                                      .|...|.+++|+|++.. +++++.|+.|++|+.....   ....+.. |...|.+++|+|++++
T Consensus        98 ----------------~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  160 (377)
T 3dwl_C           98 ----------------RLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL  160 (377)
T ss_dssp             ----------------CCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred             ----------------ccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence                            23334555555554443 6778889999999876544   2444555 8899999999999999


Q ss_pred             EEEEEecCeEEEEECCC------------------ccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        277 FASAGFDGKVFLYDGAS------------------ADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       277 l~s~s~dg~i~vwd~~~------------------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      |++++.|+.|++||+..                  ++....+   .|...|.+++|+|++++|++++.|++|++||+.++
T Consensus       161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            99999999999999853                  3333333   68899999999999999999999999999999998


Q ss_pred             ce----eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC--------------------------------
Q psy13076        339 SA----VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS--------------------------------  382 (423)
Q Consensus       339 ~~----i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~--------------------------------  382 (423)
                      +.    +..+.. +......+.+.++|.+|++++.++.+ +|+.....                                
T Consensus       238 ~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (377)
T 3dwl_C          238 EQPPRALITVKL-SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPV  315 (377)
T ss_dssp             TSCEEECCCEEC-SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----
T ss_pred             CCcceeeEeecC-CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccc
Confidence            76    444432 22334566777899999888766666 55543111                                


Q ss_pred             ------CceE-------------EeccCCCceeEEEecCCCC----eEEEecCCCcEEEeeC
Q psy13076        383 ------TPIR-------------VIKGHNKPITALALSPDRG----TVFTGSHDGFITRWNA  421 (423)
Q Consensus       383 ------~~~~-------------~~~~h~~~v~~i~~sp~~~----~l~s~s~D~~i~~W~~  421 (423)
                            ....             ....|...|+++++.+...    .|+|+|.||.|++||+
T Consensus       316 ~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          316 SFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ---------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                  0000             0123999999999876554    5999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.1e-38  Score=291.85  Aligned_cols=318  Identities=18%  Similarity=0.234  Sum_probs=234.9

Q ss_pred             ceeecccccCceeEEEEeCCCCe-EEEecC---CCceEEeecCCcceeecccCCCCCCceEEeeCCC---CCeEEEe-cC
Q psy13076         39 PIRVIKGHNKPITALALSPDRGT-VFTGSH---DGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPK---GKNFLYT-NG  110 (423)
Q Consensus        39 ~~~~~~gh~~~V~~l~~~~~~~~-l~sg~~---D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~  110 (423)
                      ....+++|.++|.+++|+|+++. +++|+.   |++|++||+++++........+......+.++|+   +..++.. .+
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            34567899999999999999864 556766   9999999999887654433334556667888887   5666654 47


Q ss_pred             CeEEEEecCCCc-ccccccCCcceEEEEE------ECCCCCEEEEEccCCcEEEEEcCCCc-eeEEeeecC--CCCCeeE
Q psy13076        111 NSVIIRNIENPA-ISDIYTEHSCAVNVAK------YSPSGFYIASGDISGKVRIWDTVNKE-HILKNEFHP--IGGPIKD  180 (423)
Q Consensus       111 ~~~~i~~~~~~~-~~~~~~~h~~~i~~~~------~sp~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~--~~~~v~~  180 (423)
                      ..+.+|+++++. ....+.+|...|.+++      |+|+++++++++.|+.|++||+.+.+ .......+.  ....+.+
T Consensus        90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred             CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence            789999999887 8888999999999995      57899999999999999999998754 222111110  0112333


Q ss_pred             EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc
Q psy13076        181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE  260 (423)
Q Consensus       181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~  260 (423)
                      ++|+                                        ++|+|++.+ +++++.|+.|++|+....+.. ....
T Consensus       170 ~~~~----------------------------------------~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~-~~~~  207 (357)
T 3i2n_A          170 VAFG----------------------------------------NAYNQEERV-VCAGYDNGDIKLFDLRNMALR-WETN  207 (357)
T ss_dssp             EEEE----------------------------------------CCCC-CCCE-EEEEETTSEEEEEETTTTEEE-EEEE
T ss_pred             EEEE----------------------------------------eccCCCCCE-EEEEccCCeEEEEECccCcee-eecC
Confidence            3321                                        114555554 788899999999998876653 3356


Q ss_pred             cccCeEEEEECC---CCCEEEEEEecCeEEEEECCCccceeccc---ccccCCCeEEEEECCCCC-eEEEEeCCCcEEEE
Q psy13076        261 HSRFVQAVRYSP---SGSHFASAGFDGKVFLYDGASADLVSELG---NPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLW  333 (423)
Q Consensus       261 ~~~~i~~l~~s~---~g~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~i~~l~~~~~~~-~l~s~s~d~~i~iw  333 (423)
                      |...+.+++|+|   ++.++++++.||.|++||.++++....+.   ...|...|.+++|+|+++ +|++++.|+.|++|
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW  287 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence            778899999999   99999999999999999998876554432   126889999999999998 89999999999999


Q ss_pred             ecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEE-EecC
Q psy13076        334 DIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TGSH  412 (423)
Q Consensus       334 d~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~-s~s~  412 (423)
                      |++...........             |...   ...+.         ...+..+.+|..+|++++|+|++++|+ |++.
T Consensus       288 d~~~~~~~~~~~~~-------------g~~~---~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~  342 (357)
T 3i2n_A          288 KYEYPIQRSKKDSE-------------GIEM---GVAGS---------VSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF  342 (357)
T ss_dssp             EEECCSCC--CCTT-------------SCCC---CCCCE---------EEEEEEEECCSSCEEEEEECSSSTTEEEEEET
T ss_pred             ecCCCcccccccCC-------------CCcc---ccccc---------cceeeccccCCCCeeEEEEcCCCCeEEEEecC
Confidence            99876543221110             0000   00000         123456789999999999999999998 8999


Q ss_pred             CCcEEEeeCCC
Q psy13076        413 DGFITRWNAKT  423 (423)
Q Consensus       413 D~~i~~W~~~~  423 (423)
                      |+.|++||+.+
T Consensus       343 d~~i~iw~~~~  353 (357)
T 3i2n_A          343 DQTVRVLIVTK  353 (357)
T ss_dssp             TSEEEEEEECC
T ss_pred             CCcEEEEECCC
Confidence            99999999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.7e-38  Score=291.48  Aligned_cols=296  Identities=16%  Similarity=0.240  Sum_probs=226.6

Q ss_pred             ecccccCceeEEEEeCC----CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         42 VIKGHNKPITALALSPD----RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~~----~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      ..++|.++|++++|+|+    ...+++++.++.|++||..++..+..+...                             
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~-----------------------------   63 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY-----------------------------   63 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE-----------------------------
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec-----------------------------
Confidence            44589999999999984    556777777889999999876543322110                             


Q ss_pred             cCCCcccccccCCcceEEEEEECCC----CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEE
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSPS----GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV  193 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp~----~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~  193 (423)
                              ....|...|.+++|+|+    +.++++++.|+.|++||+.+.+....  +..+..+|.+++|+|+       
T Consensus        64 --------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~-------  126 (366)
T 3k26_A           64 --------VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH--YVGHGNAINELKFHPR-------  126 (366)
T ss_dssp             --------ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE--EESCCSCEEEEEECSS-------
T ss_pred             --------cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee--ecCCCCcEEEEEECCC-------
Confidence                    01236778999999998    67999999999999999987654322  2233445555555551       


Q ss_pred             EcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec---cccccCeEEEEE
Q psy13076        194 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK---QEHSRFVQAVRY  270 (423)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~---~~~~~~i~~l~~  270 (423)
                                                          ++. .+++++.|+.|++|+....+.....   ..|...|.+++|
T Consensus       127 ------------------------------------~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A          127 ------------------------------------DPN-LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             ------------------------------------CTT-EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred             ------------------------------------CCC-EEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence                                                222 3778889999999998877766665   678999999999


Q ss_pred             CCCCCEEEEEEecCeEEEEECCCccceecccc--------------------------cccCCCeEEEEECCCCCeEEEE
Q psy13076        271 SPSGSHFASAGFDGKVFLYDGASADLVSELGN--------------------------PAHKGGVYAVAWKPDGTQLLTA  324 (423)
Q Consensus       271 s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~--------------------------~~~~~~i~~l~~~~~~~~l~s~  324 (423)
                      +|++++|++++.||.|++||.++++....+..                          ..|...|.+++|+  +++|+++
T Consensus       170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~  247 (366)
T 3k26_A          170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK  247 (366)
T ss_dssp             CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred             CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence            99999999999999999999988765433321                          1288899999998  7799999


Q ss_pred             eCCCcEEEEecCCcce--------------eeeeeeCceeEeeEEEEEec--CcEEEEEeCCCcEEEEecCCCCC---ce
Q psy13076        325 SGDKTCKLWDIETKSA--------------VSEFLMGNQVEDQQVSCLWQ--GDYLLTVSLSGFISYLDVNNPST---PI  385 (423)
Q Consensus       325 s~d~~i~iwd~~~~~~--------------i~~~~~~~~~~~~~~~~~~~--g~~l~~~~~~~~i~~~~~~~~~~---~~  385 (423)
                      +.|+.|++||+.+...              +..+.. +......+.+.++  |.+|++++.+|.|++||+.+...   ..
T Consensus       248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  326 (366)
T 3k26_A          248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY-SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC  326 (366)
T ss_dssp             CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC-SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE
T ss_pred             ecCCEEEEEeCCCccccccccccCCcchheeccccc-cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccc
Confidence            9999999999987654              222221 1122333455667  99999999999999999987542   34


Q ss_pred             EEeccC--CCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        386 RVIKGH--NKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       386 ~~~~~h--~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      ..+.+|  ..+|++++|+|++++|++++.||.|++||+.+
T Consensus       327 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          327 TTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             eEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            467777  79999999999999999999999999999875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.5e-39  Score=292.36  Aligned_cols=256  Identities=20%  Similarity=0.274  Sum_probs=192.8

Q ss_pred             ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076         42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP  121 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (423)
                      ++.+|.++|++++|+|++++|+||+.|++|++||++++...                                       
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~---------------------------------------   48 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI---------------------------------------   48 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---------------------------------------
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---------------------------------------
Confidence            57899999999999999999999999999999998754210                                       


Q ss_pred             cccccccCCcceEEEEEECC--CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        122 AISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       122 ~~~~~~~~h~~~i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                       ....+.+|...|++++|+|  ++++|+|++.|++|++||+++++......+..+..+|.+++|+|++.           
T Consensus        49 -~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-----------  116 (316)
T 3bg1_A           49 -LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDY-----------  116 (316)
T ss_dssp             -EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTT-----------
T ss_pred             -EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCC-----------
Confidence             1123568999999999986  48999999999999999987653222223333445555555555421           


Q ss_pred             eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc---eeeeeccccccCeEEEEECCC---
Q psy13076        200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPS---  273 (423)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~i~~l~~s~~---  273 (423)
                                                     + ..+++++.|++|++|+....   ........|...+.+++|+|+   
T Consensus       117 -------------------------------g-~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A          117 -------------------------------G-LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             -------------------------------C-SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             -------------------------------C-cEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence                                           1 23788899999999986543   223455678888999999997   


Q ss_pred             --------------CCEEEEEEecCeEEEEECCCcc---ceecccccccCCCeEEEEECCCC----CeEEEEeCCCcEEE
Q psy13076        274 --------------GSHFASAGFDGKVFLYDGASAD---LVSELGNPAHKGGVYAVAWKPDG----TQLLTASGDKTCKL  332 (423)
Q Consensus       274 --------------g~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~i~~l~~~~~~----~~l~s~s~d~~i~i  332 (423)
                                    +++|++|+.|+.|++||.+...   ....+  .+|...|.+++|+|++    ++|++++.|++|++
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l--~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL--EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC--BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec--ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence                          4789999999999999987542   33444  4699999999999986    88999999999999


Q ss_pred             EecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecC
Q psy13076        333 WDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH  412 (423)
Q Consensus       333 wd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~  412 (423)
                      ||+.+...-                                        ......+.+|..+|++++|+|++++|++++.
T Consensus       243 w~~~~~~~~----------------------------------------~~~~~~~~~~~~~v~~v~~sp~g~~las~~~  282 (316)
T 3bg1_A          243 WTCDDASSN----------------------------------------TWSPKLLHKFNDVVWHVSWSITANILAVSGG  282 (316)
T ss_dssp             EECSSTTCC----------------------------------------CCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred             EEccCcccc----------------------------------------chhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence            998763210                                        0001123568899999999999999999999


Q ss_pred             CCcEEEeeCC
Q psy13076        413 DGFITRWNAK  422 (423)
Q Consensus       413 D~~i~~W~~~  422 (423)
                      |++|++|+..
T Consensus       283 D~~v~lw~~~  292 (316)
T 3bg1_A          283 DNKVTLWKES  292 (316)
T ss_dssp             SSCEEEEEEC
T ss_pred             CCeEEEEEEC
Confidence            9999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-37  Score=281.01  Aligned_cols=292  Identities=17%  Similarity=0.257  Sum_probs=235.4

Q ss_pred             eccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCC
Q psy13076         32 DVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGN  111 (423)
Q Consensus        32 d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (423)
                      |..++.++..++++|.++|++++| |++++|++|+.||.|++||++++....                            
T Consensus         3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~----------------------------   53 (313)
T 3odt_A            3 DPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT----------------------------   53 (313)
T ss_dssp             --CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE----------------------------
T ss_pred             CccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE----------------------------
Confidence            444556778899999999999999 999999999999999999987654322                            


Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce-eEEeeecCCCCCeeEEEECCCCCeE
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRM  190 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~~  190 (423)
                                    .+..|...|.+++|+|+++++++++.|+.|++|++..... .....+..+..+|.+++|  ++..+
T Consensus        54 --------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l  117 (313)
T 3odt_A           54 --------------VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVV  117 (313)
T ss_dssp             --------------EEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEE
T ss_pred             --------------EeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEE
Confidence                          2345778899999999999999999999999999876431 112334556788999999  56677


Q ss_pred             EEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc-cccCeEEEE
Q psy13076        191 VVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-HSRFVQAVR  269 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~-~~~~i~~l~  269 (423)
                      ++++.+.  ...+|+  .+.....+..+..++.++.+.|.....+++++.|+.+++|+..  +....... +...+.+++
T Consensus       118 ~~~~~d~--~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~  191 (313)
T 3odt_A          118 ISGSWDK--TAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLA  191 (313)
T ss_dssp             EEEETTS--EEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEE
T ss_pred             EEEeCCC--CEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEE
Confidence            7766543  344554  6677777888999999999999444468999999999999943  33334444 888999999


Q ss_pred             ECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCce
Q psy13076        270 YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ  349 (423)
Q Consensus       270 ~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~  349 (423)
                      |+|++. +++++.||.|++||.++++.+..+.  .|...|.+++|+|++ .|++++.|+.|++||+.+++.+        
T Consensus       192 ~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~--------  259 (313)
T 3odt_A          192 VVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE--GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLK--------  259 (313)
T ss_dssp             EEETTE-EEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEE--------
T ss_pred             EcCCCe-EEEccCCCeEEEEECCchhhhhhhh--cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCcee--------
Confidence            999998 9999999999999999998877764  588999999999999 6899999999999999876532        


Q ss_pred             eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        350 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       350 ~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                                                          ..+..|..+|++++|+|+++ +++++.||.|++||+++
T Consensus       260 ------------------------------------~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          260 ------------------------------------QVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             ------------------------------------EEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred             ------------------------------------EEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence                                                23456778899999999998 66799999999999763

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.3e-37  Score=284.15  Aligned_cols=285  Identities=19%  Similarity=0.326  Sum_probs=227.6

Q ss_pred             eeEEEEe-CCEEEEEeccceEEEEeccCCCC----ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076          9 QVSCLWQ-GDYLLTVSLSGFISYLDVNNPST----PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus         9 ~~~~~~~-~~~~~~~~~dg~i~~~d~~~~~~----~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      +|+++|+ +++||+||.||.|++||+.....    +..++++|.++|.+++|+|++++|++|+.|+.|++|+........
T Consensus        43 ~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~  122 (340)
T 4aow_A           43 QIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR  122 (340)
T ss_dssp             EEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceee
Confidence            3455555 78999999999999999875332    456789999999999999999999999999999999987654322


Q ss_pred             cccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC
Q psy13076         84 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~  163 (423)
                      .                                          ...+...+....++|++.++++++.|+.+++||....
T Consensus       123 ~------------------------------------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~  160 (340)
T 4aow_A          123 R------------------------------------------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV  160 (340)
T ss_dssp             E------------------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred             e------------------------------------------ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC
Confidence            1                                          1234456777889999999999999999999998654


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT  243 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~  243 (423)
                      ... ......+...+..++|++++...+.++.+.+....+|+...+..+..+.+|..+|.+++|+|++.+ +++++.|+.
T Consensus       161 ~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~Dg~  238 (340)
T 4aow_A          161 CKY-TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL-CASGGKDGQ  238 (340)
T ss_dssp             EEE-EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTCE
T ss_pred             ceE-EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCE-EEEEeCCCe
Confidence            432 233445667899999999875544443344455678888888888888999999999999999875 899999999


Q ss_pred             EEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc-------ccccCCCeEEEEECC
Q psy13076        244 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-------NPAHKGGVYAVAWKP  316 (423)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~~~i~~l~~~~  316 (423)
                      |++||....+....... ...+.+++|+|++.+ ++++.|+.|++||.+++..+..+.       ..+|...|++++|+|
T Consensus       239 i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  316 (340)
T 4aow_A          239 AMLWDLNEGKHLYTLDG-GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA  316 (340)
T ss_dssp             EEEEETTTTEEEEEEEC-SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred             EEEEEeccCceeeeecC-CceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence            99999887776655544 457999999998754 556789999999998876554432       236888999999999


Q ss_pred             CCCeEEEEeCCCcEEEEecCCcc
Q psy13076        317 DGTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       317 ~~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      +|++|++|+.|++|+|||+++|+
T Consensus       317 dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          317 DGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             TSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCEEEEEeCCCEEEEEeCCCcC
Confidence            99999999999999999998874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-37  Score=291.55  Aligned_cols=280  Identities=18%  Similarity=0.339  Sum_probs=224.5

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeeccc-ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP   86 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~g-h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~   86 (423)
                      +..++.|++..+++++.||.|++||+.++ +....+.. |.++|.+++|+|++++|++|+.||.|++||+++++...   
T Consensus        95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---  170 (401)
T 4aez_A           95 YLNLLDWSNLNVVAVALERNVYVWNADSG-SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR---  170 (401)
T ss_dssp             TCBCEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---
T ss_pred             eEEEEeecCCCEEEEECCCeEEEeeCCCC-cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE---
Confidence            45568898899999999999999999864 44445554 89999999999999999999999999999998754332   


Q ss_pred             CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                                                             .+.+|...|.++.|  ++.++++++.|+.|++||+......
T Consensus       171 ---------------------------------------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          171 ---------------------------------------TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             ---------------------------------------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             ---------------------------------------EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence                                                   23468889999999  5679999999999999999743322


Q ss_pred             EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076        167 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV  246 (423)
Q Consensus       167 ~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~  246 (423)
                      . ..+..+.+.|.+++|+|++                                            . .+++++.|+.|++
T Consensus       210 ~-~~~~~~~~~v~~~~~~~~~--------------------------------------------~-~l~s~~~d~~v~i  243 (401)
T 4aez_A          210 I-GTLQGHSSEVCGLAWRSDG--------------------------------------------L-QLASGGNDNVVQI  243 (401)
T ss_dssp             E-EEEECCSSCEEEEEECTTS--------------------------------------------S-EEEEEETTSCEEE
T ss_pred             e-eEEcCCCCCeeEEEEcCCC--------------------------------------------C-EEEEEeCCCeEEE
Confidence            1 1222334445555555543                                            3 2677889999999


Q ss_pred             EcCCCceeeeeccccccCeEEEEECCCCC-EEEEEE--ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEE
Q psy13076        247 FEGPPFKFKMTKQEHSRFVQAVRYSPSGS-HFASAG--FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT  323 (423)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s  323 (423)
                      ||............|...|.+++|+|++. ++++++  .|+.|++||..+++....+.   +...+.+++|+|++++|++
T Consensus       244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---AGSQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEE
T ss_pred             ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---CCCcEEEEEECCCCCeEEE
Confidence            99887777777788999999999999875 556654  79999999999998877763   5678999999999999999


Q ss_pred             Ee--CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEec
Q psy13076        324 AS--GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALS  401 (423)
Q Consensus       324 ~s--~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~s  401 (423)
                      ++  .|+.|++||+.+++...                                          ...+.+|..+|++++|+
T Consensus       321 ~~g~~dg~i~v~~~~~~~~~~------------------------------------------~~~~~~h~~~v~~~~~s  358 (401)
T 4aez_A          321 THGFPDNNLSIWSYSSSGLTK------------------------------------------QVDIPAHDTRVLYSALS  358 (401)
T ss_dssp             EECTTTCEEEEEEEETTEEEE------------------------------------------EEEEECCSSCCCEEEEC
T ss_pred             EeecCCCcEEEEecCCcccee------------------------------------------EEEecCCCCCEEEEEEC
Confidence            54  89999999987654221                                          12356899999999999


Q ss_pred             CCCCeEEEecCCCcEEEeeCCC
Q psy13076        402 PDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       402 p~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      |++++|++++.||.|++|++.+
T Consensus       359 ~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          359 PDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             TTSSEEEEECTTSEEEEEECCC
T ss_pred             CCCCEEEEEeCCCcEEEEECCC
Confidence            9999999999999999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.1e-38  Score=282.10  Aligned_cols=257  Identities=18%  Similarity=0.279  Sum_probs=199.1

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCC-CCceeecccccCceeEEEEeCC--CCeEEEecCCCceEEeecCCcceeecc
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNP-STPIRVIKGHNKPITALALSPD--RGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~~~~gh~~~V~~l~~~~~--~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      .+++++||++||+|+.||.|++||+... .+++.+|++|.++|.+++|+++  +++|+||+.|++|++||++++...   
T Consensus        14 ~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~---   90 (297)
T 2pm7_B           14 DAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS---   90 (297)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC---
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE---
Confidence            4677789999999999999999999743 3567899999999999999863  889999999999999998764210   


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCC
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~  163 (423)
                                                           ....+.+|...|.+++|+|+  +.+|++++.|++|++||+.+.
T Consensus        91 -------------------------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           91 -------------------------------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             -------------------------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             -------------------------------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence                                                 11134578899999999997  899999999999999999765


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT  243 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~  243 (423)
                      .......+..+...|.+++|+|++..-...                        +        ..+.....+++|+.|++
T Consensus       134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~------------------------~--------~~~~~~~~l~sgs~D~~  181 (297)
T 2pm7_B          134 GTTSPIIIDAHAIGVNSASWAPATIEEDGE------------------------H--------NGTKESRKFVTGGADNL  181 (297)
T ss_dssp             SCBCCEEEECCSSCEEEEEECCCC--------------------------------------------CCEEEEEETTSC
T ss_pred             CceeeeeeecccCccceEeecCCccccccc------------------------C--------CCCCCcceEEEEcCCCc
Confidence            322123344566789999999975321000                        0        00111235899999999


Q ss_pred             EEEEcCCCce----eeeeccccccCeEEEEECCCC---CEEEEEEecCeEEEEECCCccc---eecccccccCCCeEEEE
Q psy13076        244 IAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSG---SHFASAGFDGKVFLYDGASADL---VSELGNPAHKGGVYAVA  313 (423)
Q Consensus       244 i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g---~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~i~~l~  313 (423)
                      |++|+.....    ....+..|...|.+++|+|++   ++|++++.|+.|++||..+...   ...+....|...|.+++
T Consensus       182 v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~  261 (297)
T 2pm7_B          182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS  261 (297)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred             EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEE
Confidence            9999865432    455678899999999999995   7999999999999999876431   11222235788899999


Q ss_pred             ECCCCCeEEEEeCCCcEEEEecCC
Q psy13076        314 WKPDGTQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       314 ~~~~~~~l~s~s~d~~i~iwd~~~  337 (423)
                      |+|++++|++++.|++|++|+...
T Consensus       262 ~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          262 WSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             ECSSSCCEEEEETTSCEEEEEECT
T ss_pred             ECCCCCEEEEEcCCCcEEEEEECC
Confidence            999999999999999999999763

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.8e-36  Score=284.70  Aligned_cols=279  Identities=21%  Similarity=0.325  Sum_probs=216.4

Q ss_pred             eeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccC
Q psy13076         50 ITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE  129 (423)
Q Consensus        50 V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  129 (423)
                      ++.|+||++ .+|++| .|++|++||.+++++...+                                        .+.+
T Consensus       108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~----------------------------------------~~~~  145 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLL----------------------------------------QMEQ  145 (420)
T ss_dssp             CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEE----------------------------------------ECCS
T ss_pred             ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEE----------------------------------------EecC
Confidence            677899875 456555 5899999998887654322                                        1235


Q ss_pred             CcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC
Q psy13076        130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG  209 (423)
Q Consensus       130 h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~  209 (423)
                      |...|++++|+|+|++||+|+.|++|++||+++++.+..  +..+...+                               
T Consensus       146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~--~~~h~~~v-------------------------------  192 (420)
T 4gga_A          146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARV-------------------------------  192 (420)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCE-------------------------------
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE--EeCCCCce-------------------------------
Confidence            778899999999999999999999999999987664432  22222333                               


Q ss_pred             cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-ceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEE
Q psy13076        210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL  288 (423)
Q Consensus       210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~v  288 (423)
                                   .++.+++   ..+++++.|+.+.+|+... ......+..|...+..+.++|+|+++++++.|+.+++
T Consensus       193 -------------~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i  256 (420)
T 4gga_A          193 -------------GSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV  256 (420)
T ss_dssp             -------------EEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             -------------EEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceE
Confidence                         3333332   2478899999999998654 3344566788999999999999999999999999999


Q ss_pred             EECCCccceec--ccccccCCCeEEEEECCCCC-eEEE--EeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcE
Q psy13076        289 YDGASADLVSE--LGNPAHKGGVYAVAWKPDGT-QLLT--ASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY  363 (423)
Q Consensus       289 wd~~~~~~~~~--~~~~~~~~~i~~l~~~~~~~-~l~s--~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~  363 (423)
                      |+..+++....  .....|...|.+++|+|.+. .+++  |+.|++|++||+.+++++..+......  ......+++..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v--~~~~~~~~~~~  334 (420)
T 4gga_A          257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV--CSILWSPHYKE  334 (420)
T ss_dssp             EESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCE--EEEEEETTTTE
T ss_pred             EeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccce--eeeeecCCCCe
Confidence            99987653221  11235888999999999765 4444  457999999999999988777654433  34445568888


Q ss_pred             EEEEe--CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        364 LLTVS--LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       364 l~~~~--~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      +++++  .++.|++||..+. .++..+.||..+|++++|+||+++|+|||.|++|++||+.
T Consensus       335 lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          335 LISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             EEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEEEecCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            87765  6899999999875 4578899999999999999999999999999999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-37  Score=294.06  Aligned_cols=284  Identities=12%  Similarity=0.126  Sum_probs=224.8

Q ss_pred             CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc
Q psy13076         48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY  127 (423)
Q Consensus        48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  127 (423)
                      ..+++++|+|++++|++|+.|+.|++||+.++....                                          .+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~------------------------------------------~~   94 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK------------------------------------------ML   94 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT------------------------------------------TS
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceee------------------------------------------EE
Confidence            445689999999999999999999999987753321                                          12


Q ss_pred             cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076        128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       128 ~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      ..| ..+....|+|++++|++++.|+.|++||+.+.+...  .+..+..+|.+++|+|+++                   
T Consensus        95 ~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~-------------------  152 (420)
T 3vl1_A           95 KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE--IDQAHVSEITKLKFFPSGE-------------------  152 (420)
T ss_dssp             CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE--ETTSSSSCEEEEEECTTSS-------------------
T ss_pred             ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee--ecccccCccEEEEECCCCC-------------------
Confidence            233 344555789999999999999999999987654322  2233445555565555543                   


Q ss_pred             CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEE
Q psy13076        208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF  287 (423)
Q Consensus       208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~  287 (423)
                                                .+++++.|+.|++|+....+....+..|...|.+++|+|++++|++++.||.|+
T Consensus       153 --------------------------~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~  206 (420)
T 3vl1_A          153 --------------------------ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR  206 (420)
T ss_dssp             --------------------------EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             --------------------------EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence                                      267788999999999887777777788999999999999999999999999999


Q ss_pred             EEECCCccceeccccc-ccCCCe---------------------EEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeee
Q psy13076        288 LYDGASADLVSELGNP-AHKGGV---------------------YAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       288 vwd~~~~~~~~~~~~~-~~~~~i---------------------~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~  345 (423)
                      +||.++++....+... .|...+                     .+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence            9999998877665421 233344                     445568899999999999999999999998877775


Q ss_pred             eCceeEeeEEEEEecCc-EEEEEeCCCcEEEEecCCCCCceEEecc-CCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        346 MGNQVEDQQVSCLWQGD-YLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       346 ~~~~~~~~~~~~~~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      ..+......+.+.+++. ++++++.+|.|++||+++...++..+.+ |..+|+++.| |++++|++++.|+.|++|++.
T Consensus       287 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          287 SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred             cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence            55445556677778888 9999999999999999988776777776 6777888854 578899999999999999965

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.1e-37  Score=284.43  Aligned_cols=286  Identities=17%  Similarity=0.178  Sum_probs=233.1

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCC-CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      ++++++||++|++++.||.|++||+.+.. +++..+.+|.++|.+++|+|++++|++++.|+.|++||+++++....+  
T Consensus        13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--   90 (372)
T 1k8k_C           13 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL--   90 (372)
T ss_dssp             EEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE--
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE--
Confidence            45566699999999999999999997532 167789999999999999999999999999999999999765432111  


Q ss_pred             CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee-
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI-  166 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~-  166 (423)
                                                            .+.+|...|.+++|+|+++++++++.|+.|++||+...+.. 
T Consensus        91 --------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  132 (372)
T 1k8k_C           91 --------------------------------------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW  132 (372)
T ss_dssp             --------------------------------------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred             --------------------------------------EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence                                                  12457888999999999999999999999999999876532 


Q ss_pred             -EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEee------------------cCCcceecccCCCcceeEEEE
Q psy13076        167 -LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS------------------ETGTSVGEISGQSKPINSCDF  227 (423)
Q Consensus       167 -~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~i~~~~~  227 (423)
                       .......+...|.+++|+|+++.+++++.+.  ...+|+.                  ..+..+..+..|...+.++.|
T Consensus       133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (372)
T 1k8k_C          133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF--KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF  210 (372)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSSEEEEEETTS--CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred             eeeeeecccCCCeeEEEEcCCCCEEEEEcCCC--CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE
Confidence             2222344568899999999999888876543  3466763                  245666777788899999999


Q ss_pred             ecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCC--ccc--e------
Q psy13076        228 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS--ADL--V------  297 (423)
Q Consensus       228 ~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~--~~~--~------  297 (423)
                      +|++.+ +++++.|+.|++|+....+....+..|...+.+++|+|+++++++| .|+.|++|+..+  ++.  .      
T Consensus       211 ~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~  288 (372)
T 1k8k_C          211 SANGSR-VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVP  288 (372)
T ss_dssp             CSSSSE-EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC
T ss_pred             CCCCCE-EEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcc
Confidence            999875 8899999999999987777777778888899999999999988887 999999999877  320  0      


Q ss_pred             ------------------------------ecccccccCCCeEEEEEC-CCC---CeEEEEeCCCcEEEEecCCcc
Q psy13076        298 ------------------------------SELGNPAHKGGVYAVAWK-PDG---TQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       298 ------------------------------~~~~~~~~~~~i~~l~~~-~~~---~~l~s~s~d~~i~iwd~~~~~  339 (423)
                                                    ..+ ..+|...|.+++|+ ++|   ++|++++.|++|++||+.+++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          289 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGL-DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             --------CHHHHHHHCCCCC---------CCC-SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             ccchhhhcchhhhhhhcccccccccCccccccc-cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence                                          111 13789999999976 676   999999999999999997754

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.6e-37  Score=293.05  Aligned_cols=351  Identities=13%  Similarity=0.137  Sum_probs=225.2

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCC----------ceeeccccc------------CceeEEEEeCCC--CeEEEe
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPST----------PIRVIKGHN------------KPITALALSPDR--GTVFTG   65 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~----------~~~~~~gh~------------~~V~~l~~~~~~--~~l~sg   65 (423)
                      +++++||.+||+|+.||.|++||+.+...          +...+++|.            ++|++++|+|++  .+|+++
T Consensus        34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~  113 (447)
T 3dw8_B           34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLS  113 (447)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEe
Confidence            44445999999999999999999976442          466889998            889999999998  789999


Q ss_pred             cCCCceEEeecCCcceeecccCCCCCCceEEe-eCCCCCe---EEEecCCeEEEEecCCCcccccccCCcceEEEEEECC
Q psy13076         66 SHDGFITRWNAKTEYIFATLPRTQRGQPIVLG-GDPKGKN---FLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP  141 (423)
Q Consensus        66 ~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp  141 (423)
                      +.|++|++||+.++.......... .....+. .......   .+...+     +............+|...|.+++|+|
T Consensus       114 s~d~~i~iw~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          114 TNDKTIKLWKISERDKRPEGYNLK-EEDGRYRDPTTVTTLRVPVFRPMD-----LMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             ECSSCEEEEEEEEEEEEEECCSCC---------CCCCCSCCCCEEEEEE-----EEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             CCCCeEEEEecccccCCcceeccc-CccccccCcccccceEeccccchh-----eeeeccceEEeccCCCcceEEEEEcC
Confidence            999999999998754422111000 0000000 0000000   000000     00000001122368999999999999


Q ss_pred             CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcc
Q psy13076        142 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP  221 (423)
Q Consensus       142 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (423)
                      ++++|++| .|++|++||+.+........           ...                           ...+..|...
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~-----------~~~---------------------------~~~~~~~~~~  228 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEITDRSFNIV-----------DIK---------------------------PANMEELTEV  228 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEEEEEEEEE-----------ECC---------------------------CSSGGGCCCC
T ss_pred             CCCEEEEe-CCCeEEEEECCCCCceeeee-----------ecc---------------------------cccccccCcc
Confidence            99999999 79999999986432211100           000                           0123456667


Q ss_pred             eeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee----eeecccccc------------CeEEEEECCCCCEEEEEEecCe
Q psy13076        222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF----KMTKQEHSR------------FVQAVRYSPSGSHFASAGFDGK  285 (423)
Q Consensus       222 i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~----~~~~~~~~~------------~i~~l~~s~~g~~l~s~s~dg~  285 (423)
                      |.+++|+|++...+++++.|+.|++||......    ...+..|..            .|.+++|+|+|++|++++. +.
T Consensus       229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~  307 (447)
T 3dw8_B          229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS  307 (447)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE
T ss_pred             eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce
Confidence            778888887744588999999999999776553    344555554            8999999999999999998 99


Q ss_pred             EEEEECCC-ccceecccccccCCC---------------eEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCce
Q psy13076        286 VFLYDGAS-ADLVSELGNPAHKGG---------------VYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ  349 (423)
Q Consensus       286 i~vwd~~~-~~~~~~~~~~~~~~~---------------i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~  349 (423)
                      |++||+++ ++.+..+.  .|...               +..++|+|++++|++++.|+.|++||+.+++.+.-......
T Consensus       308 v~iwd~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~  385 (447)
T 3dw8_B          308 VKVWDLNMENRPVETYQ--VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASREN  385 (447)
T ss_dssp             EEEEETTCCSSCSCCEE--SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTT
T ss_pred             EEEEeCCCCccccceee--ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccc
Confidence            99999987 66666553  34321               33499999999999999999999999999876532111110


Q ss_pred             eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        350 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       350 ~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      ......  . ....+..+..         +...........+...|+.++|+|++++|++++.|+ +++|..
T Consensus       386 ~~~~~~--~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          386 NKPRTV--L-KPRKVCASGK---------RKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CCTTCB--C-CCCCEECSSC---------CCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             cccccc--c-CCccccccCC---------cccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence            000000  0 0011111100         000010001224677899999999999999998876 777764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=269.40  Aligned_cols=293  Identities=20%  Similarity=0.306  Sum_probs=221.1

Q ss_pred             CCCceeeccc--ccC--ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCC
Q psy13076         36 PSTPIRVIKG--HNK--PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGN  111 (423)
Q Consensus        36 ~~~~~~~~~g--h~~--~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (423)
                      |..|.++|.+  ..+  ..++|+||+++ +|++| .|++|++||+++++++..+.                         
T Consensus        10 p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~-------------------------   62 (318)
T 4ggc_A           10 PSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQ-------------------------   62 (318)
T ss_dssp             CSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEE-------------------------
T ss_pred             CCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEE-------------------------
Confidence            4455555543  222  35789999975 66655 69999999999876654331                         


Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEE
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMV  191 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~  191 (423)
                                     +.+|...|++++|+|+++++++|+.|++|++||+++++.+....  .+...+             
T Consensus        63 ---------------~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--~h~~~~-------------  112 (318)
T 4ggc_A           63 ---------------MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARV-------------  112 (318)
T ss_dssp             ---------------CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCE-------------
T ss_pred             ---------------ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec--CccceE-------------
Confidence                           23578889999999999999999999999999998776543222  222222             


Q ss_pred             EEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc-eeeeeccccccCeEEEEE
Q psy13076        192 VVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-KFKMTKQEHSRFVQAVRY  270 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~-~~~~~~~~~~~~i~~l~~  270 (423)
                                                     .++.+.  +. .+++++.++.+.+|+.... ........|...+..+++
T Consensus       113 -------------------------------~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (318)
T 4ggc_A          113 -------------------------------GSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  158 (318)
T ss_dssp             -------------------------------EEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             -------------------------------EEeecC--CC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence                                           222222  22 4788889999999876543 344556788899999999


Q ss_pred             CCCCCEEEEEEecCeEEEEECCCccceecc--cccccCCCeEEEEECCCCCeE---EEEeCCCcEEEEecCCcceeeeee
Q psy13076        271 SPSGSHFASAGFDGKVFLYDGASADLVSEL--GNPAHKGGVYAVAWKPDGTQL---LTASGDKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       271 s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l---~s~s~d~~i~iwd~~~~~~i~~~~  345 (423)
                      +++++++++++.||.|++||.++++.....  ....+.+.|.+++++|++..+   ++++.+++|++||...........
T Consensus       159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~  238 (318)
T 4ggc_A          159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD  238 (318)
T ss_dssp             CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE
T ss_pred             cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc
Confidence            999999999999999999999887643221  223567889999999977643   466788999999999887766554


Q ss_pred             eCceeEeeEEEEEecCcEEEEEe--CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        346 MGNQVEDQQVSCLWQGDYLLTVS--LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       346 ~~~~~~~~~~~~~~~g~~l~~~~--~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      ....  .......+.+..+++++  .++.|++||+.+. .+++.+.+|.++|++++|+||+++|+|||.||+|++||+.
T Consensus       239 ~~~~--v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          239 AHSQ--VCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             CSSC--EEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             ceee--eeeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            4333  33445566788777654  7899999999875 5578899999999999999999999999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-37  Score=288.56  Aligned_cols=291  Identities=15%  Similarity=0.202  Sum_probs=231.9

Q ss_pred             ccCceeEEEEeCCCC-eEEEe----------cCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEE
Q psy13076         46 HNKPITALALSPDRG-TVFTG----------SHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVI  114 (423)
Q Consensus        46 h~~~V~~l~~~~~~~-~l~sg----------~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (423)
                      +..+|.+++|+|+++ +|++|          +.|++|++||++++.....                              
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~------------------------------   60 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP------------------------------   60 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC------------------------------
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE------------------------------
Confidence            345789999999987 99999          8999999999987532100                              


Q ss_pred             EEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC--ceeEEeeecCCCCCeeEEEECCC-CCeEE
Q psy13076        115 IRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK--EHILKNEFHPIGGPIKDIAWSPD-NQRMV  191 (423)
Q Consensus       115 i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~-~~~~~  191 (423)
                               .. ...|...|++++|+|++++|++++.|+.|++||+.+.  .......+..+..+|.+++|+|+ +..++
T Consensus        61 ---------~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  130 (416)
T 2pm9_A           61 ---------IA-SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLA  130 (416)
T ss_dssp             ---------SC-CCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEE
T ss_pred             ---------EE-EEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEE
Confidence                     01 1247788999999999999999999999999999862  11123345566789999999998 77777


Q ss_pred             EEEcCCceeeEEEeecCCc------ce---ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccc-
Q psy13076        192 VVGEGRERFGHVFMSETGT------SV---GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH-  261 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~-  261 (423)
                      +++.+  ....+|+...+.      ..   .....|...+.+++|+|++...+++++.|+.|++|+....+.......+ 
T Consensus       131 s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  208 (416)
T 2pm9_A          131 SGGNN--GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS  208 (416)
T ss_dssp             EECSS--SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC
T ss_pred             EEcCC--CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc
Confidence            66543  335667666554      22   2335688899999999996667999999999999998877766666555 


Q ss_pred             -----ccCeEEEEECCCC-CEEEEEEecC---eEEEEECCCcc-ceecccccccCCCeEEEEECC-CCCeEEEEeCCCcE
Q psy13076        262 -----SRFVQAVRYSPSG-SHFASAGFDG---KVFLYDGASAD-LVSELGNPAHKGGVYAVAWKP-DGTQLLTASGDKTC  330 (423)
Q Consensus       262 -----~~~i~~l~~s~~g-~~l~s~s~dg---~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~~~~-~~~~l~s~s~d~~i  330 (423)
                           ...+.+++|+|++ .++++++.|+   .|++||.+++. ....+. ..|...|.+++|+| ++++|++++.|++|
T Consensus       209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v  287 (416)
T 2pm9_A          209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTV  287 (416)
T ss_dssp             CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred             cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCCCE
Confidence                 7789999999998 5899999999   99999999864 444442 15889999999999 99999999999999


Q ss_pred             EEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCC-CeEEE
Q psy13076        331 KLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR-GTVFT  409 (423)
Q Consensus       331 ~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~-~~l~s  409 (423)
                      ++||+++++.+                                            ..+.+|..+|++++|+|++ ++|++
T Consensus       288 ~~wd~~~~~~~--------------------------------------------~~~~~~~~~v~~~~~s~~~~~~l~s  323 (416)
T 2pm9_A          288 LLWNPESAEQL--------------------------------------------SQFPARGNWCFKTKFAPEAPDLFAC  323 (416)
T ss_dssp             EEECSSSCCEE--------------------------------------------EEEECSSSCCCCEEECTTCTTEEEE
T ss_pred             EEeeCCCCccc--------------------------------------------eeecCCCCceEEEEECCCCCCEEEE
Confidence            99999876432                                            3345788999999999999 89999


Q ss_pred             ecCCCcEEEeeCCC
Q psy13076        410 GSHDGFITRWNAKT  423 (423)
Q Consensus       410 ~s~D~~i~~W~~~~  423 (423)
                      ++.|+.|++||+.+
T Consensus       324 ~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          324 ASFDNKIEVQTLQN  337 (416)
T ss_dssp             CCSSSEEEEEESCC
T ss_pred             EecCCcEEEEEccC
Confidence            99999999999753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.7e-37  Score=280.86  Aligned_cols=305  Identities=14%  Similarity=0.181  Sum_probs=204.1

Q ss_pred             eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC
Q psy13076         41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN  120 (423)
Q Consensus        41 ~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  120 (423)
                      ..++||.++|++++|+|++++|++|+.||+|++||+.++...                                      
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--------------------------------------   46 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN--------------------------------------   46 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC--------------------------------------
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc--------------------------------------
Confidence            467899999999999999999999999999999998753210                                      


Q ss_pred             CcccccccCCcceEEEEEECC--CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        121 PAISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                      ......+.+|...|++++|+|  ++++|++++.|++|++||+...+....      ....                    
T Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~------~~~~--------------------  100 (351)
T 3f3f_A           47 WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS------GRRW--------------------  100 (351)
T ss_dssp             EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS------SCSE--------------------
T ss_pred             ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc------ccCc--------------------
Confidence            011234567999999999999  699999999999999999876532100      0000                    


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecC--CCeeEEEEeCCCeEEEEcCCCceeee-------------ecccccc
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPS--RPFRIITGSEDNTIAVFEGPPFKFKM-------------TKQEHSR  263 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~s~s~d~~i~~~~~~~~~~~~-------------~~~~~~~  263 (423)
                                 ..+..+..|...+.+++|+|+  +. .+++++.|+.|++||....+...             ....+..
T Consensus       101 -----------~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (351)
T 3f3f_A          101 -----------NKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ  168 (351)
T ss_dssp             -----------EEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred             -----------ceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccCCccc
Confidence                       001112234445556666665  43 36777788888888754332111             1225667


Q ss_pred             CeEEEEECCC---CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC----CeEEEEeCCCcEEEEecC
Q psy13076        264 FVQAVRYSPS---GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG----TQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       264 ~i~~l~~s~~---g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~l~s~s~d~~i~iwd~~  336 (423)
                      .+.+++|+|+   +.++++++.|+.+.+|+...++........+|...|.+++|+|++    ++|++++.|++|++||++
T Consensus       169 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          169 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             CCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred             ceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence            8999999997   899999999999988888777653223335689999999999998    899999999999999998


Q ss_pred             CcceeeeeeeCceeEeeEEEEEecCcEEEEEeC----CCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecC
Q psy13076        337 TKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL----SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSH  412 (423)
Q Consensus       337 ~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~----~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~  412 (423)
                      .+.......... ..............+..+..    ...+.+|+... ..++..+.+|..+|++++|+|++++|+|++.
T Consensus       249 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~  326 (351)
T 3f3f_A          249 EKLSPLASEESL-TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ-VELLSEHDDHNGEVWSVSWNLTGTILSSAGD  326 (351)
T ss_dssp             ECC----------------------------------------CCSEE-EEEEEEECTTSSCEEEEEECSSSCCEEEEET
T ss_pred             CCcCccccCCcc-cceeccCCCcccccccccccccccceeeeeccccc-ccEEEEEecccccEEEEEEcCCCCEEEEecC
Confidence            764432221110 00011111112222222222    22233333322 2345678899999999999999999999999


Q ss_pred             CCcEEEeeCCC
Q psy13076        413 DGFITRWNAKT  423 (423)
Q Consensus       413 D~~i~~W~~~~  423 (423)
                      ||.|++|++++
T Consensus       327 dg~v~iw~~~~  337 (351)
T 3f3f_A          327 DGKVRLWKATY  337 (351)
T ss_dssp             TSCEEEEEECT
T ss_pred             CCcEEEEecCc
Confidence            99999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-36  Score=278.70  Aligned_cols=283  Identities=18%  Similarity=0.224  Sum_probs=235.2

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      ++++++||++|++++.||.|++||+.+ .+++..+.+|.++|.+++|+|++++|++++.|++|++||+++++....+   
T Consensus        37 ~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---  112 (369)
T 3zwl_B           37 QVKYNKEGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW---  112 (369)
T ss_dssp             EEEECTTSCEEEEEESSSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE---
T ss_pred             EEEEcCCCCEEEEEeCCCEEEEEeCCC-chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---
Confidence            345556999999999999999999976 5678899999999999999999999999999999999999876543321   


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC-----CcEEEEEcCCC
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNK  163 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d-----~~i~vwd~~~~  163 (423)
                                                             . |...|.+++|+|+++++++++.+     +.|++||+...
T Consensus       113 ---------------------------------------~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B          113 ---------------------------------------K-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             ---------------------------------------E-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             ---------------------------------------e-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence                                                   1 55678999999999999999998     99999998754


Q ss_pred             ceeEE---------eeecCCCC--CeeEEEECCCCCeEEEEEcCCceeeEEEeecC-CcceecccCCCcceeEEEEecCC
Q psy13076        164 EHILK---------NEFHPIGG--PIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-GTSVGEISGQSKPINSCDFKPSR  231 (423)
Q Consensus       164 ~~~~~---------~~~~~~~~--~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~  231 (423)
                      .....         .....+..  .+.+++|+|+++.+++++.+.  ...+|+... ...+..+..+...+.+++|+|++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  230 (369)
T 3zwl_B          153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG--KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL  230 (369)
T ss_dssp             TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS--EEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC--EEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence            32110         11112223  899999999999988876543  456777776 56677788899999999999988


Q ss_pred             CeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC--------------eEEEEECCCccce
Q psy13076        232 PFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG--------------KVFLYDGASADLV  297 (423)
Q Consensus       232 ~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg--------------~i~vwd~~~~~~~  297 (423)
                      .+ +++++.|+.|++||....+...... +...+..++|+|+++++++++.++              .+++||..+++.+
T Consensus       231 ~~-l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  308 (369)
T 3zwl_B          231 TY-FITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI  308 (369)
T ss_dssp             SE-EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred             CE-EEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence            75 8899999999999988766655554 667899999999999999999988              8999999999887


Q ss_pred             ecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCccee
Q psy13076        298 SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAV  341 (423)
Q Consensus       298 ~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i  341 (423)
                      ..+.  .|...|.+++|+|++++|++++.|++|++|++..+...
T Consensus       309 ~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  350 (369)
T 3zwl_B          309 GRVQ--GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD  350 (369)
T ss_dssp             EEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred             hhee--cccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence            7764  68899999999999999999999999999999876543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.1e-37  Score=278.87  Aligned_cols=259  Identities=24%  Similarity=0.336  Sum_probs=198.7

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCC-CceeecccccCceeEEEEeC--CCCeEEEecCCCceEEeecCCcceeecc
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSP--DRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~~gh~~~V~~l~~~~--~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      .+++++||++||+|+.|+.|++||+.++. .++..++||.++|.+++|++  ++++|+||+.|++|++||++++...   
T Consensus        18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~---   94 (316)
T 3bg1_A           18 DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE---   94 (316)
T ss_dssp             EEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC---
T ss_pred             EeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce---
Confidence            45666799999999999999999997643 25678999999999999986  4889999999999999998764210   


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCC
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~  163 (423)
                                                           ....+.+|...|++++|+|+  +.+|++++.|++|++||+...
T Consensus        95 -------------------------------------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           95 -------------------------------------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             -------------------------------------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             -------------------------------------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence                                                 11134579999999999998  889999999999999998765


Q ss_pred             cee-EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076        164 EHI-LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       164 ~~~-~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                      ... ....+..+...|.+++|+|+...-.           +....        .++         .+.....+++++.|+
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-----------~~~~~--------~~~---------~~~~~~~l~sgs~D~  189 (316)
T 3bg1_A          138 GQWEVKKINNAHTIGCNAVSWAPAVVPGS-----------LIDHP--------SGQ---------KPNYIKRFASGGCDN  189 (316)
T ss_dssp             SCEEECCBTTSSSSCBCCCEECCCCCC-----------------C--------CSC---------CCCCCCBEECCBTTS
T ss_pred             CCcceeeeeccccCCcceEEEccccCCcc-----------ccccc--------ccc---------CccccceEEEecCCC
Confidence            321 1223345567889999999753100           00000        000         011123589999999


Q ss_pred             eEEEEcCCCc---eeeeeccccccCeEEEEECCCC----CEEEEEEecCeEEEEECCCcc---c-eecccccccCCCeEE
Q psy13076        243 TIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPSG----SHFASAGFDGKVFLYDGASAD---L-VSELGNPAHKGGVYA  311 (423)
Q Consensus       243 ~i~~~~~~~~---~~~~~~~~~~~~i~~l~~s~~g----~~l~s~s~dg~i~vwd~~~~~---~-~~~~~~~~~~~~i~~  311 (423)
                      +|++|+....   +....+..|...|.+++|+|++    ++|++++.||.|++|+..+..   . ...+  ..|...|.+
T Consensus       190 ~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~--~~~~~~v~~  267 (316)
T 3bg1_A          190 LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL--HKFNDVVWH  267 (316)
T ss_dssp             BCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE--EECSSCEEE
T ss_pred             eEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh--hcCCCcEEE
Confidence            9999997532   4556778899999999999987    789999999999999987632   1 1122  357889999


Q ss_pred             EEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076        312 VAWKPDGTQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       312 l~~~~~~~~l~s~s~d~~i~iwd~~~  337 (423)
                      ++|+|++++|++++.|++|++|+...
T Consensus       268 v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          268 VSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            99999999999999999999999763

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-35  Score=266.76  Aligned_cols=278  Identities=14%  Similarity=0.201  Sum_probs=228.9

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      +++ ++++++++++.||.|++||+.+ .+....+.+|.++|.+++|+|++++|++|+.|+.|++|++....         
T Consensus        24 ~~~-~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~---------   92 (313)
T 3odt_A           24 VVA-VDDSKVASVSRDGTVRLWSKDD-QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS---------   92 (313)
T ss_dssp             EEE-EETTEEEEEETTSEEEEEEESS-SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT---------
T ss_pred             EEe-cCCCEEEEEEcCCcEEEEECCC-CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC---------
Confidence            444 6999999999999999999965 55677889999999999999999999999999999999986521         


Q ss_pred             CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe
Q psy13076         90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN  169 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~  169 (423)
                                                    .++....+.+|...|.++.|  ++.++++++.|+.|++||  ..+..  .
T Consensus        93 ------------------------------~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~--~  136 (313)
T 3odt_A           93 ------------------------------GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLV--Y  136 (313)
T ss_dssp             ------------------------------TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEE--E
T ss_pred             ------------------------------CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEE--E
Confidence                                          11223345679999999999  678999999999999999  33332  2


Q ss_pred             eecCCCCCeeEEEECC-CCCeEEEEEcCCceeeEEEeecCCcceecccC-CCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076        170 EFHPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEISG-QSKPINSCDFKPSRPFRIITGSEDNTIAVF  247 (423)
Q Consensus       170 ~~~~~~~~v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~  247 (423)
                      .+..+..++.+++|+| ++..+++++.+..  ..+|+  .......+.. +...+.+++|+|++.  +++++.|+.|++|
T Consensus       137 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~  210 (313)
T 3odt_A          137 NLQAHNASVWDAKVVSFSENKFLTASADKT--IKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLV  210 (313)
T ss_dssp             EEECCSSCEEEEEEEETTTTEEEEEETTSC--EEEEE--TTEEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEE
T ss_pred             ecccCCCceeEEEEccCCCCEEEEEECCCC--EEEEe--cCceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEE
Confidence            3344568899999998 8888877765433  34554  5555556665 888999999999886  8899999999999


Q ss_pred             cCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      +.+..+....+..|...|++++|+|++ .+++++.||.|++||.++++....+.  .|...|.+++|+|+++ +++++.|
T Consensus       211 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~-~~~~~~d  286 (313)
T 3odt_A          211 DMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT--LPAISIWSVDCMSNGD-IIVGSSD  286 (313)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE--CSSSCEEEEEECTTSC-EEEEETT
T ss_pred             ECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe--ccCceEEEEEEccCCC-EEEEeCC
Confidence            998888777888899999999999999 68899999999999999998877764  5788999999999998 6679999


Q ss_pred             CcEEEEecCCcceeeee
Q psy13076        328 KTCKLWDIETKSAVSEF  344 (423)
Q Consensus       328 ~~i~iwd~~~~~~i~~~  344 (423)
                      +.|++||+++++.+...
T Consensus       287 g~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          287 NLVRIFSQEKSRWASED  303 (313)
T ss_dssp             SCEEEEESCGGGCCC--
T ss_pred             CcEEEEeCCCCceeehh
Confidence            99999999988765543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.9e-35  Score=268.63  Aligned_cols=273  Identities=17%  Similarity=0.312  Sum_probs=221.6

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCC--ceeecc--cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcc--ee
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPST--PIRVIK--GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEY--IF   82 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~~~--gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~--~~   82 (423)
                      ++++++||+++++++ ||.|++||+.++..  ++..+.  +|..+|.+++|+|++++|++++.|+.|++||+++++  ..
T Consensus        56 ~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  134 (337)
T 1gxr_A           56 AVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK  134 (337)
T ss_dssp             EEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred             EEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee
Confidence            455666999999998 99999999976432  233333  899999999999999999999999999999998875  33


Q ss_pred             ecccCCCCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcC
Q psy13076         83 ATLPRTQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV  161 (423)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~  161 (423)
                      ..+. ........+.++|+++.++.. .+..+.+|++++++....+.+|...|.+++|+|+++++++++.|+.|++||++
T Consensus       135 ~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  213 (337)
T 1gxr_A          135 AELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             EEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eecc-cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence            3332 223445567889999887765 46789999999999999999999999999999999999999999999999998


Q ss_pred             CCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC
Q psy13076        162 NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED  241 (423)
Q Consensus       162 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d  241 (423)
                      +.+......   ...++.+++|+|+++.                                             +++++.+
T Consensus       214 ~~~~~~~~~---~~~~v~~~~~s~~~~~---------------------------------------------l~~~~~~  245 (337)
T 1gxr_A          214 EGRQLQQHD---FTSQIFSLGYCPTGEW---------------------------------------------LAVGMES  245 (337)
T ss_dssp             TTEEEEEEE---CSSCEEEEEECTTSSE---------------------------------------------EEEEETT
T ss_pred             CCceEeeec---CCCceEEEEECCCCCE---------------------------------------------EEEEcCC
Confidence            766543322   2345666666665543                                             5566778


Q ss_pred             CeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE
Q psy13076        242 NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL  321 (423)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  321 (423)
                      +.+++|+...... .....|...+.+++|+|++++|++++.||.|++||..+++.....   .|...+.+++|+|++++|
T Consensus       246 ~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l  321 (337)
T 1gxr_A          246 SNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             SCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEE
T ss_pred             CcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---cCCCcEEEEEECCCCCEE
Confidence            8889998765543 345678889999999999999999999999999999988876443   477889999999999999


Q ss_pred             EEEeCCCcEEEEec
Q psy13076        322 LTASGDKTCKLWDI  335 (423)
Q Consensus       322 ~s~s~d~~i~iwd~  335 (423)
                      ++++.|+.|++||+
T Consensus       322 ~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          322 VTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSCEEEEEE
T ss_pred             EEecCCCeEEEEEE
Confidence            99999999999996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.6e-36  Score=288.64  Aligned_cols=285  Identities=16%  Similarity=0.163  Sum_probs=207.0

Q ss_pred             eeEEEE-eCCEEEEEeccceEEEEeccCCCC-ceeecccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeecc
Q psy13076          9 QVSCLW-QGDYLLTVSLSGFISYLDVNNPST-PIRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus         9 ~~~~~~-~~~~~~~~~~dg~i~~~d~~~~~~-~~~~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      +++++| ++.+||+|+.||.|+|||+.++.. ....+.||.++|++|+|+| ++.+|+||+.|++|++||++++.+....
T Consensus       124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  203 (435)
T 4e54_B          124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA  203 (435)
T ss_dssp             EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe
Confidence            345555 678999999999999999976543 3445789999999999998 6789999999999999999764321110


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                      .                                        ...+...+.+++|+|++++|++|+.|++|++||++.+. 
T Consensus       204 ~----------------------------------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-  242 (435)
T 4e54_B          204 S----------------------------------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-  242 (435)
T ss_dssp             C----------------------------------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-
T ss_pred             c----------------------------------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-
Confidence            0                                        01233456778999999999999999999999985422 


Q ss_pred             eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076        166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA  245 (423)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~  245 (423)
                      +  ..+                                            .+|...|.+++|+|.++..+++++.|+.|+
T Consensus       243 ~--~~~--------------------------------------------~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~  276 (435)
T 4e54_B          243 L--WNL--------------------------------------------RMHKKKVTHVALNPCCDWFLATASVDQTVK  276 (435)
T ss_dssp             C--CCS--------------------------------------------BCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred             e--EEE--------------------------------------------ecccceEEeeeecCCCceEEEEecCcceee
Confidence            1  111                                            233444555555555555678899999999


Q ss_pred             EEcCCCceee---eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccccc----CCCeEEEEECCCC
Q psy13076        246 VFEGPPFKFK---MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH----KGGVYAVAWKPDG  318 (423)
Q Consensus       246 ~~~~~~~~~~---~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~~~i~~l~~~~~~  318 (423)
                      +||.+.....   .....|...|++++|+|+|++|++++.||.|++||..+++....+....+    ...+....|+|++
T Consensus       277 iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (435)
T 4e54_B          277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY  356 (435)
T ss_dssp             EEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred             EEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC
Confidence            9997654422   23356888999999999999999999999999999998876654432111    1123345677777


Q ss_pred             CeEEEEe------------CCCcEEEEecCCcceeeeeeeCceeEeeEE-EEEecCcEEEEEeCCCcEEEEecCCC
Q psy13076        319 TQLLTAS------------GDKTCKLWDIETKSAVSEFLMGNQVEDQQV-SCLWQGDYLLTVSLSGFISYLDVNNP  381 (423)
Q Consensus       319 ~~l~s~s------------~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~i~~~~~~~~  381 (423)
                      ..+++++            .+++|++||..+++.+..+...+......+ .+.++|.+|++|+ ++.|++|+++++
T Consensus       357 ~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          357 NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence            7766654            346799999999998877654443333333 3567999998876 789999999775

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-36  Score=278.98  Aligned_cols=263  Identities=20%  Similarity=0.275  Sum_probs=202.1

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      +++.++++|.++|++++|+|++++|++|+.||+|++||++....                                    
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------   45 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH------------------------------------   45 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE------------------------------------
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc------------------------------------
Confidence            34668899999999999999999999999999999999863211                                    


Q ss_pred             cCCCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE  195 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~  195 (423)
                          .....+.+|...|++++|+|+  +++|++++.|+.|++||+.+.+......+..+..+|.+++|+|+..       
T Consensus        46 ----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------  114 (379)
T 3jrp_A           46 ----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-------  114 (379)
T ss_dssp             ----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-------
T ss_pred             ----eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCC-------
Confidence                112245679999999999987  9999999999999999998765333333333445555555555410       


Q ss_pred             CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc--eeeeeccccccCeEEEEECC-
Q psy13076        196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF--KFKMTKQEHSRFVQAVRYSP-  272 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~--~~~~~~~~~~~~i~~l~~s~-  272 (423)
                                                         +. .+++++.|+.|++|+....  ........|...|.+++|+| 
T Consensus       115 -----------------------------------~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A          115 -----------------------------------GP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             -----------------------------------CS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             -----------------------------------CC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence                                               22 3677888999999987654  23345567888999999999 


Q ss_pred             ------------CCCEEEEEEecCeEEEEECCCccceec--ccccccCCCeEEEEECCC---CCeEEEEeCCCcEEEEec
Q psy13076        273 ------------SGSHFASAGFDGKVFLYDGASADLVSE--LGNPAHKGGVYAVAWKPD---GTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       273 ------------~g~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~i~~l~~~~~---~~~l~s~s~d~~i~iwd~  335 (423)
                                  ++.++++++.||.|++||++++.....  .....|...|.+++|+|+   +++|++++.|+.|++||+
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence                        699999999999999999987653211  122468899999999999   899999999999999999


Q ss_pred             CCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCc
Q psy13076        336 ETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF  415 (423)
Q Consensus       336 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~  415 (423)
                      .++......                                       .......|...|++++|+|++++|++++.||.
T Consensus       239 ~~~~~~~~~---------------------------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  279 (379)
T 3jrp_A          239 DNEQGPWKK---------------------------------------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  279 (379)
T ss_dssp             SSTTSCCEE---------------------------------------EESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred             CCCCcccee---------------------------------------eeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence            875421100                                       00112458889999999999999999999999


Q ss_pred             EEEeeCC
Q psy13076        416 ITRWNAK  422 (423)
Q Consensus       416 i~~W~~~  422 (423)
                      |++|++.
T Consensus       280 i~iw~~~  286 (379)
T 3jrp_A          280 VTLWKEN  286 (379)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeCC
Confidence            9999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.8e-37  Score=286.47  Aligned_cols=283  Identities=13%  Similarity=0.174  Sum_probs=212.7

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCC-CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      ++++++||++||+++.||.|++||+.+.. ++...+++|.++|.+++|+|++++|++|+.|++|++||++++...     
T Consensus        16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~-----   90 (377)
T 3dwl_C           16 EHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW-----   90 (377)
T ss_dssp             CCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC-----
T ss_pred             EEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce-----
Confidence            56677799999999999999999998643 677789999999999999999999999999999999999865300     


Q ss_pred             CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee-
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI-  166 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~-  166 (423)
                                                        .....+.+|...|.+++|+|++++|++++.|++|++||+++.+.. 
T Consensus        91 ----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  136 (377)
T 3dwl_C           91 ----------------------------------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW  136 (377)
T ss_dssp             ----------------------------------CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC
T ss_pred             ----------------------------------eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce
Confidence                                              011234568899999999999999999999999999999876521 


Q ss_pred             EEeeecC-CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec------------------CCcceecccCCCcceeEEEE
Q psy13076        167 LKNEFHP-IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE------------------TGTSVGEISGQSKPINSCDF  227 (423)
Q Consensus       167 ~~~~~~~-~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~i~~~~~  227 (423)
                      ....+.. +...|.+++|+|+++.+++++.+.  ...+|+..                  .+..+..+ .|...|.+++|
T Consensus       137 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  213 (377)
T 3dwl_C          137 VSKHLKRPLRSTILSLDWHPNNVLLAAGCADR--KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF  213 (377)
T ss_dssp             CCEEECSSCCSCEEEEEECTTSSEEEEEESSS--CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE
T ss_pred             eeeEeecccCCCeEEEEEcCCCCEEEEEeCCC--EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE
Confidence            1122333 678899999999999988877653  34667653                  23344445 78889999999


Q ss_pred             ecCCCeeEEEEeCCCeEEEEcCCCcee----eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc-c-eecc-
Q psy13076        228 KPSRPFRIITGSEDNTIAVFEGPPFKF----KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD-L-VSEL-  300 (423)
Q Consensus       228 ~~~~~~~~~s~s~d~~i~~~~~~~~~~----~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~-~-~~~~-  300 (423)
                      +|++.+ +++++.|+.|++|+......    ...+..|...|.+++|+|+|++|++|+.|+.+ +|+..... . ...+ 
T Consensus       214 sp~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~  291 (377)
T 3dwl_C          214 SPSGNA-LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLD  291 (377)
T ss_dssp             CTTSSC-EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCC
T ss_pred             CCCCCE-EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeec
Confidence            999885 89999999999999766554    56677888999999999999999998877666 56543111 0 0000 


Q ss_pred             -----------------------------------------------cccccCCCeEEEEECCCC-C---eEEEEeCCCc
Q psy13076        301 -----------------------------------------------GNPAHKGGVYAVAWKPDG-T---QLLTASGDKT  329 (423)
Q Consensus       301 -----------------------------------------------~~~~~~~~i~~l~~~~~~-~---~l~s~s~d~~  329 (423)
                                                                     ....|...|.++++.+.. .   .|+|++.||+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~  371 (377)
T 3dwl_C          292 AGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGR  371 (377)
T ss_dssp             SCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSE
T ss_pred             ccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCc
Confidence                                                           001388999999976644 3   6999999999


Q ss_pred             EEEEec
Q psy13076        330 CKLWDI  335 (423)
Q Consensus       330 i~iwd~  335 (423)
                      |++||+
T Consensus       372 i~iWdl  377 (377)
T 3dwl_C          372 VVLWTL  377 (377)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.1e-35  Score=279.72  Aligned_cols=277  Identities=20%  Similarity=0.332  Sum_probs=222.4

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      +.++.+||+++++|+.||.|++||+.+ .++...+.+|.++|.+++|  ++++|++|+.||+|++||+++++...     
T Consensus       136 v~~~~~d~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~-----  207 (435)
T 1p22_A          136 VYCLQYDDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN-----  207 (435)
T ss_dssp             EEEEECCSSEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE-----
T ss_pred             EEEEEECCCEEEEEeCCCeEEEEeCCC-CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE-----
Confidence            556668999999999999999999976 5677889999999999999  77899999999999999998764432     


Q ss_pred             CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                                                           .+.+|...|.+++|++  .++++++.|++|++||+.+......
T Consensus       208 -------------------------------------~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~  248 (435)
T 1p22_A          208 -------------------------------------TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITL  248 (435)
T ss_dssp             -------------------------------------EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEE
T ss_pred             -------------------------------------EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCcee
Confidence                                                 2346888899999974  5999999999999999876543211


Q ss_pred             -eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076        169 -NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF  247 (423)
Q Consensus       169 -~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~  247 (423)
                       ..+                                            .+|...+.++.+.  +. .+++++.|+.|++|
T Consensus       249 ~~~~--------------------------------------------~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vw  281 (435)
T 1p22_A          249 RRVL--------------------------------------------VGHRAAVNVVDFD--DK-YIVSASGDRTIKVW  281 (435)
T ss_dssp             EEEE--------------------------------------------CCCSSCEEEEEEE--TT-EEEEEETTSEEEEE
T ss_pred             eeEe--------------------------------------------cCCCCcEEEEEeC--CC-EEEEEeCCCeEEEE
Confidence             111                                            2233445555552  22 48889999999999


Q ss_pred             cCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      |....+.......|...+.++++  ++.++++|+.||.|++||.++++.+..+.  +|...|.+++|  ++++|++|+.|
T Consensus       282 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~--~~~~l~sg~~d  355 (435)
T 1p22_A          282 NTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRF--DNKRIVSGAYD  355 (435)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEC--CSSEEEEEETT
T ss_pred             ECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe--CCcCcEEEEEe--cCCEEEEEeCC
Confidence            99888888888889999999998  46899999999999999999998887774  58899999998  78899999999


Q ss_pred             CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeE
Q psy13076        328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV  407 (423)
Q Consensus       328 ~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l  407 (423)
                      ++|++||+.++.....                                   ......+..+.+|..+|++++|  ++++|
T Consensus       356 g~i~vwd~~~~~~~~~-----------------------------------~~~~~~~~~~~~h~~~v~~l~~--~~~~l  398 (435)
T 1p22_A          356 GKIKVWDLVAALDPRA-----------------------------------PAGTLCLRTLVEHSGRVFRLQF--DEFQI  398 (435)
T ss_dssp             SCEEEEEHHHHTSTTS-----------------------------------CTTTTEEEEECCCSSCCCCEEE--CSSCE
T ss_pred             CcEEEEECCCCCCccc-----------------------------------cccchheeeccCCCCCeEEEEe--CCCEE
Confidence            9999999876541100                                   0011234567889999999999  78899


Q ss_pred             EEecCCCcEEEeeCC
Q psy13076        408 FTGSHDGFITRWNAK  422 (423)
Q Consensus       408 ~s~s~D~~i~~W~~~  422 (423)
                      ++++.||+|++||+.
T Consensus       399 ~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          399 VSSSHDDTILIWDFL  413 (435)
T ss_dssp             EECCSSSEEEEEC--
T ss_pred             EEEeCCCEEEEEECC
Confidence            999999999999975

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.6e-36  Score=281.89  Aligned_cols=290  Identities=16%  Similarity=0.248  Sum_probs=216.8

Q ss_pred             eeEEEEeCC-EEEEEeccceEEEEeccCCC---CceeecccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceee
Q psy13076          9 QVSCLWQGD-YLLTVSLSGFISYLDVNNPS---TPIRVIKGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus         9 ~~~~~~~~~-~~~~~~~dg~i~~~d~~~~~---~~~~~~~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      .++++++.. ++++++.||.|++||+....   ..+..+.+|.++|.+++|+| ++++|++|+.||+|++||+.++....
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~  118 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL  118 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence            355555433 33357899999999986533   34557889999999999999 89999999999999999998753211


Q ss_pred             cccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCC-CEEEEEccCCcEEEEEcCC
Q psy13076         84 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~~~d~~i~vwd~~~  162 (423)
                      ..                                   ......+.+|...|.+++|+|++ .++++++.|++|++||+.+
T Consensus       119 ~~-----------------------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  163 (402)
T 2aq5_A          119 PL-----------------------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT  163 (402)
T ss_dssp             CB-----------------------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT
T ss_pred             cc-----------------------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC
Confidence            10                                   12234567899999999999998 6999999999999999987


Q ss_pred             CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076        163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                      ++.........+...|.+++|+|+++                                            + +++++.|+
T Consensus       164 ~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------------------------~-l~~~~~d~  198 (402)
T 2aq5_A          164 GAAVLTLGPDVHPDTIYSVDWSRDGA--------------------------------------------L-ICTSCRDK  198 (402)
T ss_dssp             TEEEEEECTTTCCSCEEEEEECTTSS--------------------------------------------C-EEEEETTS
T ss_pred             CCccEEEecCCCCCceEEEEECCCCC--------------------------------------------E-EEEEecCC
Confidence            65443221133445555566555543                                            2 66788899


Q ss_pred             eEEEEcCCCceeeeec-cccccC-eEEEEECCCCCEEEEE---EecCeEEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076        243 TIAVFEGPPFKFKMTK-QEHSRF-VQAVRYSPSGSHFASA---GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD  317 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~-~~~~~~-i~~l~~s~~g~~l~s~---s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~  317 (423)
                      .|++||....+..... ..|... +.+++|+|+|+++++|   +.|+.|++||.++++.........|...+.+++|+|+
T Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  278 (402)
T 2aq5_A          199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD  278 (402)
T ss_dssp             EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred             cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence            9999998877766666 566655 8899999999999999   7899999999988765222222246678999999999


Q ss_pred             CCeEEE-EeCCCcEEEEecCCcce-eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCce
Q psy13076        318 GTQLLT-ASGDKTCKLWDIETKSA-VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPI  395 (423)
Q Consensus       318 ~~~l~s-~s~d~~i~iwd~~~~~~-i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v  395 (423)
                      +++|++ ++.|+.|++||+.+++. +..                                         +... .|..+|
T Consensus       279 ~~~l~~~g~~dg~i~i~d~~~~~~~~~~-----------------------------------------l~~~-~~~~~v  316 (402)
T 2aq5_A          279 TNIVYLCGKGDSSIRYFEITSEAPFLHY-----------------------------------------LSMF-SSKESQ  316 (402)
T ss_dssp             TTEEEEEETTCSCEEEEEECSSTTCEEE-----------------------------------------EEEE-CCSSCC
T ss_pred             CCEEEEEEcCCCeEEEEEecCCCcceEe-----------------------------------------eccc-ccCCcc
Confidence            999975 55799999999987652 111                                         1111 266889


Q ss_pred             eEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        396 TALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       396 ~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      ++++|+|++.++++  .|+.+++|++.
T Consensus       317 ~~~~~sp~~~~~~s--~~~~~~~~~l~  341 (402)
T 2aq5_A          317 RGMGYMPKRGLEVN--KCEIARFYKLH  341 (402)
T ss_dssp             SEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred             cceEEeccccccee--cceeEEEEEcC
Confidence            99999999998864  46689999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2e-35  Score=276.27  Aligned_cols=278  Identities=17%  Similarity=0.198  Sum_probs=213.7

Q ss_pred             eeEEEEeC-CEEEEEeccceEEEEeccCCCCceeec--ccccCceeEEEEeC-CCCeEEEecCCCceEEeecCCcceeec
Q psy13076          9 QVSCLWQG-DYLLTVSLSGFISYLDVNNPSTPIRVI--KGHNKPITALALSP-DRGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus         9 ~~~~~~~~-~~~~~~~~dg~i~~~d~~~~~~~~~~~--~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      +++++++| ++|++|+.||.|++||+.+.. ....+  .+|.++|.+++|+| ++++|++++.|++|++||+++..+. .
T Consensus        78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~  155 (383)
T 3ei3_B           78 SLEWHPTHPTTVAVGSKGGDIILWDYDVQN-KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQ-V  155 (383)
T ss_dssp             EEEECSSCTTEEEEEEBTSCEEEEETTSTT-CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEE-E
T ss_pred             EEEECCCCCCEEEEEcCCCeEEEEeCCCcc-cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceE-E
Confidence            44555687 999999999999999998643 34444  47999999999999 6789999999999999999753221 1


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE  164 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~  164 (423)
                      +.                                       ...+|...|.+++|+|+++++++++.|+.|++||+. .+
T Consensus       156 ~~---------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~  195 (383)
T 3ei3_B          156 FA---------------------------------------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH  195 (383)
T ss_dssp             EE---------------------------------------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC
T ss_pred             Ee---------------------------------------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC
Confidence            10                                       112456789999999999999999999999999984 34


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCC-eEEEEEcCCceeeEEEeecC----CcceecccCCCcceeEEEEec-CCCeeEEEE
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQ-RMVVVGEGRERFGHVFMSET----GTSVGEISGQSKPINSCDFKP-SRPFRIITG  238 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~~~~s~  238 (423)
                      ...  .+..+...|.+++|+|+++ .+++++.+  ....+|+...    +..+..+ .|...+.+++|+| ++.+ ++++
T Consensus       196 ~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~-l~~~  269 (383)
T 3ei3_B          196 EIF--KEKLHKAKVTHAEFNPRCDWLMATSSVD--ATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTK-LLTT  269 (383)
T ss_dssp             EEE--EEECSSSCEEEEEECSSCTTEEEEEETT--SEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCE-EEEE
T ss_pred             EEE--EeccCCCcEEEEEECCCCCCEEEEEeCC--CEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCE-EEEE
Confidence            332  3445678899999999999 55555443  3457787776    3334434 6888999999999 7765 8899


Q ss_pred             eCCCeEEEEcCCCceeeeecccc-------c----------cCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc
Q psy13076        239 SEDNTIAVFEGPPFKFKMTKQEH-------S----------RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG  301 (423)
Q Consensus       239 s~d~~i~~~~~~~~~~~~~~~~~-------~----------~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~  301 (423)
                      +.|+.|++|+.........+..|       .          ..+..++|+|+|++  +|+.||.|++||..+++.+..+.
T Consensus       270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~  347 (383)
T 3ei3_B          270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR  347 (383)
T ss_dssp             ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred             cCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence            99999999997654332222221       1          23445677777776  77899999999999999888876


Q ss_pred             ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076        302 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       302 ~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~  337 (423)
                      ...|...+..++|+|++++|++++ |+.|++||+++
T Consensus       348 ~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          348 DPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             BTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            545677788889999999999997 99999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9e-35  Score=278.84  Aligned_cols=307  Identities=19%  Similarity=0.268  Sum_probs=218.5

Q ss_pred             CceeecccccCce-eEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076         38 TPIRVIKGHNKPI-TALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR  116 (423)
Q Consensus        38 ~~~~~~~gh~~~V-~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  116 (423)
                      .+...+++|.++| .++++  ++++|++|+.||+|++||+++++.+.                                 
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---------------------------------  156 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---------------------------------  156 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---------------------------------
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---------------------------------
Confidence            3456889998885 56665  46799999999999999998764332                                 


Q ss_pred             ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC--CCCeEEEEE
Q psy13076        117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMVVVG  194 (423)
Q Consensus       117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~~~~~~  194 (423)
                               .+.+|...|.+++|+|++ ++++|+.|++|++||+++++...  .+..+..+|.+++|++  +++.+++++
T Consensus       157 ---------~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~~l~s~s  224 (464)
T 3v7d_B          157 ---------QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGS  224 (464)
T ss_dssp             ---------EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEEESSSCEEEEEEE
T ss_pred             ---------EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE--EECCCCCccEEEEEecCCCCCEEEEEc
Confidence                     345799999999999988 99999999999999998776543  3344556677777763  444444433


Q ss_pred             cCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC
Q psy13076        195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG  274 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g  274 (423)
                      .+.  ...+|+...+.......... ........|..                   ..........|...+.++  ++++
T Consensus       225 ~d~--~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~-------------------~~~~~~~~~~~~~~v~~~--~~~~  280 (464)
T 3v7d_B          225 RDN--TLHVWKLPKESSVPDHGEEH-DYPLVFHTPEE-------------------NPYFVGVLRGHMASVRTV--SGHG  280 (464)
T ss_dssp             TTS--CEEEEECCCCCCC------C-CSSEEESCGGG-------------------CTTEEEEECCCSSCEEEE--EEET
T ss_pred             CCC--cEEEeeCCCCcccccccccC-CcceEeeccCC-------------------CeEEEEEccCccceEEEE--cCCC
Confidence            221  12333333222111100000 00000000000                   001122345666667665  6789


Q ss_pred             CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeE
Q psy13076        275 SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQ  354 (423)
Q Consensus       275 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~  354 (423)
                      +++++|+.||.|++||..+++.+..+.  +|...|.+++|+|++++|++++.|++|++||+++++++..+..+.. ..  
T Consensus       281 ~~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v--  355 (464)
T 3v7d_B          281 NIVVSGSYDNTLIVWDVAQMKCLYILS--GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA-LV--  355 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CE--
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-cE--
Confidence            999999999999999999988877764  6889999999999999999999999999999999988877753321 12  


Q ss_pred             EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        355 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      ..+.+++.++++++.||.+++||+.+.....  ...|...+..++|+|++++|++++ |+.|++||+++
T Consensus       356 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          356 GLLRLSDKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             EEEEECSSEEEEEETTSEEEEEETTTCCEEE--EEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred             EEEEEcCCEEEEEeCCCcEEEEECCCCceee--eecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence            2334578999999999999999998865432  234777899999999999999998 89999999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.7e-36  Score=275.90  Aligned_cols=274  Identities=14%  Similarity=0.174  Sum_probs=217.5

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeeccc-----ccCceeEEEEeCC----CCeEEEecCCCceEEeecCCcceeeccc
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKG-----HNKPITALALSPD----RGTVFTGSHDGFITRWNAKTEYIFATLP   86 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~g-----h~~~V~~l~~~~~----~~~l~sg~~D~~i~vW~~~~~~~~~~~~   86 (423)
                      ..++++++.++.|++||+.+. +.+..+++     |.+.|.+++|+|+    +++|++|+.||.|++||+++++.+.   
T Consensus        34 ~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---  109 (366)
T 3k26_A           34 DPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---  109 (366)
T ss_dssp             SCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE---
T ss_pred             CceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee---
Confidence            556777788889999999753 44555554     5578999999998    6799999999999999988654322   


Q ss_pred             CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCce
Q psy13076         87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                                                             .+.+|...|.+++|+| ++.++++++.|+.|++||+.+++.
T Consensus       110 ---------------------------------------~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  150 (366)
T 3k26_A          110 ---------------------------------------HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL  150 (366)
T ss_dssp             ---------------------------------------EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE
T ss_pred             ---------------------------------------eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE
Confidence                                                   2456888999999999 999999999999999999988765


Q ss_pred             eEEee-ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc----------------------------
Q psy13076        166 ILKNE-FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS----------------------------  216 (423)
Q Consensus       166 ~~~~~-~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  216 (423)
                      ..... +..+...|.+++|+|+++.+++++.+.  ...+|+...+.....+.                            
T Consensus       151 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          151 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH--SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             EEEECSTTSCSSCEEEEEECTTSSEEEEEETTS--CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             EEEecccccccCceeEEEECCCCCEEEEecCCC--CEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence            44321 145678899999999999998887543  35677776554443333                            


Q ss_pred             CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc--------------eeeeeccccccCeEEEEECCC--CCEEEEE
Q psy13076        217 GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF--------------KFKMTKQEHSRFVQAVRYSPS--GSHFASA  280 (423)
Q Consensus       217 ~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~--------------~~~~~~~~~~~~i~~l~~s~~--g~~l~s~  280 (423)
                      .|...|.++.|+  +. .+++++.|+.|++|+....              ........|...|.+++|+|+  |++|++|
T Consensus       229 ~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~  305 (366)
T 3k26_A          229 IHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG  305 (366)
T ss_dssp             SCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred             CCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence            288899999998  33 5899999999999996543              224456677888999999999  9999999


Q ss_pred             EecCeEEEEECCCcccee----cccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076        281 GFDGKVFLYDGASADLVS----ELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       281 s~dg~i~vwd~~~~~~~~----~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~  337 (423)
                      +.||.|++||+.+++...    .+....|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus       306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            999999999999876543    443323378999999999999999999999999999853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.4e-34  Score=272.30  Aligned_cols=280  Identities=17%  Similarity=0.284  Sum_probs=215.3

Q ss_pred             EEE-eCCEEEEEeccceEEEEeccCCCCceeec--ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076         12 CLW-QGDYLLTVSLSGFISYLDVNNPSTPIRVI--KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus        12 ~~~-~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      +.| .++.|| .+.|+.|+|||..++ +....+  .+|.+.|++|+|+|++++|++|+.|++|++||+++++.+..+..+
T Consensus       111 l~wS~~n~lA-vgld~tV~lWd~~tg-~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h  188 (420)
T 4gga_A          111 VDWSSGNVLA-VALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH  188 (420)
T ss_dssp             EEECTTSEEE-EEETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEECCCCEEE-EEeCCEEEEEECCCC-CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCC
Confidence            456 345555 456999999999864 444444  578889999999999999999999999999999999887776543


Q ss_pred             CCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCC-cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         89 QRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENP-AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                       ......+.+  ++..++.. .+..+.+|+.... .....+.+|...+..+.++|+++++++++.|+.+++|+..+.+..
T Consensus       189 -~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~  265 (420)
T 4gga_A          189 -SARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG  265 (420)
T ss_dssp             -SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC
T ss_pred             -CCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc
Confidence             233333433  45555554 4678899998754 445678899999999999999999999999999999998765421


Q ss_pred             E--EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076        167 L--KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI  244 (423)
Q Consensus       167 ~--~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i  244 (423)
                      .  ......+...|.+++|+|.+..+++                                          .++|+.|++|
T Consensus       266 ~~~~~~~~~~~~~V~~~~~~p~~~~~la------------------------------------------~~~gs~D~~I  303 (420)
T 4gga_A          266 WVPLQTFTQHQGAVKAVAWCPWQSNVLA------------------------------------------TGGGTSDRHI  303 (420)
T ss_dssp             SCCSEEECCCSSCEEEEEECTTCTTEEE------------------------------------------EEECTTTCEE
T ss_pred             ceeeeeecccCCceeeeeeCCCcccEEE------------------------------------------EEeecCCCEE
Confidence            1  1122233455666666665443321                                          2345689999


Q ss_pred             EEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE--ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEE
Q psy13076        245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG--FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL  322 (423)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  322 (423)
                      ++|+............+ ..+.++.|+|+++.+++++  .|+.|++||..+++.+.++.  +|.+.|.+++|+|+|++|+
T Consensus       304 ~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~--gH~~~V~~l~~spdg~~l~  380 (420)
T 4gga_A          304 RIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVA  380 (420)
T ss_dssp             EEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEE
T ss_pred             EEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEE
Confidence            99998877766555444 4688899999999888766  68999999999999888874  6999999999999999999


Q ss_pred             EEeCCCcEEEEecCCccee
Q psy13076        323 TASGDKTCKLWDIETKSAV  341 (423)
Q Consensus       323 s~s~d~~i~iwd~~~~~~i  341 (423)
                      ||+.|++|+|||+......
T Consensus       381 S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          381 SAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             EEETTTEEEEECCSCSSCC
T ss_pred             EEecCCeEEEEECCCCCcc
Confidence            9999999999999765443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.7e-34  Score=260.16  Aligned_cols=277  Identities=17%  Similarity=0.279  Sum_probs=211.2

Q ss_pred             EEE-eCCEEEEEeccceEEEEeccCCCCceeec--ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076         12 CLW-QGDYLLTVSLSGFISYLDVNNPSTPIRVI--KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus        12 ~~~-~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      +.| .+++|| ++.|+.|++||+.+ .+++.++  .+|...|++++|+|++++|+||+.|++|++||+++++.+..+..+
T Consensus        31 l~WS~~~~lA-vg~D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h  108 (318)
T 4ggc_A           31 VDWSSGNVLA-VALDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH  108 (318)
T ss_dssp             EEECTTSEEE-EEETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEECCCCEEE-EEeCCEEEEEECCC-CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCc
Confidence            345 244555 46799999999986 4555555  578889999999999999999999999999999999887776543


Q ss_pred             CCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCC-cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         89 QRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENP-AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                      . ..  .....+.+..++.. ....+.+|+.... .....+.+|...+..+.++++++++++++.|++|++||+.+++..
T Consensus       109 ~-~~--~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  185 (318)
T 4ggc_A          109 S-AR--VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG  185 (318)
T ss_dssp             S-SC--EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred             c-ce--EEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence            2 22  22334445555554 4567777777654 455678899999999999999999999999999999999865432


Q ss_pred             E--EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076        167 L--KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI  244 (423)
Q Consensus       167 ~--~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i  244 (423)
                      .  ........+.|.+++++|++..++                                          .+++++.++.|
T Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~i  223 (318)
T 4ggc_A          186 WVPLQTFTQHQGAVKAVAWCPWQSNVL------------------------------------------ATGGGTSDRHI  223 (318)
T ss_dssp             SCCSEEECCCCSCEEEEEECTTSTTEE------------------------------------------EEEECTTTCEE
T ss_pred             ccceeeecccCCceEEEEecCCCCcEE------------------------------------------EEEecCCCCEE
Confidence            1  112223345566666666554332                                          13466778899


Q ss_pred             EEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE--ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEE
Q psy13076        245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG--FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL  322 (423)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  322 (423)
                      ++|+......... ..+...+..+.|+|+++.+++++  .|+.|++||..+++.+.++.  +|.+.|++++|+|+|++|+
T Consensus       224 ~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--gH~~~V~~l~~spdg~~l~  300 (318)
T 4ggc_A          224 RIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVA  300 (318)
T ss_dssp             EEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEE
T ss_pred             EEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEE
Confidence            9999766554333 34556788999999999887765  79999999999999888874  6999999999999999999


Q ss_pred             EEeCCCcEEEEecCCc
Q psy13076        323 TASGDKTCKLWDIETK  338 (423)
Q Consensus       323 s~s~d~~i~iwd~~~~  338 (423)
                      |||.|++|+|||+.+.
T Consensus       301 S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          301 SAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEETTTEEEEECCSCC
T ss_pred             EEecCCeEEEEECCCC
Confidence            9999999999998654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.8e-35  Score=270.42  Aligned_cols=281  Identities=14%  Similarity=0.179  Sum_probs=207.6

Q ss_pred             eeEEEEeCCEE-EEEec---cceEEEEeccCCCCceeecccccCceeEEEEeCC---CCeEEEecCCCceEEeecCCcc-
Q psy13076          9 QVSCLWQGDYL-LTVSL---SGFISYLDVNNPSTPIRVIKGHNKPITALALSPD---RGTVFTGSHDGFITRWNAKTEY-   80 (423)
Q Consensus         9 ~~~~~~~~~~~-~~~~~---dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~---~~~l~sg~~D~~i~vW~~~~~~-   80 (423)
                      +++++++|..+ ++++.   ||.|++||+.++........+|.++|.+++|+|+   +.+|++|+.|+.|++||++++. 
T Consensus        23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  102 (357)
T 3i2n_A           23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM  102 (357)
T ss_dssp             EEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS
T ss_pred             EEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc
Confidence            44555678555 55555   9999999998644333334489999999999998   6999999999999999999876 


Q ss_pred             eeecccCCCCCCceEE------eeCCCCCeEEEec-CCeEEEEecCCCc-ccccccCCcc----eEEEEE----ECCCCC
Q psy13076         81 IFATLPRTQRGQPIVL------GGDPKGKNFLYTN-GNSVIIRNIENPA-ISDIYTEHSC----AVNVAK----YSPSGF  144 (423)
Q Consensus        81 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~~~~h~~----~i~~~~----~sp~~~  144 (423)
                      ....+..+ ......+      .++|+++.++..+ +..+++|+++++. ....+..|..    .+.++.    |+|+++
T Consensus       103 ~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  181 (357)
T 3i2n_A          103 PVYSVKGH-KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER  181 (357)
T ss_dssp             CSEEECCC-SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC
T ss_pred             cEEEEEec-ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC
Confidence            44444322 2333333      4578888777654 6789999998876 5666655554    888888    789999


Q ss_pred             EEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC---CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcc
Q psy13076        145 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP---DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP  221 (423)
Q Consensus       145 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (423)
                      ++++++.|+.|++||+++.+....   ..+..+|.+++|+|   ++.                                 
T Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~---------------------------------  225 (357)
T 3i2n_A          182 VVCAGYDNGDIKLFDLRNMALRWE---TNIKNGVCSLEFDRKDISMN---------------------------------  225 (357)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEESCSSSSCC---------------------------------
T ss_pred             EEEEEccCCeEEEEECccCceeee---cCCCCceEEEEcCCCCCCCC---------------------------------
Confidence            999999999999999987664322   22345566666666   333                                 


Q ss_pred             eeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee-----eccccccCeEEEEECCCCC-EEEEEEecCeEEEEECCCcc
Q psy13076        222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM-----TKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASAD  295 (423)
Q Consensus       222 i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~-----~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~~  295 (423)
                                  .+++++.|+.|++|+........     ....|...|.+++|+|+++ ++++++.||.|++||++.+.
T Consensus       226 ------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          226 ------------KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             ------------EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             ------------EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence                        25667788888888865433222     2337888999999999998 89999999999999987543


Q ss_pred             c-------------------eecccccccCCCeEEEEECCCCCeEE-EEeCCCcEEEEecCCcce
Q psy13076        296 L-------------------VSELGNPAHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDIETKSA  340 (423)
Q Consensus       296 ~-------------------~~~~~~~~~~~~i~~l~~~~~~~~l~-s~s~d~~i~iwd~~~~~~  340 (423)
                      .                   +..+  ..|...|.+++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus       294 ~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          294 QRSKKDSEGIEMGVAGSVSLLQNV--TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CC--CCTTSCCCCCCCEEEEEEEE--ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             ccccccCCCCccccccccceeecc--ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            2                   2223  46889999999999999998 899999999999987653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.5e-35  Score=268.08  Aligned_cols=282  Identities=12%  Similarity=0.074  Sum_probs=218.6

Q ss_pred             ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076         42 VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP  121 (423)
Q Consensus        42 ~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (423)
                      ...+|.++|.+++|+|++++|++|+.|+.|++||++++....                                      
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~--------------------------------------   47 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV--------------------------------------   47 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE--------------------------------------
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc--------------------------------------
Confidence            456899999999999999999999999999999987642000                                      


Q ss_pred             cccccccCCcceEEEEEECCCCC-EEEEEccCCcEEEEEc-CCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        122 AISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDT-VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       122 ~~~~~~~~h~~~i~~~~~sp~~~-~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                       ....+.+|...|++++|+|+++ ++++++.|+.|++||+ .+.+.   ..+..                          
T Consensus        48 -~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~--------------------------   97 (342)
T 1yfq_A           48 -DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF---QALTN--------------------------   97 (342)
T ss_dssp             -EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---EECBS--------------------------
T ss_pred             -cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---Eeccc--------------------------
Confidence             0012236888999999999999 9999999999999998 66542   11222                          


Q ss_pred             eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC---------ceeeeeccccccCeEEEEE
Q psy13076        200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP---------FKFKMTKQEHSRFVQAVRY  270 (423)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~---------~~~~~~~~~~~~~i~~l~~  270 (423)
                                      ..|...|.+++|+| +. .+++++.|+.|++|+...         .+...... +...+.+++|
T Consensus        98 ----------------~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  158 (342)
T 1yfq_A           98 ----------------NEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT  158 (342)
T ss_dssp             ----------------CCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred             ----------------cCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence                            00334455555665 33 377888899999998654         33333333 7788999999


Q ss_pred             CCCCCEEEEEEecCeEEEEECCC-ccceecccccccCCCeEEEEECC-CCCeEEEEeCCCcEEEEecCCc------ceee
Q psy13076        271 SPSGSHFASAGFDGKVFLYDGAS-ADLVSELGNPAHKGGVYAVAWKP-DGTQLLTASGDKTCKLWDIETK------SAVS  342 (423)
Q Consensus       271 s~~g~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~s~s~d~~i~iwd~~~~------~~i~  342 (423)
                      +|++  +++++.|+.|++||.++ +..........|...+.+++|+| ++++|++++.|+.|++|++...      +.+.
T Consensus       159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  236 (342)
T 1yfq_A          159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence            9987  99999999999999987 55432222235788899999999 9999999999999999999876      5555


Q ss_pred             eeeeCce--------eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccC-CCceeEEEecCCCCeEEEecCC
Q psy13076        343 EFLMGNQ--------VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH-NKPITALALSPDRGTVFTGSHD  413 (423)
Q Consensus       343 ~~~~~~~--------~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~l~s~s~D  413 (423)
                      .+.....        .....+.+.+++.+|++++.+|.|++||+.+.. .+..+.+| ..+|++++  |++++|++++.|
T Consensus       237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D  313 (342)
T 1yfq_A          237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDSVVKIA--CSDNILCLATSD  313 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-EEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred             eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh-HhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence            5543221        134456667789999999999999999998754 46778888 99999999  999999999999


Q ss_pred             Cc
Q psy13076        414 GF  415 (423)
Q Consensus       414 ~~  415 (423)
                      |+
T Consensus       314 g~  315 (342)
T 1yfq_A          314 DT  315 (342)
T ss_dssp             TH
T ss_pred             Cc
Confidence            98

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-36  Score=283.99  Aligned_cols=309  Identities=13%  Similarity=0.090  Sum_probs=232.2

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      |++++||+++|+|+.|++|+  |...+    ..++||.+.|.+++|+|+|       .|+++++|+.+...         
T Consensus        21 v~~SpDG~~iASas~D~TV~--d~~~~----~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~---------   78 (588)
T 2j04_A           21 LTWARDGTLYLTTFPDISIG--QPKYA----KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG---------   78 (588)
T ss_dssp             EEECTTSCEEEECSSSEEEE--EECCC----SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---------
T ss_pred             EEECCCCCEEEEEcCCceee--ccccc----ceecCCCccEEEEEECCCC-------CcceEEEEeCCCce---------
Confidence            44445999999999999998  64432    3558999999999999988       56666666543211         


Q ss_pred             CCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccccc-CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE
Q psy13076         90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK  168 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~  168 (423)
                                                          .+. +|...|.+++|+|+|+++|+++.||+|++||.+.  ....
T Consensus        79 ------------------------------------~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~  120 (588)
T 2j04_A           79 ------------------------------------LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN  120 (588)
T ss_dssp             ------------------------------------SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE
T ss_pred             ------------------------------------EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee
Confidence                                                111 4567899999999999999999999999999543  2222


Q ss_pred             eeecCC---CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc-------eecc----cCCCcceeEEEEecCCCee
Q psy13076        169 NEFHPI---GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS-------VGEI----SGQSKPINSCDFKPSRPFR  234 (423)
Q Consensus       169 ~~~~~~---~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~~  234 (423)
                      .. +..   ...+.+++|||||+++++++.+.  ...+|....+..       +..+    .+|...|.+++|+|++   
T Consensus       121 l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG--tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---  194 (588)
T 2j04_A          121 LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG--ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---  194 (588)
T ss_dssp             CC-CSSCSTTTCEEEEEECSSSSCEEEEETTS--EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---
T ss_pred             cc-CCCccccccEEEEEEcCCCCEEEEEcCCC--EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---
Confidence            12 111   23599999999999999987654  356888776642       3444    5677899999999987   


Q ss_pred             EEEEeCCCeEEEEcCCCceee---eec-cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeE
Q psy13076        235 IITGSEDNTIAVFEGPPFKFK---MTK-QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY  310 (423)
Q Consensus       235 ~~s~s~d~~i~~~~~~~~~~~---~~~-~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~  310 (423)
                      +++++.|+++++|+.......   .++ ..|...|.+++|+  |+.+|+++ ++.|++||..+++.... .. +|...+.
T Consensus       195 Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~-~~-gh~~~V~  269 (588)
T 2j04_A          195 LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL-KT-GSLENFH  269 (588)
T ss_dssp             EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-EC-SCCSCCC
T ss_pred             EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-Ec-CCCceEE
Confidence            778899999999997654421   234 3677889999999  68999887 79999999987766322 21 5899999


Q ss_pred             EEEE--CCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEe
Q psy13076        311 AVAW--KPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI  388 (423)
Q Consensus       311 ~l~~--~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~  388 (423)
                      +++|  +|+++.|++++.||+ ++|....                 +...+++..+++  .++.+++|+.....  ...+
T Consensus       270 ~va~~~s~d~~~La~a~edG~-klw~~d~-----------------~~~spd~~l~a~--~d~~v~lW~~~g~~--l~~~  327 (588)
T 2j04_A          270 IIPLNHEKESTILLMSNKTSY-KVLLEDE-----------------LHVTADNIIAPY--LEKKFKKWSTIWNE--FNNY  327 (588)
T ss_dssp             EEEETTCSSCEEEEECSSCEE-EEEESSS-----------------EEEECCCSSHHH--HHHHHHHTTTTTTS--SSSS
T ss_pred             EEEeeeCCCCCEEEEEcCCCC-EEEeecc-----------------EEECCCceEEEE--cCCEEEEEECCCCc--eeee
Confidence            9999  999999999999999 9999872                 223445554444  38899999875443  2334


Q ss_pred             ccCCCceeEEEecCCCCeEEEecC
Q psy13076        389 KGHNKPITALALSPDRGTVFTGSH  412 (423)
Q Consensus       389 ~~h~~~v~~i~~sp~~~~l~s~s~  412 (423)
                      .+ ...|.+++|||||+.+|+++.
T Consensus       328 ~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          328 ET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             CC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             cc-ceEEEEEEECCCCCEEEEEEe
Confidence            44 677999999999999998873

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2e-34  Score=267.16  Aligned_cols=293  Identities=17%  Similarity=0.187  Sum_probs=221.1

Q ss_pred             CCCCceeecccccCceeEEEEeCC---CCeEEEecCCCceEEeecCC-cceeecccCCCCCCceEEeeCCCCCeEEEecC
Q psy13076         35 NPSTPIRVIKGHNKPITALALSPD---RGTVFTGSHDGFITRWNAKT-EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG  110 (423)
Q Consensus        35 ~~~~~~~~~~gh~~~V~~l~~~~~---~~~l~sg~~D~~i~vW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (423)
                      .+.+++..+++|.++|++++|+|+   +++|++|+.||.|++||+++ +...                            
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~----------------------------   78 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI----------------------------   78 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE----------------------------
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee----------------------------
Confidence            466778899999999999999999   59999999999999999975 2211                            


Q ss_pred             CeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEE--CCCCC
Q psy13076        111 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW--SPDNQ  188 (423)
Q Consensus       111 ~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~--s~~~~  188 (423)
                                   ...+.+|...|++++|+|++++|++++.|+.|++||+.+.+...   ...+..+|.+++|  +|++ 
T Consensus        79 -------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~-  141 (368)
T 3mmy_A           79 -------------PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ---IAQHDAPVKTIHWIKAPNY-  141 (368)
T ss_dssp             -------------EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECSSCEEEEEEEECSSC-
T ss_pred             -------------EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee---eccccCceEEEEEEeCCCC-
Confidence                         12345788999999999999999999999999999998765432   2223455555555  3333 


Q ss_pred             eEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEE
Q psy13076        189 RMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAV  268 (423)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l  268 (423)
                                                                 . .+++++.|+.|++|+....+.......+. .+.++
T Consensus       142 -------------------------------------------~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~  176 (368)
T 3mmy_A          142 -------------------------------------------S-CVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCA  176 (368)
T ss_dssp             -------------------------------------------E-EEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEE
T ss_pred             -------------------------------------------C-EEEEccCCCcEEEEECCCCcEEEEEecCC-CceEE
Confidence                                                       2 36788899999999987665544444443 45555


Q ss_pred             EECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCe----EEEEeCCCcEEEEecCCc---cee
Q psy13076        269 RYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQ----LLTASGDKTCKLWDIETK---SAV  341 (423)
Q Consensus       269 ~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~----l~s~s~d~~i~iwd~~~~---~~i  341 (423)
                      .+.  +..+++++.++.+.+|+..............+...+.++++.++...    +++++.|+.|++||+...   ..+
T Consensus       177 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  254 (368)
T 3mmy_A          177 DVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN  254 (368)
T ss_dssp             EEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred             Eec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence            554  45888999999999999987654333322334455667777666555    999999999999999876   334


Q ss_pred             eeeeeCcee-----------EeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe
Q psy13076        342 SEFLMGNQV-----------EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG  410 (423)
Q Consensus       342 ~~~~~~~~~-----------~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~  410 (423)
                      ..+......           ....+.+.+++.+|++++.||.|++||+.+. ..+..+.+|..+|++++|+|++++|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~  333 (368)
T 3mmy_A          255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQLDQPISACCFNHNGNIFAYA  333 (368)
T ss_dssp             EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred             eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCCCCCceEEEECCCCCeEEEE
Confidence            444322211           2445666779999999999999999999875 4567889999999999999999999999


Q ss_pred             cCCCcEEEee
Q psy13076        411 SHDGFITRWN  420 (423)
Q Consensus       411 s~D~~i~~W~  420 (423)
                      |.|+..+.|+
T Consensus       334 s~d~~~~~~~  343 (368)
T 3mmy_A          334 SSYDWSKGHE  343 (368)
T ss_dssp             ECCCSTTCGG
T ss_pred             eccccccccc
Confidence            9988665554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-34  Score=268.38  Aligned_cols=259  Identities=19%  Similarity=0.281  Sum_probs=201.8

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccC-CCCceeecccccCceeEEEEeCC--CCeEEEecCCCceEEeecCCcceeecc
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNN-PSTPIRVIKGHNKPITALALSPD--RGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~~~gh~~~V~~l~~~~~--~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      ++++++||++||+++.||.|++||+.. ..+++..+.+|.++|.+++|+++  +++|++|+.|++|++||+++++..   
T Consensus        16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---   92 (379)
T 3jrp_A           16 DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS---   92 (379)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE---
T ss_pred             EEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee---
Confidence            455667999999999999999999973 23456788999999999999987  899999999999999998765311   


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCC
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~  163 (423)
                                                           ....+.+|...|.+++|+|+  +.++++++.|+.|++||+.+.
T Consensus        93 -------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           93 -------------------------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             -------------------------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             -------------------------------------EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence                                                 11134568889999999999  999999999999999999876


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT  243 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~  243 (423)
                      .......+..+..+|.+++|+|........                               ....+++. .+++++.|+.
T Consensus       136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------------------------~~~~~~~~-~l~~~~~dg~  183 (379)
T 3jrp_A          136 GTTSPIIIDAHAIGVNSASWAPATIEEDGE-------------------------------HNGTKESR-KFVTGGADNL  183 (379)
T ss_dssp             SCCCEEEEECCTTCEEEEEECCCC-----------------------------------------CTTC-EEEEEETTSC
T ss_pred             CceeeEEecCCCCceEEEEEcCcccccccc-------------------------------ccCCCCCC-EEEEEeCCCe
Confidence            544334445566788888888864321110                               00122333 4889999999


Q ss_pred             EEEEcCCCc----eeeeeccccccCeEEEEECCC---CCEEEEEEecCeEEEEECCCccc---eecccccccCCCeEEEE
Q psy13076        244 IAVFEGPPF----KFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASADL---VSELGNPAHKGGVYAVA  313 (423)
Q Consensus       244 i~~~~~~~~----~~~~~~~~~~~~i~~l~~s~~---g~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~i~~l~  313 (423)
                      |++|+....    ........|...|.+++|+|+   +++|++++.||.|++||..++..   ...+....|...+.+++
T Consensus       184 i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  263 (379)
T 3jrp_A          184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS  263 (379)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred             EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE
Confidence            999986432    344566788999999999999   89999999999999999987642   22222235788999999


Q ss_pred             ECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076        314 WKPDGTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       314 ~~~~~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      |+|++++|++++.|+.|++||+....
T Consensus       264 ~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          264 WSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             ECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             EcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            99999999999999999999998544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-33  Score=260.33  Aligned_cols=256  Identities=20%  Similarity=0.195  Sum_probs=199.5

Q ss_pred             cccccCCcceEEEEEE-----CC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        124 SDIYTEHSCAVNVAKY-----SP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       124 ~~~~~~h~~~i~~~~~-----sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                      ...+.+|...|++++|     +| ++++|+||+.|++|++||+.+.+....                             
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-----------------------------   64 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----------------------------   64 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----------------------------
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----------------------------
Confidence            4567899999999999     77 999999999999999999865321000                             


Q ss_pred             ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEE
Q psy13076        198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF  277 (423)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  277 (423)
                                .+.....+.+|...|.+++|+|++.+ +++++.|++|++||....+....+..|...|.+++|+|++++|
T Consensus        65 ----------~~~~~~~l~~h~~~V~~~~~~~~~~~-l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l  133 (343)
T 2xzm_R           65 ----------FGIPHKALTGHNHFVSDLALSQENCF-AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI  133 (343)
T ss_dssp             ----------SEEEEEEECCCSSCEEEEEECSSTTE-EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEE
T ss_pred             ----------cccccchhccCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEE
Confidence                      00011234456677888888887765 7899999999999998877777888999999999999999999


Q ss_pred             EEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC----------CeEEEEeCCCcEEEEecCCcceeeeeeeC
Q psy13076        278 ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG----------TQLLTASGDKTCKLWDIETKSAVSEFLMG  347 (423)
Q Consensus       278 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~----------~~l~s~s~d~~i~iwd~~~~~~i~~~~~~  347 (423)
                      ++++.|+.|++||..............|...|.+++|+|++          ++|++++.|++|++||.. .+....+. .
T Consensus       134 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~-~  211 (343)
T 2xzm_R          134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFK-A  211 (343)
T ss_dssp             EEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEE-C
T ss_pred             EEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEc-C
Confidence            99999999999998744333222234688899999999987          789999999999999953 44444433 2


Q ss_pred             ceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        348 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       348 ~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      +......+.+.++|.+|++++.|+.|++||+.....+...+ .|...|++++|+|++++|+ ++.|+.|++|++.+
T Consensus       212 h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~  285 (343)
T 2xzm_R          212 HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMT  285 (343)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSS
T ss_pred             ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCC
Confidence            33345566777899999999999999999996555444443 3456799999999998776 45688899999753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.4e-33  Score=267.56  Aligned_cols=279  Identities=22%  Similarity=0.400  Sum_probs=224.4

Q ss_pred             ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         39 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        39 ~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      +...++||.+.|.+ ++.+++++|++|+.||+|++||+++++...                                   
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~-----------------------------------  153 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR-----------------------------------  153 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE-----------------------------------
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE-----------------------------------
Confidence            45678999987643 244568899999999999999998764432                                   


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                             .+.+|...|.++.|+  +.++++++.|++|++||+.+++....  +..                         
T Consensus       154 -------~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~-------------------------  197 (445)
T 2ovr_B          154 -------TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT--LYG-------------------------  197 (445)
T ss_dssp             -------ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE--ECC-------------------------
T ss_pred             -------EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE--ECC-------------------------
Confidence                   345788899999997  56999999999999999977654321  222                         


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEE
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFA  278 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~  278 (423)
                                         |...|.++.+++.   .+++++.|+.|++|+....+.......|...+.++++  ++++++
T Consensus       198 -------------------h~~~v~~~~~~~~---~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~  253 (445)
T 2ovr_B          198 -------------------HTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVV  253 (445)
T ss_dssp             -------------------CSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEE
T ss_pred             -------------------CCCcEEEEEecCC---EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEE
Confidence                               2334444444322   3888999999999998887777778889999999999  788999


Q ss_pred             EEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEE
Q psy13076        279 SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL  358 (423)
Q Consensus       279 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~  358 (423)
                      +|+.||.|++||.++++.+..+.  .|...|.+++|  ++++|++++.|++|++||+++++.+..+.....   ......
T Consensus       254 ~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~v~~~~  326 (445)
T 2ovr_B          254 SGAYDFMVKVWDPETETCLHTLQ--GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS---LTSGME  326 (445)
T ss_dssp             EEETTSCEEEEEGGGTEEEEEEC--CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS---CEEEEE
T ss_pred             EEcCCCEEEEEECCCCcEeEEec--CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc---cEEEEE
Confidence            99999999999999988877764  68899999999  788999999999999999999988877643221   122344


Q ss_pred             ecCcEEEEEeCCCcEEEEecCCCCCceEEecc---CCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG---HNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       359 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~---h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      +++..+++++.+|.+++||+.+.. ++..+.+   |..+|++++|+  +++|++|+.||.|++||+.+
T Consensus       327 ~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~  391 (445)
T 2ovr_B          327 LKDNILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT  391 (445)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             EeCCEEEEEeCCCeEEEEECCCCc-EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC
Confidence            588999999999999999998754 4566665   89999999996  57999999999999999764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.5e-34  Score=265.81  Aligned_cols=246  Identities=11%  Similarity=0.053  Sum_probs=182.6

Q ss_pred             ceeeEEEEeCCEEEEEe-----------ccceEEEEeccCCCCceee--------cccccCceeEEEEeCCCCeEE--Ee
Q psy13076          7 DQQVSCLWQGDYLLTVS-----------LSGFISYLDVNNPSTPIRV--------IKGHNKPITALALSPDRGTVF--TG   65 (423)
Q Consensus         7 ~~~~~~~~~~~~~~~~~-----------~dg~i~~~d~~~~~~~~~~--------~~gh~~~V~~l~~~~~~~~l~--sg   65 (423)
                      +.+.++.++++.++++.           .|+.+|+|++.........        ..++...+.+++|+|||++|+  |+
T Consensus        74 ~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~  153 (365)
T 4h5i_A           74 DSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASS  153 (365)
T ss_dssp             CCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES
T ss_pred             CceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC
Confidence            44567788999888764           5788999998754433221        124556689999999999875  56


Q ss_pred             cCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCE
Q psy13076         66 SHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFY  145 (423)
Q Consensus        66 ~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~  145 (423)
                      +.|++||+||+++++....+                                           .|...|.+++|+|||++
T Consensus       154 ~~d~~i~iwd~~~~~~~~~~-------------------------------------------~~~~~V~~v~fspdg~~  190 (365)
T 4h5i_A          154 KVPAIMRIIDPSDLTEKFEI-------------------------------------------ETRGEVKDLHFSTDGKV  190 (365)
T ss_dssp             CSSCEEEEEETTTTEEEEEE-------------------------------------------ECSSCCCEEEECTTSSE
T ss_pred             CCCCEEEEeECCCCcEEEEe-------------------------------------------CCCCceEEEEEccCCce
Confidence            68999999999886543322                                           25567899999999999


Q ss_pred             EEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEE
Q psy13076        146 IASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSC  225 (423)
Q Consensus       146 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  225 (423)
                      +++++.+ .+++|+..+++.........+...|.+++|+|+++.+++++.+.....                        
T Consensus       191 l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~------------------------  245 (365)
T 4h5i_A          191 VAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI------------------------  245 (365)
T ss_dssp             EEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE------------------------
T ss_pred             EEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee------------------------
Confidence            9999854 566777666655444334445566777888887777666543321111                        


Q ss_pred             EEecCCCeeEEEEeCCCeEEEEcCCCce----eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc
Q psy13076        226 DFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG  301 (423)
Q Consensus       226 ~~~~~~~~~~~s~s~d~~i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~  301 (423)
                                       .++.|+.....    .......|...|++++|+|+|++||+|+.|+.|++||.++++.+.++.
T Consensus       246 -----------------~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~  308 (365)
T 4h5i_A          246 -----------------VLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK  308 (365)
T ss_dssp             -----------------EEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET
T ss_pred             -----------------EEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec
Confidence                             23444432221    123455778889999999999999999999999999999998877653


Q ss_pred             ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        302 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       302 ~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                       .+|...|++++|+|||++|+|+|.|++|||||+...
T Consensus       309 -~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          309 -QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             -TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             -CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence             379999999999999999999999999999999654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.1e-34  Score=286.12  Aligned_cols=217  Identities=26%  Similarity=0.359  Sum_probs=172.2

Q ss_pred             eeecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         40 IRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      ...+++|.++|++|+|+|++ ++|+|||.|++|++||+.+....                                    
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------------------------  418 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------------------------------------  418 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------------------------------------
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------------------------------------
Confidence            34688999999999999875 68999999999999998753110                                    


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                       .+.....+.+|...|.+++|+|++++|++|+.|++|++||+.++....  .+..+..+|.+++|+|++           
T Consensus       419 -~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~--~~~~h~~~v~~~~~s~~~-----------  484 (694)
T 3dm0_A          419 -YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR--RFVGHTKDVLSVAFSLDN-----------  484 (694)
T ss_dssp             -SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEECTTS-----------
T ss_pred             -cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee--EEeCCCCCEEEEEEeCCC-----------
Confidence             011223467899999999999999999999999999999997765432  233344555555555544           


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee---eeccccccCeEEEEECCCC-
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK---MTKQEHSRFVQAVRYSPSG-  274 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~---~~~~~~~~~i~~l~~s~~g-  274 (423)
                                                       .. +++++.|++|++|+.......   .....|...|.+++|+|++ 
T Consensus       485 ---------------------------------~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  530 (694)
T 3dm0_A          485 ---------------------------------RQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL  530 (694)
T ss_dssp             ---------------------------------SC-EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred             ---------------------------------CE-EEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence                                             32 678889999999986543221   2234688889999999987 


Q ss_pred             -CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceee
Q psy13076        275 -SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVS  342 (423)
Q Consensus       275 -~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~  342 (423)
                       .++++++.|+.|++||+++++....+.  +|.+.|.+++|+|++++|++++.|++|++||+.+++.+.
T Consensus       531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~--~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~  597 (694)
T 3dm0_A          531 QPTIVSASWDKTVKVWNLSNCKLRSTLA--GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY  597 (694)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred             cceEEEEeCCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence             589999999999999999888777663  689999999999999999999999999999998876543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-34  Score=273.19  Aligned_cols=305  Identities=13%  Similarity=0.116  Sum_probs=231.4

Q ss_pred             eeeEEEE-eCCEEEEEeccceEEEEeccC---CC--CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecC---C
Q psy13076          8 QQVSCLW-QGDYLLTVSLSGFISYLDVNN---PS--TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK---T   78 (423)
Q Consensus         8 ~~~~~~~-~~~~~~~~~~dg~i~~~d~~~---~~--~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~---~   78 (423)
                      .++++++ ||.+||+|+.||.|++||+..   ..  .+...+ +|.++|.+++|+|++++|++|+.|++|++||++   +
T Consensus        67 ~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~  145 (437)
T 3gre_A           67 TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQ  145 (437)
T ss_dssp             EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEE
T ss_pred             EEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccC
Confidence            3566778 899999999999999999864   22  112222 599999999999999999999999999999995   4


Q ss_pred             cceeecccC--------C---CCCCceEE--eeCCCCCeEEEe-cCCeEEEEecCCCcccccccC--CcceEEEEEECCC
Q psy13076         79 EYIFATLPR--------T---QRGQPIVL--GGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTE--HSCAVNVAKYSPS  142 (423)
Q Consensus        79 ~~~~~~~~~--------~---~~~~~~~~--~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~--h~~~i~~~~~sp~  142 (423)
                      ++....+..        .   .......+  ..++++..++.. .+..+++|++++++....+.+  |...|++++|+|+
T Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~  225 (437)
T 3gre_A          146 ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE  225 (437)
T ss_dssp             TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT
T ss_pred             CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC
Confidence            433332211        0   11222222  256777777665 467999999999999998988  8999999999999


Q ss_pred             CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC----CCCeEEEEEcCCceeeEEEeecCCcceecccCC
Q psy13076        143 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP----DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ  218 (423)
Q Consensus       143 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (423)
                      +++|++|+.|++|++||+++.+....... .+..+|.+++|+|    ++..+++++  .+....+|+..++..+..+..+
T Consensus       226 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~  302 (437)
T 3gre_A          226 CCVLILGTTRGIIDIWDIRFNVLIRSWSF-GDHAPITHVEVCQFYGKNSVIVVGGS--SKTFLTIWNFVKGHCQYAFINS  302 (437)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEEEBC-TTCEEEEEEEECTTTCTTEEEEEEES--TTEEEEEEETTTTEEEEEEESS
T ss_pred             CCEEEEEcCCCeEEEEEcCCccEEEEEec-CCCCceEEEEeccccCCCccEEEEEc--CCCcEEEEEcCCCcEEEEEEcC
Confidence            99999999999999999988765543332 3456899997765    455555443  3455678888888888888888


Q ss_pred             CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcccee
Q psy13076        219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS  298 (423)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~  298 (423)
                      ...+..+.|+|.+...     .+.            ......|...|++++|+ ++++|++|+.||.|++||+.+++...
T Consensus       303 ~~~~~~~~~~~~~~~l-----~~~------------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          303 DEQPSMEHFLPIEKGL-----EEL------------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             SSCCCGGGGSCBCSSG-----GGC------------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             CCCCccceeccccccc-----ccc------------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence            8888877788765431     000            01112377889999999 78899999999999999999888765


Q ss_pred             ccccc-----------------------------------ccCCCeEEEEECCC--CCeEEEEeCCCcEEEEe
Q psy13076        299 ELGNP-----------------------------------AHKGGVYAVAWKPD--GTQLLTASGDKTCKLWD  334 (423)
Q Consensus       299 ~~~~~-----------------------------------~~~~~i~~l~~~~~--~~~l~s~s~d~~i~iwd  334 (423)
                      .+...                                   .|...|.+++|+++  +.+|++|+.||.|+||+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            55321                                   28899999999998  78999999999999995

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.3e-33  Score=259.31  Aligned_cols=282  Identities=13%  Similarity=0.159  Sum_probs=213.5

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCC--CceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeec-CCcceeec
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPS--TPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNA-KTEYIFAT   84 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~-~~~~~~~~   84 (423)
                      .++++++|.+|++++.||.|++||+....  .+...+.+|.++|.+++|+|+++ +|++|+.||.|++||+ +++..   
T Consensus        16 ~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---   92 (342)
T 1yfq_A           16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF---   92 (342)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---
Confidence            45556699999999999999999997643  13456679999999999999999 9999999999999999 76432   


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccC--CcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE--HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~  162 (423)
                                                              ..+.+  |...|.+++|+| +.++++++.|+.|++||+.+
T Consensus        93 ----------------------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           93 ----------------------------------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             ----------------------------------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred             ----------------------------------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccc
Confidence                                                    12345  888999999999 99999999999999999864


Q ss_pred             CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076        163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                      .....          +. .                          .+..+..+. +...+.+++|+|+.   +++++.|+
T Consensus       132 ~~~~~----------~~-~--------------------------~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~  170 (342)
T 1yfq_A          132 YGDGV----------IA-V--------------------------KNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNS  170 (342)
T ss_dssp             HTTBC----------EE-E--------------------------EESCSSSSS-SCCCEEEEEECSSE---EEEEESTT
T ss_pred             ccccc----------cc-c--------------------------cCCeeeEEe-eCCceEEEEecCCc---EEEEeCCC
Confidence            11000          00 0                          000001111 33456666676654   77888999


Q ss_pred             eEEEEcCCC-ce--eeeeccccccCeEEEEECC-CCCEEEEEEecCeEEEEECCCc------cceeccccc-------cc
Q psy13076        243 TIAVFEGPP-FK--FKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGASA------DLVSELGNP-------AH  305 (423)
Q Consensus       243 ~i~~~~~~~-~~--~~~~~~~~~~~i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~------~~~~~~~~~-------~~  305 (423)
                      .|++|+... ..  .......+...+.+++|+| +++++++++.||.|++|+....      +....+...       .|
T Consensus       171 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (342)
T 1yfq_A          171 QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL  250 (342)
T ss_dssp             EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred             eEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccccc
Confidence            999999776 32  3334456778899999999 9999999999999999999776      444444321       12


Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCc-EEEEe
Q psy13076        306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGF-ISYLD  377 (423)
Q Consensus       306 ~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~-i~~~~  377 (423)
                      ...|.+++|+|++++|++++.|+.|++||+.+++.+..+...+......+.  ++|.+|++++.||. .+.+.
T Consensus       251 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             ceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence            448999999999999999999999999999999888776543123333444  89999999999998 54444

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-33  Score=267.60  Aligned_cols=325  Identities=13%  Similarity=0.075  Sum_probs=218.2

Q ss_pred             cCceeEEEEeCCCCeEEEecCCCceEEeecCCcc---eeecccCCCC-CCceEEe-eCCCCCeEEEecC----------C
Q psy13076         47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEY---IFATLPRTQR-GQPIVLG-GDPKGKNFLYTNG----------N  111 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~---~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~----------~  111 (423)
                      ..|+.+++|+|+|++|+++ .++.|++||+++++   .+........ ....... ....+..+.....          .
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4689999999999966655 57899999999987   5444432111 0000000 0000000000000          0


Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcC--CCceeEEeeecCCCCCeeEEEECCCCC
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTV--NKEHILKNEFHPIGGPIKDIAWSPDNQ  188 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~v~~v~~s~~~~  188 (423)
                      .+.-.............+|.+.|++++|+|++++| ++++.|++|++||+.  +++.......+.+...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence            00000000011112345788899999999999996 899999999999997  555443332223345566666666655


Q ss_pred             eEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee----eccccccC
Q psy13076        189 RMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM----TKQEHSRF  264 (423)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~----~~~~~~~~  264 (423)
                      .                                             +++++.++.+++|+........    .+..|...
T Consensus       163 ~---------------------------------------------l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~  197 (450)
T 2vdu_B          163 T---------------------------------------------VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM  197 (450)
T ss_dssp             E---------------------------------------------EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSC
T ss_pred             E---------------------------------------------EEEEeCCCcEEEEecCCcccccccceeeecccCc
Confidence            4                                             4556677788888765443322    55678889


Q ss_pred             eEEEEECCC---CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCccee
Q psy13076        265 VQAVRYSPS---GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAV  341 (423)
Q Consensus       265 i~~l~~s~~---g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i  341 (423)
                      |.+++|+|+   +++|++|+.|+.|++||+.+++.+..+. .+|...|.+++|+ ++++|++++.|++|++||+.+++++
T Consensus       198 v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~  275 (450)
T 2vdu_B          198 LTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL-FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL  275 (450)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC-CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEE
T ss_pred             eEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee-cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe
Confidence            999999999   9999999999999999999888776533 3688999999999 9999999999999999999999887


Q ss_pred             eeeeeCc------------------------eeEeeEEEEEecCcEEEEEe-CCCcEEEEec--CCCC--CceEEeccCC
Q psy13076        342 SEFLMGN------------------------QVEDQQVSCLWQGDYLLTVS-LSGFISYLDV--NNPS--TPIRVIKGHN  392 (423)
Q Consensus       342 ~~~~~~~------------------------~~~~~~~~~~~~g~~l~~~~-~~~~i~~~~~--~~~~--~~~~~~~~h~  392 (423)
                      ..+....                        ......+...+++.++++++ .++.|++|++  ....  ..+..+.+| 
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-  354 (450)
T 2vdu_B          276 STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-  354 (450)
T ss_dssp             EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-
T ss_pred             eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-
Confidence            7765321                        12233455667899999988 8999999999  3321  345567788 


Q ss_pred             CceeEEEecCCCCeEEEe-cC------CCcEEEeeC
Q psy13076        393 KPITALALSPDRGTVFTG-SH------DGFITRWNA  421 (423)
Q Consensus       393 ~~v~~i~~sp~~~~l~s~-s~------D~~i~~W~~  421 (423)
                      ..|++++|+|++ ++++. +.      +..|++|.+
T Consensus       355 ~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          355 YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEE
T ss_pred             CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEE
Confidence            889999999964 55444 43      566888864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=264.79  Aligned_cols=332  Identities=16%  Similarity=0.183  Sum_probs=219.3

Q ss_pred             eeEEEE-eCCEEEEEeccceEEEEeccCCCCceeec-------------ccccCceeEEEEeC-CCCeEEEecCCCceEE
Q psy13076          9 QVSCLW-QGDYLLTVSLSGFISYLDVNNPSTPIRVI-------------KGHNKPITALALSP-DRGTVFTGSHDGFITR   73 (423)
Q Consensus         9 ~~~~~~-~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-------------~gh~~~V~~l~~~~-~~~~l~sg~~D~~i~v   73 (423)
                      ++++++ +|++||+++.||.|++||+.+... ...+             .+|.++|.+++|+| ++.+|++++.|+.|++
T Consensus        48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  126 (408)
T 4a11_B           48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSR-QSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV  126 (408)
T ss_dssp             EEEECTTTCCEEEEEETTSCEEEEECCCCSS-SSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEE
T ss_pred             EEEEecCCCCEEEEEcCCCeEEEEECCCCcc-cceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEE
Confidence            456666 899999999999999999986443 3233             36999999999999 7789999999999999


Q ss_pred             eecCCcceeecccCCCCCCceEEeeCC---CCCeEEE-ecCCeEEEEecCCCcccccccCCcceEEEEEECCCCC-EEEE
Q psy13076         74 WNAKTEYIFATLPRTQRGQPIVLGGDP---KGKNFLY-TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF-YIAS  148 (423)
Q Consensus        74 W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s  148 (423)
                      ||+.+++....+..  ......+.+.+   ++..++. ..+..+.+|+++++.....+.+|...|.+++|+|++. ++++
T Consensus       127 wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~  204 (408)
T 4a11_B          127 WDTNTLQTADVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILAT  204 (408)
T ss_dssp             EETTTTEEEEEEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEE
T ss_pred             eeCCCCccceeccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEE
Confidence            99999877666543  22333444444   3345555 4567899999999999999999999999999999998 5899


Q ss_pred             EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEe
Q psy13076        149 GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFK  228 (423)
Q Consensus       149 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  228 (423)
                      ++.|+.|++||+.+...... .+.....           .                  ...........+...|.+++|+
T Consensus       205 ~~~dg~i~i~d~~~~~~~~~-~~~~~~~-----------~------------------~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          205 ASADSRVKLWDVRRASGCLI-TLDQHNG-----------K------------------KSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             EETTSCEEEEETTCSSCCSE-ECCTTTT-----------C------------------SCCCTTTSSCSCSSCEEEEEEC
T ss_pred             EcCCCcEEEEECCCCCcccc-ccccccc-----------c------------------cceeeccccccccCceeEEEEc
Confidence            99999999999976542211 0100000           0                  0001112334677788899999


Q ss_pred             cCCCeeEEEEeCCCeEEEEcCCCceeeeeccc-----cccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc
Q psy13076        229 PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE-----HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP  303 (423)
Q Consensus       229 ~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~-----~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  303 (423)
                      |++.+ +++++.|+.+++|+....+.......     ....+........+..+++++.|+.|++||..+++.+..+.  
T Consensus       255 ~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--  331 (408)
T 4a11_B          255 SDGLH-LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK--  331 (408)
T ss_dssp             TTSSE-EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC--
T ss_pred             CCCCE-EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec--
Confidence            98775 88899999999999765543322211     11122222333445677778899999999999999887774  


Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecC
Q psy13076        304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVN  379 (423)
Q Consensus       304 ~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~  379 (423)
                      +|...|.+++|+|++++|++++.|+.|++||+.+++.+.........  ..+.. ...........++.+++|+..
T Consensus       332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNP-AFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred             cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--ccccc-ccceeecccCccCceeecCCc
Confidence            68899999999999999999999999999999998776543221111  11111 123334456677888888653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.7e-34  Score=262.24  Aligned_cols=312  Identities=15%  Similarity=0.202  Sum_probs=210.2

Q ss_pred             EeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecC
Q psy13076         31 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG  110 (423)
Q Consensus        31 ~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (423)
                      |++.+ .+++..+++|.++|.+++|+|++++|++|+.|+ +++||+++.......                         
T Consensus         4 ~s~~~-~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~-------------------------   56 (355)
T 3vu4_A            4 GSMIT-RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ-------------------------   56 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE-------------------------
T ss_pred             ccccc-cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee-------------------------
Confidence            44443 456667799999999999999999999998775 889998765432111                         


Q ss_pred             CeEEEEecCCCcccccccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCe
Q psy13076        111 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR  189 (423)
Q Consensus       111 ~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~  189 (423)
                                         +...+..+.+.++++++ ++++.|++|++||..+++.+....   ...+|.+++|+++.  
T Consensus        57 -------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~--  112 (355)
T 3vu4_A           57 -------------------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREF--  112 (355)
T ss_dssp             -------------------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSE--
T ss_pred             -------------------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCE--
Confidence                               00124566788877777 567888999999998887665443   34689999999874  


Q ss_pred             EEEEEcCCceeeEEEeecCC-cceecccCCCcceeEEEEecCCCeeEEE-EeCCCeEEEEcCCCce--------------
Q psy13076        190 MVVVGEGRERFGHVFMSETG-TSVGEISGQSKPINSCDFKPSRPFRIIT-GSEDNTIAVFEGPPFK--------------  253 (423)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s-~s~d~~i~~~~~~~~~--------------  253 (423)
                      ++++.+   ....+|+.... +.+..+..   +...+++++  .+.+++ ++.++.|++||.....              
T Consensus       113 ~~~~~~---~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~  184 (355)
T 3vu4_A          113 IVVSYG---DVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI  184 (355)
T ss_dssp             EEEEET---TEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC----------------
T ss_pred             EEEEEc---CEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence            344432   23567777666 55544444   455566777  343333 6899999999987533              


Q ss_pred             --eeeeccccccCeEEEEECCCCCEEEEEEecCe-EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076        254 --FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK-VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC  330 (423)
Q Consensus       254 --~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i  330 (423)
                        ....+..|...|++++|+|+|++|++|+.||+ |++||.++++.+..+....|...|.+++|+|++++|++++.|++|
T Consensus       185 ~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v  264 (355)
T 3vu4_A          185 LGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTL  264 (355)
T ss_dssp             --CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEE
T ss_pred             CcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEE
Confidence              14567789999999999999999999999998 999999999988877532388999999999999999999999999


Q ss_pred             EEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe
Q psy13076        331 KLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG  410 (423)
Q Consensus       331 ~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~  410 (423)
                      ++||++.............       ..+  .+     .+.   .|.    .........+..+...++|+||++.|+++
T Consensus       265 ~iw~~~~~~~~~~~~~~~~-------~~~--~~-----~~~---~~~----~~~~~~~~~~~~~~~~~a~~~d~~~l~~~  323 (355)
T 3vu4_A          265 HVFEIFNDQDNKRHALKGW-------INM--KY-----FQS---EWS----LCNFKLSVDKHVRGCKIAWISESSLVVVW  323 (355)
T ss_dssp             EEEESSCCSCCCSEETTTT-------EEC--CC-----CCC---SSC----SEEEECCCCTTCCCCEEEESSSSEEEEEE
T ss_pred             EEEEccCCCCcccccccce-------eec--cc-----ccc---ccc----eeEEEeccCCCCCceEEEEeCCCCEEEEE
Confidence            9999987542211110000       000  00     000   000    00001112233456779999999999999


Q ss_pred             cCCCcEEEeeCC
Q psy13076        411 SHDGFITRWNAK  422 (423)
Q Consensus       411 s~D~~i~~W~~~  422 (423)
                      +.||.+++|++.
T Consensus       324 ~~dg~~~~~~~~  335 (355)
T 3vu4_A          324 PHTRMIETFKVV  335 (355)
T ss_dssp             TTTTEEEEEEEE
T ss_pred             eCCCeEEEEEEE
Confidence            999999999863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.3e-34  Score=260.93  Aligned_cols=267  Identities=17%  Similarity=0.281  Sum_probs=201.1

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCC---CceeecccccCceeEEEEeC--CCCeEEEecCCCceEEeecCCcceee
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPS---TPIRVIKGHNKPITALALSP--DRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~---~~~~~~~gh~~~V~~l~~~~--~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      +++++++|++||+++.||.|++||+.+..   ++...+++|.++|.+++|+|  ++++|++|+.|++|++||++++....
T Consensus        16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~   95 (351)
T 3f3f_A           16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC   95 (351)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT
T ss_pred             EEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc
Confidence            45555699999999999999999997644   35567789999999999999  58999999999999999998653210


Q ss_pred             cccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcC
Q psy13076         84 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTV  161 (423)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~  161 (423)
                      ..                                 ...+....+.+|...|.+++|+|+  +.++++++.|+.|++||+.
T Consensus        96 ~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~  142 (351)
T 3f3f_A           96 SG---------------------------------RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL  142 (351)
T ss_dssp             SS---------------------------------CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred             cc---------------------------------cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence            00                                 000122345679999999999999  9999999999999999998


Q ss_pred             CCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecC--CCeeEEEEe
Q psy13076        162 NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS--RPFRIITGS  239 (423)
Q Consensus       162 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~s~s  239 (423)
                      +.+........   ..+..+.+                              ....+...+.++.|+|.  ....+++++
T Consensus       143 ~~~~~~~~~~~---~~~~~~~~------------------------------~~~~~~~~~~~~~~~p~~~~~~~l~~~~  189 (351)
T 3f3f_A          143 EPSDLRSWTLT---SEMKVLSI------------------------------PPANHLQSDFCLSWCPSRFSPEKLAVSA  189 (351)
T ss_dssp             STTCTTCCEEE---EEEESCSC------------------------------CCSSCSCCCEEEEECCCSSSCCEEEEEE
T ss_pred             ChHHhcccccc---cccccccc------------------------------ccCCcccceeEEEeccCCCCCcEEEEec
Confidence            76532111100   00000000                              11234456777888876  234588888


Q ss_pred             CCCeEEEEcCCCcee--eeeccccccCeEEEEECCCC----CEEEEEEecCeEEEEECCCc-------------------
Q psy13076        240 EDNTIAVFEGPPFKF--KMTKQEHSRFVQAVRYSPSG----SHFASAGFDGKVFLYDGASA-------------------  294 (423)
Q Consensus       240 ~d~~i~~~~~~~~~~--~~~~~~~~~~i~~l~~s~~g----~~l~s~s~dg~i~vwd~~~~-------------------  294 (423)
                      .++.+.+|+......  ......|...|++++|+|++    ++|++|+.||.|++||.+++                   
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  269 (351)
T 3f3f_A          190 LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS  269 (351)
T ss_dssp             TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred             CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCC
Confidence            999887776554443  55667889999999999998    89999999999999998764                   


Q ss_pred             ---------------------------cceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeee
Q psy13076        295 ---------------------------DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE  343 (423)
Q Consensus       295 ---------------------------~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~  343 (423)
                                                 +.+..+  .+|...|.+++|+|++++|++++.|+.|++||+.+++.+..
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH--DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             ---------------------CCSEEEEEEEEE--CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             cccccccccccccccceeeeecccccccEEEEE--ecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence                                       222223  35889999999999999999999999999999998765544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-34  Score=277.68  Aligned_cols=271  Identities=14%  Similarity=0.158  Sum_probs=198.2

Q ss_pred             CCEEEEEeccceEEEEeccCCC----------CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPS----------TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~----------~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      +.+||+++.||.|++||+..+.          .+..++.+|.++|.+++|+++ ..|++|+.||+|++||++++..    
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~----  299 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV----  299 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS----
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC----
Confidence            5799999999999999997542          234578899999999999986 4899999999999999975311    


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEE--EECCCC-CEEEEEccCCcEEEEEcCC
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVA--KYSPSG-FYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~--~~sp~~-~~l~s~~~d~~i~vwd~~~  162 (423)
                                                           ....+.+|...|+++  .|+|++ .+|||++.|++|+|||+++
T Consensus       300 -------------------------------------~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~  342 (524)
T 2j04_B          300 -------------------------------------PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD  342 (524)
T ss_dssp             -------------------------------------CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred             -------------------------------------ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence                                                 011346799999999  578888 8999999999999999987


Q ss_pred             CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076        163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                      .+.......+.....|.+++|+|+++.+++++.+  ....+|+...+..+..+.+|...|.+++|+|++++ +++|+.|+
T Consensus       343 ~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d--~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dg  419 (524)
T 2j04_B          343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA--SSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM-VLAGSADG  419 (524)
T ss_dssp             HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS--SEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB-CEEEETTT
T ss_pred             CCcccccccccccCcccceEeCCCcCeEEEeCCC--CcEEEEECcccccceeeecCCCceEEEEeCCCCCe-EEEEECCC
Confidence            6543322222222357899999999987765543  34678888777777778899999999999999986 88999999


Q ss_pred             eEEEEcCCCceeeeeccc-----cccCeEEEEECCCCCEEEEEEecCeEEEEECC-CccceecccccccCCCeEEEEECC
Q psy13076        243 TIAVFEGPPFKFKMTKQE-----HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA-SADLVSELGNPAHKGGVYAVAWKP  316 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~-----~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~i~~l~~~~  316 (423)
                      ++++|+.....+ .....     +...+..++|+|+|+.+. . .| ...+|+.. ++.....+  .+|...|.+++|+|
T Consensus       420 tv~lwd~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~-~~-~~~~~~~~~~g~~~~~l--~gh~~~V~~Vafsp  493 (524)
T 2j04_B          420 SLIITNAARRLL-HGIKNSSATQKSLRLWKWDYSIKDDKYR-I-DS-SYEVYPLTVNDVSKAKI--DAHGINITCTKWNE  493 (524)
T ss_dssp             EEECCBSCSSTT-TCC------CCCCEEEECBCCSSSCEEE-E-CC-CCCCCC---------------CCCSCCCEEECC
T ss_pred             EEEEEechHhhc-cccccCccceeeeEEEEeccCCCCCeEE-c-cC-CceecccccCCcceeee--cCCCceEEEEECCC
Confidence            999999643211 11110     112467899999998552 2 22 23333322 34444445  46889999999999


Q ss_pred             CCC---eEEEEeCCCcEEEEecCC
Q psy13076        317 DGT---QLLTASGDKTCKLWDIET  337 (423)
Q Consensus       317 ~~~---~l~s~s~d~~i~iwd~~~  337 (423)
                      +++   +|++|+.||+||||++..
T Consensus       494 ~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          494 TSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             STTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCCccHHHHhhccCceEEEEEccc
Confidence            964   999999999999999864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=252.78  Aligned_cols=272  Identities=9%  Similarity=0.045  Sum_probs=195.3

Q ss_pred             EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076         14 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP   93 (423)
Q Consensus        14 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~   93 (423)
                      +|+.++++|+.||.|++||+.+ .+.+..+.  .++|.++.|+|+   ++||+.|++|++|+....              
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~--------------  105 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKD-SKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ--------------  105 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESS-SSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTE--------------
T ss_pred             CCCCEEEEECCCCcEEEEECCC-CcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCc--------------
Confidence            5899999999999999999976 44555665  578889999998   999999999999998642              


Q ss_pred             eEEeeCCCCCeEEEecCCeEEEEecCCCcccccc-cCCcceEEEEEECC--CCCEEEEEccCCcEEEEEcCCCceeEEee
Q psy13076         94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHILKNE  170 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~h~~~i~~~~~sp--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  170 (423)
                                         +.+|+++++.....+ .+|...|.+++|+|  +++++++++.|++|++||+++++......
T Consensus       106 -------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~  166 (343)
T 3lrv_A          106 -------------------ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS  166 (343)
T ss_dssp             -------------------EEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC
T ss_pred             -------------------eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence                               334455555433333 37888999999999  99999999999999999998766532111


Q ss_pred             ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076        171 FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP  250 (423)
Q Consensus       171 ~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~  250 (423)
                       ..+..++.+++|+|++.                                             .+++|+.|+.|++||.+
T Consensus       167 -~~~~~~i~~~~~~pdg~---------------------------------------------~lasg~~dg~i~iwd~~  200 (343)
T 3lrv_A          167 -AKSDVEYSSGVLHKDSL---------------------------------------------LLALYSPDGILDVYNLS  200 (343)
T ss_dssp             -CCSSCCCCEEEECTTSC---------------------------------------------EEEEECTTSCEEEEESS
T ss_pred             -cCCCCceEEEEECCCCC---------------------------------------------EEEEEcCCCEEEEEECC
Confidence             11223455555555543                                             26778899999999987


Q ss_pred             Cceee-eeccc-cccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc-cccCCCe--EEEEECCCCCeEEEEe
Q psy13076        251 PFKFK-MTKQE-HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN-PAHKGGV--YAVAWKPDGTQLLTAS  325 (423)
Q Consensus       251 ~~~~~-~~~~~-~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~i--~~l~~~~~~~~l~s~s  325 (423)
                      ..+.. ..+.. |...|++++|+|+|.+|++++ |+.|++||+++++....+.. ..|...+  .+++|+|+|++|++++
T Consensus       201 ~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s  279 (343)
T 3lrv_A          201 SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS  279 (343)
T ss_dssp             CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred             CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEec
Confidence            66654 45566 899999999999999999999 55999999998876554431 1122223  4699999999999999


Q ss_pred             C-CCcEEEEecCCcceeeeeeeCceeEeeEEEEEe---cCcEEEEEeCCCcEEEE
Q psy13076        326 G-DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDYLLTVSLSGFISYL  376 (423)
Q Consensus       326 ~-d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~---~g~~l~~~~~~~~i~~~  376 (423)
                      . |+.+++|++......-..     .....+...+   ++..+++++.++.+.++
T Consensus       280 ~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          280 NESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             TTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             CCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEE
Confidence            8 999999999665422111     0111122222   45667777777766655

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-34  Score=269.01  Aligned_cols=265  Identities=12%  Similarity=0.088  Sum_probs=196.1

Q ss_pred             cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccc
Q psy13076         45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS  124 (423)
Q Consensus        45 gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  124 (423)
                      +-...|.+|+|+|||+++||++.|++|+  |.+..                                             
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---------------------------------------------   45 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---------------------------------------------   45 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---------------------------------------------
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---------------------------------------------
Confidence            3457899999999999999999999998  53321                                             


Q ss_pred             ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       125 ~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      ..+.+|...|..++|+|+|       .++++++|+.+....   ..+ .+...|.+++|||+|+.               
T Consensus        46 ~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~---~~~-~~~~~V~~vawSPdG~~---------------   99 (588)
T 2j04_A           46 KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL---LNS-QPVCYPRVCKPSPIDDW---------------   99 (588)
T ss_dssp             SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS---STT-SCSCCEEEEEECSSSSC---------------
T ss_pred             ceecCCCccEEEEEECCCC-------CcceEEEEeCCCceE---eec-CCCCcEEEEEECCCCCE---------------
Confidence            1225799999999999998       466666665432211   111 11345666666666553               


Q ss_pred             eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc-----CeEEEEECCCCCEEEE
Q psy13076        205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR-----FVQAVRYSPSGSHFAS  279 (423)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~-----~i~~l~~s~~g~~l~s  279 (423)
                                                    +|+++.||.+++|+...  +...+. |..     .+.+++|||||++||+
T Consensus       100 ------------------------------LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAs  146 (588)
T 2j04_A          100 ------------------------------MAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVV  146 (588)
T ss_dssp             ------------------------------EEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred             ------------------------------EEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEE
Confidence                                          66788899999998543  333334 443     4999999999999999


Q ss_pred             EEecCeEEEEECCCccc-------eeccc--ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCccee---eeeeeC
Q psy13076        280 AGFDGKVFLYDGASADL-------VSELG--NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAV---SEFLMG  347 (423)
Q Consensus       280 ~s~dg~i~vwd~~~~~~-------~~~~~--~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i---~~~~~~  347 (423)
                      |+.||+|++||..++..       +.++.  ..+|...|.+++|+|+|  |++++.|++|++||+..++..   .++...
T Consensus       147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~  224 (588)
T 2j04_A          147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA  224 (588)
T ss_dssp             EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC
T ss_pred             EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc
Confidence            99999999999988753       33331  24578899999999999  888999999999999887742   233223


Q ss_pred             ceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEe--cCCCCeEEEecCCCcEEEeeCC
Q psy13076        348 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALAL--SPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       348 ~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~--sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      +......+.++  |..+++++ ++.|++|+..+...... ..+|...|++++|  +||+..|++++.||+ ++|...
T Consensus       225 h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~-~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          225 SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL-KTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-ECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-EcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            33333344444  78888887 69999999987543222 2389999999999  999999999999999 999863

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.3e-33  Score=257.00  Aligned_cols=276  Identities=18%  Similarity=0.219  Sum_probs=209.7

Q ss_pred             eeEEEEe---CCEEEEEeccceEEEEeccCCCCce-eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076          9 QVSCLWQ---GDYLLTVSLSGFISYLDVNNPSTPI-RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus         9 ~~~~~~~---~~~~~~~~~dg~i~~~d~~~~~~~~-~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      +++++++   |++|++++.||.|++||+.+....+ ..+.+|.++|.+++|+|++++|++|+.||+|++||++++.... 
T Consensus        44 ~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-  122 (368)
T 3mmy_A           44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-  122 (368)
T ss_dssp             EEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-
T ss_pred             EEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-
Confidence            4455566   6999999999999999998744444 7889999999999999999999999999999999998754321 


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEE--CCCCCEEEEEccCCcEEEEEcCC
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKY--SPSGFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~--sp~~~~l~s~~~d~~i~vwd~~~  162 (423)
                                                                +.+|...|++++|  +|++.++++++.|+.|++||+.+
T Consensus       123 ------------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A          123 ------------------------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             ------------------------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred             ------------------------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence                                                      1247889999999  99999999999999999999988


Q ss_pred             CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceec-c-cCCCcceeEEEEecCCC---eeEEE
Q psy13076        163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-I-SGQSKPINSCDFKPSRP---FRIIT  237 (423)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~~~---~~~~s  237 (423)
                      .+.......+   ..+.++.+.++  .+++++.+.  ...+|.......... . ........++.+.+...   ..+++
T Consensus       161 ~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (368)
T 3mmy_A          161 SNPMMVLQLP---ERCYCADVIYP--MAVVATAER--GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL  233 (368)
T ss_dssp             SSCSEEEECS---SCEEEEEEETT--EEEEEEGGG--CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred             CcEEEEEecC---CCceEEEecCC--eeEEEeCCC--cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence            7765444332   35666666643  555554433  245565554332211 1 12334455555555432   23899


Q ss_pred             EeCCCeEEEEcCCCc---eeeeecccccc------------CeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc
Q psy13076        238 GSEDNTIAVFEGPPF---KFKMTKQEHSR------------FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN  302 (423)
Q Consensus       238 ~s~d~~i~~~~~~~~---~~~~~~~~~~~------------~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~  302 (423)
                      ++.|+.+++|+....   .....+..|..            .|++++|+|++++|++|+.||.|++||..+++.+..+. 
T Consensus       234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  312 (368)
T 3mmy_A          234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-  312 (368)
T ss_dssp             EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-
T ss_pred             ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-
Confidence            999999999997654   23334444444            69999999999999999999999999999998887774 


Q ss_pred             cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        303 PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       303 ~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                       .|...|.+++|+|++++|++++.|+..+.|++.
T Consensus       313 -~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          313 -QLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             -CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             -CCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence             688999999999999999999999866655543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.9e-33  Score=263.76  Aligned_cols=273  Identities=15%  Similarity=0.198  Sum_probs=199.3

Q ss_pred             eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076         40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE  119 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  119 (423)
                      ...+++|.++|++++|+|  ++|++|+.||+|++||++++.....                                   
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~-----------------------------------   51 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-----------------------------------   51 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----------------------------------
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-----------------------------------
Confidence            457889999999999999  7999999999999999986531110                                   


Q ss_pred             CCcccccccCCcceEEEEEECCC----C---CEEEEEccCCcEEEEEcCCCcee---EEeeecCCCCCeeEEEECCCCCe
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPS----G---FYIASGDISGKVRIWDTVNKEHI---LKNEFHPIGGPIKDIAWSPDNQR  189 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~----~---~~l~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~  189 (423)
                       ......+.+|...|++++|+|+    +   ++|++++.|+.|++||+.+.+..   ....+..+.              
T Consensus        52 -~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--------------  116 (397)
T 1sq9_A           52 -KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD--------------  116 (397)
T ss_dssp             -GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC--------------
T ss_pred             -CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccc--------------
Confidence             1122345579999999999999    9   99999999999999998755420   001111110              


Q ss_pred             EEEEEcCCceeeEEEeecCCcceecccCC--CcceeEEEEe----cCCCeeEEEEeCCCeEEEEcCCC------ceeee-
Q psy13076        190 MVVVGEGRERFGHVFMSETGTSVGEISGQ--SKPINSCDFK----PSRPFRIITGSEDNTIAVFEGPP------FKFKM-  256 (423)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~----~~~~~~~~s~s~d~~i~~~~~~~------~~~~~-  256 (423)
                                                 .+  ...|.+++|+    |++...+++++.|+.|++|+...      ..... 
T Consensus       117 ---------------------------~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  169 (397)
T 1sq9_A          117 ---------------------------SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  169 (397)
T ss_dssp             ---------------------------TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             ---------------------------cccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec
Confidence                                       00  2345555566    55554366777788888887654      22221 


Q ss_pred             ----ec-------cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc-ccc---CCCeEEEEECCCCCeE
Q psy13076        257 ----TK-------QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN-PAH---KGGVYAVAWKPDGTQL  321 (423)
Q Consensus       257 ----~~-------~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~---~~~i~~l~~~~~~~~l  321 (423)
                          .+       ..|...+.+++|+|++ ++++++.||.|++||.++++.+..+.. ..|   ...|.+++|+|++++|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l  248 (397)
T 1sq9_A          170 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL  248 (397)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEE
Confidence                22       4477889999999999 999999999999999998887766641 117   8899999999999999


Q ss_pred             EEEeCC---CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEE
Q psy13076        322 LTASGD---KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITAL  398 (423)
Q Consensus       322 ~s~s~d---~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i  398 (423)
                      ++++.|   +.|++||+++++.+..+.....                               +.........|..+|+++
T Consensus       249 ~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~v~~~  297 (397)
T 1sq9_A          249 AIAHDSNSFGCITLYETEFGERIGSLSVPTH-------------------------------SSQASLGEFAHSSWVMSL  297 (397)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECBC---------------------------------------CCBSBSSCEEEE
T ss_pred             EEEecCCCCceEEEEECCCCcccceeccCcc-------------------------------cccccccccccCCcEEEE
Confidence            999999   9999999998876554421100                               000011123489999999


Q ss_pred             EecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        399 ALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       399 ~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      +|+|++++|++++.|+.|++||+.+
T Consensus       298 ~~~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          298 SFNDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTT
T ss_pred             EECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999999999999999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=285.21  Aligned_cols=258  Identities=21%  Similarity=0.303  Sum_probs=205.2

Q ss_pred             eeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076         40 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE  119 (423)
Q Consensus        40 ~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  119 (423)
                      +.+++||.++|++++|+|++++|++|+.||+|++||+.++..                                      
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~--------------------------------------   43 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH--------------------------------------   43 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE--------------------------------------
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC--------------------------------------
Confidence            347899999999999999999999999999999999863211                                      


Q ss_pred             CCcccccccCCcceEEEEEECCC--CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCC--CCeEEEEEc
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMVVVGE  195 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~~~~~~~  195 (423)
                        .....+.+|...|++++|+|+  ++++++|+.||+|++||+.+++......+..+..+|.+++|+|+  +..+++++.
T Consensus        44 --~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  121 (753)
T 3jro_A           44 --KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS  121 (753)
T ss_dssp             --EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             --ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC
Confidence              112245679999999999998  99999999999999999988764444455667789999999999  888888765


Q ss_pred             CCceeeEEEeecCCc--ceecccCCCcceeEEEEecC------------CCeeEEEEeCCCeEEEEcCCCc----eeeee
Q psy13076        196 GRERFGHVFMSETGT--SVGEISGQSKPINSCDFKPS------------RPFRIITGSEDNTIAVFEGPPF----KFKMT  257 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~------------~~~~~~s~s~d~~i~~~~~~~~----~~~~~  257 (423)
                      +.  ...+|+...+.  ....+..|...+.++.|+|.            +...+++++.|+.|++|+....    .....
T Consensus       122 dg--~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~  199 (753)
T 3jro_A          122 DG--KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  199 (753)
T ss_dssp             TS--EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             CC--cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence            43  45677766553  33455678889999999995            2345899999999999986543    45556


Q ss_pred             ccccccCeEEEEECCC---CCEEEEEEecCeEEEEECCCccce---ecccccccCCCeEEEEECCCCCeEEEEeCCCcEE
Q psy13076        258 KQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASADLV---SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK  331 (423)
Q Consensus       258 ~~~~~~~i~~l~~s~~---g~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~  331 (423)
                      ...|...|.+++|+|+   ++++++|+.||.|++||..+++..   .......|...|.+++|+|+|++|++++.||.|+
T Consensus       200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~  279 (753)
T 3jro_A          200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  279 (753)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEE
T ss_pred             ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEE
Confidence            7789999999999999   899999999999999999876421   1122235788899999999999999999999999


Q ss_pred             EEecCCcc
Q psy13076        332 LWDIETKS  339 (423)
Q Consensus       332 iwd~~~~~  339 (423)
                      +||+....
T Consensus       280 vwd~~~~~  287 (753)
T 3jro_A          280 LWKENLEG  287 (753)
T ss_dssp             CCBCCSSS
T ss_pred             EEecCCCC
Confidence            99998643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-32  Score=257.01  Aligned_cols=244  Identities=24%  Similarity=0.352  Sum_probs=190.9

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      +++++||++|++++.||.|++||+.+ .+.+..+.+|.++|.+++|+  +.+|++|+.|+.|++||+.....        
T Consensus       140 v~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--------  208 (401)
T 4aez_A          140 VKWSHDGSFLSVGLGNGLVDIYDVES-QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH--------  208 (401)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC--------
T ss_pred             EEECCCCCEEEEECCCCeEEEEECcC-CeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc--------
Confidence            44445899999999999999999976 46677899999999999995  56999999999999999874210        


Q ss_pred             CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe
Q psy13076         90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN  169 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~  169 (423)
                                                       ....+.+|...|.+++|+|++.++++++.|+.|++||+.+.+.... 
T Consensus       209 ---------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-  254 (401)
T 4aez_A          209 ---------------------------------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-  254 (401)
T ss_dssp             ---------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-
T ss_pred             ---------------------------------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-
Confidence                                             1123457889999999999999999999999999999987654432 


Q ss_pred             eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe--CCCeEEEE
Q psy13076        170 EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS--EDNTIAVF  247 (423)
Q Consensus       170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s--~d~~i~~~  247 (423)
                       +..+...|.+++|+|++..                                            .+++++  .|+.|++|
T Consensus       255 -~~~~~~~v~~~~~~p~~~~--------------------------------------------ll~~~~gs~d~~i~i~  289 (401)
T 4aez_A          255 -KTNHNAAVKAVAWCPWQSN--------------------------------------------LLATGGGTMDKQIHFW  289 (401)
T ss_dssp             -ECCCSSCCCEEEECTTSTT--------------------------------------------EEEEECCTTTCEEEEE
T ss_pred             -ecCCcceEEEEEECCCCCC--------------------------------------------EEEEecCCCCCEEEEE
Confidence             2334455666666665543                                            344443  78999999


Q ss_pred             cCCCceeeeeccccccCeEEEEECCCCCEEEEEE--ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076        248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG--FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS  325 (423)
Q Consensus       248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s  325 (423)
                      +....+...... +...+.+++|+|+++++++++  .||.|++||..+++........+|...|.+++|+|++++|++++
T Consensus       290 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~  368 (401)
T 4aez_A          290 NAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA  368 (401)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEEC
T ss_pred             ECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence            987666554443 556799999999999999954  89999999998876555444457899999999999999999999


Q ss_pred             CCCcEEEEecCCcceeeee
Q psy13076        326 GDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       326 ~d~~i~iwd~~~~~~i~~~  344 (423)
                      .|++|++||+.+++.+...
T Consensus       369 ~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          369 SDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             TTSEEEEEECCC-------
T ss_pred             CCCcEEEEECCCCcccccc
Confidence            9999999999988766543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.9e-32  Score=257.87  Aligned_cols=279  Identities=14%  Similarity=0.248  Sum_probs=207.8

Q ss_pred             eecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecC
Q psy13076         41 RVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE  119 (423)
Q Consensus        41 ~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  119 (423)
                      ....+|.++|++++|+|+ +.+|++|+.||.|++||+.+......               +.                 .
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------------~~-----------------~  169 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------------PS-----------------G  169 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------------TT-----------------C
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------------cc-----------------c
Confidence            345689999999999997 67999999999999999975311000               00                 0


Q ss_pred             CCcccccccCCcceEEEEEECCCCC-EEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        120 NPAISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       120 ~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                      .......+.+|...|.+++|+|++. +|++++.||+|++||+........         .  +                 
T Consensus       170 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---------~--~-----------------  221 (430)
T 2xyi_A          170 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR---------V--I-----------------  221 (430)
T ss_dssp             CCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG---------E--E-----------------
T ss_pred             cCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc---------e--e-----------------
Confidence            1223345678999999999999988 999999999999999876321000         0  0                 


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc---eeeeeccccccCeEEEEECCCCC
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPSGS  275 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~i~~l~~s~~g~  275 (423)
                                 .....+..|...|.+++|+|.+...+++++.|+.|++|+.+..   +.......|...|++++|+|+++
T Consensus       222 -----------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  290 (430)
T 2xyi_A          222 -----------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE  290 (430)
T ss_dssp             -----------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCT
T ss_pred             -----------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCC
Confidence                       0001122455567777777755556889999999999998754   34445568889999999999998


Q ss_pred             -EEEEEEecCeEEEEECCCc-cceecccccccCCCeEEEEECCCCC-eEEEEeCCCcEEEEecCCcceeeeeeeCceeEe
Q psy13076        276 -HFASAGFDGKVFLYDGASA-DLVSELGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLWDIETKSAVSEFLMGNQVED  352 (423)
Q Consensus       276 -~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~  352 (423)
                       ++++|+.||.|++||+++. ..+..+  ..|...|.+++|+|+++ +|++++.|+.|++||+............     
T Consensus       291 ~~l~tg~~dg~v~vwd~~~~~~~~~~~--~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----  363 (430)
T 2xyi_A          291 FILATGSADKTVALWDLRNLKLKLHSF--ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA-----  363 (430)
T ss_dssp             TEEEEEETTSEEEEEETTCTTSCSEEE--ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH-----
T ss_pred             CEEEEEeCCCeEEEEeCCCCCCCeEEe--ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc-----
Confidence             6899999999999999874 444555  35889999999999995 6899999999999999764321110000     


Q ss_pred             eEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCC-eEEEecCCCcEEEeeCC
Q psy13076        353 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAK  422 (423)
Q Consensus       353 ~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~-~l~s~s~D~~i~~W~~~  422 (423)
                                               ...+...+....+|...|++++|+|+++ +|++++.|+.|++|++.
T Consensus       364 -------------------------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          364 -------------------------EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             -------------------------HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             -------------------------ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence                                     0001233456788999999999999999 89999999999999975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.1e-32  Score=258.36  Aligned_cols=331  Identities=15%  Similarity=0.110  Sum_probs=189.8

Q ss_pred             ccceeeEEEE-----eCCEEEEEeccceEEEEeccCCCCce------ee--cccccCceeEEEEe---------------
Q psy13076          5 VEDQQVSCLW-----QGDYLLTVSLSGFISYLDVNNPSTPI------RV--IKGHNKPITALALS---------------   56 (423)
Q Consensus         5 ~~~~~~~~~~-----~~~~~~~~~~dg~i~~~d~~~~~~~~------~~--~~gh~~~V~~l~~~---------------   56 (423)
                      ++..-.++.|     ++..+++++.|+.|.+|+...+..+.      ..  ...|..++..+.|+               
T Consensus        14 l~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (393)
T 4gq1_A           14 LNVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN   93 (393)
T ss_dssp             TTCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred             CCCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence            3444555556     34445556678899999864322111      00  11234444444443               


Q ss_pred             -----CCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCc
Q psy13076         57 -----PDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS  131 (423)
Q Consensus        57 -----~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~  131 (423)
                           +++.+|++|+.|++||+||.+++.....                                     .....+.+|.
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~-------------------------------------~~~~~~~gH~  136 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQ-------------------------------------HVLGGKSGHH  136 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEE-------------------------------------EEECTTTSCS
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCcccee-------------------------------------eeecccCCCC
Confidence                 4556799999999999999877543211                                     1123578999


Q ss_pred             ceEEEEEECC--------CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076        132 CAVNVAKYSP--------SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV  203 (423)
Q Consensus       132 ~~i~~~~~sp--------~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~  203 (423)
                      +.|++++|+|        |+++|||++.|++|||||+.+.......  ..+..++.+++|+|++..+++.+.. +...++
T Consensus       137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~-d~~v~~  213 (393)
T 4gq1_A          137 NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG--YPLSSPGISVQFRPSNPNQLIVGER-NGNIRI  213 (393)
T ss_dssp             SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE--EECSSCEEEEEEETTEEEEEEEEET-TSEEEE
T ss_pred             CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee--cCCCCCcEEEEECCCCCceEEecCC-CCEEEE
Confidence            9999999998        8999999999999999999776544322  2344677888888876543333322 223445


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEEC-CCCCEEEEEEe
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYS-PSGSHFASAGF  282 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~s~s~  282 (423)
                      |+..++........+........+.+                  +............|...+.+++|+ |+|+.+++++.
T Consensus       214 wd~~t~~~~~~~~~~~~~~~~~~~s~------------------~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~  275 (393)
T 4gq1_A          214 FDWTLNLSAEENSQTELVKNPWLLTL------------------NTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK  275 (393)
T ss_dssp             EETTCCC----------CSCCCSEEE------------------ESGGGC------CCSSSCSEEEEETTTTCEEEEECT
T ss_pred             EECCCCcccccccccCCcccceEEec------------------ccccceeeeecccccccceeeeeecCCCCEEEEEeC
Confidence            55544433222211111100000000                  000001111234566778888876 89999999999


Q ss_pred             cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc
Q psy13076        283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD  362 (423)
Q Consensus       283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~  362 (423)
                      |+.+++||+..++....+.  .|...+..+.+.|+.+.+..........                       .....++.
T Consensus       276 d~~i~vwd~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~  330 (393)
T 4gq1_A          276 SGAWLRWNLFANNDYNEIS--DSTMKLGPKNLLPNVQGISLFPSLLGAC-----------------------PHPRYMDY  330 (393)
T ss_dssp             TSEEEEEEC---------------------CCSCSEEEECSSCCSSCCE-----------------------ECSSCTTE
T ss_pred             CCCEEEEECccCCCCceEe--eecCccccEEEccccccccccCcceeEE-----------------------EccCCCCE
Confidence            9999999998887666553  4667777777777754432221111000                       01112455


Q ss_pred             EEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        363 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       363 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      ++++|+.||.|++||..++.. ...+.+|..+|++++|||||++||++++||. .+|.
T Consensus       331 ~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~V~svafspdG~~LA~as~~Gv-~lvr  386 (393)
T 4gq1_A          331 FATAHSQHGLIQLINTYEKDS-NSIPIQLGMPIVDFCWHQDGSHLAIATEGSV-LLTR  386 (393)
T ss_dssp             EEEEETTTTEEEEEETTCTTC-CEEEEECSSCEEEEEECTTSSEEEEEESSEE-EEEE
T ss_pred             EEEEECCCCEEEEEECCCCcE-EEEecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEE
Confidence            667788899999999887644 4566788999999999999999999998874 4443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-32  Score=252.26  Aligned_cols=275  Identities=14%  Similarity=0.077  Sum_probs=201.0

Q ss_pred             EEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcce
Q psy13076         54 ALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA  133 (423)
Q Consensus        54 ~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~  133 (423)
                      .+.+++.+|++|+.||+|++||+++++.+..+.                                            ...
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--------------------------------------------~~~   78 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--------------------------------------------TPN   78 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--------------------------------------------EEC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--------------------------------------------cCC
Confidence            344678899999999999999998865443221                                            123


Q ss_pred             EEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee
Q psy13076        134 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG  213 (423)
Q Consensus       134 i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (423)
                      |.++.|+|+   +++++.|++|++|+........                                     ...++..+.
T Consensus        79 v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~-------------------------------------~~~~~~~~~  118 (343)
T 3lrv_A           79 PRTGGEHPA---IISRGPCNRLLLLYPGNQITIL-------------------------------------DSKTNKVLR  118 (343)
T ss_dssp             CCTTCCCCS---EEEECSTTEEEEEETTTEEEEE-------------------------------------ETTTCCEEE
T ss_pred             ceeeeeCCc---eEEecCCCeEEEEEccCceEEe-------------------------------------ecCCcceeE
Confidence            445567777   9999999999999976421111                                     111111111


Q ss_pred             c-ccCCCcceeEEEEec--CCCeeEEEEeCCCeEEEEcCCCceeeeec-cccccCeEEEEECCCCCEEEEEEecCeEEEE
Q psy13076        214 E-ISGQSKPINSCDFKP--SRPFRIITGSEDNTIAVFEGPPFKFKMTK-QEHSRFVQAVRYSPSGSHFASAGFDGKVFLY  289 (423)
Q Consensus       214 ~-~~~~~~~i~~~~~~~--~~~~~~~s~s~d~~i~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vw  289 (423)
                      . ...|..+|.+++++|  ++.+ +++++.|++|++||....+..... ..+...+.+++|+|+|.+|++|+.||.|++|
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw  197 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY  197 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence            1 113455788888888  7765 889999999999998776654433 3455679999999999999999999999999


Q ss_pred             ECCCccce-ecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC----ceeEeeEEEEEecCcEE
Q psy13076        290 DGASADLV-SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG----NQVEDQQVSCLWQGDYL  364 (423)
Q Consensus       290 d~~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~l  364 (423)
                      |.++++.. ..+.. .|.+.|.+++|+|++++|++++. ++|++||+++.+.+..+...    .+.....+.+.++|.+|
T Consensus       198 d~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  275 (343)
T 3lrv_A          198 NLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM  275 (343)
T ss_dssp             ESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEE
T ss_pred             ECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEE
Confidence            99998876 55542 48999999999999999999994 59999999988765443210    11111246677899999


Q ss_pred             EEEeC-CCcEEEEecCCCCCceEEeccCCCceeEEEecC---CCCeEEEecCCCcEEEee
Q psy13076        365 LTVSL-SGFISYLDVNNPSTPIRVIKGHNKPITALALSP---DRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       365 ~~~~~-~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp---~~~~l~s~s~D~~i~~W~  420 (423)
                      ++++. ++.+++|+..........     .++..++|+|   +.+.|++++.|+.+.++-
T Consensus       276 ~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          276 IAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             EEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             EEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEE
Confidence            99998 999999999765443222     5788899998   888899999999888763

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=4.3e-30  Score=240.56  Aligned_cols=338  Identities=16%  Similarity=0.163  Sum_probs=247.9

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeE-EEecCCCceEEeecCCcceeecccCCCCCCce
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV-FTGSHDGFITRWNAKTEYIFATLPRTQRGQPI   94 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~   94 (423)
                      +.++++++.|+.|++||+.+ .+.+..+.+|. .+.+++|+|++++| ++++.|++|++||.+++++...+         
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~---------   70 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTS-NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV---------   70 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTT-TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE---------
T ss_pred             CEEEEEcCCCCEEEEEECCC-CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE---------
Confidence            35678889999999999976 46666777775 58999999999876 78889999999999877554322         


Q ss_pred             EEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCcEEEEEcCCCceeEEeeecC
Q psy13076         95 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHP  173 (423)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~  173 (423)
                                                       ..| ..+.+++|+|++++++ +++.++.|++||+.+++......   
T Consensus        71 ---------------------------------~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~---  113 (391)
T 1l0q_A           71 ---------------------------------PAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---  113 (391)
T ss_dssp             ---------------------------------ECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---
T ss_pred             ---------------------------------ECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe---
Confidence                                             112 2688999999999885 55567999999998876554333   


Q ss_pred             CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce
Q psy13076        174 IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK  253 (423)
Q Consensus       174 ~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~  253 (423)
                      ....+.+++|+|+++.+++.+... ....+|+..+++.+..+..+ ..+..+.|+|++..++++++.++.|++||....+
T Consensus       114 ~~~~~~~~~~s~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~  191 (391)
T 1l0q_A          114 TGKSPLGLALSPDGKKLYVTNNGD-KTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS  191 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCcceEEECCCCCEEEEEeCCC-CEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence            235689999999999886665433 34567777777766666554 3568999999998877888899999999987766


Q ss_pred             eeeeccccccCeEEEEECCCCCEEEEEE---ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE-EEEeCCCc
Q psy13076        254 FKMTKQEHSRFVQAVRYSPSGSHFASAG---FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL-LTASGDKT  329 (423)
Q Consensus       254 ~~~~~~~~~~~i~~l~~s~~g~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~s~s~d~~  329 (423)
                      ...... +...+.+++|+|+|+++++++   .++.|++||..+++.+..+..  | ..+.+++|+|++++| ++++.|+.
T Consensus       192 ~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~-~~~~~~~~s~dg~~l~~s~~~d~~  267 (391)
T 1l0q_A          192 VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--G-PDPAGIAVTPDGKKVYVALSFXNT  267 (391)
T ss_dssp             EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--C-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred             EEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec--C-CCccEEEEccCCCEEEEEcCCCCE
Confidence            554443 445688999999999998888   689999999998887766642  3 357899999999987 67788999


Q ss_pred             EEEEecCCcceeeeeeeCceeEe--eEEE------------EEec--------C--cEEEEEeCCCcEEEEecCCCCCce
Q psy13076        330 CKLWDIETKSAVSEFLMGNQVED--QQVS------------CLWQ--------G--DYLLTVSLSGFISYLDVNNPSTPI  385 (423)
Q Consensus       330 i~iwd~~~~~~i~~~~~~~~~~~--~~~~------------~~~~--------g--~~l~~~~~~~~i~~~~~~~~~~~~  385 (423)
                      |++||+.+++.+..+..+.....  ..+.            +..+        .  -.+...+.+...++|+..++..  
T Consensus       268 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~--  345 (391)
T 1l0q_A          268 VSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS--  345 (391)
T ss_dssp             EEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE--
T ss_pred             EEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc--
Confidence            99999999988776644321110  0000            1111        1  2344556677899999876532  


Q ss_pred             EEeccCCCceeEEEecCCCCeEEEe---cCCC
Q psy13076        386 RVIKGHNKPITALALSPDRGTVFTG---SHDG  414 (423)
Q Consensus       386 ~~~~~h~~~v~~i~~sp~~~~l~s~---s~D~  414 (423)
                         ..+..+  ...|+|+|.+.++.   ..||
T Consensus       346 ---~~~~~~--~~~~~~~g~y~~~~~~~~~~g  372 (391)
T 1l0q_A          346 ---SKKQNP--THTYSETGIYTVRLTVSNSNG  372 (391)
T ss_dssp             ---ECSSSC--EECCSSCEEEEEEEEEEETTE
T ss_pred             ---cCcCCC--eEEeCCCceEEEEEEEECCCC
Confidence               123333  46799999987643   3555

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=8.9e-32  Score=239.15  Aligned_cols=276  Identities=9%  Similarity=0.049  Sum_probs=191.7

Q ss_pred             CEEEEEeccceEEEEeccCCC--CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCce
Q psy13076         17 DYLLTVSLSGFISYLDVNNPS--TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPI   94 (423)
Q Consensus        17 ~~~~~~~~dg~i~~~d~~~~~--~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~   94 (423)
                      +.++..+.-..|++|+.....  +.++++++|..||..+++.||...|+--.-                           
T Consensus        54 ~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------------------  106 (356)
T 2w18_A           54 EPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL---------------------------  106 (356)
T ss_dssp             EEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE---------------------------
T ss_pred             ccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee---------------------------
Confidence            345666667799999998743  678899999999999999997543321110                           


Q ss_pred             EEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC----CCEEEEEccCCcEEEEEcCCCceeEEee
Q psy13076         95 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS----GFYIASGDISGKVRIWDTVNKEHILKNE  170 (423)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~----~~~l~s~~~d~~i~vwd~~~~~~~~~~~  170 (423)
                                     |                 .-|...|++++|+|+    ++++++++.+  +++|++.+++.+.. .
T Consensus       107 ---------------~-----------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~s-s  151 (356)
T 2w18_A          107 ---------------G-----------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSS-S  151 (356)
T ss_dssp             ---------------C-----------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEE-E
T ss_pred             ---------------c-----------------cccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEe-c
Confidence                           0                 014457899999999    9999998844  77887654332211 1


Q ss_pred             ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076        171 FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP  250 (423)
Q Consensus       171 ~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~  250 (423)
                      ...+...|+.++|+|+|+.                                                             
T Consensus       152 ~~g~d~~V~~~~~s~dG~~-------------------------------------------------------------  170 (356)
T 2w18_A          152 GTLSDQQVEVMTFAEDGGG-------------------------------------------------------------  170 (356)
T ss_dssp             SSSTTCEEEEEEECTTSCE-------------------------------------------------------------
T ss_pred             ccCCCCcEEEEEECCCCce-------------------------------------------------------------
Confidence            1112333444444444332                                                             


Q ss_pred             CceeeeeccccccCeEEEEECC---CCCEEEEEEecCeEEEEECCCccceeccccc-ccCCCeEEEEECCCCCeE-----
Q psy13076        251 PFKFKMTKQEHSRFVQAVRYSP---SGSHFASAGFDGKVFLYDGASADLVSELGNP-AHKGGVYAVAWKPDGTQL-----  321 (423)
Q Consensus       251 ~~~~~~~~~~~~~~i~~l~~s~---~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l-----  321 (423)
                          ......|...++.++|+|   ++.+|++|+.|++|++||+++++.+.++... .+...+.+++|+|+|+++     
T Consensus       171 ----~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~  246 (356)
T 2w18_A          171 ----KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH  246 (356)
T ss_dssp             ----EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred             ----eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence                222334556677888998   7799999999999999999999998888521 123467888999999876     


Q ss_pred             -------EEEeCCCcEEEEecCCcceeeeeee----CceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc
Q psy13076        322 -------LTASGDKTCKLWDIETKSAVSEFLM----GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG  390 (423)
Q Consensus       322 -------~s~s~d~~i~iwd~~~~~~i~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  390 (423)
                             ++|+.|++|++||..+++++..+..    ++...  .+....++..+++++.|+.|++||+.++ +.++.+.+
T Consensus       247 ~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~--~lsg~~sg~~lASgS~DgTIkIWDl~tG-k~l~tL~g  323 (356)
T 2w18_A          247 PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR--FLEGDVKDHCAAAILTSGTIAIWDLLLG-QCTALLPP  323 (356)
T ss_dssp             -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCC--EEEEEEETTEEEEEETTSCEEEEETTTC-SEEEEECC
T ss_pred             CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce--eEccccCCCEEEEEcCCCcEEEEECCCC-cEEEEecC
Confidence                   6688999999999999988765421    11111  2233445778999999999999999886 45678899


Q ss_pred             CCCcee-EEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        391 HNKPIT-ALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       391 h~~~v~-~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      |...+. .++||||+++|+||+.|++|++||+.
T Consensus       324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             C--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            988766 58999999999999999999999963

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=5.2e-31  Score=250.23  Aligned_cols=309  Identities=12%  Similarity=0.099  Sum_probs=225.7

Q ss_pred             EeccceEEEEeccCCC---CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEee
Q psy13076         22 VSLSGFISYLDVNNPS---TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG   98 (423)
Q Consensus        22 ~~~dg~i~~~d~~~~~---~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~   98 (423)
                      ++.++.+.+|.++...   +.+..+..+. .+.+++|+|++.++++++.|++|++||.++++......            
T Consensus        95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~------------  161 (433)
T 3bws_A           95 KPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP------------  161 (433)
T ss_dssp             SGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC------------
T ss_pred             ccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC------------
Confidence            3445534455443211   3444555554 45699999988889999999999999998865543211            


Q ss_pred             CCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCe
Q psy13076         99 DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI  178 (423)
Q Consensus        99 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v  178 (423)
                                               ...+.+|...|.+++|+|+++++++++.|+.|++||.++.+.....  ..+...+
T Consensus       162 -------------------------~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~--~~~~~~~  214 (433)
T 3bws_A          162 -------------------------PEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV--DLTGKWS  214 (433)
T ss_dssp             -------------------------CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE--ECSSSSE
T ss_pred             -------------------------cccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE--cCCCCCe
Confidence                                     1134578889999999999999999999999999999776544322  2223445


Q ss_pred             eEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec
Q psy13076        179 KDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK  258 (423)
Q Consensus       179 ~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~  258 (423)
                      .+++|+|+++                                            ..+++++.++.|++||....+.....
T Consensus       215 ~~~~~~~~~~--------------------------------------------~l~~~~~~~~~i~~~d~~~~~~~~~~  250 (433)
T 3bws_A          215 KILLYDPIRD--------------------------------------------LVYCSNWISEDISVIDRKTKLEIRKT  250 (433)
T ss_dssp             EEEEEETTTT--------------------------------------------EEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             eEEEEcCCCC--------------------------------------------EEEEEecCCCcEEEEECCCCcEEEEe
Confidence            5555555544                                            33445567888899987766655544


Q ss_pred             cccccCeEEEEECCCCCEEEEEEe--------cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE-EEEeCCCc
Q psy13076        259 QEHSRFVQAVRYSPSGSHFASAGF--------DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL-LTASGDKT  329 (423)
Q Consensus       259 ~~~~~~i~~l~~s~~g~~l~s~s~--------dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~s~s~d~~  329 (423)
                      ..+ ..+.+++|+|+|+++++++.        ||.|++||..+++....+   .|...+.+++|+|+++.+ ++++.|+.
T Consensus       251 ~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~  326 (433)
T 3bws_A          251 DKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI---GPPGNKRHIVSGNTENKIYVSDMCCSK  326 (433)
T ss_dssp             CCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE---EEEECEEEEEECSSTTEEEEEETTTTE
T ss_pred             cCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec---cCCCCcceEEECCCCCEEEEEecCCCE
Confidence            443 34889999999999999884        889999999988776554   355678999999999754 66688999


Q ss_pred             EEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeC---------------CCcEEEEecCCCCCceEEeccCCCc
Q psy13076        330 CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL---------------SGFISYLDVNNPSTPIRVIKGHNKP  394 (423)
Q Consensus       330 i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~---------------~~~i~~~~~~~~~~~~~~~~~h~~~  394 (423)
                      |++||+.+++.+..+.....  ...+.+.++|+++++++.               ||.+++||..+.. .+..+.+ ...
T Consensus       327 v~v~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~-~~~~~~~-~~~  402 (433)
T 3bws_A          327 IEVYDLKEKKVQKSIPVFDK--PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT-VKEFWEA-GNQ  402 (433)
T ss_dssp             EEEEETTTTEEEEEEECSSS--EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE-EEEEEEC-SSS
T ss_pred             EEEEECCCCcEEEEecCCCC--CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc-EEEEecC-CCC
Confidence            99999999887776653322  345666778998887776               4699999997753 3444554 467


Q ss_pred             eeEEEecCCCCeEEEec-CCCcEEEeeCC
Q psy13076        395 ITALALSPDRGTVFTGS-HDGFITRWNAK  422 (423)
Q Consensus       395 v~~i~~sp~~~~l~s~s-~D~~i~~W~~~  422 (423)
                      +.+++|+|++++|++++ .|+.|++|+++
T Consensus       403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          403 PTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             CceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            99999999999998776 59999999976

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.5e-32  Score=256.97  Aligned_cols=285  Identities=15%  Similarity=0.235  Sum_probs=183.8

Q ss_pred             CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee---------EEeeecCCC------------CCeeEEEECCCC
Q psy13076        129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI---------LKNEFHPIG------------GPIKDIAWSPDN  187 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~---------~~~~~~~~~------------~~v~~v~~s~~~  187 (423)
                      .|.+.|++++|+|+|++||+|+.|+.|++||+.+.+..         ....+..+.            .+|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            46789999999999999999999999999998765420         112233333            456666666665


Q ss_pred             --CeEEEEEcCCceeeEEEeecCCcceec---ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccc
Q psy13076        188 --QRMVVVGEGRERFGHVFMSETGTSVGE---ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS  262 (423)
Q Consensus       188 --~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~  262 (423)
                        ..+++++.+  ....+|....+.....   +..+...+...  .......+......+ . +..  ..........|.
T Consensus       106 ~~~~l~s~s~d--~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~-~-~~~--~~~~~~~~~~h~  177 (447)
T 3dw8_B          106 NAAQFLLSTND--KTIKLWKISERDKRPEGYNLKEEDGRYRDP--TTVTTLRVPVFRPMD-L-MVE--ASPRRIFANAHT  177 (447)
T ss_dssp             SSSEEEEEECS--SCEEEEEEEEEEEEEECCSCC--------C--CCCCSCCCCEEEEEE-E-EEE--EEEEEEECSCCS
T ss_pred             CcceEEEeCCC--CeEEEEecccccCCcceecccCccccccCc--ccccceEeccccchh-e-eee--ccceEEeccCCC
Confidence              344444322  2233443332211100   00000000000  000000000000000 0 000  000011235788


Q ss_pred             cCeEEEEECCCCCEEEEEEecCeEEEEECCCc-cceecc-----cccccCCCeEEEEECCCC-CeEEEEeCCCcEEEEec
Q psy13076        263 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASA-DLVSEL-----GNPAHKGGVYAVAWKPDG-TQLLTASGDKTCKLWDI  335 (423)
Q Consensus       263 ~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~-~~~~~~-----~~~~~~~~i~~l~~~~~~-~~l~s~s~d~~i~iwd~  335 (423)
                      ..|.+++|+|+|++|++| .|+.|++||+.+. +....+     ....|...|.+++|+|++ ++|++++.|++|++||+
T Consensus       178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence            899999999999999998 7999999999843 333321     234688999999999998 99999999999999999


Q ss_pred             CCcce----eeeeeeCce-----------eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCc------
Q psy13076        336 ETKSA----VSEFLMGNQ-----------VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP------  394 (423)
Q Consensus       336 ~~~~~----i~~~~~~~~-----------~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~------  394 (423)
                      ++++.    +..+.....           .....+.+.++|.+|++++. +.+++||++....++..+.+|...      
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~  335 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS  335 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence            98876    454433221           14456667789999999999 999999998766677788888642      


Q ss_pred             ---------eeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        395 ---------ITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       395 ---------v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                               +..++|+|++++|++|+.||.|++||+.+
T Consensus       336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred             cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence                     33499999999999999999999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-32  Score=273.20  Aligned_cols=254  Identities=19%  Similarity=0.250  Sum_probs=196.6

Q ss_pred             ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       125 ~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      .++.+|.+.|++++|+|+++++++|+.||+|++||+.+........+..+.++|.+++|+|+..                
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~----------------   66 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF----------------   66 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTS----------------
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCC----------------
Confidence            4578999999999999999999999999999999987443322233333444555555544310                


Q ss_pred             eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce--eeeeccccccCeEEEEECCC--CCEEEEE
Q psy13076        205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK--FKMTKQEHSRFVQAVRYSPS--GSHFASA  280 (423)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~--~~~~~~~~~~~i~~l~~s~~--g~~l~s~  280 (423)
                                                +. .+++++.||.|++|+.....  .......|...|.+++|+|+  ++++++|
T Consensus        67 --------------------------~~-~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg  119 (753)
T 3jro_A           67 --------------------------GT-ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA  119 (753)
T ss_dssp             --------------------------CS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             --------------------------CC-EEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEE
Confidence                                      22 37888999999999976654  55566788999999999999  9999999


Q ss_pred             EecCeEEEEECCCccceecccccccCCCeEEEEECC-------------CCCeEEEEeCCCcEEEEecCCcce----eee
Q psy13076        281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-------------DGTQLLTASGDKTCKLWDIETKSA----VSE  343 (423)
Q Consensus       281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~-------------~~~~l~s~s~d~~i~iwd~~~~~~----i~~  343 (423)
                      +.||.|++||+.++..........|...|.+++|+|             ++++|++++.|++|++||++++..    +..
T Consensus       120 s~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~  199 (753)
T 3jro_A          120 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  199 (753)
T ss_dssp             ETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             eCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence            999999999998875444434456889999999999             589999999999999999987643    222


Q ss_pred             eeeCceeEeeEEEEEec---CcEEEEEeCCCcEEEEecCCCCC----ceEEeccCCCceeEEEecCCCCeEEEecCCCcE
Q psy13076        344 FLMGNQVEDQQVSCLWQ---GDYLLTVSLSGFISYLDVNNPST----PIRVIKGHNKPITALALSPDRGTVFTGSHDGFI  416 (423)
Q Consensus       344 ~~~~~~~~~~~~~~~~~---g~~l~~~~~~~~i~~~~~~~~~~----~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i  416 (423)
                      + ..+......+...++   +.++++++.+|.|++||..+...    ......+|...|++++|+|++++|++++.||.|
T Consensus       200 ~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I  278 (753)
T 3jro_A          200 L-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV  278 (753)
T ss_dssp             E-CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred             e-cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence            2 223334455666777   89999999999999999987532    222345699999999999999999999999999


Q ss_pred             EEeeCC
Q psy13076        417 TRWNAK  422 (423)
Q Consensus       417 ~~W~~~  422 (423)
                      ++|++.
T Consensus       279 ~vwd~~  284 (753)
T 3jro_A          279 TLWKEN  284 (753)
T ss_dssp             ECCBCC
T ss_pred             EEEecC
Confidence            999976

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=5e-31  Score=250.28  Aligned_cols=249  Identities=20%  Similarity=0.325  Sum_probs=193.9

Q ss_pred             eeEEEEe-CCEEEEEeccceEEEEeccCC---------CCceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecC
Q psy13076          9 QVSCLWQ-GDYLLTVSLSGFISYLDVNNP---------STPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAK   77 (423)
Q Consensus         9 ~~~~~~~-~~~~~~~~~dg~i~~~d~~~~---------~~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~   77 (423)
                      .++++++ +.++|+++.||.|++||+...         ..+...+.+|.++|.+++|+|+++ +|++|+.||+|++|++.
T Consensus       133 ~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  212 (430)
T 2xyi_A          133 RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN  212 (430)
T ss_dssp             EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETT
T ss_pred             EEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCC
Confidence            4556665 789999999999999999752         466778999999999999999988 99999999999999998


Q ss_pred             CcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC-CCCEEEEEccCCcEE
Q psy13076         78 TEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVR  156 (423)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~  156 (423)
                      ++......                                   ......+.+|...|.+++|+| ++.++++++.|+.|+
T Consensus       213 ~~~~~~~~-----------------------------------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~  257 (430)
T 2xyi_A          213 ATPKEHRV-----------------------------------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM  257 (430)
T ss_dssp             SCCBGGGE-----------------------------------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             CCCCCCce-----------------------------------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence            63210000                                   001224567999999999999 788999999999999


Q ss_pred             EEEcCCCcee-EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeE
Q psy13076        157 IWDTVNKEHI-LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI  235 (423)
Q Consensus       157 vwd~~~~~~~-~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  235 (423)
                      +||+++.... ....                                            +..|...+++++|+|++.+.+
T Consensus       258 i~d~~~~~~~~~~~~--------------------------------------------~~~~~~~v~~i~~~p~~~~~l  293 (430)
T 2xyi_A          258 IWDTRNNNTSKPSHT--------------------------------------------VDAHTAEVNCLSFNPYSEFIL  293 (430)
T ss_dssp             EEETTCSCSSSCSEE--------------------------------------------EECCSSCEEEEEECSSCTTEE
T ss_pred             EEECCCCCCCcceeE--------------------------------------------eecCCCCeEEEEeCCCCCCEE
Confidence            9999764210 0001                                            112334566666666666668


Q ss_pred             EEEeCCCeEEEEcCCC-ceeeeeccccccCeEEEEECCCCC-EEEEEEecCeEEEEECCCc--------------cceec
Q psy13076        236 ITGSEDNTIAVFEGPP-FKFKMTKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGASA--------------DLVSE  299 (423)
Q Consensus       236 ~s~s~d~~i~~~~~~~-~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~~~--------------~~~~~  299 (423)
                      ++++.|+.|++|+.+. ......+..|...|.+++|+|+++ +|++++.||.|++||+...              +.+..
T Consensus       294 ~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  373 (430)
T 2xyi_A          294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI  373 (430)
T ss_dssp             EEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred             EEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE
Confidence            8899999999999875 334455667889999999999996 6899999999999998762              22222


Q ss_pred             ccccccCCCeEEEEECCCCC-eEEEEeCCCcEEEEecCCc
Q psy13076        300 LGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       300 ~~~~~~~~~i~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~  338 (423)
                      +  .+|...|.+++|+|+++ +|++++.|+.|++|++...
T Consensus       374 ~--~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          374 H--GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             C--CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             c--CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            2  46888999999999999 8999999999999998765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-30  Score=247.33  Aligned_cols=286  Identities=14%  Similarity=0.110  Sum_probs=205.9

Q ss_pred             ceeeEEEEeCCEEEEEeccceEEEEeccCCCC--ceeecc----------------------------------------
Q psy13076          7 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPST--PIRVIK----------------------------------------   44 (423)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~~~----------------------------------------   44 (423)
                      =+++++++||++|++ +.++.|++||+.++.+  .+..+.                                        
T Consensus         7 ~~~v~~s~dg~~l~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (450)
T 2vdu_B            7 LQNLLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK   85 (450)
T ss_dssp             CCEEEECSSSSEEEE-EETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred             EEEEEecCCCCEEEE-EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence            367888889997665 5688999999876441  233333                                        


Q ss_pred             --------------cccCceeEEEEeCCCCeE-EEecCCCceEEeecC--CcceeecccCCCCCCceEEeeCCCCCeEEE
Q psy13076         45 --------------GHNKPITALALSPDRGTV-FTGSHDGFITRWNAK--TEYIFATLPRTQRGQPIVLGGDPKGKNFLY  107 (423)
Q Consensus        45 --------------gh~~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (423)
                                    +|.+.|.+++|+|++++| ++|+.|++|++||+.  ++..+..+.                     
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~---------------------  144 (450)
T 2vdu_B           86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK---------------------  144 (450)
T ss_dssp             --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE---------------------
T ss_pred             ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee---------------------
Confidence                          345579999999999986 999999999999987  543332210                     


Q ss_pred             ecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCC
Q psy13076        108 TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN  187 (423)
Q Consensus       108 ~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  187 (423)
                                         ...|...|.+++|+|++++|++++.|+.+++|++.+.+....                   
T Consensus       145 -------------------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~-------------------  186 (450)
T 2vdu_B          145 -------------------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF-------------------  186 (450)
T ss_dssp             -------------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC-------------------
T ss_pred             -------------------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc-------------------
Confidence                               013567899999999999999999999999999876442100                   


Q ss_pred             CeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecC---CCeeEEEEeCCCeEEEEcCCCceeeee-cccccc
Q psy13076        188 QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS---RPFRIITGSEDNTIAVFEGPPFKFKMT-KQEHSR  263 (423)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~s~s~d~~i~~~~~~~~~~~~~-~~~~~~  263 (423)
                                             ....+.+|...|.+++|+|+   +. .+++++.|+.|++|+....+.... ...|..
T Consensus       187 -----------------------~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          187 -----------------------TQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             -----------------------CCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             -----------------------cceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence                                   00112234456667777776   44 478899999999999876655444 557899


Q ss_pred             CeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc-----------------------ccCCCeEEEEECCCCCe
Q psy13076        264 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----------------------AHKGGVYAVAWKPDGTQ  320 (423)
Q Consensus       264 ~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----------------------~~~~~i~~l~~~~~~~~  320 (423)
                      .|.+++|+ +|++|++++.|+.|++||+.+++.+..+...                       .....+.+++|+|++++
T Consensus       243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  321 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF  321 (450)
T ss_dssp             CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred             ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence            99999999 9999999999999999999998876655321                       22356899999999999


Q ss_pred             EEEEe-CCCcEEEEec--CCc---ceeeeeeeCceeEeeEEEEEecCcEEEEEeC-------CCcEEEEecCC
Q psy13076        321 LLTAS-GDKTCKLWDI--ETK---SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL-------SGFISYLDVNN  380 (423)
Q Consensus       321 l~s~s-~d~~i~iwd~--~~~---~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~-------~~~i~~~~~~~  380 (423)
                      |++++ .|+.|++||+  ..+   +.+..+...  .....+.+.+ +..+++.+.       +..+.+|.+..
T Consensus       322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~-~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHN-DEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEET-TEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecC-CcEEEEEecccCCCCCCcceEEEEEEc
Confidence            99999 8999999999  554   444444333  2233444444 334444332       44577776654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=1.3e-31  Score=251.25  Aligned_cols=257  Identities=12%  Similarity=0.069  Sum_probs=170.5

Q ss_pred             EeCCEEEEEeccceEEEEeccCCCC----ceeecccccCceeEEEEeC--------CCCeEEEecCCCceEEeecCCcce
Q psy13076         14 WQGDYLLTVSLSGFISYLDVNNPST----PIRVIKGHNKPITALALSP--------DRGTVFTGSHDGFITRWNAKTEYI   81 (423)
Q Consensus        14 ~~~~~~~~~~~dg~i~~~d~~~~~~----~~~~~~gh~~~V~~l~~~~--------~~~~l~sg~~D~~i~vW~~~~~~~   81 (423)
                      +++.+||+++.|+.|++||.+++..    ++..++||.+.|++++|+|        ++++|+|||.|++||+||+.++..
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~  178 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP  178 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce
Confidence            4688999999999999999876432    2346889999999999998        788999999999999999876432


Q ss_pred             eecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCC-CEEEEEccCCcEEEEEc
Q psy13076         82 FATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDT  160 (423)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~~~d~~i~vwd~  160 (423)
                      ..                                          .+.+|...|.+++|+|++ .+|++++.|++|++||+
T Consensus       179 ~~------------------------------------------~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~  216 (393)
T 4gq1_A          179 IL------------------------------------------AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDW  216 (393)
T ss_dssp             EE------------------------------------------EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred             ee------------------------------------------eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEEC
Confidence            21                                          123577789999999987 48999999999999999


Q ss_pred             CCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC
Q psy13076        161 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE  240 (423)
Q Consensus       161 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~  240 (423)
                      .+++................+.+.+.                     .........++...+.++.|.+.....+++++.
T Consensus       217 ~t~~~~~~~~~~~~~~~~~~~s~~~~---------------------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~  275 (393)
T 4gq1_A          217 TLNLSAEENSQTELVKNPWLLTLNTL---------------------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK  275 (393)
T ss_dssp             TCCC----------CSCCCSEEEESG---------------------GGC------CCSSSCSEEEEETTTTCEEEEECT
T ss_pred             CCCcccccccccCCcccceEEecccc---------------------cceeeeecccccccceeeeeecCCCCEEEEEeC
Confidence            87654332211110000001111110                     001111234566778888887444345899999


Q ss_pred             CCeEEEEcCCCceeeeeccccccC------------------eEEEEECC--CCCEEEEEEecCeEEEEECCCccceecc
Q psy13076        241 DNTIAVFEGPPFKFKMTKQEHSRF------------------VQAVRYSP--SGSHFASAGFDGKVFLYDGASADLVSEL  300 (423)
Q Consensus       241 d~~i~~~~~~~~~~~~~~~~~~~~------------------i~~l~~s~--~g~~l~s~s~dg~i~vwd~~~~~~~~~~  300 (423)
                      |+++++|+....+....+..+...                  .....++|  ++.++++|+.||.|++||..+++....+
T Consensus       276 d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~  355 (393)
T 4gq1_A          276 SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP  355 (393)
T ss_dssp             TSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE
T ss_pred             CCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe
Confidence            999999986543322222222111                  11223333  3446778889999999999988876655


Q ss_pred             cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        301 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       301 ~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      .  .|...|.+++|+|+|++||+++.+| +.+|.+.
T Consensus       356 ~--~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          356 I--QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             E--ECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             c--CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            3  5778999999999999999999776 6666543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=2.4e-29  Score=238.80  Aligned_cols=278  Identities=14%  Similarity=0.099  Sum_probs=218.4

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCcee-----ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR-----VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-----~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      .+++++++.++++++.|+.|++||+.+. +...     .+.+|.+.|.+++|+++++++++++.|++|++||.++++...
T Consensus       127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~  205 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLEDEGMDVLDINSG-QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA  205 (433)
T ss_dssp             CCEESSSSEEEEEBTTSSSEEEEETTTC-CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEECCCC-eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE
Confidence            4566677788888888999999999763 4444     456899999999999999999999999999999998754432


Q ss_pred             cccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCcEEEEEcCC
Q psy13076         84 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVN  162 (423)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~i~vwd~~~  162 (423)
                      .                                          +..|...+.+++|+|++++++ +++.|+.|++||+.+
T Consensus       206 ~------------------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  243 (433)
T 3bws_A          206 T------------------------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT  243 (433)
T ss_dssp             E------------------------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             E------------------------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence            2                                          234667789999999999885 555899999999987


Q ss_pred             CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC------ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEE
Q psy13076        163 KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR------ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII  236 (423)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  236 (423)
                      ++......   ....+.+++|+|+++.+++++...      +....+|+..+++.+..+ .+...+..++|+|++..+++
T Consensus       244 ~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~  319 (433)
T 3bws_A          244 KLEIRKTD---KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYV  319 (433)
T ss_dssp             TEEEEECC---CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEE
T ss_pred             CcEEEEec---CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEE
Confidence            76543322   235689999999999988876432      334556766666554443 33457888999999988788


Q ss_pred             EEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe---------------cCeEEEEECCCccceeccc
Q psy13076        237 TGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF---------------DGKVFLYDGASADLVSELG  301 (423)
Q Consensus       237 s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~---------------dg~i~vwd~~~~~~~~~~~  301 (423)
                      +++.++.+++|+....+...... +...+.+++|+|+|+++++++.               ||.|++||..+++....+.
T Consensus       320 ~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~  398 (433)
T 3bws_A          320 SDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE  398 (433)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             EecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec
Confidence            88999999999987766554443 5667899999999999888876               5799999999988776664


Q ss_pred             ccccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecCC
Q psy13076        302 NPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIET  337 (423)
Q Consensus       302 ~~~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~  337 (423)
                         +...+.+++|+|+|++|++++. |++|++|++..
T Consensus       399 ---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          399 ---AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             ---CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ---CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence               2457899999999999988875 99999999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.6e-28  Score=228.46  Aligned_cols=308  Identities=17%  Similarity=0.184  Sum_probs=231.1

Q ss_pred             CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEE
Q psy13076         60 GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKY  139 (423)
Q Consensus        60 ~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~  139 (423)
                      .++++++.|++|++||+++++++..+                                          .+|. .+.+++|
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~------------------------------------------~~~~-~~~~~~~   39 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATI------------------------------------------PVGS-NPMGAVI   39 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE------------------------------------------ECSS-SEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEe------------------------------------------ecCC-CcceEEE
Confidence            46889999999999999876554322                                          2233 4789999


Q ss_pred             CCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCC
Q psy13076        140 SPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ  218 (423)
Q Consensus       140 sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (423)
                      +|+++++ ++++.|++|++||..+++.......   ...+.+++|+|+++.+++++... ....+|+..+++.+..+..+
T Consensus        40 s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~---~~~v~~~~~spdg~~l~~~~~~~-~~v~v~d~~~~~~~~~~~~~  115 (391)
T 1l0q_A           40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---GSSPQGVAVSPDGKQVYVTNMAS-STLSVIDTTSNTVAGTVKTG  115 (391)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEECS
T ss_pred             CCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC---CCCccceEECCCCCEEEEEECCC-CEEEEEECCCCeEEEEEeCC
Confidence            9999977 6788999999999988776543332   24799999999999888776543 34567777777766665544


Q ss_pred             CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEE-EEEEecCeEEEEECCCccce
Q psy13076        219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF-ASAGFDGKVFLYDGASADLV  297 (423)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~s~s~dg~i~vwd~~~~~~~  297 (423)
                       ..+.+++|+|++..++++++.++.|++|+....+.......+ ..+..++|+|+|+++ ++++.|+.|++||.++++..
T Consensus       116 -~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~  193 (391)
T 1l0q_A          116 -KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI  193 (391)
T ss_dssp             -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             -CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence             467899999999886788999999999998777666555444 446899999999987 66778999999999988776


Q ss_pred             ecccccccCCCeEEEEECCCCCeEEEEe---CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEE-EEEeCCCcE
Q psy13076        298 SELGNPAHKGGVYAVAWKPDGTQLLTAS---GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL-LTVSLSGFI  373 (423)
Q Consensus       298 ~~~~~~~~~~~i~~l~~~~~~~~l~s~s---~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l-~~~~~~~~i  373 (423)
                      ..+.   +...+.+++|+|++++|++++   .++.|++||+.+++.+..+.....  ...+.+.++|+++ ++++.++.+
T Consensus       194 ~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~s~~~d~~v  268 (391)
T 1l0q_A          194 DTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD--PAGIAVTPDGKKVYVALSFXNTV  268 (391)
T ss_dssp             EEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS--EEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEe---cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC--ccEEEEccCCCEEEEEcCCCCEE
Confidence            6553   456789999999999999888   689999999999887776654332  3445666789887 566889999


Q ss_pred             EEEecCCCCCceEEeccCCCcee---EEEecC------------CC----------CeEEEecCCCcEEEeeCC
Q psy13076        374 SYLDVNNPSTPIRVIKGHNKPIT---ALALSP------------DR----------GTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       374 ~~~~~~~~~~~~~~~~~h~~~v~---~i~~sp------------~~----------~~l~s~s~D~~i~~W~~~  422 (423)
                      ++||+.+. ..+..+..|..+..   .+.+.|            +.          ..+.+.+.|...++|++.
T Consensus       269 ~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  341 (391)
T 1l0q_A          269 SVIDTATN-TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFG  341 (391)
T ss_dssp             EEEETTTT-EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECS
T ss_pred             EEEECCCC-cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECC
Confidence            99999875 33455555554422   122222            11          235666789999999974

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=5.2e-29  Score=236.78  Aligned_cols=199  Identities=23%  Similarity=0.361  Sum_probs=157.6

Q ss_pred             ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc
Q psy13076         44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI  123 (423)
Q Consensus        44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  123 (423)
                      .+|..+|.++++  ++++|++|+.||+|++||.++++...                                        
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~----------------------------------------  167 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR----------------------------------------  167 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE----------------------------------------
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE----------------------------------------
Confidence            457778998887  78899999999999999998754332                                        


Q ss_pred             cccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076        124 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV  203 (423)
Q Consensus       124 ~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~  203 (423)
                        .+.+|...|.+++|  +++++++|+.||+|++||+.+++....  +..+..                           
T Consensus       168 --~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~---------------------------  214 (435)
T 1p22_A          168 --ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT--LIHHCE---------------------------  214 (435)
T ss_dssp             --EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE--ECCCCS---------------------------
T ss_pred             --EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE--EcCCCC---------------------------
Confidence              34578889999998  788999999999999999987654322  222233                           


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee---eeeccccccCeEEEEECCCCCEEEEE
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF---KMTKQEHSRFVQAVRYSPSGSHFASA  280 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~---~~~~~~~~~~i~~l~~s~~g~~l~s~  280 (423)
                                       .+.++.|++.   .+++++.|+.|++|+......   ......|...|.++++  +++++++|
T Consensus       215 -----------------~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~  272 (435)
T 1p22_A          215 -----------------AVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA  272 (435)
T ss_dssp             -----------------CEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred             -----------------cEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEE
Confidence                             3444444422   478899999999999764432   2556788889999998  78899999


Q ss_pred             EecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeee
Q psy13076        281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE  343 (423)
Q Consensus       281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~  343 (423)
                      +.||.|++||.++++.+..+.  .|...+.+++|  ++++|++++.|++|++||+++++++..
T Consensus       273 ~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~  331 (435)
T 1p22_A          273 SGDRTIKVWNTSTCEFVRTLN--GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV  331 (435)
T ss_dssp             ETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             eCCCeEEEEECCcCcEEEEEc--CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            999999999999998887774  58889999998  467999999999999999988765443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.9e-29  Score=237.31  Aligned_cols=247  Identities=20%  Similarity=0.304  Sum_probs=191.0

Q ss_pred             EEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee
Q psy13076        135 NVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG  213 (423)
Q Consensus       135 ~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (423)
                      ..++++|+...+ ++++.||.|++|++.+.....                                          ....
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~------------------------------------------~~~~   75 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD------------------------------------------KNVP   75 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC------------------------------------------TTCC
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC------------------------------------------CCCc
Confidence            346788876544 457889999999985432110                                          0011


Q ss_pred             cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc-------eeeeeccccccCeEEEEECCCC-CEEEEEEecCe
Q psy13076        214 EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF-------KFKMTKQEHSRFVQAVRYSPSG-SHFASAGFDGK  285 (423)
Q Consensus       214 ~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~-------~~~~~~~~~~~~i~~l~~s~~g-~~l~s~s~dg~  285 (423)
                      .+.+|...|.+++|+|.+...+++++.|+.|++|+....       .....+..|...|.+++|+|++ .+|++++.||.
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence            233455566666666622234888999999999997665       3445667899999999999998 69999999999


Q ss_pred             EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCc-eeEeeEEEEEecCcEE
Q psy13076        286 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN-QVEDQQVSCLWQGDYL  364 (423)
Q Consensus       286 i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~l  364 (423)
                      |++||+.+++....+....|...|.+++|+|++++|++++.|++|++||+++++.+..+...+ ......+...++|.++
T Consensus       156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (402)
T 2aq5_A          156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL  235 (402)
T ss_dssp             EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred             EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence            999999999887776324688999999999999999999999999999999998887763222 2224456666789999


Q ss_pred             EEE---eCCCcEEEEecCCCCCceEEe-ccCCCceeEEEecCCCCeEE-EecCCCcEEEeeCCC
Q psy13076        365 LTV---SLSGFISYLDVNNPSTPIRVI-KGHNKPITALALSPDRGTVF-TGSHDGFITRWNAKT  423 (423)
Q Consensus       365 ~~~---~~~~~i~~~~~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~l~-s~s~D~~i~~W~~~~  423 (423)
                      +++   +.++.+++||+.+...++... ..|...|.+++|+|++++|+ +++.|+.|++||+.+
T Consensus       236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred             EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence            998   789999999998876644443 36888999999999999986 566899999999763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=9.6e-29  Score=228.39  Aligned_cols=286  Identities=12%  Similarity=0.104  Sum_probs=200.8

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeE-EEecCCCceEEeecCCcceeecccC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV-FTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      ++++++||++|++|+.+| +++||+.. .+..  +..+...+..+++.++++.+ ++|+.|++|++||.++++.+..+..
T Consensus        24 ~v~fs~dg~~la~g~~~~-~~iw~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~   99 (355)
T 3vu4_A           24 DYEFNQDQSCLILSTLKS-FEIYNVHP-VAHI--MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV   99 (355)
T ss_dssp             EEEECTTSSEEEEECSSE-EEEEEETT-EEEE--EEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEECCCCCEEEEEcCCE-EEEEecCC-ccee--eeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC
Confidence            566777999999988775 78999864 2222  23333468889999988876 6788999999999999887776643


Q ss_pred             CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC-cccccccCCcceEEEEEECCCCCEEEE--EccCCcEEEEEcCCCc
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP-AISDIYTEHSCAVNVAKYSPSGFYIAS--GDISGKVRIWDTVNKE  164 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~l~s--~~~d~~i~vwd~~~~~  164 (423)
                        ......+.++++.  ++...++.+++|++.++ +....+..   ....++++|  .+++.  |+.||+|++||+.+..
T Consensus       100 --~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~  170 (355)
T 3vu4_A          100 --DAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSG  170 (355)
T ss_dssp             --SSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC--
T ss_pred             --CCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCC
Confidence              2334445555543  44445678888888876 66655554   444556666  55555  5788889999886654


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc-eecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS-VGEISGQSKPINSCDFKPSRPFRIITGSEDNT  243 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~  243 (423)
                      .......     .       ++..                   .-.. +..+.+|..+|.+++|+|++.+ +++++.|++
T Consensus       171 ~~~~~~~-----~-------~~~~-------------------~~~p~~~~~~~h~~~v~~~~~s~~g~~-l~s~s~d~~  218 (355)
T 3vu4_A          171 SATTQDQ-----G-------VQQK-------------------AILGKGVLIKAHTNPIKMVRLNRKSDM-VATCSQDGT  218 (355)
T ss_dssp             -----------------------------------------------CCEEECCCSSCEEEEEECTTSSE-EEEEETTCS
T ss_pred             ccccccc-----c-------cccc-------------------ccCcccEEEEccCCceEEEEECCCCCE-EEEEeCCCC
Confidence            3211000     0       0000                   0011 3456788999999999999875 899999998


Q ss_pred             -EEEEcCCCceeeeecc-c-cccCeEEEEECCCCCEEEEEEecCeEEEEECCCcccee--cccc----------------
Q psy13076        244 -IAVFEGPPFKFKMTKQ-E-HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS--ELGN----------------  302 (423)
Q Consensus       244 -i~~~~~~~~~~~~~~~-~-~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~--~~~~----------------  302 (423)
                       |++||....+....+. + |...|.+++|+|+|++|++++.|+.|++||+..+....  .+..                
T Consensus       219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (355)
T 3vu4_A          219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF  298 (355)
T ss_dssp             EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred             EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence             9999998777776766 4 89999999999999999999999999999987653211  1100                


Q ss_pred             ---cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076        303 ---PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       303 ---~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                         ..+......++|+|++++|++++.||.+++|++..++
T Consensus       299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          299 KLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             ECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             EeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence               0111223568999999999999999999999987654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=4.8e-28  Score=235.31  Aligned_cols=330  Identities=13%  Similarity=0.077  Sum_probs=252.2

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeec--CCcceeeccc
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA--KTEYIFATLP   86 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~--~~~~~~~~~~   86 (423)
                      +.+++++|.++++++.|+.|.+||..+ .+++.++..+.. +..++|+|++++|++++.|++|++||+  ++++++..+.
T Consensus       142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t-~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          142 LNDLDLPNLFSVTLRDAGQIALVDGDS-KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CSCCCGGGEEEEEEGGGTEEEEEETTT-CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             ccccCCCCEEEEEEcCCCeEEEEECCC-ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            445778999999999999999999976 566778873333 889999999999999999999999999  8888777765


Q ss_pred             CCCCCCceEEeeCC----CCCeEEEec--CCeEEEEecCCCcccccccC----------Cc-ceEEEEEECCCCC-EEEE
Q psy13076         87 RTQRGQPIVLGGDP----KGKNFLYTN--GNSVIIRNIENPAISDIYTE----------HS-CAVNVAKYSPSGF-YIAS  148 (423)
Q Consensus        87 ~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~----------h~-~~i~~~~~sp~~~-~l~s  148 (423)
                      .  ...+..+.++|    +|+.++..+  ++.+.+||..+.++...+..          |. ..+..+.++|++. ++++
T Consensus       220 ~--g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs  297 (543)
T 1nir_A          220 I--GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  297 (543)
T ss_dssp             C--CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             c--CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence            3  23355678899    998877654  68999999998888776654          33 3788999999765 5567


Q ss_pred             EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccC----CCcceeE
Q psy13076        149 GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG----QSKPINS  224 (423)
Q Consensus       149 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~  224 (423)
                      ...+++|.+||..+.+.+..... .....+.+++|+|+++++++++.... ...+|+..+++.+..+..    |......
T Consensus       298 ~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~-~v~v~D~~tg~l~~~i~~g~~ph~g~g~~  375 (543)
T 1nir_A          298 VKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSN-KVAVIDSKDRRLSALVDVGKTPHPGRGAN  375 (543)
T ss_dssp             ETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGT-EEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred             ECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCC-eEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence            78899999999987554332222 23456788999999999887765433 356788888877666553    3222222


Q ss_pred             EEEecCCCeeEEEEe-CCCeEEEEcCCC-------ceeeeeccccccCeEEEEECCCCCEEEEEE-------ecCeEEEE
Q psy13076        225 CDFKPSRPFRIITGS-EDNTIAVFEGPP-------FKFKMTKQEHSRFVQAVRYSPSGSHFASAG-------FDGKVFLY  289 (423)
Q Consensus       225 ~~~~~~~~~~~~s~s-~d~~i~~~~~~~-------~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-------~dg~i~vw  289 (423)
                      + ++|++...+++++ .|++|.+|+..+       ++...++..+...+..++++|+|++|++++       .++.|.+|
T Consensus       376 ~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~  454 (543)
T 1nir_A          376 F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF  454 (543)
T ss_dssp             E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred             c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEE
Confidence            2 4677555577775 689999999876       777778888877788899999999999987       37899999


Q ss_pred             ECCCccce-ecccc------cccCCCeEEEEECCCCCeEEEEe-----CCCcEEEEecCCcceeeeee
Q psy13076        290 DGASADLV-SELGN------PAHKGGVYAVAWKPDGTQLLTAS-----GDKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       290 d~~~~~~~-~~~~~------~~~~~~i~~l~~~~~~~~l~s~s-----~d~~i~iwd~~~~~~i~~~~  345 (423)
                      |..+++.. ..+..      ..+...+..+.|+|+|+.|..+.     .|++|.|||.+++++++.+.
T Consensus       455 d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          455 DLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             ETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             ECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            99988866 33311      23467789999999999888663     47999999999999877654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.97  E-value=5.6e-28  Score=253.55  Aligned_cols=359  Identities=14%  Similarity=0.070  Sum_probs=256.8

Q ss_pred             cccccCceeEEEEeCCCCeEEEecCCCceEEeecCC-cceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076         43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT-EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP  121 (423)
Q Consensus        43 ~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (423)
                      +.+|.+.+.++.|+++ .++++++.|+++++|.+.. +.....+..+.  ......++|+|+.+++..+..+.+|+++..
T Consensus       199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~~~~~i~~~d~~~~  275 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFSKGGSIYIFNPDTE  275 (1045)
T ss_dssp             EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEEETTEEEEECTTTC
T ss_pred             CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEEeCCEEEEecCCce
Confidence            4568888999999988 7778888999999998653 22222222211  233457789999888888889999998544


Q ss_pred             cccccccC-----------CcceEEEEEEC-CCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCC-CeeEEEECCCCC
Q psy13076        122 AISDIYTE-----------HSCAVNVAKYS-PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG-PIKDIAWSPDNQ  188 (423)
Q Consensus       122 ~~~~~~~~-----------h~~~i~~~~~s-p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~~~  188 (423)
                      .+. .+.+           |...+..++|+ |||+++++++ ++.|.+|+...++...   ...+.. .+..++|+ ||+
T Consensus       276 ~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~s-dg~  349 (1045)
T 1k32_A          276 KIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK---VPEPLRIRYVRRGGD-TKV  349 (1045)
T ss_dssp             CEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE---CSCCSCEEEEEECSS-SEE
T ss_pred             Eee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE---ccCCCcceEEeeeEc-CCC
Confidence            443 3443           44568899999 9999999887 7899999987665332   223344 78899999 999


Q ss_pred             eEEEEEcCCceeeE-EEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEE
Q psy13076        189 RMVVVGEGRERFGH-VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQA  267 (423)
Q Consensus       189 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~  267 (423)
                      .++.++. . .... ++....+. ...+..+...+..++|+|++.. +++++.++.+++|+....+.......|...+..
T Consensus       350 ~l~~~s~-~-~~l~~~~d~~~~~-~~~l~~~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~  425 (1045)
T 1k32_A          350 AFIHGTR-E-GDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKPTVIERSREAMITD  425 (1045)
T ss_dssp             EEEEEET-T-EEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred             eEEEEEC-C-CceEEEEECCCCC-ceEecCCccceeeeEECCCCCE-EEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence            9988876 2 2222 34444433 3344466678999999999986 778889999999998777666556577888899


Q ss_pred             EEECCCCCEEEEEEecC----------eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076        268 VRYSPSGSHFASAGFDG----------KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       268 l~~s~~g~~l~s~s~dg----------~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~  337 (423)
                      ++|+|||++|++++.++          .|++||..+++ ...+.  .|...+..++|+|+|++|+.++.++..++|+...
T Consensus       426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~--~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee--CCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            99999999999888765          89999998876 44443  4667788999999999999999988888887543


Q ss_pred             cceeee-------------------------------e----------ee-CceeEeeEEEEEecCcEEEE---------
Q psy13076        338 KSAVSE-------------------------------F----------LM-GNQVEDQQVSCLWQGDYLLT---------  366 (423)
Q Consensus       338 ~~~i~~-------------------------------~----------~~-~~~~~~~~~~~~~~g~~l~~---------  366 (423)
                      ......                               +          .. ........+.+.++|..++.         
T Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~  582 (1045)
T 1k32_A          503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA  582 (1045)
T ss_dssp             SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred             cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence            322000                               0          00 00111233455667776664         


Q ss_pred             ----EeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        367 ----VSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       367 ----~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                          ......+..||..+...  ..+.   ..+.+++||||+++|++++.| .|++||+++
T Consensus       583 ~~~~~~~~~~l~~~d~~~~~~--~~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~  637 (1045)
T 1k32_A          583 YYQGAPEKGVLLKYDVKTRKV--TEVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLE  637 (1045)
T ss_dssp             HHHCCCCCEEEEEEETTTCCE--EEEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred             cccccCCCceEEEEECCCCcE--EEee---cCcceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence                11234678888877543  3333   668999999999999998877 899999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.97  E-value=6.1e-28  Score=253.26  Aligned_cols=389  Identities=13%  Similarity=0.038  Sum_probs=276.2

Q ss_pred             ceeeEEEEeCCEEEEEecc------ceEEEEeccCCCCceeecccccCce-------eEEEEeCCCCeEEEecCC-----
Q psy13076          7 DQQVSCLWQGDYLLTVSLS------GFISYLDVNNPSTPIRVIKGHNKPI-------TALALSPDRGTVFTGSHD-----   68 (423)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~d------g~i~~~d~~~~~~~~~~~~gh~~~V-------~~l~~~~~~~~l~sg~~D-----   68 (423)
                      ...++++|||++||.++.+      ..|++||+..  .....+.+|...+       ..++|+||++++++++.+     
T Consensus        55 v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~  132 (1045)
T 1k32_A           55 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN--GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSS  132 (1045)
T ss_dssp             EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT--TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTT
T ss_pred             ccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC--CCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcc
Confidence            3567777899999998754      4799999864  3366888999888       999999999988888755     


Q ss_pred             -CceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec-------------CCeEEEEecCCCcccccccCCcceE
Q psy13076         69 -GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-------------GNSVIIRNIENPAISDIYTEHSCAV  134 (423)
Q Consensus        69 -~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~~~h~~~i  134 (423)
                       ..|..|+++++........    ....+.++| | .++...             +....+|....+.....+.+|...+
T Consensus       133 ~~~l~~~~~~~g~~~~l~~~----~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v  206 (1045)
T 1k32_A          133 MTCLYRVENDGINFVPLNLG----PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHV  206 (1045)
T ss_dssp             CCEEEEEEGGGTEEEECCSC----SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCC
T ss_pred             cceEEEEECCCCCeEEecCC----CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcc
Confidence             3577788877654332221    112344667 6 444321             2234555432222233448899999


Q ss_pred             EEEEECCCCCEEEEEccCCcEEEEEcCC-CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee
Q psy13076        135 NVAKYSPSGFYIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG  213 (423)
Q Consensus       135 ~~~~~sp~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (423)
                      ..+.|+++ .++++++.|++++||.+.. ......  +..+ ..+...+|+|||+.++.....   ...++.. ....+.
T Consensus       207 ~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~--l~~~-~~~~~~~~SpDG~~la~~~~~---~i~~~d~-~~~~l~  278 (1045)
T 1k32_A          207 SSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRK--HTSF-TDYYPRHLNTDGRRILFSKGG---SIYIFNP-DTEKIE  278 (1045)
T ss_dssp             EEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEE--CCCC-CSSCEEEEEESSSCEEEEETT---EEEEECT-TTCCEE
T ss_pred             cceEEeCC-EEEEEEeccCceEEEEEeCCCCcceE--ecCC-CCcceeeEcCCCCEEEEEeCC---EEEEecC-CceEee
Confidence            99999998 6777888899999998653 211111  1111 235678999999988886422   2233433 222233


Q ss_pred             cccC-----------CCcceeEEEEe-cCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc-CeEEEEECCCCCEEEEE
Q psy13076        214 EISG-----------QSKPINSCDFK-PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR-FVQAVRYSPSGSHFASA  280 (423)
Q Consensus       214 ~~~~-----------~~~~i~~~~~~-~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~s~  280 (423)
                      .+..           +...+..++|+ |++.. ++.++ ++.+.+|+....... ....+.. .+..++|+ +|+.++.+
T Consensus       279 ~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~  354 (1045)
T 1k32_A          279 KIEIGDLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHG  354 (1045)
T ss_dssp             ECCCCCCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEE
T ss_pred             eeccCcccccccccccccccceeeecCCCCCE-EEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEE
Confidence            3333           23368899999 99876 45555 789999987654433 2445555 78999999 99999999


Q ss_pred             EecCeEE-EEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEe
Q psy13076        281 GFDGKVF-LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW  359 (423)
Q Consensus       281 s~dg~i~-vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~  359 (423)
                      +.++.+. +|+...++.. .+.  .|...+..++|+|||++|++++.++.|++||+.+++...... .+......+..++
T Consensus       355 s~~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~Sp  430 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISD  430 (1045)
T ss_dssp             ETTEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECT
T ss_pred             ECCCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-CCCCCccceEECC
Confidence            9888899 9998776543 333  467789999999999999999999999999999887654432 2222234566778


Q ss_pred             cCcEEEEEeCCC----------cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        360 QGDYLLTVSLSG----------FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       360 ~g~~l~~~~~~~----------~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      +|++|++++.++          .+++||+.+..  ...+..|...+.+++|+||+++|++++.++..+.|+.
T Consensus       431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             CCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence            999998876643          89999998753  5677889999999999999999999999888888864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2e-29  Score=224.03  Aligned_cols=231  Identities=11%  Similarity=0.055  Sum_probs=165.9

Q ss_pred             ccCceeEEEEeCC----CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec-CC
Q psy13076         46 HNKPITALALSPD----RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI-EN  120 (423)
Q Consensus        46 h~~~V~~l~~~~~----~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~  120 (423)
                      |.++|++|+|+|+    ++++++++.+  +++|++.+++++.....                    ..+..+++|++ ++
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~--------------------g~d~~V~~~~~s~d  167 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGT--------------------LSDQQVEVMTFAED  167 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESS--------------------STTCEEEEEEECTT
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEeccc--------------------CCCCcEEEEEECCC
Confidence            5779999999999    9999998855  88898866544332100                    02567888888 45


Q ss_pred             CcccccccCCcceEEEEEECC---CCCEEEEEccCCcEEEEEcCCCceeEEeeecC-CCCCeeEEEECCCCCeEEEEEcC
Q psy13076        121 PAISDIYTEHSCAVNVAKYSP---SGFYIASGDISGKVRIWDTVNKEHILKNEFHP-IGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                      ++....+.+|...++.++|+|   ++.+|++++.|++|||||+++++.+.....+. ....+.+++|+|+|+.+++.+.+
T Consensus       168 G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~  247 (356)
T 2w18_A          168 GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHP  247 (356)
T ss_dssp             SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--
T ss_pred             CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccC
Confidence            777778889999999999999   78999999999999999999888665443221 22467788999999887765421


Q ss_pred             CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec-----cccccCeEEEEEC
Q psy13076        197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-----QEHSRFVQAVRYS  271 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~-----~~~~~~i~~l~~s  271 (423)
                      .                                 ....+++|+.|+++++|+....+.....     .+|...+.+..+ 
T Consensus       248 ~---------------------------------~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~-  293 (356)
T 2w18_A          248 C---------------------------------AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV-  293 (356)
T ss_dssp             -------------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE-
T ss_pred             C---------------------------------CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc-
Confidence            1                                 1123789999999999997766543322     344444333333 


Q ss_pred             CCCCEEEEEEecCeEEEEECCCccceecccccccCCCeE-EEEECCCCCeEEEEeCCCcEEEEec
Q psy13076        272 PSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVY-AVAWKPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       272 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~s~s~d~~i~iwd~  335 (423)
                       ++.++++|+.|++|++||+.+++.+.++.  +|...+. .++|+|||++|++|+.|++|||||+
T Consensus       294 -sg~~lASgS~DgTIkIWDl~tGk~l~tL~--gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          294 -KDHCAAAILTSGTIAIWDLLLGQCTALLP--PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -ETTEEEEEETTSCEEEEETTTCSEEEEEC--CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             -CCCEEEEEcCCCcEEEEECCCCcEEEEec--CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence             37789999999999999999999988874  4666544 6899999999999999999999995

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=2e-27  Score=231.03  Aligned_cols=321  Identities=15%  Similarity=0.129  Sum_probs=239.4

Q ss_pred             EEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcce
Q psy13076         54 ALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA  133 (423)
Q Consensus        54 ~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~  133 (423)
                      +|+|++.++++++.|++|.+||..+++++..+.                                         .+|.  
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~-----------------------------------------~g~~--  180 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-----------------------------------------TGYA--  180 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEE-----------------------------------------CSTT--
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEe-----------------------------------------cCcc--
Confidence            388999999999999999999998876654331                                         1233  


Q ss_pred             EEEEEECCCCCEEEEEccCCcEEEEEc--CCCceeEEeeecCCCCCeeEEEECC----CCCeEEEEEcCCceeeEEEeec
Q psy13076        134 VNVAKYSPSGFYIASGDISGKVRIWDT--VNKEHILKNEFHPIGGPIKDIAWSP----DNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       134 i~~~~~sp~~~~l~s~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~v~~v~~s~----~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      ++.++|+|||+++++++.|++|++||+  .+.+......   ....+..++|+|    +|+++++++.... ...+|+..
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~-~v~v~D~~  256 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---IGIEARSVESSKFKGYEDRYTIAGAYWPP-QFAIMDGE  256 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEESS-EEEEEETT
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe---cCCCcceEEeCCCcCCCCCEEEEEEccCC-eEEEEecc
Confidence            778999999999999999999999999  6655443222   245678999999    9999988764333 24677777


Q ss_pred             CCcceecccCC-----------CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee-eccccccCeEEEEECCCCC
Q psy13076        208 TGTSVGEISGQ-----------SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM-TKQEHSRFVQAVRYSPSGS  275 (423)
Q Consensus       208 ~~~~~~~~~~~-----------~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~-~~~~~~~~i~~l~~s~~g~  275 (423)
                      +.+.+..+...           ...+..+.++|+++..+++...++.|.+|+....+... ....+...+..++|+|+|+
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~  336 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR  336 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence            77766665532           22578899999988888888899999999976533211 1223455677899999999


Q ss_pred             EEEEEE-ecCeEEEEECCCccceecccc--cccCCCeEEEEECCC-CCeEEEEe-CCCcEEEEecCC-------cceeee
Q psy13076        276 HFASAG-FDGKVFLYDGASADLVSELGN--PAHKGGVYAVAWKPD-GTQLLTAS-GDKTCKLWDIET-------KSAVSE  343 (423)
Q Consensus       276 ~l~s~s-~dg~i~vwd~~~~~~~~~~~~--~~~~~~i~~l~~~~~-~~~l~s~s-~d~~i~iwd~~~-------~~~i~~  343 (423)
                      ++++++ .++.|.+||.+++++...+..  ..|.+....+ ++|+ ++.++++. .|++|++||+.+       .+++.+
T Consensus       337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence            876655 589999999999988766542  1254444334 4777 66777775 689999999988       777777


Q ss_pred             eeeCceeEeeEEEEEecCcEEEEEe-------CCCcEEEEecCCCCCceEEe--------ccCCCceeEEEecCCCCeEE
Q psy13076        344 FLMGNQVEDQQVSCLWQGDYLLTVS-------LSGFISYLDVNNPSTPIRVI--------KGHNKPITALALSPDRGTVF  408 (423)
Q Consensus       344 ~~~~~~~~~~~~~~~~~g~~l~~~~-------~~~~i~~~~~~~~~~~~~~~--------~~h~~~v~~i~~sp~~~~l~  408 (423)
                      +.... .....+.+.|+|.+|.+++       .++.|.+||+.+.+.....+        ..|.+.+..++|+|+|+.|.
T Consensus       416 l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~  494 (543)
T 1nir_A          416 LQGQG-GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW  494 (543)
T ss_dssp             EECSC-SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred             EEcCC-CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence            65322 2234466778999999887       26799999999877654443        45678999999999999987


Q ss_pred             Ee-----cCCCcEEEeeCCC
Q psy13076        409 TG-----SHDGFITRWNAKT  423 (423)
Q Consensus       409 s~-----s~D~~i~~W~~~~  423 (423)
                      .+     +.|+.|.+||.+|
T Consensus       495 ~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          495 FSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             EEEECCTTSCCEEEEEETTT
T ss_pred             EEeecCCCCCCeEEEEECCC
Confidence            54     2589999999876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.1e-26  Score=218.90  Aligned_cols=291  Identities=11%  Similarity=0.022  Sum_probs=210.9

Q ss_pred             CEEEEEe----ccc----eEEEEec--cCCCCce--eecccccCceeEEEEeC--------------CCCeEEEecCC--
Q psy13076         17 DYLLTVS----LSG----FISYLDV--NNPSTPI--RVIKGHNKPITALALSP--------------DRGTVFTGSHD--   68 (423)
Q Consensus        17 ~~~~~~~----~dg----~i~~~d~--~~~~~~~--~~~~gh~~~V~~l~~~~--------------~~~~l~sg~~D--   68 (423)
                      .++++++    .||    .|++||+  .++. .+  ..+.+|...+..+++++              .+..++.++.+  
T Consensus        76 ~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~  154 (415)
T 2hqs_A           76 DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT-VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNG  154 (415)
T ss_dssp             CEEEEEEEEECTTSCEEEEEEEEECSSSTTC-EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSS
T ss_pred             CEEEEEEEEECCCCeEEEEEEEEeCCCCCCC-EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCC
Confidence            4666776    457    9999999  7644 44  45889999998888775              15556555543  


Q ss_pred             ----CceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCC
Q psy13076         69 ----GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF  144 (423)
Q Consensus        69 ----~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  144 (423)
                          ++|++||.+.+.                                           ...+.+|...+.+++|+|||+
T Consensus       155 ~~~~~~i~i~d~~g~~-------------------------------------------~~~l~~~~~~v~~~~~Spdg~  191 (415)
T 2hqs_A          155 GQFPYELRVSDYDGYN-------------------------------------------QFVVHRSPQPLMSPAWSPDGS  191 (415)
T ss_dssp             SSCCEEEEEEETTSCS-------------------------------------------CEEEEEESSCEEEEEECTTSS
T ss_pred             CCccceEEEEcCCCCC-------------------------------------------CEEEeCCCCcceeeEEcCCCC
Confidence                688888876421                                           123345777899999999999


Q ss_pred             EEEEEccCC---cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC-ceeeEEEeecCCcceecccCCCc
Q psy13076        145 YIASGDISG---KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR-ERFGHVFMSETGTSVGEISGQSK  220 (423)
Q Consensus       145 ~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  220 (423)
                      ++++++.++   .|++||+.+++...   +..+...+.+++|+|||+.++..+... .....+|+..++. ...+..+..
T Consensus       192 ~la~~s~~~~~~~i~~~d~~tg~~~~---l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~~~l~~~~~  267 (415)
T 2hqs_A          192 KLAYVTFESGRSALVIQTLANGAVRQ---VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRS  267 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEEE---EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSS
T ss_pred             EEEEEEecCCCcEEEEEECCCCcEEE---eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-EEeCcCCCC
Confidence            999999885   99999998876532   233456789999999999988655432 3334455555544 356667778


Q ss_pred             ceeEEEEecCCCeeEEEEeCCC--eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec---CeEEEEECCCcc
Q psy13076        221 PINSCDFKPSRPFRIITGSEDN--TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD---GKVFLYDGASAD  295 (423)
Q Consensus       221 ~i~~~~~~~~~~~~~~s~s~d~--~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~  295 (423)
                      .+.++.|+|++..+++++..++  .|++|+....+.. ....+...+..++|+|+|++|++++.+   ..|++||..+++
T Consensus       268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~  346 (415)
T 2hqs_A          268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  346 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred             cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence            8999999999987454444455  6777786654432 233455678899999999999988875   589999998877


Q ss_pred             ceecccccccCCCeEEEEECCCCCeEEEEeCCC---cEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCc
Q psy13076        296 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK---TCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGF  372 (423)
Q Consensus       296 ~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~---~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  372 (423)
                      .. .+.  .+. .+.+++|+|+|++|++++.++   .|.+||+..+.                                 
T Consensus       347 ~~-~l~--~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~---------------------------------  389 (415)
T 2hqs_A          347 VQ-VLS--STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF---------------------------------  389 (415)
T ss_dssp             EE-ECC--CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC---------------------------------
T ss_pred             EE-Eec--CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc---------------------------------
Confidence            53 343  233 789999999999999988776   67777765321                                 


Q ss_pred             EEEEecCCCCCceEEeccCCCceeEEEecCCCC
Q psy13076        373 ISYLDVNNPSTPIRVIKGHNKPITALALSPDRG  405 (423)
Q Consensus       373 i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~  405 (423)
                                  ...+.+|.+.|++++|+|...
T Consensus       390 ------------~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          390 ------------KARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             ------------EEECCCSSSEEEEEEECCCCC
T ss_pred             ------------EEEeeCCCCCCcCCccccccc
Confidence                        245667888999999999754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=2.4e-25  Score=225.70  Aligned_cols=355  Identities=9%  Similarity=0.065  Sum_probs=235.8

Q ss_pred             cCceeEEEEeCCCCeEEEecC-CC-----ceEEeecCCcceeecccCCCCC-----------------------CceEEe
Q psy13076         47 NKPITALALSPDRGTVFTGSH-DG-----FITRWNAKTEYIFATLPRTQRG-----------------------QPIVLG   97 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~-D~-----~i~vW~~~~~~~~~~~~~~~~~-----------------------~~~~~~   97 (423)
                      ...|.+++|+|||++|++++. |+     +|++||+++++....+......                       ....+.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457999999999999999998 88     9999999988765444322111                       123567


Q ss_pred             eCCCCCeEEEecCCeEEEEecCCCc--ccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCC
Q psy13076         98 GDPKGKNFLYTNGNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG  175 (423)
Q Consensus        98 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  175 (423)
                      ++|+|+.+++.....+.+|+++++.  ....+..|...+..++|+|||++|+.++ ++.|.+||+.+++......  ...
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~--~~~  192 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA--DGS  192 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC--CCC
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc--CCc
Confidence            8999999998888999999998873  3445677888899999999999999987 5699999998765432111  111


Q ss_pred             C----------------CeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe
Q psy13076        176 G----------------PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS  239 (423)
Q Consensus       176 ~----------------~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s  239 (423)
                      .                .+..++|||||+.+++++.+...... +.      ..........+..+.|...+.     ..
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~-~~------~~~~~p~~~~~~~~~~~~~g~-----~~  260 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPV-QK------RYEVYADRTDVIEQRYPAAGD-----AN  260 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCE-EE------EEEECSSCEEEEEEECCBTTS-----CC
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCce-Ee------cCCCCCCcccceEeecCCCCC-----CC
Confidence            1                14779999999999887643321111 10      000111111223333332221     01


Q ss_pred             CCCeEEEEcCCC-ceeeeecc--ccccCeEEEEECCCCCEEEEEEe-----cCeEEEEECCCccceecccccccCC---C
Q psy13076        240 EDNTIAVFEGPP-FKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGF-----DGKVFLYDGASADLVSELGNPAHKG---G  308 (423)
Q Consensus       240 ~d~~i~~~~~~~-~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~---~  308 (423)
                      ....|++|+... .+......  .+...+..++| |||++|++++.     +..|++||..+++....+.. ....   .
T Consensus       261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~  338 (741)
T 2ecf_A          261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSPTWVPL  338 (741)
T ss_dssp             CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECSSCCCC
T ss_pred             CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCCCcCCc
Confidence            112577778655 44332221  46677899999 99999988765     56899999998876544432 1112   3


Q ss_pred             eEEEEECCCCCeEEEEeCCCcEEEEecC-CcceeeeeeeCceeEeeEE-EEEecCcEEEEE-eCCC--cEEEEecCCCCC
Q psy13076        309 VYAVAWKPDGTQLLTASGDKTCKLWDIE-TKSAVSEFLMGNQVEDQQV-SCLWQGDYLLTV-SLSG--FISYLDVNNPST  383 (423)
Q Consensus       309 i~~l~~~~~~~~l~s~s~d~~i~iwd~~-~~~~i~~~~~~~~~~~~~~-~~~~~g~~l~~~-~~~~--~i~~~~~~~~~~  383 (423)
                      +..++|+|||+++++++.|+.++||.+. .++ ...+..+ ......+ ..+++|+.++.. +.++  .+++|++.....
T Consensus       339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~-~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~  416 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG-NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG  416 (741)
T ss_dssp             CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS-SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred             CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec-ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence            4578999999999999999988888775 333 4443322 2222233 467789887654 4454  788998865344


Q ss_pred             ceEEeccCCCceeEEEecCCCCeEEEecCC----CcEEEeeC
Q psy13076        384 PIRVIKGHNKPITALALSPDRGTVFTGSHD----GFITRWNA  421 (423)
Q Consensus       384 ~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D----~~i~~W~~  421 (423)
                      ....+.+ ...+.+++||||+++|+....+    ..+.+|+.
T Consensus       417 ~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          417 QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            3455555 6778999999999998765433    45777764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=3.2e-26  Score=231.51  Aligned_cols=348  Identities=12%  Similarity=0.090  Sum_probs=224.2

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccC---ceeEEEEeCCCCeEEEecCC---------CceEEee
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK---PITALALSPDRGTVFTGSHD---------GFITRWN   75 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~---~V~~l~~~~~~~~l~sg~~D---------~~i~vW~   75 (423)
                      ..+++++||+++++ +.||.|++||+.++ +....+.+|..   .|.+++|||||++|++++.|         +.+++||
T Consensus        20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g-~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           20 PEAKWISDTEFIYR-EQKGTVRLWNVETN-TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCBSSSSCBCCC-CSSSCEEEBCGGGC-CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             cccEEcCCCcEEEE-eCCCCEEEEECCCC-cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            44566679998876 89999999999864 45567777765   49999999999999998875         5666888


Q ss_pred             cCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcE
Q psy13076         76 AKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKV  155 (423)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i  155 (423)
                      +++++.. .+                                       ....+|...+..++|||||++||+++. +.|
T Consensus        98 ~~~~~~~-~l---------------------------------------~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i  136 (723)
T 1xfd_A           98 IPHGDPQ-SL---------------------------------------DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNI  136 (723)
T ss_dssp             SSSCCCE-EC---------------------------------------CCTTCCSCCCSBCCBCSSTTCEEEEET-TEE
T ss_pred             CCCCceE-ec---------------------------------------cCCccccccccccEECCCCCEEEEEEC-CeE
Confidence            7765431 11                                       011234455777899999999999875 799


Q ss_pred             EEEEcCCCceeEEeeecCC----------------CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCC
Q psy13076        156 RIWDTVNKEHILKNEFHPI----------------GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQS  219 (423)
Q Consensus       156 ~vwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (423)
                      ++||..+++..........                ...+.+++|||||+.+++++...... .++......     ....
T Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~-~~~~~~~~~-----~~~~  210 (723)
T 1xfd_A          137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV-PIMELPTYT-----GSIY  210 (723)
T ss_dssp             EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS-CEEEECCCS-----SSSS
T ss_pred             EEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCcc-ceEEeeccC-----CcCC
Confidence            9999987654322211110                01237899999999998876443211 112111100     0112


Q ss_pred             cceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc------cccCeEEEEECCCCCEEEEEEe----cCeEEEE
Q psy13076        220 KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE------HSRFVQAVRYSPSGSHFASAGF----DGKVFLY  289 (423)
Q Consensus       220 ~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~------~~~~i~~l~~s~~g~~l~s~s~----dg~i~vw  289 (423)
                      ..+..+.|.+.+..     ..+..+++|+....+....+..      +...+..++|+|||+++++.+.    +..|++|
T Consensus       211 ~~~~~~~~~~~G~~-----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~  285 (723)
T 1xfd_A          211 PTVKPYHYPKAGSE-----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC  285 (723)
T ss_dssp             CCCEEEECCBTTSC-----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred             CcceeccCCCCCCC-----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEE
Confidence            23566777766532     3345799999765543233332      2567889999999998877654    3579999


Q ss_pred             ECCCccceecccccccCCCe----EEEEECCCCCeEEE--EeCCC------cEEEEe-cCCcc--eeeeeeeCceeEeeE
Q psy13076        290 DGASADLVSELGNPAHKGGV----YAVAWKPDGTQLLT--ASGDK------TCKLWD-IETKS--AVSEFLMGNQVEDQQ  354 (423)
Q Consensus       290 d~~~~~~~~~~~~~~~~~~i----~~l~~~~~~~~l~s--~s~d~------~i~iwd-~~~~~--~i~~~~~~~~~~~~~  354 (423)
                      |..+++....+.. .+.+.+    ..++|+|||+.|+.  +..++      .|.+|| ...++  +...+..+.......
T Consensus       286 d~~~g~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~  364 (723)
T 1xfd_A          286 DATTGVCTKKHED-ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI  364 (723)
T ss_dssp             ETTTCCEEEEEEE-ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred             eCCCCcceEEEEe-ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEee
Confidence            9988876543321 233433    37899999997775  45666      466677 33333  033332221111122


Q ss_pred             EEEEecCcEEEEEeCC---CcEEEEecCCCCC-ceEEecc---CCCceeEEEecCCCCeEEEe
Q psy13076        355 VSCLWQGDYLLTVSLS---GFISYLDVNNPST-PIRVIKG---HNKPITALALSPDRGTVFTG  410 (423)
Q Consensus       355 ~~~~~~g~~l~~~~~~---~~i~~~~~~~~~~-~~~~~~~---h~~~v~~i~~sp~~~~l~s~  410 (423)
                      ...+++|+.|+..+.+   +.+.+|++..... ....+..   |...+..++|+||+++|+..
T Consensus       365 ~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             eEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence            4567799999866554   7788888764332 2233443   67789999999999988754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=3.2e-25  Score=224.82  Aligned_cols=320  Identities=11%  Similarity=0.081  Sum_probs=227.1

Q ss_pred             eeEEEEeCCEEEEEec-cc-----eEEEEeccCCCCceeecccccC------------------------ceeEEEEeCC
Q psy13076          9 QVSCLWQGDYLLTVSL-SG-----FISYLDVNNPSTPIRVIKGHNK------------------------PITALALSPD   58 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~-dg-----~i~~~d~~~~~~~~~~~~gh~~------------------------~V~~l~~~~~   58 (423)
                      .+++++||++|++++. ||     .|++||+.++ +....+..|..                        .|.+++|+||
T Consensus        41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD  119 (741)
T 2ecf_A           41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD  119 (741)
T ss_dssp             EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEECGGGTC--------------------CCEESCCCEECTT
T ss_pred             CceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence            4667779999999998 88     9999999763 44545554433                        3899999999


Q ss_pred             CCeEEEecCCCceEEeecCCc---ceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcce--
Q psy13076         59 RGTVFTGSHDGFITRWNAKTE---YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA--  133 (423)
Q Consensus        59 ~~~l~sg~~D~~i~vW~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~--  133 (423)
                      +++|++++. +.|++||+.++   .+.. +.. .......+.++|+|+.+++..+..+.+|++++++.......+...  
T Consensus       120 g~~l~~~~~-~~i~~~d~~~~~~~~~~~-l~~-~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  196 (741)
T 2ecf_A          120 AQRLLFPLG-GELYLYDLKQEGKAAVRQ-LTH-GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIG  196 (741)
T ss_dssp             SSEEEEEET-TEEEEEESSSCSTTSCCB-CCC-SSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEE
T ss_pred             CCEEEEEeC-CcEEEEECCCCCcceEEE-ccc-CCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCcccee
Confidence            999999886 99999999987   4432 221 223455678999999999888889999999988776665555432  


Q ss_pred             --------------EEEEEECCCCCEEEEEccCC---------------------------------cEEEEEcCC-Cce
Q psy13076        134 --------------VNVAKYSPSGFYIASGDISG---------------------------------KVRIWDTVN-KEH  165 (423)
Q Consensus       134 --------------i~~~~~sp~~~~l~s~~~d~---------------------------------~i~vwd~~~-~~~  165 (423)
                                    +..+.|+|||++|++++.|+                                 .|.+||+.+ ++.
T Consensus       197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~  276 (741)
T 2ecf_A          197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT  276 (741)
T ss_dssp             ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC
T ss_pred             ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce
Confidence                          46789999999999988775                                 788999877 654


Q ss_pred             eEEeeecCCCCCeeEEEECCCCCeEEEEEcC---CceeeEEEeecCCcceecccCCCc----ceeEEEEecCCCeeEEEE
Q psy13076        166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEG---RERFGHVFMSETGTSVGEISGQSK----PINSCDFKPSRPFRIITG  238 (423)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~s~  238 (423)
                      ........+...+..++| |||+.+++....   ......+++..++.....+..+..    .+..+.|+|++. .++++
T Consensus       277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~  354 (741)
T 2ecf_A          277 QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSS  354 (741)
T ss_dssp             EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEE
T ss_pred             EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEe
Confidence            322111123456889999 999999887642   233344555555554443333222    456889999998 57888


Q ss_pred             eCCCeEEEEcCC-CceeeeeccccccCeEEE-EECCCCCEEEE-EEecC--eEEEEECCC-ccceecccccccCCCeEEE
Q psy13076        239 SEDNTIAVFEGP-PFKFKMTKQEHSRFVQAV-RYSPSGSHFAS-AGFDG--KVFLYDGAS-ADLVSELGNPAHKGGVYAV  312 (423)
Q Consensus       239 s~d~~i~~~~~~-~~~~~~~~~~~~~~i~~l-~~s~~g~~l~s-~s~dg--~i~vwd~~~-~~~~~~~~~~~~~~~i~~l  312 (423)
                      +.++...+|... ... ...+..+...+..+ .|+|+|+.++. ++.++  .+++|+... +.....+.   ....+..+
T Consensus       355 ~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~---~~~~~~~~  430 (741)
T 2ecf_A          355 ERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS---KAPGMHSA  430 (741)
T ss_dssp             CTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC---CSCSEEEE
T ss_pred             cCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc---cCCCceEE
Confidence            888876666432 122 44555566667776 59999997755 44455  889998764 44444553   24567899


Q ss_pred             EECCCCCeEEEEeCC----CcEEEEecCCc
Q psy13076        313 AWKPDGTQLLTASGD----KTCKLWDIETK  338 (423)
Q Consensus       313 ~~~~~~~~l~s~s~d----~~i~iwd~~~~  338 (423)
                      +|+|+|++|+....+    ..+.+|+...+
T Consensus       431 ~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          431 SFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             EECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            999999988876544    46888887544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2.3e-23  Score=196.29  Aligned_cols=250  Identities=15%  Similarity=0.156  Sum_probs=186.4

Q ss_pred             CCEEEEEecc------ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCC---ceEEeecCCcceeeccc
Q psy13076         16 GDYLLTVSLS------GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG---FITRWNAKTEYIFATLP   86 (423)
Q Consensus        16 ~~~~~~~~~d------g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~---~i~vW~~~~~~~~~~~~   86 (423)
                      +..++.++.+      +.|++||++.  .....+.+|.+.|.+++|+|++++|++++.|+   .|++||+++++...   
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~---  217 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---  217 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCC--CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE---
Confidence            6677777775      8999999863  44678889999999999999999999999885   99999998764321   


Q ss_pred             CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCc--EEEEEcCCC
Q psy13076         87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGK--VRIWDTVNK  163 (423)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~--i~vwd~~~~  163 (423)
                                                              +..|...+.+++|+|||++|+ +++.++.  |.+||+.++
T Consensus       218 ----------------------------------------l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~  257 (415)
T 2hqs_A          218 ----------------------------------------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG  257 (415)
T ss_dssp             ----------------------------------------EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             ----------------------------------------eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence                                                    223556788999999999888 6666654  999999876


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc-eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC--
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE-RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE--  240 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~--  240 (423)
                      +..   .+..+...+.+++|+|||+.+++.+.... ....+++...+. ...+..+...+..++|+|++.+++.++..  
T Consensus       258 ~~~---~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g  333 (415)
T 2hqs_A          258 QIR---QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGG  333 (415)
T ss_dssp             CEE---ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             CEE---eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-EEEEecCCCcccCeEECCCCCEEEEEECcCC
Confidence            542   23344567899999999999988875332 223334444443 34455566788899999999875555444  


Q ss_pred             CCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC---eEEEEECCCccceecccccccCCCeEEEEECCC
Q psy13076        241 DNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG---KVFLYDGASADLVSELGNPAHKGGVYAVAWKPD  317 (423)
Q Consensus       241 d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~  317 (423)
                      +..|++|+....+.. .+..+. .+.+++|+|+|++|++++.++   .|++||... +....+  ..|.+.|.+++|+|.
T Consensus       334 ~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l--~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          334 QQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARL--PATDGQVKFPAWSPY  408 (415)
T ss_dssp             CEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEEC--CCSSSEEEEEEECCC
T ss_pred             ceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEe--eCCCCCCcCCccccc
Confidence            358999998765543 333443 789999999999999999887   799999864 444555  358889999999996


Q ss_pred             CC
Q psy13076        318 GT  319 (423)
Q Consensus       318 ~~  319 (423)
                      ..
T Consensus       409 ~~  410 (415)
T 2hqs_A          409 LH  410 (415)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=8.6e-24  Score=213.18  Aligned_cols=317  Identities=15%  Similarity=0.196  Sum_probs=215.8

Q ss_pred             EEEeCCEEEEEeccceEEEEeccCCCCceeeccccc-----------------CceeEEEEeCCCCeEEEecCCCceEEe
Q psy13076         12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN-----------------KPITALALSPDRGTVFTGSHDGFITRW   74 (423)
Q Consensus        12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~-----------------~~V~~l~~~~~~~~l~sg~~D~~i~vW   74 (423)
                      +.|-|+.++.++.|| | +||+.++......+..|.                 .+|.+++|+|+ +.++.+ .|++|++|
T Consensus        31 ~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~  106 (706)
T 2z3z_A           31 LQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGF  106 (706)
T ss_dssp             CEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEE
T ss_pred             CcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEE
Confidence            345477788888888 8 999986543103444443                 57999999999 555444 45999999


Q ss_pred             ecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC-----CcccccccCCcce--------------EE
Q psy13076         75 NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTEHSCA--------------VN  135 (423)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~h~~~--------------i~  135 (423)
                      |+.+++.......  ......+.++|+|+.+++..+..+.+|++++     ++.......+...              +.
T Consensus       107 d~~~~~~~~l~~~--~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~  184 (706)
T 2z3z_A          107 DMLARKVTYLFDT--NEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEK  184 (706)
T ss_dssp             ETTTTEEEEEECC--TTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCC
T ss_pred             ECCCCceEEccCC--cccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCc
Confidence            9998876543322  2223345789999999998889999999998     7766655544443              47


Q ss_pred             EEEECCCCCEEEEEc---------------------------------cCCcEEEEEcCCCceeEEeeecCCCCCeeEEE
Q psy13076        136 VAKYSPSGFYIASGD---------------------------------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA  182 (423)
Q Consensus       136 ~~~~sp~~~~l~s~~---------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~  182 (423)
                      .+.|+|||++|++++                                 .+..|.+||+.+++.............+..++
T Consensus       185 ~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  264 (706)
T 2z3z_A          185 GTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS  264 (706)
T ss_dssp             SEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred             eEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence            899999999999987                                 34679999998766432221122345688999


Q ss_pred             ECCCCCeEEEEEcCCc---eeeEEEeecCCcceeccc--CCC---cceeEEEEec--CCCeeEEEEeCCCeEEEEcCC-C
Q psy13076        183 WSPDNQRMVVVGEGRE---RFGHVFMSETGTSVGEIS--GQS---KPINSCDFKP--SRPFRIITGSEDNTIAVFEGP-P  251 (423)
Q Consensus       183 ~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~---~~i~~~~~~~--~~~~~~~s~s~d~~i~~~~~~-~  251 (423)
                      |+|||+.+++......   ....+++..++.....+.  .+.   ..+..+.|+|  ++.+ +++++.++.+.+|... .
T Consensus       265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~-l~~~~~~g~~~l~~~~~~  343 (706)
T 2z3z_A          265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF-IWQSRRDGWNHLYLYDTT  343 (706)
T ss_dssp             ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE-EEEECTTSSCEEEEEETT
T ss_pred             EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE-EEEEccCCccEEEEEECC
Confidence            9999999888764431   234556655553333222  111   1246789999  8874 7788888888888643 2


Q ss_pred             ceeeeeccccccCeEE-EEECCCCCEEEEEEe-cC----eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076        252 FKFKMTKQEHSRFVQA-VRYSPSGSHFASAGF-DG----KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS  325 (423)
Q Consensus       252 ~~~~~~~~~~~~~i~~-l~~s~~g~~l~s~s~-dg----~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s  325 (423)
                      ......+..+...+.. ++|+|+|+.|+.++. ++    .|+.||..+++ ...+.   +...+.+++|+|+|++|+..+
T Consensus       344 ~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~---~~~~~~~~~~spdg~~l~~~~  419 (706)
T 2z3z_A          344 GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT---PESGMHRTQLSPDGSAIIDIF  419 (706)
T ss_dssp             SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC---CSSSEEEEEECTTSSEEEEEE
T ss_pred             CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc---CCCceEEEEECCCCCEEEEEe
Confidence            3333444555666765 799999998766554 44    67778877665 33332   566789999999999888765


Q ss_pred             CC----CcEEEEecCCcc
Q psy13076        326 GD----KTCKLWDIETKS  339 (423)
Q Consensus       326 ~d----~~i~iwd~~~~~  339 (423)
                      .+    +.+.+||+.+++
T Consensus       420 ~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          420 QSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             ECSSCSCEEEEEESSSCE
T ss_pred             cCCCCCcEEEEEECCCCe
Confidence            44    469999998876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=3.8e-24  Score=191.49  Aligned_cols=258  Identities=17%  Similarity=0.164  Sum_probs=184.0

Q ss_pred             EEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCC-cceeecccCCCCCCceEEeeC
Q psy13076         21 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT-EYIFATLPRTQRGQPIVLGGD   99 (423)
Q Consensus        21 ~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~-~~~~~~~~~~~~~~~~~~~~~   99 (423)
                      .++.|+.|++||+.+.  ....+.+|.+.|.+++|+|++++|++++ ++.|++||+++ ++....               
T Consensus        17 ~~~~~~~i~~~d~~~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~---------------   78 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR--KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV---------------   78 (297)
T ss_dssp             -CCCCEEEEEEETTTT--EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC---------------
T ss_pred             CCCcceeEEEEeCCCC--ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe---------------
Confidence            3568899999998752  3446777999999999999999999986 78999999987 543221               


Q ss_pred             CCCCeEEEecCCeEEEEecCCCcccccccCC-cceEEEEEECCCCCEEEEEc--cCCcEEEEEc--CCCceeEEeeecCC
Q psy13076        100 PKGKNFLYTNGNSVIIRNIENPAISDIYTEH-SCAVNVAKYSPSGFYIASGD--ISGKVRIWDT--VNKEHILKNEFHPI  174 (423)
Q Consensus       100 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~l~s~~--~d~~i~vwd~--~~~~~~~~~~~~~~  174 (423)
                                                 +.+| ...+..++|+|+++++++++  .++..+||.+  .+++..   .+. .
T Consensus        79 ---------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~---~~~-~  127 (297)
T 2ojh_A           79 ---------------------------DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR---LMT-K  127 (297)
T ss_dssp             ---------------------------CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE---ECC-S
T ss_pred             ---------------------------ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE---Eee-c
Confidence                                       1122 24567789999999999988  4456666655  333321   111 2


Q ss_pred             CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC-CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC-Cc
Q psy13076        175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-PF  252 (423)
Q Consensus       175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~-~~  252 (423)
                      ...+..++|+|+++.++..+..... ..+|..+. +.....+..+...+.++.|+|++..+++++..++.+.+|... ..
T Consensus       128 ~~~~~~~~~spdg~~l~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~  206 (297)
T 2ojh_A          128 NLPSYWHGWSPDGKSFTYCGIRDQV-FDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG  206 (297)
T ss_dssp             SSSEEEEEECTTSSEEEEEEEETTE-EEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCCccceEECCCCCEEEEEECCCCc-eEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC
Confidence            2358889999999998865543332 35555432 334455666677899999999998766666678888888753 22


Q ss_pred             eeeeeccccccCeEEEEECCCCCEEEEEEec-----------CeEEEEECCCccceecccccccCCCeEEEEECCCCCeE
Q psy13076        253 KFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-----------GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL  321 (423)
Q Consensus       253 ~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  321 (423)
                      .....+..+...+..++|+|+|++|++++.+           +.|++||..+++.........|...+..++|+|++++|
T Consensus       207 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  286 (297)
T 2ojh_A          207 SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEF  286 (297)
T ss_dssp             SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEE
T ss_pred             CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEE
Confidence            2233455566778899999999999988876           56999999887653333223567788899999999999


Q ss_pred             EEEeCCC
Q psy13076        322 LTASGDK  328 (423)
Q Consensus       322 ~s~s~d~  328 (423)
                      ++++.+.
T Consensus       287 ~~~~~~~  293 (297)
T 2ojh_A          287 AYVRYFP  293 (297)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            9887764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=4.4e-23  Score=188.34  Aligned_cols=276  Identities=14%  Similarity=0.140  Sum_probs=189.8

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec-CCCceEEeecCCcce-eecccCCCCCCc
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS-HDGFITRWNAKTEYI-FATLPRTQRGQP   93 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~-~D~~i~vW~~~~~~~-~~~~~~~~~~~~   93 (423)
                      +..+++++.++.|++||+.+ .+....+..+..++ .++|+|++++|++++ .++.|++||.+++++ ...         
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~---------   78 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDT-LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA---------   78 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTT-CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE---------
T ss_pred             CEEEEEecCCCeEEEEeCcc-cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe---------
Confidence            45577888999999999976 45555666666677 999999999665554 489999999987653 211         


Q ss_pred             eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCC---cEEEEEcCCCceeEEee
Q psy13076         94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG---KVRIWDTVNKEHILKNE  170 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~  170 (423)
                                                       +..+.....+++|+|+|++++++..++   .|++||..+.+......
T Consensus        79 ---------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~  125 (331)
T 3u4y_A           79 ---------------------------------IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP  125 (331)
T ss_dssp             ---------------------------------EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE
T ss_pred             ---------------------------------cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE
Confidence                                             112223333478999999999655553   89999998776544322


Q ss_pred             ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce----ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076        171 FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV----GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV  246 (423)
Q Consensus       171 ~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~  246 (423)
                         .......++|+|+|++++++.........+|..+....+    .........+..++|+|++.++++++..++.+.+
T Consensus       126 ---~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  202 (331)
T 3u4y_A          126 ---IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGI  202 (331)
T ss_dssp             ---CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ---CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence               234568999999999887776554432345554432222    1112333457899999999887777778999999


Q ss_pred             EcCCCcee---eeeccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccc--eeccccc-----ccCCCeEEEEEC
Q psy13076        247 FEGPPFKF---KMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADL--VSELGNP-----AHKGGVYAVAWK  315 (423)
Q Consensus       247 ~~~~~~~~---~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~--~~~~~~~-----~~~~~i~~l~~~  315 (423)
                      |+....+.   ..... ....+..++|+|+|++++.++ .++.|.+||..+++.  +..+...     ........++|+
T Consensus       203 ~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  281 (331)
T 3u4y_A          203 LETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN  281 (331)
T ss_dssp             EECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC
T ss_pred             EECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEEC
Confidence            99765554   33333 235567899999999776655 578899999988776  2222110     111223568999


Q ss_pred             CCCCeEEEEe-CCCcEEEEecCCcc
Q psy13076        316 PDGTQLLTAS-GDKTCKLWDIETKS  339 (423)
Q Consensus       316 ~~~~~l~s~s-~d~~i~iwd~~~~~  339 (423)
                      |+|++|++++ .++.|++||+....
T Consensus       282 pdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          282 KTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCCEEEEecCCCCcEEEEEecCCc
Confidence            9999886655 46699999998654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=1e-23  Score=188.75  Aligned_cols=238  Identities=13%  Similarity=0.112  Sum_probs=169.7

Q ss_pred             CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC-CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076        129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      .|...|.+++|+|+|+++++++ ++.|++||+.+ ++...... ......+.+++|+|+++.++++....+....+|..+
T Consensus        39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~  116 (297)
T 2ojh_A           39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT-GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP  116 (297)
T ss_dssp             EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC-TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred             cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc-ccccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence            3566789999999999999986 78999999987 65432211 112356788999999999998874433334455543


Q ss_pred             C-CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC--CCceeeeeccccccCeEEEEECCCCCEEEEEE-ec
Q psy13076        208 T-GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG--PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG-FD  283 (423)
Q Consensus       208 ~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~--~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~d  283 (423)
                      . +.....+..+ ..+..+.|+|++..++++++.++.+.+|+.  .... ......+...+.+++|+|+|++++.++ .+
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  194 (297)
T 2ojh_A          117 STGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRT  194 (297)
T ss_dssp             TTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTT
T ss_pred             CCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCC
Confidence            2 2223333333 348889999999986778889998888874  2222 234455667889999999999887766 58


Q ss_pred             CeEEEEECC-CccceecccccccCCCeEEEEECCCCCeEEEEeCC-----------CcEEEEecCCcceeeeeeeCceeE
Q psy13076        284 GKVFLYDGA-SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----------KTCKLWDIETKSAVSEFLMGNQVE  351 (423)
Q Consensus       284 g~i~vwd~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----------~~i~iwd~~~~~~i~~~~~~~~~~  351 (423)
                      +.+.+|+.. .+.....+.  .|...+..++|+|+|++|++++.+           +.|.+||+.+++..          
T Consensus       195 ~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------  262 (297)
T 2ojh_A          195 GQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE----------  262 (297)
T ss_dssp             SSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE----------
T ss_pred             CCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce----------
Confidence            999999875 444444443  356678899999999999988776           34777776654321          


Q ss_pred             eeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCC
Q psy13076        352 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG  414 (423)
Q Consensus       352 ~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~  414 (423)
                                                      .+..+.+|...+.+++|+|++++|++++.|.
T Consensus       263 --------------------------------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          263 --------------------------------TLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             --------------------------------EEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             --------------------------------eeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                                            1223346788899999999999998887653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=5.5e-23  Score=187.82  Aligned_cols=297  Identities=11%  Similarity=0.096  Sum_probs=203.4

Q ss_pred             CEEEEEeccceEEEEeccCCCCceeecc-cccC-ceeEEEEeCCCCeE-EEecCCCceEEeecCCcceeecccCCCCC--
Q psy13076         17 DYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNK-PITALALSPDRGTV-FTGSHDGFITRWNAKTEYIFATLPRTQRG--   91 (423)
Q Consensus        17 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~-gh~~-~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~~~~~~~~~~--   91 (423)
                      +++++++.++.|++||+.+ .+.+..+. ++.. .+..++|+|+++.+ ++++.++.|.+||..+++....+.....+  
T Consensus         2 ~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~   80 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             cEEEEcCCCCeEEEEECCC-CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence            5899999999999999976 34455554 3322 48899999999764 66777899999999998876655432211  


Q ss_pred             --CceEEeeCCCCCeEEEe-------------cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEE
Q psy13076         92 --QPIVLGGDPKGKNFLYT-------------NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVR  156 (423)
Q Consensus        92 --~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~  156 (423)
                        .+..+.++|+|+.+++.             ....+.+|++++++....+.. ...+..++|+|++++++++  ++.|.
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~  157 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLH  157 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence              34456788999877766             357899999998877666554 3456778999999988888  68899


Q ss_pred             EEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEE
Q psy13076        157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII  236 (423)
Q Consensus       157 vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  236 (423)
                      +||..+.+............   .+.|+|+++.+++.+.........+....                   ...+.... 
T Consensus       158 ~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~-  214 (337)
T 1pby_B          158 VMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTAR-------------------KDIDPADP-  214 (337)
T ss_dssp             EEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEB-------------------TTSCTTSG-
T ss_pred             EEECCCCcEeeeeeccccCC---CceeCCCccEEeeeccCCCceeeeeeccc-------------------cccccccc-
Confidence            99998876543332221112   23789998876654433222111111100                   00000000 


Q ss_pred             EEeCCCeEEEEcCCCceee-eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEEC
Q psy13076        237 TGSEDNTIAVFEGPPFKFK-MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK  315 (423)
Q Consensus       237 s~s~d~~i~~~~~~~~~~~-~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~  315 (423)
                       ......+.+|+....+.. .....+...+..++|+|+|++++++  ++.|.+||..+++....+..   ...+.+++|+
T Consensus       215 -~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s  288 (337)
T 1pby_B          215 -TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---PHSYYSVNVS  288 (337)
T ss_dssp             -GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEEC
T ss_pred             -cccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---CCceeeEEEC
Confidence             001115777776654432 2233445567889999999999888  79999999998887666542   2457899999


Q ss_pred             CCCCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076        316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       316 ~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      |+|++|++++.++.|++||+.+++.+..+..
T Consensus       289 ~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            9999999999999999999999987776643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=9.7e-23  Score=186.64  Aligned_cols=269  Identities=12%  Similarity=0.199  Sum_probs=174.8

Q ss_pred             EEEEEeccceEEEEeccCCCC-ceeecccccCceeEEEEeCCCCeEEEecCC-CceEEeecC--Ccce--eecccCCCCC
Q psy13076         18 YLLTVSLSGFISYLDVNNPST-PIRVIKGHNKPITALALSPDRGTVFTGSHD-GFITRWNAK--TEYI--FATLPRTQRG   91 (423)
Q Consensus        18 ~~~~~~~dg~i~~~d~~~~~~-~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D-~~i~vW~~~--~~~~--~~~~~~~~~~   91 (423)
                      ++++++.|+.|++||++...+ .......|...+.+++|+|++++|++++.+ +.|++|+++  ++..  +..+..  .+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--PG   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--SS
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc--CC
Confidence            344447899999999964222 122223577889999999999988888776 999999987  4442  233322  22


Q ss_pred             CceEEeeCCCCCeEEEec--CCeEEEEecC---CCcccccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEEEcCC-Cc
Q psy13076         92 QPIVLGGDPKGKNFLYTN--GNSVIIRNIE---NPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVN-KE  164 (423)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~--~~~~~i~~~~---~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vwd~~~-~~  164 (423)
                      .+..+.++|+|+.+++..  +..+.+|+++   .......+..+. .+..++|+|+++++++++ .++.|++||+.+ ++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            556778899998776543  5679999984   333444444443 478899999999888877 899999999976 43


Q ss_pred             eeEEe--eec-CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC
Q psy13076        165 HILKN--EFH-PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED  241 (423)
Q Consensus       165 ~~~~~--~~~-~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d  241 (423)
                      .....  ... .....+..++|+|+++++++++                                            ..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~--------------------------------------------~~~  199 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN--------------------------------------------ELN  199 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE--------------------------------------------TTT
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEe--------------------------------------------CCC
Confidence            22111  111 1223456677777766554443                                            234


Q ss_pred             CeEEEEcCCC--cee--eee---cc---ccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCC--c--cceecccccccC
Q psy13076        242 NTIAVFEGPP--FKF--KMT---KQ---EHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGAS--A--DLVSELGNPAHK  306 (423)
Q Consensus       242 ~~i~~~~~~~--~~~--~~~---~~---~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~--~--~~~~~~~~~~~~  306 (423)
                      +.+.+|+...  ...  ...   ..   .....+..++|+|+|++|+++. .++.|.+|+...  +  +.+..+.  .+ 
T Consensus       200 ~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~-  276 (343)
T 1ri6_A          200 SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TE-  276 (343)
T ss_dssp             TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CS-
T ss_pred             CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CC-
Confidence            4444444321  110  000   00   1123467899999999877544 789999999872  2  2333332  22 


Q ss_pred             CCeEEEEECCCCCeEEEEe-CCCcEEEEecC
Q psy13076        307 GGVYAVAWKPDGTQLLTAS-GDKTCKLWDIE  336 (423)
Q Consensus       307 ~~i~~l~~~~~~~~l~s~s-~d~~i~iwd~~  336 (423)
                      ..+.+++|+|+|++|++++ .++.|++|++.
T Consensus       277 ~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          277 TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            3378999999999888887 68999999553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=1.1e-22  Score=205.19  Aligned_cols=309  Identities=13%  Similarity=0.142  Sum_probs=204.7

Q ss_pred             CCeEEEecCCeEEEEecCCCccc-ccccCCc-----------------ceEEEEEECCCCCEEEEEccCCcEEEEEcCCC
Q psy13076        102 GKNFLYTNGNSVIIRNIENPAIS-DIYTEHS-----------------CAVNVAKYSPSGFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus       102 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~h~-----------------~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~  163 (423)
                      |..+++..+..+ +||+++++.. ..+..|.                 ..|.+++|+|| .+++.+ .+++|++||+.++
T Consensus        35 g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~  111 (706)
T 2z3z_A           35 GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR  111 (706)
T ss_dssp             TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT
T ss_pred             CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCCC
Confidence            455666555557 9999888773 3333333                 46999999999 555554 4599999999876


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC-----CcceecccCCCcc--------------eeE
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-----GTSVGEISGQSKP--------------INS  224 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--------------i~~  224 (423)
                      +...   .......+.+++|+|||+.++.+.+   ....+|...+     +............              +.+
T Consensus       112 ~~~~---l~~~~~~~~~~~~SpdG~~la~~~~---~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~  185 (706)
T 2z3z_A          112 KVTY---LFDTNEETASLDFSPVGDRVAYVRN---HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKG  185 (706)
T ss_dssp             EEEE---EECCTTCCTTCEECTTSSEEEEEET---TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCS
T ss_pred             ceEE---ccCCcccccCCcCCCCCCEEEEEEC---CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCce
Confidence            5432   2223456788999999999988643   2345666655     5544333333222              478


Q ss_pred             EEEecCCCeeEEEEe---------------------------------CCCeEEEEcCCCceeeeec--cccccCeEEEE
Q psy13076        225 CDFKPSRPFRIITGS---------------------------------EDNTIAVFEGPPFKFKMTK--QEHSRFVQAVR  269 (423)
Q Consensus       225 ~~~~~~~~~~~~s~s---------------------------------~d~~i~~~~~~~~~~~~~~--~~~~~~i~~l~  269 (423)
                      +.|+|++.+ +++++                                 .+..|++|+....+.....  ..+...+..++
T Consensus       186 ~~~SpDg~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  264 (706)
T 2z3z_A          186 TFWSPKGSC-LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS  264 (706)
T ss_dssp             EEECTTSSE-EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred             EEECCCCCE-EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence            999999987 45554                                 4467999998766543332  24566789999


Q ss_pred             ECCCCCEEEEEEecC-----eEEEEECCCccceecccccccCC---CeEEEEECC--CCCeEEEEeCCCcEEEEecC-Cc
Q psy13076        270 YSPSGSHFASAGFDG-----KVFLYDGASADLVSELGNPAHKG---GVYAVAWKP--DGTQLLTASGDKTCKLWDIE-TK  338 (423)
Q Consensus       270 ~s~~g~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~---~i~~l~~~~--~~~~l~s~s~d~~i~iwd~~-~~  338 (423)
                      |+|||++|++++.++     .|++||..+++....+....+..   .+.+++|+|  +|++|++++.|+.++||++. ++
T Consensus       265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~  344 (706)
T 2z3z_A          265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG  344 (706)
T ss_dssp             ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred             EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence            999999999988876     89999999884333332112222   235789999  99999999999999999886 55


Q ss_pred             ceeeeeeeCceeEeeEEEEEecCcEEEEEeC-CC----cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCC
Q psy13076        339 SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL-SG----FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD  413 (423)
Q Consensus       339 ~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~-~~----~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D  413 (423)
                      +.+..+..+.......+..+++|+.|+..+. ++    .++.|+..+..  ...+ .|...+.+++||||+++|+..+.+
T Consensus       345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l-~~~~~~~~~~~spdg~~l~~~~~~  421 (706)
T 2z3z_A          345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDL-TPESGMHRTQLSPDGSAIIDIFQS  421 (706)
T ss_dssp             CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEES-CCSSSEEEEEECTTSSEEEEEEEC
T ss_pred             CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceec-cCCCceEEEEECCCCCEEEEEecC
Confidence            5555443322111112456678988876554 43    56667766543  2333 377789999999999998766433


Q ss_pred             ----CcEEEeeCCC
Q psy13076        414 ----GFITRWNAKT  423 (423)
Q Consensus       414 ----~~i~~W~~~~  423 (423)
                          +.|++||+++
T Consensus       422 ~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          422 PTVPRKVTVTNIGK  435 (706)
T ss_dssp             SSCSCEEEEEESSS
T ss_pred             CCCCcEEEEEECCC
Confidence                5699999763

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=1.1e-23  Score=213.04  Aligned_cols=320  Identities=13%  Similarity=0.108  Sum_probs=207.5

Q ss_pred             CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc
Q psy13076         48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY  127 (423)
Q Consensus        48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  127 (423)
                      ..+.+++|+|+|+++++ +.||+|++||.++++....+                                          
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~------------------------------------------   53 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI------------------------------------------   53 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE------------------------------------------
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe------------------------------------------
Confidence            34778999999998776 78999999999876543221                                          


Q ss_pred             cCCc---ceEEEEEECCCCCEEEEEccC---------CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076        128 TEHS---CAVNVAKYSPSGFYIASGDIS---------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE  195 (423)
Q Consensus       128 ~~h~---~~i~~~~~sp~~~~l~s~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~  195 (423)
                      .+|.   ..|..++|||||++|++++.+         +.+.+||+.+++.........+...+..++|||||+.++.++.
T Consensus        54 ~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~  133 (723)
T 1xfd_A           54 EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE  133 (723)
T ss_dssp             CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET
T ss_pred             ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC
Confidence            1122   147789999999999998764         7788999987764211111122234788999999999998875


Q ss_pred             CCceeeEEEeecCCcceecccCCCcc------------------eeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee
Q psy13076        196 GRERFGHVFMSETGTSVGEISGQSKP------------------INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT  257 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~  257 (423)
                      .   ...+++..++........+...                  +..+.|+|++..++.+...+..+.+|+.....    
T Consensus       134 ~---~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~----  206 (723)
T 1xfd_A          134 N---NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT----  206 (723)
T ss_dssp             T---EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS----
T ss_pred             C---eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC----
Confidence            2   2345555555544333332222                  26899999998744444444556666533211    


Q ss_pred             ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc----ccCCCeEEEEECCCCCeEEEEeC----CCc
Q psy13076        258 KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP----AHKGGVYAVAWKPDGTQLLTASG----DKT  329 (423)
Q Consensus       258 ~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~s~s~----d~~  329 (423)
                       ..+...+..+.|.++|..    ..+..|++||..+++....+...    .+...+..++|+|||++|++.+.    +..
T Consensus       207 -~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  281 (723)
T 1xfd_A          207 -GSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI  281 (723)
T ss_dssp             -SSSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE
T ss_pred             -CcCCCcceeccCCCCCCC----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEE
Confidence             112234678889888863    34568999999888754444321    13567889999999999877653    357


Q ss_pred             EEEEecCCcceeeeeeeCcee--E--eeEEEEEecCcEEEEE--eCCC------cEEEEecCCCCC--ceEEeccCCCce
Q psy13076        330 CKLWDIETKSAVSEFLMGNQV--E--DQQVSCLWQGDYLLTV--SLSG------FISYLDVNNPST--PIRVIKGHNKPI  395 (423)
Q Consensus       330 i~iwd~~~~~~i~~~~~~~~~--~--~~~~~~~~~g~~l~~~--~~~~------~i~~~~~~~~~~--~~~~~~~h~~~v  395 (423)
                      |++||+.++++...+......  .  ......+++|+.|+..  ..++      .+++||......  ....+..+...+
T Consensus       282 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  361 (723)
T 1xfd_A          282 LTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV  361 (723)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred             EEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence            999999988765543221111  1  0245567799977754  4566      467777323222  023444334445


Q ss_pred             eE-EEecCCCCeEEEecCC---CcEEEeeCC
Q psy13076        396 TA-LALSPDRGTVFTGSHD---GFITRWNAK  422 (423)
Q Consensus       396 ~~-i~~sp~~~~l~s~s~D---~~i~~W~~~  422 (423)
                      .. ++|+||++.|+..+.+   +.+++|++.
T Consensus       362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             EEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             EeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence            54 6999999999766554   889999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=3.2e-22  Score=182.62  Aligned_cols=283  Identities=10%  Similarity=0.048  Sum_probs=189.5

Q ss_pred             EEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcc
Q psy13076         54 ALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC  132 (423)
Q Consensus        54 ~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~  132 (423)
                      .|.+++. .+++++.+++|++||.+++++...+                                          ..+..
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~------------------------------------------~~~~~   41 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI------------------------------------------TLGYD   41 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEE------------------------------------------ECCCC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeE------------------------------------------EccCC
Confidence            4555554 4778889999999999876554322                                          11223


Q ss_pred             eEEEEEECCCCCEEEEEcc-CCcEEEEEcCCCce-eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce--eeEEEeecC
Q psy13076        133 AVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER--FGHVFMSET  208 (423)
Q Consensus       133 ~i~~~~~sp~~~~l~s~~~-d~~i~vwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~--~~~~~~~~~  208 (423)
                      .+ .++|+|+|+++++++. ++.|.+||..+++. ...  ......+..+++|+|++++++ ++.....  ...+|+...
T Consensus        42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA--IQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE--EEECSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTT
T ss_pred             cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe--cccCCCCccceEECCCCCEEE-EecCCCCcccEEEEECCC
Confidence            45 8899999997766655 89999999987765 322  222234444499999999988 4433322  566777777


Q ss_pred             CcceecccCCCcceeEEEEecCCCeeEEEEeCCCe-EEEEcCCCceee----eeccccccCeEEEEECCCCCEEEEEE-e
Q psy13076        209 GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT-IAVFEGPPFKFK----MTKQEHSRFVQAVRYSPSGSHFASAG-F  282 (423)
Q Consensus       209 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~-i~~~~~~~~~~~----~~~~~~~~~i~~l~~s~~g~~l~s~s-~  282 (423)
                      ++.+..+... ..+..++|+|++.+++++...++. +.+|+.......    .........+..++|+|+|++++.++ .
T Consensus       118 ~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  196 (331)
T 3u4y_A          118 NKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI  196 (331)
T ss_dssp             TEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC
Confidence            7766655543 346899999999876777777788 999986432111    11112334578999999999665554 6


Q ss_pred             cCeEEEEECCCccc---eecccccccCCCeEEEEECCCCCeEEEE-eCCCcEEEEecCCccee--eeeeeCceeEeeEEE
Q psy13076        283 DGKVFLYDGASADL---VSELGNPAHKGGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAV--SEFLMGNQVEDQQVS  356 (423)
Q Consensus       283 dg~i~vwd~~~~~~---~~~~~~~~~~~~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i--~~~~~~~~~~~~~~~  356 (423)
                      ++.|.+||..+++.   +..+.   ....+..++|+|+|++|+.+ ..++.|.+||+.+++..  ..+..          
T Consensus       197 ~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~----------  263 (331)
T 3u4y_A          197 GNSIGILETQNPENITLLNAVG---TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH----------  263 (331)
T ss_dssp             TTEEEEEECSSTTSCEEEEEEE---CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC----------
T ss_pred             CCeEEEEECCCCcccceeeecc---CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc----------
Confidence            89999999998887   55553   23567889999999977655 45788999999887642  11100          


Q ss_pred             EEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEE-EecCCCcEEEeeCCC
Q psy13076        357 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TGSHDGFITRWNAKT  423 (423)
Q Consensus       357 ~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~-s~s~D~~i~~W~~~~  423 (423)
                                            .   ..  .........+.++|+||+++|+ ++..++.|.+||+++
T Consensus       264 ----------------------~---~~--~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          264 ----------------------G---LL--IDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             ----------------------C---CC--CCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             ----------------------c---cc--cCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence                                  0   00  0001112236799999999875 455677999999763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=2.3e-21  Score=178.42  Aligned_cols=270  Identities=16%  Similarity=0.151  Sum_probs=191.5

Q ss_pred             eeeEEEEeCCEEEEEec-------cceEEEEeccCCCCceeecccccCceeEEEEeCCCCe-EEEecCCCceEEeecCCc
Q psy13076          8 QQVSCLWQGDYLLTVSL-------SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT-VFTGSHDGFITRWNAKTE   79 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~-------dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~-l~sg~~D~~i~vW~~~~~   79 (423)
                      +.+++++||+++++++.       ++.|.+||..+ .+....+.. ...+..++|+|++++ ++++..++.|.+||.+++
T Consensus        44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  121 (353)
T 3vgz_A           44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT-LEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG  121 (353)
T ss_dssp             EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT-CCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred             cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-CeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC
Confidence            56788889999988874       67899999976 445555553 345788999999984 566677899999999998


Q ss_pred             ceeecccCCCCC--------CceEEeeCCCCCeEEEec---CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEE
Q psy13076         80 YIFATLPRTQRG--------QPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS  148 (423)
Q Consensus        80 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s  148 (423)
                      +....+......        .+..+.++|+|+.++...   +..+.+|+.++++....+..+...+..+.|+|+++++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  201 (353)
T 3vgz_A          122 EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYT  201 (353)
T ss_dssp             CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEE
T ss_pred             eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEE
Confidence            877665443211        134577889998766554   567999999998888877756666788999999999999


Q ss_pred             EccCCcEEEEEcCCCceeEEeeecC--CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEE
Q psy13076        149 GDISGKVRIWDTVNKEHILKNEFHP--IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD  226 (423)
Q Consensus       149 ~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  226 (423)
                      ++.++.|.+||..+.+.........  ....+..++|+|+++.+                                    
T Consensus       202 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l------------------------------------  245 (353)
T 3vgz_A          202 TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA------------------------------------  245 (353)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE------------------------------------
T ss_pred             EcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE------------------------------------
Confidence            9999999999998776543322211  12223445555555443                                    


Q ss_pred             EecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceeccccccc
Q psy13076        227 FKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAH  305 (423)
Q Consensus       227 ~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~  305 (423)
                              +++...++.+.+||....+.........  ...++|+|+|++++.++ .++.|.+||..+++.+..+..   
T Consensus       246 --------~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---  312 (353)
T 3vgz_A          246 --------FITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---  312 (353)
T ss_dssp             --------EEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---
T ss_pred             --------EEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---
Confidence                    3334445677777765544433332222  24689999999766555 689999999999887766642   


Q ss_pred             CCCeEEEEECCCCCeEEEEeCCC
Q psy13076        306 KGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       306 ~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                      ...+.+++|+|+|++|+.+..++
T Consensus       313 ~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          313 PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             CSEEEEEEECTTSCEEEEEEECC
T ss_pred             CCCCCeEEEcCCCCEEEEEEccc
Confidence            34678999999999777766554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=1.6e-21  Score=178.56  Aligned_cols=271  Identities=11%  Similarity=0.160  Sum_probs=180.2

Q ss_pred             EEEEEccCCcEEEEEcCC-CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec--CCc--ceecccCCC
Q psy13076        145 YIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE--TGT--SVGEISGQS  219 (423)
Q Consensus       145 ~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~  219 (423)
                      .+++++.|+.|++||+.. ++... .........+..++|+|+++.+++++... ....+|..+  .+.  .+..+....
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTL-TQVVDVPGQVQPMVVSPDKRYLYVGVRPE-FRVLAYRIAPDDGALTFAAESALPG   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEE-EEEEECSSCCCCEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEE-eeeEecCCCCceEEECCCCCEEEEeecCC-CeEEEEEecCCCCceeeccccccCC
Confidence            445557899999999853 22211 11122345688999999999988887653 234566555  333  223333333


Q ss_pred             cceeEEEEecCCCeeEEEEeCCCeEEEEcC---CCceeeeeccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCC-c
Q psy13076        220 KPINSCDFKPSRPFRIITGSEDNTIAVFEG---PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGAS-A  294 (423)
Q Consensus       220 ~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~---~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~-~  294 (423)
                       .+..++|+|++.++++++..++.|.+|+.   ...+...... ....+.+++|+|+|+++++++ .++.|.+||+.+ +
T Consensus        85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence             77899999999876666667899999987   3222222222 233578899999999888887 899999999987 5


Q ss_pred             ccee----cccccccCCCeEEEEECCCCCeEEEEe-CCCcEEEEecCC--cce--eeeeeeC-c----eeEeeEEEEEec
Q psy13076        295 DLVS----ELGNPAHKGGVYAVAWKPDGTQLLTAS-GDKTCKLWDIET--KSA--VSEFLMG-N----QVEDQQVSCLWQ  360 (423)
Q Consensus       295 ~~~~----~~~~~~~~~~i~~l~~~~~~~~l~s~s-~d~~i~iwd~~~--~~~--i~~~~~~-~----~~~~~~~~~~~~  360 (423)
                      +...    .+.. .....+..++|+|++++|+.++ .++.|++||+..  ++.  ....... .    ......+.+.++
T Consensus       163 ~~~~~~~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  241 (343)
T 1ri6_A          163 HLVAQDPAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD  241 (343)
T ss_dssp             CEEEEEEEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred             ceeeeccccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence            4322    1111 1234678999999999776554 789999999953  332  1111100 0    112224566778


Q ss_pred             CcEEEEE-eCCCcEEEEecCCCC---CceEEeccCCCceeEEEecCCCCeEEEec-CCCcEEEeeC
Q psy13076        361 GDYLLTV-SLSGFISYLDVNNPS---TPIRVIKGHNKPITALALSPDRGTVFTGS-HDGFITRWNA  421 (423)
Q Consensus       361 g~~l~~~-~~~~~i~~~~~~~~~---~~~~~~~~h~~~v~~i~~sp~~~~l~s~s-~D~~i~~W~~  421 (423)
                      |+++++. ..++.+.+|++....   ..+..+..+.. +.+++|+|++++|++++ .|+.|.+|++
T Consensus       242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence            9888744 578999999997421   22333444444 89999999999887776 6899999954

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=4.6e-22  Score=200.97  Aligned_cols=330  Identities=11%  Similarity=0.073  Sum_probs=216.1

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccC---ceeEEEEeCCCCeEEEecC---------CCceEEeec
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK---PITALALSPDRGTVFTGSH---------DGFITRWNA   76 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~---~V~~l~~~~~~~~l~sg~~---------D~~i~vW~~   76 (423)
                      .++.++||.++++ +.||.|++||+.+ .++...+.+|..   .|.+++|||||++|++++.         |++|++||+
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIET-GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSS-CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCC-CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            4566668976665 5799999999976 445556666654   4999999999999998876         799999999


Q ss_pred             CCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc-cCCcceE-----------------EEEE
Q psy13076         77 KTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TEHSCAV-----------------NVAK  138 (423)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~h~~~i-----------------~~~~  138 (423)
                      ++++.......  ......+.++|+|+.+++..++.+.+|++.+++..... .++...|                 ..+.
T Consensus        98 ~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A           98 SNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             TTTEECCSSCC--CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             CCCccccceec--CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence            99876311111  12334578999999999988899999999887665433 2333322                 4799


Q ss_pred             ECCCCCEEEEEccCC----------------------------------cEEEEEcCCCcee--EEe----eecCCCCCe
Q psy13076        139 YSPSGFYIASGDISG----------------------------------KVRIWDTVNKEHI--LKN----EFHPIGGPI  178 (423)
Q Consensus       139 ~sp~~~~l~s~~~d~----------------------------------~i~vwd~~~~~~~--~~~----~~~~~~~~v  178 (423)
                      |+|||++||+++.|.                                  +|++||+.+++..  ...    .+..+...+
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  255 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF  255 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence            999999999988652                                  7889998876531  111    112344568


Q ss_pred             eEEEECCCCCeEEEEEcCCcee--eEEEe----ecCCcceecc----cCCCccee-----EEEEecCCCeeEE-EEeCCC
Q psy13076        179 KDIAWSPDNQRMVVVGEGRERF--GHVFM----SETGTSVGEI----SGQSKPIN-----SCDFKPSRPFRII-TGSEDN  242 (423)
Q Consensus       179 ~~v~~s~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~~~~-s~s~d~  242 (423)
                      .+++|+||++.+++........  ..+++    ..++.....+    ..+...+.     .+.|+|++..+++ ++..++
T Consensus       256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g  335 (719)
T 1z68_A          256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG  335 (719)
T ss_dssp             EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred             EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence            8999999977555543322222  33344    3344444334    24555555     7899999886444 444555


Q ss_pred             --eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec-----CeEEEEECCC--cc-ceeccc--ccccCCCeE
Q psy13076        243 --TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-----GKVFLYDGAS--AD-LVSELG--NPAHKGGVY  310 (423)
Q Consensus       243 --~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-----g~i~vwd~~~--~~-~~~~~~--~~~~~~~i~  310 (423)
                        .|.+|+...... ..+..+...+..+.++ +++.++..+.+     +...+|....  +. ....+.  ...|...+.
T Consensus       336 ~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~  413 (719)
T 1z68_A          336 YKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYY  413 (719)
T ss_dssp             CEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBE
T ss_pred             ceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceE
Confidence              566677544332 2333344446666666 88877666654     7788887643  32 122222  112556678


Q ss_pred             EEEECCCCCeEEEE-eCC--CcEEEEecCCcceeeee
Q psy13076        311 AVAWKPDGTQLLTA-SGD--KTCKLWDIETKSAVSEF  344 (423)
Q Consensus       311 ~l~~~~~~~~l~s~-s~d--~~i~iwd~~~~~~i~~~  344 (423)
                      .+.|+|++++++.. +.+  ..+.+||+.+++++..+
T Consensus       414 ~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~  450 (719)
T 1z68_A          414 TASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL  450 (719)
T ss_dssp             EEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence            89999999887743 333  46889999888765444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=1.3e-20  Score=173.38  Aligned_cols=273  Identities=13%  Similarity=0.103  Sum_probs=202.7

Q ss_pred             ceEEEEEECCCCCEEEEEcc-------CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        132 CAVNVAKYSPSGFYIASGDI-------SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      ..+..++|+|+++++++++.       ++.|.+||..+.+.......   ...+..++|+|+++.++++..... ...++
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~~-~v~~~  116 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVNS-AVTAI  116 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTTT-EEEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCCC-EEEEE
Confidence            45778999999998888774       56899999988776544333   234678999999998777765433 45667


Q ss_pred             eecCCcceecccCCCc---------ceeEEEEecCCCeeEEEE-eCCCeEEEEcCCCceeeeeccccccCeEEEEECCCC
Q psy13076        205 MSETGTSVGEISGQSK---------PINSCDFKPSRPFRIITG-SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG  274 (423)
Q Consensus       205 ~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~s~-s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g  274 (423)
                      +..+++.+..+..+..         .+..+.++|++...+++. ..++.|.+||....+.......+...+..++|+|+|
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence            7777776665554321         267899999998755555 357899999988777666655455557889999999


Q ss_pred             CEEEEEEecCeEEEEECCCccceecccc--cccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecCCcceeeeeeeCceeE
Q psy13076        275 SHFASAGFDGKVFLYDGASADLVSELGN--PAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIETKSAVSEFLMGNQVE  351 (423)
Q Consensus       275 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~i~~~~~~~~~~  351 (423)
                      +++++++.++.|.+||..+++....+..  ..+...+.+++|+|++++|+.++. ++.|.+||..+++.+..+.....  
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--  274 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--  274 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--
T ss_pred             CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--
Confidence            9999999999999999999887665532  124556788999999997776655 58999999999988777665433  


Q ss_pred             eeEEEEEecCcEEEEEe-CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCC
Q psy13076        352 DQQVSCLWQGDYLLTVS-LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD  413 (423)
Q Consensus       352 ~~~~~~~~~g~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D  413 (423)
                       ..+.+.++|+++.++. .++.+.+||..+... +..+.. ...+.+++|+||+++|+.+..+
T Consensus       275 -~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          275 -LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV-VKTFDT-PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             -CCEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred             -ceEEECCCCCEEEEEECCCCeEEEEECCCCeE-EEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence             3466678898766555 689999999977533 334433 3478999999999976655443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=1.2e-21  Score=178.80  Aligned_cols=270  Identities=11%  Similarity=0.064  Sum_probs=174.1

Q ss_pred             CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcc-eEEEEE
Q psy13076         60 GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC-AVNVAK  138 (423)
Q Consensus        60 ~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~-~i~~~~  138 (423)
                      ++|++++.|++|++||..+++....+..                                         ++.. .+..++
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~   40 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI-----------------------------------------ADAGPTPMVPM   40 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC-----------------------------------------TTCTTCCCCEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc-----------------------------------------CCCCCCccceE
Confidence            4789999999999999988765443211                                         1111 245678


Q ss_pred             ECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecC---CCCCeeEEEECCCCCeEEEEEcC----------CceeeEEE
Q psy13076        139 YSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHP---IGGPIKDIAWSPDNQRMVVVGEG----------RERFGHVF  204 (423)
Q Consensus       139 ~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~v~~v~~s~~~~~~~~~~~~----------~~~~~~~~  204 (423)
                      |+|+++++ +++..++.|.+||..+++.........   ....+..++|+|+++.++++...          ......++
T Consensus        41 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~  120 (337)
T 1pby_B           41 VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY  120 (337)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             EcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEE
Confidence            99999765 556668899999998876554333221   01146789999999988887521          12344566


Q ss_pred             eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec-
Q psy13076        205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-  283 (423)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-  283 (423)
                      +..++.....+.. ...+..+.|+|++.++++ +  ++.+.+|+....+.......+.. ...+.|+|+|++++..+.+ 
T Consensus       121 d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~-~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~  195 (337)
T 1pby_B          121 DAETLSRRKAFEA-PRQITMLAWARDGSKLYG-L--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESS  195 (337)
T ss_dssp             ETTTTEEEEEEEC-CSSCCCEEECTTSSCEEE-E--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTT
T ss_pred             ECCCCcEEEEEeC-CCCcceeEECCCCCEEEE-e--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCC
Confidence            6666655555443 345778899999987444 4  68899999877665544333220 0123789999876554432 


Q ss_pred             C-----------------------eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076        284 G-----------------------KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA  340 (423)
Q Consensus       284 g-----------------------~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~  340 (423)
                      +                       .|.+||..+++.. .+....+...+.+++|+|+|++|+++  ++.|.+||+.+++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~  272 (337)
T 1pby_B          196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS  272 (337)
T ss_dssp             TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE
T ss_pred             CceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcC
Confidence            2                       4689999888764 33333455678899999999999888  78999999988776


Q ss_pred             eeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCC
Q psy13076        341 VSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNN  380 (423)
Q Consensus       341 i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~  380 (423)
                      +..+.....  ...+.+.++|+++++++.++.+.+||+.+
T Consensus       273 ~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          273 IKRVPLPHS--YYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EEEEECSSC--CCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             cceecCCCc--eeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence            554432211  12233334455554444455555555443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=1.8e-21  Score=196.66  Aligned_cols=351  Identities=10%  Similarity=0.040  Sum_probs=218.0

Q ss_pred             EEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCC--CCceEEeeCCCCCeEEEecC----------CeEEEEecC
Q psy13076         52 ALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQR--GQPIVLGGDPKGKNFLYTNG----------NSVIIRNIE  119 (423)
Q Consensus        52 ~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~  119 (423)
                      .++|+|++++++++ .|++|++||.+++.....+.....  .....+.++|+|+.+++...          ..+.+|+++
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            78999999766555 699999999999876554432211  12446789999998887643          689999999


Q ss_pred             CCccc--ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCC-----------------CeeE
Q psy13076        120 NPAIS--DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG-----------------PIKD  180 (423)
Q Consensus       120 ~~~~~--~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----------------~v~~  180 (423)
                      +++..  ..+   ...+..++|||||++||.+. ++.|++||+.+++.... .......                 ...+
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l-~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI-TFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC-CCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE-ecCCCcCCeEcccccceeeeecccCccc
Confidence            88762  122   24578899999999999985 78999999977654321 1111111                 1258


Q ss_pred             EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee----e
Q psy13076        181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK----M  256 (423)
Q Consensus       181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~----~  256 (423)
                      ++|||||+.++.++................      .+......+.+...+.     ......+++|+....+..    .
T Consensus       174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~------~~~~~~~~~~yp~~g~-----~~~~~~l~~~d~~~~~~~~~~~~  242 (719)
T 1z68_A          174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGD------EQYPRTINIPYPKAGA-----KNPVVRIFIIDTTYPAYVGPQEV  242 (719)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEEEECCS------SSSCEEEEEECCBTTS-----CCCEEEEEEEESSCHHHHCCEEC
T ss_pred             EEECCCCCEEEEEEECCCCCceEEeeccCC------CCCccceeecCCCCCC-----CCCeeEEEEEECCCCCccceeEc
Confidence            999999999998764322111111110000      1122234444443332     123347889987654421    1


Q ss_pred             ----eccccccCeEEEEECCCCCEEEEEEec----CeEEEEE----CCCccceeccc--ccccCCCeE-----EEEECCC
Q psy13076        257 ----TKQEHSRFVQAVRYSPSGSHFASAGFD----GKVFLYD----GASADLVSELG--NPAHKGGVY-----AVAWKPD  317 (423)
Q Consensus       257 ----~~~~~~~~i~~l~~s~~g~~l~s~s~d----g~i~vwd----~~~~~~~~~~~--~~~~~~~i~-----~l~~~~~  317 (423)
                          .+..+...+..++|+||++++++....    ..|++||    ..+++....+.  ...|.+.+.     .++|+||
T Consensus       243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  322 (719)
T 1z68_A          243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD  322 (719)
T ss_dssp             CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred             cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence                123567788999999998877764433    2488999    77776543331  024556665     7899999


Q ss_pred             CCeEEE--EeCCC--cEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCC-----CcEEEEecCC--CCCceE
Q psy13076        318 GTQLLT--ASGDK--TCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----GFISYLDVNN--PSTPIR  386 (423)
Q Consensus       318 ~~~l~s--~s~d~--~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~i~~~~~~~--~~~~~~  386 (423)
                      |+.|+.  +..++  .|.+||+.+++. ..+... .......... +|+.++..+..     +...+|.+..  ......
T Consensus       323 g~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  399 (719)
T 1z68_A          323 AISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKK  399 (719)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEE
T ss_pred             CCeEEEEEEccCCceEEEEEECCCCce-EecccC-ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCce
Confidence            996654  44555  466777766652 222221 1112223333 78888766654     6777777654  211223


Q ss_pred             Eec----cCCCceeEEEecCCCCeEE-EecCC--CcEEEeeCC
Q psy13076        387 VIK----GHNKPITALALSPDRGTVF-TGSHD--GFITRWNAK  422 (423)
Q Consensus       387 ~~~----~h~~~v~~i~~sp~~~~l~-s~s~D--~~i~~W~~~  422 (423)
                      .+.    +|...+..++|+||+++|+ +++.+  ..+.+||++
T Consensus       400 ~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~  442 (719)
T 1z68_A          400 CVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR  442 (719)
T ss_dssp             ESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred             eccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence            333    3677889999999999876 44443  467788764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.90  E-value=1.4e-20  Score=190.41  Aligned_cols=357  Identities=11%  Similarity=0.060  Sum_probs=217.5

Q ss_pred             cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCC--ce--EEeeCCCCCeEEEecC----------Ce
Q psy13076         47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQ--PI--VLGGDPKGKNFLYTNG----------NS  112 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~----------~~  112 (423)
                      .....+++|+|++++++++  |++|++||++++.....+..+....  ..  .+.++|+|+.+++..+          ..
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            3446689999999999887  9999999999987655544332111  11  2577999998887654          45


Q ss_pred             EEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCC-----------------
Q psy13076        113 VIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG-----------------  175 (423)
Q Consensus       113 ~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------------  175 (423)
                      +.+|++++++... +..|...+...+|||||+.||.+ .|+.|.+|+..+++... .......                 
T Consensus        94 ~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           94 YDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhc
Confidence            6799999988654 56777889999999999999988 57899999987765332 1111111                 


Q ss_pred             CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC---c
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP---F  252 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~---~  252 (423)
                      +....+.|||||+.++....+...............    ..+......+.|.+.+..     .....|++|+...   .
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~----~~~~~~~~~~~yp~~G~~-----~~~~~l~v~d~~~~~~~  241 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE----SLQYPKTVRVPYPKAGAV-----NPTVKFFVVNTDSLSSV  241 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST----TCSSCEEEEEECCBTTSC-----CCEEEEEEEETTSCCSS
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC----CCCCCcceeecCCCCcCc-----CCeeEEEEEECCCCCCC
Confidence            122458999999999887643321111111100000    012233445555554431     2223688898766   4


Q ss_pred             ---eeeeecc-----ccccCeEEEEECCCCCEEEEEEe----cCeEEEEECCCcc----c--eecccccccCCCeE----
Q psy13076        253 ---KFKMTKQ-----EHSRFVQAVRYSPSGSHFASAGF----DGKVFLYDGASAD----L--VSELGNPAHKGGVY----  310 (423)
Q Consensus       253 ---~~~~~~~-----~~~~~i~~l~~s~~g~~l~s~s~----dg~i~vwd~~~~~----~--~~~~~~~~~~~~i~----  310 (423)
                         +......     .+...+..++|+|||+.++....    +..|++||..+++    +  ...+....|.+.+.    
T Consensus       242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~  321 (740)
T 4a5s_A          242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP  321 (740)
T ss_dssp             SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred             CcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence               2221111     36778999999999997666543    3379999998876    2  22221123555544    


Q ss_pred             -EEEECCCCCeEE-EEeC-CC--cEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCC-----C--cEEEEec
Q psy13076        311 -AVAWKPDGTQLL-TASG-DK--TCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----G--FISYLDV  378 (423)
Q Consensus       311 -~l~~~~~~~~l~-s~s~-d~--~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~--~i~~~~~  378 (423)
                       .++|+|||+.|+ ..+. +|  .|.+||..+++... +..+ ....... ..++++.|+..+..     +  .++..++
T Consensus       322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g-~~~v~~~-~~~d~~~i~f~~~~~~~~~~~~~ly~v~~  398 (740)
T 4a5s_A          322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKG-TWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQL  398 (740)
T ss_dssp             CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCS-SSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred             CCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccC-CEEEEEE-EEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence             789999999877 6654 33  58888887765432 2222 1111111 22567777655443     3  3444454


Q ss_pred             CCCCCceEEec----cCCCceeEEEecCCCCeEEEecCC---CcEEEeeC
Q psy13076        379 NNPSTPIRVIK----GHNKPITALALSPDRGTVFTGSHD---GFITRWNA  421 (423)
Q Consensus       379 ~~~~~~~~~~~----~h~~~v~~i~~sp~~~~l~s~s~D---~~i~~W~~  421 (423)
                      ..... ...+.    +........+|||++++++.....   ..+.+++.
T Consensus       399 ~g~~~-~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~  447 (740)
T 4a5s_A          399 IDYTK-VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSS  447 (740)
T ss_dssp             TEEEE-EEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEET
T ss_pred             CCCCc-ceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEEC
Confidence            33211 11222    234578899999999987643322   24455544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=9.6e-22  Score=193.73  Aligned_cols=267  Identities=13%  Similarity=0.084  Sum_probs=181.0

Q ss_pred             ccceeeEEEEeCCEEEEEec-cceEEEEeccCCCCceeeccccc-CceeEEEEeCCCCeEEEecC---CCceEEeecCC-
Q psy13076          5 VEDQQVSCLWQGDYLLTVSL-SGFISYLDVNNPSTPIRVIKGHN-KPITALALSPDRGTVFTGSH---DGFITRWNAKT-   78 (423)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~-dg~i~~~d~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~l~sg~~---D~~i~vW~~~~-   78 (423)
                      +.-+.+++++||++||.++. ||.++||+++. .. ...+..|. ..|..++|+|+ +++++++.   +...++|.+.. 
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-g~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-GE-TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEET-TE-EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcC-CC-cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            34577889999999999987 99999999853 33 44555555 68999999999 78887664   56567765432 


Q ss_pred             --cceeecccCCCCCCceEEeeCCCCC--eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC--
Q psy13076         79 --EYIFATLPRTQRGQPIVLGGDPKGK--NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS--  152 (423)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d--  152 (423)
                        +... .+... .+ .....++|+|+  .++........+|++++++.......+.   .++.|+|||+++++++.+  
T Consensus        99 ~~g~~~-~l~~~-~~-~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           99 RPGEEQ-RLEAV-KP-MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             STTCCE-ECTTS-CS-BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred             CCCccc-cccCC-CC-ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence              2111 22111 12 22445666664  3444445566699999887766554443   788999999999988877  


Q ss_pred             --CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecC
Q psy13076        153 --GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPS  230 (423)
Q Consensus       153 --~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  230 (423)
                        ..|.+||+.+++..   .+....+.+..++|+|||+.++..                                     
T Consensus       173 ~~~~i~~~d~~~g~~~---~l~~~~~~~~~~~~SpDG~~l~~~-------------------------------------  212 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLR---VFDSGEGSFSSASISPGMKVTAGL-------------------------------------  212 (582)
T ss_dssp             TEEEEEEEETTTCCCE---EECCSSCEEEEEEECTTSCEEEEE-------------------------------------
T ss_pred             CCeEEEEEcCCCCCce---EeecCCCccccceECCCCCEEEEc-------------------------------------
Confidence              78999998776643   223344667888888888876622                                     


Q ss_pred             CCeeEEEEeCCC--eEEEEcCCCceeeeeccccccCeEEEE--------ECCCCCEEEEEEecCeEEEEECCCccceecc
Q psy13076        231 RPFRIITGSEDN--TIAVFEGPPFKFKMTKQEHSRFVQAVR--------YSPSGSHFASAGFDGKVFLYDGASADLVSEL  300 (423)
Q Consensus       231 ~~~~~~s~s~d~--~i~~~~~~~~~~~~~~~~~~~~i~~l~--------~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~  300 (423)
                              ..++  .|++|+....+.. ....+...+..++        |+|||.++++++.|+.+++|+.  ++.... 
T Consensus       213 --------~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-  280 (582)
T 3o4h_A          213 --------ETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-  280 (582)
T ss_dssp             --------ECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-
T ss_pred             --------cCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-
Confidence                    2222  4555554443333 3333433343344        9999988999999999999998  554331 


Q ss_pred             cccccCCCeEEEEECCCCCeEEEEeCCCc---EEEEecCC
Q psy13076        301 GNPAHKGGVYAVAWKPDGTQLLTASGDKT---CKLWDIET  337 (423)
Q Consensus       301 ~~~~~~~~i~~l~~~~~~~~l~s~s~d~~---i~iwd~~~  337 (423)
                          ..+.+.+++|+ +++++++++.+.+   +.+||...
T Consensus       281 ----~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          281 ----PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             ----CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             ----CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence                34668899999 9999999888754   66666543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=6.8e-21  Score=174.85  Aligned_cols=275  Identities=10%  Similarity=0.055  Sum_probs=184.6

Q ss_pred             EEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEe--cCCeEEEEecCCCcccccccC
Q psy13076         52 ALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYT--NGNSVIIRNIENPAISDIYTE  129 (423)
Q Consensus        52 ~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~  129 (423)
                      .+++++++.++++++.+++|++||.++++....+.......+..+.++|+|+.++..  .+..+.+|++++++....+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            346778888999999999999999999887766654332245567788999865544  356899999998877665543


Q ss_pred             -C-----cceEEEEEECCCCCEEEEEccC------------CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEE
Q psy13076        130 -H-----SCAVNVAKYSPSGFYIASGDIS------------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMV  191 (423)
Q Consensus       130 -h-----~~~i~~~~~sp~~~~l~s~~~d------------~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~  191 (423)
                       +     ...+..++|+|+|+++++++.+            +.|.+||+.+++.............+.+++|+|+++ ++
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~  162 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY  162 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence             2     2336788999999999998865            899999987743221111111234578899999999 55


Q ss_pred             EEEcCCceeeEEEeecCCcceecccCCC--c----------------------ceeEEEEecCCCee----------EEE
Q psy13076        192 VVGEGRERFGHVFMSETGTSVGEISGQS--K----------------------PINSCDFKPSRPFR----------IIT  237 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------------~i~~~~~~~~~~~~----------~~s  237 (423)
                      +.+ . .  ..+++..+++....+....  .                      ....+.+.+++...          +..
T Consensus       163 ~~~-~-~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          163 VAG-P-D--IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             EES-S-S--EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             Ecc-C-c--EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence            532 2 2  4556655555444433221  0                      12233443322100          001


Q ss_pred             EeCCCeEEEEcCCCceeeeeccccccCeEEEEECC-CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECC
Q psy13076        238 GSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP  316 (423)
Q Consensus       238 ~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~  316 (423)
                      ...++.+.+++.         ..+...+..++++| +|++++++  ++.|.+||+.+++....+..   ...+.+++|+|
T Consensus       239 ~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~  304 (349)
T 1jmx_B          239 DLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---DHTYYCVAFDK  304 (349)
T ss_dssp             ETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEECS
T ss_pred             eccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---CCCccceEECC
Confidence            112233333321         22445678899999 99998888  89999999999887666542   23467899999


Q ss_pred             CCCeEEEEeCCCcEEEEecCCcceeeeee
Q psy13076        317 DGTQLLTASGDKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       317 ~~~~l~s~s~d~~i~iwd~~~~~~i~~~~  345 (423)
                      +|++|++++.++.|++||+.+++.+..+.
T Consensus       305 dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          305 KGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             SSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEecCCCeEEEEeccccceeeeee
Confidence            99999988889999999999988776654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=3.3e-20  Score=170.53  Aligned_cols=272  Identities=14%  Similarity=0.168  Sum_probs=174.9

Q ss_pred             ccceEEEEeccCCCCcee--ecccccCceeEEEEeCCCCeEEEecC---CCceEEeecCCcceeecccCCCCCCceEEee
Q psy13076         24 LSGFISYLDVNNPSTPIR--VIKGHNKPITALALSPDRGTVFTGSH---DGFITRWNAKTEYIFATLPRTQRGQPIVLGG   98 (423)
Q Consensus        24 ~dg~i~~~d~~~~~~~~~--~~~gh~~~V~~l~~~~~~~~l~sg~~---D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~   98 (423)
                      .++.|.+|+++..+....  ....+...+..++|+|+++ |++++.   ++.|++|++.++.....              
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~--------------   78 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL--------------   78 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE--------------
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe--------------
Confidence            456788888765333232  2345667788999999999 555543   68999999966532110              


Q ss_pred             CCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEEEcCC-CceeEEeeecC---
Q psy13076         99 DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVN-KEHILKNEFHP---  173 (423)
Q Consensus        99 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vwd~~~-~~~~~~~~~~~---  173 (423)
                                                ..+..+...+..++|+|+|+++++++ .+++|++|++.. +..........   
T Consensus        79 --------------------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~  132 (347)
T 3hfq_A           79 --------------------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH  132 (347)
T ss_dssp             --------------------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             --------------------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC
Confidence                                      00112334566789999999888887 679999999853 22211111111   


Q ss_pred             ------CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec-CCcce--eccc-CCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076        174 ------IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE-TGTSV--GEIS-GQSKPINSCDFKPSRPFRIITGSEDNT  243 (423)
Q Consensus       174 ------~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~  243 (423)
                            ....+.+++|+|+|+ ++++..... ...+|... .+...  ..+. .....+..++|+|++.++++++..++.
T Consensus       133 ~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~  210 (347)
T 3hfq_A          133 GPRPEQDGSHIHYTDLTPDNR-LAVIDLGSD-KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ  210 (347)
T ss_dssp             CSSTTCSSCCEEEEEECTTSC-EEEEETTTT-EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCccccCCCceEEEECCCCc-EEEEeCCCC-EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCE
Confidence                  112477899999999 665544333 34566665 33221  1111 122356789999999987777788899


Q ss_pred             EEEEcCCC--ceee--eeccccc------cCeEEEEECCCCCEEE-EEEecCeEEEEECCCc---cceecccccccCCCe
Q psy13076        244 IAVFEGPP--FKFK--MTKQEHS------RFVQAVRYSPSGSHFA-SAGFDGKVFLYDGASA---DLVSELGNPAHKGGV  309 (423)
Q Consensus       244 i~~~~~~~--~~~~--~~~~~~~------~~i~~l~~s~~g~~l~-s~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~i  309 (423)
                      +.+|+...  .++.  .......      ..+..++|+|+|++|+ +...++.|.+|++...   +.+..+  ..+...+
T Consensus       211 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~--~~~~~~~  288 (347)
T 3hfq_A          211 IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI--STEGDFP  288 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE--ECSSSCC
T ss_pred             EEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE--ecCCCCc
Confidence            99997542  2221  1111111      3478899999999874 4556899999998632   222222  2344567


Q ss_pred             EEEEECCCCCeEEEEeCC-CcEEEE--ecCCcce
Q psy13076        310 YAVAWKPDGTQLLTASGD-KTCKLW--DIETKSA  340 (423)
Q Consensus       310 ~~l~~~~~~~~l~s~s~d-~~i~iw--d~~~~~~  340 (423)
                      .+++|+|+|++|++++.+ +.|.+|  |..++++
T Consensus       289 ~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          289 RDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             CEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             CeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            899999999988887764 899999  5455554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=5.2e-21  Score=188.49  Aligned_cols=271  Identities=11%  Similarity=0.046  Sum_probs=186.7

Q ss_pred             cceEEEEEECCCCCEEEEEcc-CCcEEEEEcCCCceeEEeeecCCC-CCeeEEEECCCCCeEEEEEc-CCceeeEEEeec
Q psy13076        131 SCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIG-GPIKDIAWSPDNQRMVVVGE-GRERFGHVFMSE  207 (423)
Q Consensus       131 ~~~i~~~~~sp~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~~~~~~~-~~~~~~~~~~~~  207 (423)
                      ..+|.+++|+|||++||+++. |++++||++..++...   ..... ..+..++|+|| +.+++... .......+|...
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE---CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe---eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence            457999999999999999887 9999999986554321   22222 46889999999 55544442 122223454443


Q ss_pred             C---CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec-
Q psy13076        208 T---GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-  283 (423)
Q Consensus       208 ~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-  283 (423)
                      .   +... .+... ......+|+|++...+++...++.+.+|+....+....... ..  .+++|+|||+++++++.+ 
T Consensus        97 ~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~--~~~~~spDG~~la~~~~~~  171 (582)
T 3o4h_A           97 TSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG--FGFVSDIRGDLIAGLGFFG  171 (582)
T ss_dssp             TTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS--CEEEEEEETTEEEEEEEEE
T ss_pred             ccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC--ceEEECCCCCEEEEEEEcC
Confidence            3   2222 22221 23346688998876555555555566998765554333222 22  688999999999988887 


Q ss_pred             ---CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCC--cEEEEecCCcceeeeeeeCceeEeeEEE--
Q psy13076        284 ---GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK--TCKLWDIETKSAVSEFLMGNQVEDQQVS--  356 (423)
Q Consensus       284 ---g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~--~i~iwd~~~~~~i~~~~~~~~~~~~~~~--  356 (423)
                         +.|++||..+++.. .+  ..|.+.+..++|+|||++|+++..++  .|++||+.+++.. .+ ...........  
T Consensus       172 ~~~~~i~~~d~~~g~~~-~l--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~  246 (582)
T 3o4h_A          172 GGRVSLFTSNLSSGGLR-VF--DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL-ELPSKDFSSYRPT  246 (582)
T ss_dssp             TTEEEEEEEETTTCCCE-EE--CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC-CCSCSHHHHHCCS
T ss_pred             CCCeEEEEEcCCCCCce-Ee--ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec-cCCCcChhhhhhc
Confidence               78999999887754 44  34677889999999999999888888  8999999988765 22 22111111122  


Q ss_pred             ------EEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCc---EEEeeCC
Q psy13076        357 ------CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGF---ITRWNAK  422 (423)
Q Consensus       357 ------~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~---i~~W~~~  422 (423)
                            .+++|..+++++.++.+++|++  + ..   ...+.+.|.+++|+ +++++++++.+.+   +.+||..
T Consensus       247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~~---~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          247 AITWLGYLPDGRLAVVARREGRSAVFID--G-ER---VEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEEEECTTSCEEEEEEETTEEEEEET--T-EE---ECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             cccceeEcCCCcEEEEEEcCCcEEEEEE--C-Ce---eccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence                  5678977788899999999998  2 22   22455789999999 9999998887744   6666653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=1.8e-19  Score=165.61  Aligned_cols=268  Identities=13%  Similarity=0.088  Sum_probs=172.4

Q ss_pred             cCCcEEEEEcCC--CceeEEeeecCCCCCeeEEEECCCCCeEEEEEc-CCceeeEEEeecCCc--ceecccCCCcceeEE
Q psy13076        151 ISGKVRIWDTVN--KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE-GRERFGHVFMSETGT--SVGEISGQSKPINSC  225 (423)
Q Consensus       151 ~d~~i~vwd~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~  225 (423)
                      .++.|.+|++..  ++... .........+..++|+|+|+ +++++. +......+|..+.+.  .+..+..+...+..+
T Consensus        14 ~~~~i~v~~~d~~tg~~~~-~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~   91 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTN-DGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV   91 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEE-EEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred             CCCCEEEEEEcCCCCeEEE-eeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence            356788887654  33222 11122234567899999999 666554 234445566665544  333334456678899


Q ss_pred             EEecCCCeeEEEEeCCCeEEEEcCC---Cceeeeeccc---------cccCeEEEEECCCCCEEEEEEecCeEEEEECC-
Q psy13076        226 DFKPSRPFRIITGSEDNTIAVFEGP---PFKFKMTKQE---------HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA-  292 (423)
Q Consensus       226 ~~~~~~~~~~~s~s~d~~i~~~~~~---~~~~~~~~~~---------~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~-  292 (423)
                      +|+|++.+++++...++.+.+|+..   ..........         ....+.+++|+|+|+++++...++.|.+|+.. 
T Consensus        92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~  171 (347)
T 3hfq_A           92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD  171 (347)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence            9999998755555578999999864   2222111111         12347789999999966666678899999988 


Q ss_pred             Cccceec--ccccccCCCeEEEEECCCCCeEEE-EeCCCcEEEEecCC--cce--eeeeeeCc-----eeEeeEEEEEec
Q psy13076        293 SADLVSE--LGNPAHKGGVYAVAWKPDGTQLLT-ASGDKTCKLWDIET--KSA--VSEFLMGN-----QVEDQQVSCLWQ  360 (423)
Q Consensus       293 ~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~s-~s~d~~i~iwd~~~--~~~--i~~~~~~~-----~~~~~~~~~~~~  360 (423)
                      +++....  +.. .....+..++|+|+|++|++ +..++.|++|++..  ++.  +.......     ......+.+.++
T Consensus       172 ~g~~~~~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd  250 (347)
T 3hfq_A          172 AGQLSEQSVLTM-EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD  250 (347)
T ss_dssp             TSCEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred             CCcEEEeeeEEc-CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence            4443211  111 12235788999999996655 56688999999874  432  11111111     022445667789


Q ss_pred             CcEEE-EEeCCCcEEEEecCCCC--CceEEeccCCCceeEEEecCCCCeEEEecC-CCcEEEeeC
Q psy13076        361 GDYLL-TVSLSGFISYLDVNNPS--TPIRVIKGHNKPITALALSPDRGTVFTGSH-DGFITRWNA  421 (423)
Q Consensus       361 g~~l~-~~~~~~~i~~~~~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~-D~~i~~W~~  421 (423)
                      |++|+ +...++.+.+|++....  ..+..+..|...++.++|+||+++|++++. ++.|.+|++
T Consensus       251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            99884 55678999999986322  234445566777999999999998877765 589999943

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=4.9e-19  Score=163.91  Aligned_cols=287  Identities=13%  Similarity=0.181  Sum_probs=174.2

Q ss_pred             EEEEEecc--ceEEEEeccCCCCceeecc----cccCceeEEEEeCCCCeEEEecCCCceEEeecC-CcceeecccCCCC
Q psy13076         18 YLLTVSLS--GFISYLDVNNPSTPIRVIK----GHNKPITALALSPDRGTVFTGSHDGFITRWNAK-TEYIFATLPRTQR   90 (423)
Q Consensus        18 ~~~~~~~d--g~i~~~d~~~~~~~~~~~~----gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~-~~~~~~~~~~~~~   90 (423)
                      +++.|++.  +.|.+++++.....+..+.    ++...+..++|+|++++|++++.+ +|.+|++. ++++.........
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            34556654  5788887753333232222    234578899999999999999888 99999997 6665432221111


Q ss_pred             CCceEEeeCCCCCe-EEE-e--------------cCCeEEEEecC-CCccccccc----CCcceEEEEEECCCCCEEEEE
Q psy13076         91 GQPIVLGGDPKGKN-FLY-T--------------NGNSVIIRNIE-NPAISDIYT----EHSCAVNVAKYSPSGFYIASG  149 (423)
Q Consensus        91 ~~~~~~~~~~~~~~-~~~-~--------------~~~~~~i~~~~-~~~~~~~~~----~h~~~i~~~~~sp~~~~l~s~  149 (423)
                      +.+..+.++|+|+. +++ .              .+..+.+|+++ ++++...+.    .+...++.++|+|||++++++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            23444677899985 332 2              35678999986 455543333    245678999999999988876


Q ss_pred             cc-CCcEEEEEcC-CCceeEEeeec--CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEE
Q psy13076        150 DI-SGKVRIWDTV-NKEHILKNEFH--PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSC  225 (423)
Q Consensus       150 ~~-d~~i~vwd~~-~~~~~~~~~~~--~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  225 (423)
                      +. ++.|++|++. +++........  .....+..++|+|+|++++++..... ...++..+..                
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~-~v~v~~~~~~----------------  225 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN-RICEYVIDPA----------------  225 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT-EEEEEEECTT----------------
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC-eEEEEEEeCC----------------
Confidence            64 6899999997 55432222221  12345788889999887766543221 1122221100                


Q ss_pred             EEecCCCeeEEEEeCCCeEEEEc-CCCceeeeecccccc------CeEEEE-ECCCCCEEEEEEecC------eEEEEEC
Q psy13076        226 DFKPSRPFRIITGSEDNTIAVFE-GPPFKFKMTKQEHSR------FVQAVR-YSPSGSHFASAGFDG------KVFLYDG  291 (423)
Q Consensus       226 ~~~~~~~~~~~s~s~d~~i~~~~-~~~~~~~~~~~~~~~------~i~~l~-~s~~g~~l~s~s~dg------~i~vwd~  291 (423)
                          .+.....       +.... .+.     ....+..      .+..++ |+|||++|++++.+.      .|.+|++
T Consensus       226 ----~g~~~~~-------~~~~~~~~~-----~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          226 ----THMPVYT-------HHSFPLIPP-----GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             ----TCCEEEE-------EEEEESSCT-----TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             ----CCcEEEc-------cceEEcCCC-----CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence                0000000       00000 000     0011121      467899 999999988776543      8999998


Q ss_pred             C-Cccceeccc-ccccCCCeEEEEECC---CCCeEEEEeCC-CcEEEEecCCc
Q psy13076        292 A-SADLVSELG-NPAHKGGVYAVAWKP---DGTQLLTASGD-KTCKLWDIETK  338 (423)
Q Consensus       292 ~-~~~~~~~~~-~~~~~~~i~~l~~~~---~~~~l~s~s~d-~~i~iwd~~~~  338 (423)
                      . +++...... ...+...+..++|+|   +|++|++++.+ ++|++|++...
T Consensus       290 ~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          290 RDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            6 555332111 112334466789999   89999998764 89999998765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=1.1e-17  Score=154.59  Aligned_cols=294  Identities=13%  Similarity=0.110  Sum_probs=184.8

Q ss_pred             CCEEEEEe----ccceEEEEeccCCCCceeec-ccccCceeEEEEeCCCCeEEEecCC----CceEEeecCC--cce--e
Q psy13076         16 GDYLLTVS----LSGFISYLDVNNPSTPIRVI-KGHNKPITALALSPDRGTVFTGSHD----GFITRWNAKT--EYI--F   82 (423)
Q Consensus        16 ~~~~~~~~----~dg~i~~~d~~~~~~~~~~~-~gh~~~V~~l~~~~~~~~l~sg~~D----~~i~vW~~~~--~~~--~   82 (423)
                      ..+++.++    .++.|.+|+++.....+..+ ..|...+..++|+|++++|++++.+    +.|++|+++.  +.+  +
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            34555554    35789999886433222221 1267788899999999999998876    8999998765  432  2


Q ss_pred             ecccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCCCcccccc--------------cCCcceEEEEEECCCCCEE
Q psy13076         83 ATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIY--------------TEHSCAVNVAKYSPSGFYI  146 (423)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~--------------~~h~~~i~~~~~sp~~~~l  146 (423)
                      .... .....+..+..  +++.++..+  +..+.+|+++.......+              ..+...+++++|+|+|+++
T Consensus        93 ~~~~-~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l  169 (361)
T 3scy_A           93 NTQK-TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL  169 (361)
T ss_dssp             EEEE-CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred             eEec-cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence            2111 12234445555  676665553  568999998643222111              1123346889999999977


Q ss_pred             EEEc-cCCcEEEEEcCCCce------eE-----EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc--e
Q psy13076        147 ASGD-ISGKVRIWDTVNKEH------IL-----KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS--V  212 (423)
Q Consensus       147 ~s~~-~d~~i~vwd~~~~~~------~~-----~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  212 (423)
                      +.++ .++.|++|++.....      +.     .............++|+|+|++++++..... ...+|....+..  +
T Consensus       170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~-~v~v~~~~~g~~~~~  248 (361)
T 3scy_A          170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG-TVIAFRYADGMLDEI  248 (361)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC-EEEEEEEETTEEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC-eEEEEEecCCceEEe
Confidence            6554 578999998875431      11     1111223445789999999998888764433 345666654432  2


Q ss_pred             ec---ccCCCcceeEEEEecCCCeeEEEEeC-CCeEEEEcCC--Cce--eeeeccccccCeEEEEECCCCCEEEEEE-ec
Q psy13076        213 GE---ISGQSKPINSCDFKPSRPFRIITGSE-DNTIAVFEGP--PFK--FKMTKQEHSRFVQAVRYSPSGSHFASAG-FD  283 (423)
Q Consensus       213 ~~---~~~~~~~i~~~~~~~~~~~~~~s~s~-d~~i~~~~~~--~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~d  283 (423)
                      ..   ...+...+..++|+|++.+++++... ++.+.+|+..  ..+  ....... ...+..++|+|+|++|++++ .+
T Consensus       249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~  327 (361)
T 3scy_A          249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT  327 (361)
T ss_dssp             EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred             EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence            22   22333456799999999985565555 6899999864  222  2222222 44678899999999988887 57


Q ss_pred             CeEEEE--ECCCccceecccccccCCCeEEEEEC
Q psy13076        284 GKVFLY--DGASADLVSELGNPAHKGGVYAVAWK  315 (423)
Q Consensus       284 g~i~vw--d~~~~~~~~~~~~~~~~~~i~~l~~~  315 (423)
                      +.|.+|  |..+++.... ....+...+.|++|.
T Consensus       328 ~~v~v~~~d~~~g~~~~~-~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          328 NVIQIFERDQATGLLTDI-KKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TEEEEEEECTTTCCEEEC-SCCEECSSEEEEEEE
T ss_pred             CCEEEEEEECCCCcEeec-ceeeeCCCCeEEEEc
Confidence            889996  5556654432 222345578888885

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=1.3e-19  Score=171.35  Aligned_cols=249  Identities=16%  Similarity=0.192  Sum_probs=156.9

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCC---------Ccee-----ecccccCceeEEEEeCCCCeEE----EecCCC
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPS---------TPIR-----VIKGHNKPITALALSPDRGTVF----TGSHDG   69 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~---------~~~~-----~~~gh~~~V~~l~~~~~~~~l~----sg~~D~   69 (423)
                      ..+++.++++++++++.|| |++|+...-.         ....     ....|.++|.+++|+|++++|+    +|+.|+
T Consensus        40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~  118 (434)
T 2oit_A           40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS  118 (434)
T ss_dssp             BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred             cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence            4678888999999999998 8888753100         0010     1123567899999999999999    899999


Q ss_pred             ceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC-CCEEEE
Q psy13076         70 FITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIAS  148 (423)
Q Consensus        70 ~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s  148 (423)
                      +|++||+++....    .......                           -.....+.+|...|.+++|+|+ +.++++
T Consensus       119 ~v~iwd~~~~~~~----~~~~~~~---------------------------~~~~~~~~~h~~~V~~v~~~p~~~~~las  167 (434)
T 2oit_A          119 IIAFFDVRTFSNE----AKQQKRP---------------------------FAYHKLLKDAGGMVIDMKWNPTVPSMVAV  167 (434)
T ss_dssp             EEEEEEHHHHHCT----TCSSCCC---------------------------SEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred             eEEEEEccccccC----CcCCcce---------------------------eeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence            9999998753100    0000000                           0012345689999999999997 899999


Q ss_pred             EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEe
Q psy13076        149 GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFK  228 (423)
Q Consensus       149 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  228 (423)
                      ++.|++|++||+++......  ...+...|.+++|+|+|++                                       
T Consensus       168 ~s~Dg~v~iwD~~~~~~~~~--~~~~~~~v~~v~wspdg~~---------------------------------------  206 (434)
T 2oit_A          168 CLADGSIAVLQVTETVKVCA--TLPSTVAVTSVCWSPKGKQ---------------------------------------  206 (434)
T ss_dssp             EETTSCEEEEEESSSEEEEE--EECGGGCEEEEEECTTSSC---------------------------------------
T ss_pred             EECCCeEEEEEcCCCcceee--ccCCCCceeEEEEcCCCCE---------------------------------------
Confidence            99999999999987643221  1223345566666665543                                       


Q ss_pred             cCCCeeEEEEeCCCeEEEEcCCCceeeeecc-------ccccCeEEEEECCCCCEEEEEE-ecC------eEEEEECCCc
Q psy13076        229 PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ-------EHSRFVQAVRYSPSGSHFASAG-FDG------KVFLYDGASA  294 (423)
Q Consensus       229 ~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~-------~~~~~i~~l~~s~~g~~l~s~s-~dg------~i~vwd~~~~  294 (423)
                            +++++.|+.|++|+.+ ........       .|...+.+++|++++.++++.+ .||      .+++|++...
T Consensus       207 ------lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          207 ------LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ------EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ------EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                  6677888899999876 22222222       2234789999999988775533 443      3889998754


Q ss_pred             cc-----eeccccc-----ccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecC
Q psy13076        295 DL-----VSELGNP-----AHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIE  336 (423)
Q Consensus       295 ~~-----~~~~~~~-----~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~  336 (423)
                      +.     ...+...     .....-.-+..-++.+++++++. ...|.+....
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          280 EEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             TTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             CCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence            21     1111111     11122223333466666665544 5557777643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=3.7e-19  Score=163.24  Aligned_cols=281  Identities=12%  Similarity=0.079  Sum_probs=180.7

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeeccccc-CceeEEEEeCCCCeE-EEecCCCceEEeecCCcceeecccC
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN-KPITALALSPDRGTV-FTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      +++..++.++++++.++.|++||+.+ .+....+..+. ..+..++|+|+++++ +++..++.|.+||.++++....+..
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCC-CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45556788999999999999999976 44555665443 257899999999854 5677899999999998877655532


Q ss_pred             CC-----CCCceEEeeCCCCCeEEEec-------------CCeEEEEecCCCcccc---cccCCcceEEEEEECCCCCEE
Q psy13076         88 TQ-----RGQPIVLGGDPKGKNFLYTN-------------GNSVIIRNIENPAISD---IYTEHSCAVNVAKYSPSGFYI  146 (423)
Q Consensus        88 ~~-----~~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~---~~~~h~~~i~~~~~sp~~~~l  146 (423)
                      ..     ...+..+.++|+|+.+++..             ...+.+|++++++...   .+. +...+.+++|+|+|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence            21     11134567889998877765             4789999998754433   233 334578899999999 5


Q ss_pred             EEEccCCcEEEEEcCCCceeEEeeecCCCC----------------------CeeEEEECCCCCeEEEEEcCCceeeEE-
Q psy13076        147 ASGDISGKVRIWDTVNKEHILKNEFHPIGG----------------------PIKDIAWSPDNQRMVVVGEGRERFGHV-  203 (423)
Q Consensus       147 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~----------------------~v~~v~~s~~~~~~~~~~~~~~~~~~~-  203 (423)
                      +.++.  .|.+||..+++............                      ....+++++++........  .....+ 
T Consensus       162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~  237 (349)
T 1jmx_B          162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD--LLYGYLS  237 (349)
T ss_dssp             EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE--EEEEEEE
T ss_pred             EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc--cceeEEE
Confidence            55543  49999998776544322211000                      2234566655422110000  000011 


Q ss_pred             EeecCCc-ceecccCCCcceeEEEEec-CCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE
Q psy13076        204 FMSETGT-SVGEISGQSKPINSCDFKP-SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG  281 (423)
Q Consensus       204 ~~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s  281 (423)
                      +...+++ ....+......+..+.++| ++.+ ++++  ++.|.+||....+....... ...+..++|+|+|++|++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~-l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECSSCTTE-EEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEES
T ss_pred             EeccCCcEEecccccCCCcceeeEecCCCCCE-EEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEec
Confidence            1111111 1111222344677889999 8876 4444  88999999877665444432 23467899999999888888


Q ss_pred             ecCeEEEEECCCccceeccc
Q psy13076        282 FDGKVFLYDGASADLVSELG  301 (423)
Q Consensus       282 ~dg~i~vwd~~~~~~~~~~~  301 (423)
                      .++.|.+||..+++.+..+.
T Consensus       314 ~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          314 TFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             BSSEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEeccccceeeeee
Confidence            89999999999888776654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=7.3e-18  Score=155.71  Aligned_cols=266  Identities=14%  Similarity=0.150  Sum_probs=170.2

Q ss_pred             cceEEEEEECCCCCEEEEEccC----CcEEEEEcCCC--ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        131 SCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNK--EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       131 ~~~i~~~~~sp~~~~l~s~~~d----~~i~vwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      ...+..++|+|+|++|++++.+    +.|.+|++...  +................+++  +++.++++..... ...+|
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~-~v~~~  125 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGG-SITVF  125 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTT-EEEEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCC-EEEEE
Confidence            3455678999999999998886    79999998653  32222223323345667777  8888887765443 34556


Q ss_pred             eecCCcceeccc--------------CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce-------e------eee
Q psy13076        205 MSETGTSVGEIS--------------GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-------F------KMT  257 (423)
Q Consensus       205 ~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~-------~------~~~  257 (423)
                      .......+..+.              .+...+.+++|+|++.+++++...++.+.+|+.....       +      ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            554332222111              1122357899999999867777778999999754221       1      111


Q ss_pred             ccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccc--eeccc-ccccCCCeEEEEECCCCCeEEEEeC--CCcEE
Q psy13076        258 KQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADL--VSELG-NPAHKGGVYAVAWKPDGTQLLTASG--DKTCK  331 (423)
Q Consensus       258 ~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~--~~~~~-~~~~~~~i~~l~~~~~~~~l~s~s~--d~~i~  331 (423)
                      .......+..++|+|+|+++++++ .++.|.+|+..+++.  +..+. ...+.....+++|+|+|++|+++..  +++|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            222344578899999999887777 589999999886643  22221 1223345789999999998866655  48999


Q ss_pred             EEecC--Ccc--eeeeeeeCceeEeeEEEEEecCcEEEEEe-CCCcEEEEecCCCCCceEEe--ccCCCceeEEEec
Q psy13076        332 LWDIE--TKS--AVSEFLMGNQVEDQQVSCLWQGDYLLTVS-LSGFISYLDVNNPSTPIRVI--KGHNKPITALALS  401 (423)
Q Consensus       332 iwd~~--~~~--~i~~~~~~~~~~~~~~~~~~~g~~l~~~~-~~~~i~~~~~~~~~~~~~~~--~~h~~~v~~i~~s  401 (423)
                      +|++.  +++  .+..+..  ......+.+.++|++|++++ .++.+.+|.+......+...  ..+...+.|++|.
T Consensus       286 v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            99995  344  2222222  12234566778999988877 67889887654322223332  2345678899886

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=3.5e-19  Score=166.10  Aligned_cols=312  Identities=11%  Similarity=0.035  Sum_probs=182.5

Q ss_pred             EEeccCCCCceeecccccCceeE-----EEEeCCCCeEEEecC-CCc--eEEeecCCcceeecccCCCCCCceEEeeCCC
Q psy13076         30 YLDVNNPSTPIRVIKGHNKPITA-----LALSPDRGTVFTGSH-DGF--ITRWNAKTEYIFATLPRTQRGQPIVLGGDPK  101 (423)
Q Consensus        30 ~~d~~~~~~~~~~~~gh~~~V~~-----l~~~~~~~~l~sg~~-D~~--i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (423)
                      ++|..+ ...+..+..|...+..     .+|+|||++|+.++. |+.  |.+||+++++....                 
T Consensus        14 ~~~~~~-g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-----------------   75 (388)
T 3pe7_A           14 YQDAST-GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-----------------   75 (388)
T ss_dssp             EECTTT-CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-----------------
T ss_pred             EecCCC-CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-----------------
Confidence            345544 4456677777766665     889999998888877 664  67777776544321                 


Q ss_pred             CCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEE
Q psy13076        102 GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDI  181 (423)
Q Consensus       102 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v  181 (423)
                                               ..+|...+....|+|||++|+.++.++.|.+||+.+++.......+  ...+...
T Consensus        76 -------------------------t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~--~~~~~~~  128 (388)
T 3pe7_A           76 -------------------------TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP--AEWVGYG  128 (388)
T ss_dssp             -------------------------CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC--TTEEEEE
T ss_pred             -------------------------eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech--hhccccc
Confidence                                     1223333334579999999999999999999999887654333322  2333333


Q ss_pred             --EECCCCCeEEEEEc--------------------CCceeeEEEeecCCcceecccCCCcceeEEEEec-CCCeeEEEE
Q psy13076        182 --AWSPDNQRMVVVGE--------------------GRERFGHVFMSETGTSVGEISGQSKPINSCDFKP-SRPFRIITG  238 (423)
Q Consensus       182 --~~s~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~s~  238 (423)
                        .++|+++.++....                    .......+++..++. ...+..+...+..+.|+| ++..++.+.
T Consensus       129 ~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~  207 (388)
T 3pe7_A          129 TWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPYDDSTVAFCH  207 (388)
T ss_dssp             EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETTEEEEEEEEE
T ss_pred             ceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-eEEeecCCccccccEECCCCCCEEEEEE
Confidence              34899998875431                    111223344444443 334444555678899999 876533333


Q ss_pred             eC-----CCeEEEEcCCCceeeeeccccc-cCeEEEEECCCCCEEEEEEec-C----eEEEEECCCccceecccccccCC
Q psy13076        239 SE-----DNTIAVFEGPPFKFKMTKQEHS-RFVQAVRYSPSGSHFASAGFD-G----KVFLYDGASADLVSELGNPAHKG  307 (423)
Q Consensus       239 s~-----d~~i~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~s~s~d-g----~i~vwd~~~~~~~~~~~~~~~~~  307 (423)
                      ..     ...|.+++.............. ..+..++|+|||+.|+..+.+ +    .|++||+.+++.........+..
T Consensus       208 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~  287 (388)
T 3pe7_A          208 EGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSH  287 (388)
T ss_dssp             CSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEE
T ss_pred             ecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCcee
Confidence            22     3367788754433222222221 357788999999987665543 2    39999998876422111111100


Q ss_pred             C---eEEEEECCCCCeEEEE---------eCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEE
Q psy13076        308 G---VYAVAWKPDGTQLLTA---------SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISY  375 (423)
Q Consensus       308 ~---i~~l~~~~~~~~l~s~---------s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~  375 (423)
                      .   ...++|+|||+.|+..         ..+..|.+||+.+++.. .+....                           
T Consensus       288 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---------------------------  339 (388)
T 3pe7_A          288 LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHD---------------------------  339 (388)
T ss_dssp             EEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECC---------------------------
T ss_pred             eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-Eecccc---------------------------
Confidence            0   1123689999887754         34567888888765421 110000                           


Q ss_pred             EecCCCCCceEEeccCCCceeEEEecCCCCeEEEec-CCCcEEEeeC
Q psy13076        376 LDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS-HDGFITRWNA  421 (423)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s-~D~~i~~W~~  421 (423)
                            .............+.+++|+||++.|+.++ .++...+|.+
T Consensus       340 ------~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          340 ------TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             ------CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ------CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence                  000000001122477889999999887655 5788888754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=4.7e-18  Score=171.99  Aligned_cols=330  Identities=10%  Similarity=0.082  Sum_probs=206.7

Q ss_pred             ceeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCc-----eeEEEEeCCCCeEEEecCC---------CceE
Q psy13076          7 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP-----ITALALSPDRGTVFTGSHD---------GFIT   72 (423)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~-----V~~l~~~~~~~~l~sg~~D---------~~i~   72 (423)
                      .+.++.++||.+++++  ||.|++||+.++ ++...+.+|...     ...++|||||++|+.++.+         +.+.
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYG-NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTC-CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCC-ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            4566666799999885  999999999864 445577777643     2347899999999999887         4556


Q ss_pred             EeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc-ccCCcceE-----------------
Q psy13076         73 RWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI-YTEHSCAV-----------------  134 (423)
Q Consensus        73 vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~h~~~i-----------------  134 (423)
                      +||++++++.. +. ...+......++|+|+.+++..++.+.+|++.++..... ..++...+                 
T Consensus        96 ~~d~~~~~~~~-l~-~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           96 IYDLNKRQLIT-EE-RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEETTTTEECC-SS-CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcEEE-cc-cCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            99999987643 22 123445678899999999999889999999988765543 22443322                 


Q ss_pred             EEEEECCCCCEEEEEccCC------------------------------------cEEEEEcCC---CceeEEeeec---
Q psy13076        135 NVAKYSPSGFYIASGDISG------------------------------------KVRIWDTVN---KEHILKNEFH---  172 (423)
Q Consensus       135 ~~~~~sp~~~~l~s~~~d~------------------------------------~i~vwd~~~---~~~~~~~~~~---  172 (423)
                      ..+.|||||++||..+.|.                                    +|++||+.+   ++........   
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~  253 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA  253 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence            3478999999999876432                                    477788877   5211111111   


Q ss_pred             ---CCCCCeeEEEECCCCCeEEEEEcCC--ceeeEEEeecCCc----c--eecc--cCCCccee-----EEEEecCCCee
Q psy13076        173 ---PIGGPIKDIAWSPDNQRMVVVGEGR--ERFGHVFMSETGT----S--VGEI--SGQSKPIN-----SCDFKPSRPFR  234 (423)
Q Consensus       173 ---~~~~~v~~v~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~----~--~~~~--~~~~~~i~-----~~~~~~~~~~~  234 (423)
                         .....+..++|+|||+.++......  .....+++.+++.    +  ...+  ..+...+.     ...|+|++..+
T Consensus       254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l  333 (740)
T 4a5s_A          254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF  333 (740)
T ss_dssp             HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred             cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence               1344578899999999666554332  2334556666665    1  1222  23443333     67899999875


Q ss_pred             EEEEe-CCC--eEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec-------CeEEEEECCCccceeccccc-
Q psy13076        235 IITGS-EDN--TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-------GKVFLYDGASADLVSELGNP-  303 (423)
Q Consensus       235 ~~s~s-~d~--~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~-  303 (423)
                      ++..+ .+|  .|++|+........ +....-.+..+. .++++.++..+..       ..|+..++..+.....+... 
T Consensus       334 ~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~  411 (740)
T 4a5s_A          334 YKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCEL  411 (740)
T ss_dssp             EEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTT
T ss_pred             EEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecccc
Confidence            52444 444  57777765443332 222233344432 2446655444432       24555555544332223211 


Q ss_pred             -ccCCCeEEEEECCCCCeEEEEeCC---CcEEEEecCCcceeee
Q psy13076        304 -AHKGGVYAVAWKPDGTQLLTASGD---KTCKLWDIETKSAVSE  343 (423)
Q Consensus       304 -~~~~~i~~l~~~~~~~~l~s~s~d---~~i~iwd~~~~~~i~~  343 (423)
                       ........+.|+|++++++.....   ..+.+++..+++.+..
T Consensus       412 ~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~  455 (740)
T 4a5s_A          412 NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRV  455 (740)
T ss_dssp             STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEE
T ss_pred             CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEE
Confidence             123567899999999987655443   3678888877655443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=2.5e-18  Score=159.10  Aligned_cols=255  Identities=14%  Similarity=0.167  Sum_probs=160.4

Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcC-CCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTV-NKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT  210 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (423)
                      ..+..++|+|+|+++++++.+ .|.+|++. +++........ ..+....++|+|+|+.+++...+...           
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-~~g~~~~~~~spdg~~l~~~~~~~~~-----------  106 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-IGGHPRANDADTNTRAIFLLAAKQPP-----------  106 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-CCSSGGGGCTTSCCEEEEEEECSSTT-----------
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-cCCCCccEEECCCCCEEEEEEecCCc-----------
Confidence            356788999999999999888 99999986 55433221211 11234567888988863322111000           


Q ss_pred             ceecccCCCcceeEEEEecCCCeeEEEEe----CCCeEEEEcCC-Cceeeeecc----ccccCeEEEEECCCCCEEEEEE
Q psy13076        211 SVGEISGQSKPINSCDFKPSRPFRIITGS----EDNTIAVFEGP-PFKFKMTKQ----EHSRFVQAVRYSPSGSHFASAG  281 (423)
Q Consensus       211 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~s----~d~~i~~~~~~-~~~~~~~~~----~~~~~i~~l~~s~~g~~l~s~s  281 (423)
                                            + ...+.    .++.+.+|+.. ..+......    .+...+..++|+|+|++++++.
T Consensus       107 ----------------------~-~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A          107 ----------------------Y-AVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             ----------------------C-CEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             ----------------------c-eeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence                                  0 00011    35556666543 122211111    2345688999999999888776


Q ss_pred             e-cCeEEEEECC-Cccce--ecccccccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecC--Ccceee---eeeeC-ce-
Q psy13076        282 F-DGKVFLYDGA-SADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIE--TKSAVS---EFLMG-NQ-  349 (423)
Q Consensus       282 ~-dg~i~vwd~~-~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~--~~~~i~---~~~~~-~~-  349 (423)
                      . ++.|++|+.. +++..  ..+....|...+..++|+|+|++|++++. +++|.+|++.  +++...   ..... .. 
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  243 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence            4 6799999998 66542  22221123456899999999999887765 7899999875  454321   11110 00 


Q ss_pred             ---e-------EeeEEE-EEecCcEEEEEeCC-C-----cEEEEecCCCCCceE---EeccCCCceeEEEecC---CCCe
Q psy13076        350 ---V-------EDQQVS-CLWQGDYLLTVSLS-G-----FISYLDVNNPSTPIR---VIKGHNKPITALALSP---DRGT  406 (423)
Q Consensus       350 ---~-------~~~~~~-~~~~g~~l~~~~~~-~-----~i~~~~~~~~~~~~~---~~~~h~~~v~~i~~sp---~~~~  406 (423)
                         .       ....+. ++++|++|+++..+ +     .|.+|++........   ....+...+..++|+|   |+++
T Consensus       244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~  323 (365)
T 1jof_A          244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred             CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE
Confidence               1       244566 77899988766533 2     799999863233222   1334566688999999   8999


Q ss_pred             EEEecC-CCcEEEeeCC
Q psy13076        407 VFTGSH-DGFITRWNAK  422 (423)
Q Consensus       407 l~s~s~-D~~i~~W~~~  422 (423)
                      |++++. ++.|++|+.+
T Consensus       324 l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          324 MAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEECSSSCEEEEEEEE
T ss_pred             EEEEEcCCCeEEEEEEc
Confidence            998876 4899999864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=1.5e-18  Score=161.81  Aligned_cols=277  Identities=13%  Similarity=0.099  Sum_probs=173.6

Q ss_pred             eEEEEeCCEEEEEec-cc--eEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc
Q psy13076         10 VSCLWQGDYLLTVSL-SG--FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP   86 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~-dg--~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~   86 (423)
                      .++++||++||.++. +|  .|++||+.+ .++.....+|...+..++|+|+++.|+.++.++.|++||+++++......
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-QVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTT-CEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCC-CceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            678889999999988 67  488888865 45555667777777778999999999999999999999998875432211


Q ss_pred             CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEE--EEECCCCCEEEE----------------
Q psy13076         87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV--AKYSPSGFYIAS----------------  148 (423)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~--~~~sp~~~~l~s----------------  148 (423)
                      .                                          +...+..  ..++|++++++.                
T Consensus       120 ~------------------------------------------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~  157 (388)
T 3pe7_A          120 V------------------------------------------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK  157 (388)
T ss_dssp             C------------------------------------------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred             c------------------------------------------hhhcccccceeECCCCCeeccccccCcccccccccch
Confidence            1                                          0111111  122455555442                


Q ss_pred             ------EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC-CCCeEEEEEcCCc--eeeEEEeec-CCcceecccCC
Q psy13076        149 ------GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMVVVGEGRE--RFGHVFMSE-TGTSVGEISGQ  218 (423)
Q Consensus       149 ------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~  218 (423)
                            .+.+..|.+||+.+++.....   .....+..++|+| ||+.++.+.....  ....++..+ .+.....+..+
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~~~l~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  234 (388)
T 3pe7_A          158 FHEFYFTKPCCRLMRVDLKTGESTVIL---QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH  234 (388)
T ss_dssp             HHHHGGGCCCEEEEEEETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC
T ss_pred             hhhhhccCCcceEEEEECCCCceEEee---cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC
Confidence                  224467999998877543221   2235678999999 9999888775421  112333332 23333444433


Q ss_pred             C--cceeEEEEecCCCeeEEEEeCCC----eEEEEcCCCceeee--eccccccC---eEEEEECCCCCEEEEE-------
Q psy13076        219 S--KPINSCDFKPSRPFRIITGSEDN----TIAVFEGPPFKFKM--TKQEHSRF---VQAVRYSPSGSHFASA-------  280 (423)
Q Consensus       219 ~--~~i~~~~~~~~~~~~~~s~s~d~----~i~~~~~~~~~~~~--~~~~~~~~---i~~l~~s~~g~~l~s~-------  280 (423)
                      .  ..+....|+|++..++..+..++    .|++|+....+...  ....+...   ...++|+|||+.|+..       
T Consensus       235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  314 (388)
T 3pe7_A          235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY  314 (388)
T ss_dssp             CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----------
T ss_pred             CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccc
Confidence            3  35778899999986544444322    39999976554322  11111000   1123799999987754       


Q ss_pred             --EecCeEEEEECCCccceecccccccCC-----------CeEEEEECCCCCeEEEEe-CCCcEEEEec
Q psy13076        281 --GFDGKVFLYDGASADLVSELGNPAHKG-----------GVYAVAWKPDGTQLLTAS-GDKTCKLWDI  335 (423)
Q Consensus       281 --s~dg~i~vwd~~~~~~~~~~~~~~~~~-----------~i~~l~~~~~~~~l~s~s-~d~~i~iwd~  335 (423)
                        ..+..|++||..+++. ..+.  .+..           .+..++|+|||++|+..+ .++...||.+
T Consensus       315 ~~~~~~~i~~~d~~~~~~-~~l~--~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          315 KIENDPFLYVFNMKNGTQ-HRVA--RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             --CCCCEEEEEETTTTEE-EEEE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ccCCCCEEEEEeccCCce-EEec--cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence              4456899999988764 3332  2333           467889999999887665 4677777754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.80  E-value=3.9e-18  Score=161.19  Aligned_cols=205  Identities=19%  Similarity=0.180  Sum_probs=151.2

Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcCCC----------ceeEE---eeecCCCCCeeEEEECCCCCeEEEE--EcC
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNK----------EHILK---NEFHPIGGPIKDIAWSPDNQRMVVV--GEG  196 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~----------~~~~~---~~~~~~~~~v~~v~~s~~~~~~~~~--~~~  196 (423)
                      ..++.+++++++.++++++.|+ +++|+....          .....   .....+..+|.+++|+|++++++++  +.+
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            3567889999999999999887 999875311          00000   0112235679999999999998864  345


Q ss_pred             CceeeEEEeecCC--------cc---eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCe
Q psy13076        197 RERFGHVFMSETG--------TS---VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFV  265 (423)
Q Consensus       197 ~~~~~~~~~~~~~--------~~---~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i  265 (423)
                      .+...++|+....        +.   +..+.+|...|.+++|+|+....+++++.|+++++||.+..........|...|
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v  195 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV  195 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence            5666778876543        11   344566888999999999865669999999999999987765555556688899


Q ss_pred             EEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc-----ccCCCeEEEEECCCCCeEEEE-eCCC------cEEEE
Q psy13076        266 QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----AHKGGVYAVAWKPDGTQLLTA-SGDK------TCKLW  333 (423)
Q Consensus       266 ~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~s~-s~d~------~i~iw  333 (423)
                      .+++|+|+|++|++|+.||.|++||.+ ++....+...     .|...+.+++|++++.++++. ..||      .+++|
T Consensus       196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~  274 (434)
T 2oit_A          196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA  274 (434)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence            999999999999999999999999987 4433333211     233478999999998887654 3443      38999


Q ss_pred             ecCCc
Q psy13076        334 DIETK  338 (423)
Q Consensus       334 d~~~~  338 (423)
                      ++...
T Consensus       275 ~l~~~  279 (434)
T 2oit_A          275 LLPKK  279 (434)
T ss_dssp             ECCCT
T ss_pred             EeccC
Confidence            99765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=6e-18  Score=158.02  Aligned_cols=313  Identities=11%  Similarity=0.089  Sum_probs=187.2

Q ss_pred             EEeccCCCCceeecccccC-----ceeEEEEeCCCCeEEEecC---CCceEEeecCCcceeecccCCCCCCceEEeeCCC
Q psy13076         30 YLDVNNPSTPIRVIKGHNK-----PITALALSPDRGTVFTGSH---DGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPK  101 (423)
Q Consensus        30 ~~d~~~~~~~~~~~~gh~~-----~V~~l~~~~~~~~l~sg~~---D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (423)
                      ++|..++ ..+..+..+..     .+..++|+|+|++|+..+.   +..|.+||.++++.....                
T Consensus        14 ~~d~~~g-~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~----------------   76 (396)
T 3c5m_A           14 FVDSDTQ-VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT----------------   76 (396)
T ss_dssp             EECTTTC-CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC----------------
T ss_pred             eecCCCC-cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee----------------
Confidence            3455443 33445544433     3788899999998776543   236777787765432211                


Q ss_pred             CCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEE
Q psy13076        102 GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDI  181 (423)
Q Consensus       102 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v  181 (423)
                                                .++........|+|||++|+..+.++.|.+||+.+++........  ..     
T Consensus        77 --------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~--~~-----  123 (396)
T 3c5m_A           77 --------------------------EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD--EE-----  123 (396)
T ss_dssp             --------------------------CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC--TT-----
T ss_pred             --------------------------cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc--cc-----
Confidence                                      011111122568999999999999999999998876543222211  11     


Q ss_pred             EECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEE----eCCCeEEEEcCCCceeeee
Q psy13076        182 AWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG----SEDNTIAVFEGPPFKFKMT  257 (423)
Q Consensus       182 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~----s~d~~i~~~~~~~~~~~~~  257 (423)
                       |+|+++.++.....  ....++                 ...+.++|++..+++..    ..+..|++|+....+....
T Consensus       124 -~~~~g~~l~~~~~~--~~~~~~-----------------~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~  183 (396)
T 3c5m_A          124 -WKGYGTWVANSDCT--KLVGIE-----------------ILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI  183 (396)
T ss_dssp             -EEEEEEEEECTTSS--EEEEEE-----------------EEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred             -cCCCCCEEEeccCC--cccccc-----------------ccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence             55565554432211  000010                 11234566665433222    4566788898765443322


Q ss_pred             ccccccCeEEEEECC-CCCEEEEEEec------CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC---
Q psy13076        258 KQEHSRFVQAVRYSP-SGSHFASAGFD------GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD---  327 (423)
Q Consensus       258 ~~~~~~~i~~l~~s~-~g~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d---  327 (423)
                      . .+...+..+.|+| +|+.|+..+.+      ..|.+||...++.. .+........+..++|+|+|++|+.++.+   
T Consensus       184 ~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  261 (396)
T 3c5m_A          184 H-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQ  261 (396)
T ss_dssp             E-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred             c-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCC
Confidence            2 4556688999999 78877766643      36888887655432 23211112347789999999988777654   


Q ss_pred             --CcEEEEecCCcceeeeeeeCceeEeeEEEEEe-cCcEEEEEe----------------CCCcEEEEecCCCCCceEEe
Q psy13076        328 --KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLW-QGDYLLTVS----------------LSGFISYLDVNNPSTPIRVI  388 (423)
Q Consensus       328 --~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~-~g~~l~~~~----------------~~~~i~~~~~~~~~~~~~~~  388 (423)
                        +.|.+||+.+++........ ..  . ...++ +|+.++...                .+..+++||..+...  ..+
T Consensus       262 ~~~~l~~~d~~~g~~~~l~~~~-~~--~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l  335 (396)
T 3c5m_A          262 TDRVIYKANPETLENEEVMVMP-PC--S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKL  335 (396)
T ss_dssp             CCEEEEEECTTTCCEEEEEECC-SE--E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEE
T ss_pred             ccceEEEEECCCCCeEEeeeCC-CC--C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEc
Confidence              44999999887643322111 11  1 45567 898877654                246799999876543  344


Q ss_pred             ccCCC-----------ceeEEEecCCCCeEEEecC-CCcEEEee
Q psy13076        389 KGHNK-----------PITALALSPDRGTVFTGSH-DGFITRWN  420 (423)
Q Consensus       389 ~~h~~-----------~v~~i~~sp~~~~l~s~s~-D~~i~~W~  420 (423)
                      ..|..           .+..++|+||++.|+.++. ++...+|.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          336 CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence            45544           2677899999999876654 56666664

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.79  E-value=2.7e-16  Score=144.97  Aligned_cols=287  Identities=15%  Similarity=0.107  Sum_probs=195.4

Q ss_pred             CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc----------CCcEEEEEcCCCceeEEeeecC----CC
Q psy13076        110 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI----------SGKVRIWDTVNKEHILKNEFHP----IG  175 (423)
Q Consensus       110 ~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~~~----~~  175 (423)
                      ++.+.++|.++++....+..+..+  .++|+|||+++++++.          +++|.+||..+.+.........    ..
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g  107 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL  107 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred             cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence            357889999888887777766655  8999999999998863          6789999998766554333221    12


Q ss_pred             CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceec-ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-ce
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FK  253 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-~~  253 (423)
                      .....++|+|||++++++.........+++.++++.+.. +.....  ..+.+.|.+...+++.+.|+.+..++... .+
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~  185 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSFMTICGDGGLLTINLGEDGK  185 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence            345679999999999988755445567777777766655 443221  22456676656678888899888886532 22


Q ss_pred             eee------eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccce--eccccc----ccC----CCeEEEEECCC
Q psy13076        254 FKM------TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV--SELGNP----AHK----GGVYAVAWKPD  317 (423)
Q Consensus       254 ~~~------~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~----~~~----~~i~~l~~~~~  317 (423)
                      ...      .......+ ..+.++|++..++..+.++.|.++|.......  ..+...    .+.    .....++|+|+
T Consensus       186 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          186 VASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             EEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             EeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence            220      11111111 12334577877777888999999998654321  111000    000    11123789999


Q ss_pred             CCeEEEEeC-----------CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC-Cce
Q psy13076        318 GTQLLTASG-----------DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPI  385 (423)
Q Consensus       318 ~~~l~s~s~-----------d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~-~~~  385 (423)
                      ++.+..+..           ..+|.+||+.+++.+.++..+.   ...+.+.++|++|+++.. +.|.+||..+.. +.+
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~  340 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL  340 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence            887776543           3489999999999988876655   566778889999888876 999999998852 334


Q ss_pred             EEeccCCCceeEEEecCCCC
Q psy13076        386 RVIKGHNKPITALALSPDRG  405 (423)
Q Consensus       386 ~~~~~h~~~v~~i~~sp~~~  405 (423)
                      +.+..+...-+.++++|+|+
T Consensus       341 ~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          341 RTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEETTSCSSEEEEEECCCSC
T ss_pred             EEeccCCCCcEEEEecCCCC
Confidence            55567778889999999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=8.2e-17  Score=160.94  Aligned_cols=294  Identities=11%  Similarity=-0.002  Sum_probs=178.9

Q ss_pred             eecccccCceeEEEEeCCCCeEEEe--cCCCceEEeecCCcceeecccCCCCC-C---------ceEEeeCCCCCe-EEE
Q psy13076         41 RVIKGHNKPITALALSPDRGTVFTG--SHDGFITRWNAKTEYIFATLPRTQRG-Q---------PIVLGGDPKGKN-FLY  107 (423)
Q Consensus        41 ~~~~gh~~~V~~l~~~~~~~~l~sg--~~D~~i~vW~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~-~~~  107 (423)
                      ..+.+|...|..++|+++.-.+++.  +.|+..++|....+.....+...... .         ...+..+|+|+. +++
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            3577899999999999887667777  77899999985332222222221111 1         122333599988 777


Q ss_pred             ecC--CeEEEEecC--C-CcccccccC-----CcceEEEEEECCCCCEEEEEccC----------CcEEEEEcCC-----
Q psy13076        108 TNG--NSVIIRNIE--N-PAISDIYTE-----HSCAVNVAKYSPSGFYIASGDIS----------GKVRIWDTVN-----  162 (423)
Q Consensus       108 ~~~--~~~~i~~~~--~-~~~~~~~~~-----h~~~i~~~~~sp~~~~l~s~~~d----------~~i~vwd~~~-----  162 (423)
                      ...  ..+.+++++  + +. ...+..     |...+..++|+|||++|++++.+          .+|.+||+.+     
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            764  345555554  2 33 334444     77889999999999999998877          5899999877     


Q ss_pred             -CceeEEeeec-CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC
Q psy13076        163 -KEHILKNEFH-PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE  240 (423)
Q Consensus       163 -~~~~~~~~~~-~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~  240 (423)
                       ++...   +. .....+..++|||||+.++.++.....                               .++      .
T Consensus       176 ~~~~~~---l~~~~~~~~~~~~~SpDG~~la~~~~~~~~-------------------------------~~~------~  215 (662)
T 3azo_A          176 RSAVRE---LSDDAHRFVTGPRLSPDGRQAVWLAWDHPR-------------------------------MPW------E  215 (662)
T ss_dssp             GGGSEE---SSCSCSSEECCCEECTTSSEEEEEEECTTC-------------------------------CTT------T
T ss_pred             CCceeE---EEecCCCcccCceECCCCCEEEEEECCCCC-------------------------------CCC------C
Confidence             44321   11 223456778899999988765432110                               000      0


Q ss_pred             CCeEEEEcCC-Cc---eeeeeccccccCeEEEEECCCCCEEEEEEecC--eEEEEECCCccceecccccccCCC------
Q psy13076        241 DNTIAVFEGP-PF---KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG--KVFLYDGASADLVSELGNPAHKGG------  308 (423)
Q Consensus       241 d~~i~~~~~~-~~---~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~------  308 (423)
                      ...|++|+.. ..   ........+...+..++|+|||+++++++.++  .|++||..+++......  .+...      
T Consensus       216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~--~~~~~~~p~w~  293 (662)
T 3azo_A          216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR--REEEFAGPLWT  293 (662)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC--CSSBSSCCCCS
T ss_pred             CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc--ccccccCcccc
Confidence            1235555544 22   22222233456688999999999888888888  67777766665432221  12111      


Q ss_pred             --eEEEEECCCCCeEEEEeCCCcEEEE--ecCCcceeeeeeeCceeEeeEEEEEecCcEEE--EEeCCC--cEEEEecCC
Q psy13076        309 --VYAVAWKPDGTQLLTASGDKTCKLW--DIETKSAVSEFLMGNQVEDQQVSCLWQGDYLL--TVSLSG--FISYLDVNN  380 (423)
Q Consensus       309 --i~~l~~~~~~~~l~s~s~d~~i~iw--d~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~--~~~~~~--~i~~~~~~~  380 (423)
                        +..++|+|+++++++++. ++++||  |+.+++ +..+... ......+. .++++.++  +.+.+.  .++.+|..+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~-~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~  369 (662)
T 3azo_A          294 PGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP-WTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVT  369 (662)
T ss_dssp             TTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS-CCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred             ccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCC-CCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence              467899999999999998 999999  555554 3443222 11112221 45666544  334443  455566555


Q ss_pred             C
Q psy13076        381 P  381 (423)
Q Consensus       381 ~  381 (423)
                      .
T Consensus       370 g  370 (662)
T 3azo_A          370 G  370 (662)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=5.5e-16  Score=142.95  Aligned_cols=292  Identities=12%  Similarity=0.052  Sum_probs=192.5

Q ss_pred             eCCEEEEEe------ccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec----------CCCceEEeecCC
Q psy13076         15 QGDYLLTVS------LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS----------HDGFITRWNAKT   78 (423)
Q Consensus        15 ~~~~~~~~~------~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~----------~D~~i~vW~~~~   78 (423)
                      |++++..+.      .|+.|.+||..+ .+.+.++..+..+  .++|+|++++|++++          .|++|.+||..+
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t-~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTN-GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTT-CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCC-CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            677777654      478999999876 4566677777767  899999999998876          377899999998


Q ss_pred             cceeecccCC-----CCCCceEEeeCCCCCeEEEec---CCeEEEEecCCCccccc-ccCCcceEEEEEECCCC-CEEEE
Q psy13076         79 EYIFATLPRT-----QRGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSG-FYIAS  148 (423)
Q Consensus        79 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~-~~~h~~~i~~~~~sp~~-~~l~s  148 (423)
                      .+....+...     ....+..+..+|+|+.++.++   ++.+.++++++.+.... +...  ....+.+.|++ ..+++
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~  168 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMT  168 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEE
Confidence            8776665321     112345577899999887754   46899999998877665 4322  12335677865 67788


Q ss_pred             EccCCcEEEEEcCC-CceeEEe----eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc--eeccc-----
Q psy13076        149 GDISGKVRIWDTVN-KEHILKN----EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS--VGEIS-----  216 (423)
Q Consensus       149 ~~~d~~i~vwd~~~-~~~~~~~----~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----  216 (423)
                      .+.|+.+.+|+... ++.....    .+.....+ ..+.++|++..++..+...  ...+++......  .....     
T Consensus       169 ~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~--~v~v~d~~~~~~~~~~~~~~~~~~  245 (361)
T 2oiz_A          169 ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYG--NVYSADFSGDEVKVDGPWSLLNDE  245 (361)
T ss_dssp             EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTS--EEEEEECSSSSCEEEEEEESCCHH
T ss_pred             ECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCC--eEEEEEecCCCceecccccccCcc
Confidence            88999999999864 3322111    11111111 1223345665555544322  223333322110  00000     


Q ss_pred             ---CC--CcceeEEEEecCCCeeEEEEe----------CCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE
Q psy13076        217 ---GQ--SKPINSCDFKPSRPFRIITGS----------EDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG  281 (423)
Q Consensus       217 ---~~--~~~i~~~~~~~~~~~~~~s~s----------~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s  281 (423)
                         ..  ......++++|++....++..          ..+.+.+||....+.......+.  +..++|+|||++|++++
T Consensus       246 ~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n  323 (361)
T 2oiz_A          246 DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLD  323 (361)
T ss_dssp             HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEEC
T ss_pred             ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeC
Confidence               00  011123688998877555544          13589999998888777666655  88999999999999888


Q ss_pred             ecCeEEEEECCCc--cceecccccccCCCeEEEEECCCCC
Q psy13076        282 FDGKVFLYDGASA--DLVSELGNPAHKGGVYAVAWKPDGT  319 (423)
Q Consensus       282 ~dg~i~vwd~~~~--~~~~~~~~~~~~~~i~~l~~~~~~~  319 (423)
                      . +.|.+||..++  +.+.++.  .+......++++|+|+
T Consensus       324 ~-~~v~v~D~~t~~l~~~~~i~--~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          324 G-GNVNVYDISQPEPKLLRTIE--GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             S-SCEEEEECSSSSCEEEEEET--TSCSSEEEEEECCCSC
T ss_pred             C-CeEEEEECCCCcceeeEEec--cCCCCcEEEEecCCCC
Confidence            6 99999999999  8777653  2445678999999986

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.77  E-value=3.4e-16  Score=142.62  Aligned_cols=280  Identities=13%  Similarity=0.159  Sum_probs=172.1

Q ss_pred             ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccc
Q psy13076         46 HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD  125 (423)
Q Consensus        46 h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  125 (423)
                      --+.|.+++++|+++++++...++.+++++.+....+....   .+        |       ...+.+.+++.+++++..
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~---~~--------~-------~~~~~i~~~d~~~g~~~~   83 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRG---LG--------P-------IEEDTILVIDPNNAEILQ   83 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGG---GC--------S-------CCSCCEEEECTTTCCEEE
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccc---cc--------c-------ccCCcEEEEECCCCeEEe
Confidence            35689999999999999999988877666554432211100   00        0       012345566666555544


Q ss_pred             ccc-CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc-eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076        126 IYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV  203 (423)
Q Consensus       126 ~~~-~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~  203 (423)
                      .+. ++......++++|+|+++++...++.|++||..... .+.........+                           
T Consensus        84 ~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g---------------------------  136 (329)
T 3fvz_A           84 SSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG---------------------------  136 (329)
T ss_dssp             EECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC---------------------------
T ss_pred             ccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC---------------------------
Confidence            433 455678899999999988888889999999975432 111110000000                           


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEe-CCCeEEEEcCCCceeeeecc----------ccccCeEEEEECC
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS-EDNTIAVFEGPPFKFKMTKQ----------EHSRFVQAVRYSP  272 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s-~d~~i~~~~~~~~~~~~~~~----------~~~~~i~~l~~s~  272 (423)
                                .-..+...+..++++|.+..++++.+ .++.|++|+.. ........          .+......++++|
T Consensus       137 ----------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~  205 (329)
T 3fvz_A          137 ----------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVP  205 (329)
T ss_dssp             ----------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEET
T ss_pred             ----------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEEC
Confidence                      00011123344444442112233333 35555555522 22221111          1223478899999


Q ss_pred             C-CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECC------CCCeEEEEeCCCcEEEEecCCcceeeeee
Q psy13076        273 S-GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP------DGTQLLTASGDKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       273 ~-g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~------~~~~l~s~s~d~~i~iwd~~~~~~i~~~~  345 (423)
                      + |.++++...++.|++|+..+++.+..+....+...+.+++|+|      +|+..++...+.+|++||..+++.+..+.
T Consensus       206 ~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~  285 (329)
T 3fvz_A          206 HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK  285 (329)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence            9 6777777788999999998888877775555667789999999      33333333344578888877765443321


Q ss_pred             eCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        346 MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       346 ~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                                                               ...+|......|+++|++.++++...++.|++|+++
T Consensus       286 -----------------------------------------~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          286 -----------------------------------------PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             -----------------------------------------CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             -----------------------------------------CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence                                                     012455668899999999888899999999999864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=3.1e-15  Score=133.31  Aligned_cols=244  Identities=12%  Similarity=0.110  Sum_probs=160.2

Q ss_pred             ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC-----CCCCceEEee-CCCCCeEEEec--CCeEEE
Q psy13076         44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT-----QRGQPIVLGG-DPKGKNFLYTN--GNSVII  115 (423)
Q Consensus        44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~--~~~~~i  115 (423)
                      .+|.....++++++++.++++...++.|++||.+. .....+...     ....+..+.. +++++.++...  ...+.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            46777899999999999999989999999999874 333333211     1123445566 56777777663  578888


Q ss_pred             EecCCCccccccc-CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEE
Q psy13076        116 RNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG  194 (423)
Q Consensus       116 ~~~~~~~~~~~~~-~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~  194 (423)
                      ++. +++....+. .+...+..++++|+|+++++...++.|.+||.. ++.............+..++++|++..     
T Consensus       105 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l-----  177 (286)
T 1q7f_A          105 YNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI-----  177 (286)
T ss_dssp             ECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE-----
T ss_pred             ECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE-----
Confidence            984 455444443 345678999999999988888888999999954 232221111111123455555555442     


Q ss_pred             cCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecc--ccccCeEEEEECC
Q psy13076        195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ--EHSRFVQAVRYSP  272 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~--~~~~~i~~l~~s~  272 (423)
                                                              +++...++.|.+|+.... ......  .+...+..++++|
T Consensus       178 ----------------------------------------~v~~~~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~  216 (286)
T 1q7f_A          178 ----------------------------------------FISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINS  216 (286)
T ss_dssp             ----------------------------------------EEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECT
T ss_pred             ----------------------------------------EEEECCCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECC
Confidence                                                    333334555666654322 111221  2235678999999


Q ss_pred             CCCEEEEEEecC-eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        273 SGSHFASAGFDG-KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       273 ~g~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      +|.++++...++ .|.+|+. +++.+..+........+.+++++|+|+++++ +.|++|++|++...
T Consensus       217 ~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          217 NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            999888887776 9999995 4555555543222335789999999987777 67999999998653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.75  E-value=3.4e-14  Score=137.80  Aligned_cols=318  Identities=18%  Similarity=0.156  Sum_probs=206.7

Q ss_pred             CCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEE
Q psy13076         57 PDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV  136 (423)
Q Consensus        57 ~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~  136 (423)
                      +.+.++++...+++|.++|.++++++..+.                                          . ...++.
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~------------------------------------------~-g~~p~~  201 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD------------------------------------------T-GYAVHI  201 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEE------------------------------------------C-SSCEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEe------------------------------------------C-CCCccc
Confidence            334456667777788888877765544331                                          1 113557


Q ss_pred             EEECCCCCEEEEEccCCcEEEEEcC--CCceeEEeeecCCCCCeeEEEEC----CCCCeEEEEEcCCceeeEEEeecCCc
Q psy13076        137 AKYSPSGFYIASGDISGKVRIWDTV--NKEHILKNEFHPIGGPIKDIAWS----PDNQRMVVVGEGRERFGHVFMSETGT  210 (423)
Q Consensus       137 ~~~sp~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~v~~v~~s----~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (423)
                      +.|+|||+++++++.|+.|.+||+.  +.+....  .. .......++|+    |||++++++...... ..+++..+.+
T Consensus       202 v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~--i~-~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~-v~ViD~~t~~  277 (567)
T 1qks_A          202 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE--IK-IGSEARSIETSKMEGWEDKYAIAGAYWPPQ-YVIMDGETLE  277 (567)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE--EE-CCSEEEEEEECCSTTCTTTEEEEEEEETTE-EEEEETTTCC
T ss_pred             eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE--Ee-cCCCCceeEEccccCCCCCEEEEEEccCCe-EEEEECCCCc
Confidence            8999999999999999999999995  5444332  22 23345789999    699999888755443 3455666655


Q ss_pred             ceecccCC-----------CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce-eeeeccccccCeEEEEECCCCCEEE
Q psy13076        211 SVGEISGQ-----------SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-FKMTKQEHSRFVQAVRYSPSGSHFA  278 (423)
Q Consensus       211 ~~~~~~~~-----------~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~  278 (423)
                      .+..+...           ...+..+..++.++..++.....|.|.+.+....+ +.............+.|+|+|++++
T Consensus       278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~  357 (567)
T 1qks_A          278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI  357 (567)
T ss_dssp             EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred             EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEE
Confidence            55544321           11455677777777656666677899998865432 1111122334566789999999887


Q ss_pred             EEE-ecCeEEEEECCCccceecccc---cccCCCeEEEEECCCC-CeEEEEe-CCCcEEEEecCC-------cceeeeee
Q psy13076        279 SAG-FDGKVFLYDGASADLVSELGN---PAHKGGVYAVAWKPDG-TQLLTAS-GDKTCKLWDIET-------KSAVSEFL  345 (423)
Q Consensus       279 s~s-~dg~i~vwd~~~~~~~~~~~~---~~~~~~i~~l~~~~~~-~~l~s~s-~d~~i~iwd~~~-------~~~i~~~~  345 (423)
                      ++. .++.|.++|.+++++...+..   ..|.+.-..+ ++|++ ...+++. .+++|.++|..+       .+.+.+..
T Consensus       358 va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~  436 (567)
T 1qks_A          358 TAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP  436 (567)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             EEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe
Confidence            666 578999999999887655432   1243322223 58874 4445543 568999999987       55565554


Q ss_pred             eCceeEeeEEEEEecCcEEEEEeC-------CCcEEEEecCCC-----CCceEEec-c-------CCCceeEEEecCCCC
Q psy13076        346 MGNQVEDQQVSCLWQGDYLLTVSL-------SGFISYLDVNNP-----STPIRVIK-G-------HNKPITALALSPDRG  405 (423)
Q Consensus       346 ~~~~~~~~~~~~~~~g~~l~~~~~-------~~~i~~~~~~~~-----~~~~~~~~-~-------h~~~v~~i~~sp~~~  405 (423)
                      ... .....+...+++.++.+...       +..|.++|+.+.     ...+..+. +       -.+.+..+.|+|+|+
T Consensus       437 ~~g-~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  515 (567)
T 1qks_A          437 ALG-GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGT  515 (567)
T ss_dssp             CSC-SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSS
T ss_pred             cCC-CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCC
Confidence            321 11223455678888876553       458999999876     33333332 1       135789999999999


Q ss_pred             eEEEe-c----CCCcEEEeeCCC
Q psy13076        406 TVFTG-S----HDGFITRWNAKT  423 (423)
Q Consensus       406 ~l~s~-s----~D~~i~~W~~~~  423 (423)
                      .+..+ .    .++.|.++|.+|
T Consensus       516 ~~~~s~~~~~~~~~~i~v~D~~t  538 (567)
T 1qks_A          516 EVWFSVWNGKDQESALVVVDDKT  538 (567)
T ss_dssp             EEEEEEECCTTSCCEEEEEETTT
T ss_pred             EEEEEeecCCCCCCcEEEEECCC
Confidence            86543 3    378999999765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.74  E-value=3.3e-16  Score=156.61  Aligned_cols=288  Identities=13%  Similarity=0.060  Sum_probs=184.7

Q ss_pred             ccccccCCcceEEEEEECCCCCEEEEE--ccCCcEEEEEcCCCceeEEeeecCCCCCee---------EEEEC--CCCCe
Q psy13076        123 ISDIYTEHSCAVNVAKYSPSGFYIASG--DISGKVRIWDTVNKEHILKNEFHPIGGPIK---------DIAWS--PDNQR  189 (423)
Q Consensus       123 ~~~~~~~h~~~i~~~~~sp~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~---------~v~~s--~~~~~  189 (423)
                      ..+.+.+|...+..++|+++..++++.  +.++..+||.........  .+......+.         ...|+  |||+.
T Consensus        15 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~   92 (662)
T 3azo_A           15 DAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE--SALPAPWNVRNRVFEYSGFPWAGVPRPAGGP   92 (662)
T ss_dssp             CHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE--ESSCTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred             CHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc--eeCCCCccccccccccCCccceeeeecCCCe
Confidence            345677899999999999988888887  668899999964332222  1222223334         45565  99998


Q ss_pred             -EEEEEcCCceeeEEEeecCC----cceecccC-----CCcceeEEEEecCCCeeEEEEeCC----------CeEEEEcC
Q psy13076        190 -MVVVGEGRERFGHVFMSETG----TSVGEISG-----QSKPINSCDFKPSRPFRIITGSED----------NTIAVFEG  249 (423)
Q Consensus       190 -~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~i~~~~~~~~~~~~~~s~s~d----------~~i~~~~~  249 (423)
                       ++......   ..+|..+..    .....+..     +...+..++|+|++.. ++.++.+          ..|++|+.
T Consensus        93 ~la~~~~~~---~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~~~~~~~i~~~~~  168 (662)
T 3azo_A           93 LLVFTHFGD---QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGE-VWCMAEEFTGEGPSDVRRFLAAVPL  168 (662)
T ss_dssp             EEEEEBTTT---CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTE-EEEEEEEECSSSTTCEEEEEEEEET
T ss_pred             EEEEEECCC---CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCE-EEEEEecccCCCCCCceeEEEEEEC
Confidence             76654432   235554432    44444544     5567889999999986 5555554          57899987


Q ss_pred             CC------ceeeeecc-ccccCeEEEEECCCCCEEEEEEecC--------eEEEEECC-Ccc--ceecccccccCCCeEE
Q psy13076        250 PP------FKFKMTKQ-EHSRFVQAVRYSPSGSHFASAGFDG--------KVFLYDGA-SAD--LVSELGNPAHKGGVYA  311 (423)
Q Consensus       250 ~~------~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~s~dg--------~i~vwd~~-~~~--~~~~~~~~~~~~~i~~  311 (423)
                      ..      .... .+. .+...+..++|||||++|+.++.++        .|++||.. +++  ....+. ..|...+..
T Consensus       169 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-~~~~~~~~~  246 (662)
T 3azo_A          169 DGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-GGPEEAIAQ  246 (662)
T ss_dssp             TSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-EETTBCEEE
T ss_pred             CCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-CCCCceEcc
Confidence            65      4333 233 4445677899999999999888663        79999998 462  233332 234677899


Q ss_pred             EEECCCCCeEEEEeCCC--cEEEEecCCcceeeeeeeCceeE-------eeEEEEEecCcEEEEEeCCCcEEEEecCCCC
Q psy13076        312 VAWKPDGTQLLTASGDK--TCKLWDIETKSAVSEFLMGNQVE-------DQQVSCLWQGDYLLTVSLSGFISYLDVNNPS  382 (423)
Q Consensus       312 l~~~~~~~~l~s~s~d~--~i~iwd~~~~~~i~~~~~~~~~~-------~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~  382 (423)
                      ++|+|||++++++..++  .|.+||+.+++............       ...+.+.+++..++++.. +...+|.+....
T Consensus       247 ~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~  325 (662)
T 3azo_A          247 AEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES  325 (662)
T ss_dssp             EEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred             eEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence            99999999888888888  55566665655432211111110       123444557888888888 888888544332


Q ss_pred             CceEEeccCCCceeEE-EecCCCCeEEEecCCCcEEEe
Q psy13076        383 TPIRVIKGHNKPITAL-ALSPDRGTVFTGSHDGFITRW  419 (423)
Q Consensus       383 ~~~~~~~~h~~~v~~i-~~sp~~~~l~s~s~D~~i~~W  419 (423)
                      ..++.+..|...+..+ ++.++.-.+++++.+....+|
T Consensus       326 ~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          326 GELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             TEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            3367778888888877 554333334455666555554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.74  E-value=1.6e-16  Score=148.23  Aligned_cols=302  Identities=14%  Similarity=0.072  Sum_probs=176.2

Q ss_pred             eeeEEEEeCCEEEEEecc---ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076          8 QQVSCLWQGDYLLTVSLS---GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~d---g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      ..+++++||++|+.++..   ..|++||+.+ .+......++......+.|+|+++.|+.++.++.|++||+.+++....
T Consensus        39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLET-QQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TSCCBCTTSCEEEEEECTTSSCEEEEEETTT-TEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             ecCcCCCCCCEEEEEEecCCCceEEEEECCC-CcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            456778899999887654   4788888765 333333333333344588999999999999999999999988754332


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCe-EEEEecCCCcccccccCCcceEEEEEECCCCCEEEEE-----ccCCcEEEE
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNS-VIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-----DISGKVRIW  158 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-----~~d~~i~vw  158 (423)
                      ..... +      +.++|+.+++..... ..++.                 ....|+|+++.++..     ..+..|.+|
T Consensus       118 ~~~~~-~------~~~~g~~l~~~~~~~~~~~~~-----------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A          118 YTVDE-E------WKGYGTWVANSDCTKLVGIEI-----------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             EECCT-T------EEEEEEEEECTTSSEEEEEEE-----------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred             Eeccc-c------cCCCCCEEEeccCCccccccc-----------------cccccCCCCcceeeeeeccCCCcceEEEE
Confidence            21110 0      223344443332211 11111                 123578999887765     356789999


Q ss_pred             EcCCCceeEEeeecCCCCCeeEEEECC-CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEE
Q psy13076        159 DTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIIT  237 (423)
Q Consensus       159 d~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s  237 (423)
                      |+.+++.....   .....+..+.|+| +++.++.++.+...                                      
T Consensus       174 d~~~g~~~~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~--------------------------------------  212 (396)
T 3c5m_A          174 DIETGELEVIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHD--------------------------------------  212 (396)
T ss_dssp             ETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCSS--------------------------------------
T ss_pred             ECCCCcEEeec---cCCcccccceECCCCCCEEEEEecCCCC--------------------------------------
Confidence            98876543222   1234577888999 67766654321100                                      


Q ss_pred             EeCCCeEEEEcCCCceeeeecccc-ccCeEEEEECCCCCEEEEEEec-----CeEEEEECCCccceecccccccCCCeEE
Q psy13076        238 GSEDNTIAVFEGPPFKFKMTKQEH-SRFVQAVRYSPSGSHFASAGFD-----GKVFLYDGASADLVSELGNPAHKGGVYA  311 (423)
Q Consensus       238 ~s~d~~i~~~~~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~i~~  311 (423)
                       .....|.+++............. ...+..++|+|+|++|+.++.+     +.|++||..+++........    ... 
T Consensus       213 -~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~~~-  286 (396)
T 3c5m_A          213 -LVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP----PCS-  286 (396)
T ss_dssp             -SCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC----SEE-
T ss_pred             -CCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC----CCC-
Confidence             00122334443222211111111 2246788999999988887765     45999999877643221111    233 


Q ss_pred             EEECC-CCCeEEEEe----------------CCCcEEEEecCCcceeeeeeeCce-e---------EeeEEEEEecCcEE
Q psy13076        312 VAWKP-DGTQLLTAS----------------GDKTCKLWDIETKSAVSEFLMGNQ-V---------EDQQVSCLWQGDYL  364 (423)
Q Consensus       312 l~~~~-~~~~l~s~s----------------~d~~i~iwd~~~~~~i~~~~~~~~-~---------~~~~~~~~~~g~~l  364 (423)
                      +.|+| +|++++.++                .+..|.+||+.+++.. .+..... .         ........++|+.|
T Consensus       287 ~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  365 (396)
T 3c5m_A          287 HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGV  365 (396)
T ss_dssp             EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred             CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeE
Confidence            88999 999888765                3478999999877642 2221111 0         01223456789988


Q ss_pred             EEEeC-CCc--EEEEecCCCC
Q psy13076        365 LTVSL-SGF--ISYLDVNNPS  382 (423)
Q Consensus       365 ~~~~~-~~~--i~~~~~~~~~  382 (423)
                      +..+. ++.  ++.+++....
T Consensus       366 ~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          366 LFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             EEEECTTSSCEEEEEECCTTC
T ss_pred             EEEecCCCCceEEEEEEcccc
Confidence            87764 443  5555555443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=5.1e-15  Score=131.84  Aligned_cols=248  Identities=12%  Similarity=0.070  Sum_probs=159.8

Q ss_pred             cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076        128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       128 ~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      .+|...+..++++|+++++++...++.|++||.. ++..........                                 
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~---------------------------------   71 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK---------------------------------   71 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS---------------------------------
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC---------------------------------
Confidence            3566778999999999998988889999999975 332211110000                                 


Q ss_pred             CCcceecccCCCcceeEEEEecCCCeeEEEEe-CCCeEEEEcCCCceeeeec-cccccCeEEEEECCCCCEEEEEEecCe
Q psy13076        208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGS-EDNTIAVFEGPPFKFKMTK-QEHSRFVQAVRYSPSGSHFASAGFDGK  285 (423)
Q Consensus       208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s-~d~~i~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~s~s~dg~  285 (423)
                             ...+...+..+++.+....++++.. .++.|.+|+. ..+..... ..+...+..++++|+|+++++...++.
T Consensus        72 -------~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~  143 (286)
T 1q7f_A           72 -------RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMR  143 (286)
T ss_dssp             -------STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTE
T ss_pred             -------CcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCE
Confidence                   0011122334444322222233332 2567777773 22222222 223346789999999998888778899


Q ss_pred             EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCc-eeEeeEEEEEecCcEE
Q psy13076        286 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGN-QVEDQQVSCLWQGDYL  364 (423)
Q Consensus       286 i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~l  364 (423)
                      |.+||. .++....+....+...+.+++++|+|+++++.+.++.|++||.. ++.+..+.... ......+.+.++|..+
T Consensus       144 i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~  221 (286)
T 1q7f_A          144 VIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEIL  221 (286)
T ss_dssp             EEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEE
T ss_pred             EEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEE
Confidence            999995 45555444322344568999999999988888889999999974 44455443221 1223445666788877


Q ss_pred             EEEeCCC-cEEEEecCCCCCceEEeccCCC--ceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        365 LTVSLSG-FISYLDVNNPSTPIRVIKGHNK--PITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       365 ~~~~~~~-~i~~~~~~~~~~~~~~~~~h~~--~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      ++...++ .|.+|+...  ..+..+..+..  .+.+++++|+++++++ +.|++|++|+..
T Consensus       222 v~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          222 IADNHNNFNLTIFTQDG--QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             EEECSSSCEEEEECTTS--CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             EEeCCCCEEEEEECCCC--CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence            7777775 999998543  33444444433  4789999999988877 569999999864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=7.3e-15  Score=134.62  Aligned_cols=253  Identities=14%  Similarity=0.114  Sum_probs=160.2

Q ss_pred             eCCEEEEEe---------ccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCC---Cc--eEEeecCCcc
Q psy13076         15 QGDYLLTVS---------LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHD---GF--ITRWNAKTEY   80 (423)
Q Consensus        15 ~~~~~~~~~---------~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D---~~--i~vW~~~~~~   80 (423)
                      ||++++...         .++.|++||+.++ ++ ..+    ..+..++|+|+|++|+..+.+   +.  |.+|++++++
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~-~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~   96 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNN-AR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS   96 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTC-CE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCC-ce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc
Confidence            899998763         3678999998753 32 334    568899999999998887654   23  6666776654


Q ss_pred             eeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc---------
Q psy13076         81 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI---------  151 (423)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~---------  151 (423)
                      .....                                          ..+ . +..+.|+|||+.|+.++.         
T Consensus        97 ~~~l~------------------------------------------~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~  132 (347)
T 2gop_A           97 SKKIL------------------------------------------EAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFI  132 (347)
T ss_dssp             EEEEE------------------------------------------EES-E-EEEEEECTTSSEEEEEEECCCC-----
T ss_pred             eEEEE------------------------------------------cCC-C-ccceeECCCCCEEEEEEccCCCcCCcE
Confidence            32211                                          111 1 556667777766666543         


Q ss_pred             ------------------CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc----e-eeEEEeecC
Q psy13076        152 ------------------SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE----R-FGHVFMSET  208 (423)
Q Consensus       152 ------------------d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~----~-~~~~~~~~~  208 (423)
                                        ...|.+||+.+++.......   . .+..++|+|+| .+++......    . ...++..+ 
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-  206 (347)
T 2gop_A          133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-  206 (347)
T ss_dssp             ----CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-
T ss_pred             EEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-
Confidence                              25789999987664222222   2 57889999999 5544433211    1 33455554 


Q ss_pred             CcceecccCCCcceeEEEEecCCCeeEEEEeCC-------CeEEEEcCCCceeeeeccccccCeEE-EEECCCCCEEEEE
Q psy13076        209 GTSVGEISGQSKPINSCDFKPSRPFRIITGSED-------NTIAVFEGPPFKFKMTKQEHSRFVQA-VRYSPSGSHFASA  280 (423)
Q Consensus       209 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d-------~~i~~~~~~~~~~~~~~~~~~~~i~~-l~~s~~g~~l~s~  280 (423)
                      ......+..+ ..+..+  +|++..+++.+..+       ..|.+|+  ..+.......+...+.. +.|+ +| +++++
T Consensus       207 ~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~  279 (347)
T 2gop_A          207 DGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTL  279 (347)
T ss_dssp             TTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEE
T ss_pred             CCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEE
Confidence            3333333333 334433  88888744444332       4688888  33333333445566775 8999 88 88999


Q ss_pred             EecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcE-EEEecC
Q psy13076        281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC-KLWDIE  336 (423)
Q Consensus       281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i-~iwd~~  336 (423)
                      +.++.+++| ..+++. ..+.  .+.+.+.+++|+|  ..+++++.++.. +||.+.
T Consensus       280 ~~~~~~~l~-~~~g~~-~~~~--~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          280 FEEGSVNLY-IWDGEI-KPIA--KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EETTEEEEE-EESSSE-EEEE--CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             ecCCcEEEE-EcCCce-EEEe--cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            999999999 775543 2332  2466789999999  677777777665 788776

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=1.1e-13  Score=134.28  Aligned_cols=326  Identities=14%  Similarity=0.111  Sum_probs=218.4

Q ss_pred             EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecC--CcceeecccCCCCC
Q psy13076         14 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK--TEYIFATLPRTQRG   91 (423)
Q Consensus        14 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~--~~~~~~~~~~~~~~   91 (423)
                      +.+.++++...++.|.++|..+ .+.+.++... ..+..+.|+|++++|++++.|+.|.+||+.  +.++...+...  .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t-~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~  240 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGST-YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--S  240 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTT-CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--S
T ss_pred             CCceEEEEeCCCCeEEEEECCC-CeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--C
Confidence            4567788888899999999976 4555566532 356689999999999999999999999995  77666655432  2


Q ss_pred             CceEEeeC----CCCCeEEEec--CCeEEEEecCCCcccccccC----------Ccc-eEEEEEECCCCC-EEEEEccCC
Q psy13076         92 QPIVLGGD----PKGKNFLYTN--GNSVIIRNIENPAISDIYTE----------HSC-AVNVAKYSPSGF-YIASGDISG  153 (423)
Q Consensus        92 ~~~~~~~~----~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~----------h~~-~i~~~~~sp~~~-~l~s~~~d~  153 (423)
                      .+.-+.++    |+|+.++..+  .+.+.++|..+.+..+.+.-          |.. .+..+.+++++. ++++...+|
T Consensus       241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g  320 (567)
T 1qks_A          241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  320 (567)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence            34556677    6998777654  57888999888776655431          222 677888888755 455566779


Q ss_pred             cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccC-CC--cceeEEE-Eec
Q psy13076        154 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG-QS--KPINSCD-FKP  229 (423)
Q Consensus       154 ~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~i~~~~-~~~  229 (423)
                      .|.++|....+....... ........+.|+|++++++++...... ..+++..+++.+..+.. ..  .+-.... ++|
T Consensus       321 ~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p  398 (567)
T 1qks_A          321 KILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP  398 (567)
T ss_dssp             EEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred             eEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence            999999876543322222 223456788999999999888754433 45667776665544432 11  1111222 567


Q ss_pred             CCCeeEEEEe-CCCeEEEEcCCC-------ceeeeeccccccCeEEEEECCCCCEEEEEEe-------cCeEEEEECCCc
Q psy13076        230 SRPFRIITGS-EDNTIAVFEGPP-------FKFKMTKQEHSRFVQAVRYSPSGSHFASAGF-------DGKVFLYDGASA  294 (423)
Q Consensus       230 ~~~~~~~s~s-~d~~i~~~~~~~-------~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~-------dg~i~vwd~~~~  294 (423)
                      ++....+++. .++.|.+++..+       ++...+.......-..+..+|+++++.+...       .+.|.++|..+.
T Consensus       399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            6554455554 468999998765       5554444433222234678999999887663       469999998876


Q ss_pred             -----cce-ecccc------cccCCCeEEEEECCCCCeEEEEe-----CCCcEEEEecCCcceeeeee
Q psy13076        295 -----DLV-SELGN------PAHKGGVYAVAWKPDGTQLLTAS-----GDKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       295 -----~~~-~~~~~------~~~~~~i~~l~~~~~~~~l~s~s-----~d~~i~iwd~~~~~~i~~~~  345 (423)
                           ... ..+..      ......+..+.|+|+|+++..+.     .++.|.++|.++.+++....
T Consensus       479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence                 211 22210      01134678999999998776653     37899999999998766553

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.70  E-value=6.8e-15  Score=133.94  Aligned_cols=243  Identities=12%  Similarity=0.124  Sum_probs=166.9

Q ss_pred             eeEEEEeCCEEEEEecc------------------------ceEEEEeccCCCCceeecc-cccCceeEEEEeCCCCeEE
Q psy13076          9 QVSCLWQGDYLLTVSLS------------------------GFISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTVF   63 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~d------------------------g~i~~~d~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~l~   63 (423)
                      -||+++||+++++...+                        +.|.+||..++ +....+. ++......++++|++++++
T Consensus        28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~p~gia~d~~g~l~v  106 (329)
T 3fvz_A           28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-EILQSSGKNLFYLPHGLSIDTDGNYWV  106 (329)
T ss_dssp             EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC-CEEEEECTTTCSSEEEEEECTTSCEEE
T ss_pred             EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC-eEEeccCCCccCCceEEEECCCCCEEE
Confidence            47788899999988877                        47999998653 3343333 5666889999999999999


Q ss_pred             EecCCCceEEeecCCcc-eeeccc--------CCCCCCceEEeeCC-CCCeEEEec--CCeEEEEecCCCccccccc---
Q psy13076         64 TGSHDGFITRWNAKTEY-IFATLP--------RTQRGQPIVLGGDP-KGKNFLYTN--GNSVIIRNIENPAISDIYT---  128 (423)
Q Consensus        64 sg~~D~~i~vW~~~~~~-~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~~~---  128 (423)
                      +...++.|++||.+... .+..+.        ......+.-+..+| +++.++...  ...+.+++. ++.....+.   
T Consensus       107 ~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g  185 (329)
T 3fvz_A          107 TDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEES  185 (329)
T ss_dssp             EETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEEC
T ss_pred             EECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCC
Confidence            99999999999987542 222221        11223466688888 788887763  578888884 455554443   


Q ss_pred             -------CCcceEEEEEECCC-CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        129 -------EHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       129 -------~h~~~i~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                             ++......++++|+ +.++++...++.|++||..+++.+...........+..++|+| + .++.. .+.   
T Consensus       186 ~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g-~~~~~-~g~---  259 (329)
T 3fvz_A          186 SGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G-FLFAV-NGK---  259 (329)
T ss_dssp             CSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T-EEEEE-ECC---
T ss_pred             CCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C-EEEEe-CCC---
Confidence                   23345889999998 7777888888999999988666554433334455677888888 3 22221 111   


Q ss_pred             eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec---cccccCeEEEEECCCCCEE
Q psy13076        201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK---QEHSRFVQAVRYSPSGSHF  277 (423)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~---~~~~~~i~~l~~s~~g~~l  277 (423)
                                                       ..++...+..+++|+....+....+   ..+...+..++++|+|.++
T Consensus       260 ---------------------------------~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ly  306 (329)
T 3fvz_A          260 ---------------------------------PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVY  306 (329)
T ss_dssp             ---------------------------------CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred             ---------------------------------EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEE
Confidence                                             0122234456777775555444443   3455668899999999888


Q ss_pred             EEEEecCeEEEEECC
Q psy13076        278 ASAGFDGKVFLYDGA  292 (423)
Q Consensus       278 ~s~s~dg~i~vwd~~  292 (423)
                      ++...++.|++|+..
T Consensus       307 vad~~~~~I~~~~~~  321 (329)
T 3fvz_A          307 IGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEESSSCCEEEEEEE
T ss_pred             EEECCCCEEEEEeCC
Confidence            888889999999864

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.69  E-value=9.2e-15  Score=146.83  Aligned_cols=283  Identities=8%  Similarity=-0.040  Sum_probs=177.0

Q ss_pred             EEEEeCCEEEEEeccc-----eEEEEeccCCCCceeec------ccccCceeEEEEeCCCCeEE-----EecCCCceEEe
Q psy13076         11 SCLWQGDYLLTVSLSG-----FISYLDVNNPSTPIRVI------KGHNKPITALALSPDRGTVF-----TGSHDGFITRW   74 (423)
Q Consensus        11 ~~~~~~~~~~~~~~dg-----~i~~~d~~~~~~~~~~~------~gh~~~V~~l~~~~~~~~l~-----sg~~D~~i~vW   74 (423)
                      ...+||++++-...++     .|++.+... ......+      ++|...+..++|||||++||     +|+.+.+|++|
T Consensus        74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~  152 (695)
T 2bkl_A           74 TPSRRNGRFFYVRTHKDKEKAILYWRQGES-GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI  152 (695)
T ss_dssp             CCEEETTEEEEEEECTTCSSCEEEEEESTT-SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred             CCEEECCEEEEEEEcCCCeEEEEEEEcCCC-CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence            3447999999888765     344555433 2222222      35666899999999999998     67777899999


Q ss_pred             ecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCc
Q psy13076         75 NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK  154 (423)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~  154 (423)
                      |+++++.+...                                        .+....  ...+.|+|||+.|+.++.|..
T Consensus       153 dl~tg~~~~~~----------------------------------------~~~~~~--~~~~~wspDg~~l~~~~~d~~  190 (695)
T 2bkl_A          153 DVDSGEWSKVD----------------------------------------VIEGGK--YATPKWTPDSKGFYYEWLPTD  190 (695)
T ss_dssp             ETTTCCBCSSC----------------------------------------CBSCCT--TCCCEECTTSSEEEEEECCCC
T ss_pred             ECCCCCCcCCc----------------------------------------ccCccc--ccceEEecCCCEEEEEEecCC
Confidence            99987542000                                        000010  135679999999998888776


Q ss_pred             -------------EEEEEcCCCce--eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC-CcceecccCC
Q psy13076        155 -------------VRIWDTVNKEH--ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-GTSVGEISGQ  218 (423)
Q Consensus       155 -------------i~vwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  218 (423)
                                   |++|++.+...  .+..........+..+.|+|||+++++..........++..+. +.....+..+
T Consensus       191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~  270 (695)
T 2bkl_A          191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG  270 (695)
T ss_dssp             TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred             CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence                         99999987652  2222222223467899999999999887654411223443332 2233444444


Q ss_pred             CcceeEEEEecCCCeeEEEEe---CCCeEEEEcCCCcee---eeecccc-ccCeEEEEECCCCCEEEEEEecCeEEEEEC
Q psy13076        219 SKPINSCDFKPSRPFRIITGS---EDNTIAVFEGPPFKF---KMTKQEH-SRFVQAVRYSPSGSHFASAGFDGKVFLYDG  291 (423)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~s~s---~d~~i~~~~~~~~~~---~~~~~~~-~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~  291 (423)
                      ........+ +++. .++...   .++.|.+|+......   ......+ ...+..++++ ++.++++...|+..++|..
T Consensus       271 ~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          271 VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            444445555 5555 455554   357899998654321   1112222 3457778887 6778888999998887755


Q ss_pred             C-CccceecccccccCCCeEEEEECCCCCeEEEE----eCCCcEEEEecCCcce
Q psy13076        292 A-SADLVSELGNPAHKGGVYAVAWKPDGTQLLTA----SGDKTCKLWDIETKSA  340 (423)
Q Consensus       292 ~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~----s~d~~i~iwd~~~~~~  340 (423)
                      . +++....+.. ...+.+..++++|+++.|+..    ...++|.+||+.+++.
T Consensus       348 ~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          348 TLKGKPVRTVQL-PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ETTCCEEEECCC-SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             eCCCCeeEEecC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4 3444444432 125567788899999877632    2346899999988763

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.68  E-value=3e-14  Score=129.76  Aligned_cols=267  Identities=12%  Similarity=0.097  Sum_probs=173.8

Q ss_pred             EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076         14 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP   93 (423)
Q Consensus        14 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~   93 (423)
                      +++..++..+.++.++.|.    .++...+.++...+.+++|++++++++++..++.|.+||.++++....         
T Consensus        15 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~---------   81 (333)
T 2dg1_A           15 GKSNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP---------   81 (333)
T ss_dssp             GGGGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE---------
T ss_pred             CCccceeEEeecccCcccc----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE---------
Confidence            3566666667788888883    345666777777789999999999888888899999998876543211         


Q ss_pred             eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC----CcEEEEEcCCCceeEEe
Q psy13076         94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNKEHILKN  169 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d----~~i~vwd~~~~~~~~~~  169 (423)
                                                       ...+...+.+++++|+|+++++...+    +.|.+||..+.......
T Consensus        82 ---------------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~  128 (333)
T 2dg1_A           82 ---------------------------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII  128 (333)
T ss_dssp             ---------------------------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred             ---------------------------------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE
Confidence                                             01133468889999999988877666    68999998765533111


Q ss_pred             eecCCCCCeeEEEECCCCCeEEEEEcC--CceeeEEEeecCC-cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076        170 EFHPIGGPIKDIAWSPDNQRMVVVGEG--RERFGHVFMSETG-TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV  246 (423)
Q Consensus       170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~  246 (423)
                      ........+.+++++|+|+.+++....  ......++..+.. .....+......+..++++|++..+.++.+.++.|.+
T Consensus       129 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~  208 (333)
T 2dg1_A          129 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHR  208 (333)
T ss_dssp             CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence            111233568899999999866654321  0111234444322 2222222223346789999998865666677889999


Q ss_pred             EcCCC--ceee-------eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc----ccCCCeEEEE
Q psy13076        247 FEGPP--FKFK-------MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP----AHKGGVYAVA  313 (423)
Q Consensus       247 ~~~~~--~~~~-------~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~~~~~i~~l~  313 (423)
                      |+...  ....       .....+ ..+..++++++|.++++...++.|.+||. +++.+..+...    +|...+.+++
T Consensus       209 ~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~  286 (333)
T 2dg1_A          209 IALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQ  286 (333)
T ss_dssp             EEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEE
T ss_pred             EEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEE
Confidence            98632  1111       011111 35678999999998887777899999997 45555444321    1222578999


Q ss_pred             ECCCCCeEEEEeCCC
Q psy13076        314 WKPDGTQLLTASGDK  328 (423)
Q Consensus       314 ~~~~~~~l~s~s~d~  328 (423)
                      |+|+++.|..++.++
T Consensus       287 ~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          287 FIPGTNQLIICSNDI  301 (333)
T ss_dssp             ECTTSCEEEEEEECG
T ss_pred             ECCCCCEEEEEeCcc
Confidence            999987776555543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=6.3e-14  Score=141.10  Aligned_cols=281  Identities=10%  Similarity=-0.022  Sum_probs=177.2

Q ss_pred             EEEeCCEEEEEeccc-----eEEEEeccCCCCceeec------ccccCceeEEEEeCCCCeEEEecCCC-----ceEEee
Q psy13076         12 CLWQGDYLLTVSLSG-----FISYLDVNNPSTPIRVI------KGHNKPITALALSPDRGTVFTGSHDG-----FITRWN   75 (423)
Q Consensus        12 ~~~~~~~~~~~~~dg-----~i~~~d~~~~~~~~~~~------~gh~~~V~~l~~~~~~~~l~sg~~D~-----~i~vW~   75 (423)
                      ..+||++++-...++     .|.+.+... ......+      ++|...+..++|||||++|+.++.++     +|++||
T Consensus        79 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d  157 (710)
T 2xdw_A           79 HFKKGKRYFYFYNTGLQNQRVLYVQDSLE-GEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMK  157 (710)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEESSTT-SCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEE
T ss_pred             CEEECCEEEEEEEcCCceEEEEEEEcCCC-CCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            348999998776543     445555433 2222121      34555788999999999988765543     899999


Q ss_pred             cCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCc-
Q psy13076         76 AKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK-  154 (423)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~-  154 (423)
                      +++++......                                         . + ..+..+.|+|||+.|+.++.++. 
T Consensus       158 ~~tg~~~~~~~-----------------------------------------~-~-~~~~~~~wspDg~~l~~~~~~~~~  194 (710)
T 2xdw_A          158 VDGAKELPDVL-----------------------------------------E-R-VKFSCMAWTHDGKGMFYNAYPQQD  194 (710)
T ss_dssp             TTTTEEEEEEE-----------------------------------------E-E-ECSCCEEECTTSSEEEEEECCCCS
T ss_pred             CCCCCCCcccc-----------------------------------------c-C-cccceEEEEeCCCEEEEEEECCcc
Confidence            98876432110                                         0 0 01345778898888888777665 


Q ss_pred             ---------------EEEEEcCCCcee--EEeeecCCCCCeeEEEECCCCCeEEEEEcCC---ceeeEEEeecC------
Q psy13076        155 ---------------VRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR---ERFGHVFMSET------  208 (423)
Q Consensus       155 ---------------i~vwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~------  208 (423)
                                     |.+|++.+....  ...........+..+.|+|||++++......   .....+++...      
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  274 (710)
T 2xdw_A          195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (710)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence                           999999775421  2112221234467899999999998876422   22334444443      


Q ss_pred             Cc-ceecccCCCcceeEEEEecCCCeeEEEEeCC---CeEEEEcCCCcee--eeeccccc--cCeEEEEECCCCCEEEEE
Q psy13076        209 GT-SVGEISGQSKPINSCDFKPSRPFRIITGSED---NTIAVFEGPPFKF--KMTKQEHS--RFVQAVRYSPSGSHFASA  280 (423)
Q Consensus       209 ~~-~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d---~~i~~~~~~~~~~--~~~~~~~~--~~i~~l~~s~~g~~l~s~  280 (423)
                      +. ....+..+...+.. .++|++..+++.+..+   ..|.+|+......  ...+..+.  ..+..++|++++.++++.
T Consensus       275 ~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~  353 (710)
T 2xdw_A          275 GILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY  353 (710)
T ss_dssp             SSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred             CccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence            32 34444444444433 4778887655555443   3688888654321  11222232  357788998888888888


Q ss_pred             EecCe--EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEE-e---CCCcEEEEecCCcc
Q psy13076        281 GFDGK--VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA-S---GDKTCKLWDIETKS  339 (423)
Q Consensus       281 s~dg~--i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~-s---~d~~i~iwd~~~~~  339 (423)
                      ..|+.  |.+|+..+++....+..  +.+.+..++++|+++.++.. +   ..+++.+||+.+++
T Consensus       354 ~~~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          354 LHDVKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EETTEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EECCEEEEEEEECCCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            88884  66778767776666643  46778889999998766533 2   24689999998876

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=3.3e-13  Score=135.89  Aligned_cols=259  Identities=11%  Similarity=0.102  Sum_probs=160.7

Q ss_pred             CCcceEEEEEECCCCCEEEEEccCC-----cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076        129 EHSCAVNVAKYSPSGFYIASGDISG-----KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV  203 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~  203 (423)
                      +|...+...+|||||++||.+..++     +|++||+.+++..... ...  ..+..++|+|||+.++........    
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~--~~~~~~~wspDg~~l~~~~~~~~~----  194 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LER--VKFSCMAWTHDGKGMFYNAYPQQD----  194 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEE--ECSCCEEECTTSSEEEEEECCCCS----
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccC--cccceEEEEeCCCEEEEEEECCcc----
Confidence            5666789999999999999766543     8999999887754321 111  225679999999998876543210    


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce----eeeeccccccCeEEEEECCCCCEEEE
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHFAS  279 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l~s  279 (423)
                           ...    .+..          .      .......|++|+.....    +......+...+..+.|+|||++|+.
T Consensus       195 -----~~~----~~~~----------~------~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~  249 (710)
T 2xdw_A          195 -----GKS----DGTE----------T------STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (710)
T ss_dssp             -----SCC----SSSC----------C------CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             -----ccc----cccc----------c------ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence                 000    0000          0      00123446666654322    22222334556788999999999988


Q ss_pred             EEe-----cCeEEEEECCC------cc-ceecccccccCCCeEEEEECCCCCeEEEEeCCC----cEEEEecCCcc--ee
Q psy13076        280 AGF-----DGKVFLYDGAS------AD-LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDK----TCKLWDIETKS--AV  341 (423)
Q Consensus       280 ~s~-----dg~i~vwd~~~------~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~----~i~iwd~~~~~--~i  341 (423)
                      ++.     +..|++||..+      +. ....+.  .+...+.. .|+|+|+.|+..+.++    .|.+||+.++.  ..
T Consensus       250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~--~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~  326 (710)
T 2xdw_A          250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLI--DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW  326 (710)
T ss_dssp             EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE--CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred             EEEccCCCccEEEEEECcccccccCCccceEEee--CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence            776     56899999876      43 233443  24444444 4889998877666533    59999998763  12


Q ss_pred             eeeeeCce-eEeeEEEEEecCcEEEEEeCCCc--EEEEecCCCCCceEEeccCCCceeEEEecCCCCeEE-Ee---cCCC
Q psy13076        342 SEFLMGNQ-VEDQQVSCLWQGDYLLTVSLSGF--ISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TG---SHDG  414 (423)
Q Consensus       342 ~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~--i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~-s~---s~D~  414 (423)
                      ..+..... .....+....++..+++...++.  |.+|+..++ ..++.+..+...|..++++|+++.|+ +.   ...+
T Consensus       327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g-~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  405 (710)
T 2xdw_A          327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG-ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPG  405 (710)
T ss_dssp             EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC-CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCC
T ss_pred             eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC-CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCC
Confidence            33332222 12222333334555667777774  566666443 34566777788899999999998665 32   2457


Q ss_pred             cEEEeeCCC
Q psy13076        415 FITRWNAKT  423 (423)
Q Consensus       415 ~i~~W~~~~  423 (423)
                      +|..||+.+
T Consensus       406 ~i~~~d~~t  414 (710)
T 2xdw_A          406 IIYHCDLTK  414 (710)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEEECCC
Confidence            899999753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=4.8e-14  Score=141.60  Aligned_cols=256  Identities=13%  Similarity=0.047  Sum_probs=156.8

Q ss_pred             CCcceEEEEEECCCCCEEE-----EEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076        129 EHSCAVNVAKYSPSGFYIA-----SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV  203 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~-----s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~  203 (423)
                      +|...+...+|||||++||     +|+.+.+|++||+.+++........  ......++|+|||+.++........    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~~~~~~~~wspDg~~l~~~~~d~~~----  191 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE--GGKYATPKWTPDSKGFYYEWLPTDP----  191 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS--CCTTCCCEECTTSSEEEEEECCCCT----
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC--cccccceEEecCCCEEEEEEecCCC----
Confidence            5777899999999999999     4555678999999887653111111  1112578999999988876532210    


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce----eeeeccccccCeEEEEECCCCCEEEE
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHFAS  279 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l~s  279 (423)
                          .+..    ..                    ......|++|+..+..    +......+...+..+.|+|||++|+.
T Consensus       192 ----~~~~----~~--------------------~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~  243 (695)
T 2bkl_A          192 ----SIKV----DE--------------------RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFV  243 (695)
T ss_dssp             ----TSCG----GG--------------------GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEE
T ss_pred             ----CCcc----cc--------------------CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEE
Confidence                0000    00                    0112345666543222    22233344557889999999999988


Q ss_pred             EEecC----eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe---CCCcEEEEecCCcce--eeeeeeCc-e
Q psy13076        280 AGFDG----KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS---GDKTCKLWDIETKSA--VSEFLMGN-Q  349 (423)
Q Consensus       280 ~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s---~d~~i~iwd~~~~~~--i~~~~~~~-~  349 (423)
                      ++.++    .|++|+..+++ ...+.  .+...+....+ ++|.++++..   .++.|.+||+.+++.  ...+.... .
T Consensus       244 ~~~~~~~~~~l~~~~~~~~~-~~~l~--~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  319 (695)
T 2bkl_A          244 YILRGWSENDVYWKRPGEKD-FRLLV--KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSS  319 (695)
T ss_dssp             EEEETTTEEEEEEECTTCSS-CEEEE--ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSS
T ss_pred             EEeCCCCceEEEEEcCCCCc-eEEee--cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCC
Confidence            88776    78888765544 23332  23445566666 6666444433   257899999977642  22332221 2


Q ss_pred             eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccC-CCceeEEEecCCCCeEE----EecCCCcEEEeeCCC
Q psy13076        350 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH-NKPITALALSPDRGTVF----TGSHDGFITRWNAKT  423 (423)
Q Consensus       350 ~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~l~----s~s~D~~i~~W~~~~  423 (423)
                      .....+... ++..+++...++..++|.........+.+..+ ...|..++++|+++.|+    +....++|++||+.+
T Consensus       320 ~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          320 ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            122223333 56666777888887777655323334555554 66788999999998776    344568899999754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.65  E-value=3.3e-12  Score=113.99  Aligned_cols=280  Identities=9%  Similarity=0.020  Sum_probs=179.2

Q ss_pred             CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC
Q psy13076        129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET  208 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~  208 (423)
                      .+...+.++.++|+|.+.++...++.|.+||.. ++.. ..........+..+++++++...++.. .... ...+..+ 
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~-i~~~~~~-   86 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTEN-AANK-IGRITKK-   86 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEET-TTTE-EEEECTT-
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCC-CCCe-EEEECCC-
Confidence            345678999999999988877778899999987 4322 222222345688999999988655432 2222 2233332 


Q ss_pred             Ccceec--ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeE
Q psy13076        209 GTSVGE--ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV  286 (423)
Q Consensus       209 ~~~~~~--~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i  286 (423)
                      +. ...  +......+..+.+.+++.. .++...++.+..|+................+..++++|+|.++++...++.|
T Consensus        87 g~-~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  164 (299)
T 2z2n_A           87 GI-IKEYTLPNPDSAPYGITEGPNGDI-WFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI  164 (299)
T ss_dssp             SC-EEEEECSSTTCCEEEEEECTTSCE-EEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             Cc-EEEEeCCCcCCCceeeEECCCCCE-EEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence            22 222  2224456788999987753 5555567889999863222222222334568899999999888777677899


Q ss_pred             EEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC-ceeEeeEEEEEecCcEEE
Q psy13076        287 FLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG-NQVEDQQVSCLWQGDYLL  365 (423)
Q Consensus       287 ~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~l~  365 (423)
                      ..||. +++... +........+.+++++++|++.++...++.|.+||. +++. ..+... .......+...++|...+
T Consensus       165 ~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v  240 (299)
T 2z2n_A          165 GRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-TEFKIPTPNARPHAITAGAGIDLWF  240 (299)
T ss_dssp             EEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECSTTCEEE
T ss_pred             EEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-EEEECCCCCCCceeEEECCCCCEEE
Confidence            99998 655432 211223456889999999998887777889999998 6553 233221 112233455556777555


Q ss_pred             EEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        366 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       366 ~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      +...++.|..++.. ..........+...+.++++ +++++.++.+. +.+..++++
T Consensus       241 ~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~-~~l~~~~~~  294 (299)
T 2z2n_A          241 TEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAMEC-DKIGKLTLI  294 (299)
T ss_dssp             EETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEETT-TEEEEEEEC
T ss_pred             eccCCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEecC-CcEEEEEcC
Confidence            55577899999973 22111223455678999999 99888887664 455555543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.65  E-value=2.6e-13  Score=123.31  Aligned_cols=271  Identities=9%  Similarity=0.005  Sum_probs=175.7

Q ss_pred             ccceEEEEeccCCCCceeec-c---c--ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEe
Q psy13076         24 LSGFISYLDVNNPSTPIRVI-K---G--HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLG   97 (423)
Q Consensus        24 ~dg~i~~~d~~~~~~~~~~~-~---g--h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~   97 (423)
                      .++.|.++|..+.. ....+ .   +  .......+.+. ++++.++...+++|.+||.++++++..+.           
T Consensus        15 ~~~~l~~~d~~t~~-~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-----------   81 (328)
T 3dsm_A           15 SNATLSYYDPATCE-VENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-----------   81 (328)
T ss_dssp             CCBEEEEEETTTTE-EECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-----------
T ss_pred             CCceEEEEECCCCE-EhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-----------
Confidence            38999999987633 22222 1   1  12345677775 35566777778999999999876654331           


Q ss_pred             eCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC---C
Q psy13076         98 GDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP---I  174 (423)
Q Consensus        98 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~  174 (423)
                                                      .......++++|+++..++...++.|.+||..+.+.........   .
T Consensus        82 --------------------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~  129 (328)
T 3dsm_A           82 --------------------------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDME  129 (328)
T ss_dssp             --------------------------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred             --------------------------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcccc
Confidence                                            01235677888888555555478999999998776543333221   0


Q ss_pred             CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC----------CeE
Q psy13076        175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED----------NTI  244 (423)
Q Consensus       175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d----------~~i  244 (423)
                      ......+++  ++..+.++..+......+++..+++.+..+... .....+.++|++.. ++++..+          +.+
T Consensus       130 ~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l-~v~~~~~~~~~~~~~~~~~v  205 (328)
T 3dsm_A          130 SGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKM-WTITDGGYEGSPYGYEAPSL  205 (328)
T ss_dssp             TCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEE-EEEBCCBCTTCSSCBCCCEE
T ss_pred             CCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCE-EEEECCCccCCccccCCceE
Confidence            013456777  456666655432334566777776665555432 23567888888764 4444443          789


Q ss_pred             EEEcCCCceeeeecccc-ccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECC-CCCeEE
Q psy13076        245 AVFEGPPFKFKMTKQEH-SRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-DGTQLL  322 (423)
Q Consensus       245 ~~~~~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~  322 (423)
                      .++|....+........ ......++++|+++++.++..  .|.+||..+++...............+++++| +++..+
T Consensus       206 ~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyv  283 (328)
T 3dsm_A          206 YRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYV  283 (328)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEE
T ss_pred             EEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEE
Confidence            99998776655443321 235789999999998887654  89999998877542211111235688999999 566666


Q ss_pred             EE----eCCCcEEEEecCCcceeeeeee
Q psy13076        323 TA----SGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       323 s~----s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      +.    ..++.|.+||.. ++.+.++..
T Consensus       284 a~~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          284 ADAIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             EECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             EcccccccCCEEEEECCC-CCEEEEEEe
Confidence            66    678899999998 887777643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.65  E-value=2.9e-13  Score=123.24  Aligned_cols=273  Identities=10%  Similarity=0.047  Sum_probs=166.3

Q ss_pred             CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc
Q psy13076         48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY  127 (423)
Q Consensus        48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  127 (423)
                      ..|.+++|++++..+++.+.++.++.|.-+   ...                                          .+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------------------------------~~   40 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE---PWL------------------------------------------EI   40 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE---EEE------------------------------------------EE
T ss_pred             cccceeeecCCccceeEEeecccCcccccc---eeE------------------------------------------EE
Confidence            457788999988888888888999998221   111                                          11


Q ss_pred             cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076        128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       128 ~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      ..+...+..++|+|+|++++++..++.|.+||..+++.....  ......+.+++++|+++.+++......         
T Consensus        41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~i~~~~dg~l~v~~~~~~~---------  109 (333)
T 2dg1_A           41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF--VSHKANPAAIKIHKDGRLFVCYLGDFK---------  109 (333)
T ss_dssp             ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--ECSSSSEEEEEECTTSCEEEEECTTSS---------
T ss_pred             eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe--eCCCCCcceEEECCCCcEEEEeCCCCC---------
Confidence            223334678899999998888888999999998766543211  122356778888888764443211100         


Q ss_pred             CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec--cccccCeEEEEECCCCCEEEEEEe---
Q psy13076        208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK--QEHSRFVQAVRYSPSGSHFASAGF---  282 (423)
Q Consensus       208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~--~~~~~~i~~l~~s~~g~~l~s~s~---  282 (423)
                                                      ..+.|.+|+..........  ......+..++++|+|+++++...   
T Consensus       110 --------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  157 (333)
T 2dg1_A          110 --------------------------------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS  157 (333)
T ss_dssp             --------------------------------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred             --------------------------------CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence                                            0123444443322211111  122346788999999988776653   


Q ss_pred             ---cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE-EEEeCCCcEEEEecCC-cceeeeee------eCceeE
Q psy13076        283 ---DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL-LTASGDKTCKLWDIET-KSAVSEFL------MGNQVE  351 (423)
Q Consensus       283 ---dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~s~s~d~~i~iwd~~~-~~~i~~~~------~~~~~~  351 (423)
                         .+.|..++..+++.. .+.  .+...+..++|+|+|+.| ++.+.++.|.+||+.+ +..+..+.      ......
T Consensus       158 ~~~~~~l~~~~~~~~~~~-~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~  234 (333)
T 2dg1_A          158 TNPLGGVYYVSPDFRTVT-PII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEG  234 (333)
T ss_dssp             TBCCEEEEEECTTSCCEE-EEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred             cCCCceEEEEeCCCCEEE-Eee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCC
Confidence               356777776554432 221  123457899999999865 4555678999999964 33222211      000012


Q ss_pred             eeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCC------CceeEEEecCCCCeEEEecCC
Q psy13076        352 DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN------KPITALALSPDRGTVFTGSHD  413 (423)
Q Consensus       352 ~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~------~~v~~i~~sp~~~~l~s~s~D  413 (423)
                      ...+.+.++|...++...++.|.+|+...  ..+..+..+.      ..+.+++|+||++.|..++.+
T Consensus       235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~~g--~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          235 PDSCCIDSDDNLYVAMYGQGRVLVFNKRG--YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTS--CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCceEECCCCCEEEEEcCCCEEEEECCCC--CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            23355556788777777788999998742  3334443332      368999999998776544443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.64  E-value=1.7e-13  Score=122.65  Aligned_cols=250  Identities=13%  Similarity=0.088  Sum_probs=168.2

Q ss_pred             CceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076         38 TPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR  116 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  116 (423)
                      ..+..+..+..-..+++|+|+++ +++++..++.|..||.+++ . ..                                
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~--------------------------------   63 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP--------------------------------   63 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE--------------------------------
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE--------------------------------
Confidence            34455666677788999999998 8889999999999998764 1 11                                


Q ss_pred             ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeee-c-CCCCCeeEEEECCCCCeEEEEE
Q psy13076        117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF-H-PIGGPIKDIAWSPDNQRMVVVG  194 (423)
Q Consensus       117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~-~~~~~v~~v~~s~~~~~~~~~~  194 (423)
                                +..+...+..++++|+|+++++...++.|.+||..+++....... . .....+..++++|+|+.+++..
T Consensus        64 ----------~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~  133 (296)
T 3e5z_A           64 ----------EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDP  133 (296)
T ss_dssp             ----------EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEEC
T ss_pred             ----------EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECC
Confidence                      112334578899999999888887788999999866654321111 1 1123467899999998766532


Q ss_pred             c--C-----------CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC-Ccee---eee
Q psy13076        195 E--G-----------RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-PFKF---KMT  257 (423)
Q Consensus       195 ~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~-~~~~---~~~  257 (423)
                      .  .           ......++..+.......+......++.++|+|++..+ ++.+.++.|.+|+.. ...+   ...
T Consensus       134 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~  212 (296)
T 3e5z_A          134 TYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVH  212 (296)
T ss_dssp             SHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEE
T ss_pred             ccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeE
Confidence            0  0           00112445444433344444555667899999999875 888888999999864 2222   112


Q ss_pred             ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEE-CCCCCeEEEEeCCCcEEEEecC
Q psy13076        258 KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW-KPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       258 ~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      ...+...+..++++++|++.++.  ++.|.+|+.. ++.+..+..  +.. +.+++| .|+++.|.+++.++ +.-++.+
T Consensus       213 ~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~  285 (296)
T 3e5z_A          213 FTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETN  285 (296)
T ss_dssp             ECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred             eeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence            22344456789999999876665  8899999975 666655542  444 889999 68999888888764 4444555


Q ss_pred             Ccc
Q psy13076        337 TKS  339 (423)
Q Consensus       337 ~~~  339 (423)
                      +++
T Consensus       286 ~~~  288 (296)
T 3e5z_A          286 VRG  288 (296)
T ss_dssp             CCB
T ss_pred             ccc
Confidence            543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.64  E-value=2e-13  Score=124.97  Aligned_cols=257  Identities=13%  Similarity=0.135  Sum_probs=159.2

Q ss_pred             eEEEEEECCCCCEEEEEc---------cCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC-ceeeE
Q psy13076        133 AVNVAKYSPSGFYIASGD---------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR-ERFGH  202 (423)
Q Consensus       133 ~i~~~~~sp~~~~l~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~-~~~~~  202 (423)
                      .+...++  ||++++...         .++.|.+||+.+++...   +    ..+..++|+|||+.++.+.... .....
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l----~~~~~~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---I----ENATMPRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---E----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---c----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence            4566667  888887642         35679999988765422   1    3477899999999998876542 11223


Q ss_pred             EEe--ecCCcceecccCCCcceeEEEEecCCCeeEEEEeC--------------------------CCeEEEEcCCCcee
Q psy13076        203 VFM--SETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE--------------------------DNTIAVFEGPPFKF  254 (423)
Q Consensus       203 ~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~--------------------------d~~i~~~~~~~~~~  254 (423)
                      ++.  .+.+... .+..... +..+.|+|++..+++++..                          ...|++|+....+.
T Consensus        87 l~~~~~~~g~~~-~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A           87 IWVADLETLSSK-KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             EEEEETTTTEEE-EEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred             EEEEECCCCceE-EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence            443  3344332 2322233 8899999999875544432                          25688888766554


Q ss_pred             eeeccccccCeEEEEECCCCCEEEEEEecC---------eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076        255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDG---------KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS  325 (423)
Q Consensus       255 ~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg---------~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s  325 (423)
                      ...+.. . .+..++|+|+| ++++++.++         .|.++|  +++ ...+..  + ..+..+  +|+|++|+.++
T Consensus       165 ~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~--~-~~~~~~--spdg~~l~~~~  233 (347)
T 2gop_A          165 IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFE--K-VSFYAV--DSDGERILLYG  233 (347)
T ss_dssp             EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEE--E-ESEEEE--EECSSCEEEEE
T ss_pred             EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCc-eEEecc--C-cceeeE--CCCCCEEEEEE
Confidence            122222 3 67889999999 777776542         455555  443 333322  3 444444  99999998877


Q ss_pred             CCC--------cEEEEecCCcceeeeeeeCceeEeeE-EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCcee
Q psy13076        326 GDK--------TCKLWDIETKSAVSEFLMGNQVEDQQ-VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPIT  396 (423)
Q Consensus       326 ~d~--------~i~iwd~~~~~~i~~~~~~~~~~~~~-~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~  396 (423)
                      .+.        .|.+||  +++. ..+.......... .... +| .+++++.++...+| +.+ .. ...+..+...|.
T Consensus       234 ~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~-g~-~~~~~~~~~~v~  305 (347)
T 2gop_A          234 KPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD-GE-IKPIAKGRHWIM  305 (347)
T ss_dssp             CCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES-SS-EEEEECSSSEEE
T ss_pred             ccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC-Cc-eEEEecCCCeEE
Confidence            543        577777  4443 2222221112221 2333 55 66778888999998 763 33 344555678899


Q ss_pred             EEEecCCCCeEEEecCCCcE-EEeeC
Q psy13076        397 ALALSPDRGTVFTGSHDGFI-TRWNA  421 (423)
Q Consensus       397 ~i~~sp~~~~l~s~s~D~~i-~~W~~  421 (423)
                      +++|+|  +++++++.++.. ++|..
T Consensus       306 ~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          306 GFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             EEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             eeeeeC--cEEEEEcCCCChHHheEe
Confidence            999999  677777777665 77753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.63  E-value=1.3e-11  Score=110.02  Aligned_cols=282  Identities=10%  Similarity=-0.010  Sum_probs=182.7

Q ss_pred             ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec-CCeEEEEecCCCc
Q psy13076         44 KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA  122 (423)
Q Consensus        44 ~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~  122 (423)
                      ..+...+.++++.+++.++++...++.|.+||.. +.............+..+..+++|..++... +..+..++.+ +.
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~   88 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI   88 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence            3455688999999999988888778999999988 5443222111234455677888898887765 5678888875 33


Q ss_pred             cccc-ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceee
Q psy13076        123 ISDI-YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG  201 (423)
Q Consensus       123 ~~~~-~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~  201 (423)
                      .... +......+..+.++|+|.+.++...++.|.+||. +++.. ..........+..+++.+++...++. ..... .
T Consensus        89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~-~~~~~-i  164 (299)
T 2z2n_A           89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNALWFTE-NQNNA-I  164 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSCEEEEE-TTTTE-E
T ss_pred             EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCCEEEEe-CCCCE-E
Confidence            2211 2224457889999999998888877889999997 44322 11222223567899999998655543 22222 2


Q ss_pred             EEEeecCCcceec-ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee-eeccccccCeEEEEECCCCCEEEE
Q psy13076        202 HVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK-MTKQEHSRFVQAVRYSPSGSHFAS  279 (423)
Q Consensus       202 ~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~-~~~~~~~~~i~~l~~s~~g~~l~s  279 (423)
                      ..+.. .+..... +......+..+++.+++.. .++...++.|..|+. ..... .........+..++++++|.++++
T Consensus       165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          165 GRITE-SGDITEFKIPTPASGPVGITKGNDDAL-WFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE-EEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence            23333 3322221 2333456778999988763 455556788999987 33332 222334466889999999987666


Q ss_pred             EEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        280 AGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       280 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      ...++.|..||. +++ +..+....+...+.++++ ++|++.++.+ .+.+..+|.+++
T Consensus       242 ~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          242 EWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             ETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             ccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            657789999997 443 233322234567899999 8888877755 556777776654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.60  E-value=2.1e-12  Score=113.72  Aligned_cols=242  Identities=11%  Similarity=0.025  Sum_probs=154.3

Q ss_pred             ceeEEEEeCCCCeEE-EecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc
Q psy13076         49 PITALALSPDRGTVF-TGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY  127 (423)
Q Consensus        49 ~V~~l~~~~~~~~l~-sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  127 (423)
                      ...++++++++.+++ +.+.++.|.+||..+...... .......+..+..+++|+.++...+..+.+++.+........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-eeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeee
Confidence            667899999999887 667889999999876543221 111122344566788888777666678888988765543332


Q ss_pred             cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076        128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       128 ~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      ......+..++++|+|++.++...++.|.+|+..+......  .......+..++++|+++.                  
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g~l------------------  163 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTGLNDPDGVAVDNSGNV------------------  163 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--CCCSCCSCCCEEECTTCCE------------------
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--ccccCCCceeEEEeCCCCE------------------
Confidence            23335788999999999888877788999997544322111  0011123445555555542                  


Q ss_pred             CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEE
Q psy13076        208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF  287 (423)
Q Consensus       208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~  287 (423)
                                                 .++...++.|.+|+................+..++++|+|.++++...++.|.
T Consensus       164 ---------------------------~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~  216 (270)
T 1rwi_B          164 ---------------------------YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVV  216 (270)
T ss_dssp             ---------------------------EEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEE
T ss_pred             ---------------------------EEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEE
Confidence                                       22223344555555433222222122225578899999997777776788999


Q ss_pred             EEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076        288 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA  340 (423)
Q Consensus       288 vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~  340 (423)
                      +|+........ .. ..+...+.+++++|+|+.+++...++.|++++....+.
T Consensus       217 ~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          217 KLLAGSTTSTV-LP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EECTTCSCCEE-CC-CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             EEcCCCCccee-ec-cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            99986544322 21 12335689999999999889989999999999876653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=1.7e-12  Score=116.07  Aligned_cols=232  Identities=8%  Similarity=-0.020  Sum_probs=148.3

Q ss_pred             eeEEEEeCC-EEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          9 QVSCLWQGD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         9 ~~~~~~~~~-~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      .+++++||+ +++++..++.|+.||..+.   ...+..+...+.+++++++++++++...++.|.+||.++++.......
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~  108 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADS  108 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECE
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeec
Confidence            456666888 7778888999999998753   566777888899999999999988888889999999977764332211


Q ss_pred             C---CCCCceEEeeCCCCCeEEEec------------------CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEE
Q psy13076         88 T---QRGQPIVLGGDPKGKNFLYTN------------------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI  146 (423)
Q Consensus        88 ~---~~~~~~~~~~~~~~~~~~~~~------------------~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l  146 (423)
                      .   ....+..+..+|+|+.++...                  ...+..++.+ +.. ..+..+....+.++|+|+++++
T Consensus       109 ~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~l  186 (296)
T 3e5z_A          109 FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLL  186 (296)
T ss_dssp             ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEE
T ss_pred             cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEE
Confidence            1   111223366788998777521                  2245555544 333 2334556677899999999988


Q ss_pred             EEEccCCcEEEEEcC-CCce-eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeE
Q psy13076        147 ASGDISGKVRIWDTV-NKEH-ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINS  224 (423)
Q Consensus       147 ~s~~~d~~i~vwd~~-~~~~-~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  224 (423)
                      ++...++.|.+|++. ++.. .....+......                                            +..
T Consensus       187 v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--------------------------------------------p~~  222 (296)
T 3e5z_A          187 VSDTGDNATHRYCLNARGETEYQGVHFTVEPGK--------------------------------------------TDG  222 (296)
T ss_dssp             EEETTTTEEEEEEECSSSCEEEEEEEECCSSSC--------------------------------------------CCS
T ss_pred             EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC--------------------------------------------CCe
Confidence            778888999999986 2222 111111111112                                            223


Q ss_pred             EEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEE-CCCCCEEEEEEecCeEEEEECCCcc
Q psy13076        225 CDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRY-SPSGSHFASAGFDGKVFLYDGASAD  295 (423)
Q Consensus       225 ~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~-s~~g~~l~s~s~dg~i~vwd~~~~~  295 (423)
                      +++++++.. . .+. ++.|.+|+.. .+.......+.. +++++| +|+++.|++++.+ .+.-++.++.+
T Consensus       223 i~~d~~G~l-~-v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~  288 (296)
T 3e5z_A          223 LRVDAGGLI-W-ASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG  288 (296)
T ss_dssp             EEEBTTSCE-E-EEE-TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred             EEECCCCCE-E-EEc-CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence            444455542 2 222 6677777754 333333334444 788999 6899988888766 45555655544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.59  E-value=1.9e-11  Score=109.05  Aligned_cols=274  Identities=9%  Similarity=-0.002  Sum_probs=169.9

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      ..+++.+||.+.++...++.|.++|.. .......+..+...+..+++.+++.++++...++.|..+|.+ +........
T Consensus        23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~  100 (300)
T 2qc5_A           23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLP  100 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred             ceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCC
Confidence            345666688888877788999999976 222222233445678899999999988888878999999988 544321111


Q ss_pred             CCCCCceEEeeCCCCCeEEEec-CCeEEEEecCCCccccc-ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~-~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                      .....+..+..+++|+.++... +..+..++.+ ++.... +......+..+.+.|+|++.++...++.|..+|. +++.
T Consensus       101 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~  178 (300)
T 2qc5_A          101 QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL  178 (300)
T ss_dssp             STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE
Confidence            1223455667778888877765 5678888876 444322 2334467889999999997777766788999987 3332


Q ss_pred             eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076        166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA  245 (423)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~  245 (423)
                      .. .........+..+++.+++...+                                             +....+.|.
T Consensus       179 ~~-~~~~~~~~~~~~i~~d~~g~l~v---------------------------------------------~~~~~~~i~  212 (300)
T 2qc5_A          179 EE-YPLPTNAAAPVGITSGNDGALWF---------------------------------------------VEIMGNKIG  212 (300)
T ss_dssp             EE-EECSSTTCCEEEEEECTTSSEEE---------------------------------------------EETTTTEEE
T ss_pred             EE-eeCCCCCCCcceEEECCCCCEEE---------------------------------------------EccCCCEEE
Confidence            21 11111123345566665554222                                             122233444


Q ss_pred             EEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076        246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS  325 (423)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s  325 (423)
                      .|+................+..++++++|.+.++...++.|..|+. +++.. .+........+.+++++++|+..++..
T Consensus       213 ~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          213 RITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             EECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred             EEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc
Confidence            4443111111111223445788999999987766656789999997 44332 222222345578899999998777655


Q ss_pred             CCCcEEEEec
Q psy13076        326 GDKTCKLWDI  335 (423)
Q Consensus       326 ~d~~i~iwd~  335 (423)
                       . .|..+|.
T Consensus       291 -~-~i~~~~p  298 (300)
T 2qc5_A          291 -C-KIGKLNL  298 (300)
T ss_dssp             -S-EEEEEEE
T ss_pred             -C-ceEEeCC
Confidence             4 6666664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.57  E-value=1.4e-12  Score=131.87  Aligned_cols=282  Identities=12%  Similarity=0.005  Sum_probs=166.3

Q ss_pred             EEEEeCCEEEEEeccce---EEEEeccC----CCCceee------cccccCceeEEEEeCCCCeEEEecCC-----CceE
Q psy13076         11 SCLWQGDYLLTVSLSGF---ISYLDVNN----PSTPIRV------IKGHNKPITALALSPDRGTVFTGSHD-----GFIT   72 (423)
Q Consensus        11 ~~~~~~~~~~~~~~dg~---i~~~d~~~----~~~~~~~------~~gh~~~V~~l~~~~~~~~l~sg~~D-----~~i~   72 (423)
                      ...+||++++-...++.   -.+|....    .......      -++|...+..++|||||++|+.++.+     .+|+
T Consensus       113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             CCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred             CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence            34589999998877654   34454332    1222222      13455578899999999998876544     4699


Q ss_pred             EeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC
Q psy13076         73 RWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS  152 (423)
Q Consensus        73 vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d  152 (423)
                      +||+++++.+....                                           +...+..+.|+|| +.|+.++.+
T Consensus       193 v~dl~tg~~~~~~~-------------------------------------------~~~~~~~~~wspD-~~l~~~~~~  228 (741)
T 1yr2_A          193 FVGVADGKPLADEL-------------------------------------------KWVKFSGLAWLGN-DALLYSRFA  228 (741)
T ss_dssp             EEETTTCCEEEEEE-------------------------------------------EEEESCCCEESTT-SEEEEEECC
T ss_pred             EEECCCCCCCCccC-------------------------------------------CCceeccEEEECC-CEEEEEEec
Confidence            99998875432100                                           0001134568888 777776665


Q ss_pred             Cc--------------EEEEEcCCCce--eEEeeecCCCCCeeEEEECCCCCeEEEEEcCC---ceeeEEEeecCCc-c-
Q psy13076        153 GK--------------VRIWDTVNKEH--ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR---ERFGHVFMSETGT-S-  211 (423)
Q Consensus       153 ~~--------------i~vwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~-~-  211 (423)
                      +.              |.+|++.+...  ............+..+.|+|||++++......   .....+++.+.+. . 
T Consensus       229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  308 (741)
T 1yr2_A          229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP  308 (741)
T ss_dssp             CC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred             CcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence            43              88999866542  12112111222478899999999988876532   2233444544441 2 


Q ss_pred             eecccCCCcceeEEEEecCCCeeEEEEeC---CCeEEEEcCCCc--eeeeeccccccCeEEEEECCCCCEEEEEEecCeE
Q psy13076        212 VGEISGQSKPINSCDFKPSRPFRIITGSE---DNTIAVFEGPPF--KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV  286 (423)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~---d~~i~~~~~~~~--~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i  286 (423)
                      ...+..+....... +.|++..+++....   +..|.+|+....  ........+...+..++++ ++.++++...|+..
T Consensus       309 ~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~  386 (741)
T 1yr2_A          309 VTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS  386 (741)
T ss_dssp             CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred             cEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence            34444433333333 34777764444332   345888886542  2222233444456677777 56678888889987


Q ss_pred             EEEECC-CccceecccccccCCCeEEEEECCCCCeEEEE----eCCCcEEEEecCCcc
Q psy13076        287 FLYDGA-SADLVSELGNPAHKGGVYAVAWKPDGTQLLTA----SGDKTCKLWDIETKS  339 (423)
Q Consensus       287 ~vwd~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~----s~d~~i~iwd~~~~~  339 (423)
                      ++|... +++....+.. .+.+.+..++++|+++.|+..    ...++|.+||+.+++
T Consensus       387 ~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          387 QVLAFDLDGKPAGAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEETTSCEEEECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEeCCCCceeeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            766543 3444444432 135668889999998866622    234689999998775

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.55  E-value=9e-11  Score=104.63  Aligned_cols=279  Identities=8%  Similarity=-0.011  Sum_probs=177.0

Q ss_pred             cceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc
Q psy13076        131 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT  210 (423)
Q Consensus       131 ~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (423)
                      ...+.++.+.++|++.++...++.|.+||.. ++.. ..........+..+++.+++...++. ..... ...++.. +.
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~-~~~~~-v~~~d~~-g~   93 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLGDIWFTE-NGANK-IGKLSKK-GG   93 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSCEEEEE-TTTTE-EEEECTT-SC
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCCCEEEEe-cCCCe-EEEECCC-CC
Confidence            3567889999999988888788999999976 4332 22222223567899999998755543 22222 2333333 32


Q ss_pred             ce-ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee-eeccccccCeEEEEECCCCCEEEEEEecCeEEE
Q psy13076        211 SV-GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK-MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL  288 (423)
Q Consensus       211 ~~-~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~-~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~v  288 (423)
                      .. ..+......+..+++.+++.. .++...++.|..++.. .+.. .........+..++++|+|++.++...++.|..
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  171 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGLNGDI-WFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR  171 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCE-EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             eEEecCCCCCCCCccceECCCCCE-EEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence            21 112223456788899887763 5555557889999865 3322 222333456789999999997776666789999


Q ss_pred             EECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEe
Q psy13076        289 YDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVS  368 (423)
Q Consensus       289 wd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~  368 (423)
                      ++. +++... +....+...+.+++++++|+..++....+.|.+||. +++...............+...++|...++..
T Consensus       172 ~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  248 (300)
T 2qc5_A          172 ITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW  248 (300)
T ss_dssp             ECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             ECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence            997 554332 222233456889999999988877767778999998 44432221111112233455556777555555


Q ss_pred             CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        369 LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       369 ~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      .++.|..++.. .......+......+.++++.|++++.++.. . .|..+|++
T Consensus       249 ~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          249 GANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             TTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             CCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            67889999873 2222222333456789999999998777666 4 67777754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=6.8e-12  Score=110.79  Aligned_cols=242  Identities=12%  Similarity=0.048  Sum_probs=163.2

Q ss_pred             CCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCC-cceEEE
Q psy13076         58 DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEH-SCAVNV  136 (423)
Q Consensus        58 ~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h-~~~i~~  136 (423)
                      .+++|++++.|+.|.+||.++++++-.+........-.+...|+|+.++ +.++.+..++. +++.+..+..+ ...+.+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            4678999999999999999999888777653312233456678998877 66778999998 78888877765 357889


Q ss_pred             EEECCCCCEEEEEcc-CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecc
Q psy13076        137 AKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI  215 (423)
Q Consensus       137 ~~~sp~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (423)
                      +.+.|+|+++++.+. ++.+..+|. +++.+.......                                   +     .
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~-----------------------------------~-----~  120 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET-----------------------------------G-----I  120 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC-----------------------------------S-----C
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC-----------------------------------C-----C
Confidence            999999999998776 555555553 333322211110                                   0     0


Q ss_pred             cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc
Q psy13076        216 SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD  295 (423)
Q Consensus       216 ~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~  295 (423)
                      ..+......+...+++.+ +++...++.+..||.. .+...+.... ..+..+...++|..+++++.++.|..+|..+++
T Consensus       121 ~~~~~~~~~v~~~~~G~~-lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          121 ERPHAQFRQINKNKKGNY-LVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             SSGGGSCSCCEECTTSCE-EEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred             CcccccccCceECCCCCE-EEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence            001112223345556654 6677778889999866 6666555443 234567788999999998888899999999899


Q ss_pred             ceecccccc----cCCCeEEEEECCCCCeEEEEeCC--------CcEEEEec-CCcceeeeee
Q psy13076        296 LVSELGNPA----HKGGVYAVAWKPDGTQLLTASGD--------KTCKLWDI-ETKSAVSEFL  345 (423)
Q Consensus       296 ~~~~~~~~~----~~~~i~~l~~~~~~~~l~s~s~d--------~~i~iwd~-~~~~~i~~~~  345 (423)
                      .+.++....    ....+.+++..++|+.+++.+..        +..+++++ .+++.+-++.
T Consensus       198 ~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          198 IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred             EEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence            877764211    12237888999999999887522        23466666 4566555543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.55  E-value=7.1e-12  Score=126.74  Aligned_cols=256  Identities=12%  Similarity=0.096  Sum_probs=152.2

Q ss_pred             CCcceEEEEEECCCCCEEEEEccC-----CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076        129 EHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV  203 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~  203 (423)
                      +|...+....|||||++||.+..+     .+|++||+.+++.... ....  ..+..++|+|| +.++.........   
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~--~~~~~~~wspD-~~l~~~~~~~~~~---  232 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKW--VKFSGLAWLGN-DALLYSRFAEPKE---  232 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEE--EESCCCEESTT-SEEEEEECCCC-----
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCC--ceeccEEEECC-CEEEEEEecCccc---
Confidence            455678899999999999887654     4699999998876432 1111  12356889999 8888765332100   


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce----eeeeccccccCeEEEEECCCCCEEEE
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK----FKMTKQEHSRFVQAVRYSPSGSHFAS  279 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l~s  279 (423)
                           +.   .                    +-.......|++|+..+..    +......+...+..+.|||||++|+.
T Consensus       233 -----~~---~--------------------~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~  284 (741)
T 1yr2_A          233 -----GQ---A--------------------FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVI  284 (741)
T ss_dssp             ----------------------------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             -----cc---c--------------------cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEE
Confidence                 00   0                    0001112345555543221    22222233345788999999999988


Q ss_pred             EEecC-----eEEEEECCCc--cceecccccccCCCeEEEEECCCCCeEEEEeCC----CcEEEEecCCcc-eeeeeeeC
Q psy13076        280 AGFDG-----KVFLYDGASA--DLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD----KTCKLWDIETKS-AVSEFLMG  347 (423)
Q Consensus       280 ~s~dg-----~i~vwd~~~~--~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d----~~i~iwd~~~~~-~i~~~~~~  347 (423)
                      .+.++     .|++||..++  +....+.  .+........ +|+|+.|+..+.+    +.|.+||+.++. ....+...
T Consensus       285 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~  361 (741)
T 1yr2_A          285 TSSEGTDPVNTVHVARVTNGKIGPVTALI--PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE  361 (741)
T ss_dssp             EEECTTCSCCEEEEEEEETTEECCCEEEE--CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred             EEEccCCCcceEEEEECCCCCCcccEEec--CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence            88654     8999998776  3133343  2333444443 4899988877764    459999988752 33333322


Q ss_pred             ceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc-CCCceeEEEecCCCCeEE----EecCCCcEEEeeCC
Q psy13076        348 NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVF----TGSHDGFITRWNAK  422 (423)
Q Consensus       348 ~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~l~----s~s~D~~i~~W~~~  422 (423)
                      .......+... ++..+++...++..++|.........+.+.. +...|..++++|+++.|+    +....++|+.||+.
T Consensus       362 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          362 SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred             CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            22111122222 4555667778887666655422333445544 366789999999998766    33456889999975


Q ss_pred             C
Q psy13076        423 T  423 (423)
Q Consensus       423 ~  423 (423)
                      +
T Consensus       441 t  441 (741)
T 1yr2_A          441 T  441 (741)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.54  E-value=4.1e-12  Score=115.93  Aligned_cols=289  Identities=13%  Similarity=0.116  Sum_probs=180.8

Q ss_pred             cceeeEEE--EeCCEEEEEec-----cceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec----------CC
Q psy13076          6 EDQQVSCL--WQGDYLLTVSL-----SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS----------HD   68 (423)
Q Consensus         6 ~~~~~~~~--~~~~~~~~~~~-----dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~----------~D   68 (423)
                      ++-.++..  ||++.+..+..     ++.|.++|..+ .+.+.++..-..| . ++++|++++|+.++          .+
T Consensus        32 ~~~~~~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t-~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           32 DEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             cccceeeccCCCCCEEEEEcCcccCCCCEEEEEECCC-CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence            34444444  58988888865     68999999876 4556666644455 4 99999999887765          36


Q ss_pred             CceEEeecCCcceeecccCCC------CCCceEEeeCCCCCeEEEec---CCeEEEEecCCCcccccccCCcceEEEEEE
Q psy13076         69 GFITRWNAKTEYIFATLPRTQ------RGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKY  139 (423)
Q Consensus        69 ~~i~vW~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~  139 (423)
                      +.|.+||.++.++...+....      ...+-.+.++|+|+.++..+   ++.+.+.|+++.+....+.-..+   ...+
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~  185 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIF  185 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceee
Confidence            789999999998877764221      11344577889998877654   47899999998887766542211   1223


Q ss_pred             CCCCCEEEEEccCCcEEEEEcCC-CceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCC
Q psy13076        140 SPSGFYIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ  218 (423)
Q Consensus       140 sp~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (423)
                      ....+.+++.+.||++-+.++.. ++.. ... ..        -|.++...+                            
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~-~~--------~~~~~~~~~----------------------------  227 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITH-TE--------VFHPEDEFL----------------------------  227 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCE-EEE-CC--------CCSCTTSCB----------------------------
T ss_pred             cCCCceeEEECCCCCEEEEECCCCCeEE-Eee-cc--------eeccccccc----------------------------
Confidence            22445666777788888888764 2221 100 00        000110000                            


Q ss_pred             CcceeEEEEe-cCCCeeEEEEeCCCeEEEEcCCCce--eeeecc----------ccccCeEEEEECCCCCEEEEEEe---
Q psy13076        219 SKPINSCDFK-PSRPFRIITGSEDNTIAVFEGPPFK--FKMTKQ----------EHSRFVQAVRYSPSGSHFASAGF---  282 (423)
Q Consensus       219 ~~~i~~~~~~-~~~~~~~~s~s~d~~i~~~~~~~~~--~~~~~~----------~~~~~i~~l~~s~~g~~l~s~s~---  282 (423)
                         .....|. +++.  ++-.+.++.+++.|.....  ......          -.......++++|+++.+.....   
T Consensus       228 ---~~~~~~~~~dG~--~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~  302 (386)
T 3sjl_D          228 ---INHPAYSQKAGR--LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD  302 (386)
T ss_dssp             ---CSCCEEETTTTE--EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred             ---cccceeEcCCCc--EEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence               0001222 2232  2223446677777653322  111110          01223345778999987766543   


Q ss_pred             -------cCeEEEEECCCccceecccccccCCCeEEEEECCCCC-eEEE-EeCCCcEEEEecCCcceeeeeee
Q psy13076        283 -------DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLT-ASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       283 -------dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s-~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                             .+.|.++|.++++.+.++..   ...+++++++||++ +|++ ...+++|.++|..+++.+++...
T Consensus       303 ~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          303 EWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence                   35799999999999888753   23578999999996 6655 45589999999999998887643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.53  E-value=1.3e-11  Score=108.65  Aligned_cols=239  Identities=8%  Similarity=-0.001  Sum_probs=151.8

Q ss_pred             CeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee
Q psy13076        177 PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM  256 (423)
Q Consensus       177 ~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~  256 (423)
                      ...+++++++++.++++..... ....+.................+..+++.+++.. .++.. ++.|..|+........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l-~v~~~-~~~i~~~d~~~~~~~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYG-RVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTV-YVTDF-NNRVVTLAAGSNNQTV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSC-EEEEECC-----EECCCCSCCSCCCEEECTTCCE-EEEET-TTEEEEECTTCSCCEE
T ss_pred             CccceEECCCCCEEEEccCCCC-cEEEecCCCcccceEeeCCcCCcceeEECCCCCE-EEEcC-CCEEEEEeCCCceEee
Confidence            4678899999874431322222 2233333222211111223345778899988763 44444 8899999865443322


Q ss_pred             eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      ........+..++++|+|+++++...++.|.+|+..+.......  ......+.+++++|+|+++++...++.|.+||..
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  179 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE  179 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec--cccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence            22223356789999999998887777899999976554332211  1223456789999999988887778899999987


Q ss_pred             CcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcE
Q psy13076        337 TKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI  416 (423)
Q Consensus       337 ~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i  416 (423)
                      .......... .......+...++|..+++...++.|.+|+...... ......+...+.+++++|+++++++.+.++.|
T Consensus       180 ~~~~~~~~~~-~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          180 SNNQVVLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             TCCEEECCCS-SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC-EECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             CCceEeeccc-CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc-eeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence            7654322111 112233455556776666666788999999865432 22223344678999999999998999999999


Q ss_pred             EEeeCC
Q psy13076        417 TRWNAK  422 (423)
Q Consensus       417 ~~W~~~  422 (423)
                      ++++..
T Consensus       258 ~~~~~~  263 (270)
T 1rwi_B          258 VKLTSL  263 (270)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            999864

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.53  E-value=1.1e-10  Score=107.69  Aligned_cols=226  Identities=13%  Similarity=0.069  Sum_probs=137.6

Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc----------cCCcEEEEEcCCCceeEEeeec-C----CCC
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVNKEHILKNEFH-P----IGG  176 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~-~----~~~  176 (423)
                      .+.++|..+++....+..-..+  .+.++|||++++.+.          .++.|.+||..+.+........ .    ...
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            6678888887776655533333  889999999998886          3678999999876554332221 0    012


Q ss_pred             CeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceec-ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee
Q psy13076        177 PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK  255 (423)
Q Consensus       177 ~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~  255 (423)
                      ....++|+|||++++++.........+++ ++++.+.. +....    ++.+.|.++..+++.+.|+.+.+++. ..+..
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~  199 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA  199 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence            23578999999999988754334455667 77766655 43221    24455666656777778999988887 44433


Q ss_pred             eecc-----ccccC-eEEEEECCCCCEEEEEEecCeEEEEECCCccc--eecccccc--------cCCCeEEEEECCCCC
Q psy13076        256 MTKQ-----EHSRF-VQAVRYSPSGSHFASAGFDGKVFLYDGASADL--VSELGNPA--------HKGGVYAVAWKPDGT  319 (423)
Q Consensus       256 ~~~~-----~~~~~-i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~--------~~~~i~~l~~~~~~~  319 (423)
                      ....     ....+ .....+.+++..++..+.++.+.+.|......  ...+....        .......++++|+++
T Consensus       200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~  279 (373)
T 2mad_H          200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD  279 (373)
T ss_pred             EEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence            1110     11111 12345667766555555788999999865431  12221000        112234477888887


Q ss_pred             eEEEEeC----------CCcEEEEecCCcceeeeee
Q psy13076        320 QLLTASG----------DKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       320 ~l~s~s~----------d~~i~iwd~~~~~~i~~~~  345 (423)
                      .|..+..          ++.|.++|..+++.+.++.
T Consensus       280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~  315 (373)
T 2mad_H          280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS  315 (373)
T ss_pred             EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE
Confidence            7666543          3467788887776665543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=6.3e-12  Score=114.15  Aligned_cols=260  Identities=13%  Similarity=0.083  Sum_probs=170.5

Q ss_pred             cCCcEEEEEcCCCceeEEee----ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEE
Q psy13076        151 ISGKVRIWDTVNKEHILKNE----FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCD  226 (423)
Q Consensus       151 ~d~~i~vwd~~~~~~~~~~~----~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  226 (423)
                      .+++|.++|.++++......    ..........+.+.  +..+.++... .....+++..+++.+..+. ....+..++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~-~~~v~viD~~t~~~~~~i~-~~~~p~~i~   90 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNN-SHVIFAIDINTFKEVGRIT-GFTSPRYIH   90 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGG-GTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcC-CCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence            47899999988766432110    01223445677774  3445554442 3345667777777777664 345678889


Q ss_pred             EecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccc-----cCeEEEEECCCCCEEEEEE--ecCeEEEEECCCccceec
Q psy13076        227 FKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS-----RFVQAVRYSPSGSHFASAG--FDGKVFLYDGASADLVSE  299 (423)
Q Consensus       227 ~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~-----~~i~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~~~~~  299 (423)
                      +++++ ...++...++.|.++|....+.........     .....+++  ++..+..+.  .++.|.++|..+++...+
T Consensus        91 ~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~  167 (328)
T 3dsm_A           91 FLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDE  167 (328)
T ss_dssp             EEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEE
T ss_pred             EeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEE
Confidence            98887 434444478999999988776654333222     13445666  344554444  488999999999887766


Q ss_pred             ccccccCCCeEEEEECCCCCeEEEEeCC----------CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeC
Q psy13076        300 LGNPAHKGGVYAVAWKPDGTQLLTASGD----------KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL  369 (423)
Q Consensus       300 ~~~~~~~~~i~~l~~~~~~~~l~s~s~d----------~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~  369 (423)
                      +..   ......++++|+|++++++..+          +.|.++|..+++....+..........+.+.++++.+.++..
T Consensus       168 i~~---g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          168 LTI---GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             EEC---SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred             EEc---CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence            642   2335678999999988887665          789999999888776654322123445666778888877654


Q ss_pred             CCcEEEEecCCCCCceE-EeccCCCceeEEEecC-CCCeEEEe----cCCCcEEEeeCC
Q psy13076        370 SGFISYLDVNNPSTPIR-VIKGHNKPITALALSP-DRGTVFTG----SHDGFITRWNAK  422 (423)
Q Consensus       370 ~~~i~~~~~~~~~~~~~-~~~~h~~~v~~i~~sp-~~~~l~s~----s~D~~i~~W~~~  422 (423)
                        .+..+|..+...... .+..+......++++| +++++++.    ..++.|.+||.+
T Consensus       245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence              899999876543211 1122246688999999 55566676    678999999864

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=1.3e-11  Score=108.88  Aligned_cols=168  Identities=10%  Similarity=0.023  Sum_probs=115.6

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeeccccc-CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN-KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP   93 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~   93 (423)
                      +|++|++++.|+.|.+||..+ .+.+-.+..|. ..+.++++.|+|++|++  .++.|+.||. +++++-.+........
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDT-KEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTT-TEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCC-CeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            478999999999999999866 45566777665 57899999999999884  5788999999 6776666543222233


Q ss_pred             eEEeeCCCCCeEEEecC--CeEEEEecCCCccccccc------CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076         94 IVLGGDPKGKNFLYTNG--NSVIIRNIENPAISDIYT------EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~------~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                      ..+...++|+.++...+  ..+..++. +++....+.      ++......+.+.++|.++++...++.|..||.+ ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            34567788988887654  34555554 454443332      222344556788999999999999999999987 776


Q ss_pred             eEEeeecCCCCCeeEEEECCCCCeEE
Q psy13076        166 ILKNEFHPIGGPIKDIAWSPDNQRMV  191 (423)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~s~~~~~~~  191 (423)
                      ++.....   ....++.+.+++..++
T Consensus       158 ~w~~~~~---~~~~~~~~~~~g~~~v  180 (276)
T 3no2_A          158 LNSVKLS---GTPFSSAFLDNGDCLV  180 (276)
T ss_dssp             EEEEECS---SCCCEEEECTTSCEEE
T ss_pred             EEEEECC---CCccceeEcCCCCEEE
Confidence            6554332   2334555566655444

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=4.4e-11  Score=107.59  Aligned_cols=244  Identities=10%  Similarity=0.067  Sum_probs=152.6

Q ss_pred             ccccCceeEEEEeCCCCeEEE-------ecCCCceEEeecCCcceeecccC---CCCCCceEEeeCCC-CCeEEEecCCe
Q psy13076         44 KGHNKPITALALSPDRGTVFT-------GSHDGFITRWNAKTEYIFATLPR---TQRGQPIVLGGDPK-GKNFLYTNGNS  112 (423)
Q Consensus        44 ~gh~~~V~~l~~~~~~~~l~s-------g~~D~~i~vW~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~  112 (423)
                      .+.-....+++|++++.++++       +..++.|.+||..+++.......   .....+..+..+++ |+.++...+..
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~   93 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence            334456679999999998888       77889999999887765322110   01234556778888 77777776678


Q ss_pred             EEEEecCCCccccc-cc---C-CcceEEEEEECCCCCEEEEEccC---------------CcEEEEEcCCCceeEEeeec
Q psy13076        113 VIIRNIENPAISDI-YT---E-HSCAVNVAKYSPSGFYIASGDIS---------------GKVRIWDTVNKEHILKNEFH  172 (423)
Q Consensus       113 ~~i~~~~~~~~~~~-~~---~-h~~~i~~~~~sp~~~~l~s~~~d---------------~~i~vwd~~~~~~~~~~~~~  172 (423)
                      +.+++.+ ++.... ..   + +...+..++++|+|++.++...+               +.|..+|.. ++......  
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--  169 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--  169 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--
Confidence            8889887 665443 22   1 12457899999999888877654               345555543 22211100  


Q ss_pred             CCCCCeeEEEEC----CCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076        173 PIGGPIKDIAWS----PDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE  248 (423)
Q Consensus       173 ~~~~~v~~v~~s----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~  248 (423)
                       .......++|+    |+++.+.++.                                            ..++.|.+|+
T Consensus       170 -~~~~~~~i~~~~~~d~dg~~l~v~~--------------------------------------------~~~~~i~~~~  204 (314)
T 1pjx_A          170 -AFQFPNGIAVRHMNDGRPYQLIVAE--------------------------------------------TPTKKLWSYD  204 (314)
T ss_dssp             -EESSEEEEEEEECTTSCEEEEEEEE--------------------------------------------TTTTEEEEEE
T ss_pred             -CCCCcceEEEecccCCCCCEEEEEE--------------------------------------------CCCCeEEEEE
Confidence             01223455666    6555443332                                            2233344443


Q ss_pred             CC-Cce-----eeeeccccc-cCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeE
Q psy13076        249 GP-PFK-----FKMTKQEHS-RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL  321 (423)
Q Consensus       249 ~~-~~~-----~~~~~~~~~-~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  321 (423)
                      .. ..+     .......+. ..+..++++++|.++++...++.|..||..+++....+.  .+...+.+++|+|+++.|
T Consensus       205 ~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l  282 (314)
T 1pjx_A          205 IKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             EEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEE
T ss_pred             CCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEE
Confidence            21 010     011111222 346779999999988887788999999988676655543  244678999999999954


Q ss_pred             -EEEeCCCcEEEEecCCc
Q psy13076        322 -LTASGDKTCKLWDIETK  338 (423)
Q Consensus       322 -~s~s~d~~i~iwd~~~~  338 (423)
                       ++...++.|..|++...
T Consensus       283 ~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          283 FVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEETTTTEEEEEECSSC
T ss_pred             EEEeCCCCeEEEEeCCCC
Confidence             55556678999998653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.48  E-value=3.5e-10  Score=104.27  Aligned_cols=285  Identities=13%  Similarity=0.024  Sum_probs=171.3

Q ss_pred             EeCCEEEEEec--cc---eEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec----------CCCceEEeecCC
Q psy13076         14 WQGDYLLTVSL--SG---FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS----------HDGFITRWNAKT   78 (423)
Q Consensus        14 ~~~~~~~~~~~--dg---~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~----------~D~~i~vW~~~~   78 (423)
                      +|++++..+..  .+   .|.++|..+ .+.+.++..-..+  .++++||+++|+.+.          .++.|.++|..+
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t-~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGS-GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCC-CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            68888887764  22   889999876 4455566544445  899999999888775          378899999998


Q ss_pred             cceeecccCC-C-----CCCceEEeeCCCCCeEEEec---CCeEEEEecCCCccccc-ccCCcceEEEEEECCCC-CEEE
Q psy13076         79 EYIFATLPRT-Q-----RGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSG-FYIA  147 (423)
Q Consensus        79 ~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~-~~~h~~~i~~~~~sp~~-~~l~  147 (423)
                      .+....+... .     ...+-.+..+|+|+.++..+   .+.+.+.| ++++.... +.-. ..   +.+.|++ +.++
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~---~~~~~~~~~~~~  181 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TC---YHIHPGAPSTFY  181 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ce---EEEEeCCCceEE
Confidence            7766654321 0     11234577899999887754   36788899 88877666 4322 12   3344544 4556


Q ss_pred             EEccCCcEEEEEcCCCceeEEeee---cCCCCCe-eEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCccee
Q psy13076        148 SGDISGKVRIWDTVNKEHILKNEF---HPIGGPI-KDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN  223 (423)
Q Consensus       148 s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~v-~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  223 (423)
                      +.+.|+.+.++|. +.+.......   .....++ ....+.+++..++..+...  ...+.+.....             
T Consensus       182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~v~vid~~~~~-------------  245 (373)
T 2mad_H          182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG--KILQADISAAG-------------  245 (373)
T ss_pred             EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc--eEEEEeccCCc-------------
Confidence            6778999999999 6654421110   0001111 1234455544433332111  11111110000             


Q ss_pred             EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe----------cCeEEEEECCC
Q psy13076        224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF----------DGKVFLYDGAS  293 (423)
Q Consensus       224 ~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~----------dg~i~vwd~~~  293 (423)
                              . .+        +.-|+....... ...-.......++++|+++.+..+..          ++.|.++|..+
T Consensus       246 --------~-~v--------~~~~~~~~~~~~-~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t  307 (373)
T 2mad_H          246 --------A-TN--------KAPIDALSGGRK-ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             --------c-eE--------eeeeeecCCccc-ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC
Confidence                    0 00        001111000000 00001122344778999987766543          35799999999


Q ss_pred             ccceecccccccCCCeEEEEECCCCC-eEEEEe-CCCcEEEEecCCcceeee
Q psy13076        294 ADLVSELGNPAHKGGVYAVAWKPDGT-QLLTAS-GDKTCKLWDIETKSAVSE  343 (423)
Q Consensus       294 ~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~i~~  343 (423)
                      ++.+.++..   .....+++|+|||+ +|+++. .+++|.++|..+++.+.+
T Consensus       308 ~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          308 GQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            998887743   23578999999999 777776 589999999999988766

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.43  E-value=2.2e-10  Score=104.51  Aligned_cols=296  Identities=15%  Similarity=0.152  Sum_probs=186.0

Q ss_pred             eeCCCCCeEEEec------CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc----------cCCcEEEEEc
Q psy13076         97 GGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDT  160 (423)
Q Consensus        97 ~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~----------~d~~i~vwd~  160 (423)
                      ...|++..++..+      .+.+.+.|..+.+....+..-..+ . +.++|||++++.++          .++.|.+||.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            4467777666543      347888999888887766543444 4 99999999887765          3678999999


Q ss_pred             CCCceeEEeeecC-----CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeE
Q psy13076        161 VNKEHILKNEFHP-----IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRI  235 (423)
Q Consensus       161 ~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  235 (423)
                      .+.+.........     .......++|+|||+++++..........+++..+.+.+..+.....    ....|.+...+
T Consensus       117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~----~~~~P~g~~~~  192 (386)
T 3sjl_D          117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----YHIFPTAPDTF  192 (386)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEE
T ss_pred             CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc----ceeecCCCcee
Confidence            9877655443321     11234679999999999887654344456777777777666643221    12234444456


Q ss_pred             EEEeCCCeEEEEcCCC-ceeeeecccc----ccCe-EEEEE-CCCCCEEEEEEecCeEEEEECCCcc--ceeccc-----
Q psy13076        236 ITGSEDNTIAVFEGPP-FKFKMTKQEH----SRFV-QAVRY-SPSGSHFASAGFDGKVFLYDGASAD--LVSELG-----  301 (423)
Q Consensus       236 ~s~s~d~~i~~~~~~~-~~~~~~~~~~----~~~i-~~l~~-s~~g~~l~s~s~dg~i~vwd~~~~~--~~~~~~-----  301 (423)
                      ++.+.||.+.+.+... .+........    ...+ ....| .++|++++ .+.+|.|.+.|..+..  ....+.     
T Consensus       193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~  271 (386)
T 3sjl_D          193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEA  271 (386)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred             EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccc
Confidence            6777888887777543 3321111111    1111 12345 46776554 5668999999986554  222221     


Q ss_pred             ---ccccCCCeEEEEECCCCCeEEEEeC----------CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc-EEEEE
Q psy13076        302 ---NPAHKGGVYAVAWKPDGTQLLTASG----------DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD-YLLTV  367 (423)
Q Consensus       302 ---~~~~~~~i~~l~~~~~~~~l~s~s~----------d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~-~l~~~  367 (423)
                         ..-..+....++++|+++.|.....          ..+|-+.|+++++.++++..+.  ....+.+.++++ .|.+.
T Consensus       272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~t  349 (386)
T 3sjl_D          272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYAL  349 (386)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEE
T ss_pred             cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEE
Confidence               0001223345788999988877643          2579999999999998886653  334566778886 55554


Q ss_pred             e-CCCcEEEEecCCCCCceEEeccCCCceeEEEecCC
Q psy13076        368 S-LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD  403 (423)
Q Consensus       368 ~-~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~  403 (423)
                      . .++.+.++|..+.+ .++.+.. .+.-+.+.+++|
T Consensus       350 n~~~~~VsViD~~t~k-~~~~i~~-~~~p~~l~~s~d  384 (386)
T 3sjl_D          350 STGDKTLYIHDAESGE-ELRSVNQ-LGHGPQVITTAD  384 (386)
T ss_dssp             ETTTTEEEEEETTTCC-EEEEECC-CCSSCCEEEECC
T ss_pred             cCCCCeEEEEECCCCc-EEEEecC-CCCCceeEECCc
Confidence            4 58899999998864 3444332 122445566655

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.41  E-value=9.7e-11  Score=108.79  Aligned_cols=280  Identities=10%  Similarity=0.024  Sum_probs=170.0

Q ss_pred             eCCEEEEEecc-----ceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec----------CCCceEEeecCCc
Q psy13076         15 QGDYLLTVSLS-----GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS----------HDGFITRWNAKTE   79 (423)
Q Consensus        15 ~~~~~~~~~~d-----g~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~----------~D~~i~vW~~~~~   79 (423)
                      |++.+..+...     +.|.++|+.+ .+.+.++.--..|  .++++||+++|+.+.          .++.|.++|..+.
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t-~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGST-GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCC-CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            67766666553     7999999976 4555566543456  799999999887775          4678999999987


Q ss_pred             ceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc--CCcEEE
Q psy13076         80 YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI--SGKVRI  157 (423)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~--d~~i~v  157 (423)
                      ++...+.....                              +..   .  .-.....+.|+|||++++.+..  ++.|.+
T Consensus       160 ~vv~~I~v~g~------------------------------~r~---~--~g~~P~~~~~spDGk~lyV~n~~~~~~VsV  204 (426)
T 3c75_H          160 LPIADIELPDA------------------------------PRF---L--VGTYQWMNALTPDNKNLLFYQFSPAPAVGV  204 (426)
T ss_dssp             CEEEEEEETTC------------------------------CCC---C--BSCCGGGSEECTTSSEEEEEECSSSCEEEE
T ss_pred             cEEEEEECCCc------------------------------ccc---c--cCCCcceEEEcCCCCEEEEEecCCCCeEEE
Confidence            76654421000                              000   0  0001124579999999998874  578999


Q ss_pred             EEcCCCceeEEeeecCC-----CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcce-eEEEEecCC
Q psy13076        158 WDTVNKEHILKNEFHPI-----GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPI-NSCDFKPSR  231 (423)
Q Consensus       158 wd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~  231 (423)
                      .|..+.+..........     .+.-.-+.++++|+.+++..... .....   .+    ..+.....++ ....+.+++
T Consensus       205 ID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~-~v~~~---~~----~~~~v~~~p~~~~~~~~~dg  276 (426)
T 3c75_H          205 VDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADG-ETKVT---NT----EVFHTEDELLINHPAFSLRS  276 (426)
T ss_dssp             EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTT-CCEEE---EC----CCCSCTTSCBCSCCEECTTT
T ss_pred             EECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCC-cEEEE---ee----eeeccCCCceeeEeeecCCC
Confidence            99988776544332110     00011245556665544433111 11000   00    0111111111 234566766


Q ss_pred             CeeEEEEeCCCeEEEEcCCCceeee--ecc-------c---cccCeEEEEECCCCCEEEEEEe----------cCeEEEE
Q psy13076        232 PFRIITGSEDNTIAVFEGPPFKFKM--TKQ-------E---HSRFVQAVRYSPSGSHFASAGF----------DGKVFLY  289 (423)
Q Consensus       232 ~~~~~s~s~d~~i~~~~~~~~~~~~--~~~-------~---~~~~i~~l~~s~~g~~l~s~s~----------dg~i~vw  289 (423)
                      ...+ ..+..+.+.+.|........  ...       .   .......++++|+++.+..+..          ++.|.++
T Consensus       277 ~~~~-~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI  355 (426)
T 3c75_H          277 GRLV-WPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL  355 (426)
T ss_dssp             CEEE-EEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CEEE-EEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence            5433 34567888888864322111  000       0   0111223689999987766543          4579999


Q ss_pred             ECCCccceecccccccCCCeEEEEECCCCC-eEEEEe-CCCcEEEEecCCcceeeee
Q psy13076        290 DGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLTAS-GDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       290 d~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~i~~~  344 (423)
                      |..+.+.+.++...   ....+++|+|||+ +|+++. .+++|.++|..+++.++++
T Consensus       356 D~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          356 NAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            99999988887532   2478999999998 888877 5999999999999988775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.41  E-value=3.8e-10  Score=100.85  Aligned_cols=231  Identities=10%  Similarity=0.093  Sum_probs=150.3

Q ss_pred             CceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc
Q psy13076         48 KPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI  126 (423)
Q Consensus        48 ~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  126 (423)
                      .--.+..|+++ +.++++...++.|..||.+++....                                +.         
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------------------~~---------   51 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------------------VT---------   51 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------------------EE---------
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------------------Ee---------
Confidence            34457889985 5577788888999999987653210                                00         


Q ss_pred             ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeec--CCCCCeeEEEECCCCCeEEEEEcCC-------
Q psy13076        127 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH--PIGGPIKDIAWSPDNQRMVVVGEGR-------  197 (423)
Q Consensus       127 ~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~~~~~~~~~-------  197 (423)
                         ....+.+++++|+|+++++.  +..|.+||.++++........  .....+++++++|+|+..+......       
T Consensus        52 ---~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~  126 (297)
T 3g4e_A           52 ---MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLE  126 (297)
T ss_dssp             ---CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCC
T ss_pred             ---CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccccccc
Confidence               12357788999999966654  568999998766533221111  1123478899999999665443211       


Q ss_pred             ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC--CCcee-----eeeccccccCeEEEEE
Q psy13076        198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG--PPFKF-----KMTKQEHSRFVQAVRY  270 (423)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~--~~~~~-----~~~~~~~~~~i~~l~~  270 (423)
                      ...+.++..+.......+.......+.++|+|++..+.++.+.++.|..|+.  ....+     ..........+..+++
T Consensus       127 ~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~  206 (297)
T 3g4e_A          127 RHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI  206 (297)
T ss_dssp             TTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred             CCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence            1123455444332333333333456789999999876777778899999974  22221     1122223345788999


Q ss_pred             CCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEEC-CCCCeEEEEeC
Q psy13076        271 SPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK-PDGTQLLTASG  326 (423)
Q Consensus       271 s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~s~s~  326 (423)
                      +++|.+.++...++.|..||..+++.+..+..  +...+++++|. |+++.|..++.
T Consensus       207 d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          207 DAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             BTTSCEEEEEETTTEEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence            99998777777788899999988887776643  34578999998 88876655543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.41  E-value=4.6e-10  Score=100.83  Aligned_cols=238  Identities=12%  Similarity=0.107  Sum_probs=143.9

Q ss_pred             eEEEEEECCCCCEEEE-------EccCCcEEEEEcCCCceeEEee--ecCCCCCeeEEEECCC-CCeEEEEEcCCceeeE
Q psy13076        133 AVNVAKYSPSGFYIAS-------GDISGKVRIWDTVNKEHILKNE--FHPIGGPIKDIAWSPD-NQRMVVVGEGRERFGH  202 (423)
Q Consensus       133 ~i~~~~~sp~~~~l~s-------~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~-~~~~~~~~~~~~~~~~  202 (423)
                      ....++|++++.+.++       ...++.|.+||..+++......  .......+..++++++ +..++ +         
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~---------   88 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-A---------   88 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-E---------
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-E---------
Confidence            4568889999988887       5678899999976655321110  0001133556666665 33222 1         


Q ss_pred             EEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee-c----cccccCeEEEEECCCCCEE
Q psy13076        203 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT-K----QEHSRFVQAVRYSPSGSHF  277 (423)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~-~----~~~~~~i~~l~~s~~g~~l  277 (423)
                                                          ...+.|..|+.. .+.... .    ......+..++++|+|+++
T Consensus        89 ------------------------------------~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~  131 (314)
T 1pjx_A           89 ------------------------------------DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLW  131 (314)
T ss_dssp             ------------------------------------ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEE
T ss_pred             ------------------------------------ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEE
Confidence                                                112234444432 221111 0    0112347789999999887


Q ss_pred             EEEEec---------------CeEEEEECCCccceecccccccCCCeEEEEEC----CCCCeEE-EEeCCCcEEEEecC-
Q psy13076        278 ASAGFD---------------GKVFLYDGASADLVSELGNPAHKGGVYAVAWK----PDGTQLL-TASGDKTCKLWDIE-  336 (423)
Q Consensus       278 ~s~s~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~l~-s~s~d~~i~iwd~~-  336 (423)
                      ++...+               +.|..++.. ++.....   .+......++|+    |+++.|. +...++.|.+||+. 
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~---~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~  207 (314)
T 1pjx_A          132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG  207 (314)
T ss_dssp             EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEecCcccccccccccccCCCCeEEEECCC-CCEEEec---cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC
Confidence            776655               578888765 4432221   123456789999    9997554 44567899999986 


Q ss_pred             Ccceee--eeee-C-ce-eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCC-eEEEe
Q psy13076        337 TKSAVS--EFLM-G-NQ-VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTG  410 (423)
Q Consensus       337 ~~~~i~--~~~~-~-~~-~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~-~l~s~  410 (423)
                      +++...  .+.. . .. .....+...++|...++...++.|..||..+... +..+..+...+.+++|+|+++ ++++.
T Consensus       208 ~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          208 PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             CCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE-eEEEeCCCCCceeEEECCCCCEEEEEe
Confidence            333211  1111 0 00 1233355556788777777888999999874432 344556667899999999999 55666


Q ss_pred             cCCCcEEEeeCC
Q psy13076        411 SHDGFITRWNAK  422 (423)
Q Consensus       411 s~D~~i~~W~~~  422 (423)
                      ..++.|..|++.
T Consensus       287 ~~~~~l~~~~~~  298 (314)
T 1pjx_A          287 HENNAVWKFEWQ  298 (314)
T ss_dssp             TTTTEEEEEECS
T ss_pred             CCCCeEEEEeCC
Confidence            677889998865

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.39  E-value=4.7e-10  Score=104.21  Aligned_cols=281  Identities=14%  Similarity=0.151  Sum_probs=178.4

Q ss_pred             CCCCCeEEEecC------CeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc----------cCCcEEEEEcCC
Q psy13076         99 DPKGKNFLYTNG------NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVN  162 (423)
Q Consensus        99 ~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~----------~d~~i~vwd~~~  162 (423)
                      .+++..++..+.      +.+.+.|.++.+....+..-..+  .+.++|||++++.+.          .++.|.++|..+
T Consensus        81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            345554444432      58889999998887776533344  789999999888776          367899999988


Q ss_pred             CceeEEeeecC-----CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEE
Q psy13076        163 KEHILKNEFHP-----IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIIT  237 (423)
Q Consensus       163 ~~~~~~~~~~~-----~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s  237 (423)
                      .+.........     .......+.|+|||++++++.........+++..+.+.+..+.....    ....|.+...+++
T Consensus       159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~  234 (426)
T 3c75_H          159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYM  234 (426)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEE
T ss_pred             CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEE
Confidence            77654443320     01234578999999999988654334456667766666665543221    2334444444566


Q ss_pred             EeCCCeEEEEcCCCceeeee----ccccccC-eEEEEECCCCCEEEEEEecCeEEEEECCCccce--eccccc-------
Q psy13076        238 GSEDNTIAVFEGPPFKFKMT----KQEHSRF-VQAVRYSPSGSHFASAGFDGKVFLYDGASADLV--SELGNP-------  303 (423)
Q Consensus       238 ~s~d~~i~~~~~~~~~~~~~----~~~~~~~-i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~-------  303 (423)
                      .+.|+.+.+.+....+....    ......+ ...+.+.++++.++..+..+.+.+.|.......  ..+...       
T Consensus       235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~  314 (426)
T 3c75_H          235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERAD  314 (426)
T ss_dssp             EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred             EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccc
Confidence            66777766666533332211    1111111 123567899988777788899999998654321  111100       


Q ss_pred             -ccCCCeEEEEECCCCCeEEEEeC----------CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc-EEEEEe-CC
Q psy13076        304 -AHKGGVYAVAWKPDGTQLLTASG----------DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD-YLLTVS-LS  370 (423)
Q Consensus       304 -~~~~~i~~l~~~~~~~~l~s~s~----------d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~-~l~~~~-~~  370 (423)
                       ........++++|+++.|.....          +++|.+.|..+.+.+.++..+.  ....+.+.++|+ .+++.. .+
T Consensus       315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s  392 (426)
T 3c75_H          315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGT  392 (426)
T ss_dssp             TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTT
T ss_pred             ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCC
Confidence             00112223789999887666532          3579999999999988876543  345566778998 777777 58


Q ss_pred             CcEEEEecCCCCCceEEe
Q psy13076        371 GFISYLDVNNPSTPIRVI  388 (423)
Q Consensus       371 ~~i~~~~~~~~~~~~~~~  388 (423)
                      +.+.++|..+.+. ++.+
T Consensus       393 ~~VsVID~~t~kv-v~tI  409 (426)
T 3c75_H          393 QTLHIYDAATGEE-LRSV  409 (426)
T ss_dssp             TEEEEEETTTCCE-EEEE
T ss_pred             CeEEEEECCCCCE-EEEe
Confidence            9999999988643 4443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.39  E-value=4.5e-10  Score=104.95  Aligned_cols=254  Identities=9%  Similarity=0.038  Sum_probs=150.2

Q ss_pred             CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecC--C-eEEEEecCCCccc
Q psy13076         48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG--N-SVIIRNIENPAIS  124 (423)
Q Consensus        48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~i~~~~~~~~~  124 (423)
                      .....|+|++++.++++...++.|++||.+++.+.......  ..+. +.++++++.++....  . .+.+++..++...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            45779999999998888888899999999987665443321  2223 667888887666542  2 6777777655433


Q ss_pred             ccc----cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEee--ecCCCC--CeeEEEECCCCCeEEEEEcC
Q psy13076        125 DIY----TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE--FHPIGG--PIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       125 ~~~----~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~--~v~~v~~s~~~~~~~~~~~~  196 (423)
                      ..+    ..+...++.++++|++..|+.+..++.|..||..++.......  ......  |...++|+|++..+.++...
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            233    2244567789999955555557778899999987654322110  111111  11277788765555544322


Q ss_pred             CceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCE
Q psy13076        197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH  276 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~  276 (423)
                      .... ..+                       .+++....+.+...       ...+.--............++++|+|.+
T Consensus       288 ~~~I-~~~-----------------------~~~g~~~~~~g~~~-------~~g~~dg~~~~~~~~~P~gia~d~dG~l  336 (409)
T 3hrp_A          288 LSSV-YKI-----------------------TPDGECEWFCGSAT-------QKTVQDGLREEALFAQPNGMTVDEDGNF  336 (409)
T ss_dssp             TTEE-EEE-----------------------CTTCCEEEEEECTT-------CCSCBCEEGGGCBCSSEEEEEECTTCCE
T ss_pred             CCEE-EEE-----------------------ecCCCEEEEEeCCC-------CCCcCCCcccccEeCCCeEEEEeCCCCE
Confidence            2111 111                       11111111111100       0000000001112234688999999997


Q ss_pred             EEEEE-ecCeEEEEECCCccceecccc------------cccCCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076        277 FASAG-FDGKVFLYDGASADLVSELGN------------PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       277 l~s~s-~dg~i~vwd~~~~~~~~~~~~------------~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~  335 (423)
                      +++-+ .++.|+.|+..++........            .+.-....+++++|+|.++++-..++.|+.+++
T Consensus       337 yvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          337 YIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            77777 788999999776654321110            001245789999999988888888888887765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.37  E-value=9.8e-10  Score=102.66  Aligned_cols=254  Identities=11%  Similarity=0.025  Sum_probs=157.3

Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS  211 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      .....++|+|+++++++...++.|++||..++.......  . ..... ++|+|+++.++++..........+....+..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~--~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP--G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE--T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec--c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            467899999999988887778999999987655432211  1 22234 9999999988777654432334444444433


Q ss_pred             eecc----cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee----ccccccCe--EEEEECCC-CCEEEEE
Q psy13076        212 VGEI----SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT----KQEHSRFV--QAVRYSPS-GSHFASA  280 (423)
Q Consensus       212 ~~~~----~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~----~~~~~~~i--~~l~~s~~-g~~l~s~  280 (423)
                      ...+    ......+.+++++|.+.. ++.+..++.|+.|+.........    .......-  ..++|+|+ +.++++-
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            2222    214456788999995554 44466788899998654432221    11111111  28999995 5556666


Q ss_pred             EecCeEEEEECCCccceeccccc-------------ccCCCeEEEEECCCCCeEEEEe-CCCcEEEEecCCcceeeeeee
Q psy13076        281 GFDGKVFLYDGASADLVSELGNP-------------AHKGGVYAVAWKPDGTQLLTAS-GDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       281 s~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~i~~l~~~~~~~~l~s~s-~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      ..++.|+.|+....  ...+...             +.-....+++++|+|+++++-+ .++.|+.||+.++.. ..+..
T Consensus       286 ~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g  362 (409)
T 3hrp_A          286 QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAG  362 (409)
T ss_dssp             TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEE
T ss_pred             CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeC
Confidence            67889999986532  1111100             1123478999999999888887 889999999876642 22211


Q ss_pred             CceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        347 GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       347 ~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      ...                   ..+.      .++..    ....-.....++++|++.++++-..++.|+.++++
T Consensus       363 ~~~-------------------~~g~------~~g~~----~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          363 QVD-------------------VASQ------IDGTP----LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             CTT-------------------CBSC------CCBST----TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCC-------------------CCCc------CCCCh----hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            000                   0000      00000    01112457899999999888998999999888764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.31  E-value=2.6e-07  Score=94.11  Aligned_cols=391  Identities=9%  Similarity=0.015  Sum_probs=221.4

Q ss_pred             EEEEeCCEEEEEeccceEEEEeccCCCCceeecc-cc-cCc-eeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076         11 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GH-NKP-ITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus        11 ~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-gh-~~~-V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      +...+|.+.++ +. +.|..+|..+  ..+..+. ++ ... |.++...+++.+.+ |..++.|..|+.+++........
T Consensus       137 ~~d~~g~lwi~-t~-~gl~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~  211 (795)
T 4a2l_A          137 EEISPEQLLIS-TP-EGLIMFDIKE--SKFIDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPI  211 (795)
T ss_dssp             EEEETTEEEEE-ET-TEEEEEETTT--TEEECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC--
T ss_pred             EECCCCCEEEE-EC-CceEEEECCC--CEEEeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCC
Confidence            33445655554 44 4577888653  2222222 11 123 88899888887665 55555688899877654332211


Q ss_pred             CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccC-------CcceEEEEEECCCCCEEEEEccCCcEEEEEc
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE-------HSCAVNVAKYSPSGFYIASGDISGKVRIWDT  160 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~  160 (423)
                      ........+..+++|..++.+.++.+..++.+++........       ....|.++...++|.+.+.. .+ .|.+||.
T Consensus       212 ~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~  289 (795)
T 4a2l_A          212 LGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNIYHE  289 (795)
T ss_dssp             --CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEEEET
T ss_pred             CCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhheEcC
Confidence            112223345556677777777666788888776554433221       23579999999988866644 34 5888997


Q ss_pred             CCCceeEEeee-----cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc-------CCCcceeEEEEe
Q psy13076        161 VNKEHILKNEF-----HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS-------GQSKPINSCDFK  228 (423)
Q Consensus       161 ~~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~  228 (423)
                      .+.....-...     .-....|.++...++|...+.. ...+.  ..+...... ...+.       .....|.++...
T Consensus       290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt-~~~Gl--~~~~~~~~~-~~~~~~~~~~~~l~~~~V~~i~~d  365 (795)
T 4a2l_A          290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGT-YFGGL--NYYHPIRNR-FKNIRNIPYKNSLSDNVVSCIVED  365 (795)
T ss_dssp             TTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEE-SSSCE--EEECGGGGS-SEEECCCTTSSSCSCSSEEEEEEC
T ss_pred             CCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEE-CCCCe--EEeCCCccc-ceEEcCCCCCCCCCCCeeEEEEEC
Confidence            66543221110     0123568899999988755433 22221  222222211 11111       123457777777


Q ss_pred             cCCCeeEEEEeCCCeEEEEcCCCceeeeecc--------ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecc
Q psy13076        229 PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ--------EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL  300 (423)
Q Consensus       229 ~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~--------~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~  300 (423)
                      +++.  +..|+.++.+..|+.....+.....        .....|.++...++|..|..|+.++-|..+|..+++.....
T Consensus       366 ~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~  443 (795)
T 4a2l_A          366 KDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN  443 (795)
T ss_dssp             TTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC
T ss_pred             CCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee
Confidence            7665  6668888889999865443322111        12356889998889885777888778999998776532211


Q ss_pred             c--ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC---ce---eEeeEEEEEecCcEEEEEeCCCc
Q psy13076        301 G--NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG---NQ---VEDQQVSCLWQGDYLLTVSLSGF  372 (423)
Q Consensus       301 ~--~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~---~~---~~~~~~~~~~~g~~l~~~~~~~~  372 (423)
                      .  .......|.++..+++|++.+.. .+ -+.+||..+++.. .+...   ..   .....+....+|. +-.++. +.
T Consensus       444 ~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~-~G  518 (795)
T 4a2l_A          444 QRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE-EG  518 (795)
T ss_dssp             TTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES-SC
T ss_pred             cCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCC-EEEEeC-Cc
Confidence            1  01234578999999988866654 34 4888998776432 22111   00   1112222223444 334444 56


Q ss_pred             EEEEecCCCCCceEE-----eccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        373 ISYLDVNNPSTPIRV-----IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       373 i~~~~~~~~~~~~~~-----~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      +..++..+... ...     ..-....|.++...+++++.+++..  -+..||..
T Consensus       519 l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~  570 (795)
T 4a2l_A          519 LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEK  570 (795)
T ss_dssp             EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETT
T ss_pred             eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCC
Confidence            77787755322 100     0123457999999999987665443  46667654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.31  E-value=3.6e-10  Score=113.28  Aligned_cols=248  Identities=11%  Similarity=0.011  Sum_probs=147.9

Q ss_pred             ccccCceeEEEEeCCCCeEE-----EecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         44 KGHNKPITALALSPDRGTVF-----TGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        44 ~gh~~~V~~l~~~~~~~~l~-----sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      ++|...+..++||||+++||     +|+.+.+|++||+++++.+....                                
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--------------------------------  172 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--------------------------------  172 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--------------------------------
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--------------------------------
Confidence            35666888999999999887     45556789999999876432100                                


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCC-------------cEEEEEcCCCce--eEEeeecC-CCCCeeEEE
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG-------------KVRIWDTVNKEH--ILKNEFHP-IGGPIKDIA  182 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~-------------~i~vwd~~~~~~--~~~~~~~~-~~~~v~~v~  182 (423)
                               .+  .....+.|+ ||+.|+.++.+.             .|.+|++.+...  ........ ......++.
T Consensus       173 ---------~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~  240 (693)
T 3iuj_A          173 ---------KD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGAT  240 (693)
T ss_dssp             ---------EE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEE
T ss_pred             ---------CC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEE
Confidence                     00  001234577 777776666553             489999876542  11111111 123467899


Q ss_pred             ECCCCCeEEEEEcCCce--eeEEEeecCCc-ceecccCCCcceeEEEEecCCCeeEEEEeCC---CeEEEEcCCCcee--
Q psy13076        183 WSPDNQRMVVVGEGRER--FGHVFMSETGT-SVGEISGQSKPINSCDFKPSRPFRIITGSED---NTIAVFEGPPFKF--  254 (423)
Q Consensus       183 ~s~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d---~~i~~~~~~~~~~--  254 (423)
                      |+|||+++++.......  ...+++.+.+. ....+..+....... +++.+...++....+   ..|..++......  
T Consensus       241 ~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~  319 (693)
T 3iuj_A          241 VTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH  319 (693)
T ss_dssp             ECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG
T ss_pred             EcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc
Confidence            99999998776543322  22333333332 333444443333333 556666555555544   5688887654321  


Q ss_pred             eeeccccccCeEEEEECCCCCEEEEEEecC---eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC----
Q psy13076        255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDG---KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD----  327 (423)
Q Consensus       255 ~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d----  327 (423)
                      ...+..+...+.  .|++++++|+....++   .|++|+...+ ....+..+ ..+.+..+.++|+++.|+....+    
T Consensus       320 ~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP  395 (693)
T 3iuj_A          320 WRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQP  395 (693)
T ss_dssp             CEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSC
T ss_pred             cEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCC
Confidence            012233444443  8899999887776544   6889998744 33444322 34557778888888877665554    


Q ss_pred             CcEEEEecCCcce
Q psy13076        328 KTCKLWDIETKSA  340 (423)
Q Consensus       328 ~~i~iwd~~~~~~  340 (423)
                      +++..||+.+++.
T Consensus       396 ~~l~~~d~~~g~~  408 (693)
T 3iuj_A          396 PTLYRFEPKSGAI  408 (693)
T ss_dssp             CEEEEECTTTCCE
T ss_pred             CEEEEEECCCCeE
Confidence            7899999987653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.29  E-value=2.2e-09  Score=107.04  Aligned_cols=340  Identities=14%  Similarity=0.112  Sum_probs=176.2

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccC----------ce-eEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK----------PI-TALALSPDRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~----------~V-~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      +|+.|..++.++.|.-+|..++...- .+..+..          .+ ..+++  .+..|+.++.|+.|..+|.++++.+=
T Consensus        69 ~~g~vyv~~~~~~v~AlD~~tG~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W  145 (689)
T 1yiq_A           69 VDGVMYTTGPFSVVYALDARDGRLIW-KYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW  145 (689)
T ss_dssp             ETTEEEEECGGGCEEEEETTTCCEEE-EECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCeEEEEECCCCceeE-EEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence            47778888889999999987755433 3322111          11 11222  35678889999999999999998764


Q ss_pred             cccCC-CCCCceEEeeCC---CCCeEEEec------CCeEEEEecCCCcccccccC------------------------
Q psy13076         84 TLPRT-QRGQPIVLGGDP---KGKNFLYTN------GNSVIIRNIENPAISDIYTE------------------------  129 (423)
Q Consensus        84 ~~~~~-~~~~~~~~~~~~---~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~------------------------  129 (423)
                      ..... .......+...|   ++..++...      +..+..+|.++++....+..                        
T Consensus       146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  225 (689)
T 1yiq_A          146 SVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD  225 (689)
T ss_dssp             EEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred             eecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence            43321 100000011111   233333222      24677777777776654431                        


Q ss_pred             -------CcceEEEEEECCCCCEEEEEccCCc-------------------EEEEEcCCCceeEEeeecCCC-------C
Q psy13076        130 -------HSCAVNVAKYSPSGFYIASGDISGK-------------------VRIWDTVNKEHILKNEFHPIG-------G  176 (423)
Q Consensus       130 -------h~~~i~~~~~sp~~~~l~s~~~d~~-------------------i~vwd~~~~~~~~~~~~~~~~-------~  176 (423)
                             +...-..+.++|++..++.+..++.                   |..+|.++++..+..+...+.       .
T Consensus       226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~  305 (689)
T 1yiq_A          226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ  305 (689)
T ss_dssp             THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence                   0011124678888888888877763                   888898888877655432211       1


Q ss_pred             CeeEEEECCCCC--eEEEEEcCCceeeEEEeecCCcceecccCCC-cceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce
Q psy13076        177 PIKDIAWSPDNQ--RMVVVGEGRERFGHVFMSETGTSVGEISGQS-KPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK  253 (423)
Q Consensus       177 ~v~~v~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~  253 (423)
                      +........+|+  .+++.+ ......+.++..+++.+....... .....  +.+....-+....   ....|......
T Consensus       306 ~~~l~d~~~~G~~~~~v~~~-~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~--~~~~~~~pi~~~~---~~~~~~~~~~~  379 (689)
T 1yiq_A          306 HMILAELPIDGKPRKVLMQA-PKNGFFYVIDRATGELLSAKGIVPQSWTKG--MDMKTGRPILDEE---NAAYWKNGKRN  379 (689)
T ss_dssp             CEEEEEEEETTEEEEEEEEC-CTTSEEEEEETTTCCEEEEEESSCCSSEEE--EETTTTEEEECHH---HHCTTTSSSCE
T ss_pred             CcEEEeeccCCcEEEEEEEE-CCCCeEEEEECCCCCEeccccccccccccc--cCccCCCcccchh---hccccCCCCee
Confidence            111111111332  122222 222334445555555443222111 00000  0000000000000   00000000000


Q ss_pred             eeeeccccccCeEEEEECCCCCEEEEEEe---------------------------------------------cCeEEE
Q psy13076        254 FKMTKQEHSRFVQAVRYSPSGSHFASAGF---------------------------------------------DGKVFL  288 (423)
Q Consensus       254 ~~~~~~~~~~~i~~l~~s~~g~~l~s~s~---------------------------------------------dg~i~v  288 (423)
                      ...........-..++++|+..++++.+.                                             +|.|..
T Consensus       380 ~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A  459 (689)
T 1yiq_A          380 LVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIA  459 (689)
T ss_dssp             EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEE
T ss_pred             EeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEE
Confidence            00000000001123677777776665532                                             478999


Q ss_pred             EECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEE
Q psy13076        289 YDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLT  366 (423)
Q Consensus       289 wd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~  366 (423)
                      ||..+++...+...  + .....-.+...+.+++.++.|+.++.||.++++.+-++..........++...+|+..++
T Consensus       460 ~D~~tG~~~W~~~~--~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          460 WDPVKQQAAWEVPY--V-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             EETTTTEEEEEEEE--S-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EECCCCCeEeEccC--C-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            99999998766542  2 222333556678899999999999999999999998887665555555666668875443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.29  E-value=1e-10  Score=106.80  Aligned_cols=272  Identities=6%  Similarity=0.037  Sum_probs=158.8

Q ss_pred             eeEEEEeCCEEEEEec--cceEEEEeccCCCCceeec-------ccccCceeEEEEeCCCCeEEEecC-----CCceEEe
Q psy13076          9 QVSCLWQGDYLLTVSL--SGFISYLDVNNPSTPIRVI-------KGHNKPITALALSPDRGTVFTGSH-----DGFITRW   74 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~--dg~i~~~d~~~~~~~~~~~-------~gh~~~V~~l~~~~~~~~l~sg~~-----D~~i~vW   74 (423)
                      -|++++||+++++..+  +|.++||.+++ .+ +..+       .+|...+..++++++++++++-..     ++.|.+|
T Consensus        21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~   98 (343)
T 2qe8_A           21 NITLTPDGRLFLSLHQFYQPEMQVAELTQ-DG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAW   98 (343)
T ss_dssp             EEEECTTSCEEEEECGGGCCSCSEEEEET-TE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEE
T ss_pred             eEEECCCCCEEEEeCCCCCCceEEEEECC-CC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEE
Confidence            3667778999888653  34355555542 22 2222       246678999999999887776543     6889999


Q ss_pred             ecCCcceeecccCCC-----CCCceEEeeCCC-CCeEEEe----cCCeEEEEecCCCcccccccCCcceEE-EEEECCCC
Q psy13076         75 NAKTEYIFATLPRTQ-----RGQPIVLGGDPK-GKNFLYT----NGNSVIIRNIENPAISDIYTEHSCAVN-VAKYSPSG  143 (423)
Q Consensus        75 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~----~~~~~~i~~~~~~~~~~~~~~h~~~i~-~~~~sp~~  143 (423)
                      |.+++++...+....     ....--+..+++ +..++..    ....+.++++++++....+.+|..... ...+.++|
T Consensus        99 d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g  178 (343)
T 2qe8_A           99 DTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDG  178 (343)
T ss_dssp             ETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETT
T ss_pred             ECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECC
Confidence            999887655443211     111223445654 4444443    356889999988877666666532110 13345567


Q ss_pred             CEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCccee
Q psy13076        144 FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN  223 (423)
Q Consensus       144 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  223 (423)
                      ..+.+.+.+++++.|..                .+..++|+|+++.+.+......   .++..+...    +.       
T Consensus       179 ~~~~~~~~~g~~~~~~~----------------~~~gia~s~dg~~ly~~~~~~~---~l~~~~~~~----~~-------  228 (343)
T 2qe8_A          179 VPVQIGQPDGTVIRPHL----------------GVNGIVLDAENEWLYLSPMHST---SMYRIKSAD----LS-------  228 (343)
T ss_dssp             EECBEECTTSCEECCCC----------------CEEEEEECTTSCEEEEEESSCS---EEEEEEHHH----HT-------
T ss_pred             EEEEeccCCCceeceec----------------ccceeEeccCCCEEEEEeCCCC---eEEEEEHHH----hc-------
Confidence            77777777887766531                2467999999988776543322   122111000    00       


Q ss_pred             EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc
Q psy13076        224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP  303 (423)
Q Consensus       224 ~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  303 (423)
                            +..  +   + ++.  ++  ....    ...+......++++++|.++++...++.|.+||.++++...... .
T Consensus       229 ------~~~--~---~-~~~--~~--~~~~----~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~  287 (343)
T 2qe8_A          229 ------NLQ--L---T-DAE--LG--SKIE----RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-D  287 (343)
T ss_dssp             ------CTT--C---C-HHH--HH--TTCE----EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-C
T ss_pred             ------CCC--C---C-hhh--hh--cceE----ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-C
Confidence                  000  0   0 000  00  0000    00111234568999999999988889999999985565322221 1


Q ss_pred             ccCCCeEEEEECCCCCeEEEEeCCCcEEEE
Q psy13076        304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLW  333 (423)
Q Consensus       304 ~~~~~i~~l~~~~~~~~l~s~s~d~~i~iw  333 (423)
                      .+...+.+++|.++++++++.+..+.+.+|
T Consensus       288 ~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          288 EKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             GGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             CceecCCeeEECCCCcEEEEeCcccccccc
Confidence            234568899999999888887655544333

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.26  E-value=4.3e-09  Score=104.72  Aligned_cols=329  Identities=11%  Similarity=0.085  Sum_probs=176.3

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccC-----------ceeEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK-----------PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~-----------~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      .|+.|..++.++.|.-+|..++...- .++....           .-..+++  .+..|+.++.|+.|..+|.++++.+-
T Consensus        76 ~~g~vyv~~~~~~v~AlD~~tG~~~W-~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W  152 (677)
T 1kb0_A           76 VDGIMYVSASWSVVHAIDTRTGNRIW-TYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVW  152 (677)
T ss_dssp             ETTEEEEECGGGCEEEEETTTTEEEE-EECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEE-EEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            46777778888999999987654332 2221110           0112232  45678888999999999999998765


Q ss_pred             cccCC-C-------CCCceEEeeCCCCCeEEEec------CCeEEEEecCCCcccccccCCc------------------
Q psy13076         84 TLPRT-Q-------RGQPIVLGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEHS------------------  131 (423)
Q Consensus        84 ~~~~~-~-------~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~h~------------------  131 (423)
                      .+... .       ...+++.    ++..++...      +..+..+|.++++....+....                  
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v~----~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~  228 (677)
T 1kb0_A          153 HQNTFEGQKGSLTITGAPRVF----KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART  228 (677)
T ss_dssp             EEETTTTCCSSCBCCSCCEEE----TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             eecCCcCcCcCcccccCcEEE----CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence            54322 1       1111111    233333322      3567777777777665443211                  


Q ss_pred             --------------ceEEEEEECCCCCEEEEEccCC-------------------cEEEEEcCCCceeEEeeecCCC---
Q psy13076        132 --------------CAVNVAKYSPSGFYIASGDISG-------------------KVRIWDTVNKEHILKNEFHPIG---  175 (423)
Q Consensus       132 --------------~~i~~~~~sp~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~~~~---  175 (423)
                                    .....+.++|++..++.+..++                   .|..+|.++++..+..+...+.   
T Consensus       229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd  308 (677)
T 1kb0_A          229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD  308 (677)
T ss_dssp             SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred             ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence                          1113467888888888776654                   4788888877776654432211   


Q ss_pred             ----CCeeEEEECCCCC--eEEEEEcCCceeeEEEeecCCcceecccCCCcc-eeEEEEecCCCeeEEEEe---CCCeEE
Q psy13076        176 ----GPIKDIAWSPDNQ--RMVVVGEGRERFGHVFMSETGTSVGEISGQSKP-INSCDFKPSRPFRIITGS---EDNTIA  245 (423)
Q Consensus       176 ----~~v~~v~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~s~s---~d~~i~  245 (423)
                          .....+....+|+  .+++.+. .....++++..+++.+........+ ...++  ..+.. +....   ..+...
T Consensus       309 ~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d--~~g~~-~~~~~~~~~~~~~~  384 (677)
T 1kb0_A          309 YTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFISAKNFVPVNWASGYD--KHGKP-IGIAAARDGSKPQD  384 (677)
T ss_dssp             CCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEEEEEESSCCSSEEEEC--TTSCE-EECGGGGCTTSCEE
T ss_pred             cccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEeccccccccCcccccC--CCCce-eeccccCcCCCccE
Confidence                1111122222442  2222221 2223344455555544332211100 00000  00000 00000   000000


Q ss_pred             EEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe-------------------------------------------
Q psy13076        246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF-------------------------------------------  282 (423)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~-------------------------------------------  282 (423)
                      ++.        ...+... -..++++|++.++++...                                           
T Consensus       385 ~~P--------~~~G~~~-w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~  455 (677)
T 1kb0_A          385 AVP--------GPYGAHN-WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKP  455 (677)
T ss_dssp             CSS--------CTTCSSC-SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCC
T ss_pred             ECc--------CcccccC-CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCC
Confidence            000        0000001 124678888777766543                                           


Q ss_pred             cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc
Q psy13076        283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD  362 (423)
Q Consensus       283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~  362 (423)
                      .|.|..||..+++.+.+...   ...+.+..+..++..++.++.|+.+++||.++++.+.++..........+....+|+
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~  532 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCE
Confidence            27899999999998776642   233444556677888889999999999999999999988766655555566666886


Q ss_pred             EEEE
Q psy13076        363 YLLT  366 (423)
Q Consensus       363 ~l~~  366 (423)
                      .+++
T Consensus       533 ~~v~  536 (677)
T 1kb0_A          533 QYVS  536 (677)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.26  E-value=2.7e-09  Score=97.38  Aligned_cols=240  Identities=12%  Similarity=0.053  Sum_probs=139.4

Q ss_pred             CceeEEEEeCCCCeEEEec--CCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccc
Q psy13076         48 KPITALALSPDRGTVFTGS--HDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD  125 (423)
Q Consensus        48 ~~V~~l~~~~~~~~l~sg~--~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  125 (423)
                      ..+..++++++++++++..  .++.+++|.+.++++. .++..                              .     .
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~------------------------------~-----~   60 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQ------------------------------S-----G   60 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCC------------------------------C-----S
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCc------------------------------c-----c
Confidence            6788999999999988853  2344677766433221 11100                              0     0


Q ss_pred             cccCCcceEEEEEECCCCCEEEEEcc-----CCcEEEEEcCCCceeEEeeecC----CCCCeeEEEECCCCCeEEEEEcC
Q psy13076        126 IYTEHSCAVNVAKYSPSGFYIASGDI-----SGKVRIWDTVNKEHILKNEFHP----IGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       126 ~~~~h~~~i~~~~~sp~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                      ...+|...+..++++|++++.++-..     +..|.+||..+++......+..    .......++++|++..+.+...+
T Consensus        61 ~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           61 NAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             SCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             CcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence            11245667899999999876665433     5789999998776443333321    12346889999876655554331


Q ss_pred             --CceeeEEEeecCCcceecccCCCccee-EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCC
Q psy13076        197 --RERFGHVFMSETGTSVGEISGQSKPIN-SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS  273 (423)
Q Consensus       197 --~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  273 (423)
                        ......+++..+++....+..+..... ...+.+++. .+.+.+.++.+..|.              ..+..++++|+
T Consensus       141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~~~~--------------~~~~gia~s~d  205 (343)
T 2qe8_A          141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV-PVQIGQPDGTVIRPH--------------LGVNGIVLDAE  205 (343)
T ss_dssp             SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE-ECBEECTTSCEECCC--------------CCEEEEEECTT
T ss_pred             cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCE-EEEeccCCCceecee--------------cccceeEeccC
Confidence              222334555555555444433211100 022333332 233344555554432              13567999999


Q ss_pred             CCEEEEEEecC-eEEEEECC---Ccc-----ceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        274 GSHFASAGFDG-KVFLYDGA---SAD-----LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       274 g~~l~s~s~dg-~i~vwd~~---~~~-----~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      |+.|+.+..++ .+..++..   .+.     ....+...++.+....++++++|+++++...++.|.+||.+++
T Consensus       206 g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G  279 (343)
T 2qe8_A          206 NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR  279 (343)
T ss_dssp             SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred             CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence            99888877665 56555532   111     0111111123345567999999999999988999999998444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.26  E-value=1.4e-08  Score=91.86  Aligned_cols=227  Identities=12%  Similarity=0.067  Sum_probs=138.3

Q ss_pred             eeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccccc
Q psy13076         50 ITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT  128 (423)
Q Consensus        50 V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  128 (423)
                      .....|+|+ +.+++++..++.|..||.++++...                                +.           
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------------------~~-----------   87 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------------------HA-----------   87 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------------------EE-----------
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------------------EE-----------
Confidence            346678876 4456666677778888776543210                                00           


Q ss_pred             CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeec--CCCCCeeEEEECCCCCeEEEEEcCC--ceeeEEE
Q psy13076        129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH--PIGGPIKDIAWSPDNQRMVVVGEGR--ERFGHVF  204 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~~~~~~~~~--~~~~~~~  204 (423)
                       ....+.++.++|+|+++++.  +..|.+||..+++........  .....+.+++++|+|+..+......  .....++
T Consensus        88 -~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           88 -LPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             -CSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred             -CCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence             11357788899999887765  345899998766543211111  1123578999999998655433210  0112344


Q ss_pred             eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC--Cc-ee-----eeeccccccCeEEEEECCCCCE
Q psy13076        205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP--PF-KF-----KMTKQEHSRFVQAVRYSPSGSH  276 (423)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~--~~-~~-----~~~~~~~~~~i~~l~~s~~g~~  276 (423)
                      ..+.+ ....+.......+.++|+|++..+.++.+.++.|.+|+..  .. .+     ..........+..++++++|.+
T Consensus       165 ~~~~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l  243 (326)
T 2ghs_A          165 HVAKG-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI  243 (326)
T ss_dssp             EEETT-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred             EEeCC-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE
Confidence            33322 2222222223467889999998766666778899999853  22 21     1112222345678999999987


Q ss_pred             EEEEEecCeEEEEECCCccceecccccccCCCeEEEEEC-CCCCeEEEEeC
Q psy13076        277 FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK-PDGTQLLTASG  326 (423)
Q Consensus       277 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~s~s~  326 (423)
                      .++...++.|..|+. +++.+..+..  +...+.+++|+ |+++.|..++.
T Consensus       244 wva~~~~~~v~~~d~-~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          244 WNARWGEGAVDRYDT-DGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEETTTEEEEECT-TCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEEEeCCCEEEEECC-CCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEec
Confidence            776666789999997 5665555532  34568999998 88876655443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.24  E-value=3.2e-06  Score=86.10  Aligned_cols=388  Identities=9%  Similarity=0.036  Sum_probs=218.8

Q ss_pred             EEEeCCEEEEEeccceEEEEeccCCCCceeec--ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC-
Q psy13076         12 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI--KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT-   88 (423)
Q Consensus        12 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~-   88 (423)
                      ...+|.+.+ +..++.|..+|..+..  ...+  ..+...|.++...+++.+.+.. .++.+..||.+++......... 
T Consensus       180 ~d~~g~lwi-gt~~~Gl~~~~~~~~~--~~~~~~~~~~~~i~~i~~d~~g~lwigt-~~~Gl~~~~~~~~~~~~~~~~~~  255 (795)
T 4a2l_A          180 YRQGDQIYI-GTSTDGLYTYSITQKT--FEKVIPILGTKQIQAILQQSPTRIWVAT-EGAGLFLINPKTKEIKNYLHSPS  255 (795)
T ss_dssp             EEETTEEEE-EESSSCEEEEETTTCC--EEECC----CCCEEEEEEEETTEEEEEE-BSSCEEEEETTTTEEEEECCCTT
T ss_pred             ECCCCCEEE-EECCCCEEEEeCCCCe--EEEecCCCCCCeeEEEEEcCCCCEEEEE-CCCCeEEEeCCCCeEEEeecCCC
Confidence            334565555 5665568888875422  2222  2245678899888887766544 4445888998876543322110 


Q ss_pred             -----CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccccc-------CCcceEEEEEECCCCCEEEEEccCCcEE
Q psy13076         89 -----QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT-------EHSCAVNVAKYSPSGFYIASGDISGKVR  156 (423)
Q Consensus        89 -----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------~h~~~i~~~~~sp~~~~l~s~~~d~~i~  156 (423)
                           .......+..+++|...+.+.+ .+.+++.+++.......       -....|.++...++|.+-+ |..++.|.
T Consensus       256 ~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~  333 (795)
T 4a2l_A          256 NPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFGGLN  333 (795)
T ss_dssp             CTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSSCEE
T ss_pred             CccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCCCeE
Confidence                 1122334667788888887765 78888877665443321       1336799999999987554 55667788


Q ss_pred             EEEcCCCceeEEeee---cC-CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc---------CCCccee
Q psy13076        157 IWDTVNKEHILKNEF---HP-IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS---------GQSKPIN  223 (423)
Q Consensus       157 vwd~~~~~~~~~~~~---~~-~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~  223 (423)
                      .++..+.....-...   .. ....|.++...++|...+. +...+  ...+...++. ...+.         .....|.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG-t~~~G--l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~  409 (795)
T 4a2l_A          334 YYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIG-TNDGG--LNLYNPITQR-FTSYTLQEDESARGIGSNNIK  409 (795)
T ss_dssp             EECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEE-ESSSC--EEEECTTTCC-EEEECCC------CCSCSCEE
T ss_pred             EeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEE-ECCCC--eEEEcCCCCc-EEEEecCCCCcccCCCCccEE
Confidence            888654432111110   01 2356889998888875543 22222  1223332222 11111         1134577


Q ss_pred             EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecc----ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceec
Q psy13076        224 SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ----EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE  299 (423)
Q Consensus       224 ~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~----~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~  299 (423)
                      ++...+++.. +..|+.++.+..++....+......    .....|.++...++|.+.+.. . +-+..||..+++....
T Consensus       410 ~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~  486 (795)
T 4a2l_A          410 AVYVDEKKSL-VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTI  486 (795)
T ss_dssp             EEEEETTTTE-EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEEC
T ss_pred             EEEEcCCCCE-EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEc
Confidence            7777776652 5567777788999865444332211    223568899998888765544 4 4588899876543221


Q ss_pred             ccc----cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee---Cc---eeEeeEEEEEecCcEEEEEeC
Q psy13076        300 LGN----PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM---GN---QVEDQQVSCLWQGDYLLTVSL  369 (423)
Q Consensus       300 ~~~----~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~---~~---~~~~~~~~~~~~g~~l~~~~~  369 (423)
                      ...    ......|.++..+++|+..+...  +-+..||..+++.  .+..   ..   ......+....+|. +-.++.
T Consensus       487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~  561 (795)
T 4a2l_A          487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGI-IWVGTR  561 (795)
T ss_dssp             CBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSC-EEEEES
T ss_pred             cccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeC
Confidence            110    11235689999999998776554  4588899876654  2211   00   01112222223454 333444


Q ss_pred             CCcEEEEecCCCCCceEEec---cC-CCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        370 SGFISYLDVNNPSTPIRVIK---GH-NKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       370 ~~~i~~~~~~~~~~~~~~~~---~h-~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      . .+..||..+..  +..+.   +. ...|.++...+++++.+++.  +-+..|+++
T Consensus       562 ~-Gl~~~d~~~~~--~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--~Gl~~~~~~  613 (795)
T 4a2l_A          562 E-GFYCFNEKDKQ--IKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--RGISCFNPE  613 (795)
T ss_dssp             S-CEEEEETTTTE--EEEECGGGTCSCSCEEEEEECTTSCEEEEET--TEEEEEETT
T ss_pred             C-CceeECCCCCc--EEEeCCCCCCchhheEEEEECCCCCEEEEcC--CceEEEcCC
Confidence            4 67788865532  22221   21 34688999998888776653  345556654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.23  E-value=6.5e-10  Score=101.54  Aligned_cols=259  Identities=10%  Similarity=-0.002  Sum_probs=151.4

Q ss_pred             eEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec----------CCCceEEeecCCcceeecccCCCCCCceEE
Q psy13076         27 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS----------HDGFITRWNAKTEYIFATLPRTQRGQPIVL   96 (423)
Q Consensus        27 ~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~----------~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~   96 (423)
                      .|.++|..+ .+.+.++.--..|  .++++|++++|+.+.          .+++|.+||..+.+....+.....      
T Consensus        47 ~vsvID~~t-~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~------  117 (368)
T 1mda_H           47 ENWVSCAGC-GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA------  117 (368)
T ss_dssp             EEEEEETTT-TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS------
T ss_pred             eEEEEECCC-CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc------
Confidence            888999876 4556666544456  799999999888875          478999999999877665421100      


Q ss_pred             eeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc--CCcEEE--EEcCCCceeEEeeec
Q psy13076         97 GGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI--SGKVRI--WDTVNKEHILKNEFH  172 (423)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~--d~~i~v--wd~~~~~~~~~~~~~  172 (423)
                                              ++   ...+  .....+.|+|||++++.+..  +..+.+  +|..+   .......
T Consensus       118 ------------------------~~---~~~g--~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~  165 (368)
T 1mda_H          118 ------------------------PR---FSVG--PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA  165 (368)
T ss_dssp             ------------------------CS---CCBS--CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred             ------------------------cc---cccC--CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence                                    00   0000  01224679999999988875  356888  88765   1111110


Q ss_pred             CC-----CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC-----Ccce----ecccCCCcceeEEEEecCCCeeEEEE
Q psy13076        173 PI-----GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET-----GTSV----GEISGQSKPINSCDFKPSRPFRIITG  238 (423)
Q Consensus       173 ~~-----~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~i~~~~~~~~~~~~~~s~  238 (423)
                      ..     .+.-.-++++++++.+.+            ..+.     ++..    ..+.....+.   . .+.+.. ++..
T Consensus       166 ~~~~~~p~g~~~~~~~~~dg~~~~v------------d~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~-~~~v  228 (368)
T 1mda_H          166 SCFHIHPGAAATHYLGSCPASLAAS------------DLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGM-LVWA  228 (368)
T ss_dssp             SCCCCEEEETTEEECCCCTTSCEEE------------ECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTE-EEEC
T ss_pred             CceEEccCCCeEEEEEcCCCCEEEE------------ECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCE-EEEE
Confidence            00     000011333444443332            2221     1111    0111112232   2 444444 3333


Q ss_pred             eCCCeEEEEcCCCc--eeeeeccc----------cccCeEEEEECCCCCEEEEEEe---------cCeEEEEECCCccce
Q psy13076        239 SEDNTIAVFEGPPF--KFKMTKQE----------HSRFVQAVRYSPSGSHFASAGF---------DGKVFLYDGASADLV  297 (423)
Q Consensus       239 s~d~~i~~~~~~~~--~~~~~~~~----------~~~~i~~l~~s~~g~~l~s~s~---------dg~i~vwd~~~~~~~  297 (423)
                      +. +.+.+.|....  +.......          .......++++|+|+.+..+..         ++.+.++|..+.+.+
T Consensus       229 s~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv  307 (368)
T 1mda_H          229 VA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS  307 (368)
T ss_dssp             BS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE
T ss_pred             cC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE
Confidence            44 78888876432  22111100          0111222689999998776543         235669999999988


Q ss_pred             ecccccccCCCeEEEEECCCCC-eEEEEe-CCCcEEEEecCCcceeeeeeeC
Q psy13076        298 SELGNPAHKGGVYAVAWKPDGT-QLLTAS-GDKTCKLWDIETKSAVSEFLMG  347 (423)
Q Consensus       298 ~~~~~~~~~~~i~~l~~~~~~~-~l~s~s-~d~~i~iwd~~~~~~i~~~~~~  347 (423)
                      .++...   ....+++|+|||+ .+++.. .+++|.++|+.+++.+.+...+
T Consensus       308 ~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          308 GPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             ECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             EEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence            877532   2578999999997 566666 5999999999999988776543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.23  E-value=4.1e-10  Score=103.16  Aligned_cols=173  Identities=11%  Similarity=0.006  Sum_probs=119.0

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCC----------CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecC
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPS----------TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK   77 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~----------~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~   77 (423)
                      +.+++....+++++|+.++.+ +|++....          ++. ....+.+ |..|+|  ++.+|+++ .++.|++||+.
T Consensus        41 nlLais~~~gll~a~~~~~l~-v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           41 QNLDISNSKSLFVAASGSKAV-VGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             BCEEEETTTTEEEEEETTEEE-EEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred             cEEEEcCCCCEEEEeCCCEEE-EEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence            567888899999999998655 59864321          221 2234667 999999  88999998 88999999987


Q ss_pred             CcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEE
Q psy13076         78 TEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI  157 (423)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~v  157 (423)
                      +............. ...+...+. ..++...++.+.+|+++++....    +...|++++|+|+|  ++.|..||++++
T Consensus       115 sl~~~~~~~~~~~~-v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~  186 (388)
T 1xip_A          115 ELSEFRTVTSFEKP-VFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQS  186 (388)
T ss_dssp             STTCEEEEEECSSC-EEEEEECSS-EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred             hhhccCccceeecc-eeeEEecCC-CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence            64432222111111 112222222 25556778899999998776543    56789999999999  677889999999


Q ss_pred             EEcCCCceeEEeee------c---CCCCCeeEEEECCCCCeEEEEE
Q psy13076        158 WDTVNKEHILKNEF------H---PIGGPIKDIAWSPDNQRMVVVG  194 (423)
Q Consensus       158 wd~~~~~~~~~~~~------~---~~~~~v~~v~~s~~~~~~~~~~  194 (423)
                      |+....+...+..+      .   .+...|.+|.|.+++.++++-.
T Consensus       187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            98776553111222      1   2356799999999998887654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.21  E-value=4.3e-09  Score=105.42  Aligned_cols=250  Identities=10%  Similarity=0.166  Sum_probs=148.0

Q ss_pred             CCcceEEEEEECCCCCEEEE-----EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEE
Q psy13076        129 EHSCAVNVAKYSPSGFYIAS-----GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHV  203 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~s-----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~  203 (423)
                      +|...+..+.|||||+++|-     |+.+.+|++||+++++.... ....  .....++|+ |++.++.+......    
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~----  197 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD--VKFSGISWL-GNEGFFYSSYDKPD----  197 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE--EESCCCEEE-TTTEEEEEESSCCC----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC--ceeccEEEe-CCCEEEEEEecCcc----
Confidence            46678999999999999983     33346899999998875432 2211  112467899 99988876543210    


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc----eeeeeccc-cccCeEEEEECCCCCEEE
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF----KFKMTKQE-HSRFVQAVRYSPSGSHFA  278 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~----~~~~~~~~-~~~~i~~l~~s~~g~~l~  278 (423)
                           +.   .                    +-.......|++|+....    ........ +......+.|+|||++|+
T Consensus       198 -----~~---~--------------------~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~  249 (693)
T 3iuj_A          198 -----GS---E--------------------LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLL  249 (693)
T ss_dssp             -----------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred             -----cc---c--------------------ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEE
Confidence                 00   0                    000112334566654321    12222223 445577899999999886


Q ss_pred             EEEe----cCeEEEEECCCcc-ceecccccccCCCeEEEEECCCCCeEEEEe-CC---CcEEEEecCCcce--eeeeeeC
Q psy13076        279 SAGF----DGKVFLYDGASAD-LVSELGNPAHKGGVYAVAWKPDGTQLLTAS-GD---KTCKLWDIETKSA--VSEFLMG  347 (423)
Q Consensus       279 s~s~----dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s-~d---~~i~iwd~~~~~~--i~~~~~~  347 (423)
                      ....    ++.|+++|+.++. ....+.  .+....... |+++|..|+..+ .+   +.|..+|+.++..  ...+...
T Consensus       250 ~~~~~~~~~~~i~~~d~~~~~~~~~~l~--~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~  326 (693)
T 3iuj_A          250 ISAANSTSGNRLYVKDLSQENAPLLTVQ--GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE  326 (693)
T ss_dssp             EEEESSSSCCEEEEEETTSTTCCCEEEE--CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred             EEEccCCCCcEEEEEECCCCCCceEEEe--CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence            5543    2489999987764 233332  234444444 666666554443 33   5788999987643  2333322


Q ss_pred             ceeEeeEEEEEecCcEEEEEeC-CC--cEEEEecCCCCCceEEec-cCCCceeEEEecCCCCeEEEecCC----CcEEEe
Q psy13076        348 NQVEDQQVSCLWQGDYLLTVSL-SG--FISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTVFTGSHD----GFITRW  419 (423)
Q Consensus       348 ~~~~~~~~~~~~~g~~l~~~~~-~~--~i~~~~~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~l~s~s~D----~~i~~W  419 (423)
                      ...  .. .+.++++.|+.... ++  .|++|+....  ....+. .+...+..++++|+++.|+....+    +++..|
T Consensus       327 ~~~--~~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~--~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~  401 (693)
T 3iuj_A          327 RQQ--VL-TVHSGSGYLFAEYMVDATARVEQFDYEGK--RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRF  401 (693)
T ss_dssp             CSS--CE-EEEEETTEEEEEEEETTEEEEEEECTTSC--EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEE
T ss_pred             CCC--EE-EEEEECCEEEEEEEECCeeEEEEEECCCC--eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEE
Confidence            211  12 66678888876654 44  5788887642  223332 344568888899998877654433    788888


Q ss_pred             eCC
Q psy13076        420 NAK  422 (423)
Q Consensus       420 ~~~  422 (423)
                      |++
T Consensus       402 d~~  404 (693)
T 3iuj_A          402 EPK  404 (693)
T ss_dssp             CTT
T ss_pred             ECC
Confidence            865

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.20  E-value=3.4e-08  Score=88.09  Aligned_cols=200  Identities=11%  Similarity=0.086  Sum_probs=122.3

Q ss_pred             EEEEECCC-CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee
Q psy13076        135 NVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG  213 (423)
Q Consensus       135 ~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (423)
                      -+..|+|+ +..+.+...++.|..||..+++.. ..   .....+..++++|+|+.++. . ..  -...++.+++....
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~---~~~~~~~~i~~~~dG~l~v~-~-~~--~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV---TMDAPVSSVALRQSGGYVAT-I-GT--KFCALNWKEQSAVV   87 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE---ECSSCEEEEEEBTTSSEEEE-E-TT--EEEEEETTTTEEEE
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE---eCCCceEEEEECCCCCEEEE-E-CC--eEEEEECCCCcEEE
Confidence            35678885 455566667899999998766532 11   12467899999999994443 3 22  22344444443221


Q ss_pred             --ccc--CCCcceeEEEEecCCCeeEEEEeC----------CCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEE-E
Q psy13076        214 --EIS--GQSKPINSCDFKPSRPFRIITGSE----------DNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF-A  278 (423)
Q Consensus       214 --~~~--~~~~~i~~~~~~~~~~~~~~s~s~----------d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~  278 (423)
                        ...  .....++.+.++|++.+.+.+...          .+.+..++.. .+... ........+.++|+|+|+.+ +
T Consensus        88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred             EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEE
Confidence              111  123457889999998753333221          2345555532 22211 12223446789999999866 4


Q ss_pred             EEEecCeEEEEEC--CCcccee--cc-cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeee
Q psy13076        279 SAGFDGKVFLYDG--ASADLVS--EL-GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       279 s~s~dg~i~vwd~--~~~~~~~--~~-~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~  344 (423)
                      +.+.++.|..|+.  .++....  .+ ....+.+.+.+++++++|++.++....+.|..||..+++.+..+
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV  236 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence            5556789999986  4444211  11 11123356789999999998888888888999998877655443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.20  E-value=9.1e-08  Score=88.30  Aligned_cols=307  Identities=9%  Similarity=0.080  Sum_probs=174.7

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccc---------cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH---------NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh---------~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      +++.+..++.+|.|..+|..++.... .+.-.         ...+.+ ....++..++.++.|+.|..+|.++++.+-..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIW-SVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEE-EEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceee-eecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            67888888999999999987654332 22211         122322 22224567888889999999999998765443


Q ss_pred             cCCC--CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceE-----EEEEECCCCCEEEEEccCCcEEEE
Q psy13076         86 PRTQ--RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV-----NVAKYSPSGFYIASGDISGKVRIW  158 (423)
Q Consensus        86 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i-----~~~~~sp~~~~l~s~~~d~~i~vw  158 (423)
                      ....  ...++. .   ++..++.+.+..+..++.++++....+.......     .....  .+..++.+..++.+..+
T Consensus       130 ~~~~~~~~~p~~-~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          130 KVAGEALSRPVV-S---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAV  203 (376)
T ss_dssp             ECSSCCCSCCEE-E---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEE
T ss_pred             eCCCceEcCCEE-E---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEE
Confidence            2211  111211 1   3444555556678888888887766554322111     11111  14467778888999999


Q ss_pred             EcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEE
Q psy13076        159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG  238 (423)
Q Consensus       159 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~  238 (423)
                      |..+++..+.......... ..+      .             .+..           ....++    +.  +. .++.+
T Consensus       204 d~~tG~~~w~~~~~~~~~~-~~~------~-------------~~~~-----------~~~~p~----~~--~~-~v~~~  245 (376)
T 3q7m_A          204 LMEQGQMIWQQRISQATGS-TEI------D-------------RLSD-----------VDTTPV----VV--NG-VVFAL  245 (376)
T ss_dssp             ETTTCCEEEEEECCC-------------------------------C-----------CCCCCE----EE--TT-EEEEE
T ss_pred             ECCCCcEEEEEecccCCCC-ccc------c-------------cccc-----------cCCCcE----EE--CC-EEEEE
Confidence            9988776654432210000 000      0             0000           000000    00  11 25556


Q ss_pred             eCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCC
Q psy13076        239 SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDG  318 (423)
Q Consensus       239 s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~  318 (423)
                      +.++.+..++....+.......  .....+..  ++..+..++.++.+..+|..+++........ ..........  .+
T Consensus       246 ~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~--~~  318 (376)
T 3q7m_A          246 AYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-LHRLLTSPVL--YN  318 (376)
T ss_dssp             CTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT-TTSCCCCCEE--ET
T ss_pred             ecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-CCCcccCCEE--EC
Confidence            6677788887665554443321  12233333  3567888888999999999999876554311 1112222222  24


Q ss_pred             CeEEEEeCCCcEEEEecCCcceeeeeeeC-ceeEeeEEEEEecCcEEEEEeCCCcEEEEe
Q psy13076        319 TQLLTASGDKTCKLWDIETKSAVSEFLMG-NQVEDQQVSCLWQGDYLLTVSLSGFISYLD  377 (423)
Q Consensus       319 ~~l~s~s~d~~i~iwd~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~  377 (423)
                      ..|+.++.++.+..+|..+++.+..+... ....   ......+..|..++.+|.++.|+
T Consensus       319 ~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~---~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          319 GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQ---TEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCTTCBC---SCCEEETTEEEEEBTTSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEecCCCcce---eCCEEECCEEEEEeCCCEEEEEe
Confidence            57888888999999999999887665432 1111   11122467788888899888875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.18  E-value=1.4e-08  Score=90.84  Aligned_cols=241  Identities=10%  Similarity=0.065  Sum_probs=144.7

Q ss_pred             CceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEE
Q psy13076         38 TPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR  116 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  116 (423)
                      ..+..+...........|+|+++ +++++..++.|..|+.. +...                                  
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~----------------------------------   79 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD----------------------------------   79 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE----------------------------------
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE----------------------------------
Confidence            34445555556678899999988 77888888999999863 2210                                  


Q ss_pred             ecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee-EEeeecC-CCCCeeEEEECCCCCeEEEE-
Q psy13076        117 NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI-LKNEFHP-IGGPIKDIAWSPDNQRMVVV-  193 (423)
Q Consensus       117 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~-~~~~v~~v~~s~~~~~~~~~-  193 (423)
                               .+..+...+..+.++|+|+++++...++.|.+|+.. ++.. ....... ....+.+++++|+|...++- 
T Consensus        80 ---------~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~  149 (305)
T 3dr2_A           80 ---------VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDP  149 (305)
T ss_dssp             ---------EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECC
T ss_pred             ---------EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCc
Confidence                     011123356788999999977776667889999875 3321 1111111 11346789999999866642 


Q ss_pred             --EcCC----------ceeeEEEeec--CCcceecccCCCcceeEEEEecCCCeeEEEEeC-----CCeEEEEcCCCcee
Q psy13076        194 --GEGR----------ERFGHVFMSE--TGTSVGEISGQSKPINSCDFKPSRPFRIITGSE-----DNTIAVFEGPPFKF  254 (423)
Q Consensus       194 --~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~-----d~~i~~~~~~~~~~  254 (423)
                        +...          .....++..+  ++.. ..+. .....+.++|+|++..+.++.+.     ++.|..|+.....+
T Consensus       150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l  227 (305)
T 3dr2_A          150 PFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL  227 (305)
T ss_dssp             SGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE
T ss_pred             CCCccccccccccccccCCCeEEEEcCCCCcE-EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc
Confidence              1100          0012344333  3332 2222 33456789999998864444443     27898887543221


Q ss_pred             e--eec-cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEE
Q psy13076        255 K--MTK-QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCK  331 (423)
Q Consensus       255 ~--~~~-~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~  331 (423)
                      .  ... .........++++++|++.++ +.+ .|.+|+. +++.+..+..+  . .+.+++|+|+++.|..++.++..+
T Consensus       228 ~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~--~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          228 HDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTP--G-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             EEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECS--S-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             cCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECC--C-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            1  111 111233456889999985544 444 4999997 56665555432  2 478899999998888877765333

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.17  E-value=1.3e-09  Score=99.94  Aligned_cols=172  Identities=10%  Similarity=0.082  Sum_probs=120.1

Q ss_pred             ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce---------eee-eccccccCeEEEEECCCCCEEEEEEecCeEEEEE
Q psy13076        221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK---------FKM-TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD  290 (423)
Q Consensus       221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~---------~~~-~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd  290 (423)
                      +++.+++++.... +++|+.+ .+.+|+.....         ... ....+.. |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gl-l~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSL-FVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTE-EEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCE-EEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            5788889988875 6667766 55558632211         111 1223556 999999  99999998 889999999


Q ss_pred             CCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCC
Q psy13076        291 GASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS  370 (423)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~  370 (423)
                      ..+......+  ..|...+.++.+.+.  .+++++.||++.+||++++.... .  .  .....++.+++|  ++.|..+
T Consensus       113 v~sl~~~~~~--~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~--~--~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          113 LEELSEFRTV--TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L--A--QNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             SSSTTCEEEE--EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E--E--ESEEEEEECSSE--EEEEETT
T ss_pred             chhhhccCcc--ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c--c--CCceEEEEcCCc--eEEEEcC
Confidence            8876544333  346677888877654  38889999999999999876543 1  1  122233334455  7889999


Q ss_pred             CcEEEEecCCCCCc-eEEe------c---cCCCceeEEEecCCCCeEEE
Q psy13076        371 GFISYLDVNNPSTP-IRVI------K---GHNKPITALALSPDRGTVFT  409 (423)
Q Consensus       371 ~~i~~~~~~~~~~~-~~~~------~---~h~~~v~~i~~sp~~~~l~s  409 (423)
                      |.++.|+....+.. .+.+      .   +|...|.+|.|.+++.++++
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            99999977654321 2333      2   48889999999999999886

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.13  E-value=9e-08  Score=86.54  Aligned_cols=222  Identities=12%  Similarity=0.098  Sum_probs=128.1

Q ss_pred             EEEEEECCCC-CEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce
Q psy13076        134 VNVAKYSPSG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV  212 (423)
Q Consensus       134 i~~~~~sp~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (423)
                      .....|+|++ .++.+...++.|..||..+++... ..   ....+.+++|+|+|+.+++.  .                
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~---~~~~v~~i~~~~dg~l~v~~--~----------------  108 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA---LPFMGSALAKISDSKQLIAS--D----------------  108 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE---CSSCEEEEEEEETTEEEEEE--T----------------
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE---CCCcceEEEEeCCCeEEEEE--C----------------
Confidence            3466789974 455666678899999987654321 11   13457777777777654432  1                


Q ss_pred             ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee--cc--ccccCeEEEEECCCCCEEEEEEe------
Q psy13076        213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT--KQ--EHSRFVQAVRYSPSGSHFASAGF------  282 (423)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~--~~--~~~~~i~~l~~s~~g~~l~s~s~------  282 (423)
                                                   +.|.+|+....+....  ..  .....+..++++|+|+++++...      
T Consensus       109 -----------------------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~  159 (326)
T 2ghs_A          109 -----------------------------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETG  159 (326)
T ss_dssp             -----------------------------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTT
T ss_pred             -----------------------------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCC
Confidence                                         1122232211111100  00  11234778999999997665443      


Q ss_pred             cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEE-EEeCCCcEEEEecC--Cc-cee--eeeee-C-ceeEeeE
Q psy13076        283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDIE--TK-SAV--SEFLM-G-NQVEDQQ  354 (423)
Q Consensus       283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-s~s~d~~i~iwd~~--~~-~~i--~~~~~-~-~~~~~~~  354 (423)
                      .+.|..++  +++. ..+.  .+......++|+|+++.|. +.+.++.|.+||+.  ++ +..  ..+.. . .......
T Consensus       160 ~~~l~~~~--~g~~-~~~~--~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~g  234 (326)
T 2ghs_A          160 AGSIYHVA--KGKV-TKLF--ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG  234 (326)
T ss_dssp             CEEEEEEE--TTEE-EEEE--EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred             ceEEEEEe--CCcE-EEee--CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCe
Confidence            24666666  3432 2221  1234567899999998664 44557899999985  44 321  11111 0 1112223


Q ss_pred             EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEec-CCCCeE-EEecCC
Q psy13076        355 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALS-PDRGTV-FTGSHD  413 (423)
Q Consensus       355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~s-p~~~~l-~s~s~D  413 (423)
                      +....+|...++...++.|..|+..  ...+..+..+...+++++|+ |+++.| ++...+
T Consensus       235 i~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          235 SVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             eEECCCCCEEEEEeCCCEEEEECCC--CCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            4445577766666667889999873  23445566666789999998 888766 444444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.13  E-value=3.6e-08  Score=88.26  Aligned_cols=148  Identities=11%  Similarity=0.012  Sum_probs=98.2

Q ss_pred             eEEEEeCC-EEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076         10 VSCLWQGD-YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus        10 ~~~~~~~~-~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      .+.++||+ ++++...++.|..|+..  .+ ...+..+...+..++++++++++++...++.|.+|+.+ +.........
T Consensus        50 p~~~~~g~~l~~~d~~~~~i~~~~~~--g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~  125 (305)
T 3dr2_A           50 PAWWEAQRTLVWSDLVGRRVLGWRED--GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRY  125 (305)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEETT--SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEeCC--CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEecc
Confidence            44556788 56666778999999873  22 45666667789999999999977776677899999986 4332111110


Q ss_pred             ---CCCCceEEeeCCCCCeEEEe----c--------------CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE
Q psy13076         89 ---QRGQPIVLGGDPKGKNFLYT----N--------------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA  147 (423)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~~~----~--------------~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~  147 (423)
                         ....+-.+..+++|+.++..    .              ...+..++.++++.....  .....+.++|+||++.|+
T Consensus       126 ~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~ly  203 (305)
T 3dr2_A          126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLY  203 (305)
T ss_dssp             TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEE
T ss_pred             CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEE
Confidence               01112235667888877741    1              235666676666655443  334567899999999887


Q ss_pred             EEccC------CcEEEEEcCCC
Q psy13076        148 SGDIS------GKVRIWDTVNK  163 (423)
Q Consensus       148 s~~~d------~~i~vwd~~~~  163 (423)
                      .++..      +.|.+|++...
T Consensus       204 v~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          204 VSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             EEECCC---CCCEEEEEEEETT
T ss_pred             EEecCCcCCCCCEEEEEEecCC
Confidence            77665      68888887644

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.13  E-value=8.7e-09  Score=94.08  Aligned_cols=273  Identities=11%  Similarity=0.019  Sum_probs=164.8

Q ss_pred             eEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc----------cCCcEEEEEcCCCceeEEeeecCC-----CC
Q psy13076        112 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVNKEHILKNEFHPI-----GG  176 (423)
Q Consensus       112 ~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~-----~~  176 (423)
                      .+.+.|.++.+....+..-..+  .+.++||+++++.+.          .+++|.+||..+.+..........     ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            6778888888887777543345  699999999998886          368899999998877655443210     12


Q ss_pred             CeeEEEECCCCCeEEEEEcCCceeeEE--EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC---
Q psy13076        177 PIKDIAWSPDNQRMVVVGEGRERFGHV--FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP---  251 (423)
Q Consensus       177 ~v~~v~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~---  251 (423)
                      ....++|+|||++++++.........+  ++..+   +..+....    +..+.|.+...+++.+.|+.+.+.+...   
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~----~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~  197 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS----CFHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS----CCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC----ceEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence            346799999999999886543222333  33322   33332110    1123444444455666777777777554   


Q ss_pred             --ceeeee----ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc--ceeccccc-----c---cCCCeEEEEEC
Q psy13076        252 --FKFKMT----KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELGNP-----A---HKGGVYAVAWK  315 (423)
Q Consensus       252 --~~~~~~----~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~-----~---~~~~i~~l~~~  315 (423)
                        .+....    ......+.   + .+++..++..+. +.+.+.|..+..  ....+...     .   .......++++
T Consensus       198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s  272 (368)
T 1mda_H          198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL  272 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred             cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence              222210    11111222   3 566666666666 999999986532  22222110     0   01111227899


Q ss_pred             CCCCeEEEEeC---------CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEE-EEEe-CCCcEEEEecCCCCCc
Q psy13076        316 PDGTQLLTASG---------DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL-LTVS-LSGFISYLDVNNPSTP  384 (423)
Q Consensus       316 ~~~~~l~s~s~---------d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l-~~~~-~~~~i~~~~~~~~~~~  384 (423)
                      |+++.|..+..         +..+.++|+.+.+.+.++..+.  ....+.+.++|+.+ ++.. .++.+.++|..+.+ .
T Consensus       273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k-v  349 (368)
T 1mda_H          273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ-D  349 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE-E
T ss_pred             CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc-E
Confidence            99988776533         2356699999999888775443  34556677889854 5555 58999999998853 3


Q ss_pred             eEEeccCCCceeEEEecC
Q psy13076        385 IRVIKGHNKPITALALSP  402 (423)
Q Consensus       385 ~~~~~~h~~~v~~i~~sp  402 (423)
                      ++.+... +.-+.+++.+
T Consensus       350 v~~I~vg-~~P~~i~~~~  366 (368)
T 1mda_H          350 QSSVELD-KGPESLSVQN  366 (368)
T ss_dssp             EEECCCC-SCCCEEECCC
T ss_pred             EEEEECC-CCCCEEEeec
Confidence            4555433 3345666554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.13  E-value=2.8e-08  Score=99.12  Aligned_cols=261  Identities=14%  Similarity=0.163  Sum_probs=152.8

Q ss_pred             CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECC---CCCeEEEEEcC----CceeeEEEeecCCcceecc
Q psy13076        143 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP---DNQRMVVVGEG----RERFGHVFMSETGTSVGEI  215 (423)
Q Consensus       143 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  215 (423)
                      +..++.++.|+.|..+|.++++.++.............+..+|   ++. +++....    .......++..+++.+...
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            5578888889999999999998877655420000000111112   333 3332211    1233445555666655433


Q ss_pred             cCC-------------------------------CcceeEEEEecCCCeeEEEEeCCC-------------------eEE
Q psy13076        216 SGQ-------------------------------SKPINSCDFKPSRPFRIITGSEDN-------------------TIA  245 (423)
Q Consensus       216 ~~~-------------------------------~~~i~~~~~~~~~~~~~~s~s~d~-------------------~i~  245 (423)
                      ...                               ...-....++|.... ++.++.++                   .|.
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNL-LYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            210                               001124677776664 56666665                   388


Q ss_pred             EEcCCCceeeeeccc--cc-------cCeEEEEECCCCC---EEEEEEecCeEEEEECCCccceecccccc---------
Q psy13076        246 VFEGPPFKFKMTKQE--HS-------RFVQAVRYSPSGS---HFASAGFDGKVFLYDGASADLVSELGNPA---------  304 (423)
Q Consensus       246 ~~~~~~~~~~~~~~~--~~-------~~i~~l~~s~~g~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------  304 (423)
                      .+|..+.+.....+.  |.       ..........+|+   .++.++.+|.++++|..+++.+.......         
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~  358 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM  358 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence            898877776665443  21       1122222233565   78889999999999999998763221100         


Q ss_pred             -----------------cC---------C--CeEEEEECCCCCeEEEEeC------------------------------
Q psy13076        305 -----------------HK---------G--GVYAVAWKPDGTQLLTASG------------------------------  326 (423)
Q Consensus       305 -----------------~~---------~--~i~~l~~~~~~~~l~s~s~------------------------------  326 (423)
                                       ..         +  .-..++++|+..++.+...                              
T Consensus       359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  438 (689)
T 1yiq_A          359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM  438 (689)
T ss_dssp             TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred             cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence                             00         0  0013788888877776532                              


Q ss_pred             ---------------CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEec-c
Q psy13076        327 ---------------DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-G  390 (423)
Q Consensus       327 ---------------d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~  390 (423)
                                     +++|+.||+.+++.+-++........  -.+...|..+..++.++.++.||..+++. +..++ +
T Consensus       439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~--g~~~tagglvf~gt~dg~l~a~D~~tG~~-lw~~~~~  515 (689)
T 1yiq_A          439 MPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG--GTLSTAGNLVFEGSADGRVIAYAADTGEK-LWEQPAA  515 (689)
T ss_dssp             CCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC--CEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECS
T ss_pred             cCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC--ccceECCCEEEEECCCCcEEEEECCCCcc-ceeeeCC
Confidence                           37799999999987766554432211  12334778888899999999999999754 34443 3


Q ss_pred             CCCceeEEEecCCCCeEE
Q psy13076        391 HNKPITALALSPDRGTVF  408 (423)
Q Consensus       391 h~~~v~~i~~sp~~~~l~  408 (423)
                      +...-.-+.|+.+|+.++
T Consensus       516 ~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          516 SGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             SCCCSCCEEEEETTEEEE
T ss_pred             CCcccCceEEEECCEEEE
Confidence            322234577788888543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.11  E-value=2.7e-07  Score=85.07  Aligned_cols=307  Identities=10%  Similarity=0.110  Sum_probs=171.5

Q ss_pred             CCCeEEEecCCCceEEeecCCcceeecccCCCC-------CCceEEe-eCCCCCeEEEecCCeEEEEecCCCcccccccC
Q psy13076         58 DRGTVFTGSHDGFITRWNAKTEYIFATLPRTQR-------GQPIVLG-GDPKGKNFLYTNGNSVIIRNIENPAISDIYTE  129 (423)
Q Consensus        58 ~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  129 (423)
                      .+..|+.++.++.|..+|.++++.+-.......       ....... ...++..++.+.+..+..++.++++....+..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            356788888899999999998876543322110       1111111 11245555556667888889888877655543


Q ss_pred             CcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC
Q psy13076        130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG  209 (423)
Q Consensus       130 h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~  209 (423)
                      ..........  .+..++.++.++.|..+|.++++..+......   ++..  ......                     
T Consensus       132 ~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~---~~~~--~~~~~~---------------------  183 (376)
T 3q7m_A          132 AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDM---PSLS--LRGESA---------------------  183 (376)
T ss_dssp             SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC----------CCCCC---------------------
T ss_pred             CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC---Ccee--ecCCCC---------------------
Confidence            3211111111  24467778889999999998887765543221   1100  000000                     


Q ss_pred             cceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc-------CeEEEEECC--CCCEEEEE
Q psy13076        210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR-------FVQAVRYSP--SGSHFASA  280 (423)
Q Consensus       210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~-------~i~~l~~s~--~g~~l~s~  280 (423)
                                 ++    .. . . .++.+..++.+..++....+..........       .+..+...|  .+..+..+
T Consensus       184 -----------~~----~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~  245 (376)
T 3q7m_A          184 -----------PT----TA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL  245 (376)
T ss_dssp             -----------CE----EE-T-T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEE
T ss_pred             -----------cE----EE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEE
Confidence                       00    00 1 1 244455566666666544443332221100       000000111  24577778


Q ss_pred             EecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEec
Q psy13076        281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ  360 (423)
Q Consensus       281 s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~  360 (423)
                      +.++.+..+|.++++.......    .....+..  ++..+..++.++.+..+|..+++.+-..........  ......
T Consensus       246 ~~~g~l~~~d~~tG~~~w~~~~----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~--~~~~~~  317 (376)
T 3q7m_A          246 AYNGNLTALDLRSGQIMWKREL----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLL--TSPVLY  317 (376)
T ss_dssp             CTTSCEEEEETTTCCEEEEECC----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCC--CCCEEE
T ss_pred             ecCcEEEEEECCCCcEEeeccC----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcc--cCCEEE
Confidence            8899999999999987755432    22344444  356777788899999999999986644431110000  111225


Q ss_pred             CcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        361 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       361 g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      +..|..++.+|.+..+|..+++. +.........+.+.-.. .+..|+.++.||.+..|+
T Consensus       318 ~~~l~v~~~~g~l~~~d~~tG~~-~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          318 NGNLVVGDSEGYLHWINVEDGRF-VAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCE-EEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcE-EEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence            77888899999999999988643 33333322333221111 256777888999999987

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.07  E-value=1.6e-08  Score=91.34  Aligned_cols=294  Identities=8%  Similarity=-0.028  Sum_probs=173.1

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCC-Cce
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG-QPI   94 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~-~~~   94 (423)
                      ++.|..++.++.|..+| .+ .+....+..+...+.++...+++. |..++.+  |..+|. +++.+......... ...
T Consensus        30 ~g~l~v~t~~~~l~~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~  103 (330)
T 3hxj_A           30 NGTIYLGSSNKNLYAIN-TD-GSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF  103 (330)
T ss_dssp             TSCEECSSTTTTTEEEC-TT-SCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred             CCeEEEEcCCCEEEEEC-CC-CcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence            45566678889999999 54 344444454555667777777665 4445555  888886 44433222211111 111


Q ss_pred             EEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCC
Q psy13076         95 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI  174 (423)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  174 (423)
                      .+.   ++..++.+.+..+..++.+ ++....+..+...+.++...+++. +..++.++.|..+|.. ++.......  .
T Consensus       104 ~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~--~  175 (330)
T 3hxj_A          104 TIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT--N  175 (330)
T ss_dssp             EEE---TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC--S
T ss_pred             eEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec--C
Confidence            121   5555555556778888877 655555544444556666777776 4456678999999987 555443332  2


Q ss_pred             CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee
Q psy13076        175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF  254 (423)
Q Consensus       175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~  254 (423)
                      ...+.++...+++...+..   ..  ...++ ..+............+.++...+++.  +..++.++.+..++.. ...
T Consensus       176 ~~~~~~~~~d~~g~l~v~t---~~--l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~~-g~~  246 (330)
T 3hxj_A          176 DAITSAASIGKDGTIYFGS---DK--VYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINPD-GTE  246 (330)
T ss_dssp             SCCCSCCEECTTCCEEEES---SS--EEEEC-TTSCEEEEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECTT-SCE
T ss_pred             CCceeeeEEcCCCEEEEEe---CE--EEEEC-CCCcEEEEEccCCcceeceEECCCCe--EEEEcCCCeEEEECCC-CCE
Confidence            3456667777777644432   21  22333 44444444444445567777777654  6667778888888743 232


Q ss_pred             eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEe
Q psy13076        255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD  334 (423)
Q Consensus       255 ~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd  334 (423)
                      ..........+..+.+.++| .|..++.+|.|..+|. +++.......  ....+.++..+++|+. ..++.+|.+++..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~--~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~  321 (330)
T 3hxj_A          247 KWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFET--GSWIIATPVIDENGTI-YFGTRNGKFYALF  321 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEEC--SSCCCSCCEECTTCCE-EEECTTSCEEEEE
T ss_pred             eEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEc--CCccccceEEcCCCEE-EEEcCCCeEEEEe
Confidence            23333333333445566566 5666778889999995 6665544432  2344567777778765 4578899998877


Q ss_pred             cCC
Q psy13076        335 IET  337 (423)
Q Consensus       335 ~~~  337 (423)
                      .+.
T Consensus       322 ~~~  324 (330)
T 3hxj_A          322 NLE  324 (330)
T ss_dssp             C--
T ss_pred             ccc
Confidence            654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.05  E-value=8.1e-08  Score=95.57  Aligned_cols=300  Identities=11%  Similarity=0.078  Sum_probs=173.1

Q ss_pred             CCeEEEecCCeEEEEecCCCcccccccCCcc-----------eEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEee
Q psy13076        102 GKNFLYTNGNSVIIRNIENPAISDIYTEHSC-----------AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE  170 (423)
Q Consensus       102 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~-----------~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  170 (423)
                      +..++.+..+.+...|.++++.+..+.....           ....+.+  ++..++.++.|+.|..+|.++++.++...
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            3344444445566666666665554432210           0011222  45678888899999999999998877655


Q ss_pred             ec-CCC--CCeeE-EEECCCCCeEEEEEcC----CceeeEEEeecCCcceecccCCCc----------------------
Q psy13076        171 FH-PIG--GPIKD-IAWSPDNQRMVVVGEG----RERFGHVFMSETGTSVGEISGQSK----------------------  220 (423)
Q Consensus       171 ~~-~~~--~~v~~-v~~s~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----------------------  220 (423)
                      .. ...  ..+.+ ...  .+..+++....    .......++..+++.+........                      
T Consensus       156 ~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g  233 (677)
T 1kb0_A          156 TFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (677)
T ss_dssp             TTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             CCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence            43 100  11111 000  12333333221    123445566666665544322110                      


Q ss_pred             ----------ceeEEEEecCCCeeEEEEeCCC-------------------eEEEEcCCCceeeeeccc--cc-------
Q psy13076        221 ----------PINSCDFKPSRPFRIITGSEDN-------------------TIAVFEGPPFKFKMTKQE--HS-------  262 (423)
Q Consensus       221 ----------~i~~~~~~~~~~~~~~s~s~d~-------------------~i~~~~~~~~~~~~~~~~--~~-------  262 (423)
                                ....+.++|.... ++.++.++                   .|..+|..+.+.....+.  |.       
T Consensus       234 ~~~~~~~g~~~w~~~~~d~~~~~-vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~  312 (677)
T 1kb0_A          234 KWWEAGGGGTMWDSMTFDAELNT-MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST  312 (677)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             ceeEeCCCcccccceeEcCCCCE-EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence                      1124577777665 44454443                   488888877766655432  21       


Q ss_pred             cCeEEEEECCCC---CEEEEEEecCeEEEEECCCccceecccccccC--------CC-e---------------------
Q psy13076        263 RFVQAVRYSPSG---SHFASAGFDGKVFLYDGASADLVSELGNPAHK--------GG-V---------------------  309 (423)
Q Consensus       263 ~~i~~l~~s~~g---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--------~~-i---------------------  309 (423)
                      .....+....+|   +.++.++.+|.++++|..+++.+.........        +. +                     
T Consensus       313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~  392 (677)
T 1kb0_A          313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA  392 (677)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred             CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence            112233344477   67899999999999999999886554321000        00 0                     


Q ss_pred             ---EEEEECCCCCeEEEEeCC-------------------------------------------CcEEEEecCCcceeee
Q psy13076        310 ---YAVAWKPDGTQLLTASGD-------------------------------------------KTCKLWDIETKSAVSE  343 (423)
Q Consensus       310 ---~~l~~~~~~~~l~s~s~d-------------------------------------------~~i~iwd~~~~~~i~~  343 (423)
                         ..++++|++.++.+...+                                           +.|..||+.+++.+-+
T Consensus       393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~  472 (677)
T 1kb0_A          393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS  472 (677)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred             cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence               157889988888775432                                           7899999999987766


Q ss_pred             eeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEec-cCCCceeEEEecCCCCeEEE
Q psy13076        344 FLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTVFT  409 (423)
Q Consensus       344 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~l~s  409 (423)
                      +........  ..+...|..+..++.++.++.||..+.+.. ..+. ++...-.-+.++++++.++.
T Consensus       473 ~~~~~~~~~--g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          473 VEHVSPWNG--GTLTTAGNVVFQGTADGRLVAYHAATGEKL-WEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEESSSCCC--CEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cCCCCCCcC--cceEeCCCEEEEECCCCcEEEEECCCCcee-eeeeCCCCcccCCEEEEeCCEEEEE
Confidence            544332211  223457888888999999999999987553 4433 44333445667788875543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.05  E-value=7.2e-08  Score=87.02  Aligned_cols=299  Identities=13%  Similarity=0.044  Sum_probs=163.0

Q ss_pred             EEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCc
Q psy13076         52 ALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHS  131 (423)
Q Consensus        52 ~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~  131 (423)
                      +..+..++ .|..++.++.|..|| .+++.+...... ......+..+++|..++.+.+  +..++. +++....+....
T Consensus        24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~   97 (330)
T 3hxj_A           24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSG-EIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKK   97 (330)
T ss_dssp             CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGG-GEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred             CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecC-CCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCC
Confidence            34444444 466777889999999 777665443211 001111233445554443333  666664 555544443332


Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS  211 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      .......+.  +..+..++.++.|..+|.. ++........  ...+.++..                            
T Consensus        98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~--~~~~~~~~~----------------------------  144 (330)
T 3hxj_A           98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK--KAIYATPIV----------------------------  144 (330)
T ss_dssp             ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS--SCCCSCCEE----------------------------
T ss_pred             CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC--CceeeeeEE----------------------------
Confidence            222222222  4456667777888888866 4433322211  111111122                            


Q ss_pred             eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEEC
Q psy13076        212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDG  291 (423)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~  291 (423)
                                      .+++.  +..++.++.+..++.. .+...........+.++...++|.+.+. +  +.|..+| 
T Consensus       145 ----------------~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-  201 (330)
T 3hxj_A          145 ----------------SEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-  201 (330)
T ss_dssp             ----------------CTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-
T ss_pred             ----------------cCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-
Confidence                            22222  4445666777777755 3333333333445566777778875554 3  7899999 


Q ss_pred             CCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCC
Q psy13076        292 ASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG  371 (423)
Q Consensus       292 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~  371 (423)
                      .+++.......  ....+.++..+++|... .++.++.+..+|. +++.+..+....... .... ...+..|..++.++
T Consensus       202 ~~g~~~~~~~~--~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~-~~~~-~~~~g~l~v~t~~g  275 (330)
T 3hxj_A          202 PDGTEKWNFYA--GYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGKRIE-SSPV-IGNTDTIYFGSYDG  275 (330)
T ss_dssp             TTSCEEEEECC--SSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSSCCC-SCCE-ECTTSCEEEECTTC
T ss_pred             CCCcEEEEEcc--CCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCCCcc-ccce-EcCCCeEEEecCCC
Confidence            67665544432  33457778888887654 4566778888874 455444443322111 1111 12356677888888


Q ss_pred             cEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        372 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       372 ~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      .+..+|. +. ..+.........+.++...+++++. .++.+|.+++-..
T Consensus       276 gl~~~d~-~g-~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~  322 (330)
T 3hxj_A          276 HLYAINP-DG-TEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFN  322 (330)
T ss_dssp             EEEEECT-TS-CEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC
T ss_pred             CEEEECC-CC-cEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEec
Confidence            9999985 32 3333444345567788877777654 5788999987654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.98  E-value=6.8e-07  Score=88.81  Aligned_cols=336  Identities=12%  Similarity=0.106  Sum_probs=170.7

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccC----------ce-eEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK----------PI-TALALSPDRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~----------~V-~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      .++.|..++.++.|.-+|..++...- .++....          .+ ..+++  .+..|+.++.|+.|..+|.++++++=
T Consensus        65 ~~g~vyv~~~~~~v~AlD~~tG~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           65 HDGVIYTSMSWSRVIAVDAASGKELW-RYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             ETTEEEEEEGGGEEEEEETTTCCEEE-EECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCChhce-EECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEee
Confidence            46677778889999999987754433 2221111          11 11222  35578888899999999999998764


Q ss_pred             cccCCC-------CCCceEEeeCCCCCeEEEec------CCeEEEEecCCCcccccccCC--------------------
Q psy13076         84 TLPRTQ-------RGQPIVLGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEH--------------------  130 (423)
Q Consensus        84 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~h--------------------  130 (423)
                      ......       ...+++.    ++..++...      +..+..+|.++++....+...                    
T Consensus       142 ~~~~~~~~~~~~~~~~P~v~----~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  217 (668)
T 1kv9_A          142 SQQTTDPAKPYSITGAPRVV----KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW  217 (668)
T ss_dssp             EEECSCTTSSCBCCSCCEEE----TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred             eeccCCCCCcceecCCCEEE----CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence            443211       1111111    233333222      245777777777665544210                    


Q ss_pred             -----------cceEEEEEECCCCCEEEEEccCC-------------------cEEEEEcCCCceeEEeeecCCC-----
Q psy13076        131 -----------SCAVNVAKYSPSGFYIASGDISG-------------------KVRIWDTVNKEHILKNEFHPIG-----  175 (423)
Q Consensus       131 -----------~~~i~~~~~sp~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~~~~-----  175 (423)
                                 ........+.|+...++.+..++                   .|..+|.++++..+..+...+.     
T Consensus       218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~  297 (668)
T 1kv9_A          218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT  297 (668)
T ss_dssp             CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             CccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence                       01112357888777888777665                   3888888888877665543211     


Q ss_pred             --CCeeEEEECCCCC--eEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC
Q psy13076        176 --GPIKDIAWSPDNQ--RMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP  251 (423)
Q Consensus       176 --~~v~~v~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~  251 (423)
                        .+.....+..+|+  .+++.+ ........++..+++.+........+ ....+.+.....+...  +..   |+...
T Consensus       298 ~~~~~~~~d~~~~G~~~~~v~~~-~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~~~g~p~~~~--~~~---~~~~~  370 (668)
T 1kv9_A          298 ATQQITLAELNIDGKPRKVLMQA-PKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDLATGRPVEAP--GVR---YEKEP  370 (668)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEEC-CTTSEEEEEETTTCCEEEEEESSCCC-SEEEECTTTCCEEECT--TTT---CSSSC
T ss_pred             CCCCcEEEEeccCCcEEEEEEEE-CCCCEEEEEECCCCCEeccccccccc-cccccccccCCccccc--ccc---ccCCe
Confidence              2222222222443  122222 22334455556666655433221100 0001111000000000  000   00000


Q ss_pred             ceeeeeccccccCeEEEEECCCCCEEEE------------------------------------EEecCeEEEEECCCcc
Q psy13076        252 FKFKMTKQEHSRFVQAVRYSPSGSHFAS------------------------------------AGFDGKVFLYDGASAD  295 (423)
Q Consensus       252 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s------------------------------------~s~dg~i~vwd~~~~~  295 (423)
                       ........-...-..++++|+..++..                                    ...+|.|.-||..+++
T Consensus       371 -~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~  449 (668)
T 1kv9_A          371 -IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK  449 (668)
T ss_dssp             -EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE
T ss_pred             -eEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc
Confidence             000000000000112445555444332                                    1235889999999998


Q ss_pred             ceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc-EEEEEe
Q psy13076        296 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD-YLLTVS  368 (423)
Q Consensus       296 ~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~-~l~~~~  368 (423)
                      ...+...   ........+...+.+++.++.|+.++.||.++++.+..+..........+....+|+ +++.++
T Consensus       450 ~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          450 AAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            8766532   122223334456788899999999999999999998887665444434444445676 444443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.97  E-value=2.3e-07  Score=85.35  Aligned_cols=223  Identities=10%  Similarity=0.089  Sum_probs=134.6

Q ss_pred             CCCCe-EEEecCCCceEEeecCCc----ceeecccCC----CCC--CceEEeeCCCCCeEEEecC-------CeEEEEec
Q psy13076         57 PDRGT-VFTGSHDGFITRWNAKTE----YIFATLPRT----QRG--QPIVLGGDPKGKNFLYTNG-------NSVIIRNI  118 (423)
Q Consensus        57 ~~~~~-l~sg~~D~~i~vW~~~~~----~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~-------~~~~i~~~  118 (423)
                      +++++ +++|-.+++|.+.|+.+.    ++.+.+...    ..+  .+--+...|+| .++...+       +.+.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77776 456778999999999765    444443200    001  12224566888 5555433       47889998


Q ss_pred             CCCcccccccC--Cc-ceEEEEEECCCCCEEEEEc-------------------cCCcEEEEEcCCCceeEEeeecCCCC
Q psy13076        119 ENPAISDIYTE--HS-CAVNVAKYSPSGFYIASGD-------------------ISGKVRIWDTVNKEHILKNEFHPIGG  176 (423)
Q Consensus       119 ~~~~~~~~~~~--h~-~~i~~~~~sp~~~~l~s~~-------------------~d~~i~vwd~~~~~~~~~~~~~~~~~  176 (423)
                      ++.++...+..  .. .--..+.|+|+++.+++..                   ...+|.+||+.+.+............
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            88877766642  22 1123467899999999885                   47899999998765444333321112


Q ss_pred             CeeEEEE--CCCCCeEEEEEc-----CCceeeEEEeecCCcc-------------eeccc---C----CCcceeEEEEec
Q psy13076        177 PIKDIAW--SPDNQRMVVVGE-----GRERFGHVFMSETGTS-------------VGEIS---G----QSKPINSCDFKP  229 (423)
Q Consensus       177 ~v~~v~~--s~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------------~~~~~---~----~~~~i~~~~~~~  229 (423)
                      ....+.|  +|+++++.+++.     ...... ++..+.+.-             ...+.   .    ....+..+.++|
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~-v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIW-LWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEE-EEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEE-EEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            3345656  999999888775     433222 222211110             00010   0    013467889999


Q ss_pred             CCCeeEEEEeCCCeEEEEcCC-C--ceeeeecccc--------------ccCeEEEEECCCCCEEEEEE
Q psy13076        230 SRPFRIITGSEDNTIAVFEGP-P--FKFKMTKQEH--------------SRFVQAVRYSPSGSHFASAG  281 (423)
Q Consensus       230 ~~~~~~~s~s~d~~i~~~~~~-~--~~~~~~~~~~--------------~~~i~~l~~s~~g~~l~s~s  281 (423)
                      ++.++.++.-..+.|.+|+.. +  .++.......              ......++++|||++|+++.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999977777778999999863 2  2222211111              01357789999999988875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.96  E-value=9.3e-10  Score=101.42  Aligned_cols=259  Identities=11%  Similarity=0.059  Sum_probs=132.6

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC----C
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ----R   90 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~----~   90 (423)
                      +++.+++++.||.|..||..++ +..-.++.  +++.+..+..++..+++++.|+.|+.||.++++.+-......    .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG-~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG-SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC-CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCC-CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            6899999999999999999874 44445555  566666666778888999999999999998886543332110    0


Q ss_pred             CCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEee
Q psy13076         91 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE  170 (423)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  170 (423)
                      ..++.   ..++..++.+.+..+..+|.++++....+..+.    ...++|++..+++++.|+.|+.||.++++..+...
T Consensus        85 ~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           85 ASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             TCSCC--------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             cCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            11111   112333333445678899999998888776654    23567788899999999999999998877654332


Q ss_pred             ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076        171 FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP  250 (423)
Q Consensus       171 ~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~  250 (423)
                      ....    ....+.++.                                        ..++  .++.++.++.+..||..
T Consensus       158 ~~~~----~~~~~~~~~----------------------------------------~~~~--~v~~~~~dg~v~a~d~~  191 (369)
T 2hz6_A          158 YFDY----AASLPEDDV----------------------------------------DYKM--SHFVSNGDGLVVTVDSE  191 (369)
T ss_dssp             EEEE----CCBCCCCCT----------------------------------------TCCC--CEEEEETSCEEEEECTT
T ss_pred             cccc----cCccccCCc----------------------------------------cccc--eEEEECCCCEEEEEECC
Confidence            2100    000000000                                        0001  25567788889999877


Q ss_pred             CceeeeeccccccCeEEEEECCCCCEEEE--EEecCeEEEEECCCcc----ceecccccccCCCeEEEEECC--CCCeEE
Q psy13076        251 PFKFKMTKQEHSRFVQAVRYSPSGSHFAS--AGFDGKVFLYDGASAD----LVSELGNPAHKGGVYAVAWKP--DGTQLL  322 (423)
Q Consensus       251 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~s--~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~i~~l~~~~--~~~~l~  322 (423)
                      ..+...........+....++++|...+.  ...++.++.+|..+++    ...+....   +.+.    +|  .+..|.
T Consensus       192 tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~---~~~~----sp~~~~g~ly  264 (369)
T 2hz6_A          192 SGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFP---KETE----AKSKLTPTLY  264 (369)
T ss_dssp             TCCEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCC---CHHH----HHHHSEEEEC
T ss_pred             CCcEEEEecCCCceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccC---cccc----ccccccceEE
Confidence            66655554432222334456667653211  1124556667766666    44333211   1111    22  345677


Q ss_pred             EEeCCCcEEEEecC
Q psy13076        323 TASGDKTCKLWDIE  336 (423)
Q Consensus       323 s~s~d~~i~iwd~~  336 (423)
                      .++.||.+..++..
T Consensus       265 v~~~~G~l~al~~~  278 (369)
T 2hz6_A          265 VGKYSTSLYASPSM  278 (369)
T ss_dssp             BEECSSCEECCEEE
T ss_pred             EecccCCEEecCcc
Confidence            78888988888775

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.95  E-value=6.3e-05  Score=76.36  Aligned_cols=387  Identities=12%  Similarity=0.067  Sum_probs=214.5

Q ss_pred             CEEEEEeccceEEEEeccCCCCceeeccc------ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC--
Q psy13076         17 DYLLTVSLSGFISYLDVNNPSTPIRVIKG------HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT--   88 (423)
Q Consensus        17 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~g------h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~--   88 (423)
                      +.|..++.++.|..+|..+  ..+..+..      ....|.++...+++.+.+ |..++.+..+|.++++........  
T Consensus       128 g~lwi~t~~~gl~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~  204 (781)
T 3v9f_A          128 KGLWVCTYYRGIEYLDIAT--GKFTHYNKSTVPALPSEQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQN  204 (781)
T ss_dssp             SEEEEEESSSCEEEEETTT--TEEEEESTTTCTTCSCCCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC----
T ss_pred             CCEEEEECCCCeeEEECCC--CeEEeeccCcccCCCccceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCC
Confidence            4455556455677888653  22222221      134688888888777665 555556888998776543211100  


Q ss_pred             ----CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccC-------CcceEEEEEECCCCCEEEEEccCCcEEE
Q psy13076         89 ----QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE-------HSCAVNVAKYSPSGFYIASGDISGKVRI  157 (423)
Q Consensus        89 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------h~~~i~~~~~sp~~~~l~s~~~d~~i~v  157 (423)
                          .......+..+++|.+.+.+.+ .+.+++.+++........       ....|.++...++|.+.+ |...+.|.+
T Consensus       205 ~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~  282 (781)
T 3v9f_A          205 PNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMI  282 (781)
T ss_dssp             ----CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEE
T ss_pred             cccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEE
Confidence                1123345667788888887765 788888776655433221       235689999888887555 444456888


Q ss_pred             EEcCCCceeEEee--------e----cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecc----------
Q psy13076        158 WDTVNKEHILKNE--------F----HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI----------  215 (423)
Q Consensus       158 wd~~~~~~~~~~~--------~----~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  215 (423)
                      +|..+........        .    .-....|.++...++|..-+.. ...+.  ..+...... ...+          
T Consensus       283 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt-~~~Gl--~~~~~~~~~-~~~~~~~~~~~~~~  358 (781)
T 3v9f_A          283 LDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGT-WGGGI--NFISNAPPT-FHTWSYSPTQMNES  358 (781)
T ss_dssp             EETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEE-BSSCE--EEECSSCCS-CEEEC----CCCSS
T ss_pred             ECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEe-cCCeE--EEeCCCCCc-ceeeccCccccccC
Confidence            8876543211110        0    0123568888888888754433 12221  122222111 1111          


Q ss_pred             cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec---cccccCeEEEEECCCCCEEEEEEecCeEEEEECC
Q psy13076        216 SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK---QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA  292 (423)
Q Consensus       216 ~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~---~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~  292 (423)
                      ......|.++...+++.  +..|+.++.+..|+..........   ......|.++...++|.+.+ |+.++-+..++.+
T Consensus       359 ~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~  435 (781)
T 3v9f_A          359 SLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTR  435 (781)
T ss_dssp             CCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSS
T ss_pred             CCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCC
Confidence            11234577777776664  566776777888875433322111   12235688888888887554 6666678899887


Q ss_pred             Cccceecccc-cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC-c---eeEeeEEEEEecCcEEEEE
Q psy13076        293 SADLVSELGN-PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG-N---QVEDQQVSCLWQGDYLLTV  367 (423)
Q Consensus       293 ~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~-~---~~~~~~~~~~~~g~~l~~~  367 (423)
                      +++.. .+.. ......|.++..+++|++.+. +. +-+..+|..+++........ .   ......+....+|. |-.|
T Consensus       436 ~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWig  511 (781)
T 3v9f_A          436 LKKFQ-IIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIG  511 (781)
T ss_dssp             SCEEE-ECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEE
T ss_pred             CCcEE-EeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEE
Confidence            66532 2221 123457899999988876654 44 45888998776532211111 0   11112222223444 4455


Q ss_pred             eCCCcEEEEecCCCCCceEEecc----CCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        368 SLSGFISYLDVNNPSTPIRVIKG----HNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       368 ~~~~~i~~~~~~~~~~~~~~~~~----h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      +..+.+..++..+..  +..+..    ....|+++...+++++.++.. +|.+..||.+
T Consensus       512 t~~~Gl~~~~~~~~~--~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~  567 (781)
T 3v9f_A          512 TFGGGVGIYTPDMQL--VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSAR  567 (781)
T ss_dssp             ESSSCEEEECTTCCE--EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTT
T ss_pred             EcCCCEEEEeCCCCe--EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCC
Confidence            554557778765432  222211    134689999988988766554 6665777754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=7.7e-05  Score=75.69  Aligned_cols=402  Identities=9%  Similarity=0.021  Sum_probs=220.4

Q ss_pred             ccceeeEEEE---eCCEEEEEeccceEEEEeccCCCCceeecc-----c---ccCceeEEEEeC--CCCeEEEecCCCce
Q psy13076          5 VEDQQVSCLW---QGDYLLTVSLSGFISYLDVNNPSTPIRVIK-----G---HNKPITALALSP--DRGTVFTGSHDGFI   71 (423)
Q Consensus         5 ~~~~~~~~~~---~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-----g---h~~~V~~l~~~~--~~~~l~sg~~D~~i   71 (423)
                      +++..|.+..   +|..|-.++.++.+..+|..+..  +..+.     .   ....|.++...+  ++.+.+ +..++.|
T Consensus        63 l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~--f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi-~t~~~gl  139 (781)
T 3v9f_A           63 ITGNELNEVYTDPVQPVIWIATQRAGLNAYNYETQS--FSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWV-CTYYRGI  139 (781)
T ss_dssp             CSCSCEEEEEECSSSSEEEEEESSSCEEEEETTTTE--EEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEE-EESSSCE
T ss_pred             ccccccceEEEcCCCCEEEEEeCCCCcceECCCCCe--EEeeccccCCCCCcccCcceEEEecCccCCCEEE-EECCCCe
Confidence            5555555554   35514446667578899976422  22221     1   123688888877  666544 5545568


Q ss_pred             EEeecCCcceeecccCC----CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccccc-------CCcceEEEEEEC
Q psy13076         72 TRWNAKTEYIFATLPRT----QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT-------EHSCAVNVAKYS  140 (423)
Q Consensus        72 ~vW~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------~h~~~i~~~~~s  140 (423)
                      ..+|.++++........    .......+..+++|...+.+.+..+..++.++........       -....|.++...
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d  219 (781)
T 3v9f_A          140 EYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKD  219 (781)
T ss_dssp             EEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEEC
T ss_pred             eEEECCCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEc
Confidence            88888776543221100    1122234555667777777666678888876654433211       113568899888


Q ss_pred             CCCCEEEEEccCCcEEEEEcCCCceeEEeee-----cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee--
Q psy13076        141 PSGFYIASGDISGKVRIWDTVNKEHILKNEF-----HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG--  213 (423)
Q Consensus       141 p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  213 (423)
                      ++|.+.+... + .+.+||..+.+...-...     ......|.++...++|...+. +...+.  ..+.........  
T Consensus       220 ~~g~lwigt~-~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~~Gl--~~~~~~~~~~~~~~  294 (781)
T 3v9f_A          220 TNGNIWIGTS-K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIA-TELNGI--MILDLQQNQFLLPE  294 (781)
T ss_dssp             TTCCEEEEET-T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEE-ESSSCE--EEEETTCC------
T ss_pred             CCCCEEEEeC-C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEE-eCCCCe--EEECCCCCeeeeee
Confidence            9888766543 3 688899765443211000     112356888888888775443 321221  223322221100  


Q ss_pred             c------------ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec---------cccccCeEEEEECC
Q psy13076        214 E------------ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK---------QEHSRFVQAVRYSP  272 (423)
Q Consensus       214 ~------------~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~---------~~~~~~i~~l~~s~  272 (423)
                      .            -......|.++...+++.  +..|+.++.|..++.....+....         ......|.++...+
T Consensus       295 ~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~  372 (781)
T 3v9f_A          295 QIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG  372 (781)
T ss_dssp             ---CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT
T ss_pred             ccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC
Confidence            0            011234577777777664  667777788888875433222111         11235688998888


Q ss_pred             CCCEEEEEEecCeEEEEECCCccceeccc-ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC--ce
Q psy13076        273 SGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG--NQ  349 (423)
Q Consensus       273 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~--~~  349 (423)
                      +|.+ ..|+.++-|..++..++....... .......|.++...++|++.+ |+.++-+..+|.++++. ..+...  ..
T Consensus       373 ~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~~~~~~~~~~  449 (781)
T 3v9f_A          373 QGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF-QIIELEKNEL  449 (781)
T ss_dssp             TSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE-EECCSTTTCC
T ss_pred             CCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE-EEeccCCCCC
Confidence            8864 456666778899876543221110 012345689999888887665 56656688899876643 222110  01


Q ss_pred             eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc----CCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        350 VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG----HNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       350 ~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      .....+....+ ..|-.|+. +.+..++..+..........    ....|+++...+++++.+....+| +..+|..
T Consensus       450 ~~v~~i~~d~~-g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~  523 (781)
T 3v9f_A          450 LDVRVFYEDKN-KKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPD  523 (781)
T ss_dssp             CCEEEEEECTT-SEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTT
T ss_pred             CeEEEEEECCC-CCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCC
Confidence            11112222223 34555555 66888887664332211111    136799999999888766544344 5556643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.90  E-value=2.1e-06  Score=79.11  Aligned_cols=224  Identities=12%  Similarity=0.115  Sum_probs=136.6

Q ss_pred             CCCCeEEEEEcCCceeeEEEeecCC----cceeccc-------CCCcceeEEEEecCCCeeEEEEeCC------CeEEEE
Q psy13076        185 PDNQRMVVVGEGRERFGHVFMSETG----TSVGEIS-------GQSKPINSCDFKPSRPFRIITGSED------NTIAVF  247 (423)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------~~~~~i~~~~~~~~~~~~~~s~s~d------~~i~~~  247 (423)
                      ++++++++.+.... ..++++..+.    +....+.       ........+...|++  +++++..+      +.+.++
T Consensus        93 ~~r~~l~v~~l~s~-~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSS-RIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTC-CEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCC-eEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEE
Confidence            77888777665443 3455554322    2222221       112245566778888  35555444      789999


Q ss_pred             cCCCceeeeecccc--c-cCeEEEEECCCCCEEEEEE-------------------ecCeEEEEECCCccceeccccccc
Q psy13076        248 EGPPFKFKMTKQEH--S-RFVQAVRYSPSGSHFASAG-------------------FDGKVFLYDGASADLVSELGNPAH  305 (423)
Q Consensus       248 ~~~~~~~~~~~~~~--~-~~i~~l~~s~~g~~l~s~s-------------------~dg~i~vwd~~~~~~~~~~~~~~~  305 (423)
                      |..+++........  . ..-..+.|+|+++.+++..                   .+.+|.+||+.+++...++.....
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            98877776655422  2 2233578899999888875                   368999999998877776653211


Q ss_pred             CCCeEEEEE--CCCCCeEEEEe------CCCcEEEEecCCccee--eeeeeCc-----------------eeEeeEEEEE
Q psy13076        306 KGGVYAVAW--KPDGTQLLTAS------GDKTCKLWDIETKSAV--SEFLMGN-----------------QVEDQQVSCL  358 (423)
Q Consensus       306 ~~~i~~l~~--~~~~~~l~s~s------~d~~i~iwd~~~~~~i--~~~~~~~-----------------~~~~~~~~~~  358 (423)
                      ......+.|  +|+++++..++      .+++|.+|....++.-  .......                 ......+.++
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence            123455656  99999887766      5668877765443211  1110000                 1123456677


Q ss_pred             ecCcEEEEEe-CCCcEEEEecCCCCCc--eEEe-cc-------C------CCceeEEEecCCCCeEEEec
Q psy13076        359 WQGDYLLTVS-LSGFISYLDVNNPSTP--IRVI-KG-------H------NKPITALALSPDRGTVFTGS  411 (423)
Q Consensus       359 ~~g~~l~~~~-~~~~i~~~~~~~~~~~--~~~~-~~-------h------~~~v~~i~~sp~~~~l~s~s  411 (423)
                      ++|++|.+.. ..+.|.++|+.++..+  +..+ .|       |      ...-..++++|||++|+.+.
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            8999987665 5678999998654332  2222 12       1      01358899999999988776

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.85  E-value=1.7e-07  Score=89.29  Aligned_cols=236  Identities=13%  Similarity=0.131  Sum_probs=147.8

Q ss_pred             CCCCeEEEec--CCeEEEEecCCCcccccccCC-cceEEEEEE-C-CCCCEEEEEc------------------cCCcEE
Q psy13076        100 PKGKNFLYTN--GNSVIIRNIENPAISDIYTEH-SCAVNVAKY-S-PSGFYIASGD------------------ISGKVR  156 (423)
Q Consensus       100 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~h-~~~i~~~~~-s-p~~~~l~s~~------------------~d~~i~  156 (423)
                      ++|+.+....  +..+.+-++++-++.+++.-- ...+..+++ + |+++++..++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            4666555543  457888899888877644321 235788887 5 9999998884                  356799


Q ss_pred             EEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce-------------eeE---------------------
Q psy13076        157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER-------------FGH---------------------  202 (423)
Q Consensus       157 vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~-------------~~~---------------------  202 (423)
                      +.|.++.+........   +....++++|+|+++++.+...+.             ...                     
T Consensus       179 vID~~t~~v~~qI~Vg---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEECCCCeEEEEEEeC---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            9999887665544332   234668899999999988754311             111                     


Q ss_pred             --EEeecC--Ccc-eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce------------eeeeccccccCe
Q psy13076        203 --VFMSET--GTS-VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK------------FKMTKQEHSRFV  265 (423)
Q Consensus       203 --~~~~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~------------~~~~~~~~~~~i  265 (423)
                        +.+..+  +.. +..+. -.....++.++|++.+.++++..++++.++|....+            ..... ......
T Consensus       256 V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP  333 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGP  333 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCE
T ss_pred             EEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCc
Confidence              112221  111 11111 112456789999999988888899999999976442            11111 122346


Q ss_pred             EEEEECCCCCEEEEEEecCeEEEEECCC----------ccceeccccc---ccCCCeEEEEECCCCCeEEEEeC---CCc
Q psy13076        266 QAVRYSPSGSHFASAGFDGKVFLYDGAS----------ADLVSELGNP---AHKGGVYAVAWKPDGTQLLTASG---DKT  329 (423)
Q Consensus       266 ~~l~~s~~g~~l~s~s~dg~i~vwd~~~----------~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~s~s~---d~~  329 (423)
                      ..++|+|+|...++.-.|++|.+||..+          .+.+.++...   +|...-.++.++|||++|+++..   |+.
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~  413 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF  413 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred             ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence            7899999993334455699999999876          3334443221   22111123356899999998744   443


Q ss_pred             ----------EEEEecCCcce
Q psy13076        330 ----------CKLWDIETKSA  340 (423)
Q Consensus       330 ----------i~iwd~~~~~~  340 (423)
                                -.++|+..+++
T Consensus       414 ~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          414 LNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             CCCCSSCCEEEEEEECSSSSC
T ss_pred             ccCCCCCCCcceEEEcCCCcE
Confidence                      17899976554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.82  E-value=1.7e-05  Score=69.11  Aligned_cols=234  Identities=9%  Similarity=-0.041  Sum_probs=132.6

Q ss_pred             EEEecCCeEEEEecCCCccc-----ccccCCcceEEEEEECCCCCEEEEE-ccCCcEEEEEcCCCceeEEeeecCCCCCe
Q psy13076        105 FLYTNGNSVIIRNIENPAIS-----DIYTEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEHILKNEFHPIGGPI  178 (423)
Q Consensus       105 ~~~~~~~~~~i~~~~~~~~~-----~~~~~h~~~i~~~~~sp~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~v  178 (423)
                      ++++....+...+++.....     ..+......+..++++|++..+..+ ..++.|..++........  .........
T Consensus         4 l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~~~~~~~p   81 (267)
T 1npe_A            4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT--IIRQDLGSP   81 (267)
T ss_dssp             EEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EECTTCCCE
T ss_pred             EEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE--EEECCCCCc
Confidence            34444445666666544321     1122123456789999976655544 456899999986543221  111111356


Q ss_pred             eEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC--CCeEEEEcCCCceeee
Q psy13076        179 KDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE--DNTIAVFEGPPFKFKM  256 (423)
Q Consensus       179 ~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~--d~~i~~~~~~~~~~~~  256 (423)
                      ..++++|++..+.++...... ...+..+.................++++|.+..+.++...  .+.|..++........
T Consensus        82 ~~ia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~  160 (267)
T 1npe_A           82 EGIALDHLGRTIFWTDSQLDR-IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI  160 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred             cEEEEEecCCeEEEEECCCCE-EEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence            889999988777776554433 2233333222111122222456889999976654444433  4677777643222111


Q ss_pred             eccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~  335 (423)
                      ...........++++|++..|..+. ..+.|.+++.........+.   ......+++.. .+..+++....+.|..+|.
T Consensus       161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---CCCSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---CCCCceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence            1112234578899999877665544 56789999986543322221   12334677764 4455555556789999999


Q ss_pred             CCcceeeeee
Q psy13076        336 ETKSAVSEFL  345 (423)
Q Consensus       336 ~~~~~i~~~~  345 (423)
                      .+++.+..+.
T Consensus       237 ~~g~~~~~i~  246 (267)
T 1npe_A          237 AISKEMDTFH  246 (267)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCCCceEEEc
Confidence            9887776654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.77  E-value=2.8e-05  Score=67.78  Aligned_cols=252  Identities=10%  Similarity=0.014  Sum_probs=140.4

Q ss_pred             EEEEEccCCcEEEEEcCCCceeE---EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcc
Q psy13076        145 YIASGDISGKVRIWDTVNKEHIL---KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP  221 (423)
Q Consensus       145 ~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (423)
                      +|+.++. +.|+.+++.......   ...+......+..++|++++..+.++...... ...+..+.......+......
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~-I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPS-IGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTE-EEEEESSSCCCEEEECTTCCC
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCE-EEEEecCCCCcEEEEECCCCC
Confidence            4444443 467778776432110   00011001235789999988877776654433 233444433322222223346


Q ss_pred             eeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe---cCeEEEEECCCcccee
Q psy13076        222 INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF---DGKVFLYDGASADLVS  298 (423)
Q Consensus       222 i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~---dg~i~vwd~~~~~~~~  298 (423)
                      ...++++|.+..+.++....+.|.+++...................++++|++..|..+..   .+.|..++... ....
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcE
Confidence            7889999877665666667788998875432211111122245688999997666555543   36888887643 2222


Q ss_pred             cccccccCCCeEEEEECCCCCeE-EEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEe-CCCcEEEE
Q psy13076        299 ELGNPAHKGGVYAVAWKPDGTQL-LTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVS-LSGFISYL  376 (423)
Q Consensus       299 ~~~~~~~~~~i~~l~~~~~~~~l-~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~-~~~~i~~~  376 (423)
                      .+.. ........++++|++..| ++-...+.|..+|....... .+..... ....+  ..++..+..+. .++.|..+
T Consensus       160 ~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~~-~P~gi--~~d~~~lyva~~~~~~v~~~  234 (267)
T 1npe_A          160 ILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGLQ-YPFAV--TSYGKNLYYTDWKTNSVIAM  234 (267)
T ss_dssp             EEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECCC-SEEEE--EEETTEEEEEETTTTEEEEE
T ss_pred             EEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEecCCC-CceEE--EEeCCEEEEEECCCCeEEEE
Confidence            2211 122457899999987655 55556789999998754322 2211110 11122  23466665554 56789999


Q ss_pred             ecCCCCCceEEec-cCCCceeEEEecCCCC
Q psy13076        377 DVNNPSTPIRVIK-GHNKPITALALSPDRG  405 (423)
Q Consensus       377 ~~~~~~~~~~~~~-~h~~~v~~i~~sp~~~  405 (423)
                      |..+... +..+. +.......+++.|++.
T Consensus       235 d~~~g~~-~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          235 DLAISKE-MDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             ETTTTEE-EEEECCSSCCCCCCEEEECSCC
T ss_pred             eCCCCCc-eEEEccccccccceeeecCccC
Confidence            8876533 33333 2223467888888764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.76  E-value=5.2e-06  Score=80.80  Aligned_cols=80  Identities=13%  Similarity=0.070  Sum_probs=53.2

Q ss_pred             cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc
Q psy13076        283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD  362 (423)
Q Consensus       283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~  362 (423)
                      +|.|..||..+++...+....   ..+.+..+...+..++.++.|+.++.||.++++.+.++..........+....+|.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~  519 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCeEEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCE
Confidence            478999999999877665321   12222222334567777899999999999999998887665544333444445666


Q ss_pred             EEE
Q psy13076        363 YLL  365 (423)
Q Consensus       363 ~l~  365 (423)
                      .++
T Consensus       520 ~yv  522 (571)
T 2ad6_A          520 QYI  522 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.71  E-value=1.7e-05  Score=77.32  Aligned_cols=80  Identities=15%  Similarity=0.136  Sum_probs=53.2

Q ss_pred             cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc
Q psy13076        283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD  362 (423)
Q Consensus       283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~  362 (423)
                      +|.+.-||..+++.+.+....   ....+-.+...+..++.++.|+.++.||.++++.+-++..........+....+|+
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~  528 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT  528 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cCeEEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCE
Confidence            478899999999876655321   11111112235667888999999999999999998888665544444555555776


Q ss_pred             EEE
Q psy13076        363 YLL  365 (423)
Q Consensus       363 ~l~  365 (423)
                      ..+
T Consensus       529 qyv  531 (599)
T 1w6s_A          529 QYV  531 (599)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.71  E-value=1.8e-08  Score=92.84  Aligned_cols=190  Identities=12%  Similarity=-0.003  Sum_probs=101.0

Q ss_pred             CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCc-
Q psy13076        142 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK-  220 (423)
Q Consensus       142 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  220 (423)
                      ++..+++++.|+.|..||.++++..+....    +++.+..+.+++..+++.+  .+.....++.++++.+.....+.. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~~~v~~s--~dg~l~a~d~~tG~~~w~~~~~~~~   81 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEPAFLPDP--NDGSLYTLGSKNNEGLTKLPFTIPE   81 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC-----CCEEECT--TTCCEEEC-----CCSEECSCCHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceEcCCCEEEEeC--CCCEEEEEECCCCceeeeeeccCcc
Confidence            577899999999999999999988776544    3344444555665544422  222234555556655443332211 


Q ss_pred             cee-EEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceec
Q psy13076        221 PIN-SCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSE  299 (423)
Q Consensus       221 ~i~-~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~  299 (423)
                      .+. +..+. .+. .+++++.++.++.||..+.+.......+.    ...++|++..+++++.|+.|+.||.++++....
T Consensus        82 ~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           82 LVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             HHTTCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             ccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence            111 11111 122 36678889999999987666655544332    234567888999999999999999999987655


Q ss_pred             ccccccCCCeEEEEECCCC---CeEEEEeCCCcEEEEecCCcceeeeeeeC
Q psy13076        300 LGNPAHKGGVYAVAWKPDG---TQLLTASGDKTCKLWDIETKSAVSEFLMG  347 (423)
Q Consensus       300 ~~~~~~~~~i~~l~~~~~~---~~l~s~s~d~~i~iwd~~~~~~i~~~~~~  347 (423)
                      +....    ....+++++.   ..+++++.|+.++.||..+++.+-++...
T Consensus       156 ~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~  202 (369)
T 2hz6_A          156 ATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA  202 (369)
T ss_dssp             EEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred             Eeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence            43211    1223344432   56777889999999999999876655433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.64  E-value=0.00018  Score=70.08  Aligned_cols=80  Identities=20%  Similarity=0.264  Sum_probs=53.9

Q ss_pred             cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc
Q psy13076        283 DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD  362 (423)
Q Consensus       283 dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~  362 (423)
                      +|.|.-||..+++.+.+....   ..+..-.....+.+++.++.|+.++.||.++++.+-++..........+....+|+
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~  541 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence            578999999999877655321   11111111224667888999999999999999999888766554444455555776


Q ss_pred             EEE
Q psy13076        363 YLL  365 (423)
Q Consensus       363 ~l~  365 (423)
                      ..+
T Consensus       542 qYv  544 (582)
T 1flg_A          542 QYL  544 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.64  E-value=6.3e-05  Score=67.53  Aligned_cols=244  Identities=11%  Similarity=0.088  Sum_probs=133.2

Q ss_pred             cccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC------------------CCCCceEEeeCC-CCC
Q psy13076         43 IKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT------------------QRGQPIVLGGDP-KGK  103 (423)
Q Consensus        43 ~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~------------------~~~~~~~~~~~~-~~~  103 (423)
                      +.|.-.....+++.+++.+++++..++.|..|+.+++.........                  ....+..+..++ +++
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~   93 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ   93 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence            3333334567889999988888889999999998765432111000                  012345566776 677


Q ss_pred             eEEEecCCeEEEEecCCCcccccc---cC-CcceEEEEEECC-CCCEEEEEcc-----------------CCcEEEEEcC
Q psy13076        104 NFLYTNGNSVIIRNIENPAISDIY---TE-HSCAVNVAKYSP-SGFYIASGDI-----------------SGKVRIWDTV  161 (423)
Q Consensus       104 ~~~~~~~~~~~i~~~~~~~~~~~~---~~-h~~~i~~~~~sp-~~~~l~s~~~-----------------d~~i~vwd~~  161 (423)
                      +++...+..+...+.+++......   .+ .....+.+++.| +|.+.++-..                 ++.|..+|..
T Consensus        94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            777766666777776655432211   11 113467789999 8876665432                 2456666654


Q ss_pred             CCceeEE-eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC
Q psy13076        162 NKEHILK-NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE  240 (423)
Q Consensus       162 ~~~~~~~-~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~  240 (423)
                      +++.... ..+    .....++|+|+++.+.++...                                            
T Consensus       174 ~~~~~~~~~~~----~~p~gia~~~dg~~lyv~d~~--------------------------------------------  205 (322)
T 2fp8_A          174 TKETTLLLKEL----HVPGGAEVSADSSFVLVAEFL--------------------------------------------  205 (322)
T ss_dssp             TTEEEEEEEEE----SCCCEEEECTTSSEEEEEEGG--------------------------------------------
T ss_pred             CCEEEEeccCC----ccCcceEECCCCCEEEEEeCC--------------------------------------------
Confidence            4332111 111    123456677776655444322                                            


Q ss_pred             CCeEEEEcCCCc---eeeeeccccccCeEEEEECCCCCEEEEEEe----------cCeEEEEECCCccceeccccccc--
Q psy13076        241 DNTIAVFEGPPF---KFKMTKQEHSRFVQAVRYSPSGSHFASAGF----------DGKVFLYDGASADLVSELGNPAH--  305 (423)
Q Consensus       241 d~~i~~~~~~~~---~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~--  305 (423)
                      .+.|..|+....   .... ...... ...++++++|.+.++...          .+.|..+|. .++.+..+..+..  
T Consensus       206 ~~~I~~~~~~~~~~~~~~~-~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~  282 (322)
T 2fp8_A          206 SHQIVKYWLEGPKKGTAEV-LVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFA  282 (322)
T ss_dssp             GTEEEEEESSSTTTTCEEE-EEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTT
T ss_pred             CCeEEEEECCCCcCCccce-EEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCc
Confidence            223333322110   0000 000112 456788899886665544          467888875 4555544432210  


Q ss_pred             CCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       306 ~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      ...+.++++ .++++.++....+.|..+++..+
T Consensus       283 ~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          283 GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            234566666 46777777777888999987643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.62  E-value=4.1e-06  Score=79.86  Aligned_cols=223  Identities=16%  Similarity=0.135  Sum_probs=136.7

Q ss_pred             CCCCEEEEEcc-CCcEEEEEcCCCceeEEeeecCCCCCeeEEEE-C-CCCCeEEEEEcC----------------Cceee
Q psy13076        141 PSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW-S-PDNQRMVVVGEG----------------RERFG  201 (423)
Q Consensus       141 p~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~-s-~~~~~~~~~~~~----------------~~~~~  201 (423)
                      +||+++..... +..|.+.|+.+.+........ .......+++ + |+++++++.+..                .....
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence            47888877655 567999999887765433332 2344678888 5 999999887521                11234


Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC--------------CeEEEEc-------------------
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED--------------NTIAVFE-------------------  248 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d--------------~~i~~~~-------------------  248 (423)
                      .+.+.++.+....+.-.. ....++++|++.+.++++...              ..+.+++                   
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            455555555555544322 346678899998866666443              2244443                   


Q ss_pred             ----CCC--cee-eeeccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCcc------------ceecccccccCCC
Q psy13076        249 ----GPP--FKF-KMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASAD------------LVSELGNPAHKGG  308 (423)
Q Consensus       249 ----~~~--~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~------------~~~~~~~~~~~~~  308 (423)
                          ...  .+. .... ......-++.++|||+++++++ .+..|.++|..+.+            ...++.   -..+
T Consensus       257 ~VID~~~~~~~~~~~~I-pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~---vG~g  332 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYI-PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE---LGLG  332 (595)
T ss_dssp             EEEECSGGGCCSSEEEE-EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB---CCSC
T ss_pred             EEEeCcccCCceeEEEE-ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC---CCCC
Confidence                222  000 0000 0111234689999999876666 57899999998653            122221   2346


Q ss_pred             eEEEEECCCCCeEEEEeCCCcEEEEecCC----------cceeeeeeeCceeEee----EEEEEecCcEEEEEeC
Q psy13076        309 VYAVAWKPDGTQLLTASGDKTCKLWDIET----------KSAVSEFLMGNQVEDQ----QVSCLWQGDYLLTVSL  369 (423)
Q Consensus       309 i~~l~~~~~~~~l~s~s~d~~i~iwd~~~----------~~~i~~~~~~~~~~~~----~~~~~~~g~~l~~~~~  369 (423)
                      ...++|+|+|...++.-.|++|..||+..          .+.+.+...+.+....    .....++|++|++...
T Consensus       333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            78999999996566777899999999977          4455555443321111    1233578999988753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.57  E-value=1.9e-05  Score=68.11  Aligned_cols=197  Identities=10%  Similarity=0.064  Sum_probs=125.6

Q ss_pred             EEEEEECCCCCEEEEEcc--CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc
Q psy13076        134 VNVAKYSPSGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS  211 (423)
Q Consensus       134 i~~~~~sp~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      ...+.|+|++...++.+.  ++.|++.|..+++.......... .....+++.  ++.+.++.- ......+++.++.+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~-~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVW-LKNIGFIYDRRTLSN   98 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEET-TCSEEEEEETTTTEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEe-cCCEEEEEECCCCcE
Confidence            578899998765555543  58999999999886654433221 122334443  556665543 344456777777776


Q ss_pred             eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccc--c---cCeEEEEECCCCCEEEEEEecCeE
Q psy13076        212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH--S---RFVQAVRYSPSGSHFASAGFDGKV  286 (423)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~--~---~~i~~l~~s~~g~~l~s~s~dg~i  286 (423)
                      +..+...  ......+.+++...+ .+..++.+.++|..+++........  .   ..++.+.|. +|..++..-.++.|
T Consensus        99 ~~~i~~g--~~~g~glt~Dg~~l~-vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V  174 (266)
T 2iwa_A           99 IKNFTHQ--MKDGWGLATDGKILY-GSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI  174 (266)
T ss_dssp             EEEEECC--SSSCCEEEECSSSEE-EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEEEECC--CCCeEEEEECCCEEE-EECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence            6666433  112344666776544 4557889999998776654443321  1   235677787 67555555467899


Q ss_pred             EEEECCCccceeccccccc-----------CCCeEEEEECCCCCeE-EEEeCCCcEEEEecCCc
Q psy13076        287 FLYDGASADLVSELGNPAH-----------KGGVYAVAWKPDGTQL-LTASGDKTCKLWDIETK  338 (423)
Q Consensus       287 ~vwd~~~~~~~~~~~~~~~-----------~~~i~~l~~~~~~~~l-~s~s~d~~i~iwd~~~~  338 (423)
                      .+.|..+++.+..+...+.           .....+++|+|+++.| +++....++...++...
T Consensus       175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9999999998777653210           1346899999998654 55556778887776543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.53  E-value=5.7e-05  Score=65.14  Aligned_cols=187  Identities=11%  Similarity=0.003  Sum_probs=120.0

Q ss_pred             eeeEEEEeCCEEEEEec--cceEEEEeccCCCCceeecc-cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec
Q psy13076          8 QQVSCLWQGDYLLTVSL--SGFISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~--dg~i~~~d~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      |-+++++||.+.++.+.  ++.|+++|+.++ +.+..+. +...-...+++.. +++.++.-.++.+.++|.++.+++..
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg-~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQTG-KVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTTC-CEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCCC-CEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEE
Confidence            56777767655554443  589999999874 4444432 1111222455543 34556666789999999999988888


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCC-----cceEEEEEECCCCCEEEEEccCCcEEEE
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEH-----SCAVNVAKYSPSGFYIASGDISGKVRIW  158 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h-----~~~i~~~~~sp~~~~l~s~~~d~~i~vw  158 (423)
                      ++.. ......+.  ++|+.++.+ .++.+.+.|.++.+......--     -..++.+.|. +|+..+....++.|.+-
T Consensus       102 i~~g-~~~g~glt--~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI  177 (266)
T 2iwa_A          102 FTHQ-MKDGWGLA--TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI  177 (266)
T ss_dssp             EECC-SSSCCEEE--ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EECC-CCCeEEEE--ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence            7644 22233333  355544444 4578888998887665554311     1235677777 77666666668899999


Q ss_pred             EcCCCceeEEeeecC-----------CCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        159 DTVNKEHILKNEFHP-----------IGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       159 d~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                      |..+++......+..           .......|+|+|+++.+++.+......
T Consensus       178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v  230 (266)
T 2iwa_A          178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL  230 (266)
T ss_dssp             ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence            999887665544421           113457899999999998887665543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.51  E-value=3.2e-05  Score=76.79  Aligned_cols=257  Identities=12%  Similarity=0.155  Sum_probs=142.8

Q ss_pred             CCEEEEEccCCcEEEEEcCCCceeEEeeecCCC--CCeeEEEECC--CCCeEEEEEcC----CceeeEEEeecCCcceec
Q psy13076        143 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIG--GPIKDIAWSP--DNQRMVVVGEG----RERFGHVFMSETGTSVGE  214 (423)
Q Consensus       143 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~v~~v~~s~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  214 (423)
                      +..++.++.|+.|..+|.++++.++........  ..+.   .+|  .+..+++....    .......++..+++.+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~---~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSIT---GAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCC---SCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceec---CCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            456777888999999999999887765542110  0111   011  12233332221    122344455556665543


Q ss_pred             ccCC---C----------------------------cceeEEEEecCCCeeEEEEeCCC-------------------eE
Q psy13076        215 ISGQ---S----------------------------KPINSCDFKPSRPFRIITGSEDN-------------------TI  244 (423)
Q Consensus       215 ~~~~---~----------------------------~~i~~~~~~~~~~~~~~s~s~d~-------------------~i  244 (423)
                      ....   .                            ..-...++.|.... ++.++.++                   .|
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~l~~~~v  272 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDL-LYVGTGNGSPWNREVRSPGGGDNLYLSSI  272 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence            3210   0                            01123567776654 55555554                   38


Q ss_pred             EEEcCCCceeeeeccc--cc-------cCeEEEEECCCCC---EEEEEEecCeEEEEECCCccceecccccc--------
Q psy13076        245 AVFEGPPFKFKMTKQE--HS-------RFVQAVRYSPSGS---HFASAGFDGKVFLYDGASADLVSELGNPA--------  304 (423)
Q Consensus       245 ~~~~~~~~~~~~~~~~--~~-------~~i~~l~~s~~g~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--------  304 (423)
                      ..+|..+.+.....+.  |.       .......+..+|+   .++.++.+|.++++|..+++.+.......        
T Consensus       273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d  352 (668)
T 1kv9_A          273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD  352 (668)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred             EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence            8888777776655443  21       1222223334665   68889999999999999998763321100        


Q ss_pred             -cCCC-------------------------eEEEEECCCCCeEEEE----------------------------------
Q psy13076        305 -HKGG-------------------------VYAVAWKPDGTQLLTA----------------------------------  324 (423)
Q Consensus       305 -~~~~-------------------------i~~l~~~~~~~~l~s~----------------------------------  324 (423)
                       ..+.                         -..++++|+...+...                                  
T Consensus       353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p  432 (668)
T 1kv9_A          353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP  432 (668)
T ss_dssp             TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred             cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence             0000                         0126777766555431                                  


Q ss_pred             --eCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCc-eeEEEec
Q psy13076        325 --SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP-ITALALS  401 (423)
Q Consensus       325 --s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~-v~~i~~s  401 (423)
                        ..++.|..||..+++.+-+.........  ......|..+..++.++.++.||..+++. +..++..... -.-+.+.
T Consensus       433 ~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~--~~~~t~gg~vf~g~~dg~l~a~d~~tG~~-l~~~~~~~~~~~~p~~~~  509 (668)
T 1kv9_A          433 AAVVSGALLAWDPVKQKAAWKVPYPTHWNG--GTLSTAGNLVFQGTAAGQMHAYSADKGEA-LWQFEAQSGIVAAPMTFE  509 (668)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEESSSCCC--CEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEE
T ss_pred             CCCccceEEEEeCCCCcEEEEccCCCCCcC--ceeEeCCCEEEEECCcccchhhhhhcChh-heEecCCCCcccCceEEE
Confidence              1347899999999987655543332211  12334788888899999999999988654 3333322211 1223445


Q ss_pred             CCCCe
Q psy13076        402 PDRGT  406 (423)
Q Consensus       402 p~~~~  406 (423)
                      .+++.
T Consensus       510 ~~G~~  514 (668)
T 1kv9_A          510 LAGRQ  514 (668)
T ss_dssp             ETTEE
T ss_pred             ECCEE
Confidence            56764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.49  E-value=5.2e-05  Score=64.73  Aligned_cols=185  Identities=15%  Similarity=0.147  Sum_probs=120.1

Q ss_pred             eeeEEEEeCCEEEEEeccc--eEEEEeccCCCCceeecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeec
Q psy13076          8 QQVSCLWQGDYLLTVSLSG--FISYLDVNNPSTPIRVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg--~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~   84 (423)
                      |-+.++ |+.+..+.+.+|  .|+.+|+.++ +....+.-. .........+++ ++.+..-.++.+.++|.++.+++.+
T Consensus        46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tg-kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESG-KTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEECTTTC-CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             ceEEEE-CCEEEEECCCCCCceEEEEECCCC-cEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            445555 677777777766  9999999874 444444322 233332222333 4445556789999999999999888


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEec-CCeEEEEecCCCcccccccC----Cc-ceEEEEEECCCCCEEEEEccCCcEEEE
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTE----HS-CAVNVAKYSPSGFYIASGDISGKVRIW  158 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~----h~-~~i~~~~~sp~~~~l~s~~~d~~i~vw  158 (423)
                      +.....+..+    .++++.++.++ .+.+.+.|.++.+......-    .. ..++.+.|. +|+..+..-.+..|.+.
T Consensus       123 i~~~~eG~gl----t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI  197 (262)
T 3nol_A          123 FNYDGEGWGL----THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRI  197 (262)
T ss_dssp             EECSSCCCCE----EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EECCCCceEE----ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence            8765443322    24566555555 56788888888766655432    11 334556675 77766666678899999


Q ss_pred             EcCCCceeEEeeecCC----------CCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        159 DTVNKEHILKNEFHPI----------GGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       159 d~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                      |.++++......+...          ....+.|||+|+++.|++.+......
T Consensus       198 Dp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~  249 (262)
T 3nol_A          198 DPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKV  249 (262)
T ss_dssp             CTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             ECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCce
Confidence            9998887655544311          23457899999999999988765543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.48  E-value=0.0011  Score=64.56  Aligned_cols=162  Identities=14%  Similarity=0.126  Sum_probs=97.6

Q ss_pred             CeEEEEcCCCceeeeeccc--cc--------cCeEEEEEC-CCCC---EEEEEEecCeEEEEECCCccceeccccccc--
Q psy13076        242 NTIAVFEGPPFKFKMTKQE--HS--------RFVQAVRYS-PSGS---HFASAGFDGKVFLYDGASADLVSELGNPAH--  305 (423)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~--~~--------~~i~~l~~s-~~g~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--  305 (423)
                      +.|..+|..+.+.....+.  |.        .++ -+... .+|+   .++.++.+|.++++|..+++.+........  
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            5788888877776665432  21        112 12222 5674   788899999999999999887654322100  


Q ss_pred             --------CCC---------------------------------eEEEEECCCCCeEEEEe-------------------
Q psy13076        306 --------KGG---------------------------------VYAVAWKPDGTQLLTAS-------------------  325 (423)
Q Consensus       306 --------~~~---------------------------------i~~l~~~~~~~~l~s~s-------------------  325 (423)
                              .+.                                 -..++++|+...+....                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                    000                                 01356777655554432                   


Q ss_pred             --------------CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccC
Q psy13076        326 --------------GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH  391 (423)
Q Consensus       326 --------------~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h  391 (423)
                                    .++.|.-||+.+++.+-+.....+....  .+...|..+..++.++.++.+|..+++. +..++..
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g--~~~tagglvf~g~~dg~l~A~D~~tG~~-lW~~~~~  526 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAG--VLATAGNLVFTGTGDGYFKAFDAKSGKE-LWKFQTG  526 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSC--CEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECS
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCccc--ceEeCCCEEEEECCCCcEEEEECCCCCE-EEEecCC
Confidence                          2578999999999876555433222111  1223567777899999999999988654 3333322


Q ss_pred             CCcee--EEEecCCCCeEE
Q psy13076        392 NKPIT--ALALSPDRGTVF  408 (423)
Q Consensus       392 ~~~v~--~i~~sp~~~~l~  408 (423)
                       ..+.  -+.+..+++.++
T Consensus       527 -~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          527 -SGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             -SCCCSCCEEEEETTEEEE
T ss_pred             -CCcccCceEEEECCEEEE
Confidence             2222  266667887543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.46  E-value=0.00053  Score=66.65  Aligned_cols=163  Identities=12%  Similarity=0.058  Sum_probs=97.1

Q ss_pred             eEEEEcCCCceeeeecccc--c-------cCeEEEEECCCCC---EEEEEEecCeEEEEECCCccceecccccc-c----
Q psy13076        243 TIAVFEGPPFKFKMTKQEH--S-------RFVQAVRYSPSGS---HFASAGFDGKVFLYDGASADLVSELGNPA-H----  305 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~--~-------~~i~~l~~s~~g~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~----  305 (423)
                      .+..+|..+.+.....+..  .       .....+...++|+   .++.++.+|.+.++|..+++.+....... .    
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            5888887766665544321  1       1111123335774   57778899999999999998765543211 0    


Q ss_pred             -----C-CCe--------------------------EEEEECCCCCeEEEEe----------------------------
Q psy13076        306 -----K-GGV--------------------------YAVAWKPDGTQLLTAS----------------------------  325 (423)
Q Consensus       306 -----~-~~i--------------------------~~l~~~~~~~~l~s~s----------------------------  325 (423)
                           . ..+                          ..++++|+..+|....                            
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence                 0 000                          2357888777666553                            


Q ss_pred             ---------CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEec-cCCCce
Q psy13076        326 ---------GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNKPI  395 (423)
Q Consensus       326 ---------~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~h~~~v  395 (423)
                               .++.|..||..+++.+-++........  ......+..+..++.++.++.+|..+.+. +..+. ++...-
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~--~~~~t~gg~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~~~~~  509 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG--GTLYTKGGLVWYATLDGYLKALDNKDGKE-LWNFKMPSGGIG  509 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS--BCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCS
T ss_pred             cCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc--eeEEECCCEEEEEcCCCeEEEEECCCCCE-EEEEeCCCCcEe
Confidence                     357899999999987766544322111  11223567777789999999999988654 33333 221112


Q ss_pred             eEEEecCCCCeEE
Q psy13076        396 TALALSPDRGTVF  408 (423)
Q Consensus       396 ~~i~~sp~~~~l~  408 (423)
                      .-+.+.++++.++
T Consensus       510 ~p~~~~~~G~~yv  522 (571)
T 2ad6_A          510 SPMTYSFKGKQYI  522 (571)
T ss_dssp             CCEEEEETTEEEE
T ss_pred             eeEEEEECCEEEE
Confidence            2244567887554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.44  E-value=3.2e-05  Score=66.00  Aligned_cols=185  Identities=12%  Similarity=0.157  Sum_probs=118.5

Q ss_pred             EEEEEECCCCCEEEEEccCC--cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc
Q psy13076        134 VNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS  211 (423)
Q Consensus       134 i~~~~~sp~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      ...+.|+ ++....+.+.+|  .|+++|.++++......+.   .........+++..+..+. -++....+++.++.+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---~~~FgeGit~~g~~ly~lt-w~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---KRYFGEGISDWKDKIVGLT-WKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---TTCCEEEEEEETTEEEEEE-SSSSEEEEEETTTCCE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---CccceeEEEEeCCEEEEEE-eeCCEEEEEECccCcE
Confidence            4678888 676667777765  8999999998876554433   2232323333455555553 3444567778777777


Q ss_pred             eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccc----c-cCeEEEEECCCCCEEEEEEecCeE
Q psy13076        212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEH----S-RFVQAVRYSPSGSHFASAGFDGKV  286 (423)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~----~-~~i~~l~~s~~g~~l~s~s~dg~i  286 (423)
                      +.++....   ....+.+++.. ++.+..++.|.++|..+++........    . ..++.+.+. +|+..+..-.++.|
T Consensus       120 ~~ti~~~~---eG~glt~dg~~-L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I  194 (262)
T 3nol_A          120 VRSFNYDG---EGWGLTHNDQY-LIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKI  194 (262)
T ss_dssp             EEEEECSS---CCCCEEECSSC-EEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEEEECCC---CceEEecCCCE-EEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeE
Confidence            77665432   22334455654 444555788999998777655443321    1 335567776 67655444468899


Q ss_pred             EEEECCCccceeccccccc----------CCCeEEEEECCCCCeEEEEeCCC
Q psy13076        287 FLYDGASADLVSELGNPAH----------KGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       287 ~vwd~~~~~~~~~~~~~~~----------~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                      .+.|.++++.+..+...+-          .....++||+|+++.|+..++..
T Consensus       195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W  246 (262)
T 3nol_A          195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW  246 (262)
T ss_dssp             EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred             EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence            9999999998776643211          13468999999988888777654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.41  E-value=0.00085  Score=65.33  Aligned_cols=163  Identities=15%  Similarity=0.098  Sum_probs=94.5

Q ss_pred             CeEEEEcCCCceeeeecccccc---------CeEEEEEC-CCC---CEEEEEEecCeEEEEECCCccceecccccc----
Q psy13076        242 NTIAVFEGPPFKFKMTKQEHSR---------FVQAVRYS-PSG---SHFASAGFDGKVFLYDGASADLVSELGNPA----  304 (423)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~---------~i~~l~~s-~~g---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----  304 (423)
                      +.|..+|..+.+.....+....         ...-+... .+|   +.++.++.+|.++++|..+++.+.......    
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  357 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence            3788888777666555433211         11112232 567   467778899999999999998765443110    


Q ss_pred             ------cCCC-e--------------------------EEEEECCCCCeEEEEe--------------------------
Q psy13076        305 ------HKGG-V--------------------------YAVAWKPDGTQLLTAS--------------------------  325 (423)
Q Consensus       305 ------~~~~-i--------------------------~~l~~~~~~~~l~s~s--------------------------  325 (423)
                            ..+. +                          ..++++|+..++.+..                          
T Consensus       358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  437 (599)
T 1w6s_A          358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN  437 (599)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccce
Confidence                  0000 0                          1356777665554421                          


Q ss_pred             -------------CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCC
Q psy13076        326 -------------GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHN  392 (423)
Q Consensus       326 -------------~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~  392 (423)
                                   .++.+.-||+.+++.+-+.....+....  .+...|..+..++.++.++.+|..+++. +...+-..
T Consensus       438 ~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g--~~~tagg~vf~gt~dg~l~A~D~~tG~~-lW~~~l~~  514 (599)
T 1w6s_A          438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG--TMATAGDLVFYGTLDGYLKARDSDTGDL-LWKFKIPS  514 (599)
T ss_dssp             EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB--CEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSS
T ss_pred             eccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc--ceEecCCEEEEECCCCeEEEEECCCCCE-EEEeeCCC
Confidence                         3478999999998876555333221111  1223677777799999999999998754 33333211


Q ss_pred             -CceeEEEecCCCCeE
Q psy13076        393 -KPITALALSPDRGTV  407 (423)
Q Consensus       393 -~~v~~i~~sp~~~~l  407 (423)
                       ....-+.+..+++.+
T Consensus       515 g~~~~P~~y~~~G~qy  530 (599)
T 1w6s_A          515 GAIGYPMTYTHKGTQY  530 (599)
T ss_dssp             CCCSCCEEEEETTEEE
T ss_pred             CcEeccEEEEeCCEEE
Confidence             112235556677743

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.40  E-value=0.00015  Score=72.05  Aligned_cols=114  Identities=12%  Similarity=0.098  Sum_probs=69.2

Q ss_pred             eeeEEEE-eCCEEEEEeccc-----------eEEEEeccCCCC-ceeecc-cccCceeEEEEeCCCCeEEEec-CCCceE
Q psy13076          8 QQVSCLW-QGDYLLTVSLSG-----------FISYLDVNNPST-PIRVIK-GHNKPITALALSPDRGTVFTGS-HDGFIT   72 (423)
Q Consensus         8 ~~~~~~~-~~~~~~~~~~dg-----------~i~~~d~~~~~~-~~~~~~-gh~~~V~~l~~~~~~~~l~sg~-~D~~i~   72 (423)
                      ...++.+ +|+.++.|+.+.           .+.+||+.+..- .+..+. .+..-..++++..++++++.|+ .+..+.
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence            3566666 888888887543           688999875432 222222 2333344678888999999998 456899


Q ss_pred             EeecCCcceeec--ccCCCCCCceEEeeCCCCCeEEEecC-------CeEEEEecCCCcc
Q psy13076         73 RWNAKTEYIFAT--LPRTQRGQPIVLGGDPKGKNFLYTNG-------NSVIIRNIENPAI  123 (423)
Q Consensus        73 vW~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~  123 (423)
                      +||..+..-...  ++. .+.. ..+...++|+.+++...       +.+.++|+++...
T Consensus       269 ~yd~~t~~W~~~~~~~~-~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQV-ARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEEGGGTEEEECCCCSS-CCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             EecCcCCceeECCCCCc-cccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            999887643221  111 1111 12233457777776541       4678888876543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.40  E-value=0.0001  Score=62.95  Aligned_cols=176  Identities=15%  Similarity=0.135  Sum_probs=117.2

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeecccccCceeE--EEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCC
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITA--LALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQ   92 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~--l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~   92 (423)
                      ++.+..+.+.+|.|+++|+.++.- +..+..  .....  +++.. +++.+....++.+.++|.++.+++.++.....+.
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tgkv-~~~~l~--~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw  139 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESAQP-VWMERL--GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW  139 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCSSC-SEEEEC--TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcE-EeEECC--CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee
Confidence            466677777888999999987443 333321  23333  45433 3555566689999999999999988887654432


Q ss_pred             ceEEeeCCCCCeEEEec-CCeEEEEecCCCcccccccC--Cc---ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         93 PIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTE--HS---CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~--h~---~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                      .+.    ++++.++.++ .+.+.+.|.++.+......-  +.   ..++.+.|. +|+..+..-.+..|.+-|.++++..
T Consensus       140 GLt----~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~  214 (268)
T 3nok_A          140 GLC----YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV  214 (268)
T ss_dssp             CEE----EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE
T ss_pred             EEe----cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE
Confidence            222    4566655555 67888889888776655432  21   234566666 7776666666889999999988766


Q ss_pred             EEeeecC-----------CCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        167 LKNEFHP-----------IGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       167 ~~~~~~~-----------~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                      ....+..           .....+.||++|+++.|++.+.....
T Consensus       215 ~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~  258 (268)
T 3nok_A          215 GVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPR  258 (268)
T ss_dssp             EEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSE
T ss_pred             EEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCc
Confidence            5544431           12345789999999998888765543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.34  E-value=0.00022  Score=63.93  Aligned_cols=181  Identities=9%  Similarity=-0.037  Sum_probs=104.6

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeeccc--------------------ccCceeEEEEeC-CCCeEEEecC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG--------------------HNKPITALALSP-DRGTVFTGSH   67 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~g--------------------h~~~V~~l~~~~-~~~~l~sg~~   67 (423)
                      -++++++|+++.++..++.|..||.....  +..+..                    ....+..+++.+ ++.++++. .
T Consensus        23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d-~   99 (322)
T 2fp8_A           23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD-C   99 (322)
T ss_dssp             CEECCTTCSSEEEECTTSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE-T
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE-C
Confidence            35666678877788899999999876422  222210                    123568899998 66555543 3


Q ss_pred             CCceEEeecCCcce--eecccC-CCCCCceEEeeCC-CCCeEEEecC------------------CeEEEEecCCCcccc
Q psy13076         68 DGFITRWNAKTEYI--FATLPR-TQRGQPIVLGGDP-KGKNFLYTNG------------------NSVIIRNIENPAISD  125 (423)
Q Consensus        68 D~~i~vW~~~~~~~--~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~------------------~~~~i~~~~~~~~~~  125 (423)
                      .+.|..+|.+++.+  +..... .....+--+..++ +|..++...+                  ..+..++.++++...
T Consensus       100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  179 (322)
T 2fp8_A          100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL  179 (322)
T ss_dssp             TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred             CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence            45588888876532  111100 0111233466778 8887776533                  346666766554332


Q ss_pred             cccCCcceEEEEEECCCCCEEEEE-ccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEE
Q psy13076        126 IYTEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG  194 (423)
Q Consensus       126 ~~~~h~~~i~~~~~sp~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~  194 (423)
                      ...+ ....+.++++|++++|..+ ...+.|.+++...........+....+ ...+++.++|...++..
T Consensus       180 ~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          180 LLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             EEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred             eccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence            2211 1234568999999866555 556889999986421100001111223 67899999998655543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.29  E-value=0.00018  Score=61.40  Aligned_cols=178  Identities=11%  Similarity=0.148  Sum_probs=111.2

Q ss_pred             eEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecccccc-CeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc
Q psy13076        223 NSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSR-FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG  301 (423)
Q Consensus       223 ~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~  301 (423)
                      ..+.|+.  ..+..+.+.++.|+.+|..+.+..... .... +--.+++.. ++.....-.++.+.++|.++.+.+.++.
T Consensus        58 qGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           58 QGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            4566663  455677788889999998776655444 2121 122344432 2344444468899999999999988886


Q ss_pred             ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEe----eEEEEEecCcEEEEEeCCCcEEEEe
Q psy13076        302 NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVED----QQVSCLWQGDYLLTVSLSGFISYLD  377 (423)
Q Consensus       302 ~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~----~~~~~~~~g~~l~~~~~~~~i~~~~  377 (423)
                      ...   .-++++  ++++.|+.+..+++|.++|..+.+.+.+.........    ..+.+ .+|...+....++.|.+.|
T Consensus       134 ~~~---eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~-~dG~lyanvw~s~~I~vID  207 (268)
T 3nok_A          134 YSG---EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC-ANGVIYANIWHSSDVLEID  207 (268)
T ss_dssp             CSS---CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-ETTEEEEEETTCSEEEEEC
T ss_pred             CCC---ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE-eCCEEEEEECCCCeEEEEe
Confidence            432   224454  5677777766788999999999988777644321111    11222 2665555555678899999


Q ss_pred             cCCCCCceEEecc-------------CCCceeEEEecCCCCeEEEec
Q psy13076        378 VNNPSTPIRVIKG-------------HNKPITALALSPDRGTVFTGS  411 (423)
Q Consensus       378 ~~~~~~~~~~~~~-------------h~~~v~~i~~sp~~~~l~s~s  411 (423)
                      .+++.. +..+.-             -..-.+.||+.|+++.|...|
T Consensus       208 p~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          208 PATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            877543 222211             113578999999877665555

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.27  E-value=0.0017  Score=57.55  Aligned_cols=194  Identities=7%  Similarity=0.010  Sum_probs=107.6

Q ss_pred             eEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce
Q psy13076        133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV  212 (423)
Q Consensus       133 ~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (423)
                      ....++|+|+++++++-..++.|..||..... .....   .......+++.++++.+++...........++..+++..
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~---~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHAT---VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEE---CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEe---CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            45678999999877777678999999876532 21111   234678899999998544332222211222333344321


Q ss_pred             eccc-CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc--eeee--------eccccccCeEEEEECCCCCEEEEEE
Q psy13076        213 GEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF--KFKM--------TKQEHSRFVQAVRYSPSGSHFASAG  281 (423)
Q Consensus       213 ~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~--~~~~--------~~~~~~~~i~~l~~s~~g~~l~s~s  281 (423)
                      .... ........++..+.+ ..+++...++.|+.++....  +...        ...........+  +|++++|..+.
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d  185 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN  185 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred             EEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence            1111 111222333333332 33444445788888885432  1110        000111234455  78887665544


Q ss_pred             -ecCeEEEEECCC-ccce--ecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        282 -FDGKVFLYDGAS-ADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       282 -~dg~i~vwd~~~-~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                       ..+.|..++... ++..  ..+.   .......++++++|++.++....+.|.++|..
T Consensus       186 ~~~~~I~~~~~~~~g~~~~~~~~~---~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          186 TEKMLLLRIPVDSTDKPGEPEIFV---EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEE---ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CCCCEEEEEEeCCCCCCCccEEEe---ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence             567899999764 3211  1111   11235678899999888877777888888864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.26  E-value=0.0024  Score=57.82  Aligned_cols=244  Identities=8%  Similarity=-0.045  Sum_probs=135.8

Q ss_pred             ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCCCccccc
Q psy13076         49 PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDI  126 (423)
Q Consensus        49 ~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~  126 (423)
                      ..+|.+..++..++++-  ...|+..++........+.  ....+..+.+++..+.+.++.  ...+..++++.......
T Consensus        35 ~~~C~~~~~~~~ll~~~--~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  110 (349)
T 3v64_C           35 RRSCKALGPEPVLLFAN--RIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  110 (349)
T ss_dssp             SSCEEESSSCCEEEEEC--BSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             CCcccccccCceeEeec--ccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence            44566666644344443  3458877877654332221  223466777887665555543  56777777776554443


Q ss_pred             ccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEe
Q psy13076        127 YTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM  205 (423)
Q Consensus       127 ~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~  205 (423)
                      ..........+++.+.+..| .+-...+.|.+.+........  ...........+++.|.+..+..+............
T Consensus       111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            33333345678888755444 455556789999876543211  111112346889999987777766544312222222


Q ss_pred             ecCCcceecc-cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC
Q psy13076        206 SETGTSVGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG  284 (423)
Q Consensus       206 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg  284 (423)
                      .+ +.....+ .......+.++++|.+..+.++-+..+.|..++...................+++ ..+..+++-...+
T Consensus       189 ~d-G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~  266 (349)
T 3v64_C          189 MD-GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTK  266 (349)
T ss_dssp             TT-SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTT
T ss_pred             CC-CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCC
Confidence            22 2222222 2334567899999877766666667788888875432211112222334566777 3444445544567


Q ss_pred             eEEEEECCCccceecc
Q psy13076        285 KVFLYDGASADLVSEL  300 (423)
Q Consensus       285 ~i~vwd~~~~~~~~~~  300 (423)
                      .|..++..+++....+
T Consensus       267 ~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          267 SINSANKFTGKNQEII  282 (349)
T ss_dssp             EEEEEETTTCCSCEEE
T ss_pred             eEEEEEccCCCccEEe
Confidence            7888876666655444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.24  E-value=0.0021  Score=57.04  Aligned_cols=227  Identities=13%  Similarity=0.034  Sum_probs=121.9

Q ss_pred             CceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc
Q psy13076         48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY  127 (423)
Q Consensus        48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  127 (423)
                      .....++|++++.++++-...+.|..||.+.+.. .                               .+..         
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~-------------------------------~~~~---------   70 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-I-------------------------------HATV---------   70 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-E-------------------------------EEEC---------
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-E-------------------------------EEeC---------
Confidence            4566889999988888877788888887654211 0                               1110         


Q ss_pred             cCCcceEEEEEECCCCCEEEEEccCC--cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEe
Q psy13076        128 TEHSCAVNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM  205 (423)
Q Consensus       128 ~~h~~~i~~~~~sp~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~  205 (423)
                         ......+++.|+|+++++.....  .|..++..+++........ .......++..+++. +++....... ...++
T Consensus        71 ---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~~-~~v~d~~~g~-i~~~d  144 (306)
T 2p4o_A           71 ---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DAIFLNGITPLSDTQ-YLTADSYRGA-IWLID  144 (306)
T ss_dssp             ---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TCSCEEEEEESSSSE-EEEEETTTTE-EEEEE
T ss_pred             ---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-CccccCcccccCCCc-EEEEECCCCe-EEEEe
Confidence               12467788899888655543322  3555665555432211111 112233445444443 3333222221 12222


Q ss_pred             ecCCc-cee---------cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC-cee--eeeccccccCeEEEEECC
Q psy13076        206 SETGT-SVG---------EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP-FKF--KMTKQEHSRFVQAVRYSP  272 (423)
Q Consensus       206 ~~~~~-~~~---------~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~-~~~--~~~~~~~~~~i~~l~~s~  272 (423)
                      ...+. .+.         .........+.+  +|++.++.++-...+.|..|+... .+.  ..... .......+++++
T Consensus       145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~  221 (306)
T 2p4o_A          145 VVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDV  221 (306)
T ss_dssp             TTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBT
T ss_pred             CCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECC
Confidence            22111 110         011112234445  777777667777788999998543 111  00110 112345688999


Q ss_pred             CCCEEEEEEecCeEEEEECCCcccee--cccccccCCCeEEEEEC---CCCCeEEEEeCC
Q psy13076        273 SGSHFASAGFDGKVFLYDGASADLVS--ELGNPAHKGGVYAVAWK---PDGTQLLTASGD  327 (423)
Q Consensus       273 ~g~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~i~~l~~~---~~~~~l~s~s~d  327 (423)
                      +|+++++-...+.|.+++.. ++...  .+.  .......+++|.   |+++.|..+...
T Consensus       222 dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          222 EGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             TCCEEEECBTTCCEEEECTT-CCEEEEECGG--GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCEEEEeCCCCeEEEECCC-CCEEEEeecc--cccCCceEEEEecccCCCCEEEEECCC
Confidence            99877766667899999964 54422  222  123457899998   887776665543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.23  E-value=0.0016  Score=59.89  Aligned_cols=245  Identities=7%  Similarity=-0.074  Sum_probs=136.2

Q ss_pred             ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCCCccccc
Q psy13076         49 PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDI  126 (423)
Q Consensus        49 ~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~  126 (423)
                      .-.|.+..++ .+|+.+ ....|+..++..........  ....+..+.+++..+.++++.  ...+..++++.......
T Consensus        78 ~~~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  153 (386)
T 3v65_B           78 RRSCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  153 (386)
T ss_dssp             SSCEEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE
T ss_pred             CCeECCcccc-ceeEee-cCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE
Confidence            3445555553 333333 33578888887654332221  223466677887665555543  56777777776554443


Q ss_pred             ccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEe
Q psy13076        127 YTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM  205 (423)
Q Consensus       127 ~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~  205 (423)
                      +.........+++.+.+..| .+-...+.|.+.+........  ...........+++.|.+..+..+............
T Consensus       154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~--l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE--EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE--eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence            33333345678888755544 444556788888875433211  111112346889999988877766544312222222


Q ss_pred             ecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCe
Q psy13076        206 SETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGK  285 (423)
Q Consensus       206 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~  285 (423)
                      .+.......+.......+.++++|.+..+.++-+..+.|..++...................+++ ..+.++++-...+.
T Consensus       232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~  310 (386)
T 3v65_B          232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS  310 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE
T ss_pred             CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCe
Confidence            22222212222334457889999877766666677788998875432222122222334566777 34445555556778


Q ss_pred             EEEEECCCccceecc
Q psy13076        286 VFLYDGASADLVSEL  300 (423)
Q Consensus       286 i~vwd~~~~~~~~~~  300 (423)
                      |..++..+++....+
T Consensus       311 V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          311 INSANKFTGKNQEII  325 (386)
T ss_dssp             EEEEETTTCCSCEEE
T ss_pred             EEEEECCCCcceEEE
Confidence            888886666655544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.22  E-value=0.00025  Score=71.49  Aligned_cols=199  Identities=11%  Similarity=0.106  Sum_probs=106.0

Q ss_pred             cccC-ceeEEEEe-CCCCeEEEe-----cCCCceEEeecCCc-ceeecccCCCCCCceEEeeCCCCCeEEEecC------
Q psy13076         45 GHNK-PITALALS-PDRGTVFTG-----SHDGFITRWNAKTE-YIFATLPRTQRGQPIVLGGDPKGKNFLYTNG------  110 (423)
Q Consensus        45 gh~~-~V~~l~~~-~~~~~l~sg-----~~D~~i~vW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  110 (423)
                      +|.- .+...+|| |||++|+-+     +...+|+++|++++ +.+..   ........+.++|+|+.+++...      
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~~~~~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---KVSGTNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---CEEEECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---cccCceeeEEEecCCCEEEEEEECCCCCC
Confidence            4443 67889999 999987633     22336999999988 53211   00111123568899987777532      


Q ss_pred             CeEEEEecCCCcccc--ccc-CCcceEEEEEECCCCCEEEEEcc---CCcEEEEEcCCCceeE--EeeecCCCCCeeEEE
Q psy13076        111 NSVIIRNIENPAISD--IYT-EHSCAVNVAKYSPSGFYIASGDI---SGKVRIWDTVNKEHIL--KNEFHPIGGPIKDIA  182 (423)
Q Consensus       111 ~~~~i~~~~~~~~~~--~~~-~h~~~i~~~~~sp~~~~l~s~~~---d~~i~vwd~~~~~~~~--~~~~~~~~~~v~~v~  182 (423)
                      ..+.++++.++....  ++. ....-...+.|+|||++|+..+.   ...|.++|+.+.....  ............++.
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~  326 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ  326 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence            246667777664332  222 22234567899999998886553   3467778887642111  111111123334444


Q ss_pred             ECCCCCeEEEEEcCC-ceeeEEEeecCC--cceec-ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076        183 WSPDNQRMVVVGEGR-ERFGHVFMSETG--TSVGE-ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF  247 (423)
Q Consensus       183 ~s~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~-~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~  247 (423)
                      |+. ++.++..+... .....++..+..  ..... +..+.....--.+.+.+..++++...++...++
T Consensus       327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred             eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEE
Confidence            433 66666665443 112233333222  22233 333332222223444566667777777765444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.20  E-value=0.00055  Score=57.88  Aligned_cols=186  Identities=13%  Similarity=0.136  Sum_probs=116.0

Q ss_pred             eEEEEEECCCCCEEEEEccC--CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc
Q psy13076        133 AVNVAKYSPSGFYIASGDIS--GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT  210 (423)
Q Consensus       133 ~i~~~~~sp~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (423)
                      -...+.|++ +....+.+.+  ..|+.+|.++++.........   ........+.+..+..+. -+.....+++.++.+
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---~~fgeGi~~~~~~ly~lt-w~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP---PYFGAGIVAWRDRLIQLT-WRNHEGFVYDLATLT   96 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---TCCEEEEEEETTEEEEEE-SSSSEEEEEETTTTE
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---CcceeEEEEeCCEEEEEE-eeCCEEEEEECCcCc
Confidence            356788887 5555666664  489999999988765544432   222222233355555543 334456677777777


Q ss_pred             ceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccc-----cCeEEEEECCCCCEEEEEEecCe
Q psy13076        211 SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHS-----RFVQAVRYSPSGSHFASAGFDGK  285 (423)
Q Consensus       211 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~-----~~i~~l~~s~~g~~l~s~s~dg~  285 (423)
                      .+.++.....   ...+.+++.. ++.+..++.|.++|..+++.........     ..++.+.+. +|+.++..-.+..
T Consensus        97 ~~~ti~~~~~---Gwglt~dg~~-L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~  171 (243)
T 3mbr_X           97 PRARFRYPGE---GWALTSDDSH-LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR  171 (243)
T ss_dssp             EEEEEECSSC---CCEEEECSSC-EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred             EEEEEeCCCC---ceEEeeCCCE-EEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe
Confidence            7766654322   2334455554 4455568899999988776554433221     345566665 6665544445789


Q ss_pred             EEEEECCCccceecccccc-----------cCCCeEEEEECCCCCeEEEEeCCC
Q psy13076        286 VFLYDGASADLVSELGNPA-----------HKGGVYAVAWKPDGTQLLTASGDK  328 (423)
Q Consensus       286 i~vwd~~~~~~~~~~~~~~-----------~~~~i~~l~~~~~~~~l~s~s~d~  328 (423)
                      |.+.|.++++.+..+...+           -.....++|++|+++.|+..+.-.
T Consensus       172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w  225 (243)
T 3mbr_X          172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW  225 (243)
T ss_dssp             EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred             EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence            9999999999876654221           123568999999888777776653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.20  E-value=0.0017  Score=55.55  Aligned_cols=204  Identities=9%  Similarity=0.076  Sum_probs=121.4

Q ss_pred             ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecc-ccccCeEEEEECCCCCEEEEEEecCeEEEEECCC
Q psy13076        215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ-EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGAS  293 (423)
Q Consensus       215 ~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~  293 (423)
                      +.+-...+..++++|++..+.++...++.|...+.. .+...... ......-.+++.+++.++++.-.++.+.+++...
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            445555788999999877667777888899998876 34333321 1123456788889888777655677888888654


Q ss_pred             ccc---eeccc----ccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC---cceeeeeee-----Cc-eeEeeEEEE
Q psy13076        294 ADL---VSELG----NPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET---KSAVSEFLM-----GN-QVEDQQVSC  357 (423)
Q Consensus       294 ~~~---~~~~~----~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~---~~~i~~~~~-----~~-~~~~~~~~~  357 (423)
                      ...   .....    ....+....+++|+|+++.|.++.......+|.+..   ...+.-...     .. -.....+++
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~  180 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF  180 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence            332   11111    113456689999999997777777665666666641   111111100     00 011234445


Q ss_pred             Ee-cCcEEEEEeCCCcEEEEecCCCCCceEEec-cCC------CceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        358 LW-QGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHN------KPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       358 ~~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~h~------~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      .+ .|+.++....+..+..+|.+........+. +..      ..--.|+|.|+|+++++ ++-..++.+.
T Consensus       181 dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          181 NQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             cCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            54 455556666677888888764322222232 211      24578999999987666 5555555554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.17  E-value=0.012  Score=61.95  Aligned_cols=141  Identities=14%  Similarity=0.188  Sum_probs=85.4

Q ss_pred             CCEEEEEE----------ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeee
Q psy13076        274 GSHFASAG----------FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE  343 (423)
Q Consensus       274 g~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~  343 (423)
                      ..+++.|+          ..|.|++|+...++ ++.+.....++.+++++-- +|+ |++|- .+++++|++...+.+. 
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~-  918 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAEKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELR-  918 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEEEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEE-
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEEEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEE-
Confidence            46888887          34789999886433 2222222346788887632 454 44443 4789999998765443 


Q ss_pred             eeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEec--cCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        344 FLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK--GHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       344 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      .....-...........|++++.|+....+.++..+..+..+..+.  -+..+++++.|--++ .++.+..+|.+.+..
T Consensus       919 ~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~  996 (1158)
T 3ei3_A          919 TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQ  996 (1158)
T ss_dssp             EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEE
T ss_pred             EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEe
Confidence            1100000011222334688999999888777766554444343333  356678899987554 666678888887764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.16  E-value=0.0035  Score=55.87  Aligned_cols=235  Identities=8%  Similarity=-0.081  Sum_probs=133.3

Q ss_pred             EEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCcEEEEEcCCC---ceeEEeeecCCCCCeeE
Q psy13076        105 FLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNK---EHILKNEFHPIGGPIKD  180 (423)
Q Consensus       105 ~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~v~~  180 (423)
                      ++++.+..++..+++......+... ...+..+.|++.+..+. +-...+.|..++....   .... ............
T Consensus         4 ll~~~~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~-~~~~~~~~~p~g   81 (316)
T 1ijq_A            4 LFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD-TVISRDIQAPDG   81 (316)
T ss_dssp             EEEECBSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE-EEECSSCSCCCE
T ss_pred             EEEECCCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE-EEEeCCCCCcCE
Confidence            4556666777777776655444332 34567899998665554 4445688999987651   1111 111111134578


Q ss_pred             EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC-CeEEEEcCCCceeeeecc
Q psy13076        181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED-NTIAVFEGPPFKFKMTKQ  259 (423)
Q Consensus       181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d-~~i~~~~~~~~~~~~~~~  259 (423)
                      +++.+.+..+..+....... .+...+.......+.........+++.|.+..++++.... +.|..++...........
T Consensus        82 lavd~~~~~ly~~d~~~~~I-~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~  160 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTV-SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEE-EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             EEEeecCCeEEEEECCCCEE-EEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence            89988776666654443332 2333332221112222345678899998777655555443 678777643322211112


Q ss_pred             ccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccc-cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076        260 EHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGN-PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       260 ~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~  337 (423)
                      ........++++|+++.|..+. ..+.|..+|..... ...+.. ........++++. .+..+++-...+.|..+|..+
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT  238 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC
Confidence            2234578899999877665554 46789999976422 222211 1122346788885 466666767778899999877


Q ss_pred             cceeeee
Q psy13076        338 KSAVSEF  344 (423)
Q Consensus       338 ~~~i~~~  344 (423)
                      ++.+..+
T Consensus       239 g~~~~~i  245 (316)
T 1ijq_A          239 GSDVNLL  245 (316)
T ss_dssp             CCCCEEE
T ss_pred             CcceEEE
Confidence            7655443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.16  E-value=0.0037  Score=56.05  Aligned_cols=269  Identities=11%  Similarity=0.077  Sum_probs=135.4

Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeec--CCCCCeeEEEECCCCCeEEEEEcCCceeeEEE-eecC
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH--PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF-MSET  208 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~-~~~~  208 (423)
                      ..+..+.|.+++..++.+ .++.| +.....++.-......  .....+.+|.|.+ + .+.+++...    .++ ..+.
T Consensus        36 ~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g----~i~~S~Dg  107 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPP----IMLHTTDG  107 (327)
T ss_dssp             SCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETT----EEEEESST
T ss_pred             CcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCC----eEEEECCC
Confidence            368888998877777754 46654 2222222211111111  1134678899986 3 344444332    233 3333


Q ss_pred             CcceecccC---CCcceeEEEEecCCCeeEEEEeCCCeEEE-Ec-CCCceeeeeccccccCeEEEEECCCCCEEEEEEec
Q psy13076        209 GTSVGEISG---QSKPINSCDFKPSRPFRIITGSEDNTIAV-FE-GPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD  283 (423)
Q Consensus       209 ~~~~~~~~~---~~~~i~~~~~~~~~~~~~~s~s~d~~i~~-~~-~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d  283 (423)
                      ++....+..   ....+..+.+.+++. .++ ++.++.+.. .| ...++..  .......+..+++.|++.+++.+...
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~g~v~~S~DgG~tW~~~--~~~~~~~~~~~~~~~~~~~~~~g~~G  183 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGNGS-AEM-ITNVGAIYRTKDSGKNWQAL--VQEAIGVMRNLNRSPSGEYVAVSSRG  183 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEETTE-EEE-EETTCCEEEESSTTSSEEEE--ECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred             CCCceECccccCCCCCeEEEEEECCCC-EEE-EeCCccEEEEcCCCCCCEEe--ecCCCcceEEEEEcCCCcEEEEECCC
Confidence            554444332   223456666665543 233 344555533 33 2233322  22334567889999999888776544


Q ss_pred             CeEEEEEC--CCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC---ceeEeeEEEEE
Q psy13076        284 GKVFLYDG--ASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG---NQVEDQQVSCL  358 (423)
Q Consensus       284 g~i~vwd~--~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~---~~~~~~~~~~~  358 (423)
                      +..+..|.  .+.+.+   .. .....+..+++.|+++.++ ++.++.+++.+...++.-......   .......+...
T Consensus       184 ~~~~S~d~gG~tW~~~---~~-~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~  258 (327)
T 2xbg_A          184 SFYSTWEPGQTAWEPH---NR-TTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR  258 (327)
T ss_dssp             SEEEEECTTCSSCEEE---EC-CSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred             cEEEEeCCCCCceeEC---CC-CCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence            44444442  232222   11 2345678899999887654 456788777642222211111111   00111222233


Q ss_pred             ecCcEEEEEeCCCcEEEEecCCCCCceEEec---cCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        359 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIK---GHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       359 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~---~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      +++..+++ ..++.+++  ..+....-..+.   .+...+.++.|.+++ .++.++.+|.|..++.
T Consensus       259 ~~~~~~~~-g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          259 TPNEVWLA-GGAGALLC--SQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             SSSCEEEE-ESTTCEEE--ESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             CCCEEEEE-eCCCeEEE--eCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            34554444 44666633  222222212222   234578899998555 4666778898877653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.16  E-value=0.0001  Score=73.16  Aligned_cols=274  Identities=12%  Similarity=-0.024  Sum_probs=137.8

Q ss_pred             EEEECC-CCCEEEEEccCC-----------cEEEEEcCCCceeEEeeecC-CCCCeeEEEECCCCCeEEEEEcCCceeeE
Q psy13076        136 VAKYSP-SGFYIASGDISG-----------KVRIWDTVNKEHILKNEFHP-IGGPIKDIAWSPDNQRMVVVGEGRERFGH  202 (423)
Q Consensus       136 ~~~~sp-~~~~l~s~~~d~-----------~i~vwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~~~~~~~~~~~~~~  202 (423)
                      .+++.| ++++++.|+.+.           .+.+||..+.+......... ......++++.++++.+++.+.... ...
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK-KTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT-CEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC-ceE
Confidence            445667 888888887543           58889987765322112211 1223445778888887666553332 345


Q ss_pred             EEeecCCcceeccc-C-CCcceeEEEEecCCCeeEEEEe-CC-----CeEEEEcCCCceeeeecc----ccccCeEEEEE
Q psy13076        203 VFMSETGTSVGEIS-G-QSKPINSCDFKPSRPFRIITGS-ED-----NTIAVFEGPPFKFKMTKQ----EHSRFVQAVRY  270 (423)
Q Consensus       203 ~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~~s~s-~d-----~~i~~~~~~~~~~~~~~~----~~~~~i~~l~~  270 (423)
                      +++..+..- ..+. . ..+.-.++...+++.. ++.|+ .+     ..+.+||....+......    .....-....+
T Consensus       269 ~yd~~t~~W-~~~~~~~~~R~~~s~~~~~dg~i-yv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~  346 (656)
T 1k3i_A          269 LYDSSSDSW-IPGPDMQVARGYQSSATMSDGRV-FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  346 (656)
T ss_dssp             EEEGGGTEE-EECCCCSSCCSSCEEEECTTSCE-EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             EecCcCCce-eECCCCCccccccceEEecCCeE-EEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence            565544321 1111 1 1122234445556654 45555 33     467888865544322100    00000000123


Q ss_pred             CCCCCEEEEEEecCe---------EEEEECCCccceeccccccc-------CCCeEEEEECC-CCCeEEEEeCCC-----
Q psy13076        271 SPSGSHFASAGFDGK---------VFLYDGASADLVSELGNPAH-------KGGVYAVAWKP-DGTQLLTASGDK-----  328 (423)
Q Consensus       271 s~~g~~l~s~s~dg~---------i~vwd~~~~~~~~~~~~~~~-------~~~i~~l~~~~-~~~~l~s~s~d~-----  328 (423)
                      ..++..++.|+.+|.         +..||..+..-.........       ...-.++.|.. +++.++.|+.++     
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~  426 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  426 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence            355666666766654         56777765542221110000       11224455543 778888887543     


Q ss_pred             ------cEEEEecCCcceeeee--eeCceeEeeEEEEEecCcEEEEEeCC-----------CcEEEEecCCCCCc-eEEe
Q psy13076        329 ------TCKLWDIETKSAVSEF--LMGNQVEDQQVSCLWQGDYLLTVSLS-----------GFISYLDVNNPSTP-IRVI  388 (423)
Q Consensus       329 ------~i~iwd~~~~~~i~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~-----------~~i~~~~~~~~~~~-~~~~  388 (423)
                            .+.+||..+.......  .+..........+.++|+.++.|+.+           ..+.+||..+..-. +..+
T Consensus       427 ~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~  506 (656)
T 1k3i_A          427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN  506 (656)
T ss_dssp             CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred             cCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC
Confidence                  6788888766543221  11111112223344588888888653           45788887653210 0001


Q ss_pred             ccCCCceeEEEecCCCCeEEEecC
Q psy13076        389 KGHNKPITALALSPDRGTVFTGSH  412 (423)
Q Consensus       389 ~~h~~~v~~i~~sp~~~~l~s~s~  412 (423)
                      ......-....+.||+++++.||.
T Consensus       507 ~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          507 SIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCccccccHhhcCCCcEEEecCCC
Confidence            111111224456799999999985

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.16  E-value=0.0016  Score=54.94  Aligned_cols=177  Identities=10%  Similarity=0.082  Sum_probs=111.8

Q ss_pred             CCEEEEEeccc--eEEEEeccCCCCceeecccccCcee--EEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCC
Q psy13076         16 GDYLLTVSLSG--FISYLDVNNPSTPIRVIKGHNKPIT--ALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRG   91 (423)
Q Consensus        16 ~~~~~~~~~dg--~i~~~d~~~~~~~~~~~~gh~~~V~--~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~   91 (423)
                      +.+..+.+.+|  .|+.+|+.++ +....+.-.. ...  .+++. .+++......++.+.++|.++.+++.++.....+
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tg-kv~~~~~l~~-~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G  107 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETG-RILQRAEVPP-PYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG  107 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTC-CEEEEEECCT-TCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC
T ss_pred             CEEEEECCCCCCceEEEEECCCC-CEEEEEeCCC-CcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc
Confidence            44455555543  9999999874 4444433211 222  23433 2445556678999999999999998888765433


Q ss_pred             CceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccC--Cc---ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076         92 QPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTE--HS---CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        92 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~--h~---~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                      -  .+.  ++++.++.+ .++.+.+.|.++.+......-  +.   ..++.+.+. +|+..+..-.+..|.+.|.++++.
T Consensus       108 w--glt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V  182 (243)
T 3mbr_X          108 W--ALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKV  182 (243)
T ss_dssp             C--EEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE
T ss_pred             e--EEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE
Confidence            2  222  345544444 456888899888776655432  11   234455554 677666665678999999998887


Q ss_pred             eEEeeecC-----------CCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        166 ILKNEFHP-----------IGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       166 ~~~~~~~~-----------~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                      .....+..           .....+.||++|+++.|++.+.....+
T Consensus       183 ~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~  228 (243)
T 3mbr_X          183 VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPML  228 (243)
T ss_dssp             EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcE
Confidence            65544332           123457899999999999888665543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.15  E-value=0.013  Score=61.66  Aligned_cols=306  Identities=11%  Similarity=0.064  Sum_probs=149.2

Q ss_pred             cCCeEEEEecCCCcccccc-cCCcceEEEEEECCC------CCEEEEEcc-CCcEEEEEcCCCceeEEeeecCCCCCeeE
Q psy13076        109 NGNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPS------GFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIGGPIKD  180 (423)
Q Consensus       109 ~~~~~~i~~~~~~~~~~~~-~~h~~~i~~~~~sp~------~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~v~~  180 (423)
                      .++.+.+..++++.+.... ..-...|.++.+.|.      +.++|.|.. |++++|+++.+.+.+....+.. .....+
T Consensus       530 ~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~s  608 (1158)
T 3ei3_A          530 VGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRS  608 (1158)
T ss_dssp             ETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEE
T ss_pred             ECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcE
Confidence            4566666655544322211 112357999998863      479999986 9999999998755543333321 123344


Q ss_pred             EEECC-CCCeEEEEEcCCceeeEE-EeecCCcce--ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee
Q psy13076        181 IAWSP-DNQRMVVVGEGRERFGHV-FMSETGTSV--GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM  256 (423)
Q Consensus       181 v~~s~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~  256 (423)
                      +.+.. ++...+.++-.++..... ++..++...  +...--..++.-..+...+...+.+++ ++...+|.... ++..
T Consensus       609 i~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~-~l~~  686 (1158)
T 3ei3_A          609 ILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNH-KLVF  686 (1158)
T ss_dssp             EEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESSS-SEEE
T ss_pred             EEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcCC-ceEE
Confidence            43321 233334455444433222 222222211  111111234544444433333333333 33333343221 2222


Q ss_pred             eccccccCeEEEEECCCC--CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC-------
Q psy13076        257 TKQEHSRFVQAVRYSPSG--SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD-------  327 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-------  327 (423)
                      ........-....|+...  .-++. ..++.++|..+..-+.......+ -...+..++++|+.+.++.+..+       
T Consensus       687 s~l~~~~v~~~~~F~se~~~~g~v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~  764 (1158)
T 3ei3_A          687 SNVNLKEVNYMCPLNSDGYPDSLAL-ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTS  764 (1158)
T ss_dssp             EEBSSSCCCEEEEECCSSSTTEEEE-ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSS
T ss_pred             eccChHHhceEeccCcccCCCcEEE-EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccc
Confidence            211111112334564322  22443 33566888776433222111111 23456778888876654433211       


Q ss_pred             ------------------------------------------CcEEEEecCCcceeeeeeeCceeEeeEEEEE-e---cC
Q psy13076        328 ------------------------------------------KTCKLWDIETKSAVSEFLMGNQVEDQQVSCL-W---QG  361 (423)
Q Consensus       328 ------------------------------------------~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~-~---~g  361 (423)
                                                                ..|++.|..+.+.+..+.........++... .   ..
T Consensus       765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~  844 (1158)
T 3ei3_A          765 GGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPN  844 (1158)
T ss_dssp             SSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCC
T ss_pred             cccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCC
Confidence                                                      2367778777777666654443333333322 2   24


Q ss_pred             cEEEEEe----------CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        362 DYLLTVS----------LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       362 ~~l~~~~----------~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      .+++.|+          ..|.|+++++...+...-.-....++|++++=- +|++|+..|  +.|++|+..
T Consensus       845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~ig--~~l~vy~l~  912 (1158)
T 3ei3_A          845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASIN--STVRLYEWT  912 (1158)
T ss_dssp             CEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEET--TEEEEEEEC
T ss_pred             EEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEcC--CEEEEEECC
Confidence            6788776          346788888864221111122346788888744 455555444  678888763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.09  E-value=0.0058  Score=56.14  Aligned_cols=234  Identities=7%  Similarity=-0.098  Sum_probs=135.3

Q ss_pred             eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEE
Q psy13076        104 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA  182 (423)
Q Consensus       104 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~  182 (423)
                      .++++....++..+++.........+. ..+..++|++.+..|. +-...+.|..++........ ..... ......++
T Consensus        89 ~l~~~~~~~I~~i~~~~~~~~~~~~~~-~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~~~~-~~~p~gla  165 (386)
T 3v65_B           89 VLLFANRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VVSTG-LESPGGLA  165 (386)
T ss_dssp             EEEEECBSCEEEECTTSCCCEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-EECSS-CSCCCCEE
T ss_pred             eeEeecCccceeeccCCCcEEEEecCC-CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-EEeCC-CCCccEEE
Confidence            455566667777777665554444333 3467899998655554 44456889999886544221 11111 12346788


Q ss_pred             ECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC-CeEEEEcCCCceeeeecccc
Q psy13076        183 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED-NTIAVFEGPPFKFKMTKQEH  261 (423)
Q Consensus       183 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d-~~i~~~~~~~~~~~~~~~~~  261 (423)
                      +.+.+..+..+...... ..+...+.......+.........+++.|.+..+.++-... +.|..++.............
T Consensus       166 vd~~~g~lY~~d~~~~~-I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~  244 (386)
T 3v65_B          166 VDWVHDKLYWTDSGTSR-IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH  244 (386)
T ss_dssp             EETTTTEEEEEETTTTE-EEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             EEeCCCeEEEEcCCCCe-EEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC
Confidence            88877766665544332 12222222221122223345678899998877766665555 67887775432222222223


Q ss_pred             ccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076        262 SRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA  340 (423)
Q Consensus       262 ~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~  340 (423)
                      ......++++|++..|..+. ..+.|..++...... ..+.. .......++++ ..+..+++-...+.|..+|..+++.
T Consensus       245 ~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          245 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence            34568899998776655544 467899998754322 22211 12345678888 4556666767778888888666655


Q ss_pred             eeee
Q psy13076        341 VSEF  344 (423)
Q Consensus       341 i~~~  344 (423)
                      +..+
T Consensus       322 ~~~i  325 (386)
T 3v65_B          322 QEII  325 (386)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            4443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=0.0031  Score=58.85  Aligned_cols=202  Identities=9%  Similarity=0.057  Sum_probs=114.0

Q ss_pred             eEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc--eeeEEEeecCC
Q psy13076        133 AVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE--RFGHVFMSETG  209 (423)
Q Consensus       133 ~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~--~~~~~~~~~~~  209 (423)
                      ....++++| ++..|..++..+.|+.+|.........   .........++|+++++.++++.....  ....++....+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~---~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV---YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEE---ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEE---ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence            456788998 466666666658899999876543221   112345688999999997777664322  11122222222


Q ss_pred             cce--ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee-eeeccccccCeEEEEECCCCCEE-EEEEecCe
Q psy13076        210 TSV--GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-KMTKQEHSRFVQAVRYSPSGSHF-ASAGFDGK  285 (423)
Q Consensus       210 ~~~--~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l-~s~s~dg~  285 (423)
                      ...  ..+. .......++++|....+.++-..++.|..++...... .............++|+|+|++| ++-...+.
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence            111  1121 2234567888985444455655678899998654433 11111122346789999999955 44445778


Q ss_pred             EEEEECCC--ccc--eecccc----c---------ccCCCeE-EEEEC--------CCCCeEEEEeCCCcEEEEecCCcc
Q psy13076        286 VFLYDGAS--ADL--VSELGN----P---------AHKGGVY-AVAWK--------PDGTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       286 i~vwd~~~--~~~--~~~~~~----~---------~~~~~i~-~l~~~--------~~~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      |..++...  ++.  ...+..    .         +.-.... .++..        ++|.+.++-...+.|+.++. .+.
T Consensus       294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~  372 (430)
T 3tc9_A          294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGR  372 (430)
T ss_dssp             EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSE
T ss_pred             EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCc
Confidence            99877542  211  111100    0         0111233 45553        45677777667778888883 443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.08  E-value=0.0041  Score=58.12  Aligned_cols=237  Identities=10%  Similarity=0.079  Sum_probs=123.9

Q ss_pred             ceeEEEEeCC--CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCC----e-EEEEecCCC
Q psy13076         49 PITALALSPD--RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGN----S-VIIRNIENP  121 (423)
Q Consensus        49 ~V~~l~~~~~--~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~i~~~~~~  121 (423)
                      ....++|+|+  +..|+.+...+.|+.+|.+++.+.....  ....+..+..+++|++++...++    . +...+.+.+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            4568999984  3444444333899999998776654332  23446677889999855554321    2 222222211


Q ss_pred             ccc-ccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        122 AIS-DIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       122 ~~~-~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                      ... ..+. .-.....++++| +|.+.++-..++.|+.+|..++..............-..++|+|+++.|.++......
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            110 1111 112345678899 6766656556788999998755441111111111222469999999977776554443


Q ss_pred             eeEEEeec--CCcc--eecccC---------------CCcceeEEEE---------ecCCCeeEEEEeCCCeEEEEcCCC
Q psy13076        200 FGHVFMSE--TGTS--VGEISG---------------QSKPINSCDF---------KPSRPFRIITGSEDNTIAVFEGPP  251 (423)
Q Consensus       200 ~~~~~~~~--~~~~--~~~~~~---------------~~~~i~~~~~---------~~~~~~~~~s~s~d~~i~~~~~~~  251 (423)
                      . ..+..+  ++..  ...+.+               .......+++         .+.+. +.++-...+.|+.++.. 
T Consensus       297 I-~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~-  373 (433)
T 4hw6_A          297 I-YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPE-  373 (433)
T ss_dssp             E-EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECTT-
T ss_pred             E-EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECCC-
Confidence            2 222222  1110  001111               1223556777         44433 34444556778888732 


Q ss_pred             ceeeeec-----------------cccccCeEEEEEC-CCCCEEEEEEecCeEEEEEC
Q psy13076        252 FKFKMTK-----------------QEHSRFVQAVRYS-PSGSHFASAGFDGKVFLYDG  291 (423)
Q Consensus       252 ~~~~~~~-----------------~~~~~~i~~l~~s-~~g~~l~s~s~dg~i~vwd~  291 (423)
                      .......                 .........++++ ++|.++++=...+.|+.++.
T Consensus       374 G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          374 GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            2221110                 0112346778888 55655555445667777664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.07  E-value=0.0069  Score=55.93  Aligned_cols=239  Identities=8%  Similarity=-0.076  Sum_probs=136.2

Q ss_pred             eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEEEcCCCce--eEEeeecCCCCCeeE
Q psy13076        104 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVNKEH--ILKNEFHPIGGPIKD  180 (423)
Q Consensus       104 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vwd~~~~~~--~~~~~~~~~~~~v~~  180 (423)
                      .++++....++..+++......... ....+..++|++.+..|.-.+ ..+.|+.+++.....  ...............
T Consensus        85 ~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           85 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            4556677788888887665544433 345678999998665555544 467888888754210  001111111234678


Q ss_pred             EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeC-CCeEEEEcCCCceeeeecc
Q psy13076        181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSE-DNTIAVFEGPPFKFKMTKQ  259 (423)
Q Consensus       181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~-d~~i~~~~~~~~~~~~~~~  259 (423)
                      +++.+.+..|..+...... ..+...+.......+.........+++.|.+.++..+-.. .+.|...+...........
T Consensus       164 lavD~~~~~lY~~d~~~~~-I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGT-VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EEEETTTTEEEEEETTTTE-EEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred             EEEEecCCceEEEECCCCe-EEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence            8998866666665544332 2233333222222223344557889999977665555433 3677777654322222222


Q ss_pred             ccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        260 EHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       260 ~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      ..-.....|+++|++..|..+. ..+.|..+|....................++++. .+..+.+-...+.|..+|..++
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            2334678899998877666554 4678999997543322222111223445678773 4456666667788999997777


Q ss_pred             ceeeeee
Q psy13076        339 SAVSEFL  345 (423)
Q Consensus       339 ~~i~~~~  345 (423)
                      +.+..+.
T Consensus       322 ~~~~~i~  328 (400)
T 3p5b_L          322 SDVNLLA  328 (400)
T ss_dssp             CCCEEEE
T ss_pred             CceEEEe
Confidence            6655543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.07  E-value=0.0051  Score=57.42  Aligned_cols=201  Identities=13%  Similarity=0.103  Sum_probs=112.8

Q ss_pred             eEEEEEECCC--CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC--ceeeEEEeecC
Q psy13076        133 AVNVAKYSPS--GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR--ERFGHVFMSET  208 (423)
Q Consensus       133 ~i~~~~~sp~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~--~~~~~~~~~~~  208 (423)
                      ....++++|+  +..|..++..+.|+.+|..++.....   .........++|+++|. ++++....  .....+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~---~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK---TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE---CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe---ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence            4567899994  44555555558899999866553321   11234578999999999 55544321  11122222211


Q ss_pred             -CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee-e-eeccccccCeEEEEECCCCCEEEEE-EecC
Q psy13076        209 -GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-K-MTKQEHSRFVQAVRYSPSGSHFASA-GFDG  284 (423)
Q Consensus       209 -~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~-~-~~~~~~~~~i~~l~~s~~g~~l~s~-s~dg  284 (423)
                       +...............++++|....+.++-..++.|+.++...... . ............++++|+|++|..+ ...+
T Consensus       216 ~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          216 SGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             GTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             CCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence             1110011112234566788884444344555677898888653333 1 1111112223469999999955444 4567


Q ss_pred             eEEEEECC--Cccce--ecccc----c---------ccCCCeEEEEE---------CCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        285 KVFLYDGA--SADLV--SELGN----P---------AHKGGVYAVAW---------KPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       285 ~i~vwd~~--~~~~~--~~~~~----~---------~~~~~i~~l~~---------~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      .|+.++..  ++...  ..+..    .         +.-.....+++         .++|++.++-...+.|+.++. ++
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            89998754  22211  11100    0         11234678999         788888888777889999985 44

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.98  E-value=0.0091  Score=53.99  Aligned_cols=234  Identities=6%  Similarity=-0.105  Sum_probs=133.2

Q ss_pred             eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEE-ccCCcEEEEEcCCCceeEEeeecCCCCCeeEEE
Q psy13076        104 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA  182 (423)
Q Consensus       104 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~  182 (423)
                      .++++....+...+++.........+. ..+..++|++.+..|.-. ...+.|..++......... .... ......++
T Consensus        46 ~ll~~~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-~~~~-~~~p~gla  122 (349)
T 3v64_C           46 VLLFANRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-VSTG-LESPGGLA  122 (349)
T ss_dssp             EEEEECBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-ECSS-CSCCCEEE
T ss_pred             eeEeecccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE-EeCC-CCCccEEE
Confidence            344455555666666554444333333 346789999865555544 4568898898865442211 1111 12346889


Q ss_pred             ECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC-CeEEEEcCCCceeeeecccc
Q psy13076        183 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED-NTIAVFEGPPFKFKMTKQEH  261 (423)
Q Consensus       183 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d-~~i~~~~~~~~~~~~~~~~~  261 (423)
                      +.+.+..+..+...... ..+...+.......+.........+++.|.+..+..+-... +.|..++.............
T Consensus       123 vd~~~g~ly~~d~~~~~-I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~  201 (349)
T 3v64_C          123 VDWVHDKLYWTDSGTSR-IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH  201 (349)
T ss_dssp             EETTTTEEEEEETTTTE-EEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSS
T ss_pred             EecCCCeEEEEcCCCCe-EEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECC
Confidence            98877766665544332 22333332222222223345678899999777666665555 77888765432222222223


Q ss_pred             ccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076        262 SRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA  340 (423)
Q Consensus       262 ~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~  340 (423)
                      ......++++|++..|..+. ..+.|..++...... ..+.. .......++++ ..+...++-...+.|..+|..+++.
T Consensus       202 ~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          202 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEe-CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCc
Confidence            34568899998777665554 467899998754322 22211 12345678888 4556666666677888888666654


Q ss_pred             eeee
Q psy13076        341 VSEF  344 (423)
Q Consensus       341 i~~~  344 (423)
                      +..+
T Consensus       279 ~~~i  282 (349)
T 3v64_C          279 QEII  282 (349)
T ss_dssp             CEEE
T ss_pred             cEEe
Confidence            4443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.94  E-value=0.00091  Score=67.40  Aligned_cols=192  Identities=11%  Similarity=0.036  Sum_probs=107.0

Q ss_pred             ceeEEEEe-cCCCeeEEEEeCCC----eEEEEcCCCc-eeeeeccccccCeEEEEECCCCCEEEEEEec-----CeEEEE
Q psy13076        221 PINSCDFK-PSRPFRIITGSEDN----TIAVFEGPPF-KFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-----GKVFLY  289 (423)
Q Consensus       221 ~i~~~~~~-~~~~~~~~s~s~d~----~i~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-----g~i~vw  289 (423)
                      .+....|+ |++..+..+.+.+|    .|++++.... ....  .........++|+|||+.|+....|     ..|+.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            46678899 99987666655443    4888887654 3110  0011113468899999988877775     368888


Q ss_pred             ECCCccce--ecccccccCCCeEEEEECCCCCeEEEEeC---CCcEEEEecCCcc-ee--eeeeeCceeEeeEEEEE-ec
Q psy13076        290 DGASADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASG---DKTCKLWDIETKS-AV--SEFLMGNQVEDQQVSCL-WQ  360 (423)
Q Consensus       290 d~~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s~---d~~i~iwd~~~~~-~i--~~~~~~~~~~~~~~~~~-~~  360 (423)
                      ++.++...  ..+.. ........+.|+|||++|+..+.   ...|.++|+.++. ..  ..+....  .....+.. ..
T Consensus       253 ~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~s~~~~~  329 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE--KGVRYDVQMHG  329 (751)
T ss_dssp             ETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC--TTCCEEEEEET
T ss_pred             ECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC--CCceEEEeeee
Confidence            88765422  11111 12234568899999998886653   3358888987652 11  2221111  11122232 34


Q ss_pred             CcEEEEEeCC---C--cEEEEecCCCCCceEE-eccCCC--ceeEEEecCCCCeEEEecCCCcEEEe
Q psy13076        361 GDYLLTVSLS---G--FISYLDVNNPSTPIRV-IKGHNK--PITALALSPDRGTVFTGSHDGFITRW  419 (423)
Q Consensus       361 g~~l~~~~~~---~--~i~~~~~~~~~~~~~~-~~~h~~--~v~~i~~sp~~~~l~s~s~D~~i~~W  419 (423)
                      |+.|+..+..   +  .|..++..++... .. +..|..  .+.++++. .+.++++...|+..++|
T Consensus       330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~-~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          330 TSHLVILTNEGGAVNHKLLIAPRGQPSDW-SHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             TTEEEEEECTTTCTTCEEEEEETTSTTCC-CCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             CCEEEEEeCCCCCCCcEEEEEcCCCcccc-eeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence            7766655432   2  5667776542221 12 223333  34555554 23345666777765554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=0.0044  Score=57.86  Aligned_cols=154  Identities=15%  Similarity=0.231  Sum_probs=88.9

Q ss_pred             eeEEEECC-CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCC----eEEEEcCCC-
Q psy13076        178 IKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN----TIAVFEGPP-  251 (423)
Q Consensus       178 v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~----~i~~~~~~~-  251 (423)
                      ...++++| ++..|.++...  .....++.+.+ .+..+.........+++++++..++++...++    .+..++... 
T Consensus       139 P~~lavdp~~~g~Lyv~d~~--~~I~~id~~~~-~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~  215 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQ--HPTRLIDFEKE-YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG  215 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBT--EEEEEEETTTT-EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred             CCEEEECCCCCCeEEEEeCC--CcEEEEECCCC-EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence            46789998 46666665443  22233333332 33333345556788999999886555554322    233333211 


Q ss_pred             ceeeeeccccccCeEEEEECC-CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC-eEEEEeCCCc
Q psy13076        252 FKFKMTKQEHSRFVQAVRYSP-SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLTASGDKT  329 (423)
Q Consensus       252 ~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s~s~d~~  329 (423)
                      +.....+. .......++++| +|.++++-..++.|..++...+........ ........++|+|+|+ ++++-...+.
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc-CCCCcceeEEEcCCCCEEEEEECCCCE
Confidence            11001111 123346688999 666666655678999999876543211111 1224568999999999 4555566788


Q ss_pred             EEEEecC
Q psy13076        330 CKLWDIE  336 (423)
Q Consensus       330 i~iwd~~  336 (423)
                      |..++..
T Consensus       294 I~~~~~d  300 (430)
T 3tc9_A          294 ILRSDYD  300 (430)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeCC
Confidence            9998765

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.89  E-value=0.023  Score=55.61  Aligned_cols=399  Identities=11%  Similarity=0.008  Sum_probs=187.6

Q ss_pred             EEEEeCCEEEEEe-ccceEEEEeccCCCCceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCC
Q psy13076         11 SCLWQGDYLLTVS-LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus        11 ~~~~~~~~~~~~~-~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      +++++++.|..+. ..+.|..++++........+..--.....|++.+.++ +.++-...+.|.+-+.+..... .+...
T Consensus        46 d~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~-~l~~~  124 (619)
T 3s94_A           46 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLFWQ  124 (619)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS
T ss_pred             EEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE-EEEeC
Confidence            3344455555443 4578888887643222223333335688999999554 5666677889999998765322 12112


Q ss_pred             CCCCceEEeeCCCCCeEEEec-C--CeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc-CCcEEEEEcCCCc
Q psy13076         89 QRGQPIVLGGDPKGKNFLYTN-G--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKE  164 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~--~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~-d~~i~vwd~~~~~  164 (423)
                      .-..+-.+..+|.+..+.++. +  ..+...+++...........-...+.+++++++..|..++. .+.|...|.....
T Consensus       125 ~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~  204 (619)
T 3s94_A          125 ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN  204 (619)
T ss_dssp             SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE
T ss_pred             CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc
Confidence            223344456667654444443 3  34444455433222222223345688999997666665544 5678888875432


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcc-----------------------
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP-----------------------  221 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  221 (423)
                      ...... ... .....+++..+  .+..+ +-........+..+++....+......                       
T Consensus       205 ~~~~~~-~~~-~~P~gi~~~~~--~ly~t-d~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~n  279 (619)
T 3s94_A          205 RQAVVK-GSL-PHPFALTLFED--ILYWT-DWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDN  279 (619)
T ss_dssp             EC-----------CCCEEESSS--EEEEE-CTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTG
T ss_pred             cEEEEe-CCC-CCceEEEEeCC--EEEEe-cCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCC
Confidence            211000 011 11234555544  33332 211111222222222211111100000                       


Q ss_pred             --ee-EEEEecC-------------------------CCeeEEEEeCCCeEEEEcCCCc--eeeeeccccccCeEEEEEC
Q psy13076        222 --IN-SCDFKPS-------------------------RPFRIITGSEDNTIAVFEGPPF--KFKMTKQEHSRFVQAVRYS  271 (423)
Q Consensus       222 --i~-~~~~~~~-------------------------~~~~~~s~s~d~~i~~~~~~~~--~~~~~~~~~~~~i~~l~~s  271 (423)
                        .. -|..+|.                         .++ ++.+. .+.|+..+....  ............+..++|+
T Consensus       280 g~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~-Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d  357 (619)
T 3s94_A          280 GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATEL-LLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYD  357 (619)
T ss_dssp             GGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEE-EEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEE
T ss_pred             CcccceEECCCCCCCceEeCCchheecccCcccCCCCceE-EEEEc-ccceEEEecCCCccceeEEeccccCccEEEEEE
Confidence              00 0111111                         001 11111 122333322111  1000011112346789999


Q ss_pred             CCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCC-CCeEEEEeCCCcEEEEecCCcceeeeeeeCce
Q psy13076        272 PSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPD-GTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ  349 (423)
Q Consensus       272 ~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~  349 (423)
                      +.+..|..+. ..+.|+.++.........+.  .......++++++. ++...+-+..+.|.+.++.... ...+....-
T Consensus       358 ~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~--~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l  434 (619)
T 3s94_A          358 PVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT--AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDL  434 (619)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTC
T ss_pred             cCCCeEEEEeCCCCeEEEEEcCCCccEEEEE--CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCC
Confidence            8665555444 57788888876433222221  12245678999874 4555666667889999886543 222221111


Q ss_pred             eEeeEEEEEecCcEEEEEeC--CCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEE-EecCCCcEEEeeC
Q psy13076        350 VEDQQVSCLWQGDYLLTVSL--SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TGSHDGFITRWNA  421 (423)
Q Consensus       350 ~~~~~~~~~~~g~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~-s~s~D~~i~~W~~  421 (423)
                      .....+.+.+...+|.....  ...|...+...... .....+.-...+.|++.++++.|. +-+..+.|...++
T Consensus       435 ~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~  508 (619)
T 3s94_A          435 EEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT  508 (619)
T ss_dssp             CSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred             CCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence            22344555554333333322  24566655543222 122233345678999998666554 4455566766654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.88  E-value=0.024  Score=55.54  Aligned_cols=378  Identities=11%  Similarity=0.054  Sum_probs=178.7

Q ss_pred             eccceEEEEeccCCCCceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCC
Q psy13076         23 SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPK  101 (423)
Q Consensus        23 ~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (423)
                      +....|+..|++........+...-+.+..++|++.+. +.++-...+.|+.++.+.......+.......+--++.++.
T Consensus        15 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~   94 (619)
T 3s94_A           15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   94 (619)
T ss_dssp             ECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred             eccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence            45678999998753212222233344567899998655 45565667889999887542111111111223444666775


Q ss_pred             CCeEEEec--CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc--CCcEEEEEcCCCceeEEeeecCCCCC
Q psy13076        102 GKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPIGGP  177 (423)
Q Consensus       102 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~  177 (423)
                      ++.+.++.  .+.+.+.+++.........+.-.....+++.|.+.+|.-.+.  .+.|...++....... . .......
T Consensus        95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~-l-~~~~~~~  172 (619)
T 3s94_A           95 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-I-INSEIYW  172 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-E-ECSSCSS
T ss_pred             CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE-E-EeCCCCC
Confidence            55555443  457777777654433333334455678899997555555543  3556665654322111 1 1111234


Q ss_pred             eeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce----
Q psy13076        178 IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK----  253 (423)
Q Consensus       178 v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~----  253 (423)
                      ...++++++++.+..+-..... ......+.......+.+.......+++..+  .+.++-...+.|...+....+    
T Consensus       173 P~Glald~~~~~LY~aD~~~~~-I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          173 PNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTCC-EEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             CcEEEEEccCCEEEEEeCCCCe-EEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEE
Confidence            5789999988877776544332 222332221111111112222334444433  333343344555555432111    


Q ss_pred             ----------eee-----eccc-c-----ccCe--EE---------EEECCCC---------------CEEEEEEecCeE
Q psy13076        254 ----------FKM-----TKQE-H-----SRFV--QA---------VRYSPSG---------------SHFASAGFDGKV  286 (423)
Q Consensus       254 ----------~~~-----~~~~-~-----~~~i--~~---------l~~s~~g---------------~~l~s~s~dg~i  286 (423)
                                +..     +... +     ....  .|         -+..|.|               .+|+.+ ..+.|
T Consensus       250 i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i  328 (619)
T 3s94_A          250 IHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDL  328 (619)
T ss_dssp             CCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCE
T ss_pred             EecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccce
Confidence                      000     0000 0     0000  01         1112221               133333 34566


Q ss_pred             EEEECCCcccee-cccccccCCCeEEEEECCCCC-eEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEE
Q psy13076        287 FLYDGASADLVS-ELGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL  364 (423)
Q Consensus       287 ~vwd~~~~~~~~-~~~~~~~~~~i~~l~~~~~~~-~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l  364 (423)
                      +..++....... .+.. ..-..+.+++|++.+. .+++-...+.|+.++...... ..+....-.....+++.|.+..|
T Consensus       329 ~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~p~GlAvD~~~~~l  406 (619)
T 3s94_A          329 RRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-QFVVTAQIAHPDGIAVDWVARNL  406 (619)
T ss_dssp             EEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEETTTTEE
T ss_pred             EEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-EEEEECCCCCcCceEEecccCcE
Confidence            666665443211 1111 1124467899998554 444545577898888865432 22221111123345666655555


Q ss_pred             EEE-eCCCcEEEEecCCCCCceEEe-ccCCCceeEEEecCCCCe-EEEe
Q psy13076        365 LTV-SLSGFISYLDVNNPSTPIRVI-KGHNKPITALALSPDRGT-VFTG  410 (423)
Q Consensus       365 ~~~-~~~~~i~~~~~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~-l~s~  410 (423)
                      ..+ +..+.|.+.+......  ..+ ..--...++|++.|...+ +.|-
T Consensus       407 Y~tD~~~~~I~v~~~~G~~~--~~l~~~~l~~P~~iavdp~~G~ly~tD  453 (619)
T 3s94_A          407 YWTDTGTDRIEVTRLNGTMR--KILISEDLEEPRAIVLDPMVGYMYWTD  453 (619)
T ss_dssp             EEEETTTTEEEEEETTSCSC--EEEECTTCCSEEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCcEEEEeCCCCeE--EEEEECCCCCeeeEEEEcCCCcEEEec
Confidence            444 4566788887765432  222 223356789999997444 4443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.84  E-value=0.028  Score=56.54  Aligned_cols=237  Identities=9%  Similarity=-0.067  Sum_probs=131.1

Q ss_pred             eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCce--eEEeeecCCCCCeeE
Q psy13076        104 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEH--ILKNEFHPIGGPIKD  180 (423)
Q Consensus       104 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~v~~  180 (423)
                      .++++....++..+++......+..+ ...+..++|++....| .+-...+.|+.+++.....  ...............
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  475 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             ccccccccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence            45556666666666665544444333 3456789999855444 4444567888888764211  001111111234568


Q ss_pred             EEECCCCCeEEEEEcCCceeeEEEeecCCcceec-ccCCCcceeEEEEecCCCeeEEEEeCC-CeEEEEcCCCceeeeec
Q psy13076        181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE-ISGQSKPINSCDFKPSRPFRIITGSED-NTIAVFEGPPFKFKMTK  258 (423)
Q Consensus       181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~s~s~d-~~i~~~~~~~~~~~~~~  258 (423)
                      |++.+.++.|..+...... ..+...+ +..... +.........+++.|....+.++-... +.|...+..........
T Consensus       476 LAvD~~~~~LY~tD~~~~~-I~v~~ld-G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv  553 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGT-VSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  553 (791)
T ss_dssp             EEEETTTTEEEEEETTTTE-EEEEETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             eeeeecCCcEEEEecCCCe-EEEEeCC-CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence            9999888777766554433 2333333 222222 223445678899999876655554333 67777775543333222


Q ss_pred             cccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCC
Q psy13076        259 QEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIET  337 (423)
Q Consensus       259 ~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~  337 (423)
                      .........|++++.+..|..+. ..+.|...++........+..........+|++.. +.++++-...+.|...|..+
T Consensus       554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~t  632 (791)
T 3m0c_C          554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT  632 (791)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred             eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCC
Confidence            33335678899998777665554 45689999875433222221111223355777643 34555555667888888766


Q ss_pred             cceeeee
Q psy13076        338 KSAVSEF  344 (423)
Q Consensus       338 ~~~i~~~  344 (423)
                      ++.+..+
T Consensus       633 G~~~~~l  639 (791)
T 3m0c_C          633 GSDVNLL  639 (791)
T ss_dssp             CCCCEEE
T ss_pred             CcceEEe
Confidence            6544433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.81  E-value=0.016  Score=51.51  Aligned_cols=237  Identities=10%  Similarity=-0.040  Sum_probs=125.9

Q ss_pred             EEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCC-CCeEEEecCCCceEEeecCCcceeecccCCCCCCceEE
Q psy13076         18 YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVL   96 (423)
Q Consensus        18 ~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~-~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~   96 (423)
                      +|+.+ ....|+.+|++........+-..-..+..++|.+. +.+.++-...+.|+.++.+.......          .+
T Consensus         6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~----------~~   74 (318)
T 3sov_A            6 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN----------VV   74 (318)
T ss_dssp             EEEEE-CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE----------EE
T ss_pred             EEEEE-ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE----------EE
Confidence            44443 35789999997643222222222335668999985 45566666778888887765311000          00


Q ss_pred             eeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCC-CEEEEEccCCcEEEEEcCCCceeEEeeecCCC
Q psy13076         97 GGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIG  175 (423)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  175 (423)
                      .                               ........+++.+.+ .+..+-...+.|.+.+.........  .....
T Consensus        75 ~-------------------------------~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l--~~~~~  121 (318)
T 3sov_A           75 V-------------------------------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL--FWQEL  121 (318)
T ss_dssp             E-------------------------------ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSC
T ss_pred             c-------------------------------CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE--EeCCC
Confidence            0                               000123356666533 3334444567788888754322111  11122


Q ss_pred             CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecc-cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI-SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF  254 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~  254 (423)
                      .....+++.|.+..+..+..+..........+ +.....+ .......+.++++|.+..+.++-+..+.|..++......
T Consensus       122 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~  200 (318)
T 3sov_A          122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR  200 (318)
T ss_dssp             SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce
Confidence            34578999997776666543321112222222 2222222 233456788999997776566666778888887543222


Q ss_pred             eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecc
Q psy13076        255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL  300 (423)
Q Consensus       255 ~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~  300 (423)
                      .............+++.. +.++.+-...+.|..++..+++....+
T Consensus       201 ~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          201 QAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence            111122233455666643 344555445678888887777655444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.73  E-value=0.0051  Score=54.35  Aligned_cols=157  Identities=8%  Similarity=0.179  Sum_probs=102.2

Q ss_pred             CeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceec-ccccc--cC--CCeEEEEE---CCCCCeEEEEe---------
Q psy13076        264 FVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSE-LGNPA--HK--GGVYAVAW---KPDGTQLLTAS---------  325 (423)
Q Consensus       264 ~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~-~~~~~--~~--~~i~~l~~---~~~~~~l~s~s---------  325 (423)
                      +.-+++|++....|..++ ..+.|..|+...+..... +....  ..  ..+.+|.|   .|+++++++.-         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            345688988666665555 799999999875543222 21111  11  13579999   68888877533         


Q ss_pred             ----CCCcEEEEecC---CcceeeeeeeC------------ceeEeeEEEEEecCcEEEEEeCC-CcEEEEecCCCCCce
Q psy13076        326 ----GDKTCKLWDIE---TKSAVSEFLMG------------NQVEDQQVSCLWQGDYLLTVSLS-GFISYLDVNNPSTPI  385 (423)
Q Consensus       326 ----~d~~i~iwd~~---~~~~i~~~~~~------------~~~~~~~~~~~~~g~~l~~~~~~-~~i~~~~~~~~~~~~  385 (423)
                          .+..|..+|+.   +++.+......            .......+...++|...++++.. +.|..++....  .+
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~--~~  171 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK--TV  171 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC--CE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC--EE
Confidence                26779999999   77665444322            11235566677789988888888 88777765432  22


Q ss_pred             EEec------cCCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        386 RVIK------GHNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       386 ~~~~------~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      ..+.      ......+.|+++|+++.|+....++.+..+|+.
T Consensus       172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            2211      112237799999999988777669999888864

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.72  E-value=0.022  Score=50.62  Aligned_cols=235  Identities=10%  Similarity=-0.054  Sum_probs=130.1

Q ss_pred             EEEecCCeEEEEecCCCccc-ccccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEE
Q psy13076        105 FLYTNGNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA  182 (423)
Q Consensus       105 ~~~~~~~~~~i~~~~~~~~~-~~~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~  182 (423)
                      ++++.+..+...+++..... ............+.|++.+..| .+-...+.|..++.............. -.....++
T Consensus         7 ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-l~~p~gla   85 (318)
T 3sov_A            7 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LLSPDGLA   85 (318)
T ss_dssp             EEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-CSCCCEEE
T ss_pred             EEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-CCCccEEE
Confidence            45566667777777655311 1111122356688999854444 444456789889876542110011111 12356788


Q ss_pred             ECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe-CCCeEEEEcCCCceeeeecccc
Q psy13076        183 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS-EDNTIAVFEGPPFKFKMTKQEH  261 (423)
Q Consensus       183 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s-~d~~i~~~~~~~~~~~~~~~~~  261 (423)
                      +.+.+..+..+...... ..+...+.......+.........+++.|.+..+..+-. ..+.|..++.............
T Consensus        86 vd~~~g~ly~~d~~~~~-I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~  164 (318)
T 3sov_A           86 CDWLGEKLYWTDSETNR-IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE  164 (318)
T ss_dssp             EETTTTEEEEEETTTTE-EEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             EEcCCCeEEEEECCCCE-EEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence            88876666665444332 223333322221122234456788999987666455442 3567777764432211111222


Q ss_pred             ccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce
Q psy13076        262 SRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA  340 (423)
Q Consensus       262 ~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~  340 (423)
                      -.....++++|++..|..+. ..+.|..+|..... ...+.. .......++++.. +..+.+-...+.|..+|..+++.
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence            34568899999777665554 46789999875322 222221 1234567888753 45556666678899999877765


Q ss_pred             eeee
Q psy13076        341 VSEF  344 (423)
Q Consensus       341 i~~~  344 (423)
                      +..+
T Consensus       242 ~~~i  245 (318)
T 3sov_A          242 LREI  245 (318)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            4443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.67  E-value=0.028  Score=50.23  Aligned_cols=273  Identities=9%  Similarity=0.080  Sum_probs=132.1

Q ss_pred             cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec--ccCCC-CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc
Q psy13076         47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT--LPRTQ-RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI  123 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  123 (423)
                      ...+.+|.|.+++..++. +.++.|.. ..+.++--..  ..... ......+.+++ +..++......+ +...+.++-
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i-~~S~DgG~t  110 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIM-LHTTDGGQS  110 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEE-EEESSTTSS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeE-EEECCCCCC
Confidence            357889999877777775 45676533 3332321111  10001 11122334444 444444333322 223332221


Q ss_pred             -cccc--cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        124 -SDIY--TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       124 -~~~~--~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                       ....  ..+...+..+.+.+++..++.+. ++.|  |...+.-..+..........+..+++.|++..+++. .... .
T Consensus       111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~-~  185 (327)
T 2xbg_A          111 WSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAI--YRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGS-F  185 (327)
T ss_dssp             CEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCE--EEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSS-E
T ss_pred             ceECccccCCCCCeEEEEEECCCCEEEEeC-CccE--EEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCc-E
Confidence             1111  12334567777777777776664 4543  333322111222222334568889999988766543 2221 1


Q ss_pred             eEEEeecC-Ccceeccc-CCCcceeEEEEecCCCeeEEEEeCCCeEEEEc---CCCceeeeec-cccccCeEEEEECCCC
Q psy13076        201 GHVFMSET-GTSVGEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVFE---GPPFKFKMTK-QEHSRFVQAVRYSPSG  274 (423)
Q Consensus       201 ~~~~~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~---~~~~~~~~~~-~~~~~~i~~l~~s~~g  274 (423)
                        +...+. +.....+. .....+..+.+.+++.  ++..+.++.++...   ...+...... ......+..+++.|++
T Consensus       186 --~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~  261 (327)
T 2xbg_A          186 --YSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR--LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN  261 (327)
T ss_dssp             --EEEECTTCSSCEEEECCSSSCEEEEEECTTSC--EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred             --EEEeCCCCCceeECCCCCCCccceeEECCCCC--EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC
Confidence              111222 33322221 2334567777877765  44555677777662   1111111100 0112347888999888


Q ss_pred             CEEEEEEecCeEEEEECCCccceeccccc-ccCCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076        275 SHFASAGFDGKVFLYDGASADLVSELGNP-AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       275 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~  335 (423)
                      ..++++. +|.+. +....++....+... .....+.++.|.++++ ++.++.+|+|.-++-
T Consensus       262 ~~~~~g~-~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          262 EVWLAGG-AGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             CEEEEES-TTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             EEEEEeC-CCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            7776654 66663 333334333322211 1234567888876554 556678898776653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.67  E-value=0.028  Score=50.11  Aligned_cols=198  Identities=8%  Similarity=0.189  Sum_probs=118.7

Q ss_pred             CCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCC----CCe--EEEEEcCC--ceeeEEEeec--CCc
Q psy13076        141 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD----NQR--MVVVGEGR--ERFGHVFMSE--TGT  210 (423)
Q Consensus       141 p~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~----~~~--~~~~~~~~--~~~~~~~~~~--~~~  210 (423)
                      |....++.....+.+.+||+ +++.+...  .  .+.++.+...|+    |+.  +++++...  .....++..+  ++ 
T Consensus        38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~--~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-  111 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSL-DGKMLHSY--N--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-  111 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEET-TSCEEEEE--C--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-
T ss_pred             CCccEEEEEcCCCCEEEEcC-CCcEEEEc--c--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-
Confidence            34456666677789999999 55544332  1  256677776663    332  44555444  4445566443  33 


Q ss_pred             ceeccc-------CCCcceeEEEE--ecC-CCeeEEEEeCCCeEEEEcCC-------CceeeeeccccccCeEEEEECCC
Q psy13076        211 SVGEIS-------GQSKPINSCDF--KPS-RPFRIITGSEDNTIAVFEGP-------PFKFKMTKQEHSRFVQAVRYSPS  273 (423)
Q Consensus       211 ~~~~~~-------~~~~~i~~~~~--~~~-~~~~~~s~s~d~~i~~~~~~-------~~~~~~~~~~~~~~i~~l~~s~~  273 (423)
                      .+..+.       .....+..+++  +|. +.+.++....++.+..|+..       ..+...++.. ...+-.+.+.+.
T Consensus       112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~  190 (355)
T 3amr_A          112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE  190 (355)
T ss_dssp             CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred             ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence            243331       11145555666  564 44456777788999888752       1222233322 235667888888


Q ss_pred             CCEEEEEEecCeEEEEECC-----CccceecccccccCCCeEEEEE--CCCCC-eEEEEe-CCCcEEEEecC-Ccceeee
Q psy13076        274 GSHFASAGFDGKVFLYDGA-----SADLVSELGNPAHKGGVYAVAW--KPDGT-QLLTAS-GDKTCKLWDIE-TKSAVSE  343 (423)
Q Consensus       274 g~~l~s~s~dg~i~vwd~~-----~~~~~~~~~~~~~~~~i~~l~~--~~~~~-~l~s~s-~d~~i~iwd~~-~~~~i~~  343 (423)
                      ...|..+-++.-|..++..     +++.+...........+..|++  .++++ +|++++ .+.+..+||.+ +.+.+..
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            8899999998777777754     2334433322222346888888  56666 666666 57799999996 6666666


Q ss_pred             ee
Q psy13076        344 FL  345 (423)
Q Consensus       344 ~~  345 (423)
                      |.
T Consensus       271 f~  272 (355)
T 3amr_A          271 FR  272 (355)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.65  E-value=0.022  Score=48.60  Aligned_cols=206  Identities=12%  Similarity=0.144  Sum_probs=121.5

Q ss_pred             cccccCceeEEEEeCCCCeEE-EecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCC
Q psy13076         43 IKGHNKPITALALSPDRGTVF-TGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP  121 (423)
Q Consensus        43 ~~gh~~~V~~l~~~~~~~~l~-sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (423)
                      +.|=.+.+..++++|++..|+ ....++.|..-|.+ +++...++..                                 
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---------------------------------   67 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---------------------------------   67 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------------------------------
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------------------------------
Confidence            345456799999999876555 46678888888876 5555443210                                 


Q ss_pred             cccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee---EEeee----cCCCCCeeEEEECCCCCeEEEEE
Q psy13076        122 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI---LKNEF----HPIGGPIKDIAWSPDNQRMVVVG  194 (423)
Q Consensus       122 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~---~~~~~----~~~~~~v~~v~~s~~~~~~~~~~  194 (423)
                             +. ...-.+++.+++.++++.-.++.+.++++.....+   ....+    ...+.....++|+|+++.+.++.
T Consensus        68 -------g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~  139 (255)
T 3qqz_A           68 -------FV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK  139 (255)
T ss_dssp             -------SC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE
T ss_pred             -------CC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE
Confidence                   00 12345667777777666556677777776543321   11111    11233468999999998888876


Q ss_pred             cCCceeeEEEeec-CCcceecc-------cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee-eeeccc-----
Q psy13076        195 EGRERFGHVFMSE-TGTSVGEI-------SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-KMTKQE-----  260 (423)
Q Consensus       195 ~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~-~~~~~~-----  260 (423)
                      .........+... ....+..+       ......+..++++|.....++.+...+.+..+|...... .+.+..     
T Consensus       140 E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l  219 (255)
T 3qqz_A          140 EKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGL  219 (255)
T ss_dssp             ESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGC
T ss_pred             CcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCc
Confidence            5544322222210 11111111       112345678999998877777778888999998654321 122221     


Q ss_pred             --cccCeEEEEECCCCCEEEEEEecCeEEEEEC
Q psy13076        261 --HSRFVQAVRYSPSGSHFASAGFDGKVFLYDG  291 (423)
Q Consensus       261 --~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~  291 (423)
                        .....-.++|.|+|.++++ +..+.++.|..
T Consensus       220 ~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          220 SHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             SSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             ccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence              1124568999999985555 66666767653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.58  E-value=0.036  Score=49.19  Aligned_cols=226  Identities=10%  Similarity=0.033  Sum_probs=123.8

Q ss_pred             CceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCC----CcccccccCCcceEEEEEECCC
Q psy13076         69 GFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIEN----PAISDIYTEHSCAVNVAKYSPS  142 (423)
Q Consensus        69 ~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~----~~~~~~~~~h~~~i~~~~~sp~  142 (423)
                      ..|+..|+++......+.  ....+..+.+++.++.+.++.  ...+...++++    ......+.........+++.+.
T Consensus        10 ~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            457888887754433322  223455677777655554443  45777777665    2222222222234567888875


Q ss_pred             CCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecc-cCCCc
Q psy13076        143 GFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI-SGQSK  220 (423)
Q Consensus       143 ~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  220 (423)
                      +..| ++-...+.|.+.+.........  ..........+++.|.+..++.+..+.......... .+.....+ .....
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~-dG~~~~~~~~~~~~  164 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL-NGVDIYSLVTENIQ  164 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEE--EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET-TSCCEEEEECSSCS
T ss_pred             CCeEEEEECCCCEEEEEeCCCCceEEE--EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC-CCCCeEEEEECCCC
Confidence            5544 4445678899999765432211  111124568999999877777665432111222222 23322222 23345


Q ss_pred             ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee--eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcccee
Q psy13076        221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK--MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVS  298 (423)
Q Consensus       221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~--~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~  298 (423)
                      ..+.++++|.+..+.++-+..+.|..++.......  ............+++. .+.++++-...+.|..++..+++...
T Consensus       165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN  243 (316)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             CceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceE
Confidence            67889999887766666667788998886432211  1111122335567774 34455555556788888876666544


Q ss_pred             cc
Q psy13076        299 EL  300 (423)
Q Consensus       299 ~~  300 (423)
                      .+
T Consensus       244 ~i  245 (316)
T 1ijq_A          244 LL  245 (316)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.58  E-value=0.053  Score=51.05  Aligned_cols=209  Identities=11%  Similarity=0.016  Sum_probs=115.7

Q ss_pred             eEEEEEECC-CCCEEEEEcc-CCcEEEEEcCCCceeEEeeecC-CCCCeeEEEE-------CCCCCeEEEEEcCCc----
Q psy13076        133 AVNVAKYSP-SGFYIASGDI-SGKVRIWDTVNKEHILKNEFHP-IGGPIKDIAW-------SPDNQRMVVVGEGRE----  198 (423)
Q Consensus       133 ~i~~~~~sp-~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~-~~~~v~~v~~-------s~~~~~~~~~~~~~~----  198 (423)
                      ....++|+| ++..|..+.. .+.|++.|.+++.......... .......++|       ++++..|+++.....    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467889999 3444544443 4678888887655432211111 1234788999       999997777765541    


Q ss_pred             e-eeEEEeecC-Ccce-----ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC-------Ccee----------
Q psy13076        199 R-FGHVFMSET-GTSV-----GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP-------PFKF----------  254 (423)
Q Consensus       199 ~-~~~~~~~~~-~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~-------~~~~----------  254 (423)
                      . ...++.... +.-.     ..+. .......++++|.+..+.++-..++.|..++..       ....          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence            1 122222222 1110     1111 122345778888777767777788889999864       2211          


Q ss_pred             ---eeeccccccCeEEEEECCCCCEEEEE-EecCeEEEEEC--CCccce--eccc----ccc---------cCCCeE-EE
Q psy13076        255 ---KMTKQEHSRFVQAVRYSPSGSHFASA-GFDGKVFLYDG--ASADLV--SELG----NPA---------HKGGVY-AV  312 (423)
Q Consensus       255 ---~~~~~~~~~~i~~l~~s~~g~~l~s~-s~dg~i~vwd~--~~~~~~--~~~~----~~~---------~~~~i~-~l  312 (423)
                         .............++|+|+|++|..+ +..+.|+.++.  ..+...  ..+.    ..+         .-.... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence               01111122345789999999954444 45678888553  332210  1110    001         112244 45


Q ss_pred             EEC-------CCCCeEEEEeCCCcEEEEecCCcceeeee
Q psy13076        313 AWK-------PDGTQLLTASGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       313 ~~~-------~~~~~l~s~s~d~~i~iwd~~~~~~i~~~  344 (423)
                      +..       ++|.+.++=.....||.++ .++ .+.++
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~Ti  415 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTY  415 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEE
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEE
Confidence            554       5677777777788999998 444 34444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.54  E-value=0.00097  Score=66.43  Aligned_cols=234  Identities=9%  Similarity=-0.077  Sum_probs=121.3

Q ss_pred             EEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEEEcCC----CceeEEeeecCCCCCeeE
Q psy13076        106 LYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVN----KEHILKNEFHPIGGPIKD  180 (423)
Q Consensus       106 ~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vwd~~~----~~~~~~~~~~~~~~~v~~  180 (423)
                      ++.....++..+++......+.... ..+..++|++.+..|+..+ ..+.|+.+++..    .....  ...........
T Consensus       381 l~~~~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~g  457 (699)
T 1n7d_A          381 FFTNRHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDG  457 (699)
T ss_dssp             CCCCTTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCC
T ss_pred             EecCccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcce
Confidence            3444556666666655544433322 3456788998766666554 457898888764    11110  01000122456


Q ss_pred             EEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCC-CeEEEEcCCCceeeeecc
Q psy13076        181 IAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED-NTIAVFEGPPFKFKMTKQ  259 (423)
Q Consensus       181 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d-~~i~~~~~~~~~~~~~~~  259 (423)
                      |++.+.+..|+++...... ..++..+.......+.........+++.|.+.++.++-... +.|..++...........
T Consensus       458 lavD~~~g~LY~tD~~~~~-I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~  536 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGT-VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  536 (699)
T ss_dssp             EECCCSSSBCEECCTTTSC-EEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred             EEEEeeCCcEEEEeccCCe-EEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence            7887665555544322222 23333332222222222234567788888766545444332 567776543222111111


Q ss_pred             ccccCeEEEEECCCCCEE-EEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        260 EHSRFVQAVRYSPSGSHF-ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       260 ~~~~~i~~l~~s~~g~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      ........|+++|++..| ++-+..+.|..+++........+..........+|++..+ .++++....+.|..+|..++
T Consensus       537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred             CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence            223345679999986654 4444567899999754322211111111223446666554 56666667788999998777


Q ss_pred             ceeeee
Q psy13076        339 SAVSEF  344 (423)
Q Consensus       339 ~~i~~~  344 (423)
                      +.+..+
T Consensus       616 ~~~~~i  621 (699)
T 1n7d_A          616 SDVNLL  621 (699)
T ss_dssp             EEEECC
T ss_pred             CceEEe
Confidence            665544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.54  E-value=0.025  Score=49.91  Aligned_cols=197  Identities=12%  Similarity=0.079  Sum_probs=117.3

Q ss_pred             ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee-eeeccc----c--ccCeEEEEE---CCCCCEEEEEEe--------
Q psy13076        221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-KMTKQE----H--SRFVQAVRY---SPSGSHFASAGF--------  282 (423)
Q Consensus       221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~-~~~~~~----~--~~~i~~l~~---s~~g~~l~s~s~--------  282 (423)
                      ...+++|++.+....++.-..++|..|+...... ......    .  ...+..+.+   .|+|+++++...        
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            4557788876655344444789999998653322 112221    1  123578999   688888776442        


Q ss_pred             -----cCeEEEEECC---Cccceecccccc-----------cCCCeEEEEECCCCCeEEEEeCC-CcEEEEecCCcceee
Q psy13076        283 -----DGKVFLYDGA---SADLVSELGNPA-----------HKGGVYAVAWKPDGTQLLTASGD-KTCKLWDIETKSAVS  342 (423)
Q Consensus       283 -----dg~i~vwd~~---~~~~~~~~~~~~-----------~~~~i~~l~~~~~~~~l~s~s~d-~~i~iwd~~~~~~i~  342 (423)
                           +..+..+|+.   +++.+.......           -.....+++..++|+.-++++.- +.|...+.... .+.
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~  172 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS  172 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence                 6789999998   776654332111           11247899999999999988887 77777766544 233


Q ss_pred             eeeeCce-----eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCC-ceEEec-cCC---CceeEE-EecCCCCe-EEEe
Q psy13076        343 EFLMGNQ-----VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPST-PIRVIK-GHN---KPITAL-ALSPDRGT-VFTG  410 (423)
Q Consensus       343 ~~~~~~~-----~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~~-~h~---~~v~~i-~~sp~~~~-l~s~  410 (423)
                      .+....+     ....-+...++|..|++....+.+..+|+..+.. ++..-+ |..   .....+ .--.+++. |++.
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~  252 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGA  252 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEc
Confidence            3322221     1122456677899998887799999999885433 122110 321   123333 33346666 5555


Q ss_pred             cCCCcEEE
Q psy13076        411 SHDGFITR  418 (423)
Q Consensus       411 s~D~~i~~  418 (423)
                      +..+.+.+
T Consensus       253 ~~~~~~~l  260 (334)
T 2p9w_A          253 RAPYAISF  260 (334)
T ss_dssp             ETTEEEEE
T ss_pred             CCCCEEEE
Confidence            55554444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.48  E-value=0.072  Score=50.16  Aligned_cols=239  Identities=12%  Similarity=0.137  Sum_probs=127.1

Q ss_pred             eeEEEECC-CCCeEEEEEcCCceeeEEEeecCCcceecccC----CCcceeEEEE-------ecCCCeeEEEEeCCC---
Q psy13076        178 IKDIAWSP-DNQRMVVVGEGRERFGHVFMSETGTSVGEISG----QSKPINSCDF-------KPSRPFRIITGSEDN---  242 (423)
Q Consensus       178 v~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~-------~~~~~~~~~s~s~d~---  242 (423)
                      ...|+|+| +...|+++.... ....+.+...+ .+..+..    .......++|       ++++..++++...++   
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~-~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGH-KAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETE-EEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCC-CeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            46789999 466666655432 22222333332 2222221    2235788999       999886555544431   


Q ss_pred             ---eEEEEcCCC-ceee-----eeccccccCeEEEEECCCCC-EEEEEEecCeEEEEECC-------Cccc---------
Q psy13076        243 ---TIAVFEGPP-FKFK-----MTKQEHSRFVQAVRYSPSGS-HFASAGFDGKVFLYDGA-------SADL---------  296 (423)
Q Consensus       243 ---~i~~~~~~~-~~~~-----~~~~~~~~~i~~l~~s~~g~-~l~s~s~dg~i~vwd~~-------~~~~---------  296 (423)
                         .+.+++... ..+.     ..... ......++++|++. ++++-..++.|..+|..       ++..         
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               255554221 1111     11111 12335678899655 45555577889999987       4443         


Q ss_pred             --eecccccccCCCeEEEEECCCCCe-EEEEeCCCcEEEEecC--Cccee--eeeeeC--c-----------ee-Eee-E
Q psy13076        297 --VSELGNPAHKGGVYAVAWKPDGTQ-LLTASGDKTCKLWDIE--TKSAV--SEFLMG--N-----------QV-EDQ-Q  354 (423)
Q Consensus       297 --~~~~~~~~~~~~i~~l~~~~~~~~-l~s~s~d~~i~iwd~~--~~~~i--~~~~~~--~-----------~~-~~~-~  354 (423)
                        ...+...........++|+|+|+. .++=+....|+.++..  .+...  ..+...  .           .. ... -
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence              111111122345689999999995 4554667789886653  32210  111110  0           00 011 1


Q ss_pred             EEEE-------ecCcEEEEEeCCCcEEEEecCCCCCceEEeccC--------------C----------CceeEEEecCC
Q psy13076        355 VSCL-------WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGH--------------N----------KPITALALSPD  403 (423)
Q Consensus       355 ~~~~-------~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h--------------~----------~~v~~i~~sp~  403 (423)
                      +...       .+|..+++-..+..|+.++. ++  .+..+.|.              .          ..-..|++.++
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G--~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~  454 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG--IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV  454 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC--BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred             EEEccccccccCCCeEEEEECCCCEEEEEeC-CC--CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence            1221       23444455556677888873 22  33343321              1          23678999997


Q ss_pred             -CCeEEEecCCCcEEEeeCC
Q psy13076        404 -RGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       404 -~~~l~s~s~D~~i~~W~~~  422 (423)
                       +.++++=.....||.++++
T Consensus       455 ~g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          455 KEMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             TTEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEECC
Confidence             7777777888899988764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.28  E-value=0.0045  Score=61.66  Aligned_cols=227  Identities=10%  Similarity=0.045  Sum_probs=118.7

Q ss_pred             CCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCC----CcccccccCCcceEEEEEECC
Q psy13076         68 DGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIEN----PAISDIYTEHSCAVNVAKYSP  141 (423)
Q Consensus        68 D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~----~~~~~~~~~h~~~i~~~~~sp  141 (423)
                      .+.|++.++.+......+..  ...+..+.+++.++.++++.  ...+...+++.    ......+.........+++.+
T Consensus       385 ~~~I~~id~~~~~~~~~~~~--~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC--CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred             ccceEEEeCCCCcceeeecc--CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence            35777888876554333221  22344456676665555543  45666666654    222222222222345678886


Q ss_pred             CCC-EEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec-CCcceecc-cCC
Q psy13076        142 SGF-YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE-TGTSVGEI-SGQ  218 (423)
Q Consensus       142 ~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~  218 (423)
                      .+. +.++-...+.|.+.+........  ...........+++.|.+..|+.+..+..  ..++... .+.....+ ...
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~--l~~~~~~~P~giavDp~~g~ly~td~~~~--~~I~~~~~dG~~~~~l~~~~  538 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKRKT--LFREQGSKPRAIVVDPVHGFMYWTDWGTP--AKIKKGGLNGVDIYSLVTEN  538 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCEEE--ECCCSSCCCCCEECCSSSSCCEECCCSSS--CCEEBCCSSSCCCCEESCSS
T ss_pred             eCCcEEEEeccCCeEEEEecCCCceEE--EEeCCCCCcceEEEccCCCcEEEcccCCC--CeEEEEeCCCCCeeEEEeCC
Confidence            444 44444456889999876543221  11111133577899997766655432221  1222222 12222222 223


Q ss_pred             CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecc--ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc
Q psy13076        219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ--EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL  296 (423)
Q Consensus       219 ~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~  296 (423)
                      ....+.++++|.+..+.++-+..+.|..++...........  ........+++..+ .++++....+.|..++..+++.
T Consensus       539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred             CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence            34567899998877666666777889998864322221111  11122334555443 3445555567899999878776


Q ss_pred             eeccc
Q psy13076        297 VSELG  301 (423)
Q Consensus       297 ~~~~~  301 (423)
                      +..+.
T Consensus       618 ~~~i~  622 (699)
T 1n7d_A          618 VNLLA  622 (699)
T ss_dssp             EECCC
T ss_pred             eEEee
Confidence            66654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.24  E-value=0.12  Score=47.53  Aligned_cols=223  Identities=12%  Similarity=-0.011  Sum_probs=124.3

Q ss_pred             CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC----cceecccCCCcceeEEEE
Q psy13076        152 SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG----TSVGEISGQSKPINSCDF  227 (423)
Q Consensus       152 d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~  227 (423)
                      ...|+..++........  . .....+..++|++.+..+..+......+ ..+..+..    .....+.........+++
T Consensus        91 ~~~I~~i~l~~~~~~~~--~-~~~~~~~~l~~d~~~~~lywsD~~~~~I-~~~~~~g~~~~~~~~~~~~~~~~~p~glav  166 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSL--I-PNLRNVVALDTEVASNRIYWSDLSQRMI-CSTQLDRAHGVSSYDTVISRDIQAPDGLAV  166 (400)
T ss_dssp             TTEEEEECTTSCSCEEE--E-CSCSCEEEEEEETTTTEEEEEETTTTEE-EEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred             cceeEEEccCCcceeEe--c-cccCcceEEeeeeccCceEEEecCCCeE-EEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence            36788888765543221  1 1234577899999877776665444332 22222221    111222223445678888


Q ss_pred             ecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe--cCeEEEEECCCccceeccccccc
Q psy13076        228 KPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF--DGKVFLYDGASADLVSELGNPAH  305 (423)
Q Consensus       228 ~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~  305 (423)
                      .+.+..+.++-...+.|.+.+...................++++|.+.+|..+..  .+.|...++.... ...+.. ..
T Consensus       167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~~-~~  244 (400)
T 3p5b_L          167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT-EN  244 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEEC-SS
T ss_pred             EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEEE-CC
Confidence            8755555566667788888886543332222233345788999997666655543  3678888865332 222211 12


Q ss_pred             CCCeEEEEECCCCCeEEEE-eCCCcEEEEecCCcceeeeeeeCce--eEeeEEEEEecCcEEEEEeCCCcEEEEecCCCC
Q psy13076        306 KGGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAVSEFLMGNQ--VEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS  382 (423)
Q Consensus       306 ~~~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~  382 (423)
                      -.....|+++|++..|..+ ...+.|..+|+.... ...+.....  .....+++ ..+..+.+-...+.|..+|..++.
T Consensus       245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCC
Confidence            3457899999877666554 556789999986543 233322110  11112333 234444455566788888865543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.13  E-value=0.27  Score=49.46  Aligned_cols=222  Identities=12%  Similarity=-0.037  Sum_probs=120.8

Q ss_pred             CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCC----cceecccCCCcceeEEEEe
Q psy13076        153 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG----TSVGEISGQSKPINSCDFK  228 (423)
Q Consensus       153 ~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~  228 (423)
                      ..|+..++...+....   ......+..++|.+....++.+......+. .+..+..    .....+......+..+++.
T Consensus       404 ~~Ir~i~l~~~~~~~l---~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~-~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMIC-STQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             SSEEEECTTSCCCEEE---ECSCSSEEEEEEETTTTEEEEEETTTTEEE-EEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             cceeEeeccCCcceee---ecCCCceEEEeecccCCeeEEeeccceeEE-EEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            4577777654433211   112245678999987776666554443322 2222211    1122222244556788888


Q ss_pred             cCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe-c-CeEEEEECCCccceecccccccC
Q psy13076        229 PSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF-D-GKVFLYDGASADLVSELGNPAHK  306 (423)
Q Consensus       229 ~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~-d-g~i~vwd~~~~~~~~~~~~~~~~  306 (423)
                      +.+..+.++-...+.|.+.+...................|+++|.+.+|..+.. . +.|...++.... ...+.. ...
T Consensus       480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~-~~l  557 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT-ENI  557 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC-SSC
T ss_pred             ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEe-CCC
Confidence            877666667777888998886543332222233345789999998666655543 2 678888875433 333321 223


Q ss_pred             CCeEEEEECCCCCeEEEE-eCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEE-eCCCcEEEEecCCC
Q psy13076        307 GGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTV-SLSGFISYLDVNNP  381 (423)
Q Consensus       307 ~~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~i~~~~~~~~  381 (423)
                      ....+|++++.+..|..+ .....|...++..... ..+..........+.+...+++|... ...+.|...|..++
T Consensus       558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence            467899999766655554 4566899999865432 22221110001112222234454433 45567777776554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.08  E-value=0.16  Score=45.81  Aligned_cols=226  Identities=13%  Similarity=0.101  Sum_probs=109.0

Q ss_pred             ceEEeeCCCCCeEEEecCCeEEEEecCCCcccc-----cccCCcceEEEEEECCC---CCEEEEEcc-C-----CcEEEE
Q psy13076         93 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD-----IYTEHSCAVNVAKYSPS---GFYIASGDI-S-----GKVRIW  158 (423)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~h~~~i~~~~~sp~---~~~l~s~~~-d-----~~i~vw  158 (423)
                      +..+.++|+|..++......+.+.+  ++....     ++..-......++|+|+   +..|..+.. .     ..|..+
T Consensus        33 P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~  110 (352)
T 2ism_A           33 PWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL  110 (352)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred             ceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence            4456777888876666556666665  232111     12222356789999998   555544433 2     567777


Q ss_pred             EcCCCce----eEEeeec---CCCCCeeEEEECCCCCeEEEEEcCCc---------eeeEEEeecC-Cc-----------
Q psy13076        159 DTVNKEH----ILKNEFH---PIGGPIKDIAWSPDNQRMVVVGEGRE---------RFGHVFMSET-GT-----------  210 (423)
Q Consensus       159 d~~~~~~----~~~~~~~---~~~~~v~~v~~s~~~~~~~~~~~~~~---------~~~~~~~~~~-~~-----------  210 (423)
                      +......    .....+.   ........++|.|||...++.++...         ..+.++..+. +.           
T Consensus       111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~  190 (352)
T 2ism_A          111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRR  190 (352)
T ss_dssp             EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCT
T ss_pred             EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCC
Confidence            7653211    1111121   11112368999999975555443211         1123333221 10           


Q ss_pred             --ceecccCCCcceeEEEEec-CCCeeEEEEe-CCC-------eEEEEcCCC-c---------------eeeeecccccc
Q psy13076        211 --SVGEISGQSKPINSCDFKP-SRPFRIITGS-EDN-------TIAVFEGPP-F---------------KFKMTKQEHSR  263 (423)
Q Consensus       211 --~~~~~~~~~~~i~~~~~~~-~~~~~~~s~s-~d~-------~i~~~~~~~-~---------------~~~~~~~~~~~  263 (423)
                        ....+..-......++|+| .+.. .++-. .+.       .|....... +               .....+ .+..
T Consensus       191 ~~~~~i~a~G~rnp~g~a~d~~~g~l-~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~  268 (352)
T 2ism_A          191 GARPEVYSLGHRNPQGLAWHPKTGEL-FSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQGF  268 (352)
T ss_dssp             TSCTTEEEECCSEECCCEECTTTCCE-EEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTCC
T ss_pred             CCCccEEEEcCCCcccEEEECCCCCE-EEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCCC
Confidence              0011111123466788888 4443 33322 222       244332110 0               000011 1112


Q ss_pred             CeEEEEECCCCCEEEEEEecCeEEEEECCCccc------eecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076        264 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADL------VSELGNPAHKGGVYAVAWKPDGTQLLTAS  325 (423)
Q Consensus       264 ~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~------~~~~~~~~~~~~i~~l~~~~~~~~l~s~s  325 (423)
                      ....++| .+|.++++.-..+.|...+......      ...+.  .-...+.++++.|||.+.++..
T Consensus       269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence            3456666 4666665555566777766543321      11121  1135688999999998777653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.04  E-value=0.28  Score=48.03  Aligned_cols=403  Identities=10%  Similarity=0.032  Sum_probs=198.2

Q ss_pred             eeeEEEEeCCEE-EEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeE-EEe-cCCCceEEeecCCcceeec
Q psy13076          8 QQVSCLWQGDYL-LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV-FTG-SHDGFITRWNAKTEYIFAT   84 (423)
Q Consensus         8 ~~~~~~~~~~~~-~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l-~sg-~~D~~i~vW~~~~~~~~~~   84 (423)
                      .-+|++|.++.| .+-...+.|.+.+++. ......+...-..-..|++.|....| +|- +..+.|...+++.......
T Consensus        83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l  161 (628)
T 4a0p_A           83 EGMAVDWLGKNLYWADTGTNRIEVSKLDG-QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL  161 (628)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTS-TTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             ceEEEEeCCCEEEEEECCCCEEEEEecCC-CcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence            468999965555 4445568899999864 22222333334456799999855444 443 2356777777664432211


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEec--CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~  162 (423)
                      ..  .-..+..+..+++++.+.+..  .+.+...+++.... .++.........+++.. +....+-...+.|...|..+
T Consensus       162 ~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~t  237 (628)
T 4a0p_A          162 VP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTS  237 (628)
T ss_dssp             EC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred             EC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCC
Confidence            11  223455677787666555543  45677777765433 33333333344666654 33334444467787777544


Q ss_pred             Ccee--EEe---------eecCC-----------CCCeeEEEEC-CCCCeEEEEEcCC------------ceee------
Q psy13076        163 KEHI--LKN---------EFHPI-----------GGPIKDIAWS-PDNQRMVVVGEGR------------ERFG------  201 (423)
Q Consensus       163 ~~~~--~~~---------~~~~~-----------~~~v~~v~~s-~~~~~~~~~~~~~------------~~~~------  201 (423)
                      ++..  ...         .++..           .+.+..++.. |.+.+-..+..+.            ..+.      
T Consensus       238 g~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~  317 (628)
T 4a0p_A          238 GQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKS  317 (628)
T ss_dssp             CCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETT
T ss_pred             CCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccc
Confidence            3211  100         01100           0011112211 1121111111000            0000      


Q ss_pred             --EEEeecCCcc-eeccc-CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc------cccCeEEEEEC
Q psy13076        202 --HVFMSETGTS-VGEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE------HSRFVQAVRYS  271 (423)
Q Consensus       202 --~~~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~------~~~~i~~l~~s  271 (423)
                        +....+.... ...+. .....+..++|.+....+..+-...+.|+.++............      ....+..+++.
T Consensus       318 ~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD  397 (628)
T 4a0p_A          318 AINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID  397 (628)
T ss_dssp             EEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEE
T ss_pred             eEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEee
Confidence              0000011000 00111 12234667888887666556555667777776432211111111      23356789999


Q ss_pred             CCCCEE-EEEEecCeEEEEECCCccceecccccccCCCeEEEEECC-CCCeEEEEeCCC--cEEEEecCCcceeeeeeeC
Q psy13076        272 PSGSHF-ASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP-DGTQLLTASGDK--TCKLWDIETKSAVSEFLMG  347 (423)
Q Consensus       272 ~~g~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~s~s~d~--~i~iwd~~~~~~i~~~~~~  347 (423)
                      +.++.| .+-+..+.|.+.++. ++....+.. .......+++++| +|..+.+-....  .|...+.... ....+...
T Consensus       398 ~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~-~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~-~~~~l~~~  474 (628)
T 4a0p_A          398 IYSRYIYWTCEATNVINVTRLD-GRSVGVVLK-GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT-EREVLFFS  474 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETT-SCEEEEEEE-CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC-SCEEEECS
T ss_pred             ccCCeEEEEcCCCCEEEEEECC-CCeEEEEEe-CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC-CcEEEEec
Confidence            987755 455567788888874 443333321 1234578999999 565555543333  4555555432 22222211


Q ss_pred             ceeEeeEEEEEecCcEEEEEe-CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        348 NQVEDQQVSCLWQGDYLLTVS-LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       348 ~~~~~~~~~~~~~g~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                      .-.....+++.+.++.|..+. ..+.|...++...... ....+.......++... +.++.+-.....|..-|
T Consensus       475 ~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~-~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~  546 (628)
T 4a0p_A          475 GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI-VLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKID  546 (628)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE-EEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEE
Confidence            111234456666666766554 4567888887543322 12223334456777765 45555555555555444

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.92  E-value=0.24  Score=45.35  Aligned_cols=274  Identities=12%  Similarity=0.146  Sum_probs=148.1

Q ss_pred             cceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCe
Q psy13076         25 SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKN  104 (423)
Q Consensus        25 dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (423)
                      +..+-+.|+.++..+.+.-..    --+.-.+|..+.+|--+ ..++.++|++++..++...-..  ..+.+.|-.+ ..
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e--~VvfWkWis~-~~  118 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISL-NT  118 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS--CCCEEEEEET-TE
T ss_pred             CCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC--CceEEEecCC-Ce
Confidence            348889999987776542222    22566788888776654 5899999999987666553222  2333333322 34


Q ss_pred             EEEecCCeEEEEecCC-CcccccccCCc----ceEEEEEECCCCCEEEEEc-------cCCcEEEEEcCCCceeEEeeec
Q psy13076        105 FLYTNGNSVIIRNIEN-PAISDIYTEHS----CAVNVAKYSPSGFYIASGD-------ISGKVRIWDTVNKEHILKNEFH  172 (423)
Q Consensus       105 ~~~~~~~~~~i~~~~~-~~~~~~~~~h~----~~i~~~~~sp~~~~l~s~~-------~d~~i~vwd~~~~~~~~~~~~~  172 (423)
                      +..-.+..+..|++++ ....++|..|.    ..|..-+.+++.+.++-.+       ..|.+.+|..+.+....   ..
T Consensus       119 l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~---ie  195 (494)
T 1bpo_A          119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---IE  195 (494)
T ss_dssp             EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE---EC
T ss_pred             EEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch---he
Confidence            4455678899999974 45566676664    5777788899999887543       24778899987654221   11


Q ss_pred             CCCCCeeEEEECC--CCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076        173 PIGGPIKDIAWSP--DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP  250 (423)
Q Consensus       173 ~~~~~v~~v~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~  250 (423)
                      ++.+....+....  ....+++.+.....-+.+...+.+..                 |.+.-    .-.-+.+-+    
T Consensus       196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~-----------------~~~~~----~f~kk~vdv----  250 (494)
T 1bpo_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP-----------------PTGNQ----PFPKKAVDV----  250 (494)
T ss_dssp             CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCC-----------------CTTCC----CCCCEEEEC----
T ss_pred             eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC-----------------ccCCC----Cccceeeee----
Confidence            2111111111111  11112221111000001111110000                 00000    000000111    


Q ss_pred             CceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076        251 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTC  330 (423)
Q Consensus       251 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i  330 (423)
                          ....+...++..++..++.-..+..-+.-|.|.++|+.++..+..-..  ....|..-+-+....=++.....|.|
T Consensus       251 ----~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI--s~~~iF~t~~~~~~~Gi~~Vnr~GqV  324 (494)
T 1bpo_A          251 ----FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQV  324 (494)
T ss_dssp             ----CCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred             ----eCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc--cCCceEEecccCCCCcEEEEccCceE
Confidence                112234456677899999988898999999999999999988755432  23445444444443444444566666


Q ss_pred             EEEecCCcce
Q psy13076        331 KLWDIETKSA  340 (423)
Q Consensus       331 ~iwd~~~~~~  340 (423)
                      .--.+.....
T Consensus       325 l~v~v~e~~i  334 (494)
T 1bpo_A          325 LSVCVEEENI  334 (494)
T ss_dssp             EEEEECTTTH
T ss_pred             EEEEEccccc
Confidence            5555544433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.80  E-value=0.26  Score=43.92  Aligned_cols=181  Identities=15%  Similarity=0.143  Sum_probs=100.7

Q ss_pred             EEEeecCCcceecccCCCcceeEEEEecCCC-------eeEEEEeC--CCeEEEEcCC--Cceeeeecc------ccccC
Q psy13076        202 HVFMSETGTSVGEISGQSKPINSCDFKPSRP-------FRIITGSE--DNTIAVFEGP--PFKFKMTKQ------EHSRF  264 (423)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~s~s~--d~~i~~~~~~--~~~~~~~~~------~~~~~  264 (423)
                      .+++. .++.+..+..  ..++.++..|.-.       ..+++...  ++++.+|+..  ..++.....      .....
T Consensus        53 ~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~  129 (355)
T 3amr_A           53 VVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINE  129 (355)
T ss_dssp             EEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSS
T ss_pred             EEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCC
Confidence            34444 6666666643  3456666655311       22344444  5889999652  222221100      11134


Q ss_pred             eEEEEE--CCC-CC-EEEEEEecCeEEEEECC-------CccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEE
Q psy13076        265 VQAVRY--SPS-GS-HFASAGFDGKVFLYDGA-------SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW  333 (423)
Q Consensus       265 i~~l~~--s~~-g~-~l~s~s~dg~i~vwd~~-------~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iw  333 (423)
                      +..+++  +|. ++ |++....+|.+..|++.       +.+.+.++..   .+.+..++.++....|..+-.+.-|-.+
T Consensus       130 pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~~g~Lyv~eEd~GIw~~  206 (355)
T 3amr_A          130 VYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDEYGRLYIAEEDEAIWKF  206 (355)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred             eeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCCCCeEEEecccceEEEE
Confidence            555666  775 54 67778889999998873       2344555542   3568899999988899999888666555


Q ss_pred             ecC-----CcceeeeeeeC---ceeEeeEEEEEecCc-EEEEEe-CCCcEEEEecCCCCCceEEe
Q psy13076        334 DIE-----TKSAVSEFLMG---NQVEDQQVSCLWQGD-YLLTVS-LSGFISYLDVNNPSTPIRVI  388 (423)
Q Consensus       334 d~~-----~~~~i~~~~~~---~~~~~~~~~~~~~g~-~l~~~~-~~~~i~~~~~~~~~~~~~~~  388 (423)
                      +..     +.+.+......   ...+...+-...+|+ +|++.+ .+....+|+.+.....+..+
T Consensus       207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            644     23344333222   122222222223455 666666 46688999986433333333

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.76  E-value=0.094  Score=47.16  Aligned_cols=137  Identities=17%  Similarity=0.185  Sum_probs=77.9

Q ss_pred             ecCeEEEEECCCcc-ceecccccc-----cCCCeEEEEECC--CCC--eEEEEeC--CCcEEEEecCCcce----eeeee
Q psy13076        282 FDGKVFLYDGASAD-LVSELGNPA-----HKGGVYAVAWKP--DGT--QLLTASG--DKTCKLWDIETKSA----VSEFL  345 (423)
Q Consensus       282 ~dg~i~vwd~~~~~-~~~~~~~~~-----~~~~i~~l~~~~--~~~--~l~s~s~--d~~i~iwd~~~~~~----i~~~~  345 (423)
                      .+|.|.++|.++.. ...++....     .......+.+.+  ++.  ++++...  +.+|.+|++.....    +.++.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            68999999987421 122332211     233566777755  453  4444333  46788887754322    22222


Q ss_pred             eCceeEeeEEEEEecCcEEEEEe-----------------CCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEE
Q psy13076        346 MGNQVEDQQVSCLWQGDYLLTVS-----------------LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF  408 (423)
Q Consensus       346 ~~~~~~~~~~~~~~~g~~l~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~  408 (423)
                      ...-.....+.+.++|.+.++..                 ..|.++.++..   . ++.+...-..-+.++||||++.|.
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~l~~pNGia~spDg~~lY  236 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEGFDFANGINISPDGKYVY  236 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEEESSEEEEEECTTSSEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---e-EEEeecCCcccCcceECCCCCEEE
Confidence            21122345566777888877654                 12456666542   2 233333335678999999998765


Q ss_pred             -EecCCCcEEEeeCC
Q psy13076        409 -TGSHDGFITRWNAK  422 (423)
Q Consensus       409 -s~s~D~~i~~W~~~  422 (423)
                       +-+..+.|..|++.
T Consensus       237 vadt~~~~I~~~~~~  251 (355)
T 3sre_A          237 IAELLAHKIHVYEKH  251 (355)
T ss_dssp             EEEGGGTEEEEEEEC
T ss_pred             EEeCCCCeEEEEEEC
Confidence             45567888888753

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.69  E-value=0.62  Score=49.31  Aligned_cols=131  Identities=13%  Similarity=0.210  Sum_probs=85.3

Q ss_pred             cceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCe
Q psy13076         25 SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKN  104 (423)
Q Consensus        25 dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (423)
                      +..|-+.|+.+|..+.+.-..    --+.-.+|..+.+|--+ ..++.|+|++++..++...-.  ...+.+.|-... .
T Consensus        47 ~~~vvIidl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~--e~VvfWkWis~~-~  118 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISLN-T  118 (1630)
T ss_pred             CceEEEEECCCCCCccccccc----chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC--CCceEEEecCCC-e
Confidence            348889999887766432211    12455678777766654 689999999987655544321  223344444333 3


Q ss_pred             EEEecCCeEEEEecCC-CcccccccCC----cceEEEEEECCCCCEEEEEc-------cCCcEEEEEcCCC
Q psy13076        105 FLYTNGNSVIIRNIEN-PAISDIYTEH----SCAVNVAKYSPSGFYIASGD-------ISGKVRIWDTVNK  163 (423)
Q Consensus       105 ~~~~~~~~~~i~~~~~-~~~~~~~~~h----~~~i~~~~~sp~~~~l~s~~-------~d~~i~vwd~~~~  163 (423)
                      +..-++..+..|++++ ....++|..|    ...|..-+.+++.+.++-.+       ..|.+.+|..+.+
T Consensus       119 l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~  189 (1630)
T 1xi4_A          119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  189 (1630)
T ss_pred             eEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence            4445677899999973 4566777777    45677778888888877433       3578889887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.47  E-value=0.46  Score=42.70  Aligned_cols=53  Identities=13%  Similarity=0.145  Sum_probs=33.5

Q ss_pred             ecCcEEEEEeCCCcEEEEecCCCCCc-----eEEeccCCCceeEEEecCCCCeEEEec
Q psy13076        359 WQGDYLLTVSLSGFISYLDVNNPSTP-----IRVIKGHNKPITALALSPDRGTVFTGS  411 (423)
Q Consensus       359 ~~g~~l~~~~~~~~i~~~~~~~~~~~-----~~~~~~h~~~v~~i~~sp~~~~l~s~s  411 (423)
                      ++|..+++.-..+.|...+.......     ...+..-...++++++.||+.++++..
T Consensus       276 ~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          276 FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            57776666666677877776543321     122212235789999999998877653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.43  E-value=0.46  Score=43.42  Aligned_cols=138  Identities=14%  Similarity=0.210  Sum_probs=83.1

Q ss_pred             eCCCCeEEEecCCCceEEeecCCcceeecccCC---CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcc-c-------
Q psy13076         56 SPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT---QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI-S-------  124 (423)
Q Consensus        56 ~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-------  124 (423)
                      +.++..++.+ .++.||.=++..+.-++.+...   ......-+.-+|+|.+++..+...+.|-.+..+.. .       
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            3455555444 3366776666533223333222   12233346678999999988888888776652210 0       


Q ss_pred             ----cccc------CCcceEEEEEECCC---CCEEEEEccCCcEEEEEcCCCce--e-EE-----eeecCCCCCeeEEEE
Q psy13076        125 ----DIYT------EHSCAVNVAKYSPS---GFYIASGDISGKVRIWDTVNKEH--I-LK-----NEFHPIGGPIKDIAW  183 (423)
Q Consensus       125 ----~~~~------~h~~~i~~~~~sp~---~~~l~s~~~d~~i~vwd~~~~~~--~-~~-----~~~~~~~~~v~~v~~  183 (423)
                          +.+.      ....+|..+.|||-   +..|++-..|++||+||+.....  . ++     .........|.+++|
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence                0111      12467999999994   56899999999999999875221  1 11     111122257889999


Q ss_pred             CCCCCeEEEEE
Q psy13076        184 SPDNQRMVVVG  194 (423)
Q Consensus       184 s~~~~~~~~~~  194 (423)
                      .+++-.+.+..
T Consensus       188 g~~~lTLYvl~  198 (452)
T 3pbp_A          188 SKDGLTLYCLN  198 (452)
T ss_dssp             CTTSSCEEEEE
T ss_pred             cCCCcEEEEEe
Confidence            99877776655

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.32  E-value=0.57  Score=42.07  Aligned_cols=192  Identities=19%  Similarity=0.198  Sum_probs=103.8

Q ss_pred             EEECCCCCEEEEE------------ccCCcEEEEEcCCCc-eeEEeeecC-----CCCCeeEEEECC--CCC-eEEEEEc
Q psy13076        137 AKYSPSGFYIASG------------DISGKVRIWDTVNKE-HILKNEFHP-----IGGPIKDIAWSP--DNQ-RMVVVGE  195 (423)
Q Consensus       137 ~~~sp~~~~l~s~------------~~d~~i~vwd~~~~~-~~~~~~~~~-----~~~~v~~v~~s~--~~~-~~~~~~~  195 (423)
                      +...|+|..++++            ..+|.|.++|..+.. .........     .......+.+.+  ++. +++++..
T Consensus        55 i~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh  134 (355)
T 3sre_A           55 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  134 (355)
T ss_dssp             EEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             eEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEEC
Confidence            4457777666665            268999999987431 111112211     112345566654  444 5666655


Q ss_pred             CC-ceeeEEEeecCCc-c---eecccC-CCcceeEEEEecCCCeeEEEEe-----------------CCCeEEEEcCCCc
Q psy13076        196 GR-ERFGHVFMSETGT-S---VGEISG-QSKPINSCDFKPSRPFRIITGS-----------------EDNTIAVFEGPPF  252 (423)
Q Consensus       196 ~~-~~~~~~~~~~~~~-~---~~~~~~-~~~~i~~~~~~~~~~~~~~s~s-----------------~d~~i~~~~~~~~  252 (423)
                      .. .....++..+... .   +..+.+ .....+.+.+.+++.+ .++..                 ..+.+.-++..  
T Consensus       135 ~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--  211 (355)
T 3sre_A          135 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--  211 (355)
T ss_dssp             STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--
T ss_pred             CCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEEEEECC--
Confidence            53 2334455544432 1   122222 2345778888888764 23322                 12445555532  


Q ss_pred             eeeeeccccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCC-ccce--ecccccccCCCeEEEEECC-CCCeEEEEeCC
Q psy13076        253 KFKMTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGAS-ADLV--SELGNPAHKGGVYAVAWKP-DGTQLLTASGD  327 (423)
Q Consensus       253 ~~~~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~-~~~~--~~~~~~~~~~~i~~l~~~~-~~~~l~s~s~d  327 (423)
                      +... ....-...+.++|+|||+.+..+. ..+.|..|+... ++..  ..+.   ..+....+++++ +|++.+++..+
T Consensus       212 ~~~~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          212 DVRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             CCEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEESC
T ss_pred             eEEE-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecCC
Confidence            2111 122234568899999998776655 578999999753 3221  1221   235578899999 59988877654


Q ss_pred             C-cEEEEec
Q psy13076        328 K-TCKLWDI  335 (423)
Q Consensus       328 ~-~i~iwd~  335 (423)
                      + .|..||.
T Consensus       288 g~~v~~~~P  296 (355)
T 3sre_A          288 GMRIFFYDA  296 (355)
T ss_dssp             HHHHHSCCT
T ss_pred             ceEEEEECC
Confidence            3 4444443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.07  E-value=1.2  Score=43.53  Aligned_cols=380  Identities=11%  Similarity=0.039  Sum_probs=188.8

Q ss_pred             CEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCC-eEEEecCCCceEEeecCCcceeecccCCCCCCceE
Q psy13076         17 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIV   95 (423)
Q Consensus        17 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~-~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~   95 (423)
                      .+|+.+ ..+.|+..|++..........+.-+.+..|+|.+.+. +.++-..++.|+.++.+.......+.. ....+.-
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g~~~P~G   84 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-GLDYPEG   84 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCE
T ss_pred             cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-CCCCcce
Confidence            356654 5679999999753322211122234677999998655 456667789999998876433222211 1123334


Q ss_pred             EeeCCCCCeEEEec--CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc--CCcEEEEEcCCCceeEEeee
Q psy13076         96 LGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI--SGKVRIWDTVNKEHILKNEF  171 (423)
Q Consensus        96 ~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~  171 (423)
                      ++.++.++.+.++.  ...+.+.+++...........-.....+++.|...+|.-.+.  .+.|...++........  .
T Consensus        85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l--~  162 (628)
T 4a0p_A           85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL--V  162 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--E
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE--E
Confidence            55565555544443  457777777654332233234456789999996555555543  46777777654332111  1


Q ss_pred             cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC
Q psy13076        172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP  251 (423)
Q Consensus       172 ~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~  251 (423)
                      . .-.....|+++++++.|..+-...... .....+.... ..+.........+++..  ..+.++-...+.|...+...
T Consensus       163 ~-~~~~P~GlalD~~~~~LY~aD~~~~~I-~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~t  237 (628)
T 4a0p_A          163 P-NVGRANGLTIDYAKRRLYWTDLDTNLI-ESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTS  237 (628)
T ss_dssp             C-SCSSEEEEEEETTTTEEEEEETTTTEE-EEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred             C-CCCCcceEEEccccCEEEEEECCCCEE-EEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCC
Confidence            1 123467899999888777765544332 2333332221 22222333344566554  23344444456666665211


Q ss_pred             ce---eee----------ecc------cc-----ccCe--EE--------EEECC-------CC-------CEEEEEEec
Q psy13076        252 FK---FKM----------TKQ------EH-----SRFV--QA--------VRYSP-------SG-------SHFASAGFD  283 (423)
Q Consensus       252 ~~---~~~----------~~~------~~-----~~~i--~~--------l~~s~-------~g-------~~l~s~s~d  283 (423)
                      .+   ...          ...      ..     ...-  .|        -+..|       ++       .+|+.+ ..
T Consensus       238 g~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s-~~  316 (628)
T 4a0p_A          238 GQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFS-QK  316 (628)
T ss_dssp             CCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEE-ET
T ss_pred             CCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeee-cc
Confidence            10   000          000      00     0000  01        11112       22       122222 12


Q ss_pred             CeEEEEECCCccce-ecccccccCCCeEEEEECCCCCeEEEE-eCCCcEEEEecCCcceeeeeeeC------ceeEeeEE
Q psy13076        284 GKVFLYDGASADLV-SELGNPAHKGGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAVSEFLMG------NQVEDQQV  355 (423)
Q Consensus       284 g~i~vwd~~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~------~~~~~~~~  355 (423)
                      ..|+-..+...... ..+.. .....+.+++|++.+..|.-+ ...+.|+.++...... .++...      .-.....+
T Consensus       317 ~~i~~i~l~~~~~~~~~l~~-~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~~~~~~~p~gl  394 (628)
T 4a0p_A          317 SAINRMVIDEQQSPDIILPI-HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-FTVVVSSVPSQNLEIQPYDL  394 (628)
T ss_dssp             TEEEEECCCTTCCCCEECCC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC--------CCCEEEE
T ss_pred             ceEEEEecccccCceEEEEe-hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-eEEEEcccccccccCCcceE
Confidence            33333333221110 01111 112457789999866655544 4467788887754321 122111      01123456


Q ss_pred             EEEecCcEEE-EEeCCCcEEEEecCCCCCceEE-eccCCCceeEEEecCC-CCeEEEe
Q psy13076        356 SCLWQGDYLL-TVSLSGFISYLDVNNPSTPIRV-IKGHNKPITALALSPD-RGTVFTG  410 (423)
Q Consensus       356 ~~~~~g~~l~-~~~~~~~i~~~~~~~~~~~~~~-~~~h~~~v~~i~~sp~-~~~l~s~  410 (423)
                      ++.|.+..|. +-+..+.|.+.+....  .... +.......++|++.|. +.++.|-
T Consensus       395 AvD~~~~nLY~td~~~~~I~v~~~~G~--~~~~l~~~~l~~Pr~iavdp~~g~ly~tD  450 (628)
T 4a0p_A          395 SIDIYSRYIYWTCEATNVINVTRLDGR--SVGVVLKGEQDRPRAVVVNPEKGYMYFTN  450 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSC--EEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred             EeeccCCeEEEEcCCCCEEEEEECCCC--eEEEEEeCCCCceeeEEEecCCCeEEEee
Confidence            6667666554 4455667777776532  2222 2334456899999994 4444553

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.03  E-value=0.8  Score=41.16  Aligned_cols=99  Identities=15%  Similarity=0.186  Sum_probs=55.3

Q ss_pred             CceeEEEEeCCCCeEEEecCCCceEEeecCCcc-eeeccc--CCCCCCceEEeeCCC----CCeEEEecC--------Ce
Q psy13076         48 KPITALALSPDRGTVFTGSHDGFITRWNAKTEY-IFATLP--RTQRGQPIVLGGDPK----GKNFLYTNG--------NS  112 (423)
Q Consensus        48 ~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~-~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~--------~~  112 (423)
                      ..-..++|.|+++++++- .++.|++++. ++. .+..+.  ......+.-+..+|+    +.++++...        +.
T Consensus        29 ~~P~~ia~~pdG~l~V~e-~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTE-RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEEe-CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            345689999999866654 5599999974 333 222221  111233455677776    555555432        45


Q ss_pred             EEEEecCCC--cc------ccccc---CCcceEEEEEECCCCCEEEEEc
Q psy13076        113 VIIRNIENP--AI------SDIYT---EHSCAVNVAKYSPSGFYIASGD  150 (423)
Q Consensus       113 ~~i~~~~~~--~~------~~~~~---~h~~~i~~~~~sp~~~~l~s~~  150 (423)
                      +..++.+..  .+      ...+.   .|.  ...+.|.|||.+.++-+
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEEC
Confidence            555555433  11      11111   232  35689999998777643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.92  E-value=0.56  Score=38.72  Aligned_cols=143  Identities=10%  Similarity=0.025  Sum_probs=75.1

Q ss_pred             cCeEEEEECCCCCEEEEEEecCeEEEEECCCccce------ecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        263 RFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV------SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       263 ~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      ..+..++|+|+|.+.+.  .+|.++-.+..+....      ..+...+-+. -.++.|+|+|.+.++  .|+.|.-++..
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            35779999999987766  7888877776542211      1111111111 367899999998887  56988877764


Q ss_pred             CcceeeeeeeCcee------EeeEEEEEecCcEEEEEeCCCcEEEEecCCCC------CceEEeccCCCceeEEEecCCC
Q psy13076        337 TKSAVSEFLMGNQV------EDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS------TPIRVIKGHNKPITALALSPDR  404 (423)
Q Consensus       337 ~~~~i~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~------~~~~~~~~h~~~v~~i~~sp~~  404 (423)
                      +...-.-......+      ....+.+.++|...++.  ++.++........      .......+....-+-+.|.|++
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            32211000000010      11223334455544444  7776443222111      0011111333344557799999


Q ss_pred             CeEEEecCCC
Q psy13076        405 GTVFTGSHDG  414 (423)
Q Consensus       405 ~~l~s~s~D~  414 (423)
                      .+.+..  ++
T Consensus       194 ~l~~v~--~g  201 (236)
T 1tl2_A          194 TLFGVQ--GG  201 (236)
T ss_dssp             CEEEEE--TT
T ss_pred             cEEEEe--CC
Confidence            877655  55

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.40  E-value=1.4  Score=39.49  Aligned_cols=230  Identities=10%  Similarity=0.071  Sum_probs=110.1

Q ss_pred             ceEEeeCCCCCeEEEecCCeEEEEecCCCc-ccc---cccCCcceEEEEEECCC---CCEEEEEcc----C----CcEEE
Q psy13076         93 PIVLGGDPKGKNFLYTNGNSVIIRNIENPA-ISD---IYTEHSCAVNVAKYSPS---GFYIASGDI----S----GKVRI  157 (423)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~---~~~~h~~~i~~~~~sp~---~~~l~s~~~----d----~~i~v  157 (423)
                      +..+.++|+|..++......+.+.+. ++. ...   ++..-......++++|+   +..|..+..    +    ..|..
T Consensus        31 P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r  109 (354)
T 3a9g_A           31 PWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIR  109 (354)
T ss_dssp             EEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEE
Confidence            44556667777666655566666542 332 111   11122345788999997   444444332    2    45666


Q ss_pred             EEcCCCc------eeEEeeecC-CCCCeeEEEECCCCCeEEEEEcCCc---------eeeEEEeecC-Cc--------ce
Q psy13076        158 WDTVNKE------HILKNEFHP-IGGPIKDIAWSPDNQRMVVVGEGRE---------RFGHVFMSET-GT--------SV  212 (423)
Q Consensus       158 wd~~~~~------~~~~~~~~~-~~~~v~~v~~s~~~~~~~~~~~~~~---------~~~~~~~~~~-~~--------~~  212 (423)
                      ++.....      ......+.. .......++|.|||...++.++...         ..+.++..+. +.        ..
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~  189 (354)
T 3a9g_A          110 GRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS  189 (354)
T ss_dssp             EEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC
T ss_pred             EEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC
Confidence            7655431      111111111 1112467999999986665543211         1123332221 11        00


Q ss_pred             ecccCCCcceeEEEEec-CCCeeEEEEeC-CC--eEEEEcCCC---------------c-eeeeeccccccCeEEEEEC-
Q psy13076        213 GEISGQSKPINSCDFKP-SRPFRIITGSE-DN--TIAVFEGPP---------------F-KFKMTKQEHSRFVQAVRYS-  271 (423)
Q Consensus       213 ~~~~~~~~~i~~~~~~~-~~~~~~~s~s~-d~--~i~~~~~~~---------------~-~~~~~~~~~~~~i~~l~~s-  271 (423)
                      ..+..-.+....++|+| .+.. .++-.. +.  .|.+.....               + .....+.........++|- 
T Consensus       190 ~i~a~G~rnp~Gla~d~~~g~l-~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~  268 (354)
T 3a9g_A          190 PIWSYGHRNPQGIDWHRASGVM-VATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVH  268 (354)
T ss_dssp             CEEEECCSCCCEEEECTTTCCE-EEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECC
T ss_pred             cEEEEccCCcceEEEeCCCCCE-EEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEEC
Confidence            11111123456788888 4442 332221 11  233322100               0 0001110112245677773 


Q ss_pred             ------CCCCEEEEEEecCeEEEEECCCc-cce--ecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076        272 ------PSGSHFASAGFDGKVFLYDGASA-DLV--SELGNPAHKGGVYAVAWKPDGTQLLTAS  325 (423)
Q Consensus       272 ------~~g~~l~s~s~dg~i~vwd~~~~-~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s  325 (423)
                            .+|.++++.-..+.|...+.... +..  ..+. ......+.++++.|||.+.++..
T Consensus       269 g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          269 GDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             SSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence                  56766666556678888887643 221  1221 11235689999999998777653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.14  E-value=1.9  Score=39.42  Aligned_cols=143  Identities=17%  Similarity=0.241  Sum_probs=83.8

Q ss_pred             CCCCEEEEEEecCeEEEEECCCccceecccccc--cCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcce---------
Q psy13076        272 PSGSHFASAGFDGKVFLYDGASADLVSELGNPA--HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSA---------  340 (423)
Q Consensus       272 ~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~---------  340 (423)
                      .+|.-++.+ .++.||.-+.......+.+..+.  --..+..+..+|+|++|+..+ +.+|.|-.+..+..         
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence            344444333 34566665555333333333221  123567899999999998875 56899998873221         


Q ss_pred             ---eeeeeeCcee---EeeEEEEEe-----cCcEEEEEeCCCcEEEEecCC-CCCceEEec---------cCCCceeEEE
Q psy13076        341 ---VSEFLMGNQV---EDQQVSCLW-----QGDYLLTVSLSGFISYLDVNN-PSTPIRVIK---------GHNKPITALA  399 (423)
Q Consensus       341 ---i~~~~~~~~~---~~~~~~~~~-----~g~~l~~~~~~~~i~~~~~~~-~~~~~~~~~---------~h~~~v~~i~  399 (423)
                         .+.+..+...   ...-..+.|     .|..|++...|+.|++||+.. .+.|. .+.         .....|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence               1233332110   111222333     578999999999999999985 33333 332         2336799999


Q ss_pred             ecCCCCeEE--EecCCCcEE
Q psy13076        400 LSPDRGTVF--TGSHDGFIT  417 (423)
Q Consensus       400 ~sp~~~~l~--s~s~D~~i~  417 (423)
                      |.+++-.|.  +...+|-|+
T Consensus       187 Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEE
T ss_pred             EcCCCcEEEEEecCCCCCEE
Confidence            999765444  455777664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.75  E-value=1.9  Score=37.40  Aligned_cols=144  Identities=13%  Similarity=0.111  Sum_probs=71.3

Q ss_pred             CCCEEEEEEecC-----eEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC-----CcEEEEecCCcce
Q psy13076        273 SGSHFASAGFDG-----KVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETKSA  340 (423)
Q Consensus       273 ~g~~l~s~s~dg-----~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~  340 (423)
                      +++.++.|+.++     .+.+||..+.+-  +..+...  ...-..+.+  +++.++.|+.+     ..+.+||+.+.+-
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W  187 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA--REGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW  187 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC--CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC--cccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence            567777776543     578888766442  2222111  111122222  67777777654     4588899877643


Q ss_pred             eeeeeeCceeEeeEEEEEecCcEEEEEeCC-----CcEEEEecCCCCCceEEeccCC-CceeEEEecCCCCeEEEecCC-
Q psy13076        341 VSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----GFISYLDVNNPSTPIRVIKGHN-KPITALALSPDRGTVFTGSHD-  413 (423)
Q Consensus       341 i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~~~h~-~~v~~i~~sp~~~~l~s~s~D-  413 (423)
                      ...-....+.. ....+..++..++.|..+     ..+..||..+..- . .+.... ......+..-++++++.||.+ 
T Consensus       188 ~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-~-~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  264 (301)
T 2vpj_A          188 TNVTPMATKRS-GAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW-T-TVTSMTTPRCYVGATVLRGRLYAIAGYDG  264 (301)
T ss_dssp             EEECCCSSCCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE-E-EECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             EeCCCCCcccc-cceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcE-E-ECCCCCCcccceeEEEECCEEEEEcCcCC
Confidence            22111111111 112223466666776653     4578888865321 1 111000 011111122267788888865 


Q ss_pred             ----CcEEEeeCCC
Q psy13076        414 ----GFITRWNAKT  423 (423)
Q Consensus       414 ----~~i~~W~~~~  423 (423)
                          ..+.+||+++
T Consensus       265 ~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          265 NSLLSSIECYDPII  278 (301)
T ss_dssp             SSBEEEEEEEETTT
T ss_pred             CcccccEEEEcCCC
Confidence                3566777653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.70  E-value=2.2  Score=38.03  Aligned_cols=33  Identities=27%  Similarity=0.236  Sum_probs=25.3

Q ss_pred             cCceeEEEEeCCCCeEEEecCCCceEEeecCCc
Q psy13076         47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTE   79 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~   79 (423)
                      -..-..++|.|+++++++--..|.|++++..++
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g   63 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG   63 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence            345568999999998887766899988876544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.67  E-value=1.1  Score=41.93  Aligned_cols=62  Identities=16%  Similarity=0.306  Sum_probs=38.5

Q ss_pred             CeEEEEECCCCCEEEEEEecCeEEEEECCCccc--eeccccc----ccCCCeEEEEECCC----CCeEEEEe
Q psy13076        264 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADL--VSELGNP----AHKGGVYAVAWKPD----GTQLLTAS  325 (423)
Q Consensus       264 ~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~----~~~~~i~~l~~~~~----~~~l~s~s  325 (423)
                      ....++|.|+|+++++-...+.|+.++..+++.  +..+...    ...+....|+|+|+    +.+.++-+
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            356899999999777654445798887654432  2222211    12466789999994    44444443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.49  E-value=2.2  Score=37.06  Aligned_cols=144  Identities=13%  Similarity=0.137  Sum_probs=70.4

Q ss_pred             CCCEEEEEEec------CeEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeC---------CCcEEEEec
Q psy13076        273 SGSHFASAGFD------GKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASG---------DKTCKLWDI  335 (423)
Q Consensus       273 ~g~~l~s~s~d------g~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~---------d~~i~iwd~  335 (423)
                      ++++++.|+.+      ..+.+||..+.+-  +..+...  ...-..+.+  +++.++.|+.         -..+.+||+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~  176 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ--RCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDP  176 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC--CBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEET
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC--cceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCC
Confidence            66777778766      3588888776542  1112111  111122222  5666666653         345888998


Q ss_pred             CCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCC-----CcEEEEecCCCCC-ceEEeccCCCceeEEEecCCCCeEEE
Q psy13076        336 ETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----GFISYLDVNNPST-PIRVIKGHNKPITALALSPDRGTVFT  409 (423)
Q Consensus       336 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~i~~~~~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~l~s  409 (423)
                      .+.+-...-....... ....+..++..++.|..+     ..+..||..+..- .+..+.........+.+  ++++++.
T Consensus       177 ~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~  253 (306)
T 3ii7_A          177 ATETWTELCPMIEARK-NHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVL  253 (306)
T ss_dssp             TTTEEEEECCCSSCCB-SCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEE
T ss_pred             CCCeEEECCCccchhh-cceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEE
Confidence            8764322111111111 112223366666666543     3577888765311 00001100111122222  6778888


Q ss_pred             ecCC-----CcEEEeeCCC
Q psy13076        410 GSHD-----GFITRWNAKT  423 (423)
Q Consensus       410 ~s~D-----~~i~~W~~~~  423 (423)
                      ||.+     ..+.+||+++
T Consensus       254 GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          254 AGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             ECBCSSSBCCEEEEEETTT
T ss_pred             eCcCCCeeeeeEEEEcCCC
Confidence            8854     4567777653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.37  E-value=0.53  Score=38.82  Aligned_cols=103  Identities=10%  Similarity=-0.081  Sum_probs=57.4

Q ss_pred             CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC-ceeE------eeEEEEEecCcEEEEEeCCCcEEEEecCC
Q psy13076        308 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG-NQVE------DQQVSCLWQGDYLLTVSLSGFISYLDVNN  380 (423)
Q Consensus       308 ~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~-~~~~------~~~~~~~~~g~~l~~~~~~~~i~~~~~~~  380 (423)
                      .+..++|+|+|.+.+.  .++.+.-.+..+.... .+... ..+.      -..+.+.++|...++  .+|.|+.++-.+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            4679999999987666  6777666565442111 01000 0010      122333345555555  669998887533


Q ss_pred             CCCc------eEEeccCCCceeEEEecCCCCeEEEecCCCcEE
Q psy13076        381 PSTP------IRVIKGHNKPITALALSPDRGTVFTGSHDGFIT  417 (423)
Q Consensus       381 ~~~~------~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~  417 (423)
                      ....      .++..+-=+.+..|.|.|++.+.+..  |+.++
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            2211      11112112468999999999888766  66553

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.03  E-value=2.7  Score=36.36  Aligned_cols=144  Identities=17%  Similarity=0.143  Sum_probs=71.1

Q ss_pred             CCCEEEEEEecC-----eEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC-------CcEEEEecCCc
Q psy13076        273 SGSHFASAGFDG-----KVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD-------KTCKLWDIETK  338 (423)
Q Consensus       273 ~g~~l~s~s~dg-----~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-------~~i~iwd~~~~  338 (423)
                      +++.++.|+.++     .+.+||..+.+-  +..+..  .......+.+  +++.++.|+.+       ..+.+||+.+.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~  183 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT--RRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN  183 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS--CCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC--cccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence            567777787654     577888766542  112211  1111122222  56666666542       35888998776


Q ss_pred             ceeeeeeeCceeEeeEEEEEecCcEEEEEeCC-----CcEEEEecCCCCCceEEeccCCCc-eeEEEecCCCCeEEEecC
Q psy13076        339 SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----GFISYLDVNNPSTPIRVIKGHNKP-ITALALSPDRGTVFTGSH  412 (423)
Q Consensus       339 ~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~~~h~~~-v~~i~~sp~~~~l~s~s~  412 (423)
                      +-...-........ ...+..++..++.|..+     ..+..||..+..-  ..+.....+ -..-+...++++++.||.
T Consensus       184 ~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~~~~r~~~~~~~~~~~i~v~GG~  260 (302)
T 2xn4_A          184 EWTYIAEMSTRRSG-AGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAW--RQVADMNMCRRNAGVCAVNGLLYVVGGD  260 (302)
T ss_dssp             EEEEECCCSSCCBS-CEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             cEEECCCCcccccc-ccEEEECCEEEEECCCCCCcccceEEEEeCCCCCE--eeCCCCCCccccCeEEEECCEEEEECCc
Confidence            43221111111111 12233467777777653     3578888765321  111111000 011111236778888886


Q ss_pred             CC-----cEEEeeCCC
Q psy13076        413 DG-----FITRWNAKT  423 (423)
Q Consensus       413 D~-----~i~~W~~~~  423 (423)
                      ++     .+.+||+++
T Consensus       261 ~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          261 DGSCNLASVEYYNPTT  276 (302)
T ss_dssp             CSSSBCCCEEEEETTT
T ss_pred             CCCcccccEEEEcCCC
Confidence            64     478888753

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.62  E-value=3.3  Score=35.99  Aligned_cols=143  Identities=13%  Similarity=0.138  Sum_probs=70.8

Q ss_pred             CCCEEEEEEecC-----eEEEEECCCccce--ecccccccCCCeEEEEECCCCCeEEEEeCC-----CcEEEEecCCcce
Q psy13076        273 SGSHFASAGFDG-----KVFLYDGASADLV--SELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETKSA  340 (423)
Q Consensus       273 ~g~~l~s~s~dg-----~i~vwd~~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~  340 (423)
                      +++.++.|+.++     .+.+||..+.+-.  ..+..  ....-..+.+  +++.++.|+.+     ..+.+||+.+.+-
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  196 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT--RRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW  196 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS--CCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc--cccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence            667777777553     5778887665421  11211  1111122333  56777777654     4588899876643


Q ss_pred             eeeeeeCceeEeeEEEEEecCcEEEEEeCC-----CcEEEEecCCCCCceEEeccCC--CceeEEEecCCCCeEEEecCC
Q psy13076        341 VSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----GFISYLDVNNPSTPIRVIKGHN--KPITALALSPDRGTVFTGSHD  413 (423)
Q Consensus       341 i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~~~h~--~~v~~i~~sp~~~~l~s~s~D  413 (423)
                      ...-....+.... ..+..++..++.|..+     ..+..||..+..-  ..+....  ..-.+++. -++++++.||.+
T Consensus       197 ~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~  272 (308)
T 1zgk_A          197 RMITAMNTIRSGA-GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW--TFVAPMKHRRSALGITV-HQGRIYVLGGYD  272 (308)
T ss_dssp             EECCCCSSCCBSC-EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred             eeCCCCCCccccc-eEEEECCEEEEEeCCCCCCccceEEEEeCCCCcE--EECCCCCCCccceEEEE-ECCEEEEEcCcC
Confidence            2211111111111 1223366666777554     4578888765311  1111000  00112222 267788888854


Q ss_pred             C-----cEEEeeCCC
Q psy13076        414 G-----FITRWNAKT  423 (423)
Q Consensus       414 ~-----~i~~W~~~~  423 (423)
                      +     .+.+||+++
T Consensus       273 ~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          273 GHTFLDSVECYDPDT  287 (308)
T ss_dssp             SSCBCCEEEEEETTT
T ss_pred             CCcccceEEEEcCCC
Confidence            3     466777653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.77  E-value=4.5  Score=35.11  Aligned_cols=143  Identities=11%  Similarity=0.094  Sum_probs=69.1

Q ss_pred             CCCEEEEEEe----c-----CeEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC-----CcEEEEecC
Q psy13076        273 SGSHFASAGF----D-----GKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIE  336 (423)
Q Consensus       273 ~g~~l~s~s~----d-----g~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----~~i~iwd~~  336 (423)
                      ++++++.|+.    +     ..+.+||..+.+-  +..+...  ...-..+.+  +++.++.|+.+     ..+.+||+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP--RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC--CBTCEEEEE--TTEEEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC--ccccEEEEE--CCEEEEEcCCCCCcccccEEEECCC
Confidence            5666677665    2     3578888766542  1112111  111122333  56677776643     358889987


Q ss_pred             CcceeeeeeeCceeEeeEEEEEecCcEEEEEeCC-----CcEEEEecCCCCCceEEecc--CCCceeEEEecCCCCeEEE
Q psy13076        337 TKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS-----GFISYLDVNNPSTPIRVIKG--HNKPITALALSPDRGTVFT  409 (423)
Q Consensus       337 ~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~l~s  409 (423)
                      +.+-...-........ ...+..++..++.|..+     ..+..||..+..-  ..+..  ....-.+++.. ++++++.
T Consensus       146 ~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~-~~~iyv~  221 (308)
T 1zgk_A          146 RDEWHLVAPMLTRRIG-VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW--RMITAMNTIRSGAGVCVL-HNCIYAA  221 (308)
T ss_dssp             TTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE-TTEEEEE
T ss_pred             CCeEeECCCCCccccc-eEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeE--eeCCCCCCccccceEEEE-CCEEEEE
Confidence            7543221111111111 11223366666776543     3577888765311  11100  00011112222 6778888


Q ss_pred             ecCC-----CcEEEeeCCC
Q psy13076        410 GSHD-----GFITRWNAKT  423 (423)
Q Consensus       410 ~s~D-----~~i~~W~~~~  423 (423)
                      ||.+     ..+.+||+++
T Consensus       222 GG~~~~~~~~~v~~yd~~~  240 (308)
T 1zgk_A          222 GGYDGQDQLNSVERYDVET  240 (308)
T ss_dssp             CCBCSSSBCCCEEEEETTT
T ss_pred             eCCCCCCccceEEEEeCCC
Confidence            8765     4577787653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.08  E-value=6.3  Score=35.17  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=36.6

Q ss_pred             CeEEEEECC-------CCCEEEEEEecCeEEEEECCCccceeccc-ccccCCCeEEEEECCCCCeEEEE
Q psy13076        264 FVQAVRYSP-------SGSHFASAGFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKPDGTQLLTA  324 (423)
Q Consensus       264 ~i~~l~~s~-------~g~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~s~  324 (423)
                      .+..++|.+       +|.++++.-..+.|...++..++...... .......+.++++.|||.+.++.
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            355666653       46666665567777777766543222111 01123478999999999876653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.08  E-value=6.2  Score=35.12  Aligned_cols=139  Identities=17%  Similarity=0.152  Sum_probs=73.8

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCC-ceeec----ccccCceeEEEEeCC----CCeEEEe--cCCCceEEeecC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPST-PIRVI----KGHNKPITALALSPD----RGTVFTG--SHDGFITRWNAK   77 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~~~~----~gh~~~V~~l~~~~~----~~~l~sg--~~D~~i~vW~~~   77 (423)
                      .+++.+||+++++--..|.|++++..+... ++..+    ..-.+....|+++|+    +.+.++-  ..++.|.-|...
T Consensus        36 ~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~  115 (347)
T 3das_A           36 GLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYD  115 (347)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBC
T ss_pred             EEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeC
Confidence            567778998777643489999998643221 12111    223456789999995    4444432  344555555544


Q ss_pred             Cc-----------ceeecccCCCCCCceEEeeCCCCCeEEEecC--------------CeEEEEecCCCc-------ccc
Q psy13076         78 TE-----------YIFATLPRTQRGQPIVLGGDPKGKNFLYTNG--------------NSVIIRNIENPA-------ISD  125 (423)
Q Consensus        78 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~-------~~~  125 (423)
                      .+           .++..++....+..-.+.+.|+|.+++...+              ..+.-.+.+...       -..
T Consensus       116 ~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~  195 (347)
T 3das_A          116 EKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSP  195 (347)
T ss_dssp             TTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCC
T ss_pred             CCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCe
Confidence            31           1222232211222234667889987776421              223323333210       011


Q ss_pred             cc-cCCcceEEEEEECCCCCEEEE
Q psy13076        126 IY-TEHSCAVNVAKYSPSGFYIAS  148 (423)
Q Consensus       126 ~~-~~h~~~i~~~~~sp~~~~l~s  148 (423)
                      ++ .||.+ ...++|+|+|.+.++
T Consensus       196 i~a~G~RN-p~Gla~dp~G~L~~~  218 (347)
T 3das_A          196 VYSYGHRN-VQGLAWDDKQRLFAS  218 (347)
T ss_dssp             EEEBCCSB-CCEEEECTTCCEEEE
T ss_pred             EEeeCCCC-cceEEECCCCCEEEE
Confidence            22 25654 457889998876665

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=91.99  E-value=0.67  Score=41.24  Aligned_cols=114  Identities=8%  Similarity=0.039  Sum_probs=67.9

Q ss_pred             eEEEEeCCCeEEEEcCCCceeeeeccccc-cCeEEEEE--CCCCCEEEEE--EecCeEEEEECCCccceecccccc--cC
Q psy13076        234 RIITGSEDNTIAVFEGPPFKFKMTKQEHS-RFVQAVRY--SPSGSHFASA--GFDGKVFLYDGASADLVSELGNPA--HK  306 (423)
Q Consensus       234 ~~~s~s~d~~i~~~~~~~~~~~~~~~~~~-~~i~~l~~--s~~g~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~--~~  306 (423)
                      .++.++.||.+.-+|....+...+..... .++....-  .+.+..++.+  +.||.+..++..+|.....+..+.  ..
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            47788999999999988777777665431 12211110  0112233333  579999999988775433222110  11


Q ss_pred             CCeEE---EEE-CC----CCCeEEEEeCCCcEEEEecCCcceeeeeeeC
Q psy13076        307 GGVYA---VAW-KP----DGTQLLTASGDKTCKLWDIETKSAVSEFLMG  347 (423)
Q Consensus       307 ~~i~~---l~~-~~----~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~  347 (423)
                      ..+..   ... .+    .+..+.+++.++++.-.|.++++.+.++..+
T Consensus        92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            11211   001 01    3557889999999999999999998887544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.83  E-value=6.7  Score=34.98  Aligned_cols=139  Identities=15%  Similarity=0.122  Sum_probs=71.9

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCC-Ccee----ecccccCceeEEEEeCC----CCeEEEecC-------CCceE
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIR----VIKGHNKPITALALSPD----RGTVFTGSH-------DGFIT   72 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~----~~~gh~~~V~~l~~~~~----~~~l~sg~~-------D~~i~   72 (423)
                      .+++.+||++|+.+...|.|++++.+... +++.    ++....+....++++|+    +.+.++-..       ...|.
T Consensus        22 ~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~  101 (353)
T 2g8s_A           22 ALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVG  101 (353)
T ss_dssp             EEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEE
Confidence            56777789844456788999999853211 1111    11122345689999995    444444332       23455


Q ss_pred             EeecCCc-------c-eeecccC--CCCCCceEEeeCCCCCeEEEecC--------------CeEEEEecCCCc------
Q psy13076         73 RWNAKTE-------Y-IFATLPR--TQRGQPIVLGGDPKGKNFLYTNG--------------NSVIIRNIENPA------  122 (423)
Q Consensus        73 vW~~~~~-------~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~------  122 (423)
                      .++....       + ++..++.  ......--+.++|+|.+++...+              ..+...+.+...      
T Consensus       102 r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf  181 (353)
T 2g8s_A          102 YGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPF  181 (353)
T ss_dssp             EEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTT
T ss_pred             EEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCC
Confidence            5555321       1 2222221  11112234677889977766432              134444444220      


Q ss_pred             ------ccccc-cCCcceEEEEEECC-CCCEEEE
Q psy13076        123 ------ISDIY-TEHSCAVNVAKYSP-SGFYIAS  148 (423)
Q Consensus       123 ------~~~~~-~~h~~~i~~~~~sp-~~~~l~s  148 (423)
                            ...++ .+|. ....++|+| +|++.++
T Consensus       182 ~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          182 IKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             cCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence                  12222 2444 457889999 6655554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.83  E-value=5.8  Score=34.19  Aligned_cols=63  Identities=21%  Similarity=0.226  Sum_probs=35.5

Q ss_pred             CCCEEEEEEec-----CeEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC-----CcEEEEecCCcc
Q psy13076        273 SGSHFASAGFD-----GKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETKS  339 (423)
Q Consensus       273 ~g~~l~s~s~d-----g~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----~~i~iwd~~~~~  339 (423)
                      +++.++.|+.+     ..+.+||..+.+-  +..+..  .......+.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus       206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT--PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC--cccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            56777777764     3588899876542  222211  1111222333  56777777665     357788877653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.02  E-value=7.1  Score=33.71  Aligned_cols=63  Identities=22%  Similarity=0.157  Sum_probs=35.8

Q ss_pred             CCCEEEEEEecC-----eEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC-----CcEEEEecCCcc
Q psy13076        273 SGSHFASAGFDG-----KVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETKS  339 (423)
Q Consensus       273 ~g~~l~s~s~dg-----~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----~~i~iwd~~~~~  339 (423)
                      ++++++.|+.++     .+.+||..+.+-  +..+..  .......+.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus       200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW--KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC--CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC--CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            567777777653     578888876542  222211  1112223333  56777777754     457788877653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.01  E-value=0.97  Score=42.79  Aligned_cols=104  Identities=16%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             EEEEECCCCCEEEEEE-ecCeEEEEECCCccc-----e----ec-ccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEe
Q psy13076        266 QAVRYSPSGSHFASAG-FDGKVFLYDGASADL-----V----SE-LGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD  334 (423)
Q Consensus       266 ~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~-----~----~~-~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd  334 (423)
                      -.+.++|||++++.++ .+.++.++|...-..     +    .. .....-..+....+|+++|....|-.-|..|.-|+
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence            3578899999987766 578999999764211     0    00 00111234567899999996666667899999999


Q ss_pred             cCCc----------ceeeeeeeCceeEeeEE----EEEecCcEEEEEeC
Q psy13076        335 IETK----------SAVSEFLMGNQVEDQQV----SCLWQGDYLLTVSL  369 (423)
Q Consensus       335 ~~~~----------~~i~~~~~~~~~~~~~~----~~~~~g~~l~~~~~  369 (423)
                      +...          ..+.......+......    +..++|++|++..-
T Consensus       406 i~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          406 MEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             HHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             ccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            8753          23333333222221111    12358999988753

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.79  E-value=5.3  Score=35.47  Aligned_cols=52  Identities=15%  Similarity=0.280  Sum_probs=27.3

Q ss_pred             CCCEEEEEEe-c---------CeEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        273 SGSHFASAGF-D---------GKVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       273 ~g~~l~s~s~-d---------g~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      ++++++.|+. +         ..+.+||..+.+-  +..+. +.-...- +++. .+++.++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~-~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGH-VTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSE-EEEE-ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-Ccccccc-eEEE-ECCEEEEEeCcC
Confidence            5677777776 3         3578888876542  11111 0111112 2222 567777777754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.12  E-value=14  Score=34.27  Aligned_cols=61  Identities=11%  Similarity=0.102  Sum_probs=36.9

Q ss_pred             eEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC------CCCCeeEEEECCC---CCeEEEE
Q psy13076        133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP------IGGPIKDIAWSPD---NQRMVVV  193 (423)
Q Consensus       133 ~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~---~~~~~~~  193 (423)
                      ..+.++|.|+|+++++-...+.|++++..++.......+..      -......|+|+|+   +..+.+.
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            45789999999977776544568888754443221112211      1234568999996   5555443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.64  E-value=17  Score=34.60  Aligned_cols=108  Identities=13%  Similarity=0.147  Sum_probs=61.1

Q ss_pred             eEEEEECCCCCeEEEEeC-CCcEEEEecCCcce-----e----eeeeeCceeEeeEEEEE--ecCcEEEEEeCCCcEEEE
Q psy13076        309 VYAVAWKPDGTQLLTASG-DKTCKLWDIETKSA-----V----SEFLMGNQVEDQQVSCL--WQGDYLLTVSLSGFISYL  376 (423)
Q Consensus       309 i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~-----i----~~~~~~~~~~~~~~~~~--~~g~~l~~~~~~~~i~~~  376 (423)
                      ..++..+|||++++.++. +.++.++|+.....     +    ...........-.+...  .+|....+...|.++..|
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkW  404 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKW  404 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEE
Confidence            346888999999887765 78999999874211     0    00001111111122223  355444556689999999


Q ss_pred             ecCCC---------CCceEEeccCCCceeEE-----EecCCCCeEEEe---cCCCcE
Q psy13076        377 DVNNP---------STPIRVIKGHNKPITAL-----ALSPDRGTVFTG---SHDGFI  416 (423)
Q Consensus       377 ~~~~~---------~~~~~~~~~h~~~v~~i-----~~sp~~~~l~s~---s~D~~i  416 (423)
                      |+...         ...+.++.-|-.+-.-.     .-.|||++|++.   |.|+++
T Consensus       405 ni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl  461 (638)
T 3sbq_A          405 NMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFL  461 (638)
T ss_dssp             EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSC
T ss_pred             eccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCc
Confidence            98642         12333444443332222     225789999886   456544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=87.61  E-value=24  Score=35.11  Aligned_cols=378  Identities=12%  Similarity=0.072  Sum_probs=180.9

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeeccc-ccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC-----CC
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR-----TQ   89 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~g-h~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~-----~~   89 (423)
                      |+.|-.|.. +.+..+|..+.  .+..+.. ....|.++...+++.+.+.. . +-+.+++.+++........     ..
T Consensus       202 ~~~lWigt~-~Gl~~~~~~~~--~~~~~~~l~~~~i~~i~~d~~g~lWigT-~-~Gl~~~~~~~~~~~~~~~~~~~~~~l  276 (758)
T 3ott_A          202 RQCVWIGTE-GYLFQYFPSTG--QIKQTEAFHNNSIKSLALDGNGDLLAGT-D-NGLYVYHNDTTPLQHIIHDSRNIQSL  276 (758)
T ss_dssp             TTEEEEEEE-EEEEEEETTTT--EEEEEEEEEEEEEEEEEECTTCCEEEEE-T-TEEEEECCTTSCCEEECCCTTCTTSC
T ss_pred             CCEEEEEEC-CCCeEEcCCCC--eEEeccCCCCCeEEEEEEcCCCCEEEEe-C-CceeEEecCCCcEEEEEcCCCCcCcC
Confidence            553333443 45777886542  2222221 23468888888888766544 3 4577888776543221111     01


Q ss_pred             -CCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc----c--cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCC
Q psy13076         90 -RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI----Y--TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN  162 (423)
Q Consensus        90 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~--~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~  162 (423)
                       ......+..+..|...+.+... +.+... ++.....    .  ......|.++.-..+|.+-+.. .+| +..++..+
T Consensus       277 ~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~G-l~~~~~~~  352 (758)
T 3ott_A          277 TNNIIWNIFADQEHNIWLGTDYG-ISLSRY-NSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-ANG-LIRFTDPA  352 (758)
T ss_dssp             SCSCEEEEEECTTCCEEEEESSS-EEEECC-CC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TTE-EEEESCTT
T ss_pred             CcCeEEEEEEcCCCCEEEEeCCc-cccccc-CCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CCc-ceeecccc
Confidence             1123345567778877776543 333222 1111100    0  0123468888888888766543 344 55565443


Q ss_pred             Cce--eEEeee-----cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc--C-----CCcceeEEEEe
Q psy13076        163 KEH--ILKNEF-----HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS--G-----QSKPINSCDFK  228 (423)
Q Consensus       163 ~~~--~~~~~~-----~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~i~~~~~~  228 (423)
                      ++.  ......     .-....|.++.-.++|...+.. . .+  ...+...++. ...+.  .     ....|.++...
T Consensus       353 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~-~G--L~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~d  427 (758)
T 3ott_A          353 GERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-D-GS--INRYDYATRQ-FIHYNIVDNTGTYNTNWTYYIFED  427 (758)
T ss_dssp             SSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-T-TE--EEEEETTTTE-EEEEEEECCC--CBSSSEEEEEEC
T ss_pred             cccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-C-Cc--HhhcCcCCCc-EEEeecCCCcCCCCCceEEEEEEc
Confidence            211  100000     0012357788877777655432 2 22  1223333322 11111  0     12235555554


Q ss_pred             cCCCeeEEEEeCCCeEEEEcCCC------ceee--ee---cc-ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccc
Q psy13076        229 PSRPFRIITGSEDNTIAVFEGPP------FKFK--MT---KQ-EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL  296 (423)
Q Consensus       229 ~~~~~~~~s~s~d~~i~~~~~~~------~~~~--~~---~~-~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~  296 (423)
                      +++  .+..|+..+-+..++...      ..+.  ..   .. .....|.++...++|.+-+.++..+-+..+|..+++.
T Consensus       428 ~~g--~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~  505 (758)
T 3ott_A          428 TAG--QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREV  505 (758)
T ss_dssp             TTS--EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEE
T ss_pred             CCC--CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCce
Confidence            444  366677666677776321      1111  01   01 1223588899999998765333344588888876543


Q ss_pred             eeccccc--ccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeee-eCce-eEeeEEEEEecCcEEEEEeCCCc
Q psy13076        297 VSELGNP--AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFL-MGNQ-VEDQQVSCLWQGDYLLTVSLSGF  372 (423)
Q Consensus       297 ~~~~~~~--~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~-~~~~-~~~~~~~~~~~g~~l~~~~~~~~  372 (423)
                      .. +...  .....+.++..+.+|+..+. +..| +..+|..+.+.. .+. .+-+ .....+.  .+...|-.++.. .
T Consensus       506 ~~-~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~-~~~~~gl~~~~i~~i~--~~~g~lWi~t~~-G  578 (758)
T 3ott_A          506 TK-LFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQ-SISFGSFSNNEILSMT--CVKNSIWVSTTN-G  578 (758)
T ss_dssp             EE-ECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCC-BCCCCC---CCEEEEE--EETTEEEEEESS-C
T ss_pred             EE-ecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceE-EecccCCCccceEEEE--ECCCCEEEECCC-C
Confidence            32 2111  11245778888888887665 4445 788887655421 111 0000 0111121  123345445544 4


Q ss_pred             EEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEE
Q psy13076        373 ISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR  418 (423)
Q Consensus       373 i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~  418 (423)
                      +..+|..+..  +....-....++...+...+..|.-|+.+|.+++
T Consensus       579 l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~l~fG~~~Gl~~f  622 (758)
T 3ott_A          579 LWIIDRKTMD--ARQQNMTNKRFTSLLFDPKEDCVYLGGADGFGIS  622 (758)
T ss_dssp             EEEEETTTCC--EEEC--CCCCCSEEEEETTTTEEEEECBSEEEEE
T ss_pred             eEEEcCCCce--eEEecCCCCceeeeEEECCCCcEEEecCCceEEE
Confidence            6677766532  2221111223344444433445666777775544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=86.48  E-value=15  Score=31.54  Aligned_cols=103  Identities=17%  Similarity=0.237  Sum_probs=53.3

Q ss_pred             CCCEEEEEEecC-------eEEEEECCCccc--eecccccccCCCeEEEEECCCCCeEEEEeCC-----CcEEEEecCCc
Q psy13076        273 SGSHFASAGFDG-------KVFLYDGASADL--VSELGNPAHKGGVYAVAWKPDGTQLLTASGD-----KTCKLWDIETK  338 (423)
Q Consensus       273 ~g~~l~s~s~dg-------~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d-----~~i~iwd~~~~  338 (423)
                      +++.++.|+.++       .+.+||..+.+-  +..+...  ......+.+  +++.++.|+.+     ..+.+||+.+.
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR--RSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC--CBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc--cccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence            567777776543       478888776542  2222111  111122223  56777777764     36889998876


Q ss_pred             ceeeeeeeCceeEeeEEEEEecCcEEEEEeCCC-----cEEEEecCC
Q psy13076        339 SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSG-----FISYLDVNN  380 (423)
Q Consensus       339 ~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-----~i~~~~~~~  380 (423)
                      +-...-....... ..-.+..++..++.|..++     .+..||..+
T Consensus       231 ~W~~~~~~~~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          231 AWRQVADMNMCRR-NAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             EEEEECCCSSCCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             CEeeCCCCCCccc-cCeEEEECCEEEEECCcCCCcccccEEEEcCCC
Confidence            4322111111111 1112334677667766543     377777765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=85.20  E-value=5.5  Score=42.47  Aligned_cols=129  Identities=12%  Similarity=0.141  Sum_probs=83.9

Q ss_pred             CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcE
Q psy13076        284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY  363 (423)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~  363 (423)
                      .+|.|.|+..+..+.+....     -.+...+|..+.++--. ..++.|||+.++..++++....++-...|.   +...
T Consensus        48 ~~vvIidl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWi---s~~~  118 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI---SLNT  118 (1630)
T ss_pred             ceEEEEECCCCCCccccccc-----chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEec---CCCe
Confidence            37888888876654332211     13456788888777654 678999999998888877665543222221   2333


Q ss_pred             EEEEeCCCcEEEEecCCCCCceEEeccC----CCceeEEEecCCCCeEEEec-------CCCcEEEeeCC
Q psy13076        364 LLTVSLSGFISYLDVNNPSTPIRVIKGH----NKPITALALSPDRGTVFTGS-------HDGFITRWNAK  422 (423)
Q Consensus       364 l~~~~~~~~i~~~~~~~~~~~~~~~~~h----~~~v~~i~~sp~~~~l~s~s-------~D~~i~~W~~~  422 (423)
                      | ..=.+..++.|++.....|++.+..|    ...|..-.-+++.+|++-.|       -.|.+.+|+.+
T Consensus       119 l-~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e  187 (1630)
T 1xi4_A          119 V-ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD  187 (1630)
T ss_pred             e-EEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence            3 33346789999997666777766666    44677788899999987443       24666666653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=84.71  E-value=19  Score=31.15  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=16.4

Q ss_pred             CCCEEEEEEecC-----eEEEEECCCcc
Q psy13076        273 SGSHFASAGFDG-----KVFLYDGASAD  295 (423)
Q Consensus       273 ~g~~l~s~s~dg-----~i~vwd~~~~~  295 (423)
                      +++.++.|+.++     .+.+||..+.+
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            667778887654     57888887653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=84.63  E-value=34  Score=34.02  Aligned_cols=384  Identities=12%  Similarity=0.084  Sum_probs=189.1

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeec-ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec--ccCC-CCC
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVI-KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT--LPRT-QRG   91 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~--~~~~-~~~   91 (423)
                      .+.|-.+..+| +..+|..+..  .... ......|.++.. .++. |..|+.+ .+..+|.+++.....  .... ...
T Consensus        73 ~g~lWigT~~G-l~~yd~~~~~--f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~  146 (758)
T 3ott_A           73 NTYLYMGTDNG-ILVYNYRADR--YEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNN  146 (758)
T ss_dssp             TTEEEEEETTE-EEEEETTTTE--ECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCS
T ss_pred             CCcEEEEeCCC-eEEEeCCCCE--EECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCC
Confidence            34555556555 6788875421  1111 112235776654 3554 4444454 577888876554321  0001 112


Q ss_pred             CceEEeeCCCCCeEEEecCCeEEEEecCCCcccccc-cC----CcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         92 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TE----HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~----h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                      ....+..+++|...+.+. +.+...+.++....... ..    ....|.++...+++..|-.|.. +.+..+|..+.+..
T Consensus       147 ~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~  224 (758)
T 3ott_A          147 TIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK  224 (758)
T ss_dssp             CEEEEEECTTCCEEEEET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE
T ss_pred             eEEEEEEcCCCCEEEEeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE
Confidence            233455677788777664 45666666554432211 11    1234788877776654333333 45777887655432


Q ss_pred             EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc--------CCCcceeEEEEecCCCeeEEEE
Q psy13076        167 LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS--------GQSKPINSCDFKPSRPFRIITG  238 (423)
Q Consensus       167 ~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~s~  238 (423)
                      ......  ...|.++...++|...+..  ..+  ...+...... ...+.        .....|.++....++.  +..|
T Consensus       225 ~~~~l~--~~~i~~i~~d~~g~lWigT--~~G--l~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWiG  295 (758)
T 3ott_A          225 QTEAFH--NNSIKSLALDGNGDLLAGT--DNG--LYVYHNDTTP-LQHIIHDSRNIQSLTNNIIWNIFADQEHN--IWLG  295 (758)
T ss_dssp             EEEEEE--EEEEEEEEECTTCCEEEEE--TTE--EEEECCTTSC-CEEECCCTTCTTSCSCSCEEEEEECTTCC--EEEE
T ss_pred             eccCCC--CCeEEEEEEcCCCCEEEEe--CCc--eeEEecCCCc-EEEEEcCCCCcCcCCcCeEEEEEEcCCCC--EEEE
Confidence            111111  2357788888777765543  222  1223332221 11111        1223466776665554  5556


Q ss_pred             eCCCeEEEEcCC-Cceeeeec----cccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc--ceeccc-----ccccC
Q psy13076        239 SEDNTIAVFEGP-PFKFKMTK----QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD--LVSELG-----NPAHK  306 (423)
Q Consensus       239 s~d~~i~~~~~~-~~~~~~~~----~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~--~~~~~~-----~~~~~  306 (423)
                      +..| +.++... .+......    ......|.++.-.++|.+-+ |+.+| +..++..+++  ....+.     .....
T Consensus       296 T~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~  372 (758)
T 3ott_A          296 TDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSH  372 (758)
T ss_dssp             ESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSC
T ss_pred             eCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCC
Confidence            6556 4444321 12111100    01224578888888887554 44454 6666655432  111111     01122


Q ss_pred             CCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee-Ccee--Eee-EEEEEe-cCcEEEEEeCCCcEEEEecCC-
Q psy13076        307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM-GNQV--EDQ-QVSCLW-QGDYLLTVSLSGFISYLDVNN-  380 (423)
Q Consensus       307 ~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~-~~~~--~~~-~~~~~~-~g~~l~~~~~~~~i~~~~~~~-  380 (423)
                      ..|.++.-+++|+..+. + ++-+..||.++++.. .+.. ....  ... ..+... ....|-.|+..+.+..++..+ 
T Consensus       373 ~~v~~i~~d~~g~lWig-t-~~GL~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~  449 (758)
T 3ott_A          373 NRIRHIYEDKEQQLWIA-T-DGSINRYDYATRQFI-HYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKL  449 (758)
T ss_dssp             SCEEEEEECTTSCEEEE-E-TTEEEEEETTTTEEE-EEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHH
T ss_pred             CceEEEEECCCCCEEEE-e-CCcHhhcCcCCCcEE-EeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccc
Confidence            45888888888876553 4 346888998776432 2221 1100  001 111222 234566677777788887542 


Q ss_pred             ---CCCceE---Ee---ccC-CCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        381 ---PSTPIR---VI---KGH-NKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       381 ---~~~~~~---~~---~~h-~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                         ......   ..   .+- ...|.++...+++++-+.++..+-+..+|.+
T Consensus       450 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~  501 (758)
T 3ott_A          450 MQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPR  501 (758)
T ss_dssp             HHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETT
T ss_pred             cccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCC
Confidence               001111   11   111 2358999988888876633333446666654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.60  E-value=19  Score=33.44  Aligned_cols=106  Identities=12%  Similarity=0.100  Sum_probs=57.5

Q ss_pred             ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce---eeee----cc-----ccccCeEEEEECCC----CCEEEEEEec-
Q psy13076        221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK---FKMT----KQ-----EHSRFVQAVRYSPS----GSHFASAGFD-  283 (423)
Q Consensus       221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~---~~~~----~~-----~~~~~i~~l~~s~~----g~~l~s~s~d-  283 (423)
                      ....++|.|++.-+++.+...|.|++++.....   ....    ..     ........++++|+    +.+.++-+.+ 
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            456788899886335556678999999632211   0000    11     11345678999996    4444443321 


Q ss_pred             -----------CeEEEEECCCc----------cceecccccccCCCeEEEEECCCCCeEEEEeC
Q psy13076        284 -----------GKVFLYDGASA----------DLVSELGNPAHKGGVYAVAWKPDGTQLLTASG  326 (423)
Q Consensus       284 -----------g~i~vwd~~~~----------~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~  326 (423)
                                 ..|.-|....+          +.+..+...........|+|.|||.+.++.+.
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence                       13444554321          12222221111223578999999987777654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=81.81  E-value=2.7  Score=37.31  Aligned_cols=107  Identities=9%  Similarity=0.113  Sum_probs=59.4

Q ss_pred             CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEE--CC-CCCeEEEE-eCCCcEEEEecCCcceeeeeeeCcee
Q psy13076        275 SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW--KP-DGTQLLTA-SGDKTCKLWDIETKSAVSEFLMGNQV  350 (423)
Q Consensus       275 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~--~~-~~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~~~~  350 (423)
                      ..++.++.||.|.-+|.++|+...++... ....+....-  .+ ++..++.. +.||.+..+|..++...-.+....-.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            36788999999999999999887776432 1122222110  01 22333333 57999999998877433222111000


Q ss_pred             EeeEEE----EEe-------cCcEEEEEeCCCcEEEEecCCCC
Q psy13076        351 EDQQVS----CLW-------QGDYLLTVSLSGFISYLDVNNPS  382 (423)
Q Consensus       351 ~~~~~~----~~~-------~g~~l~~~~~~~~i~~~~~~~~~  382 (423)
                      ....+.    ...       .+..+.+|+.+|.++-.|..+++
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence            000011    001       45666777778877777776643

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=80.50  E-value=28  Score=30.15  Aligned_cols=125  Identities=11%  Similarity=0.110  Sum_probs=66.0

Q ss_pred             EEECCCCCEEEEEE--ec--CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecCCcceee
Q psy13076        268 VRYSPSGSHFASAG--FD--GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIETKSAVS  342 (423)
Q Consensus       268 l~~s~~g~~l~s~s--~d--g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~i~  342 (423)
                      ..++|+|++|+-..  .+  ..|...++.. .....+..  +.  +  .+|+|+++.|.-.+. ...|..-++..+.. +
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~--~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~-~  180 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKN--HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSE-A  180 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEES--SC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEE-E
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeC--CC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCE-E
Confidence            36778899887765  23  3455555543 22333321  11  1  456778887775544 56777777765542 2


Q ss_pred             eeeeCceeEeeEEEEEecCcEEEEEeCC--CcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe
Q psy13076        343 EFLMGNQVEDQQVSCLWQGDYLLTVSLS--GFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG  410 (423)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~  410 (423)
                      .+..+ ...   ....|++.+|.-....  ..|..-++.....  ..+..  ..+  -.|+|++++|.-+
T Consensus       181 ~l~~~-~~~---~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--~~Lt~--~~~--~~~~~~g~~Iy~~  240 (302)
T 3s25_A          181 LFYDC-NCY---KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--VVLTE--ANI--EHYNVYGSLIFYQ  240 (302)
T ss_dssp             EEECS-CEE---EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--EECSC--SCE--EEEEEETTEEEEE
T ss_pred             EEeCC-Ccc---ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--EEEeC--CCc--ceEEECCCEEEEE
Confidence            22211 111   1234688888765543  3565655544332  23322  223  3367778777644

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=80.24  E-value=48  Score=32.67  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=57.2

Q ss_pred             CCCCEEEEEEecC--eEEEEECCCccceeccc----ccccCCCeEEEEECCC-CCeEEEEeC--C-----CcEEEEecCC
Q psy13076        272 PSGSHFASAGFDG--KVFLYDGASADLVSELG----NPAHKGGVYAVAWKPD-GTQLLTASG--D-----KTCKLWDIET  337 (423)
Q Consensus       272 ~~g~~l~s~s~dg--~i~vwd~~~~~~~~~~~----~~~~~~~i~~l~~~~~-~~~l~s~s~--d-----~~i~iwd~~~  337 (423)
                      .+++.++.|+.++  .+.+||..+..-. .+.    .+.....-.++.+..+ ++.++.|+.  +     ..+.+||+.+
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~  577 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFK-DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA  577 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEE-ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceE-EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence            4778888887655  6889998765421 111    0111111233555555 667777765  2     3588999887


Q ss_pred             cce-----eeeeee--CceeEeeEEEEEec-CcEEEEEeC--------CCcEEEEecCCC
Q psy13076        338 KSA-----VSEFLM--GNQVEDQQVSCLWQ-GDYLLTVSL--------SGFISYLDVNNP  381 (423)
Q Consensus       338 ~~~-----i~~~~~--~~~~~~~~~~~~~~-g~~l~~~~~--------~~~i~~~~~~~~  381 (423)
                      ...     -.....  ........ .+..+ +..++.|+.        ...+..||..+.
T Consensus       578 ~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          578 ENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             TCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             CccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            661     111111  01111111 22334 676777763        345888888753

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.16  E-value=8.5  Score=39.62  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=33.8

Q ss_pred             CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076        308 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       308 ~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            466777888889999999999999999999999887644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	423
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-43
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-14
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-36
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-34
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-13
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.004
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-33
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-33
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-24
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-31
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-23
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-21
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-18
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-22
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-17
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-21
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-20
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-18
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-19
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-18
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-17
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-17
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-15
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-15
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-15
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-13
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-14
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-10
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-14
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-10
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-05
d1xipa_	381	b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (	1e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.004
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-05
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.002

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  151 bits (382), Expect = 3e-43
 Identities = 147/304 (48%), Positives = 202/304 (66%), Gaps = 5/304 (1%)

Query: 79  EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAK 138
             +F +LPRT RG  +VLG  P G    Y NG SV    + +   ++IYTEHS    VAK
Sbjct: 6   TALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAK 65

Query: 139 YSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE 198
            SPSG+Y ASGD+ G VRIWDT    HILK       GP+KDI+W  +++R+  VGEGRE
Sbjct: 66  TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 125

Query: 199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK 258
           RFGHVF+ +TGTS G ++GQ++ +NS DFKPSRPFRII+GS+DNT+A+FEGPPFKFK T 
Sbjct: 126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 185

Query: 259 QEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA-----HKGGVYAVA 313
            EH++FV +VRY+P GS FAS G DG + LY+G          + +     H G V+ + 
Sbjct: 186 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 245

Query: 314 WKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFI 373
           W PDGT++ +AS DKT K+W++ T        +G ++EDQQ+  +W    L+++S +GFI
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305

Query: 374 SYLD 377
           ++++
Sbjct: 306 NFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.1 bits (172), Expect = 3e-14
 Identities = 38/322 (11%), Positives = 80/322 (24%), Gaps = 40/322 (12%)

Query: 16  GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
           GD +   + +   +   V +  T   +   H+   T    SP      +G   G +  W+
Sbjct: 29  GDKIQYCNGTSVYTV-PVGSL-TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86

Query: 76  AKTE-YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV 134
                +I  T      G    +  D + K             ++            +   
Sbjct: 87  TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 146

Query: 135 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG 194
                           ISG       + +    K +           +   +    +   
Sbjct: 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 206

Query: 195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF 254
            G +    ++    GT                                      G     
Sbjct: 207 TGGDGTIVLYNGVDGT------------------------------------KTGVFEDD 230

Query: 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 314
            +    HS  V  + +SP G+  ASA  D  + +++ A+  +   +     +     +  
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI-PVGTRIEDQQLGI 289

Query: 315 KPDGTQLLTASGDKTCKLWDIE 336
                 L++ S +      + E
Sbjct: 290 IWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 9e-06
 Identities = 12/115 (10%), Positives = 25/115 (21%), Gaps = 45/115 (39%)

Query: 306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLL 365
           +G    +   P G ++   +G  +     + +                            
Sbjct: 17  RGTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSL--------------------------- 48

Query: 366 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
                            T   +   H+   T    SP      +G   G +  W+
Sbjct: 49  -----------------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 8   QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNK-PITALALSPDRGTVFTGS 66
             ++    G  + + S    I   +V       + I    +     L +   +  + + S
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 300

Query: 67  HDGFITRWN 75
            +GFI   N
Sbjct: 301 ANGFINFVN 309

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  133 bits (334), Expect = 3e-36
 Identities = 50/320 (15%), Positives = 106/320 (33%), Gaps = 25/320 (7%)

Query: 34  NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP 93
                    + GH  P+T +   P    + + S D  I  W+ +T     TL        
Sbjct: 4   IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

Query: 94  IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG 153
            +            +   ++ + + +          H   V+     P+G +I S     
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 154 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 213
            +++W+      +     H     ++ +  + D   +       ++   V++  T     
Sbjct: 124 TIKMWEVQTGYCVKTFTGHR--EWVRMVRPNQDGTLIASCSN--DQTVRVWVVATKECKA 179

Query: 214 EISGQSKPINSCDFKPSRPFRII-------------------TGSEDNTIAVFEGPPFKF 254
           E+      +    + P   +  I                   +GS D TI +++      
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239

Query: 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 314
            MT   H  +V+ V +   G    S   D  + ++D  +   +  L   AH+  V ++ +
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL--NAHEHFVTSLDF 297

Query: 315 KPDGTQLLTASGDKTCKLWD 334
                 ++T S D+T K+W+
Sbjct: 298 HKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (160), Expect = 9e-13
 Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 4/174 (2%)

Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGV 309
           P    K     H   V  V + P  S   SA  D  + ++D  + D    L    H   V
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL--KGHTDSV 62

Query: 310 YAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSL 369
             +++   G  L + S D T KLWD +        + G+      VS +  GD++++ S 
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 370 SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
              I   +V      ++   GH + +  +  + D   + + S+D  +  W   T
Sbjct: 122 DKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 10/45 (22%), Positives = 17/45 (37%)

Query: 379 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
                    + GH  P+T +   P    + + S D  I  W+ +T
Sbjct: 4   IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET 48

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (323), Expect = 1e-34
 Identities = 93/320 (29%), Positives = 147/320 (45%), Gaps = 20/320 (6%)

Query: 79  EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTEHSCA 133
           + I    P TQR     L  DP      Y  G S  +R +++     P +       S  
Sbjct: 6   KEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSV 65

Query: 134 VNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHIL------KNEFHPIGGPIKDIAWSP 185
           V   K+SP     Y+ SGD SGKV +W     +         K+EF  + GPI DI+W  
Sbjct: 66  VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF 125

Query: 186 DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA 245
           + +R+ VVGEGR+ FG     ++G S+GE+SG S+ IN+C  K SRP R +T  +D ++ 
Sbjct: 126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185

Query: 246 VFEGPPFK---FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF--LYDGASADLVSEL 300
            ++GPPFK      T  +   FV+ V +SP    F       +        +   L    
Sbjct: 186 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 245

Query: 301 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF-LMGNQVEDQQVSCLW 359
            +     G        D  +  T   D T ++WD+ T   V ++ L   Q+ +QQV  + 
Sbjct: 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 305

Query: 360 QGD-YLLTVSLSGFISYLDV 378
            G+  ++++SL G +++ ++
Sbjct: 306 TGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.4 bits (165), Expect = 2e-13
 Identities = 34/331 (10%), Positives = 81/331 (24%), Gaps = 45/331 (13%)

Query: 16  GDYLLTVSL-SGFISYLDVNNPST-PIRVIKGHN-KPITALALSPDRG--TVFTGSHDGF 70
            + +      S F+  LD  +    P+    GH    +T +  SP +G   + +G   G 
Sbjct: 29  TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK 88

Query: 71  ITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEH 130
           +  W    +    ++    + +                                  +   
Sbjct: 89  VIVWGWTFDKESNSVEVNVKSE----------------------------------FQVL 114

Query: 131 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM 190
           +  ++   +   G  +                       E       I            
Sbjct: 115 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR 174

Query: 191 VVVGEGRERFGHVFMSETGTSVGEI-----SGQSKPINSCDFKPSRPFRIITGSEDNTIA 245
            +                  S  +          + +            + +  + +   
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234

Query: 246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH 305
              G   K+    QE  +             FA+ G D  + ++D  ++  V +      
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 306 KGGVYAVAWKPDGT-QLLTASGDKTCKLWDI 335
           + G   V     G  ++++ S D T   +++
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 4/67 (5%)

Query: 12  CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALS---PDRGTVFTGSHD 68
                    TV     I   DV   S  ++      + +    +       G + + S D
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 69  GFITRWN 75
           G +  + 
Sbjct: 318 GTLNFYE 324

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  126 bits (316), Expect = 2e-33
 Identities = 52/298 (17%), Positives = 90/298 (30%), Gaps = 6/298 (2%)

Query: 39  PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG 98
             R ++GH   I A+    D   + + S DG +  W++ T      +P            
Sbjct: 47  TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106

Query: 99  DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
                       N   I N++    +   +                       S      
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166

Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
              + E   +                  + R+ V G   +    ++    G      +G 
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC-DASAKLWDVREGMCRQTFTGH 225

Query: 219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRF--VQAVRYSPSGSH 276
              IN+  F P+      TGS+D T  +F+    +  MT    +    + +V +S SG  
Sbjct: 226 ESDINAICFFPNGNA-FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 277 FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
             +   D    ++D   AD    L    H   V  +    DG  + T S D   K+W+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  124 bits (312), Expect = 7e-33
 Identities = 57/292 (19%), Positives = 101/292 (34%), Gaps = 6/292 (2%)

Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
           H   +    +      + S    GK+ IWD+     +  +        +   A++P    
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGNY 111

Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG 249
           +   G       +   +  G                  +     +I+T S D T A+++ 
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171

Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGV 309
              +   T   H+  V ++  +P    F S   D    L+D              H+  +
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF--TGHESDI 229

Query: 310 YAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVED-QQVSCLWQGDYLLTVS 368
            A+ + P+G    T S D TC+L+D+     +  +   N +     VS    G  LL   
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 369 LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
                +  D         V+ GH+  ++ L ++ D   V TGS D F+  WN
Sbjct: 290 DDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.0 bits (245), Expect = 9e-24
 Identities = 42/278 (15%), Positives = 81/278 (29%), Gaps = 7/278 (2%)

Query: 16  GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
              L++ S  G +   D       +  I   +  +   A +P    V  G  D   + +N
Sbjct: 67  SRLLVSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125

Query: 76  AKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGN---SVIIRNIENPAISDIYTEHSC 132
            KT      + R   G    L       +      +   +  + +IE    +  +T H+ 
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185

Query: 133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV 192
            V     +P      SG      ++WD            H     I  I + P+      
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFAT 243

Query: 193 VGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF 252
             +          ++              I S  F  S    ++ G +D    V++    
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALKA 302

Query: 253 KFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYD 290
                   H   V  +  +  G   A+  +D  + +++
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 47/215 (21%)

Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGV 309
              + + T + H   + A+ +        SA  DGK+ ++D  + + V  +  P     V
Sbjct: 43  IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI--PLRSSWV 100

Query: 310 YAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFL------------------------ 345
              A+ P G  +     D  C +++++T+                               
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160

Query: 346 --------------------MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI 385
                                G+  +   +S        ++ +        DV       
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCR 219

Query: 386 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           +   GH   I A+   P+     TGS D     ++
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 384 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
             R ++GH   I A+    D   + + S DG +  W++ T
Sbjct: 47  TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT 86

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  120 bits (301), Expect = 4e-31
 Identities = 67/427 (15%), Positives = 136/427 (31%), Gaps = 86/427 (20%)

Query: 38  TPIRVIKGHNKPITALALSPDR---GTVFTGSHDGFITRWNAKTEYIFA-TLPRTQRGQP 93
            P      H+KPI    L  D            + +   +N          L ++     
Sbjct: 4   VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSL---- 59

Query: 94  IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG 153
                                              +H+  V   K+S  G Y+A+G  + 
Sbjct: 60  -----------------------------------DHTSVVCCVKFSNDGEYLATGC-NK 83

Query: 154 KVRIWDTVNKEHILKNEFHPIG----------------GPIKDIAWSPDNQRMVVVGEGR 197
             +++   +   + +                         I+ + +SPD + +     G 
Sbjct: 84  TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT---GA 140

Query: 198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT 257
           E             +  I    +             ++++GS D T+ +++    +  +T
Sbjct: 141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 200

Query: 258 KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP-----AHKGGVYAV 312
                           G + A+   D  V ++D  +  LV  L +       HK  VY+V
Sbjct: 201 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 260

Query: 313 AWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ-----------G 361
            +  DG  +++ S D++ KLW+++  +  S+    N    +      +            
Sbjct: 261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320

Query: 362 DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA------LSPDRGTVFTGSHDGF 415
           +Y+L+ S    + + D  +   P+ +++GH   + ++A      L P+     TGS D  
Sbjct: 321 EYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 379

Query: 416 ITRWNAK 422
              W  K
Sbjct: 380 ARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.3 bits (230), Expect = 2e-21
 Identities = 56/341 (16%), Positives = 107/341 (31%), Gaps = 47/341 (13%)

Query: 7   DQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS 66
           ++        D  L   LS   S  + +  +         +  I ++  SPD   + TG+
Sbjct: 82  NKTTQVYRVSDGSLVARLSDD-SAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140

Query: 67  HDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI 126
            D  I  W+ +   I   L   ++    +       K    +   +V I ++     S  
Sbjct: 141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 200

Query: 127 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG-----GPIKDI 181
            +       VA     G YIA+G +   VR+WD+     + + +            +  +
Sbjct: 201 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 260

Query: 182 AWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSED 241
            ++ D Q +V     R                        +   + + +           
Sbjct: 261 VFTRDGQSVVSGSLDRS-----------------------VKLWNLQNANNKSDS----- 292

Query: 242 NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG 301
                        ++T   H  FV +V  + +  +  S   D  V  +D  S + +  L 
Sbjct: 293 -----KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML- 346

Query: 302 NPAHKGGVYAVA------WKPDGTQLLTASGDKTCKLWDIE 336
              H+  V +VA        P+     T SGD   ++W  +
Sbjct: 347 -QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (161), Expect = 1e-12
 Identities = 42/270 (15%), Positives = 80/270 (29%), Gaps = 68/270 (25%)

Query: 221 PINSCDFKPSRPFRIITGSEDNTIAVFE-GPPFKFKMTKQ---EHSRFVQAVRYSPSGSH 276
           P    D         +    ++   ++    P +  +      +H+  V  V++S  G +
Sbjct: 17  PPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY 76

Query: 277 FASAGFDGKVFLYDGASADLVSEL----------------GNPAHKGGVYAVAWKPDGTQ 320
            A+ G +    +Y  +   LV+ L                 +P+    + +V + PDG  
Sbjct: 77  LAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135

Query: 321 LLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ-------------------- 360
           L T + D+  ++WDIE +  V       Q                               
Sbjct: 136 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 195

Query: 361 ---------------------GDYLLTVSLSGFISYLDVNNPS------TPIRVIKGHNK 393
                                G Y+   SL   +   D           +      GH  
Sbjct: 196 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD 255

Query: 394 PITALALSPDRGTVFTGSHDGFITRWNAKT 423
            + ++  + D  +V +GS D  +  WN + 
Sbjct: 256 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.8 bits (239), Expect = 6e-23
 Identities = 58/385 (15%), Positives = 112/385 (29%), Gaps = 64/385 (16%)

Query: 34  NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP 93
                  +V+KGH+  +    L      + +GS D  +  W+A T     TL        
Sbjct: 3   RGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-------- 53

Query: 94  IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG 153
                                               H+  V  ++   +     S D + 
Sbjct: 54  ----------------------------------VGHTGGVWSSQMRDNIIISGSTDRTL 79

Query: 154 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG 213
           KV   +T    H L      +              R   +       G       G    
Sbjct: 80  KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV-- 137

Query: 214 EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS 273
                     +         R+++G+ D  + V++        T Q H+  V        
Sbjct: 138 ---------AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFD 186

Query: 274 GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLW 333
           G H  S   D  + ++D  + + +       H+     +  K +   L++ + D T K+W
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHT--LTGHQSLTSGMELKDN--ILVSGNADSTVKIW 242

Query: 334 DIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNP----STPIRVIK 389
           DI+T   +      N+ +       +  ++++T S  G +   D+       +       
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302

Query: 390 GHNKPITALALSPDRGTVFTGSHDG 414
           G    +  +  S  +     GS +G
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (224), Expect = 7e-21
 Identities = 43/338 (12%), Positives = 112/338 (33%), Gaps = 25/338 (7%)

Query: 6   EDQQVSCL-WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFT 64
           +D  ++CL + G+ +++ S    +           +R + GH   + +  +  +     +
Sbjct: 16  DDHVITCLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 65  GSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS 124
                 +                      +      + +    +   ++ + +IE     
Sbjct: 75  TDRTLKVWNAETGECIHT----LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL 130

Query: 125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWS 184
            +   H  AV   +Y        + D    V++WD   +  +   + H      +  +  
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYD--FMVKVWDPETETCLHTLQGHTN----RVYSLQ 184

Query: 185 PDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI 244
            D   +V      +    V+  ETG  +  ++G     +  + K +    +++G+ D+T+
Sbjct: 185 FDGIHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI---LVSGNADSTV 239

Query: 245 AVFEGPPFKFKMTKQEHSRFV-QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL--- 300
            +++    +   T Q  ++          + +   ++  DG V L+D  + + +  L   
Sbjct: 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299

Query: 301 GNPAHKGGVYAVAWKPDGTQLLTASGDKT----CKLWD 334
            +    G V+ +            S + T      + D
Sbjct: 300 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 3e-18
 Identities = 45/298 (15%), Positives = 96/298 (32%), Gaps = 19/298 (6%)

Query: 126 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP 185
           +   H   V        G  I SG     +++W  V  + +     H   G +       
Sbjct: 11  VLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--GGVWSSQMRD 67

Query: 186 DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA 245
           +                        +   I       ++         R+++GS D T+ 
Sbjct: 68  NIIIS-------GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH 305
           V++    +       H   V+ V+Y        S  +D  V ++D  +   +  L    +
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTLQGHTN 178

Query: 306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLL 365
                  + + DG  +++ S D + ++WD+ET + +         +        + + L+
Sbjct: 179 ----RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL---TGHQSLTSGMELKDNILV 231

Query: 366 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           + +    +   D+        +   +        L  ++  V T S DG +  W+ KT
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 289

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 379 NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
                  +V+KGH+  +    L      + +GS D  +  W+A T
Sbjct: 3   RGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT 46

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.2 bits (232), Expect = 8e-22
 Identities = 48/349 (13%), Positives = 95/349 (27%), Gaps = 34/349 (9%)

Query: 16  GDYLLTVSLSGFISYLDV-NNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 74
              +     +  +   +   N    +  +K HN  +T +  +PD   + T   D     W
Sbjct: 19  RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78

Query: 75  NAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNS------VIIRNIENPAISDIYT 128
             K      TL   +  +          +        S         +  +      I  
Sbjct: 79  TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 138

Query: 129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE----------------HILKNEFH 172
                V    + P+   +A+G    K RI+    KE                  L  E  
Sbjct: 139 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 198

Query: 173 PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP 232
              G +  + +S +  R+  V         V +++    +   +  S+ +          
Sbjct: 199 SSCGWVHGVCFSANGSRVAWVSH----DSTVCLADADKKMAVATLASETLPLLAVTFITE 254

Query: 233 FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA 292
             ++    D    +F       K++        +        +       D K      A
Sbjct: 255 SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 314

Query: 293 SADLVSELGNPAHKGGVYAVAWKPDG----TQLLTASGDKTCKLWDIET 337
           +A       +  HK  V  ++    G    +Q  T   D    +WD+ +
Sbjct: 315 AAG---AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.7 bits (197), Expect = 3e-17
 Identities = 49/401 (12%), Positives = 102/401 (25%), Gaps = 69/401 (17%)

Query: 46  HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNF 105
             +PI+  A + DR  +    ++  +  +                               
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-------------------------- 39

Query: 106 LYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 165
                                  EH+  V    ++P    I +        +W    +  
Sbjct: 40  --------------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85

Query: 166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPIN-S 224
                   I    + + W+P+ ++  V    R      F  E    V +   +       
Sbjct: 86  KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145

Query: 225 CDFKPSRPFRIITGSEDNTIAVFEG------------------PPFKFKMTKQEHSRFVQ 266
                     +  GS D    +F                    P  +          +V 
Sbjct: 146 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH 205

Query: 267 AVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG 326
            V +S +GS  A    D  V L D      V+     +    + AV +  +   L+ A  
Sbjct: 206 GVCFSANGSRVAWVSHDSTVCLADADKKMAVAT--LASETLPLLAVTFITES-SLVAAGH 262

Query: 327 DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR 386
           D    L+  ++ +    F       D       +G        +         + +    
Sbjct: 263 DCFPVLFTYDSAAGKLSF---GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG 319

Query: 387 VIKGHNKPITALALSPDRGT----VFTGSHDGFITRWNAKT 423
           +   H   ++ +++            T   DG ++ W+ ++
Sbjct: 320 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 92.0 bits (226), Expect = 2e-21
 Identities = 54/297 (18%), Positives = 94/297 (31%), Gaps = 5/297 (1%)

Query: 40  IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGD 99
            +V  GHNK ITAL+ S D  T+F+   +G I  W+  T       P        + G  
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM--ITGIK 62

Query: 100 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 159
              K  L+T      ++ +  PA            N     P G  +++         + 
Sbjct: 63  TTSKGDLFTVSWDDHLKVV--PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 160 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQS 219
            +      K    PI      +A S D Q + V G+  +   +     + + V  I   +
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 220 KPINSCDFKPSRPFRIITGSEDNTIAVFE-GPPFKFKMTKQEHSRFVQAVRYSPSGSHFA 278
           +  +               S                  +   H+  V  V +SP     A
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 279 SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI 335
           +   D  V +++         +   AH           + T +++A  D   K W++
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.5 bits (126), Expect = 2e-08
 Identities = 11/56 (19%), Positives = 20/56 (35%)

Query: 305 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ 360
           H   + A++   DG  L +A  +     WDI T  +   F   +      +    +
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (114), Expect = 5e-07
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 385 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
            +V  GHNK ITAL+ S D  T+F+   +G I  W+  T
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 43

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.004
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 12  CLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGF 70
                  L T SL   +   ++N PS  PI +   H        +  +  T+ +   D  
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291

Query: 71  ITRWN 75
           I  WN
Sbjct: 292 IKFWN 296

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (220), Expect = 2e-20
 Identities = 39/295 (13%), Positives = 85/295 (28%), Gaps = 12/295 (4%)

Query: 45  GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ----RGQPIVLGGDP 100
            H + + A+ +S     V+TG   G +  W+       + + +                P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 101 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 160
            G   L   G +  +   +  A +        +   A Y+ +    +    S        
Sbjct: 108 DGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166

Query: 161 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK 220
           V   H         G           N    +   G +     +         +    + 
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQLQQHDFTS 225

Query: 221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASA 280
            I S  + P+  +  +    +++           K     H   V +++++  G  F S 
Sbjct: 226 QIFSLGYCPTGEWLAVG--MESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST 283

Query: 281 GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI 335
           G D  +  +       + +         V +     D   ++T SGDK   ++++
Sbjct: 284 GKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 7e-18
 Identities = 42/295 (14%), Positives = 92/295 (31%), Gaps = 12/295 (4%)

Query: 129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN---KEHILKNEFHPIGGPIKDIAWSP 185
            H   V     S    ++ +G   G V++WD  +   K  + + +       I+     P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 186 DNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA 245
           D   ++V GE          + T     E++  +    +    P         S+ N   
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA- 166

Query: 246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH 305
           V++          Q H+     +  S  G+   + G D  V  +D      + +      
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---F 223

Query: 306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLL 365
              ++++ + P G  L         ++  +         L  ++     +   + G + +
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP--DKYQLHLHESCVLSLKFAYCGKWFV 281

Query: 366 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 420
           +      ++          I      +  + +  +S D   + TGS D   T + 
Sbjct: 282 STGKDNLLNAWRTPY-GASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 13/116 (11%), Positives = 26/116 (22%), Gaps = 43/116 (37%)

Query: 46  HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNF 105
           H   + +L  +       +   D  +  W                G  I           
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------------GASIFQ--------- 302

Query: 106 LYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 161
                                 ++ S +V     S    YI +G    K  +++ +
Sbjct: 303 ----------------------SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.8 bits (210), Expect = 2e-19
 Identities = 46/297 (15%), Positives = 94/297 (31%), Gaps = 15/297 (5%)

Query: 39  PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG 98
            ++ I GHNK ITAL ++P    + +GS+DG I  W++ + +             IV   
Sbjct: 5   VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-------QDHSNLIVSLD 53

Query: 99  DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 158
           + K + +   + +  +  N           + + A N    +          +       
Sbjct: 54  NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 113

Query: 159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQ 218
               + +   +        +       +  ++  + +    F          S   IS  
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173

Query: 219 SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFA 278
              I + D         +   E  T            ++ +   +              A
Sbjct: 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE--EIEEDLVA 231

Query: 279 SAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI 335
           +   D  +F+Y       + +  N AHK GV  + W+   T L+++  D   K W++
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALN-AHKDGVNNLLWETPST-LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.4 bits (157), Expect = 1e-12
 Identities = 38/301 (12%), Positives = 75/301 (24%), Gaps = 37/301 (12%)

Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
           H+  +     +P    + SG   G++  W          +        I  +  S   + 
Sbjct: 12  HNKGITALTVNP----LISGSYDGRIMEWS-------SSSMHQDHSNLIVSLDNSKAQEY 60

Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG 249
             +  +   +   +   E G+     S  +    +                         
Sbjct: 61  SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI--------------- 105

Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGV 309
                    +           S S ++ A    +G        S   VS       +   
Sbjct: 106 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 165

Query: 310 YAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLL---- 365
             ++  P  T +          L+D++++   +        +   +S             
Sbjct: 166 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI 225

Query: 366 ------TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
                 T SL   I    V  P   I+ +  H   +  L       T+ +   D  I RW
Sbjct: 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRW 284

Query: 420 N 420
           N
Sbjct: 285 N 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 1   MGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG 60
                E        + D + T SL   I    V  P   I+ +  H   +  L       
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-S 270

Query: 61  TVFTGSHDGFITRWN 75
           T+ +   D  I RWN
Sbjct: 271 TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 4/40 (10%)

Query: 384 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
            ++ I GHNK ITAL ++P    + +GS+DG I  W++ +
Sbjct: 5   VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 40

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (204), Expect = 1e-18
 Identities = 52/304 (17%), Positives = 102/304 (33%), Gaps = 23/304 (7%)

Query: 38  TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLG 97
             I      +K +  L    D   + +G  D  I  W+  T        R   G    + 
Sbjct: 6   QRIHCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNT----LECKRILTGHTGSVL 59

Query: 98  GDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI 157
                +  + T  +   +R  +      + T       V     +   + +      + +
Sbjct: 60  CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119

Query: 158 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISG 217
           WD  +   I            +      D     +V    +R   V+ + T   V  ++G
Sbjct: 120 WDMASPTDITLRRVLVGH---RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 176

Query: 218 QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF 277
             + I    +   R   +++GS DNTI +++          + H   V+ +R+       
Sbjct: 177 HKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RI 231

Query: 278 ASAGFDGKVFLYDGASADLVSELGNP-------AHKGGVYAVAWKPDGTQLLTASGDKTC 330
            S  +DGK+ ++D  +A                 H G V+ + +  D  Q++++S D T 
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI 289

Query: 331 KLWD 334
            +WD
Sbjct: 290 LIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (180), Expect = 2e-15
 Identities = 43/301 (14%), Positives = 88/301 (29%), Gaps = 27/301 (8%)

Query: 128 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 187
           +E S  V           I SG     ++IWD    E       H               
Sbjct: 12  SETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH------TGSVLCLQY 63

Query: 188 QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF 247
              V++    +    V+   TG  +  +    + +    F                  + 
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKG 307
                  +     H   V  V +       AS   D  + +++ ++ + V  L       
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKR-- 179

Query: 308 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTV 367
                  +     +++ S D T +LWDIE  + +       ++        +    +++ 
Sbjct: 180 --GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC---IRFDNKRIVSG 234

Query: 368 SLSGFISYLDVNN--------PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
           +  G I   D+           +  +R +  H+  +  L     +  + + SHD  I  W
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 292

Query: 420 N 420
           +
Sbjct: 293 D 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 12/208 (5%)

Query: 216 SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS 275
           S  SK +    +   +   I++G  DNTI +++    + K     H+  V  ++Y     
Sbjct: 12  SETSKGVYCLQYDDQK---IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI 335
              S+    +V+  +        E+ N         +  + +   ++T S D++  +WD+
Sbjct: 69  ITGSSDSTVRVWDVN------TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 336 ETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPI 395
            + + ++   +            +   Y+++ S    I   + +     +R + GH + I
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGI 181

Query: 396 TALALSPDRGTVFTGSHDGFITRWNAKT 423
             L        V +GS D  I  W+ + 
Sbjct: 182 ACLQYRDRL--VVSGSSDNTIRLWDIEC 207

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 12/155 (7%)

Query: 12  CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI 71
             +   Y+++ S    I   + +     +R + GH + I  L        V +GS D  I
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYRDRL--VVSGSSDNTI 200

Query: 72  TRWNAKT-------EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS 124
             W+ +        E     +   +     ++ G   GK  ++    ++  R        
Sbjct: 201 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 159
               EHS  V   +     F I S      + IWD
Sbjct: 261 RTLVEHSGRVF--RLQFDEFQIVSSSHDDTILIWD 293

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.3 bits (196), Expect = 5e-17
 Identities = 60/424 (14%), Positives = 119/424 (28%), Gaps = 93/424 (21%)

Query: 38  TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLG 97
                 K H+  I +++         + S DG++  W+ K         ++        G
Sbjct: 5   ATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 98  GDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV-NVAKYSPSGFYIASGDISGKVR 156
                                           H   +  + + +     +A+   SG + 
Sbjct: 63  ------------------------------LHHVDVLQAIERDAFELCLVATTSFSGDLL 92

Query: 157 IWDTVNKEHILKNEFHPI--------GGPIKDIAWSPD-----NQRMVVVGE-------- 195
            +    ++   K  F  +              + W        + R+V            
Sbjct: 93  FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 152

Query: 196 --------GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV- 246
                              E   +V      S+   S D        I TG  + T+ + 
Sbjct: 153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQIS 210

Query: 247 -----FEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFL------------- 288
                     F+ + +   +S  +++V++SP GS  A A                     
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270

Query: 289 -YDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM- 346
                +    + LG  AH   V ++++   G  L +A  D   + WD++TK  ++   M 
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 347 GNQVEDQQVSCLW--QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDR 404
            + +E ++        GD L    +       DV       R   G +   +   +  DR
Sbjct: 331 CDDIEIEEDILAVDEHGDSLAEPGV------FDVKFLKKGWRSGMGADLNESLCCVCLDR 384

Query: 405 GTVF 408
              +
Sbjct: 385 SIRW 388

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 13/129 (10%), Positives = 34/129 (26%), Gaps = 15/129 (11%)

Query: 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCL----- 358
           AH   +++V+        ++ SGD   K+WD +     +           +         
Sbjct: 12  AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 359 -------WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS 411
                  ++   + T S SG + +  +       + +      +    +           
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITR-EDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 412 HDGFITRWN 420
                   +
Sbjct: 129 ASNDRLLSH 137

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 25/188 (13%)

Query: 37  STPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI-----------------TRWNAKTE 79
              +      ++  T++ +S   G + TG ++G +                       + 
Sbjct: 174 QGTVESPMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232

Query: 80  YIFATLPRTQRGQPIVLGGD-----PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV 134
            I +     Q     +                +      +     +   S     HS  V
Sbjct: 233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV 292

Query: 135 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH--PIGGPIKDIAWSPDNQRMVV 192
               ++ SG  + S    GK+R WD   KE I     H   I      +A       +  
Sbjct: 293 MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 352

Query: 193 VGEGRERF 200
            G    +F
Sbjct: 353 PGVFDVKF 360

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 383 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
                 K H+  I +++         + S DG++  W+ K 
Sbjct: 5   ATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKL 43

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.1 bits (193), Expect = 8e-17
 Identities = 39/325 (12%), Positives = 89/325 (27%), Gaps = 28/325 (8%)

Query: 40  IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGD 99
           +++ +     I+ + + P +  +   S DG +T +    +     L ++ R +  +L  +
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 100 --PKGKNFLYTNGNSVIIR--------NIENPAISDIYTEHSCAVNVAKYSPSGFYIASG 149
                   +Y       I         + +    ++                        
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 150 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETG 209
                 R +          N  +           +  ++ +V +   + ++  + + E  
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 210 TSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAV---------------FEGPPFKF 254
               E SG    I      P         S D  +AV               F     + 
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW 314
            +     +  V ++ +SP      +AG DG +  ++  +   +      A       V  
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF---AKFNEDSVVKI 300

Query: 315 KPDGTQLLTASGDKTCKLWDIETKS 339
                 L  A+ D T K      ++
Sbjct: 301 ACSDNILCLATSDDTFKTNAAIDQT 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.0 bits (177), Expect = 8e-15
 Identities = 27/315 (8%), Positives = 77/315 (24%), Gaps = 26/315 (8%)

Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDT-VNKEHILKNEFHPIGGPIKDIAWSPDNQ 188
               ++  K  PS   +      G + ++   +  +++   +      P+    +  +  
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 189 RMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE 248
             + VG   +            S   ++     +  C        ++I  S D  I V +
Sbjct: 70  LQIYVG-TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128

Query: 249 GPPFKFKMTKQEHSRFVQAVRYSPS------GSHFASAGFDGKVFLYDGASADLVSELGN 302
              +   +   ++         +         S       + +V  +     +  +    
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188

Query: 303 --PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQ------ 354
                           +      +S D    +   + +               +      
Sbjct: 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248

Query: 355 --------VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT 406
                   +    +  +L T    G IS  ++      I+     N   + + ++     
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT-RKKIKNFAKFN-EDSVVKIACSDNI 306

Query: 407 VFTGSHDGFITRWNA 421
           +   + D       A
Sbjct: 307 LCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 6e-10
 Identities = 10/80 (12%), Positives = 29/80 (36%)

Query: 304 AHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY 363
           A K  +  +   P  + LL  S D +  ++  + ++   + L   + +   + C +  + 
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 364 LLTVSLSGFISYLDVNNPST 383
            L + +      +   +   
Sbjct: 69  DLQIYVGTVQGEILKVDLIG 88

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 6/39 (15%), Positives = 17/39 (43%)

Query: 385 IRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           +++ +     I+ + + P +  +   S DG +T +    
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI 42

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 77.1 bits (188), Expect = 3e-16
 Identities = 32/345 (9%), Positives = 76/345 (22%), Gaps = 33/345 (9%)

Query: 16  GDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTVF-TGSHDGFITR 73
            +Y++  +    +  +DV +  T  +              ++PD  T +   +H G I  
Sbjct: 8   HEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 74  WNAKTEYIFATLPRTQ-----RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY- 127
            +  T         +                P GK    T   +  + +        +  
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126

Query: 128 ----TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 183
                            P   Y+      G + +      +  +                
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDV---------------K 171

Query: 184 SPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT 243
           +      + +     +                  +   + +            T      
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231

Query: 244 IAVFEGPPFKFKM-TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN 302
               +    K       + +        SP   +        ++  YD     L+     
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN- 289

Query: 303 PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG 347
                  Y VA+   G +L          +++ +T   V    + 
Sbjct: 290 --LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 12/116 (10%), Positives = 33/116 (28%), Gaps = 6/116 (5%)

Query: 312 VAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLL-TVSLS 370
            A K     ++  +      + D+ + +     +M ++                   +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 371 GFISYLDVNNPSTPIRVIKG-----HNKPITALALSPDRGTVFTGSHDGFITRWNA 421
           G I  +D++                  + + + A+SPD   V+   +       + 
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 117

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 73.7 bits (179), Expect = 4e-15
 Identities = 27/314 (8%), Positives = 69/314 (21%), Gaps = 25/314 (7%)

Query: 45  GHNKPITALALSPDRGTVFTGSHDG--FITRWNAKTEYIFATLPRTQRGQPIVLGGDPKG 102
                I  +    D    F        F+  ++ +T               + +  + K 
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99

Query: 103 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG------DISGKVR 156
                     + +            +  +   +      S F                ++
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR-----ERFGHVFMSETGTS 211
                + E                 A+  D++ +  +         +R    F  E  + 
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219

Query: 212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP------PFKFKMTKQEHSRFV 265
              I       N     P          + N +     P       ++  +  +      
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279

Query: 266 QAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325
               +    +++  A   G +  YD  +  +         K  +  +    D   ++   
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT------EVKNNLTDLRLSADRKTVMVRK 333

Query: 326 GDKTCKLWDIETKS 339
            D     + +E   
Sbjct: 334 DDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 69.9 bits (169), Expect = 9e-14
 Identities = 32/338 (9%), Positives = 67/338 (19%), Gaps = 23/338 (6%)

Query: 102 GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA--SGDISGKVRIWD 159
           G    + +     I+++    +  +       +   +                  + I+D
Sbjct: 15  GDLIAFVSRGQAFIQDVSGTYV--LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD 72

Query: 160 TVNKEHILKNEFHPI---GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS 216
               +     E        G  ++  ++        +       G   + E         
Sbjct: 73  YRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 132

Query: 217 GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSH 276
                 +             T               +        +    A  +     +
Sbjct: 133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN 192

Query: 277 FASAGFDGKVFLYDGASADLVSELGN-----PAHKGGVYAVAWKPDGTQLLTASGDKTCK 331
                +       D    +   E+ +     P   G        P          D    
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252

Query: 332 LWDIETKSAVSEFLMGNQVEDQQVSCLWQ------GDYLLTVSLSGFISYLDVNNPSTPI 385
                  +            +  +             Y       G +   DV       
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----- 307

Query: 386 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           R +      +T L LS DR TV     DG I  +  + 
Sbjct: 308 RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 19/304 (6%), Positives = 50/304 (16%), Gaps = 24/304 (7%)

Query: 16  GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN 75
                             +  +      + +   + A+ +  +       +    I   +
Sbjct: 54  TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 113

Query: 76  AKTEYIFATL---------PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI 126
            +T                         +  G P             I            
Sbjct: 114 LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA 173

Query: 127 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG-----GPIKDI 181
            T  +       +      +            D V      +    P       G     
Sbjct: 174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT 233

Query: 182 AWSPDNQRMVVV-----GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII 236
              P +              +              +  +       +             
Sbjct: 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA-AYYQ 292

Query: 237 TGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADL 296
              E   +  ++           E    +  +R S           DGK++ +     + 
Sbjct: 293 GAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348

Query: 297 VSEL 300
              +
Sbjct: 349 ERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 15/100 (15%), Positives = 25/100 (25%), Gaps = 8/100 (8%)

Query: 267 AVRYSPS-GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS 325
           A  +SP  G   A     G+ F+ D +   ++           +  V    D        
Sbjct: 7   AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV----PEPLRIRYVRRGGDTKVAFIHG 61

Query: 326 GD--KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY 363
                   ++D  T  A         V    V    +   
Sbjct: 62  TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAV 101

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 72.9 bits (177), Expect = 8e-15
 Identities = 32/347 (9%), Positives = 77/347 (22%), Gaps = 50/347 (14%)

Query: 17  DYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP--ITALALSPDRGTVF-TGSHDGFITR 73
           DY+L  +    +  +D        +VI   +         ++P     + T +    + +
Sbjct: 2   DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 74  WNAKTEYIFATL----PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI--- 126
            +  T      +    P  +          P GK          +         + +   
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 127 ---------YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGP 177
                      E    + +  ++  G  +        V   +             PI   
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVE-----DKPIQSW 175

Query: 178 IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIIT 237
             +    PD   +    E        F +                               
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYT---------------------ARKDIDPADP 214

Query: 238 GSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV 297
            +    +   +    +  M +            + + +   + G    +  +D      +
Sbjct: 215 TAYRTGLLTMDLETGEMAMREVRIMDVFY-FSTAVNPAKTRAFGAYNVLESFDLEKNASI 273

Query: 298 SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF 344
             +         Y+V    DG+ +           +D ET     + 
Sbjct: 274 KRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 68.3 bits (165), Expect = 2e-13
 Identities = 35/329 (10%), Positives = 91/329 (27%), Gaps = 27/329 (8%)

Query: 103 KNFLYTNG--NSVIIRNIENPAISDIYT--EHSCAVNVAKYSPSGFYI-ASGDISGKVRI 157
           ++++      + +++ + E  A+  + T  +      V   +P G    A+ + S  +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 158 WDTVNKEHILKNEFHP---IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGE 214
            D V  E + + +          +   A SPD + + +           F  +       
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 274
            +       + +    R   ++  + D +     G        +       + ++   + 
Sbjct: 121 DAETLSRRKAFEAP--RQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE 178

Query: 275 SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
           ++                           +          + D       +        D
Sbjct: 179 TYAQPDVLAVWNQ-------------HESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225

Query: 335 IETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP 394
           +ET       +    V     +                +   D+   ++  RV       
Sbjct: 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRA--FGAYNVLESFDLEKNASIKRV--PLPHS 281

Query: 395 ITALALSPDRGTVFTGSHDGFITRWNAKT 423
             ++ +S D  TV+ G   G +  ++A+T
Sbjct: 282 YYSVNVSTDGSTVWLGGALGDLAAYDAET 310

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 47/396 (11%), Positives = 94/396 (23%), Gaps = 83/396 (20%)

Query: 47  NKPITALALSPDRGTVF-----TGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPK 101
           ++P    A +PD   V+       +        + +   +   +       P+V      
Sbjct: 1   DEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVV---ADD 57

Query: 102 GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 161
           G  F+                                       IA G+ +  V ++D V
Sbjct: 58  GS-FIAHAST------------------------------VFSRIARGERTDYVEVFDPV 86

Query: 162 NKEHILKNEFH-----PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS 216
                   E        +G      + +PD + ++           V   E       + 
Sbjct: 87  TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 146

Query: 217 GQSKPINSCD-------FKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVR 269
                                     +    + T  +     F       E    +    
Sbjct: 147 VPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF-----HPEDEFLINHPA 201

Query: 270 YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT 329
           YS          + GK+   D +S D        A      A  W+P G Q +       
Sbjct: 202 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 261

Query: 330 CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK 389
                                       + Q D     + S F+  LD       +   +
Sbjct: 262 RIYLL-----------------------VDQRDEWRHKTASRFVVVLDAKTG-ERLAKFE 297

Query: 390 GHNKPITALALSPDRGTVF--TGSHDGFITRWNAKT 423
             ++   ++ +S D   +     + D  +   +A++
Sbjct: 298 MGHEI-DSINVSQDEKPLLYALSTGDKTLYIHDAES 332

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 39/344 (11%), Positives = 89/344 (25%), Gaps = 51/344 (14%)

Query: 23  SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFT----------GSHDGFIT 72
           +       +D       I +I G   P     ++ D   +            G    ++ 
Sbjct: 25  AAVTQQFVIDGEA-GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE 81

Query: 73  RWNAKTEYIFATLPRTQR------GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI 126
            ++  T    A +             P +    P GK  L+   +      + +      
Sbjct: 82  VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141

Query: 127 --YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG--GPIKDIA 182
               +     ++   +P  F++   D S     + T     I   E         I   A
Sbjct: 142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA 201

Query: 183 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDN 242
           +S    R+V      +       S     +  +   ++   +  ++P    + +      
Sbjct: 202 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW-QQVAYHRAL 260

Query: 243 TIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN 302
                                             +        V + D  + + +++   
Sbjct: 261 DRIYL----------------------LVDQRDEWRHKTASRFVVVLDAKTGERLAKF-- 296

Query: 303 PAHKGGVYAVAWKPDGTQLL--TASGDKTCKLWDIETKSAVSEF 344
                 + ++    D   LL   ++GDKT  + D E+   +   
Sbjct: 297 -EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 339

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 20/176 (11%), Positives = 43/176 (24%), Gaps = 23/176 (13%)

Query: 45  GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKN 104
                I   A S   G +   ++ G I + +  +             +     G   G  
Sbjct: 192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 251

Query: 105 FLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 164
                                    H     +               S  V + D    E
Sbjct: 252 QQVAY--------------------HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 291

Query: 165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK 220
            +       +G  I  I  S D + ++      ++  ++  +E+G  +  ++    
Sbjct: 292 RL---AKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 344

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 32/292 (10%), Positives = 77/292 (26%), Gaps = 33/292 (11%)

Query: 14  WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITA-------LALSPDRGTVFTGS 66
                +     + ++   D      P   I+  + P           +L+PD  T+    
Sbjct: 66  TVFSRIARGERTDYVEVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124

Query: 67  HDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI 126
                       E               +    P        +G+   +           
Sbjct: 125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 184

Query: 127 YTEHSCAVN---------------VAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 171
           +TE     +               +   + +G        SG  +    V      +   
Sbjct: 185 HTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD 244

Query: 172 HPIGGPIKDIAWSPDNQRMVVVGEGRERFGH--------VFMSETGTSVGEISGQSKPIN 223
               G  + +A+     R+ ++ + R+ + H        V  ++TG  + +       I+
Sbjct: 245 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEID 303

Query: 224 SCDFKP-SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 274
           S +     +P      + D T+ + +    +   +  +     Q +  +  G
Sbjct: 304 SINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 70.6 bits (172), Expect = 7e-14
 Identities = 43/348 (12%), Positives = 97/348 (27%), Gaps = 38/348 (10%)

Query: 18  YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAK 77
           + +T+  +G I+ +D +       V+           LS     +F    DG +   +  
Sbjct: 34  FSVTLRDAGQIALIDGST-YEIKTVLDTGYAV-HISRLSASGRYLFVIGRDGKVNMIDLW 91

Query: 78  TE--YIFATLPRTQRGQPIV--LGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHS 131
            +     A +      + I        + K  +         +I + E      I +   
Sbjct: 92  MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151

Query: 132 CAVNVAKYSPSGFYIA------------SGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 179
              +  +Y P     A            +   +GK+ + D  +  + LK         + 
Sbjct: 152 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-LKTTEISAERFLH 210

Query: 180 DIAWSPDNQRMVVVGEGRERFGH----VFMSETGTSVGEISGQSKPINSCDFKPSRPFRI 235
           D      ++  +     R +                 G  +       +       P   
Sbjct: 211 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 270

Query: 236 ITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD 295
            +   D+++A+    P        +++  +     +  G            +LY  A+ +
Sbjct: 271 TSHMGDDSVALIGTDPEGHP----DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 326

Query: 296 LVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE 343
             +E+          +VA   D   +     D   K   I   + ++E
Sbjct: 327 PEAEISG--------SVAV-FDIKAMTGDGSDPEFKTLPIAEWAGITE 365

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.8 bits (131), Expect = 9e-09
 Identities = 28/204 (13%), Positives = 56/204 (27%), Gaps = 16/204 (7%)

Query: 235 IITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASA 294
            +T  +   IA+ +G  ++ K         V   R S SG +    G DGKV + D    
Sbjct: 35  SVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMK 93

Query: 295 DLVSELGNPA---HKGGVYAVAWKPDGTQLL-TASGDKTCKLWDIETKSAVSEFLMGN-- 348
           +  +          +    +     +    +  A       + D ET             
Sbjct: 94  EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153

Query: 349 ------QVEDQQVSCLWQGD---YLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA 399
                   E +  + L       +++ V  +G I  +D  + +          + +    
Sbjct: 154 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG 213

Query: 400 LSPDRGTVFTGSHDGFITRWNAKT 423
           L        T ++           
Sbjct: 214 LDGSHRYFITAANARNKLVVIDTK 237

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 38/299 (12%), Positives = 72/299 (24%), Gaps = 53/299 (17%)

Query: 133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV 192
           AV++++ S SG Y+      GKV + D   KE     E   IG   + I  S        
Sbjct: 63  AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI-KIGSEARSIETSK------- 114

Query: 193 VGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF 252
                                                   + I          + +G   
Sbjct: 115 ---------------------------------MEGWEDKYAIAGAYWPPQYVIMDGETL 141

Query: 253 KFKMTKQEHSRFVQAVRYSPSGSHFA-SAGFDGKVFLYDGASADLVSELG---------- 301
           + K  +           Y P     A  A      F+ +      +  +           
Sbjct: 142 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT 201

Query: 302 NPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ 360
             + +  ++           +TA+       + D +    V+    G Q         + 
Sbjct: 202 EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV 261

Query: 361 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRW 419
                 V  +  +    V    T       +   I     +   G++F  +H      +
Sbjct: 262 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 5e-11
 Identities = 52/362 (14%), Positives = 113/362 (31%), Gaps = 35/362 (9%)

Query: 6   EDQQVSCL-WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFT 64
               ++CL ++ +Y++T +    I   D  N    +  + GH+  + AL  +   G + +
Sbjct: 12  MTSVITCLQFEDNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHG-GILVS 69

Query: 65  GSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS 124
           GS D  +  W+ K                 +   + K   ++ T      +       + 
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH------VW 123

Query: 125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWS 184
            +  E S    V  +     Y        +   +  V + H+         G I      
Sbjct: 124 KLPKESS----VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179

Query: 185 PDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI 244
            +   +  V + +  +                                 R I+ S D TI
Sbjct: 180 DNTLIVWDVAQMKCLYILSGH--------------TDRIYSTIYDHERKRCISASMDTTI 225

Query: 245 AVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA 304
            +++    +   T Q H+  V  +R S      A+A    + +  +  S           
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK------FSY 279

Query: 305 HKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL 364
           H   + A+        +L +  +    ++++ +   V   ++ +   DQ  S  ++G  L
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDA--DQIWSVNFKGKTL 337

Query: 365 LT 366
           + 
Sbjct: 338 VA 339

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 6e-09
 Identities = 37/307 (12%), Positives = 86/307 (28%), Gaps = 18/307 (5%)

Query: 130 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 189
           H  +V          Y+ +G     +R++D++NK+ +L+   H   G +  + ++     
Sbjct: 11  HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGGI- 66

Query: 190 MVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG 249
            +V G          + +   +       S        +      I+TGS DNT+ V++ 
Sbjct: 67  -LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGV 309
           P         E   +           +F          +   +    +   G+  +   V
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 310 YAVAWKPDGTQLLTASGDK------------TCKLWDIETKSAVSEFLMGNQVEDQQVSC 357
           + VA       L   +                    D   +    E            + 
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 358 LWQGDYLLTVSLSGF-ISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFI 416
           +          +S      +   + +   R    H+  ++A+        +     +   
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 305

Query: 417 TRWNAKT 423
             +N ++
Sbjct: 306 NIYNLRS 312

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 3/152 (1%)

Query: 215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSG 274
           + G    + +C  +      +ITG++D  I V++    KF +    H   V A++Y+  G
Sbjct: 8   LRGHMTSVITC-LQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-G 64

Query: 275 SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD 334
               S   D  V ++D                     +    +   ++T S D T  +W 
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 335 IETKSAVSEFLMGNQVEDQQVSCLWQGDYLLT 366
           +  +S+V +    +       +      ++  
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 1/65 (1%)

Query: 10  VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG 69
           ++  +  D +L        +  ++ +       I      I ++        V     DG
Sbjct: 287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDG 345

Query: 70  FITRW 74
                
Sbjct: 346 QSFLE 350

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.4 bits (145), Expect = 1e-10
 Identities = 24/331 (7%), Positives = 71/331 (21%), Gaps = 50/331 (15%)

Query: 38  TPIRVIKGHNKPITALALSPDRGT----------VFTGSHDGFITRWNAKTEYIFATLP- 86
             +    G                             G    ++  ++  T    A +  
Sbjct: 57  VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114

Query: 87  -----RTQRGQPIVLGGDPKGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKY 139
                 +   +  ++G        L+     ++    ++   +   +    SC   +   
Sbjct: 115 PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH-IHPG 173

Query: 140 SPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER 199
           + +  Y+ S   S              +              A   +   M+V       
Sbjct: 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSI 233

Query: 200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ 259
                 +   T    I G      + +F+ +   +++   ++    +             
Sbjct: 234 LQGDIPAAGATMKAAIDGNESGRKADNFRSAGF-QMVAKLKNTDGIMI------------ 280

Query: 260 EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT 319
                             +             +       +    +     A+    DG 
Sbjct: 281 -----------LTVEHSRSCLAAAENTSSVTASVGQTSGPIS---NGHDSDAIIAAQDGA 326

Query: 320 QLL--TASGDKTCKLWDIETKSAVSEFLMGN 348
                 ++G +   ++D  +    S   +  
Sbjct: 327 SDNYANSAGTEVLDIYDAASDQDQSSVELDK 357

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 12/191 (6%), Positives = 33/191 (17%), Gaps = 18/191 (9%)

Query: 46  HNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP----IVLGGDPK 101
                T    S       +              +   A    +Q  Q     +++     
Sbjct: 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVAS 231

Query: 102 GKNFLYTNGNSVIIRNIENPAISDIYTE--HSCAVNVAKYSPSGFYI---------ASGD 150
                        ++   +   S    +   S    +     +   I         +   
Sbjct: 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA 291

Query: 151 ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT 210
            +           +          G     I  + D                ++ + +  
Sbjct: 292 AAENTSSVTASVGQTSGPI---SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348

Query: 211 SVGEISGQSKP 221
               +     P
Sbjct: 349 DQSSVELDKGP 359

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 51.4 bits (121), Expect = 8e-08
 Identities = 41/282 (14%), Positives = 92/282 (32%), Gaps = 8/282 (2%)

Query: 21  TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TGSHDGFITRWNAKTE 79
             S S  IS +DV +       I   + P     +SPD   V+   +H   ++  +  T 
Sbjct: 7   ANSESDNISVIDVTSN-KVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 80  YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKY 139
            + AT+P     Q + +  D K         +++ + +  +  ++         + +A  
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124

Query: 140 SPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER 199
                   + +    V + +TV K  I            K IA +PD  ++ V       
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG---RSPKGIAVTPDGTKVYVANFDSMS 181

Query: 200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ 259
              +               +    + + + ++ +        NT+++ +    K      
Sbjct: 182 ISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP 241

Query: 260 EHSRFVQAVRYSPSGSH-FASAGFDGKVFLYDGASADLVSEL 300
                   +  +P G   + +  F   V + D A+  + + +
Sbjct: 242 VGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 50.3 bits (118), Expect = 2e-07
 Identities = 36/281 (12%), Positives = 81/281 (28%), Gaps = 12/281 (4%)

Query: 145 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF 204
           YIA+ + S  + + D  + +        P+G        SPD  ++ V          V 
Sbjct: 5   YIANSE-SDNISVIDVTSNKVTAT---IPVGSNPMGAVISPDGTKVYVANAHS---NDVS 57

Query: 205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRF 264
           + +T T+    +  +              ++   +  ++                +  + 
Sbjct: 58  IIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS 117

Query: 265 VQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA 324
              +  SP G          K            + +   +       +A  PDGT++  A
Sbjct: 118 PLGLALSPDGKKLYVTNNGDKTVSVINTVTK--AVINTVSVGRSPKGIAVTPDGTKVYVA 175

Query: 325 SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPS-T 383
           + D           ++V + +                   +T     F +   ++  +  
Sbjct: 176 NFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235

Query: 384 PIRVIKGHNKPITALALSPDRGTVF-TGSHDGFITRWNAKT 423
               I     P   +A++PD   V+   S    ++  +  T
Sbjct: 236 ITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTAT 275

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 34/287 (11%), Positives = 80/287 (27%), Gaps = 7/287 (2%)

Query: 64  TGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI 123
             S    I+  +  +  + AT+P        V+   P G      N +S  +  I + A 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVI--SPDGTKVYVANAHSNDVSII-DTAT 63

Query: 124 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 183
           +++        +    + S         +        ++            G     +A 
Sbjct: 64  NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123

Query: 184 SPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT 243
           SPD +++ V   G +    +             G+S    +     ++ +     S   +
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183

Query: 244 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP 303
           +           +  +     +                +   V + D  +  + + +   
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--- 240

Query: 304 AHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDIETKSAVSEFLMGNQ 349
                   +A  PDG ++    S   T  + D  T +  +   +G  
Sbjct: 241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN 287

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 381

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 21/160 (13%), Positives = 41/160 (25%), Gaps = 5/160 (3%)

Query: 239 SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF-ASAGFDGKVFLYDGASADLV 297
           S  N +   +        T     + V  ++   +      S      + L   ++  L 
Sbjct: 102 STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLA 161

Query: 298 SELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSC 357
             + +        AV  K    Q       +  K ++    S + E       E   +S 
Sbjct: 162 QNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELP---VEEYSPLSV 218

Query: 358 LWQGDYLLTVSLSGFISYLDVNNP-STPIRVIKGHNKPIT 396
                          IS  D        + +IK  +   +
Sbjct: 219 TILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSAS 258

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 33/293 (11%), Positives = 85/293 (29%), Gaps = 28/293 (9%)

Query: 31  LDVNNPSTPIRVIKGHNKPITALALSPDRGTVF-TGSHDGFITRWNAKTEYIFATLPRTQ 89
           L+     T  +V+    +    + +SPD+  ++     +  +  +    +    T     
Sbjct: 21  LNHEGALTLTQVVDVPGQV-QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 79

Query: 90  R--GQPIVLGGDPKGKNFLYTNGN-----SVIIRNIENPAISDIYTEHSCAVNVAKYSPS 142
              G    +  D +G+     + N        + +     + D+        +      +
Sbjct: 80  ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN 139

Query: 143 GFYIASGDISGKVRIWDTVNKEHILKNEFHPI----GGPIKDIAWSPDNQRMV------- 191
                      ++ ++   +  H++  +   +    G   + + + P+ Q          
Sbjct: 140 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS 199

Query: 192 --VVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG 249
              V E ++  G++   +T   + E    ++        P            + I VF  
Sbjct: 200 SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV 259

Query: 250 PPFKFKMTKQEHS---RFVQAVRYSPSGSHFASAGFDG---KVFLYDGASADL 296
                 ++K+         +      SG +  +AG       V+   G    L
Sbjct: 260 SEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 7/77 (9%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 277 FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTA-SGDKTCKLWDI 335
           + ++    ++ +++      ++        G V  +   PD   L      +     + I
Sbjct: 7   YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66

Query: 336 ETKSAVSEFLMGNQVED 352
                   F   + +  
Sbjct: 67  APDDGALTFAAESALPG 83

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.6 bits (99), Expect = 6e-05
 Identities = 37/344 (10%), Positives = 89/344 (25%), Gaps = 36/344 (10%)

Query: 93  PIVLGGDPKGKNFLY---TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG 149
           P     D    N       +   + + + ++  I  +      AV++++ S SG Y+   
Sbjct: 21  PKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVI 79

Query: 150 DISGKVRIWDTVNKEHILKNEFHPIGGP---IKDIAWSPDNQRMVVVGEGRERFGHVFMS 206
               ++ + D   KE     E                  +++  +       +F  +   
Sbjct: 80  GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG- 138

Query: 207 ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQ 266
           ET      +S +   +++  + P      I  S ++   +         +          
Sbjct: 139 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 198

Query: 267 AVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG 326
            V    +    A  G+D     +  A+ +        +    + A               
Sbjct: 199 TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA--------------- 243

Query: 327 DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR 386
                +         + F+          S L  G    ++SL G             + 
Sbjct: 244 --LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDG----SISLIGTDPKNHPQYAWKKVA 297

Query: 387 VIKGHNKPITALALSPDRGTVF-------TGSHDGFITRWNAKT 423
            ++G       +   P    ++              +  ++ K 
Sbjct: 298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 341

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 40/298 (13%), Positives = 81/298 (27%), Gaps = 44/298 (14%)

Query: 147 ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFG----H 202
            SG   G+VR+   V     L     P+        W   N+   ++G  ++       H
Sbjct: 15  WSGGHQGEVRVLG-VPSMRELMR--IPVFNVDSATGWGITNESKEILGGDQQYLNGDCHH 71

Query: 203 VFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-KMTKQEH 261
             +S T                 D +    +  I    +  +A       K  K+T   +
Sbjct: 72  PHISMT-----------------DGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPN 114

Query: 262 SRFVQAVRYSP---------SGSHFASAGFDGKVFLYDGA-------SADLVSELGNPAH 305
            + +  +R            +         DG  F  D +        A+ +        
Sbjct: 115 VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV 174

Query: 306 KGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLL 365
            G +        G    +   +    +    T     ++++   VE +  + +  G++  
Sbjct: 175 DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE-RIAAAVKAGNF-K 232

Query: 366 TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT 423
           T+  S     +D    S   R I     P         +  +  G     ++      
Sbjct: 233 TIGDSKVPV-VDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	423
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.73
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.62
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.5
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.37
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.25
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.18
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.15
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.08
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.04
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.03
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.0
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.9
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.88
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.87
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.83
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.76
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.63
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.45
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.35
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.74
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.62
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.43
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.37
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.34
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.24
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.7
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.68
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.65
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.58
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.41
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.02
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.38
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.35
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.28
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.01
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.92
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.88
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.8
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.25
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.67
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	88.76
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.15
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.84
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	81.7
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	80.74

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-44  Score=325.77  Aligned_cols=300  Identities=50%  Similarity=0.926  Sum_probs=268.8

Q ss_pred             cceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEE
Q psy13076         79 EYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW  158 (423)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vw  158 (423)
                      ..++..++...++.+.+++.+|+|+.+++..++.+.+|+++++...+.+.+|...|++++|+|+|++||+|+.|++|++|
T Consensus         6 ~~~~~~~p~~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iw   85 (311)
T d1nr0a1           6 TALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW   85 (311)
T ss_dssp             EEEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccccCCCCCCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeee
Confidence            45566677777888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEE
Q psy13076        159 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITG  238 (423)
Q Consensus       159 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~  238 (423)
                      |+.+.+......+..+..+|.+++|+|+++.+++++.+......+|..+++.....+..|...|.+++|+|++++.+++|
T Consensus        86 d~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sg  165 (311)
T d1nr0a1          86 DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG  165 (311)
T ss_dssp             ESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred             eeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            99887766555666677899999999999999999887777788999999988889999999999999999999889999


Q ss_pred             eCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc-----ccccCCCeEEEE
Q psy13076        239 SEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-----NPAHKGGVYAVA  313 (423)
Q Consensus       239 s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~~~~i~~l~  313 (423)
                      +.|+.|++|+.+..+.......|...|++++|+|+++++++++.|+.|++||..+++....+.     ..+|.+.|.+++
T Consensus       166 s~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~  245 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT  245 (311)
T ss_dssp             ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999988888888999999999999999999999999999999998877655442     236889999999


Q ss_pred             ECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEec
Q psy13076        314 WKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDV  378 (423)
Q Consensus       314 ~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~  378 (423)
                      |+|++++|++|+.|++|+|||++++++++++..+.........+.|+++.+++++.+|.|++||.
T Consensus       246 ~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             cCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            99999999999999999999999999988886655444455677889999999999999999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-42  Score=315.00  Aligned_cols=287  Identities=16%  Similarity=0.239  Sum_probs=232.8

Q ss_pred             cccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccc
Q psy13076         45 GHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS  124 (423)
Q Consensus        45 gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  124 (423)
                      +|.++|.+++|+|++++|+||+ ||.|+|||+++......+                                     ..
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~-------------------------------------~~   90 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV-------------------------------------SQ   90 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS-------------------------------------EE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccccee-------------------------------------EE
Confidence            7999999999999999999997 899999999764321110                                     11


Q ss_pred             ccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEE
Q psy13076        125 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVF  204 (423)
Q Consensus       125 ~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~  204 (423)
                      ....+|...|.+++|+|++++|++++.|++|++||+..........+..+...+..++|+|++                 
T Consensus        91 ~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------  153 (337)
T d1gxra_          91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-----------------  153 (337)
T ss_dssp             EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-----------------
T ss_pred             eeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccc-----------------
Confidence            123578999999999999999999999999999998765433333333334444555555443                 


Q ss_pred             eecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC
Q psy13076        205 MSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG  284 (423)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg  284 (423)
                                                 . .+++++.|+.+.+|+....+.......|...+.+++|+|++.++++++.|+
T Consensus       154 ---------------------------~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~  205 (337)
T d1gxra_         154 ---------------------------K-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             ---------------------------S-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ---------------------------c-ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                       3 266778889999999888887777888899999999999999999999999


Q ss_pred             eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEE
Q psy13076        285 KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYL  364 (423)
Q Consensus       285 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l  364 (423)
                      .|++||.++++.+..+   .|...|.+++|+|++++|++++.|+.+++||+++++........  .....+...++|++|
T Consensus       206 ~v~i~d~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~v~~s~~g~~l  280 (337)
T d1gxra_         206 TVRSWDLREGRQLQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE--SCVLSLKFAYCGKWF  280 (337)
T ss_dssp             EEEEEETTTTEEEEEE---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCS--SCEEEEEECTTSSEE
T ss_pred             cccccccccceeeccc---ccccceEEEEEcccccccceeccccccccccccccccccccccc--cccceEEECCCCCEE
Confidence            9999999998877665   37788999999999999999999999999999988876544332  234455667799999


Q ss_pred             EEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        365 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       365 ~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                      ++++.|+.|++||..+... +. ..+|..+|++++|+|++++|+|||.||+|++||+
T Consensus       281 ~s~s~Dg~i~iwd~~~~~~-~~-~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         281 VSTGKDNLLNAWRTPYGAS-IF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSEEEEEETTTCCE-EE-EEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCCE-EE-EccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999987644 33 3568899999999999999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6e-41  Score=301.01  Aligned_cols=289  Identities=21%  Similarity=0.364  Sum_probs=249.9

Q ss_pred             ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         39 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        39 ~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      +.++|+||+++|++|+|+|++++|+||+.||+|++||++++++.                                    
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~------------------------------------   52 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE------------------------------------   52 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC------------------------------------
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE------------------------------------
Confidence            35689999999999999999999999999999999999875432                                    


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                            ..+.+|...|.+++|+|++.+++++..++.+.+|+....+...  .+..+...+.++.|+|++..+++.+.+  
T Consensus        53 ------~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d--  122 (317)
T d1vyhc1          53 ------RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR--TMHGHDHNVSSVSIMPNGDHIVSASRD--  122 (317)
T ss_dssp             ------EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE--CCCCCSSCEEEEEECSSSSEEEEEETT--
T ss_pred             ------EEEeCCCCcEEEEeeeccccccccccccccccccccccccccc--ccccccccceeeeccCCCceEEeeccC--
Confidence                  2346788999999999999999999999999999987665433  334456788999999999998877654  


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCC-----
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS-----  273 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-----  273 (423)
                      ....+|+..++..+..+..+...+.+++++|++.+ +++++.|+.+++|+.........+..+...+.+++++|+     
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  201 (317)
T d1vyhc1         123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS  201 (317)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGG
T ss_pred             cceeEeecccceeeeEEccCCCcceeeecccCCCE-EEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccce
Confidence            34567888888888888899999999999998875 899999999999998887777777888888888888775     


Q ss_pred             ---------------CCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        274 ---------------GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       274 ---------------g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                                     +.++++++.|+.|++||..+++.+.++.  +|...|.+++|+|++++|++++.|++|++||++++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             GGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             eeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe--CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence                           4579999999999999999998887774  58899999999999999999999999999999876


Q ss_pred             ceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEE
Q psy13076        339 SAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITR  418 (423)
Q Consensus       339 ~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~  418 (423)
                      +.+                                            ..+.+|.++|++++|+|++++|+|||.||+|++
T Consensus       280 ~~~--------------------------------------------~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~i  315 (317)
T d1vyhc1         280 RCM--------------------------------------------KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  315 (317)
T ss_dssp             CCC--------------------------------------------EEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             cEE--------------------------------------------EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            432                                            345689999999999999999999999999999


Q ss_pred             ee
Q psy13076        419 WN  420 (423)
Q Consensus       419 W~  420 (423)
                      ||
T Consensus       316 Wd  317 (317)
T d1vyhc1         316 WE  317 (317)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-41  Score=310.32  Aligned_cols=331  Identities=19%  Similarity=0.321  Sum_probs=238.7

Q ss_pred             EEEEeccceEEEEeccCCCCce---eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceE
Q psy13076         19 LLTVSLSGFISYLDVNNPSTPI---RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIV   95 (423)
Q Consensus        19 ~~~~~~dg~i~~~d~~~~~~~~---~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~   95 (423)
                      .+....++...+|+...+....   ....+|.++|+||+|+|+|++|++|+ |++|++||+.+++.+..+........  
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~--  107 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK--  107 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc--
Confidence            3456788899999876544322   12237999999999999999999986 89999999998877665532211000  


Q ss_pred             EeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCC
Q psy13076         96 LGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG  175 (423)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  175 (423)
                                           .. .........+|...|++++|+|++++|++|+.|++|++||....+....  ...+.
T Consensus       108 ---------------------~~-~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~--~~~h~  163 (388)
T d1erja_         108 ---------------------DP-ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI--LQGHE  163 (388)
T ss_dssp             ---------------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCS
T ss_pred             ---------------------cc-cccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccc--ccccc
Confidence                                 00 0001122356888999999999999999999999999999877654432  22233


Q ss_pred             CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee
Q psy13076        176 GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK  255 (423)
Q Consensus       176 ~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~  255 (423)
                      .+|.+++|++++.                                            . +++++.++.+++|+.......
T Consensus       164 ~~v~~~~~~~~~~--------------------------------------------~-~~~~~~~~~i~~~d~~~~~~~  198 (388)
T d1erja_         164 QDIYSLDYFPSGD--------------------------------------------K-LVSGSGDRTVRIWDLRTGQCS  198 (388)
T ss_dssp             SCEEEEEECTTSS--------------------------------------------E-EEEEETTSEEEEEETTTTEEE
T ss_pred             ccccccccccccc--------------------------------------------c-ccccccceeeeeeeccccccc
Confidence            4455555554433                                            2 566788889999998776665


Q ss_pred             eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc-----ccccCCCeEEEEECCCCCeEEEEeCCCcE
Q psy13076        256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG-----NPAHKGGVYAVAWKPDGTQLLTASGDKTC  330 (423)
Q Consensus       256 ~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~~~~i~~l~~~~~~~~l~s~s~d~~i  330 (423)
                      .....+...+..+.+.+++.+|++|+.||.|++|+..++.....+.     ..+|...|.+++|+|++++|++++.|+.|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i  278 (388)
T d1erja_         199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV  278 (388)
T ss_dssp             EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcE
Confidence            5555555544445555688999999999999999999887665442     23578899999999999999999999999


Q ss_pred             EEEecCCcceeeeeee-----------CceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEE
Q psy13076        331 KLWDIETKSAVSEFLM-----------GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALA  399 (423)
Q Consensus       331 ~iwd~~~~~~i~~~~~-----------~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~  399 (423)
                      ++||+.+.........           .+......+...++|.+|++|+.||.|++||+.+. .++..+.+|.++|++++
T Consensus       279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~l~~H~~~V~~~~  357 (388)
T d1erja_         279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVA  357 (388)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEE
T ss_pred             EEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEeCCCCCEEEEE
Confidence            9999987654322111           11122344556678999999999999999999875 45778999999999997


Q ss_pred             e------cCCCCeEEEecCCCcEEEeeCC
Q psy13076        400 L------SPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       400 ~------sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                      +      +|++++|+|||.||+|++|+++
T Consensus       358 ~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         358 VANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             ECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            4      6789999999999999999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-40  Score=302.17  Aligned_cols=293  Identities=23%  Similarity=0.380  Sum_probs=232.1

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      ++.++|+||.++|++|+|+|++++|+||+.||+|++||+.+++...                                  
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~----------------------------------   91 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH----------------------------------   91 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE----------------------------------
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE----------------------------------
Confidence            4567899999999999999999999999999999999998765432                                  


Q ss_pred             cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee--EEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPDNQRMVVVGE  195 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~~~~~~~  195 (423)
                              .+.+|...|.+++|+|++.++++++.|+.+++|+.......  ....+..+..........++ ..+.....
T Consensus        92 --------~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  162 (340)
T d1tbga_          92 --------AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSG  162 (340)
T ss_dssp             --------EEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEEEET
T ss_pred             --------EEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccc-cccccccc
Confidence                    23468889999999999999999999999999997654321  12223333333333333333 33333332


Q ss_pred             CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC
Q psy13076        196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS  275 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  275 (423)
                      ..  ....+.................+....+.+...+ +++++.|+.+++||.+..+....+..|...|++++|+|+++
T Consensus       163 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~  239 (340)
T d1tbga_         163 DT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN  239 (340)
T ss_dssp             TT--EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             cc--cccccccccccccccccccceeEeeeccccccce-eEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCC
Confidence            22  1223333333333444556667777888877765 78899999999999998888888889999999999999999


Q ss_pred             EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEE
Q psy13076        276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQV  355 (423)
Q Consensus       276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~  355 (423)
                      +|++|+.||.|++|+....+....+....+...+.+++|+|++++|++|+.|++|++||+.+++++              
T Consensus       240 ~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~--------------  305 (340)
T d1tbga_         240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA--------------  305 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEE--------------
T ss_pred             EEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEE--------------
Confidence            999999999999999998887766655567788999999999999999999999999998876532              


Q ss_pred             EEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        356 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       356 ~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                                                    ..+.+|..+|++++|+|++++|+|||.||+|++||
T Consensus       306 ------------------------------~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         306 ------------------------------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ------------------------------EEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ------------------------------EEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                                          34578999999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-40  Score=305.97  Aligned_cols=322  Identities=16%  Similarity=0.179  Sum_probs=219.9

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCC-CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeeccc
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPS-TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLP   86 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~   86 (423)
                      .++++++||++||+|+.||.|++||+.++. ..+..|+||.++|++|+|+|++++|+||+.|++|++||++++.....  
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~--   88 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT--   88 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE--
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc--
Confidence            356667799999999999999999997533 35678899999999999999999999999999999999876432211  


Q ss_pred             CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCcee
Q psy13076         87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI  166 (423)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~  166 (423)
                                                            ..+.+|...|++++|+|+++++++++.|+++++|+.+.....
T Consensus        89 --------------------------------------~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~  130 (371)
T d1k8kc_          89 --------------------------------------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW  130 (371)
T ss_dssp             --------------------------------------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             --------------------------------------cccccccccccccccccccccceeecccCcceeeeeeccccc
Confidence                                                  123468889999999999999999999999999998765432


Q ss_pred             E--EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076        167 L--KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI  244 (423)
Q Consensus       167 ~--~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i  244 (423)
                      .  ......+...|.+++|+|+++++++                                             ++.|+++
T Consensus       131 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s---------------------------------------------~s~D~~v  165 (371)
T d1k8kc_         131 WVCKHIKKPIRSTVLSLDWHPNSVLLAA---------------------------------------------GSCDFKC  165 (371)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTSSEEEE---------------------------------------------EETTSCE
T ss_pred             ccccccccccccccccccccccccceec---------------------------------------------cccCcEE
Confidence            1  2223334456667777776665544                                             4444444


Q ss_pred             EEEcCC------------------CceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccC
Q psy13076        245 AVFEGP------------------PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHK  306 (423)
Q Consensus       245 ~~~~~~------------------~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  306 (423)
                      ++|+..                  ..........|...|.+++|+|+|++|++++.|+.|++||..+++.+..+.  .|.
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~  243 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA--SET  243 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE--CSS
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee--ccc
Confidence            444321                  112334456778889999999999999999999999999999988877764  588


Q ss_pred             CCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeC--ceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCc
Q psy13076        307 GGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMG--NQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP  384 (423)
Q Consensus       307 ~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~  384 (423)
                      ..|.+++|+|++++|++| .|+.+++|+.........+...  .+.............+   ...+..........  ..
T Consensus       244 ~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~  317 (371)
T d1k8kc_         244 LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF---QNLDKKASSEGSAA--AG  317 (371)
T ss_dssp             CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHH---HHCCCCC-----------
T ss_pred             ccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeE---ecccceeEEecccc--cc
Confidence            899999999999888765 4777777766543322222110  0000000000000000   00000011100000  00


Q ss_pred             eEEeccCCCceeEEEecCCCC----eEEEecCCCcEEEeeCC
Q psy13076        385 IRVIKGHNKPITALALSPDRG----TVFTGSHDGFITRWNAK  422 (423)
Q Consensus       385 ~~~~~~h~~~v~~i~~sp~~~----~l~s~s~D~~i~~W~~~  422 (423)
                      ......|...|++++++|.+.    .|+|+|.||.|++||++
T Consensus       318 ~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         318 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  359 (371)
T ss_dssp             CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             ceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence            112246999999999988653    58999999999999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-38  Score=291.06  Aligned_cols=338  Identities=16%  Similarity=0.212  Sum_probs=243.9

Q ss_pred             ceeeEE-EEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076          7 DQQVSC-LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus         7 ~~~~~~-~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      +.+++| .+||++||+|+.||.|++||+.+ .+++.+|++|.++|.+++|+|+ .+|+||+.|++|++|+..........
T Consensus        13 ~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~-~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~   90 (355)
T d1nexb2          13 TSVITCLQFEDNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVF   90 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTTEEEEEETTT-TEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             CCcEEEEEECCCEEEEEeCCCeEEEEECCC-CcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccc
Confidence            345665 47999999999999999999976 5778899999999999999985 58999999999999999876543322


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                      .                                        ...+........+++++.++++++.|+.|++||+.+...
T Consensus        91 ~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~  130 (355)
T d1nexb2          91 E----------------------------------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS  130 (355)
T ss_dssp             C----------------------------------------CCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC---
T ss_pred             c----------------------------------------cccccccccccccccccceeeeecCCCcEEEEEccCCce
Confidence            1                                        112233445567788999999999999999999876543


Q ss_pred             eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076        166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA  245 (423)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~  245 (423)
                      .......   .........+......                    ......+...+...  .+++. .++++..|+.++
T Consensus       131 ~~~~~~~---~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~v~~~--~~~~~-~~~~~~~d~~i~  184 (355)
T d1nexb2         131 VPDHGEE---HDYPLVFHTPEENPYF--------------------VGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLI  184 (355)
T ss_dssp             -----------CCCEEESCTTTCTTE--------------------EEEEECCSSCEEEE--EEETT-EEEEEETTSCEE
T ss_pred             ecccccc---ceeccceeccccccce--------------------eeeeeecccccccc--ccccc-eeeeecccceee
Confidence            3221110   1111111122111111                    01111222233332  33344 488899999999


Q ss_pred             EEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076        246 VFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTAS  325 (423)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s  325 (423)
                      +|+....+.......+...+.++.++|++.++++++.|+.|++||.+++..+..+.  +|...|.+++|++  ++|++++
T Consensus       185 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~h~~~v~~~~~~~--~~l~~~~  260 (355)
T d1nexb2         185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ--GHTALVGLLRLSD--KFLVSAA  260 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCCCEEEECS--SEEEEEC
T ss_pred             eeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc--ccccccccccccc--ceeeeee
Confidence            99998888777777888889999999999999999999999999999998877764  6899999999874  6999999


Q ss_pred             CCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCC
Q psy13076        326 GDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRG  405 (423)
Q Consensus       326 ~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~  405 (423)
                      .|++|++||+++.............  ......+++.+++++ .|+.|++||+++++.....+.+|..+|++++|+|+ .
T Consensus       261 ~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~  336 (355)
T d1nexb2         261 ADGSIRGWDANDYSRKFSYHHTNLS--AITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-T  336 (355)
T ss_dssp             TTSEEEEEETTTCCEEEEEECTTCC--CCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-E
T ss_pred             cccccccccccccceecccccCCce--EEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-e
Confidence            9999999999987654443222111  112234466665555 58999999999876543457899999999999987 5


Q ss_pred             eEEEecCCCcEEEee
Q psy13076        406 TVFTGSHDGFITRWN  420 (423)
Q Consensus       406 ~l~s~s~D~~i~~W~  420 (423)
                      ++++++.||++.+|-
T Consensus       337 ~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         337 LVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEEEESSSCEEEEE
T ss_pred             EEEEEECCCcEEEEE
Confidence            788899999876653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-39  Score=291.91  Aligned_cols=277  Identities=18%  Similarity=0.243  Sum_probs=228.2

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCC--cee--ecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceee
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPST--PIR--VIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~--~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      .++++++||++||+|+ ||.|++||+..+..  ++.  ...+|.++|.+++|+|++++|++|+.|++|++||+.....  
T Consensus        55 ~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~--  131 (337)
T d1gxra_          55 CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP--  131 (337)
T ss_dssp             CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----
T ss_pred             EEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc--
Confidence            4567778999999987 89999999875432  222  3458999999999999999999999999999999864211  


Q ss_pred             cccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCC
Q psy13076         84 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK  163 (423)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~  163 (423)
                                                            +....+.+|...+..+.|+|++.++++++.|+.|++|++.+.
T Consensus       132 --------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~  173 (337)
T d1gxra_         132 --------------------------------------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ  173 (337)
T ss_dssp             --------------------------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             --------------------------------------cccccccccccccccccccccccccccccccccccccccccc
Confidence                                                  112234568888999999999999999999999999999887


Q ss_pred             ceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe
Q psy13076        164 EHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT  243 (423)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~  243 (423)
                      +...  ....+..++.+++|++++..+++++.+  ....+|+..++..+... .+...|.+++|+|++.. +++++.|+.
T Consensus       174 ~~~~--~~~~~~~~v~~l~~s~~~~~~~~~~~d--~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~-l~~~~~d~~  247 (337)
T d1gxra_         174 TLVR--QFQGHTDGASCIDISNDGTKLWTGGLD--NTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEW-LAVGMESSN  247 (337)
T ss_dssp             EEEE--EECCCSSCEEEEEECTTSSEEEEEETT--SEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSE-EEEEETTSC
T ss_pred             cccc--ccccccccccccccccccccccccccc--ccccccccccceeeccc-ccccceEEEEEcccccc-cceeccccc
Confidence            6543  334456789999999999988887654  34567777776665544 46678999999999876 788999999


Q ss_pred             EEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEE
Q psy13076        244 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLT  323 (423)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s  323 (423)
                      +++|+...... .....|...|++++|+|+|++|++|+.||.|++||..+++.+..+   .|...|.+++|+|++++|++
T Consensus       248 i~i~d~~~~~~-~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~t  323 (337)
T d1gxra_         248 VEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             EEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEEEE
T ss_pred             ccccccccccc-ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc---cCCCCEEEEEEeCCCCEEEE
Confidence            99999765543 345678889999999999999999999999999999999877665   47789999999999999999


Q ss_pred             EeCCCcEEEEec
Q psy13076        324 ASGDKTCKLWDI  335 (423)
Q Consensus       324 ~s~d~~i~iwd~  335 (423)
                      |+.|++|+|||+
T Consensus       324 ~s~D~~I~vWdl  335 (337)
T d1gxra_         324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EeCCCeEEEEEE
Confidence            999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-38  Score=283.57  Aligned_cols=290  Identities=20%  Similarity=0.275  Sum_probs=222.2

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      +..+++.||+++|++|+|+|++++|+||+.||+|++||+++++....+...+......+.++|+++.++...+..+++|+
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEec
Confidence            34678999999999999999999999999999999999999988887765555566678899999988888889999999


Q ss_pred             cCCCcc---cccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEE
Q psy13076        118 IENPAI---SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG  194 (423)
Q Consensus       118 ~~~~~~---~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~  194 (423)
                      ......   ......|...+..+.|+|+++++++++ ++.+++|+......   ..   ....+.+++|+|+++.     
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~---~~---~~~~~~~~~~s~~~~~-----  150 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTE---VP---ISYNSSCVALSNDKQF-----  150 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEE---EE---CSSCEEEEEECTTSCE-----
T ss_pred             cCCccccccccccccccccccccccccccccccccc-cccccccccccccc---cc---cccccccccccccccc-----
Confidence            865432   223346778899999999999777665 57899998532111   11   1223455555554432     


Q ss_pred             cCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee-eeccccccCeEEEEECCC
Q psy13076        195 EGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK-MTKQEHSRFVQAVRYSPS  273 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~-~~~~~~~~~i~~l~~s~~  273 (423)
                                                              +++++.|+.+.+|+....... .....|...|++++|+|+
T Consensus       151 ----------------------------------------l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  190 (299)
T d1nr0a2         151 ----------------------------------------VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN  190 (299)
T ss_dssp             ----------------------------------------EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT
T ss_pred             ----------------------------------------cccccccccccccccccccccccccccccccccccccccc
Confidence                                                    567788888999986554432 234567888999999999


Q ss_pred             CCEEEEEEecCeEEEEECCCccceecc-cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEe
Q psy13076        274 GSHFASAGFDGKVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVED  352 (423)
Q Consensus       274 g~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~  352 (423)
                      ++++++++.|+.|++||..++...... ....|...|.+++|+|++++|++++.|++|++||++++....          
T Consensus       191 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~----------  260 (299)
T d1nr0a2         191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP----------  260 (299)
T ss_dssp             SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC----------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcce----------
Confidence            999999999999999999877654332 234688999999999999999999999999999998764221          


Q ss_pred             eEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEecc-CCCceeEEEecCCCCeEEEecCCCcEEEeeCC
Q psy13076        353 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKG-HNKPITALALSPDRGTVFTGSHDGFITRWNAK  422 (423)
Q Consensus       353 ~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~  422 (423)
                                                      ...... |...|+++.| |++++|+|+|.|++|++||+.
T Consensus       261 --------------------------------~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         261 --------------------------------IIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             --------------------------------EEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             --------------------------------EEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence                                            111223 4455666655 567899999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-38  Score=281.01  Aligned_cols=295  Identities=19%  Similarity=0.262  Sum_probs=244.2

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      ++++++++++||+|+.||.|++||+.+ .+++.++++|.++|.+++|+|++.++++++.++++..|+.........+.. 
T Consensus        22 ~l~~sp~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   99 (317)
T d1vyhc1          22 RVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG-   99 (317)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC-
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccccc-
Confidence            456667999999999999999999976 567889999999999999999999999999999999999887766554432 


Q ss_pred             CCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeE
Q psy13076         89 QRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL  167 (423)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~  167 (423)
                      .......+.+.+++..++.. .+..+.+|+++++.....+.+|...+.+++|+|++.++++++.|+.|++|+..+.+...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~  179 (317)
T d1vyhc1         100 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA  179 (317)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeE
Confidence            23445567788888877765 46789999999999999999999999999999999999999999999999998876543


Q ss_pred             EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076        168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF  247 (423)
Q Consensus       168 ~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~  247 (423)
                      .  +..+...+..+.|+|++........                        ...........+. .+++++.|+.+++|
T Consensus       180 ~--~~~~~~~i~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~-~~~~~~~d~~i~~~  232 (317)
T d1vyhc1         180 E--LREHRHVVECISWAPESSYSSISEA------------------------TGSETKKSGKPGP-FLLSGSRDKTIKMW  232 (317)
T ss_dssp             E--ECCCSSCEEEEEECCSCGGGGGGGC------------------------CSCC-------CC-EEEEEETTSEEEEE
T ss_pred             E--EecCCCCceEEEEeeccccceeecc------------------------ccceeeeeccCCc-eeEeccCCCEEEEE
Confidence            3  3445677899999998654221100                        0011111122233 47889999999999


Q ss_pred             cCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      +....+....+..|...|.+++++|++++|++|+.||.|++||..+++.+..+.  +|.+.|++++|+|++++|++|+.|
T Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~V~~~~~s~~~~~l~s~s~D  310 (317)
T d1vyhc1         233 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGSVD  310 (317)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSSCEEEEEECSSSSCEEEEETT
T ss_pred             ECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCC
Confidence            998888888888999999999999999999999999999999999999888774  689999999999999999999999


Q ss_pred             CcEEEEe
Q psy13076        328 KTCKLWD  334 (423)
Q Consensus       328 ~~i~iwd  334 (423)
                      ++|+|||
T Consensus       311 g~i~iWd  317 (317)
T d1vyhc1         311 QTVKVWE  317 (317)
T ss_dssp             SEEEEEC
T ss_pred             CeEEEeC
Confidence            9999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.8e-38  Score=283.19  Aligned_cols=281  Identities=14%  Similarity=0.148  Sum_probs=225.4

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccC
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPR   87 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~   87 (423)
                      .+++++++|+.+|.++ ++.|.+||+++ ..+...|.+|.++|++++|+|++++|++|+.||+|++||+.++...     
T Consensus        21 ~~~a~~~~g~~l~~~~-~~~v~i~~~~~-~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~-----   93 (311)
T d1nr0a1          21 VVLGNTPAGDKIQYCN-GTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----   93 (311)
T ss_dssp             CCCEECTTSSEEEEEE-TTEEEEEETTC-SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----
T ss_pred             EEEEEcCCCCEEEEEe-CCEEEEEECCC-CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc-----
Confidence            3678889999999875 66899999976 4566788999999999999999999999999999999999764321     


Q ss_pred             CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc--CCcEEEEEcCCCce
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI--SGKVRIWDTVNKEH  165 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~--d~~i~vwd~~~~~~  165 (423)
                                                         ....+.+|...|.+++|+|+++++++++.  +..+++|+.++.+.
T Consensus        94 -----------------------------------~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~  138 (311)
T d1nr0a1          94 -----------------------------------LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS  138 (311)
T ss_dssp             -----------------------------------EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred             -----------------------------------cccccccccCccccccccccccccccccccccccccccccccccc
Confidence                                               01134568889999999999999999875  46799999987665


Q ss_pred             eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076        166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA  245 (423)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~  245 (423)
                      ..  .+..+...|.+++|+|+++++++.+..+ ....+|+..+++.......|..+|.++.++|++.+ +++++.|+.++
T Consensus       139 ~~--~l~~h~~~v~~v~~~~~~~~~l~sgs~d-~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~-l~~~~~d~~v~  214 (311)
T d1nr0a1         139 NG--NLTGQARAMNSVDFKPSRPFRIISGSDD-NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL-FASTGGDGTIV  214 (311)
T ss_dssp             CB--CCCCCSSCEEEEEECSSSSCEEEEEETT-SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEE
T ss_pred             cc--cccccccccccccccccceeeecccccc-cccccccccccccccccccccccccccccCccccc-ccccccccccc
Confidence            43  3445567899999999999866554433 34578888888888888899999999999999875 88999999999


Q ss_pred             EEcCCCceeeee-------ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccc-cCCCeEEEEECCC
Q psy13076        246 VFEGPPFKFKMT-------KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA-HKGGVYAVAWKPD  317 (423)
Q Consensus       246 ~~~~~~~~~~~~-------~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~i~~l~~~~~  317 (423)
                      +|+.........       ..+|...|++++|+|+|++|++|+.||.|++||.++++++.++.... +...+.++  .++
T Consensus       215 ~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~--~~~  292 (311)
T d1nr0a1         215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI--IWT  292 (311)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE--EEC
T ss_pred             ccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEE--Eec
Confidence            999765443322       23577889999999999999999999999999999999887774311 12234444  445


Q ss_pred             CCeEEEEeCCCcEEEEecC
Q psy13076        318 GTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       318 ~~~l~s~s~d~~i~iwd~~  336 (423)
                      +++|++++.||.|++||..
T Consensus       293 ~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         293 KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SSCEEEEETTCCEEEEETT
T ss_pred             CCEEEEEECCCEEEEEeCC
Confidence            6789999999999999963

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-37  Score=277.44  Aligned_cols=326  Identities=19%  Similarity=0.291  Sum_probs=240.2

Q ss_pred             CCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEE
Q psy13076         36 PSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVII  115 (423)
Q Consensus        36 ~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  115 (423)
                      +.++..+|+||+++|.+ +++++|++|||||.||+|++||+++++++.                                
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~--------------------------------   51 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--------------------------------   51 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE--------------------------------
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE--------------------------------
Confidence            35677899999999865 366678999999999999999998765433                                


Q ss_pred             EecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEc
Q psy13076        116 RNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGE  195 (423)
Q Consensus       116 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~  195 (423)
                                .+.+|...|.+++|+|+  ++++++.|+++++|+..........  ......+......+  ..+.....
T Consensus        52 ----------~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~  115 (342)
T d2ovrb2          52 ----------TLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTL--YGHTSTVRCMHLHE--KRVVSGSR  115 (342)
T ss_dssp             ----------ECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEEET--TEEEEEET
T ss_pred             ----------EEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecc--cccceeEeeeeccc--cccccccc
Confidence                      34579999999999875  9999999999999998766543322  22223344333333  33333332


Q ss_pred             CCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCC
Q psy13076        196 GRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGS  275 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  275 (423)
                      +  ....++...++.....+.........  ..+... .+++++.|+.+++|+............|...+..+  ++++.
T Consensus       116 d--~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~  188 (342)
T d2ovrb2         116 D--ATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGI  188 (342)
T ss_dssp             T--SEEEEEESSSCCEEEEEECCSSCEEE--EEECSS-CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSS
T ss_pred             c--eeEEEeecccccceeeeeccccccee--eccccc-eeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCC
Confidence            2  22445555555544444333322222  223333 47889999999999988777777777777665554  45788


Q ss_pred             EEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEE
Q psy13076        276 HFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQV  355 (423)
Q Consensus       276 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~  355 (423)
                      ++++|+.||.|++||.+.++.+..+.  .|...+.+++++  +++|++++.|++|++||+...+....+...........
T Consensus       189 ~l~s~~~dg~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  264 (342)
T d2ovrb2         189 HVVSGSLDTSIRVWDVETGNCIHTLT--GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT  264 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC--CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEE
T ss_pred             EEEEEeCCCeEEEeecccceeeeEec--ccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeecee
Confidence            99999999999999999988877664  578888888775  46999999999999999998877666544333333344


Q ss_pred             EEEecCcEEEEEeCCCcEEEEecCCCCCceEEe-----ccCCCceeEEEecCCCCeEEEecCCCc----EEEeeCC
Q psy13076        356 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI-----KGHNKPITALALSPDRGTVFTGSHDGF----ITRWNAK  422 (423)
Q Consensus       356 ~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~-----~~h~~~v~~i~~sp~~~~l~s~s~D~~----i~~W~~~  422 (423)
                      .+.++++++++++.||.|++||+++++. ++.+     .+|..+|++++|+|++.+|++|+.||+    |++||..
T Consensus       265 ~~~~~~~~~~s~s~Dg~i~iwd~~tg~~-i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         265 CLQFNKNFVITSSDDGTVKLWDLKTGEF-IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEECSSEEEEEETTSEEEEEETTTCCE-EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             ecccCCCeeEEEcCCCEEEEEECCCCCE-EEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            5567899999999999999999988653 4443     378899999999999999999999986    9999975

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-36  Score=272.41  Aligned_cols=291  Identities=31%  Similarity=0.604  Sum_probs=227.5

Q ss_pred             CCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC--C--cccccccCCc-ceEEEEEECC--CCCEEEEEccCCcEEEEE
Q psy13076         87 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN--P--AISDIYTEHS-CAVNVAKYSP--SGFYIASGDISGKVRIWD  159 (423)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~--~~~~~~~~h~-~~i~~~~~sp--~~~~l~s~~~d~~i~vwd  159 (423)
                      ...++....+.++|++..+++..+....++.++.  .  .....+.+|. ..|++++|+|  +++++|+|+.||+|++||
T Consensus        14 ~t~~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd   93 (325)
T d1pgua1          14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   93 (325)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEee
Confidence            3445566678889999999998887766655443  2  2344567774 6899999998  678999999999999999


Q ss_pred             cCCCcee------EEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCe
Q psy13076        160 TVNKEHI------LKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPF  233 (423)
Q Consensus       160 ~~~~~~~------~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  233 (423)
                      +...+..      ....+..+.++|.+++|+|+++.+++++.+.+....++.++++..+..+.+|...+.+++|+|++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             ecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccc
Confidence            8654321      1223445678899999999999999999888888889999999999999999999999999999998


Q ss_pred             eEEEEeCCCeEEEEcCCCceeeee---ccccccCeEEEEECCC-CCEEEEEEecCeEEEEECCCccceecccccccCCCe
Q psy13076        234 RIITGSEDNTIAVFEGPPFKFKMT---KQEHSRFVQAVRYSPS-GSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGV  309 (423)
Q Consensus       234 ~~~s~s~d~~i~~~~~~~~~~~~~---~~~~~~~i~~l~~s~~-g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i  309 (423)
                      .+++++.|+.+++|+.+..+....   ...|...|.+++|+|+ +.++++++.||.|++||.++++.+..+.  +|...+
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~--~~~~~v  251 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE--DDQEPV  251 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC--BTTBCC
T ss_pred             eEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc--cccccc
Confidence            889999999999999887665443   3456778999999997 6789999999999999999999887774  355554


Q ss_pred             EEEEEC---CCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceE
Q psy13076        310 YAVAWK---PDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIR  386 (423)
Q Consensus       310 ~~l~~~---~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~  386 (423)
                      .++.|+   |++++|++++.|++|+|||+++++++..+..                                        
T Consensus       252 ~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~----------------------------------------  291 (325)
T d1pgua1         252 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL----------------------------------------  291 (325)
T ss_dssp             CSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC----------------------------------------
T ss_pred             ccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe----------------------------------------
Confidence            444443   6899999999999999999998876655421                                        


Q ss_pred             EeccCCCceeEEEecCC-CCeEEEecCCCcEEEeeC
Q psy13076        387 VIKGHNKPITALALSPD-RGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       387 ~~~~h~~~v~~i~~sp~-~~~l~s~s~D~~i~~W~~  421 (423)
                        .+|...+..+++.+. +.+|+|+|.||+|++||+
T Consensus       292 --~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         292 --DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             --CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             --cCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence              223333444444432 347889999999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-35  Score=268.31  Aligned_cols=275  Identities=20%  Similarity=0.223  Sum_probs=214.0

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcce----eec
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYI----FAT   84 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~----~~~   84 (423)
                      ++++++||.+||+|+.||.|++||+.+ .+.+..+++|.++|.+++|+|++.++++|+.|+++++|+......    ...
T Consensus        60 ~l~~s~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~  138 (340)
T d1tbga_          60 AMHWGTDSRLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE  138 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEE
T ss_pred             EEEECCCCCEEEEEECCCceeeeeccc-ceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccccccccee
Confidence            455666999999999999999999976 566788999999999999999999999999999999999765432    111


Q ss_pred             ccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCc
Q psy13076         85 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE  164 (423)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~  164 (423)
                      +.. .....................+.....+.............+...+....+.+.+.++++++.|+.|++||+++.+
T Consensus       139 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~  217 (340)
T d1tbga_         139 LAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM  217 (340)
T ss_dssp             ECC-CSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred             ccc-ccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCc
Confidence            111 1112222222233333344455666777776666666677788899999999999999999999999999998765


Q ss_pred             eeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076        165 HILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTI  244 (423)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i  244 (423)
                      ....  +..+..+|.+++|+|+++.                                             +++++.|+.+
T Consensus       218 ~~~~--~~~h~~~i~~v~~~p~~~~---------------------------------------------l~s~s~d~~i  250 (340)
T d1tbga_         218 CRQT--FTGHESDINAICFFPNGNA---------------------------------------------FATGSDDATC  250 (340)
T ss_dssp             EEEE--ECCCSSCEEEEEECTTSSE---------------------------------------------EEEEETTSCE
T ss_pred             EEEE--EeCCCCCeEEEEECCCCCE---------------------------------------------EEEEeCCCeE
Confidence            4432  2333455555555555432                                             6678889999


Q ss_pred             EEEcCCCceeeee--ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEE
Q psy13076        245 AVFEGPPFKFKMT--KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL  322 (423)
Q Consensus       245 ~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  322 (423)
                      ++|+.........  ...+...+.+++|+|+|++|++|+.||.|++||..+++.+..+.  +|.+.|++++|+|++++|+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~H~~~V~~l~~s~d~~~l~  328 (340)
T d1tbga_         251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA--GHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             EEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEE
T ss_pred             EEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEeCCCCEEE
Confidence            9998776554433  34566779999999999999999999999999999999888774  6899999999999999999


Q ss_pred             EEeCCCcEEEEe
Q psy13076        323 TASGDKTCKLWD  334 (423)
Q Consensus       323 s~s~d~~i~iwd  334 (423)
                      ||+.|++|+|||
T Consensus       329 s~s~Dg~v~iWd  340 (340)
T d1tbga_         329 TGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEccCCEEEEeC
Confidence            999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-35  Score=275.87  Aligned_cols=283  Identities=22%  Similarity=0.310  Sum_probs=214.7

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeec------------------ccccCceeEEEEeCCCCeEEEecCCCc
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI------------------KGHNKPITALALSPDRGTVFTGSHDGF   70 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~------------------~gh~~~V~~l~~~~~~~~l~sg~~D~~   70 (423)
                      ++++++||++||+|+ ||.|++||+.++ +.+..+                  .+|...|.+++|+|++++|++|+.||+
T Consensus        67 ~l~fs~dg~~lasg~-d~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~  144 (388)
T d1erja_          67 CVKFSNDGEYLATGC-NKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL  144 (388)
T ss_dssp             EEEECTTSSEEEEEC-BSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEECCCCCEEEEEe-CCeEEEEEeccc-ceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccc
Confidence            455566999999986 999999998753 333333                  357788999999999999999999999


Q ss_pred             eEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEE
Q psy13076         71 ITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG  149 (423)
Q Consensus        71 i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~  149 (423)
                      |++||...++....... +......+.+.+++..++.. ....+++|+.++.........+...+....+.+++.+|+++
T Consensus       145 v~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  223 (388)
T d1erja_         145 IRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG  223 (388)
T ss_dssp             EEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEE
T ss_pred             ccccccccccccccccc-ccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEE
Confidence            99999998877666543 23444566778888776664 46789999999887777777676666555555689999999


Q ss_pred             ccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEec
Q psy13076        150 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKP  229 (423)
Q Consensus       150 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  229 (423)
                      +.|+.|++||..+..........                                       .....+|...|.+++|+|
T Consensus       224 ~~d~~i~i~~~~~~~~~~~~~~~---------------------------------------~~~~~~h~~~v~~l~~s~  264 (388)
T d1erja_         224 SLDRAVRVWDSETGFLVERLDSE---------------------------------------NESGTGHKDSVYSVVFTR  264 (388)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC---------------------------------------------CCCSSCEEEEEECT
T ss_pred             cCCCeEEEeecccCccceeeccc---------------------------------------cccccCCCCCEEEEEECC
Confidence            99999999999876543321110                                       001123445566666666


Q ss_pred             CCCeeEEEEeCCCeEEEEcCCCce------------eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccce
Q psy13076        230 SRPFRIITGSEDNTIAVFEGPPFK------------FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV  297 (423)
Q Consensus       230 ~~~~~~~s~s~d~~i~~~~~~~~~------------~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~  297 (423)
                      ++.+ +++++.|+.+++|+.....            .......|...|.+++|+|+|++|++|+.||.|++||.++++.+
T Consensus       265 ~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         265 DGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             TSSE-EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCE-EEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence            6554 6777788888888754321            22334567888999999999999999999999999999999988


Q ss_pred             ecccccccCCCeEEEEE------CCCCCeEEEEeCCCcEEEEecC
Q psy13076        298 SELGNPAHKGGVYAVAW------KPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       298 ~~~~~~~~~~~i~~l~~------~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      .++.  +|.+.|.++++      +|++++|+||+.|++|+|||++
T Consensus       344 ~~l~--~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         344 LMLQ--GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEE--CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEe--CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            8774  69999999875      6789999999999999999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-35  Score=274.31  Aligned_cols=244  Identities=17%  Similarity=0.253  Sum_probs=185.7

Q ss_pred             cCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccc
Q psy13076         47 NKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI  126 (423)
Q Consensus        47 ~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  126 (423)
                      .+||+|++|+|++++||+|+.|+.|++||.++++..                                        ....
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~----------------------------------------~~~~   46 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV----------------------------------------QVHE   46 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE----------------------------------------EEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE----------------------------------------EEEE
Confidence            479999999999999999999999999998764321                                        1224


Q ss_pred             ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEee
Q psy13076        127 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS  206 (423)
Q Consensus       127 ~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~  206 (423)
                      +.+|...|++++|+|++++|++++.|++|++||+.+........+..+..+|.+++|+|+++.                 
T Consensus        47 l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~-----------------  109 (371)
T d1k8kc_          47 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK-----------------  109 (371)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE-----------------
T ss_pred             ecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccccccc-----------------
Confidence            568999999999999999999999999999999976654433334444455666666665554                 


Q ss_pred             cCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCC----ceeeeeccccccCeEEEEECCCCCEEEEEEe
Q psy13076        207 ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPP----FKFKMTKQEHSRFVQAVRYSPSGSHFASAGF  282 (423)
Q Consensus       207 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~----~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~  282 (423)
                                                  +++++.|+.+++|+...    .........|...|.+++|+|+|++|++|+.
T Consensus       110 ----------------------------l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~  161 (371)
T d1k8kc_         110 ----------------------------FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  161 (371)
T ss_dssp             ----------------------------EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             ----------------------------ceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc
Confidence                                        45566677777765322    1223345567888999999999999999999


Q ss_pred             cCeEEEEECCCcccee----------------cccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076        283 DGKVFLYDGASADLVS----------------ELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       283 dg~i~vwd~~~~~~~~----------------~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      |+.|++|+........                ......|...|.+++|+|++++|++++.|++|++||+.+++.+     
T Consensus       162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~-----  236 (371)
T d1k8kc_         162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV-----  236 (371)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE-----
T ss_pred             CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccce-----
Confidence            9999999976433111                0112357888999999999999999999999999999776533     


Q ss_pred             CceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEee
Q psy13076        347 GNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWN  420 (423)
Q Consensus       347 ~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~  420 (423)
                                                             ..+.+|..+|++++|+|++++|++|+ |+.+++|.
T Consensus       237 ---------------------------------------~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~  270 (371)
T d1k8kc_         237 ---------------------------------------ATLASETLPLLAVTFITESSLVAAGH-DCFPVLFT  270 (371)
T ss_dssp             ---------------------------------------EEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEE
T ss_pred             ---------------------------------------eeeecccccceeeeecCCCCEEEEEc-CCceEEEE
Confidence                                                   33456788899999999988777655 67766664

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.8e-35  Score=262.40  Aligned_cols=275  Identities=17%  Similarity=0.237  Sum_probs=200.8

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCceeec-ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeec--c
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVI-KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFAT--L   85 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~--~   85 (423)
                      ++++++||++||+|+.||.|++||+.++ ++.+++ .+|.++|++++|+|+++ +++++.|+++++|+.........  .
T Consensus        17 ~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~   94 (299)
T d1nr0a2          17 ALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAV   94 (299)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCCccccccccc
Confidence            4677789999999999999999999864 455666 57999999999999986 55677899999999865432111  1


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                      ..........+.++++++.++....+.+.+|+...  .......  ..+.+++|+|+++++++++.|+.|++||+++.+.
T Consensus        95 ~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~~~--~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~  170 (299)
T d1nr0a2          95 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVPIS--YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV  170 (299)
T ss_dssp             EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred             ccccccccccccccccccccccccccccccccccc--ccccccc--cccccccccccccccccccccccccccccccccc
Confidence            11123345567788999988888888899998542  2233323  3577899999999999999999999999876543


Q ss_pred             eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076        166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA  245 (423)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~  245 (423)
                      ... ....+..+|.+++|+|+++                                            + +++++.|+.++
T Consensus       171 ~~~-~~~~~~~~i~~~~~~~~~~--------------------------------------------~-l~~~~~d~~i~  204 (299)
T d1nr0a2         171 SEV-KTIVHPAEITSVAFSNNGA--------------------------------------------F-LVATDQSRKVI  204 (299)
T ss_dssp             EEE-EEEECSSCEEEEEECTTSS--------------------------------------------E-EEEEETTSCEE
T ss_pred             ccc-ccccccccccccccccccc--------------------------------------------c-ccccccccccc
Confidence            221 1112234455555555443                                            3 56677888888


Q ss_pred             EEcCCCcee---eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccc-cCCCeEEEEECCCCCeE
Q psy13076        246 VFEGPPFKF---KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA-HKGGVYAVAWKPDGTQL  321 (423)
Q Consensus       246 ~~~~~~~~~---~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l  321 (423)
                      +|+......   ......|...|++++|+|+|++|++|+.||.|++||++++.....+.... +...+.++.| +++++|
T Consensus       205 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l  283 (299)
T d1nr0a2         205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTI  283 (299)
T ss_dssp             EEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEE
T ss_pred             cccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEE
Confidence            888543222   23445688899999999999999999999999999998766443332223 3455666655 567899


Q ss_pred             EEEeCCCcEEEEecC
Q psy13076        322 LTASGDKTCKLWDIE  336 (423)
Q Consensus       322 ~s~s~d~~i~iwd~~  336 (423)
                      ++++.|++|++||+.
T Consensus       284 ~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         284 VSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEETTSCEEEEECC
T ss_pred             EEEeCCCEEEEEecc
Confidence            999999999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.5e-36  Score=265.09  Aligned_cols=282  Identities=23%  Similarity=0.324  Sum_probs=205.7

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      +++++|+||.++|++|+|+|    |+||+.||+|++||+.++                                      
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------------------------------------   41 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------------------------------------   41 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------------------------------------
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------------------------------------
Confidence            57889999999999999987    899999999999998652                                      


Q ss_pred             cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                               ..+|...|.++.+++++ .+++++.|+++++|+....+         ....+..+++++++..+++.... 
T Consensus        42 ---------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-  101 (287)
T d1pgua2          42 ---------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE---------FGSQPKVASANNDGFTAVLTNDD-  101 (287)
T ss_dssp             ---------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE---------CSSCEEEEEECSSSEEEEEETTS-
T ss_pred             ---------CCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc---------cccceeeeeeccCCceEEEeecc-
Confidence                     13588889999998765 57899999999999975321         12456778889888766654322 


Q ss_pred             ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec-cccccCeEEEEECCCCCE
Q psy13076        198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK-QEHSRFVQAVRYSPSGSH  276 (423)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~  276 (423)
                      .  ..++....+..+..+....   ....+++++...++++..++.+++|+.......... ..+...+++++|+|+|++
T Consensus       102 ~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  176 (287)
T d1pgua2         102 D--LLILQSFTGDIIKSVRLNS---PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY  176 (287)
T ss_dssp             E--EEEEETTTCCEEEEEECSS---CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE
T ss_pred             c--ceeeeccceeeeeeccccc---eeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccc
Confidence            2  2345555555555544332   234567777765555555568999997655544433 346678999999999999


Q ss_pred             EEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEE
Q psy13076        277 FASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVS  356 (423)
Q Consensus       277 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~  356 (423)
                      |++|+.||.|++||..+++..... ...|...|.+++|+|.+.......                               
T Consensus       177 l~~g~~dg~i~i~d~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~~~~~-------------------------------  224 (287)
T d1pgua2         177 IAAGDVMGKILLYDLQSREVKTSR-WAFRTSKINAISWKPAEKGANEEE-------------------------------  224 (287)
T ss_dssp             EEEEETTSCEEEEETTTTEEEECC-SCCCSSCEEEEEECCCC------C-------------------------------
T ss_pred             cccccccccccceeeccccccccc-ccccccccceeeeccccccccccc-------------------------------
Confidence            999999999999999888765432 246899999999998754222111                               


Q ss_pred             EEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeC
Q psy13076        357 CLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       357 ~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~  421 (423)
                        .++.++++|+.|+.+++|++..+...+..+.+|..+|++++|+|++ .|+|+|.|++|++|++
T Consensus       225 --~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         225 --IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             --CSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             --CCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence              1334455555555555665555455567778999999999999986 6889999999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-32  Score=248.09  Aligned_cols=313  Identities=17%  Similarity=0.244  Sum_probs=234.6

Q ss_pred             ceeeEE-EEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076          7 DQQVSC-LWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus         7 ~~~~~~-~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      +.+++| .+||++||+|+.||.|++||+.+ .+++.++++|.++|.+++|+|+  +|++|+.|+++++|+..........
T Consensus        17 ~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~   93 (342)
T d2ovrb2          17 DHVITCLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTL   93 (342)
T ss_dssp             TSCEEEEEEETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CceEEEEEECCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecc
Confidence            445554 58999999999999999999976 6788899999999999999975  8999999999999998876544333


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCce
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH  165 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~  165 (423)
                      ...  ...+...............+..+.+|+..+++....+..+......  +.+...++++++.|+.|++||....+.
T Consensus        94 ~~~--~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~  169 (342)
T d2ovrb2          94 YGH--TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETC  169 (342)
T ss_dssp             CCC--SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--EEECSSCEEEEETTSCEEEEEGGGTEE
T ss_pred             ccc--ceeEeeeecccccccccccceeEEEeecccccceeeeeccccccee--eccccceeeeecCCCeEEEeeccccee
Confidence            211  1122222222233344455678899999888776666555544333  344567889999999999999987665


Q ss_pred             eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEE
Q psy13076        166 ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIA  245 (423)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~  245 (423)
                      ...  +..+..  ....+++++..+++++.+.  ...+|+...+..+.....|...+.++.++++   .+++++.|+.|+
T Consensus       170 ~~~--~~~~~~--~~~~~~~~~~~l~s~~~dg--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~s~d~~i~  240 (342)
T d2ovrb2         170 LHT--LQGHTN--RVYSLQFDGIHVVSGSLDT--SIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVK  240 (342)
T ss_dssp             EEE--ECCCSS--CEEEEEECSSEEEEEETTS--CEEEEETTTCCEEEEECCCCSCEEEEEEETT---EEEEEETTSCEE
T ss_pred             eEE--EcCccc--ccccccCCCCEEEEEeCCC--eEEEeecccceeeeEecccccceeEEecCCC---EEEEEcCCCEEE
Confidence            433  333333  3445556778887776543  3578888888888888889888988887764   589999999999


Q ss_pred             EEcCCCceeeeecc---ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc---ccccCCCeEEEEECCCCC
Q psy13076        246 VFEGPPFKFKMTKQ---EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG---NPAHKGGVYAVAWKPDGT  319 (423)
Q Consensus       246 ~~~~~~~~~~~~~~---~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~i~~l~~~~~~~  319 (423)
                      +|+....+......   .|...+.++.++  +.++++|+.||.|++||+++++.+.++.   ..+|...|++++|+|++.
T Consensus       241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~  318 (342)
T d2ovrb2         241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL  318 (342)
T ss_dssp             EEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             EEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC
Confidence            99987665544433   345566666665  5699999999999999999998876653   245778899999999999


Q ss_pred             eEEEEeCCCc----EEEEecCC
Q psy13076        320 QLLTASGDKT----CKLWDIET  337 (423)
Q Consensus       320 ~l~s~s~d~~----i~iwd~~~  337 (423)
                      +|++|+.||+    |++||+..
T Consensus       319 ~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         319 VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEeCCCCCeeEEEEEeCCC
Confidence            9999999986    99999853

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-33  Score=255.82  Aligned_cols=283  Identities=22%  Similarity=0.295  Sum_probs=202.3

Q ss_pred             eeecccccCce-eEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         40 IRVIKGHNKPI-TALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        40 ~~~~~gh~~~V-~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      ..+|+||.+.| +|++|  ++++|+||+.||+|++||+++++++.                                   
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~-----------------------------------   47 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL-----------------------------------   47 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE-----------------------------------
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE-----------------------------------
Confidence            45799998886 55655  57899999999999999998765432                                   


Q ss_pred             CCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE  198 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~  198 (423)
                             .+.+|...|++++|+|+ .+|++++.|++|++|+....+..................++++++.         
T Consensus        48 -------~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  110 (355)
T d1nexb2          48 -------QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY---------  110 (355)
T ss_dssp             -------EEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEE---------
T ss_pred             -------EEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccce---------
Confidence                   34679999999999986 5899999999999999987665433322222222233334444443         


Q ss_pred             eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee-----------------------e
Q psy13076        199 RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF-----------------------K  255 (423)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~-----------------------~  255 (423)
                                                          +++++.|+.+++|+.+....                       .
T Consensus       111 ------------------------------------~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2         111 ------------------------------------IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             ------------------------------------EEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ------------------------------------eeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence                                                44455555555554332111                       0


Q ss_pred             eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076        256 MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       256 ~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~  335 (423)
                      .....|...+  ..+.+++++++++..|+.|++||..+++.+....  .+...+.++.|+|+++++++++.|++|++||+
T Consensus       155 ~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  230 (355)
T d1nexb2         155 GVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS--GHTDRIYSTIYDHERKRCISASMDTTIRIWDL  230 (355)
T ss_dssp             EEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             eeeeeccccc--cccccccceeeeecccceeeeeecccccceeeee--ccccccccccccccceeeecccccceEEeeec
Confidence            1111222223  3456778999999999999999999888776553  46778899999999999999999999999999


Q ss_pred             CCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEe-cCCCCeEEEecCCC
Q psy13076        336 ETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALAL-SPDRGTVFTGSHDG  414 (423)
Q Consensus       336 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~-sp~~~~l~s~s~D~  414 (423)
                      +++..+..+.... ...  ..+.++++++++++.||.|++||+++..   ..+..|...+.++.+ +|++++|++| .|+
T Consensus       231 ~~~~~~~~~~~h~-~~v--~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~  303 (355)
T d1nexb2         231 ENGELMYTLQGHT-ALV--GLLRLSDKFLVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSDNILVSG-SEN  303 (355)
T ss_dssp             TTCCEEEEECCCS-SCC--CEEEECSSEEEEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECSSEEEEE-ETT
T ss_pred             ccccccccccccc-ccc--cccccccceeeeeecccccccccccccc---eecccccCCceEEEEEcCCCCEEEEE-eCC
Confidence            9998877764322 112  2344578999999999999999998754   345677778887655 5666655554 589


Q ss_pred             cEEEeeCCC
Q psy13076        415 FITRWNAKT  423 (423)
Q Consensus       415 ~i~~W~~~~  423 (423)
                      .|++||+++
T Consensus       304 ~i~vwd~~t  312 (355)
T d1nexb2         304 QFNIYNLRS  312 (355)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEECCC
Confidence            999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-33  Score=254.48  Aligned_cols=284  Identities=16%  Similarity=0.201  Sum_probs=208.9

Q ss_pred             eeEEEEeCCEEEEEeccc-eEEEEeccC-CCCceeecccc-cCceeEEEEeC--CCCeEEEecCCCceEEeecCCcceee
Q psy13076          9 QVSCLWQGDYLLTVSLSG-FISYLDVNN-PSTPIRVIKGH-NKPITALALSP--DRGTVFTGSHDGFITRWNAKTEYIFA   83 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg-~i~~~d~~~-~~~~~~~~~gh-~~~V~~l~~~~--~~~~l~sg~~D~~i~vW~~~~~~~~~   83 (423)
                      +++++++|+.+|.++.+. .|+.||... ....+..+.|| ..+|++++|+|  ++++|+||+.||+|++||+..+....
T Consensus        22 ~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~  101 (325)
T d1pgua1          22 HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN  101 (325)
T ss_dssp             CCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCccee
Confidence            466777899999887664 356676533 22345577887 46899999998  56799999999999999987643222


Q ss_pred             ccc-------CCCCCCceEEeeCCCCCeEEEec---CCeEEEEecCCCcccccccCCcceEEEEEECCCCCE-EEEEccC
Q psy13076         84 TLP-------RTQRGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFY-IASGDIS  152 (423)
Q Consensus        84 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~s~~~d  152 (423)
                      .+.       ....+....+.++++++.++...   +..+.+|+.+++.....+.+|...|++++|+|++.+ +++++.|
T Consensus       102 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d  181 (325)
T d1pgua1         102 SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD  181 (325)
T ss_dssp             EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             eeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecc
Confidence            211       11234455688899998877643   356889999999999999999999999999998765 6789999


Q ss_pred             CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCC
Q psy13076        153 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP  232 (423)
Q Consensus       153 ~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  232 (423)
                      +.+++||....+.......                                           ...+...|.+++|+|+..
T Consensus       182 ~~v~~~d~~~~~~~~~~~~-------------------------------------------~~~~~~~v~~v~~~pd~~  218 (325)
T d1pgua1         182 GSVVFYQGPPFKFSASDRT-------------------------------------------HHKQGSFVRDVEFSPDSG  218 (325)
T ss_dssp             TEEEEEETTTBEEEEEECS-------------------------------------------SSCTTCCEEEEEECSTTC
T ss_pred             cccccccccccccceeccc-------------------------------------------ccCCCCccEEeeeccccc
Confidence            9999999866543221110                                           112333455556666544


Q ss_pred             eeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEEC---CCCCEEEEEEecCeEEEEECCCccceecccccccCCCe
Q psy13076        233 FRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYS---PSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGV  309 (423)
Q Consensus       233 ~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s---~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i  309 (423)
                      ..+++++.|+.|++||.+..+....+..|...+..+.|+   |+|++|++++.|+.|++||+++++.+..+....+...+
T Consensus       219 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~  298 (325)
T d1pgua1         219 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN  298 (325)
T ss_dssp             CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred             eeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccC
Confidence            457889999999999988888777777777776655555   78999999999999999999999988776544444444


Q ss_pred             EEEEECCC-CCeEEEEeCCCcEEEEec
Q psy13076        310 YAVAWKPD-GTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       310 ~~l~~~~~-~~~l~s~s~d~~i~iwd~  335 (423)
                      ..+++.+. +.+|++++.|++|++||+
T Consensus       299 ~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         299 QQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            44444432 347899999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-32  Score=242.36  Aligned_cols=273  Identities=21%  Similarity=0.326  Sum_probs=202.4

Q ss_pred             EEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCC
Q psy13076         11 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQR   90 (423)
Q Consensus        11 ~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~   90 (423)
                      .+.|||++||+|+.||.|++||+.+ .+++.+|++|.++|.+++|  ++++|+||+.|++|++|++..+........   
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~-~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~---   93 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH---   93 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC---
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccc---
Confidence            3468999999999999999999976 6788899999999999987  567999999999999999987654332210   


Q ss_pred             CCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe-
Q psy13076         91 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN-  169 (423)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~-  169 (423)
                                                             +...  ...+.+....++++..++.+++|+.......... 
T Consensus        94 ---------------------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (293)
T d1p22a2          94 ---------------------------------------HCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR  132 (293)
T ss_dssp             ---------------------------------------CCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred             ---------------------------------------cccc--cccccccccceeecccccceeEeeccccccccccc
Confidence                                                   0011  1123345567889999999999998765432111 


Q ss_pred             eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC
Q psy13076        170 EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG  249 (423)
Q Consensus       170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~  249 (423)
                      .+.                                            .+...+....+.+.   .+++++.|+.+++|+.
T Consensus       133 ~~~--------------------------------------------~~~~~v~~~~~~~~---~~~~~s~d~~i~~~d~  165 (293)
T d1p22a2         133 VLV--------------------------------------------GHRAAVNVVDFDDK---YIVSASGDRTIKVWNT  165 (293)
T ss_dssp             EEC--------------------------------------------CCSSCEEEEEEETT---EEEEEETTSEEEEEET
T ss_pred             ccc--------------------------------------------ccccccccceeccc---ccccccCCCceeeecC
Confidence            111                                            11222333333322   3667889999999998


Q ss_pred             CCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCc
Q psy13076        250 PPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKT  329 (423)
Q Consensus       250 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~  329 (423)
                      ...+....+..+...+..+.++  +.++++++.||.|++||.++.+.+....  +|...+..  +++++.+|++++.|++
T Consensus       166 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~--~~~~~~~l~sg~~dg~  239 (293)
T d1p22a2         166 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRC--IRFDNKRIVSGAYDGK  239 (293)
T ss_dssp             TTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEE--EECCSSEEEEEETTSC
T ss_pred             CCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeec--ccceeeee--ccccceEEEEEcCCCE
Confidence            8877777777777777777664  5689999999999999999888776653  46666654  5667889999999999


Q ss_pred             EEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEE
Q psy13076        330 CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFT  409 (423)
Q Consensus       330 i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s  409 (423)
                      |++||+.........                                   ....+++.+.+|.++|++++|+  +++|+|
T Consensus       240 i~iwd~~~~~~~~~~-----------------------------------~~~~~~~~~~~H~~~V~~v~~d--~~~l~s  282 (293)
T d1p22a2         240 IKVWDLVAALDPRAP-----------------------------------AGTLCLRTLVEHSGRVFRLQFD--EFQIVS  282 (293)
T ss_dssp             EEEEEHHHHTSTTSC-----------------------------------TTTTEEEEECCCSSCCCCEEEC--SSCEEE
T ss_pred             EEEEECCCCcccccc-----------------------------------CCceeeEEecCCCCCEEEEEEc--CCEEEE
Confidence            999998765422110                                   1123456788999999999995  678999


Q ss_pred             ecCCCcEEEee
Q psy13076        410 GSHDGFITRWN  420 (423)
Q Consensus       410 ~s~D~~i~~W~  420 (423)
                      +|.||+|++||
T Consensus       283 ~s~Dg~i~iWD  293 (293)
T d1p22a2         283 SSHDDTILIWD  293 (293)
T ss_dssp             CCSSSEEEEEC
T ss_pred             EecCCEEEEeC
Confidence            99999999998

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-32  Score=250.35  Aligned_cols=280  Identities=15%  Similarity=0.209  Sum_probs=181.5

Q ss_pred             eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCC
Q psy13076         41 RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN  120 (423)
Q Consensus        41 ~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  120 (423)
                      ...+||.++|.++++++  ++|+|||.|++||+||.++.........     ......+..+                  
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~-----~~~~~~~~~~------------------   62 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDK-----SYSHFVHKSG------------------   62 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGG-----EEEEECCTTC------------------
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccce-----eEeeeeccCC------------------
Confidence            46789999999999875  6899999999999999876432111100     0000000000                  


Q ss_pred             CcccccccCCcceEEEEEECC-CCCEEEEEccCCcEEEEEcCCCceeE---EeeecCCCCCeeEEEECCCCCeEEEEEcC
Q psy13076        121 PAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHIL---KNEFHPIGGPIKDIAWSPDNQRMVVVGEG  196 (423)
Q Consensus       121 ~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~v~~v~~s~~~~~~~~~~~~  196 (423)
                             ..|......+...+ ++.++++++.|+.|++|++.......   ........                     
T Consensus        63 -------~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~---------------------  114 (393)
T d1sq9a_          63 -------LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD---------------------  114 (393)
T ss_dssp             -------EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC---------------------
T ss_pred             -------ceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceee---------------------
Confidence                   00111222222222 34578899999999999975432111   00000000                     


Q ss_pred             CceeeEEEeecCCcceecccCCCcceeEEEEecCC----CeeEEEEeCCCeEEEEcCCCce------------------e
Q psy13076        197 RERFGHVFMSETGTSVGEISGQSKPINSCDFKPSR----PFRIITGSEDNTIAVFEGPPFK------------------F  254 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~s~s~d~~i~~~~~~~~~------------------~  254 (423)
                                        ...+...+..+.+.+..    ...+++++.|+.+.+|+.....                  .
T Consensus       115 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  176 (393)
T d1sq9a_         115 ------------------SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT  176 (393)
T ss_dssp             ------------------TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred             ------------------eccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccc
Confidence                              00011112222333221    1247788899999999742110                  0


Q ss_pred             eeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccc----ccccCCCeEEEEECCCCCeEEEEeCCCc-
Q psy13076        255 KMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELG----NPAHKGGVYAVAWKPDGTQLLTASGDKT-  329 (423)
Q Consensus       255 ~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~----~~~~~~~i~~l~~~~~~~~l~s~s~d~~-  329 (423)
                      ......+...+.+++|+|+| +|++|+.||.|++||+.+++.+..+.    ..+|...|.+++|+|+|++|++|+.|++ 
T Consensus       177 ~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~  255 (393)
T d1sq9a_         177 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF  255 (393)
T ss_dssp             ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTE
T ss_pred             eecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCc
Confidence            11122345668899999998 89999999999999999887665442    2358899999999999999999999985 


Q ss_pred             --EEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeE
Q psy13076        330 --CKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV  407 (423)
Q Consensus       330 --i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l  407 (423)
                        |++||+++++.+..+.....                               .......+.||.+.|++++|+||+++|
T Consensus       256 ~~i~lwd~~~g~~~~~l~~~~~-------------------------------~~~~~~~~~gH~~~V~~l~fspd~~~l  304 (393)
T d1sq9a_         256 GCITLYETEFGERIGSLSVPTH-------------------------------SSQASLGEFAHSSWVMSLSFNDSGETL  304 (393)
T ss_dssp             EEEEEEETTTCCEEEEECBC---------------------------------------CCBSBSSCEEEEEECSSSSEE
T ss_pred             ceeeecccccceeeeeeccccc-------------------------------cccceeeeecccCceeeeccCCCCCee
Confidence              99999999887765432110                               112234567999999999999999999


Q ss_pred             EEecCCCcEEEeeCCC
Q psy13076        408 FTGSHDGFITRWNAKT  423 (423)
Q Consensus       408 ~s~s~D~~i~~W~~~~  423 (423)
                      +|||.|++|++||+++
T Consensus       305 ~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             EEEETTSEEEEEETTT
T ss_pred             EEECCCCEEEEEECCC
Confidence            9999999999999864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=4.9e-32  Score=247.90  Aligned_cols=321  Identities=14%  Similarity=0.077  Sum_probs=222.4

Q ss_pred             EEEE-eCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCC--ceEEeecCCcceeecccC
Q psy13076         11 SCLW-QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG--FITRWNAKTEYIFATLPR   87 (423)
Q Consensus        11 ~~~~-~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~--~i~vW~~~~~~~~~~~~~   87 (423)
                      =++| ||+++|+++ .|.|++||+.. .. +..+ +|...|.+++|+||+++|++++.|.  .|++||.++++..     
T Consensus         9 ~fSP~dG~~~a~~~-~g~v~v~d~~~-~~-~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-----   79 (360)
T d1k32a3           9 DFSPLDGDLIAFVS-RGQAFIQDVSG-TY-VLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-----   79 (360)
T ss_dssp             EEEECGGGCEEEEE-TTEEEEECTTS-SB-EEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-----
T ss_pred             cccCCCCCEEEEEE-CCeEEEEECCC-Cc-EEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-----
Confidence            3789 999999876 57999999864 33 3333 7999999999999999988876654  7999999876432     


Q ss_pred             CCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeE
Q psy13076         88 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL  167 (423)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~  167 (423)
                                                            .+..|...|..++|+|+|+++++++.++.+++|+..+.+...
T Consensus        80 --------------------------------------~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  121 (360)
T d1k32a3          80 --------------------------------------KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV  121 (360)
T ss_dssp             --------------------------------------ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             --------------------------------------EeeCCCceEEeeeecccccccceeccccccccccccccceee
Confidence                                                  134577889999999999999999999999999998776543


Q ss_pred             EeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE
Q psy13076        168 KNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF  247 (423)
Q Consensus       168 ~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~  247 (423)
                      .  ...+...+.+++|+|+|++++.......                                   ..+.+..++.+++|
T Consensus       122 ~--~~~~~~~~~~~~~spdg~~la~~~~~~~-----------------------------------~~~~~~~~~~~~v~  164 (360)
T d1k32a3         122 I--ERSREAMITDFTISDNSRFIAYGFPLKH-----------------------------------GETDGYVMQAIHVY  164 (360)
T ss_dssp             E--EECSSSCCCCEEECTTSCEEEEEEEECS-----------------------------------STTCSCCEEEEEEE
T ss_pred             e--eecccccccchhhccceeeeeeeccccc-----------------------------------cceeeccccceeee
Confidence            3  3334567889999999999876542211                                   01224456678888


Q ss_pred             cCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecc-----cccccCCCeEEEEECCCCCeEE
Q psy13076        248 EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL-----GNPAHKGGVYAVAWKPDGTQLL  322 (423)
Q Consensus       248 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~~~i~~l~~~~~~~~l~  322 (423)
                      +....+.. ....+...+..++|+|+|++|++++.|+.+.+|+..........     ....|......+.|+|++..++
T Consensus       165 d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  243 (360)
T d1k32a3         165 DMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE  243 (360)
T ss_dssp             ETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCC
T ss_pred             ccccCcee-eecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCccc
Confidence            87765443 33345566788999999999999999999999997654332110     0112344445566777777776


Q ss_pred             EEeCCCc-----EEEEecCCcceeeeeeeCceeEeeEEEEEe---cCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCc
Q psy13076        323 TASGDKT-----CKLWDIETKSAVSEFLMGNQVEDQQVSCLW---QGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKP  394 (423)
Q Consensus       323 s~s~d~~-----i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~---~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~  394 (423)
                      ++..+..     +..++...+... .+... +.....+....   .+.+++.++.++.+++||..+.+     ...|.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~~~~~  316 (360)
T d1k32a3         244 AGEYDLNDMYKRSSPINVDPGDYR-MIIPL-ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-----VTEVKNN  316 (360)
T ss_dssp             CCCCCCTTGGGGCEECSCCCBCEE-EEEEC-SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-----EEEEEEE
T ss_pred             ccceeecccccceeecccCcCcee-Eeeec-CCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe-----EEEecCC
Confidence            6554432     333333333321 11111 11111111111   22345667778899999987743     2345567


Q ss_pred             eeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        395 ITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       395 v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      |++++||||+++|++++.||.|++||+++
T Consensus       317 v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~  345 (360)
T d1k32a3         317 LTDLRLSADRKTVMVRKDDGKIYTFPLEK  345 (360)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEESSC
T ss_pred             cCEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            99999999999999999999999999863

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-30  Score=241.33  Aligned_cols=324  Identities=17%  Similarity=0.189  Sum_probs=207.0

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCC-----ceeecccccCceeEEEE------eC-CCCeEEEecCCCceEEeecC
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPST-----PIRVIKGHNKPITALAL------SP-DRGTVFTGSHDGFITRWNAK   77 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~-----~~~~~~gh~~~V~~l~~------~~-~~~~l~sg~~D~~i~vW~~~   77 (423)
                      .++...++++++||.|+.|++||..+...     .......|...+..+..      ++ +..++++++.||+|++|++.
T Consensus        18 ~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~   97 (393)
T d1sq9a_          18 FSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRIT   97 (393)
T ss_dssp             EEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEE
T ss_pred             EEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEcc
Confidence            34445789999999999999999754321     11122234444333322      22 23568899999999999876


Q ss_pred             CcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCC-----CCEEEEEccC
Q psy13076         78 TEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-----GFYIASGDIS  152 (423)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~-----~~~l~s~~~d  152 (423)
                      .......+.                            -....  ..  ....+...+..+++.++     +.++++++.|
T Consensus        98 ~~~~~~~~~----------------------------~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  145 (393)
T d1sq9a_          98 REDETKKVI----------------------------FEKLD--LL--DSDMKKHSFWALKWGASNDRLLSHRLVATDVK  145 (393)
T ss_dssp             ECTTTCCEE----------------------------EEEEC--CS--CTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred             CCCceeeee----------------------------ccccc--ee--eeccCCCceEEEEEecCCCcccccEEEEEcCC
Confidence            432111000                            00000  00  01223445666666654     5789999999


Q ss_pred             CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCC
Q psy13076        153 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRP  232 (423)
Q Consensus       153 ~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  232 (423)
                      +++++|++........ ...........+.                           ........+...+.+++|+|++ 
T Consensus       146 g~i~vw~~~~~~~~~~-~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         146 GTTYIWKFHPFADESN-SLTLNWSPTLELQ---------------------------GTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             SCEEEEEEESSSSHHH-HTTTCCCCEEEEE---------------------------EEECCSSSSCCCCCEEEECTTS-
T ss_pred             CcEEEEEeecCCcccc-eeeeeeccceecc---------------------------cceecccCCCCcEEEEEECCCC-
Confidence            9999999754321100 0000000000000                           0011122344557888999886 


Q ss_pred             eeEEEEeCCCeEEEEcCCCceeee------eccccccCeEEEEECCCCCEEEEEEecC---eEEEEECCCccceecccc-
Q psy13076        233 FRIITGSEDNTIAVFEGPPFKFKM------TKQEHSRFVQAVRYSPSGSHFASAGFDG---KVFLYDGASADLVSELGN-  302 (423)
Q Consensus       233 ~~~~s~s~d~~i~~~~~~~~~~~~------~~~~~~~~i~~l~~s~~g~~l~s~s~dg---~i~vwd~~~~~~~~~~~~-  302 (423)
                       .+++|+.|++|++||....+...      .+..|...|++++|+|+|++|++|+.|+   .|++||.++++.+..+.. 
T Consensus       197 -~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~  275 (393)
T d1sq9a_         197 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  275 (393)
T ss_dssp             -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             -EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence             58999999999999987655433      3456889999999999999999999997   489999998887666532 


Q ss_pred             ----------cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCce-eEe--eEEEEEecCcEEEEEeC
Q psy13076        303 ----------PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQ-VED--QQVSCLWQGDYLLTVSL  369 (423)
Q Consensus       303 ----------~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~-~~~--~~~~~~~~g~~l~~~~~  369 (423)
                                .+|.+.|++++|+|++++|+|+|.|++|++||+++++++.++..+.. +..  ..+.+.++|+.+++   
T Consensus       276 ~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~---  352 (393)
T d1sq9a_         276 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE---  352 (393)
T ss_dssp             --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS---
T ss_pred             cccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEE---
Confidence                      36999999999999999999999999999999999999988754321 111  11223334443322   


Q ss_pred             CCcEEEEecCCCCCceEEeccCCCceeEEEecC----------CCCeEEEecCCCcEEEeeC
Q psy13076        370 SGFISYLDVNNPSTPIRVIKGHNKPITALALSP----------DRGTVFTGSHDGFITRWNA  421 (423)
Q Consensus       370 ~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp----------~~~~l~s~s~D~~i~~W~~  421 (423)
                                             ..++++.|.+          ....|++++.|+.||+|..
T Consensus       353 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         353 -----------------------PGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             -----------------------CCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             -----------------------cccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence                                   2233344333          2356899999999999964

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-29  Score=228.33  Aligned_cols=310  Identities=12%  Similarity=0.113  Sum_probs=209.2

Q ss_pred             ceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEec
Q psy13076         39 PIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNI  118 (423)
Q Consensus        39 ~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  118 (423)
                      .+.++++|++.|++|+|+|++++|||||.||+||+||++++.....+                                 
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~---------------------------------   49 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL---------------------------------   49 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE---------------------------------
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE---------------------------------
Confidence            46678999999999999999999999999999999998753211100                                 


Q ss_pred             CCCcccccccCCcceEEEEEECCC-CCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        119 ENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       119 ~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                            ....+|..+|.+++|+|+ +.++++|+.|++|++|+............. .........+.++...+++.+...
T Consensus        50 ------~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  122 (342)
T d1yfqa_          50 ------LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN-EANLGICRICKYGDDKLIAASWDG  122 (342)
T ss_dssp             ------EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSC-CCCSCEEEEEEETTTEEEEEETTS
T ss_pred             ------EEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccc-cccccccccccccccccccccccc
Confidence                  012358899999999986 568999999999999999876554332222 222334455566667776665443


Q ss_pred             ceeeEEEeecCCcce----ecccCC--CcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee---eeccccccCeEEE
Q psy13076        198 ERFGHVFMSETGTSV----GEISGQ--SKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK---MTKQEHSRFVQAV  268 (423)
Q Consensus       198 ~~~~~~~~~~~~~~~----~~~~~~--~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~---~~~~~~~~~i~~l  268 (423)
                        ...+|+.......    .....+  ........+.+.... +++++.|+.+++|+.......   .........+.+.
T Consensus       123 --~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (342)
T d1yfqa_         123 --LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV  199 (342)
T ss_dssp             --EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE
T ss_pred             --ccceeeccccccceeeecccccccccceeeeeeeeccCCc-eeeecCCCcEEEEecccCcccceeeeecccccceeee
Confidence              3456654332221    111111  122334455565554 888999999999996543211   1122233334444


Q ss_pred             EE-CCCCCEEEEEEecCeEEEEECCCccceec-------------ccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEe
Q psy13076        269 RY-SPSGSHFASAGFDGKVFLYDGASADLVSE-------------LGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD  334 (423)
Q Consensus       269 ~~-s~~g~~l~s~s~dg~i~vwd~~~~~~~~~-------------~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd  334 (423)
                      .+ .+++..+++++.||.+.+|+.........             .....|...+.+++|+|++++|+||+.||+|++||
T Consensus       200 ~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence            44 45677999999999999998754322111             11134667789999999999999999999999999


Q ss_pred             cCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEE
Q psy13076        335 IETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITAL  398 (423)
Q Consensus       335 ~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i  398 (423)
                      +++++.+.++...+..  ...++.++|+.+++++.++.++.|.....     .+..|...|..+
T Consensus       280 ~~~~~~l~~~~~~~~~--~~~~~s~~~~~l~~a~sdd~~~~~~~~~~-----~~~~~~~~i~~~  336 (342)
T d1yfqa_         280 LQTRKKIKNFAKFNED--SVVKIACSDNILCLATSDDTFKTNAAIDQ-----TIELNASSIYII  336 (342)
T ss_dssp             TTTTEEEEECCCCSSS--EEEEEEECSSEEEEEEECTHHHHCSSSCT-----TSCCCCCEEEEE
T ss_pred             CCCCcEEEEecCCCCC--EEEEEEeCCCEEEEEEcCCcEEEeeeeCC-----CccCCCCeEEEE
Confidence            9999988877544332  24566789999999998888777755332     234455556544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-29  Score=223.58  Aligned_cols=250  Identities=20%  Similarity=0.278  Sum_probs=187.5

Q ss_pred             EEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEee
Q psy13076         19 LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG   98 (423)
Q Consensus        19 ~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~   98 (423)
                      |++|+.||.|++||+.+      ..++|...|.+++++++ ..+++++.|+++++|+..+.+.        ...+..+..
T Consensus        24 l~sgs~Dg~v~~Wd~~~------~~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~~--------~~~~~~~~~   88 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEF--------GSQPKVASA   88 (287)
T ss_dssp             TEEEETTSCEEETTTTE------EECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEEC--------SSCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCC------CCCCCCCCEEEEEecCC-CeEEEEeecccccccccccccc--------ccceeeeee
Confidence            99999999999999754      45789999999999875 4679999999999999865321        223445667


Q ss_pred             CCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCC-cEEEEEcCCCceeEEeeecCCCCC
Q psy13076         99 DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG-KVRIWDTVNKEHILKNEFHPIGGP  177 (423)
Q Consensus        99 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~  177 (423)
                      .+++..++......+.+|+..+++....+..+. .+  ..++|++..+++++.|+ .+++|++...+.... ....+..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~  164 (287)
T d1pgua2          89 NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS-PG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD-LKTPLRAK  164 (287)
T ss_dssp             CSSSEEEEEETTSEEEEEETTTCCEEEEEECSS-CE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEE-CSSCCSSC
T ss_pred             ccCCceEEEeecccceeeeccceeeeeeccccc-ee--eeeeccCcceeeeccccceeeeeeccccceeee-eeeccCCc
Confidence            788888888888889999988887777665443 22  35677788888877764 799999854332211 11122344


Q ss_pred             eeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee-
Q psy13076        178 IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM-  256 (423)
Q Consensus       178 v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~-  256 (423)
                      +.+++|+|++++                                             +++++.|+.|++|+........ 
T Consensus       165 v~~~~~s~~~~~---------------------------------------------l~~g~~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         165 PSYISISPSETY---------------------------------------------IAAGDVMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             EEEEEECTTSSE---------------------------------------------EEEEETTSCEEEEETTTTEEEEC
T ss_pred             eeEEEeccCccc---------------------------------------------cccccccccccceeecccccccc
Confidence            555555555443                                             6677888889999877665433 


Q ss_pred             eccccccCeEEEEECCC----------CCEEEEEEecCeEEEEECCCcc-ceecccccccCCCeEEEEECCCCCeEEEEe
Q psy13076        257 TKQEHSRFVQAVRYSPS----------GSHFASAGFDGKVFLYDGASAD-LVSELGNPAHKGGVYAVAWKPDGTQLLTAS  325 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~----------g~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s  325 (423)
                      ....|...|.+++|+|.          +.++++|+.|+.|++||.+++. .+..+  .+|...|++++|+|++ .|++++
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~--~~h~~~V~~v~~~~~~-~l~s~g  276 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL--NAHKDGVNNLLWETPS-TLVSSG  276 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET--TSSTTCEEEEEEEETT-EEEEEE
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe--CCCCCCeEEEEECCCC-EEEEEE
Confidence            35678888999999874          5689999999999999987644 44433  4799999999999986 588999


Q ss_pred             CCCcEEEEec
Q psy13076        326 GDKTCKLWDI  335 (423)
Q Consensus       326 ~d~~i~iwd~  335 (423)
                      .|++|++||+
T Consensus       277 ~D~~v~iW~i  286 (287)
T d1pgua2         277 ADACIKRWNV  286 (287)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=1.1e-28  Score=231.73  Aligned_cols=331  Identities=13%  Similarity=0.092  Sum_probs=224.1

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceE
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIV   95 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~   95 (423)
                      +-++++++.||.|++||+.+ .+.+.++..|. .+..++|+|||++|++++.|++|++||+++++......         
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t-~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~---------  100 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDS-KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE---------  100 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTT-CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE---------
T ss_pred             eEEEEEEcCCCEEEEEECCC-CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE---------
Confidence            44668888999999999987 57788998875 58999999999999999999999999998865322110         


Q ss_pred             EeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEE-EccCCcEEEEEcCCCceeEEeeec--
Q psy13076         96 LGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS-GDISGKVRIWDTVNKEHILKNEFH--  172 (423)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~--  172 (423)
                                                  .....+|...+.+..|+|||+++++ +..++++++||....+.......+  
T Consensus       101 ----------------------------i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~  152 (426)
T d1hzua2         101 ----------------------------IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM  152 (426)
T ss_dssp             ----------------------------EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred             ----------------------------EeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC
Confidence                                        0122356677778889999998755 457899999999887654332211  


Q ss_pred             -------CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc-eecccCCCcceeEEEEecCCCeeEEEEeCCCeE
Q psy13076        173 -------PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS-VGEISGQSKPINSCDFKPSRPFRIITGSEDNTI  244 (423)
Q Consensus       173 -------~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i  244 (423)
                             ...+....+.+++++..++....+.... ..+....... ......+...+..+.++|++.+.+++...++.+
T Consensus       153 ~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~  231 (426)
T d1hzua2         153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV-LLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKV  231 (426)
T ss_dssp             CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE-EEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEE
T ss_pred             CccceeecCCCceeEEEECCCCCEEEEecCCCCeE-EEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccce
Confidence                   1223455677788887777665544332 2222222221 122335566788999999999878888888899


Q ss_pred             EEEcCCCceeeeecc--ccccCeEEEEECCCCC-EE--EEEEecCeEEEEECCCc-------cceecccccccCCCeEEE
Q psy13076        245 AVFEGPPFKFKMTKQ--EHSRFVQAVRYSPSGS-HF--ASAGFDGKVFLYDGASA-------DLVSELGNPAHKGGVYAV  312 (423)
Q Consensus       245 ~~~~~~~~~~~~~~~--~~~~~i~~l~~s~~g~-~l--~s~s~dg~i~vwd~~~~-------~~~~~~~~~~~~~~i~~l  312 (423)
                      .+++....+......  ........+.+.+.+. ..  ++.+.|+.+.+|+....       +....+  .+|...+..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l--~g~~~~v~~v  309 (426)
T d1hzua2         232 AVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL--QGQGGGSLFI  309 (426)
T ss_dssp             EEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEE--ECSSSCCCCE
T ss_pred             eeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEE--ecCCCceeEE
Confidence            999877766543332  1222222333333332 22  22335777888876543       333444  3688889999


Q ss_pred             EECCCCCeEEE-------EeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCce
Q psy13076        313 AWKPDGTQLLT-------ASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI  385 (423)
Q Consensus       313 ~~~~~~~~l~s-------~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~  385 (423)
                      +|+|++++|++       ++.|++|+|||+++++...++....                                  . .
T Consensus       310 ~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~----------------------------------~-~  354 (426)
T d1hzua2         310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA----------------------------------E-W  354 (426)
T ss_dssp             ECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH----------------------------------H-H
T ss_pred             EcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc----------------------------------h-h
Confidence            99999999994       5668899999999887654432100                                  0 0


Q ss_pred             EEeccCCCceeEEEecCCCCeE-EEe----cCCCcEEEeeCCC
Q psy13076        386 RVIKGHNKPITALALSPDRGTV-FTG----SHDGFITRWNAKT  423 (423)
Q Consensus       386 ~~~~~h~~~v~~i~~sp~~~~l-~s~----s~D~~i~~W~~~~  423 (423)
                      ..+..|.+.|..++|||||++| +++    +.|+.|++||.+|
T Consensus       355 ~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         355 ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             HCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             cccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence            1233566789999999999976 443    4688999999876

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.1e-29  Score=226.26  Aligned_cols=281  Identities=13%  Similarity=0.086  Sum_probs=191.0

Q ss_pred             eeEEEEeCCEEEEEeccceEEEEeccCCCCce--eecccccCceeEEEEeCCC-CeEEEecCCCceEEeecCCcceeecc
Q psy13076          9 QVSCLWQGDYLLTVSLSGFISYLDVNNPSTPI--RVIKGHNKPITALALSPDR-GTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~--~~~~gh~~~V~~l~~~~~~-~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      .|+++|||++||+||.||.|++||++.+....  ....+|.++|.+++|+|++ .+|+||+.|++|++|+..........
T Consensus        16 ~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~   95 (342)
T d1yfqa_          16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL   95 (342)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC
T ss_pred             EEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccc
Confidence            45666799999999999999999997654422  2334799999999999865 57999999999999999877655544


Q ss_pred             cCCCCCCceEEeeCCCCCeEE-EecCCeEEEEecCCCccccc----ccCC--cceEEEEEECCCCCEEEEEccCCcEEEE
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFL-YTNGNSVIIRNIENPAISDI----YTEH--SCAVNVAKYSPSGFYIASGDISGKVRIW  158 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~----~~~h--~~~i~~~~~sp~~~~l~s~~~d~~i~vw  158 (423)
                      ..............+....++ .+.+..+.+|++..+.....    ...+  ........+.+++..+++++.|+.|++|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  175 (342)
T d1yfqa_          96 TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF  175 (342)
T ss_dssp             BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEE
Confidence            433333333333444444444 45678899999764433222    2222  2233445667788899999999999999


Q ss_pred             EcCCCceeEEeee-cCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEE
Q psy13076        159 DTVNKEHILKNEF-HPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIIT  237 (423)
Q Consensus       159 d~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s  237 (423)
                      |+........... ......+.+.                                            .+.+.....+++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~  211 (342)
T d1yfqa_         176 RLPLCEDDNGTIEESGLKYQIRDV--------------------------------------------ALLPKEQEGYAC  211 (342)
T ss_dssp             ESSCCTTCCCEEEECSCSSCEEEE--------------------------------------------EECSGGGCEEEE
T ss_pred             ecccCcccceeeeecccccceeee--------------------------------------------EeecCCCCEEEe
Confidence            9876543211111 1111112222                                            222222234667


Q ss_pred             EeCCCeEEEEcCCCce---------------eeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccc
Q psy13076        238 GSEDNTIAVFEGPPFK---------------FKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGN  302 (423)
Q Consensus       238 ~s~d~~i~~~~~~~~~---------------~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~  302 (423)
                      ++.|+.+.+|+.....               .......|...+++++|+|++++|++|+.||.|++||..+++.+.++..
T Consensus       212 ~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC
Confidence            7777777777532111               0111234566789999999999999999999999999999988877642


Q ss_pred             cccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        303 PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       303 ~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                         ......++|+|++++|++++.|+++++|...
T Consensus       292 ---~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         292 ---FNEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ---CSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             ---CCCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence               2345568889999999999999998888653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=1.1e-28  Score=231.54  Aligned_cols=352  Identities=12%  Similarity=0.032  Sum_probs=248.0

Q ss_pred             EeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCc
Q psy13076         14 WQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQP   93 (423)
Q Consensus        14 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~   93 (423)
                      .++-++++.+.||.|.+||..+ .+.+..+..|. .+..++|+|||++|++++.|++|++||+.+++.....        
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t-~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~--------   99 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGST-YEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--------   99 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTT-CCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--------
T ss_pred             CCcEEEEEEcCCCEEEEEECCC-CcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE--------
Confidence            3445569999999999999976 66788888774 6899999999999999999999999999875321100        


Q ss_pred             eEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEE-EEEccCCcEEEEEcCCCceeEEeeec
Q psy13076         94 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFH  172 (423)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~  172 (423)
                                                   ......+|.+.+.+..|+|||+++ +++..+++|++||.++.+.......+
T Consensus       100 -----------------------------~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~  150 (432)
T d1qksa2         100 -----------------------------EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  150 (432)
T ss_dssp             -----------------------------EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             -----------------------------EEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC
Confidence                                         001123455667777899999986 67888999999999887765432211


Q ss_pred             ---------CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceeccc-CCCcceeEEEEecCCCeeEEEEeCCC
Q psy13076        173 ---------PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEIS-GQSKPINSCDFKPSRPFRIITGSEDN  242 (423)
Q Consensus       173 ---------~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~  242 (423)
                               ........+.++|+++.+++....... ..++.....+...... .....+..+.|+|++.+.++++..++
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~-i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~  229 (432)
T d1qksa2         151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK-ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN  229 (432)
T ss_dssp             EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE-EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT
T ss_pred             CccccceeccCCCceeEEEECCCCCEEEEEEccCCe-EEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccc
Confidence                     123456678999999988776655433 2344444433322211 23456788999999998777777788


Q ss_pred             eEEEEcCCCceeeeecc-----ccccCeEEEEECCCCCEEEEEE-ecCeEEEEECCCccceecccccccCCCeEEEEECC
Q psy13076        243 TIAVFEGPPFKFKMTKQ-----EHSRFVQAVRYSPSGSHFASAG-FDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKP  316 (423)
Q Consensus       243 ~i~~~~~~~~~~~~~~~-----~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~  316 (423)
                      .+.+++....+......     .+........+.+.+...++.. .++.|.+|+..+...      ..|...+....++|
T Consensus       230 ~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~------~~~~~~v~~~~~~~  303 (432)
T d1qksa2         230 KLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH------PDNAWKILDSFPAL  303 (432)
T ss_dssp             EEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC------TTTBTSEEEEEECS
T ss_pred             eEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc------cccccEEEEEEEcC
Confidence            99999977665443221     2334444555555565555544 378899998654321      23566788999999


Q ss_pred             CCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCcee
Q psy13076        317 DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPIT  396 (423)
Q Consensus       317 ~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~  396 (423)
                      ++..+++++.+.+.++|+..+...-.       .....+. .|+++.+++++.++.+++|++.+..    .+..|.+.|.
T Consensus       304 ~g~~~~~~s~p~~~~lw~~~~~~~~~-------~~~~sv~-vpDg~~la~~s~d~~~k~w~~~~~~----~l~~~~~~v~  371 (432)
T d1qksa2         304 GGGSLFIKTHPNSQYLYVDATLNPEA-------EISGSVA-VFDIKAMTGDGSDPEFKTLPIAEWA----GITEGQPRVV  371 (432)
T ss_dssp             CSCCCCEECCTTCSEEEEECTTCSSH-------HHHTCEE-EEEGGGCCCSSSCCCEEEECHHHHH----TCCSSCCEEE
T ss_pred             CCCeEEEEecCCccceeecccCCCCC-------CeeeEEE-EEechhhcccccCCceEeccccccc----ccCCCCCcEE
Confidence            99999999999999999876543211       1111233 3799999999999999999985532    2346778899


Q ss_pred             EEEecCCCCeEEEec-----CCCcEEEeeCCC
Q psy13076        397 ALALSPDRGTVFTGS-----HDGFITRWNAKT  423 (423)
Q Consensus       397 ~i~~sp~~~~l~s~s-----~D~~i~~W~~~~  423 (423)
                      .++|||||++|+.+.     .|+.|++||.+|
T Consensus       372 ~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T  403 (432)
T d1qksa2         372 QGEFNKDGTEVWFSVWNGKDQESALVVVDDKT  403 (432)
T ss_dssp             EEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             EeEECCCCCEEEEEEecCCCCCCcEEEEECCC
Confidence            999999999874332     478899999875

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.8e-24  Score=187.73  Aligned_cols=240  Identities=21%  Similarity=0.319  Sum_probs=170.2

Q ss_pred             CceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         38 TPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        38 ~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      +.+..+.+|.+.|+|++|  ++++||||+.||+|++||+++++++.                                  
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~----------------------------------   49 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR----------------------------------   49 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE----------------------------------
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE----------------------------------
Confidence            345566788899998765  78899999999999999998765432                                  


Q ss_pred             cCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCC
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGR  197 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~  197 (423)
                              ++.+|...|+++.|  ++++|++|+.|++|++|++............    ......               
T Consensus        50 --------~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~----~~~~~~---------------  100 (293)
T d1p22a2          50 --------ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHH----CEAVLH---------------  100 (293)
T ss_dssp             --------EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCC----CSCEEE---------------
T ss_pred             --------EEecCCCCEeeeec--ccceeeccccccccccccccccccccccccc----cccccc---------------
Confidence                    45679999998876  6789999999999999999776543221111    000001               


Q ss_pred             ceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce---eeeeccccccCeEEEEECCCC
Q psy13076        198 ERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK---FKMTKQEHSRFVQAVRYSPSG  274 (423)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~---~~~~~~~~~~~i~~l~~s~~g  274 (423)
                                                   ..+... .++++..++.+.+|+.....   .......|...+..+.+.+  
T Consensus       101 -----------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  148 (293)
T d1p22a2         101 -----------------------------LRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--  148 (293)
T ss_dssp             -----------------------------EECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--
T ss_pred             -----------------------------cccccc-ceeecccccceeEeeccccccccccccccccccccccceecc--
Confidence                                         111111 36677888888888865332   3334556677777766654  


Q ss_pred             CEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeE
Q psy13076        275 SHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQ  354 (423)
Q Consensus       275 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~  354 (423)
                      .++++++.|+.|++||.++++.+..+.  ++...+..+.++  +.+|++++.|++|++||+++.+.+..+......   .
T Consensus       149 ~~~~~~s~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---v  221 (293)
T d1p22a2         149 KYIVSASGDRTIKVWNTSTCEFVRTLN--GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL---V  221 (293)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSC---E
T ss_pred             cccccccCCCceeeecCCCCcEEEEEc--ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeeccccee---e
Confidence            578899999999999999998877764  466777777665  568999999999999999988776655322211   1


Q ss_pred             EEEEecCcEEEEEeCCCcEEEEecCCC
Q psy13076        355 VSCLWQGDYLLTVSLSGFISYLDVNNP  381 (423)
Q Consensus       355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~  381 (423)
                      ....+++.+|++++.+|.|++||+...
T Consensus       222 ~~~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         222 RCIRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             EEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             eeccccceEEEEEcCCCEEEEEECCCC
Confidence            223456777778888888888877543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=6.1e-25  Score=205.81  Aligned_cols=319  Identities=9%  Similarity=-0.007  Sum_probs=218.5

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCC----ceeecccccCceeEEEEeCCCCeE-EEecCCCceEEeecCCccee
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPST----PIRVIKGHNKPITALALSPDRGTV-FTGSHDGFITRWNAKTEYIF   82 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~----~~~~~~gh~~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~   82 (423)
                      +.++++|||++++++++||.|++||+.+...    .+.+..+|.+.+.+.+|+|||++| ++++.|++|++||.+++++.
T Consensus        65 ~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~  144 (432)
T d1qksa2          65 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK  144 (432)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred             eEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccce
Confidence            5788999999999999999999999976432    123345788888899999999975 78889999999999998876


Q ss_pred             ecccCC----------CCCCceEEeeCCCCCeEEEec--CCeEEEEecCCCccccccc-CCcceEEEEEECCCCCEEEEE
Q psy13076         83 ATLPRT----------QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASG  149 (423)
Q Consensus        83 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~-~h~~~i~~~~~sp~~~~l~s~  149 (423)
                      ..+...          ..+....+.++++|..++++.  .+.+.+++..+++...+.. .+...+..+.|+|+|++++++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va  224 (432)
T d1qksa2         145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA  224 (432)
T ss_dssp             EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred             eeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEe
Confidence            654321          223445567888888776653  5688889888766544433 344567899999999988776


Q ss_pred             cc-CCcEEEEEcCCCceeEEeeec---CCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEE
Q psy13076        150 DI-SGKVRIWDTVNKEHILKNEFH---PIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSC  225 (423)
Q Consensus       150 ~~-d~~i~vwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  225 (423)
                      +. +..+.++|..+.+........   .+........+.+.+..... ....+....++....    .....+...+...
T Consensus       225 ~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~lg~~~v~~~~~~~----~~~~~~~~~v~~~  299 (432)
T d1qksa2         225 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT-SHMGDDSVALIGTDP----EGHPDNAWKILDS  299 (432)
T ss_dssp             EGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE-EBSSSSEEEEEECCT----TTCTTTBTSEEEE
T ss_pred             ccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecc-cccCCceEEeccccc----ccccccccEEEEE
Confidence            65 568888998776654332221   12223334444444443333 222222222332221    1233455567777


Q ss_pred             EEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccccc
Q psy13076        226 DFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH  305 (423)
Q Consensus       226 ~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  305 (423)
                      .+.|++.. +++++.+++.++|.....      ..+.....++++ ||++.+++++.|+.+++|+..++..   +.  .|
T Consensus       300 ~~~~~g~~-~~~~s~p~~~~lw~~~~~------~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~--~~  366 (432)
T d1qksa2         300 FPALGGGS-LFIKTHPNSQYLYVDATL------NPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---IT--EG  366 (432)
T ss_dssp             EECSCSCC-CCEECCTTCSEEEEECTT------CSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CC--SS
T ss_pred             EEcCCCCe-EEEEecCCccceeecccC------CCCCCeeeEEEE-EechhhcccccCCceEecccccccc---cC--CC
Confidence            78887654 677888889999964322      223333344555 9999999999999999999755432   22  35


Q ss_pred             CCCeEEEEECCCCCeEEEEe-----CCCcEEEEecCCcceeeee
Q psy13076        306 KGGVYAVAWKPDGTQLLTAS-----GDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       306 ~~~i~~l~~~~~~~~l~s~s-----~d~~i~iwd~~~~~~i~~~  344 (423)
                      ...+..++|+|||++++.+.     .++.|+|||.++.++....
T Consensus       367 ~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i  410 (432)
T d1qksa2         367 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI  410 (432)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred             CCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEe
Confidence            66788999999999886554     4688999999999876544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=2.3e-22  Score=178.23  Aligned_cols=274  Identities=19%  Similarity=0.218  Sum_probs=200.5

Q ss_pred             EEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeE-EEecCCCceEEeecCCcceeecccCCCCCCceEEee
Q psy13076         20 LTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTV-FTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGG   98 (423)
Q Consensus        20 ~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~   98 (423)
                      ++.+.|+.|.+||+.+ .+.+.++... +.+..++|+|+|++| ++++.+++|++||+++++.+..+.            
T Consensus         6 V~~~~~~~v~v~D~~t-~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~------------   71 (301)
T d1l0qa2           6 IANSESDNISVIDVTS-NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP------------   71 (301)
T ss_dssp             EEETTTTEEEEEETTT-TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE------------
T ss_pred             EEECCCCEEEEEECCC-CeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee------------
Confidence            3567899999999976 4566667644 456799999999976 578889999999999876554331            


Q ss_pred             CCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEE-EEccCCcEEEEEcCCCceeEEeeecCCCCC
Q psy13076         99 DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHPIGGP  177 (423)
Q Consensus        99 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  177 (423)
                                                    .|. .+..+.|++++.+++ ++..++.+++|+..+.+.......   ...
T Consensus        72 ------------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  117 (301)
T d1l0qa2          72 ------------------------------AGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT---GKS  117 (301)
T ss_dssp             ------------------------------CSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSS
T ss_pred             ------------------------------ccc-cccccccccccccccccccccceeeecccccceeeeeccc---ccc
Confidence                                          122 356788999988665 566678999999987765443332   245


Q ss_pred             eeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee
Q psy13076        178 IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT  257 (423)
Q Consensus       178 v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~  257 (423)
                      ...++|+|++..+++...... ...++...+......+..+ ..+..+.++|++...+++...++.+.+++.........
T Consensus       118 ~~~~~~~~dg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (301)
T d1l0qa2         118 PLGLALSPDGKKLYVTNNGDK-TVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT  195 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTT-EEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceEEEeecCCCeeeeeecccc-ceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeec
Confidence            688999999999887765443 3445665555555555443 34678889999887666666667788887665554443


Q ss_pred             ccccccCeEEEEECCCCCEEEEEEec---CeEEEEECCCccceecccccccCCCeEEEEECCCCCeE-EEEeCCCcEEEE
Q psy13076        258 KQEHSRFVQAVRYSPSGSHFASAGFD---GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQL-LTASGDKTCKLW  333 (423)
Q Consensus       258 ~~~~~~~i~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~s~s~d~~i~iw  333 (423)
                      ... ...+..++++++|..++.+..+   +.|.+||..+++....+.   +...+.+++|+|||++| ++++.|++|++|
T Consensus       196 ~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~---~~~~~~~va~spdg~~l~va~~~~~~i~v~  271 (301)
T d1l0qa2         196 VKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP---VGPDPAGIAVTPDGKKVYVALSFCNTVSVI  271 (301)
T ss_dssp             EEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE---CCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc---CCCCEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            332 3446778999999987766544   679999999998877664   23568999999999987 577789999999


Q ss_pred             ecCCcceeeeeeeC
Q psy13076        334 DIETKSAVSEFLMG  347 (423)
Q Consensus       334 d~~~~~~i~~~~~~  347 (423)
                      |+++++.+.++..+
T Consensus       272 D~~t~~~~~~~~vg  285 (301)
T d1l0qa2         272 DTATNTITATMAVG  285 (301)
T ss_dssp             ETTTTEEEEEEECS
T ss_pred             ECCCCeEEEEEeCC
Confidence            99999888776543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=8.2e-24  Score=198.10  Aligned_cols=295  Identities=12%  Similarity=0.057  Sum_probs=196.8

Q ss_pred             eeeEEEEeCCEEEEEeccceEEEEeccCCCCc----eeecccccCceeEEEEeCCCCeE-EEecCCCceEEeecCCccee
Q psy13076          8 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTP----IRVIKGHNKPITALALSPDRGTV-FTGSHDGFITRWNAKTEYIF   82 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~~~gh~~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~   82 (423)
                      +.++++|||+++++++.||.|++||+.+....    +....+|.+.+.+++|+|||++| +++..++++++||.+++.+.
T Consensus        65 ~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~  144 (426)
T d1hzua2          65 HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK  144 (426)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcccee
Confidence            46889999999999999999999999864321    22345788889999999999986 45568999999999988766


Q ss_pred             ecccCC----------CCCCceEEeeCCCCCeEEEec--CCeEEEEecCCCccc-ccccCCcceEEEEEECCCCCEEEEE
Q psy13076         83 ATLPRT----------QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSPSGFYIASG  149 (423)
Q Consensus        83 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~~~~h~~~i~~~~~sp~~~~l~s~  149 (423)
                      ..+...          ..+....+..++++..++...  ...+.+....++... ....++...+..+.|+|++++++++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a  224 (426)
T d1hzua2         145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTA  224 (426)
T ss_dssp             EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred             EEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEee
Confidence            544321          123334566677777666643  344555555444332 2334677788999999999988776


Q ss_pred             cc-CCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEe
Q psy13076        150 DI-SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFK  228 (423)
Q Consensus       150 ~~-d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  228 (423)
                      .. +..+.+++..+.+............+...+.+.+.+..                               .+.     
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~-----  268 (426)
T d1hzua2         225 ANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG-------------------------------PVW-----  268 (426)
T ss_dssp             ETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE-------------------------------EEE-----
T ss_pred             eecccceeeeecccccEEEEeccCCcccccceeeeecCCCC-------------------------------ceE-----
Confidence            54 56788999887765443332221111111222111110                               111     


Q ss_pred             cCCCeeEEEEeCCCeEEEEcCC-------CceeeeeccccccCeEEEEECCCCCEEEE-------EEecCeEEEEECCCc
Q psy13076        229 PSRPFRIITGSEDNTIAVFEGP-------PFKFKMTKQEHSRFVQAVRYSPSGSHFAS-------AGFDGKVFLYDGASA  294 (423)
Q Consensus       229 ~~~~~~~~s~s~d~~i~~~~~~-------~~~~~~~~~~~~~~i~~l~~s~~g~~l~s-------~s~dg~i~vwd~~~~  294 (423)
                            .++.+.|+.+.+++..       ..+....+..|...+..++|+|+|++|++       ++.|++|++||.+++
T Consensus       269 ------~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         269 ------STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL  342 (426)
T ss_dssp             ------EEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             ------EeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCC
Confidence                  1122233444444321       23455667788888999999999999994       567899999999988


Q ss_pred             cceeccc-------ccccCCCeEEEEECCCCCeEE-EE----eCCCcEEEEecCCcceeeee
Q psy13076        295 DLVSELG-------NPAHKGGVYAVAWKPDGTQLL-TA----SGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       295 ~~~~~~~-------~~~~~~~i~~l~~~~~~~~l~-s~----s~d~~i~iwd~~~~~~i~~~  344 (423)
                      +...++.       ...|...+..++|+|||++++ ++    +.+++|+|||.++.+.....
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i  404 (426)
T d1hzua2         343 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV  404 (426)
T ss_dssp             TSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE
T ss_pred             CcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEE
Confidence            7654431       123566789999999999774 32    35788999999999865543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=3.5e-22  Score=177.08  Aligned_cols=265  Identities=19%  Similarity=0.223  Sum_probs=190.2

Q ss_pred             EEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC
Q psy13076         62 VFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP  141 (423)
Q Consensus        62 l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp  141 (423)
                      .++++.|++|.+||+++++++.++..                                           ...+..++|+|
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~-------------------------------------------g~~p~~va~sp   41 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPV-------------------------------------------GSNPMGAVISP   41 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC-------------------------------------------SSSEEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEEC-------------------------------------------CCCceEEEEeC
Confidence            35778899999999988876654321                                           12356789999


Q ss_pred             CCCEE-EEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCc
Q psy13076        142 SGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSK  220 (423)
Q Consensus       142 ~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (423)
                      ||+++ ++++.++.|++||+.+.+.......   ...+..++|++++..+++.+.... ...++....+.....+..+ .
T Consensus        42 dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~  116 (301)
T d1l0qa2          42 DGTKVYVANAHSNDVSIIDTATNNVIATVPA---GSSPQGVAVSPDGKQVYVTNMASS-TLSVIDTTSNTVAGTVKTG-K  116 (301)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTTT-EEEEEETTTTEEEEEEECS-S
T ss_pred             CCCEEEEEECCCCEEEEEECCCCceeeeeec---cccccccccccccccccccccccc-eeeecccccceeeeecccc-c
Confidence            99987 5677899999999988776544332   235688999999998887765543 3456666666655555544 4


Q ss_pred             ceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec-CeEEEEECCCccceec
Q psy13076        221 PINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD-GKVFLYDGASADLVSE  299 (423)
Q Consensus       221 ~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d-g~i~vwd~~~~~~~~~  299 (423)
                      .+..+.++|++...++++..++.+.+|+............+ ..+..++++|+++++++++.+ +.+.+|+....+....
T Consensus       117 ~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (301)
T d1l0qa2         117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT  195 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeec
Confidence            56788999999988888888999999998777655544433 446789999999988887765 5677888776665544


Q ss_pred             ccccccCCCeEEEEECCCCCeEEEEeC---CCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEE
Q psy13076        300 LGNPAHKGGVYAVAWKPDGTQLLTASG---DKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYL  376 (423)
Q Consensus       300 ~~~~~~~~~i~~l~~~~~~~~l~s~s~---d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~  376 (423)
                      +.   ....+..++|+++++.++.++.   +++|++||+.+++.+..+..                              
T Consensus       196 ~~---~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~------------------------------  242 (301)
T d1l0qa2         196 VK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV------------------------------  242 (301)
T ss_dssp             EE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC------------------------------
T ss_pred             cc---ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC------------------------------
Confidence            42   3355778999999998876543   46799999988765443321                              


Q ss_pred             ecCCCCCceEEeccCCCceeEEEecCCCCeE-EEecCCCcEEEeeCCC
Q psy13076        377 DVNNPSTPIRVIKGHNKPITALALSPDRGTV-FTGSHDGFITRWNAKT  423 (423)
Q Consensus       377 ~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l-~s~s~D~~i~~W~~~~  423 (423)
                                     ...+++++|+||+++| ++++.|+.|++||++|
T Consensus       243 ---------------~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         243 ---------------GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             ---------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ---------------CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence                           1235677777777765 5666777777777654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2.4e-25  Score=202.95  Aligned_cols=280  Identities=10%  Similarity=0.030  Sum_probs=185.9

Q ss_pred             eeeEEEEeCCEEEEEeccc--eEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecc
Q psy13076          8 QQVSCLWQGDYLLTVSLSG--FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATL   85 (423)
Q Consensus         8 ~~~~~~~~~~~~~~~~~dg--~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~   85 (423)
                      +.++++|||++|++++.+.  .|++||+.+  .....+.+|.+.|.+++|+|++++|++++.|+.+++|+.+++..... 
T Consensus        46 ~~~~~spDg~~l~~~~~~~g~~v~v~d~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-  122 (360)
T d1k32a3          46 RYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI-  122 (360)
T ss_dssp             EEEEECSSSEEEEEEEETTEEEEEEEETTT--CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-
T ss_pred             EEEEECCCCCEEEEEEcCCCCEEEEEECCC--CcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeee-
Confidence            4567777999999887664  799999864  45668889999999999999999999999999999999987544322 


Q ss_pred             cCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc----------cCCcE
Q psy13076         86 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKV  155 (423)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~----------~d~~i  155 (423)
                                                               +..|...+.+++|+|+|++|+.++          .++.+
T Consensus       123 -----------------------------------------~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3         123 -----------------------------------------ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             -----------------------------------------EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             -----------------------------------------eecccccccchhhccceeeeeeeccccccceeeccccce
Confidence                                                     234556677889999999998643          34579


Q ss_pred             EEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCc-------ceecccCCCcceeEEEEe
Q psy13076        156 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGT-------SVGEISGQSKPINSCDFK  228 (423)
Q Consensus       156 ~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~  228 (423)
                      ++||..+++...   .......+..++|+|+|+.+++.+.....  .+|......       ....+..+......+.++
T Consensus       162 ~v~d~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~s~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  236 (360)
T d1k32a3         162 HVYDMEGRKIFA---ATTENSHDYAPAFDADSKNLYYLSYRSLD--PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV  236 (360)
T ss_dssp             EEEETTTTEEEE---CSCSSSBEEEEEECTTSCEEEEEESCCCC--CEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred             eeeccccCceee---ecccccccccccccCCCCEEEEEeCCCce--EcccccccceeeccccceEEEecccCccccceEC
Confidence            999998765432   22334667889999999999887654322  233222111       111122222223333444


Q ss_pred             cCCCeeEEEEeCC-----CeEEEEcCCCceeeeeccccccCeEEEEECCC---CCEEEEEEecCeEEEEECCCccceecc
Q psy13076        229 PSRPFRIITGSED-----NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPS---GSHFASAGFDGKVFLYDGASADLVSEL  300 (423)
Q Consensus       229 ~~~~~~~~s~s~d-----~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~---g~~l~s~s~dg~i~vwd~~~~~~~~~~  300 (423)
                      +++.. ++++..+     ..+..++....... ....+...+..+.+.+.   +.++++++.++.|++||+.+++..   
T Consensus       237 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---  311 (360)
T d1k32a3         237 PRSMT-SEAGEYDLNDMYKRSSPINVDPGDYR-MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT---  311 (360)
T ss_dssp             CGGGS-CCCCCCCCTTGGGGCEECSCCCBCEE-EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE---
T ss_pred             CCcCc-ccccceeecccccceeecccCcCcee-EeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE---
Confidence            44332 1222111     11222332222211 12223333444444444   346788889999999999876542   


Q ss_pred             cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeee
Q psy13076        301 GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEF  344 (423)
Q Consensus       301 ~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~  344 (423)
                         .|.+.+.+++|+|||++|++++.||+|++||+.+++...++
T Consensus       312 ---~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         312 ---EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             ---EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred             ---EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence               24456899999999999999999999999999988765543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.7e-23  Score=188.66  Aligned_cols=297  Identities=10%  Similarity=0.061  Sum_probs=203.1

Q ss_pred             CEEEEEeccceEEEEeccCCCCceeeccc--ccCceeEEEEeCCCCeE-EEecCCCceEEeecCCcceeecccCCCCC--
Q psy13076         17 DYLLTVSLSGFISYLDVNNPSTPIRVIKG--HNKPITALALSPDRGTV-FTGSHDGFITRWNAKTEYIFATLPRTQRG--   91 (423)
Q Consensus        17 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~g--h~~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~~~~~~~~~~--   91 (423)
                      +|+++++.|+.|.+||+.+ .+.+.++..  +...+.+++|+|||++| ++++.|+.|++||+++++++..+......  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s-~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCC-CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence            5899999999999999976 456666654  44568899999999986 67788999999999999887766443221  


Q ss_pred             --CceEEeeCCCCCeEEEec-------------CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEE
Q psy13076         92 --QPIVLGGDPKGKNFLYTN-------------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVR  156 (423)
Q Consensus        92 --~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~  156 (423)
                        ....+.++|+++.++...             ...+.+++..++.....+..+ ..++.+.|+|+|+++++++.  .+.
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~--~~~  157 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGR--DLH  157 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESS--SEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcC--Ccc
Confidence              122466788888776542             346778888888877776644 45778899999999999875  477


Q ss_pred             EEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEE
Q psy13076        157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRII  236 (423)
Q Consensus       157 vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  236 (423)
                      +||..+.+.........   ......++|++..+........... .                   ........... ..
T Consensus       158 ~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~-~~  213 (337)
T d1pbyb_         158 VMDPEAGTLVEDKPIQS---WEAETYAQPDVLAVWNQHESSGVMA-T-------------------PFYTARKDIDP-AD  213 (337)
T ss_dssp             EEETTTTEEEEEECSTT---TTTTTBCCCBCCCCCCCCTTTTEEE-E-------------------EEEEEBTTSCT-TS
T ss_pred             eeeeecCcEEEEeecCC---ccccceecCCcceeeccccccceee-e-------------------eeeeeeeccce-ee
Confidence            89988776544322221   1122334454443322111111000 0                   00000001100 11


Q ss_pred             EEeCCCeEEEEcCCCceeee-eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEEC
Q psy13076        237 TGSEDNTIAVFEGPPFKFKM-TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK  315 (423)
Q Consensus       237 s~s~d~~i~~~~~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~  315 (423)
                      ..+.++.+.+|+........ ....+...+..++++|++.+++.+  ++.|++||.++++.+..+.   +...+.+++|+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s  288 (337)
T d1pbyb_         214 PTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP---LPHSYYSVNVS  288 (337)
T ss_dssp             GGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE---CSSCCCEEEEC
T ss_pred             ecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc---CCCCEEEEEEC
Confidence            22345567777766554332 233455667888999999988765  6899999999999887764   45668899999


Q ss_pred             CCCCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076        316 PDGTQLLTASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       316 ~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      |||++|++++.|++|++||.++.+.+.++..
T Consensus       289 ~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            9999999999999999999999998877643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=1.6e-23  Score=189.55  Aligned_cols=306  Identities=12%  Similarity=0.044  Sum_probs=211.7

Q ss_pred             EEEEeCCEEEEEeccceEEEEeccCCCCceeecc-cccCceeEEEEeCCCCeE-EEecCCCceEEeecCCcceeecccCC
Q psy13076         11 SCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIK-GHNKPITALALSPDRGTV-FTGSHDGFITRWNAKTEYIFATLPRT   88 (423)
Q Consensus        11 ~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~l-~sg~~D~~i~vW~~~~~~~~~~~~~~   88 (423)
                      |+..+|+|+++++.|+.|.+||+.+ .+++.+++ .|...+..++|+|||+++ ++++.++.|++||+++++....+...
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t-~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCC-CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            5667899999999999999999986 56777776 466778899999999876 67778999999999999877665432


Q ss_pred             CCC-----CceEEeeCCCCCeEEEec-------------CCeEEEEecCCCcccccccCCc--ceEEEEEECCCCCEEEE
Q psy13076         89 QRG-----QPIVLGGDPKGKNFLYTN-------------GNSVIIRNIENPAISDIYTEHS--CAVNVAKYSPSGFYIAS  148 (423)
Q Consensus        89 ~~~-----~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~~~h~--~~i~~~~~sp~~~~l~s  148 (423)
                      ...     .+..+.++|+|+.++...             ...+.+++..+++....+..+.  ..+..+.++++++.+++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            211     233467789998776542             3457778777766655554332  34556677888876665


Q ss_pred             EccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEe
Q psy13076        149 GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFK  228 (423)
Q Consensus       149 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  228 (423)
                      +   ..+.+|+..+.+.......   ......+.++|++..+........... +..                  .....
T Consensus       162 ~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------------~~~~~  216 (346)
T d1jmxb_         162 G---PDIYKMDVKTGKYTVALPL---RNWNRKGYSAPDVLYFWPHQSPRHEFS-MLY------------------TIARF  216 (346)
T ss_dssp             S---SSEEEECTTTCCEEEEECS---TTCCCTTBCCCBCCCCCCCCCTTCEEE-EEE------------------EEEEC
T ss_pred             C---CcceEEEccCCCEEEEEec---CCCccceEEeccccEEEEEecCCCceE-eee------------------eeeee
Confidence            4   4588999887665443222   233455667888776554433222111 110                  01111


Q ss_pred             cCCCeeEEEEeCCCeEEEEcCCCceee-eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCC
Q psy13076        229 PSRPFRIITGSEDNTIAVFEGPPFKFK-MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKG  307 (423)
Q Consensus       229 ~~~~~~~~s~s~d~~i~~~~~~~~~~~-~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  307 (423)
                      +.....++++..+..+.+|+....... .....+...+..+.+++++.+++... ++.|.+||..+++.+..+.   +..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~---~~~  292 (346)
T d1jmxb_         217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN---LDH  292 (346)
T ss_dssp             -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE---CSS
T ss_pred             ccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc---CCC
Confidence            122223455566777888887655433 33445667788899999998887765 4689999999998877664   334


Q ss_pred             CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeee
Q psy13076        308 GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLM  346 (423)
Q Consensus       308 ~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~  346 (423)
                      .+.+++|+|||++|++++.|++|++||.++++.+.+...
T Consensus       293 ~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         293 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            688999999999999999999999999999998887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.1e-22  Score=183.99  Aligned_cols=301  Identities=9%  Similarity=0.021  Sum_probs=202.1

Q ss_pred             EEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEe--cCCeEEEEecCCCcccccccCC
Q psy13076         53 LALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYT--NGNSVIIRNIENPAISDIYTEH  130 (423)
Q Consensus        53 l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~h  130 (423)
                      ++|++++++|++++.|++|.+||+++++++.++.......+..+.++|+|+.++.+  .++.+.+||+++++....+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            47899999999999999999999999999887754444556678889999987554  3678999999998776554322


Q ss_pred             ------cceEEEEEECCCCCEEEEEc------------cCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEE
Q psy13076        131 ------SCAVNVAKYSPSGFYIASGD------------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVV  192 (423)
Q Consensus       131 ------~~~i~~~~~sp~~~~l~s~~------------~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~  192 (423)
                            ...+..+.|+|||++++.++            .+..+.+|+..+++..........+..+..+.++++++.++.
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence                  23456789999999998775            367788898876554322222222344566777777765443


Q ss_pred             EEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECC
Q psy13076        193 VGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSP  272 (423)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~  272 (423)
                       + ..   ..++...++..+..+..+. ....+.++|++....+....++.+.++.                 ....+.+
T Consensus       162 -~-~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~  218 (346)
T d1jmxb_         162 -G-PD---IYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLY-----------------TIARFKD  218 (346)
T ss_dssp             -S-SS---EEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEE-----------------EEEEC--
T ss_pred             -C-Cc---ceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeee-----------------eeeeecc
Confidence             2 11   3455555555555544332 2344455666554444444444444432                 1122334


Q ss_pred             CCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEe
Q psy13076        273 SGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVED  352 (423)
Q Consensus       273 ~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~  352 (423)
                      ....++++..++.+.+|+..++....... ..|...+..+.++|++.+++.... +.|++||..+++.+..+.       
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-------  289 (346)
T d1jmxb_         219 DKQDPATADLLYGYLSVDLKTGKTHTQEF-ADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-------  289 (346)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEE-EECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-------
T ss_pred             CceeEeeccCCceEEEEECCCCceEEEEe-ecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-------
Confidence            45566777788899999998887654432 246677889999999988887654 579999998876544321       


Q ss_pred             eEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        353 QQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       353 ~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                                                            +...+++++||||+++|++++.|+.|++||++|
T Consensus       290 --------------------------------------~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         290 --------------------------------------LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             --------------------------------------CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             --------------------------------------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence                                                  123577899999999999988899999999865

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=2.7e-22  Score=180.56  Aligned_cols=284  Identities=13%  Similarity=0.105  Sum_probs=186.4

Q ss_pred             CeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEE
Q psy13076         60 GTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKY  139 (423)
Q Consensus        60 ~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~  139 (423)
                      +++++++.|++|++||+++++++..+...                                        .+...+..++|
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~----------------------------------------~~~~~~~~i~~   41 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIA----------------------------------------DAGPTPMVPMV   41 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT----------------------------------------TCTTCCCCEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECC----------------------------------------CCCCCccEEEE
Confidence            47999999999999999998776654321                                        12234567899


Q ss_pred             CCCCCEE-EEEccCCcEEEEEcCCCceeEEeeecCC---CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecc
Q psy13076        140 SPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPI---GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEI  215 (423)
Q Consensus       140 sp~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (423)
                      +|||+++ ++++.++.|.+||+.+++..........   ...+..++|+|+++.++++.......               
T Consensus        42 spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~---------------  106 (337)
T d1pbyb_          42 APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE---------------  106 (337)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC---------------
T ss_pred             CCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcce---------------
Confidence            9999987 5677899999999998876654433221   12345789999999987764321100               


Q ss_pred             cCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCcc
Q psy13076        216 SGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASAD  295 (423)
Q Consensus       216 ~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~  295 (423)
                                        .......+..+.+|+............ ...+..++|+|+|+++++++.  .+.+||..+++
T Consensus       107 ------------------~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~  165 (337)
T d1pbyb_         107 ------------------LTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGT  165 (337)
T ss_dssp             ------------------SSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEEEETTTTE
T ss_pred             ------------------eeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--CcceeeeecCc
Confidence                              011233466778888777665554443 345778999999999998864  46789988877


Q ss_pred             ceecccccccC-------------------C--CeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeE
Q psy13076        296 LVSELGNPAHK-------------------G--GVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQ  354 (423)
Q Consensus       296 ~~~~~~~~~~~-------------------~--~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~  354 (423)
                      ....+......                   .  .........+...+.....++.+.+||..+++...............
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (337)
T d1pbyb_         166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS  245 (337)
T ss_dssp             EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred             EEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEE
Confidence            65544221100                   0  01111112222223334445668999998887654433322222333


Q ss_pred             EEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEecCCCcEEEeeCCC
Q psy13076        355 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKT  423 (423)
Q Consensus       355 ~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~s~D~~i~~W~~~~  423 (423)
                      ....+++..+..+  ++.+.+||+.+... +..+ .+...+.+++|+|||++|++++.|+.|++||.+|
T Consensus       246 ~~~~~~~~~~~~~--~~~i~v~d~~~~~~-~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         246 TAVNPAKTRAFGA--YNVLESFDLEKNAS-IKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EEECTTSSEEEEE--ESEEEEEETTTTEE-EEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             EEecccceEEEEc--cccEEEEECCCCcE-EEEE-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            4445566666554  58899999988643 3333 4567799999999999999999999999999875

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=3.3e-19  Score=163.05  Aligned_cols=307  Identities=14%  Similarity=0.058  Sum_probs=203.4

Q ss_pred             cccccCceeEEEEeCCCCeEEEe-----cCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe
Q psy13076         43 IKGHNKPITALALSPDRGTVFTG-----SHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN  117 (423)
Q Consensus        43 ~~gh~~~V~~l~~~~~~~~l~sg-----~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  117 (423)
                      ..+|.+++.+++++|+++.++..     +.++.|.+||.++++++..+..                              
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~------------------------------   65 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG------------------------------   65 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC------------------------------
Confidence            45689999999999999987653     3446688888888776654321                              


Q ss_pred             cCCCcccccccCCcceEEEEEECCCCCEEEEEc----------cCCcEEEEEcCCCceeEEeeecCC-----CCCeeEEE
Q psy13076        118 IENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVNKEHILKNEFHPI-----GGPIKDIA  182 (423)
Q Consensus       118 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~-----~~~v~~v~  182 (423)
                                  +..  ..+.|+|||+++++++          .++.|++||..+.+.......+..     ......+.
T Consensus        66 ------------~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~  131 (373)
T d2madh_          66 ------------GFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNA  131 (373)
T ss_pred             ------------CCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEE
Confidence                        111  1467888888888764          467899999998776544332211     11234678


Q ss_pred             ECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeecc---
Q psy13076        183 WSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQ---  259 (423)
Q Consensus       183 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~---  259 (423)
                      |+++++.+++..........++.........    +.....++.++|++...+++.+.|+.+.+|+...........   
T Consensus       132 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~  207 (373)
T d2madh_         132 NTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAM  207 (373)
T ss_pred             EEeCCCcEEEEEEcCCCceEEeeccCCeEEE----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeec
Confidence            9999988877654443333444444333222    223456788999998888999999999999876554433322   


Q ss_pred             ---ccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        260 ---EHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       260 ---~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                         ........+.+++++.++ ..+.++.+.+|+..............+........+.|.+...++.+.|+....+-..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  286 (373)
T d2madh_         208 LTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS  286 (373)
T ss_pred             cccCccceeeeEEECCCceEE-EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecC
Confidence               122234456667766554 5567899999998876643332223344555667777777777777777654433211


Q ss_pred             CcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCe--EEEecCCC
Q psy13076        337 TKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT--VFTGSHDG  414 (423)
Q Consensus       337 ~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~--l~s~s~D~  414 (423)
                                             .+..++....++.+.+||..+... +..+ .+...+.+++|+||++.  +++++.|+
T Consensus       287 -----------------------~~~~~~~~~~~~~v~~~d~~t~~~-~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~  341 (373)
T d2madh_         287 -----------------------EQSAWKLHAAAKEVTSVTGLVGQT-SSQI-SLGHDVDAISVAQDGGPDLYALSAGTE  341 (373)
T ss_pred             -----------------------CCceEEeecCCCeEEEEECCCCcE-EEEe-cCCCCeeEEEECCCCCEEEEEEeCCCC
Confidence                                   344456667778888999877543 3333 46678999999999984  47899999


Q ss_pred             cEEEeeCCC
Q psy13076        415 FITRWNAKT  423 (423)
Q Consensus       415 ~i~~W~~~~  423 (423)
                      +|++||++|
T Consensus       342 ~v~v~D~~t  350 (373)
T d2madh_         342 VLHIYDAGA  350 (373)
T ss_pred             eEEEEECCC
Confidence            999999875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3e-19  Score=160.35  Aligned_cols=281  Identities=12%  Similarity=0.140  Sum_probs=181.5

Q ss_pred             EEEEeccceEEEEeccCCCCceeecc--cccCceeEEEEeCCCCeEE-EecCCCceEEeecCCcceeecccCCCCCCceE
Q psy13076         19 LLTVSLSGFISYLDVNNPSTPIRVIK--GHNKPITALALSPDRGTVF-TGSHDGFITRWNAKTEYIFATLPRTQRGQPIV   95 (423)
Q Consensus        19 ~~~~~~dg~i~~~d~~~~~~~~~~~~--gh~~~V~~l~~~~~~~~l~-sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~   95 (423)
                      +++++.|+.|++|+++.... ...++  .|.+.|..|+|+|||++|+ ++..|+.|++|++........+.         
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~-l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~---------   76 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGA-LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA---------   76 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSC-EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE---------
T ss_pred             EEECCCCCcEEEEEEcCCCC-eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe---------
Confidence            35678999999999975433 22333  6889999999999999884 55569999999986532111000         


Q ss_pred             EeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc-CCcEEEEEcCCCceeEEeeecCC
Q psy13076         96 LGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPI  174 (423)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~  174 (423)
                                          .          ...+...+..++|+|||+++++++. ++.+++|+...............
T Consensus        77 --------------------~----------~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~  126 (333)
T d1ri6a_          77 --------------------A----------ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG  126 (333)
T ss_dssp             --------------------E----------EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC
T ss_pred             --------------------e----------ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCC
Confidence                                0          0012233456899999999998875 67899999876654443333444


Q ss_pred             CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCccee------cccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076        175 GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVG------EISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE  248 (423)
Q Consensus       175 ~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~  248 (423)
                      ...+.++.++|+++.+++........ .++.........      ...........++|++.+.+...+....+...+++
T Consensus       127 ~~~~~~v~~s~d~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~  205 (333)
T d1ri6a_         127 LDGCHSANISPDNRTLWVPALKQDRI-CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE  205 (333)
T ss_dssp             CTTBCCCEECTTSSEEEEEEGGGTEE-EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CccceEEEeeecceeeecccccccee-eEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEe
Confidence            55678899999999988877655432 333333322111      11123345678899999888667776777777776


Q ss_pred             CCCc----eeeeec------cccccCeEEEEECCCCCEEEEE-EecCeEEEEECCCccceeccc-ccccCCCeEEEEECC
Q psy13076        249 GPPF----KFKMTK------QEHSRFVQAVRYSPSGSHFASA-GFDGKVFLYDGASADLVSELG-NPAHKGGVYAVAWKP  316 (423)
Q Consensus       249 ~~~~----~~~~~~------~~~~~~i~~l~~s~~g~~l~s~-s~dg~i~vwd~~~~~~~~~~~-~~~~~~~i~~l~~~~  316 (423)
                      ....    ......      .........++++|++++++.. ..++.+.+|+.........+. .......+.+++|+|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp  285 (333)
T d1ri6a_         206 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH  285 (333)
T ss_dssp             SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT
T ss_pred             ecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC
Confidence            3221    111111      1123446678999999976554 457789999876544332221 112335577899999


Q ss_pred             CCCeEEEEe-CCCcEEEEec--CCcce
Q psy13076        317 DGTQLLTAS-GDKTCKLWDI--ETKSA  340 (423)
Q Consensus       317 ~~~~l~s~s-~d~~i~iwd~--~~~~~  340 (423)
                      ||++|++++ .+++|++|++  +++++
T Consensus       286 DGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         286 SGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             CCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            999877664 5689999955  55543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=7.4e-18  Score=151.08  Aligned_cols=279  Identities=11%  Similarity=0.094  Sum_probs=174.6

Q ss_pred             eEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEEC
Q psy13076         61 TVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS  140 (423)
Q Consensus        61 ~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~s  140 (423)
                      .+++++.|++|++|++++...+..+                                        ....|...+..++|+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~----------------------------------------~~~~~~~~v~~la~s   45 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLT----------------------------------------QVVDVPGQVQPMVVS   45 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEE----------------------------------------EEEECSSCCCCEEEC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEE----------------------------------------EEEcCCCCEeEEEEe
Confidence            3588889999999998753211111                                        012355678889999


Q ss_pred             CCCCEEEE-EccCCcEEEEEcCCCceeEEe-eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc--eeccc
Q psy13076        141 PSGFYIAS-GDISGKVRIWDTVNKEHILKN-EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS--VGEIS  216 (423)
Q Consensus       141 p~~~~l~s-~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  216 (423)
                      |||++|++ +..|+.|++|++......... ........+..++|+|||+++++++..... ..++..+....  .....
T Consensus        46 pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~  124 (333)
T d1ri6a_          46 PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN-VSVTRLEDGLPVGVVDVV  124 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTE-EEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCc-eeeeccccccceeccccc
Confidence            99999955 555899999998765432221 112233456789999999999988755443 23343333322  22233


Q ss_pred             CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee------eeccccccCeEEEEECCCCCEEEEEE-ecCeEEEE
Q psy13076        217 GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK------MTKQEHSRFVQAVRYSPSGSHFASAG-FDGKVFLY  289 (423)
Q Consensus       217 ~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~------~~~~~~~~~i~~l~~s~~g~~l~s~s-~dg~i~vw  289 (423)
                      .+...+.++.++|++.+.+.....+..+.+|+.......      ............++|++++.++.... ..+...++
T Consensus       125 ~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~  204 (333)
T d1ri6a_         125 EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVW  204 (333)
T ss_dssp             CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEE
Confidence            455667889999999987776667778998875432111      11122334567899999999876655 45677787


Q ss_pred             ECCCccce----ecc---c-ccccCCCeEEEEECCCCCeEEEE-eCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEec
Q psy13076        290 DGASADLV----SEL---G-NPAHKGGVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQ  360 (423)
Q Consensus       290 d~~~~~~~----~~~---~-~~~~~~~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~  360 (423)
                      +.......    ..+   . ..........+++++++++++.. ..++++.+|++..........               
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  269 (333)
T d1ri6a_         205 ELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE---------------  269 (333)
T ss_dssp             ESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE---------------
T ss_pred             eecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE---------------
Confidence            75432211    111   0 01223456778999999876655 556789999876543222110               


Q ss_pred             CcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCeEEEe-cCCCcEEEeeC
Q psy13076        361 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG-SHDGFITRWNA  421 (423)
Q Consensus       361 g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~l~s~-s~D~~i~~W~~  421 (423)
                                                ....+...+++++|+|||++|+++ +.++.|++|++
T Consensus       270 --------------------------~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         270 --------------------------GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             --------------------------EEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             --------------------------EEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence                                      111223456778999999987655 45688999853

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=7.3e-17  Score=147.19  Aligned_cols=301  Identities=10%  Similarity=-0.018  Sum_probs=178.1

Q ss_pred             eeEEEEeCCEEEEE-----eccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEec----------CCCceEE
Q psy13076          9 QVSCLWQGDYLLTV-----SLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGS----------HDGFITR   73 (423)
Q Consensus         9 ~~~~~~~~~~~~~~-----~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~----------~D~~i~v   73 (423)
                      .+++.+||+.++..     +.++.|++||..+ .+.+.++.++..+  .++|+|||++|++++          .++.|++
T Consensus        25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t-g~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v  101 (373)
T d2madh_          25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGS-GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             ccccCCCCCEEEEEcccccCCCceEEEEECCC-CCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEE
Confidence            46778899998764     3456799999876 5667778777655  699999999988864          4688999


Q ss_pred             eecCCcceeecccCCCCCC------ceEEeeCCCCCeEEEe---cCCeEEEEecCCCcccccccCCcceEEEEEECCCCC
Q psy13076         74 WNAKTEYIFATLPRTQRGQ------PIVLGGDPKGKNFLYT---NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF  144 (423)
Q Consensus        74 W~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  144 (423)
                      ||..+++....+.......      +-.+.++++++.++..   .++.+.+|+....+..    .+.....++.++|+++
T Consensus       102 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~g~  177 (373)
T d2madh_         102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD----QLLSSPTCYHIHPGAP  177 (373)
T ss_pred             EECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE----EEeccceeEEEecCCC
Confidence            9999988766653322111      1123345555543322   2345666666554432    3344566788999987


Q ss_pred             EE-EEEccCCcEEEEEcCCCceeEEeeec--CCC--CCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce--ecccC
Q psy13076        145 YI-ASGDISGKVRIWDTVNKEHILKNEFH--PIG--GPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV--GEISG  217 (423)
Q Consensus       145 ~l-~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~--~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  217 (423)
                      .+ ++.+.|+++.+|+....+........  ...  .....+.+.+++..+.. +.+.  ...++........  .....
T Consensus       178 ~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~v~~~~~~~~~~~~~~~~~~  254 (373)
T d2madh_         178 STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSG--KILQADISAAGATNKAPIDA  254 (373)
T ss_pred             cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEe-cCCc--eEEEEEcCCCeEEEEEeecc
Confidence            55 67889999999998776544322111  111  11234455555544332 2111  1112222111100  00011


Q ss_pred             CCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccce
Q psy13076        218 QSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV  297 (423)
Q Consensus       218 ~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~  297 (423)
                      .........+.|.... .++.+.|+                      -....+.+++..+++...++.+.+||..+++.+
T Consensus       255 ~~~~~~~~~~~~~~~~-~~~~~~d~----------------------~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~  311 (373)
T d2madh_         255 LSGGRKADTWRPGGWQ-QVAYLKSS----------------------DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS  311 (373)
T ss_pred             ccCcEEeeeeccCcce-eeEEecCC----------------------CeEEEecCCCceEEeecCCCeEEEEECCCCcEE
Confidence            1111111111111111 11111111                      011223344556667777889999999999887


Q ss_pred             ecccccccCCCeEEEEECCCCCe--EEEEeCCCcEEEEecCCcceeeeee
Q psy13076        298 SELGNPAHKGGVYAVAWKPDGTQ--LLTASGDKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       298 ~~~~~~~~~~~i~~l~~~~~~~~--l~s~s~d~~i~iwd~~~~~~i~~~~  345 (423)
                      ..+.   +...+.+++|+|||+.  +++++.|++|++||+.+++.+.++.
T Consensus       312 ~~~~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         312 SQIS---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EEec---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            7663   4567889999999984  4688999999999999999887764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=7.6e-18  Score=152.58  Aligned_cols=287  Identities=12%  Similarity=0.027  Sum_probs=185.2

Q ss_pred             EEEEeCCEEEEEe-----ccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEe----------cCCCceEEee
Q psy13076         11 SCLWQGDYLLTVS-----LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG----------SHDGFITRWN   75 (423)
Q Consensus        11 ~~~~~~~~~~~~~-----~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg----------~~D~~i~vW~   75 (423)
                      |-.+||+.++...     .++.|++||..+ .+++.++..+..+  .++|+||+++|+..          +.|+.|++||
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~t-g~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCC-CcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            4467999987653     456899999976 5667777766555  79999999988754          4588999999


Q ss_pred             cCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc--cCC
Q psy13076         76 AKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD--ISG  153 (423)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~--~d~  153 (423)
                      .++++....+......                               .    .........+.|+|++++++.++  .+.
T Consensus        85 ~~t~~~~~~~~~~~~~-------------------------------~----~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          85 PVTLLPTADIELPDAP-------------------------------R----FLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             TTTCCEEEEEEETTCC-------------------------------C----CCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CCCCCEEEEEecCCcc-------------------------------e----eecCCCCceEEEecCCCeeEEecCCCCc
Confidence            9987765443211000                               0    00111123467999999887664  467


Q ss_pred             cEEEEEcCCCceeEEeeecC-----CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEe
Q psy13076        154 KVRIWDTVNKEHILKNEFHP-----IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFK  228 (423)
Q Consensus       154 ~i~vwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  228 (423)
                      .+.+|+..+.+.........     ...+...+.++++++.+++....... ..........     ..+...+....+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~  203 (355)
T d2bbkh_         130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT-PEITHTEVFH-----PEDEFLINHPAYS  203 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC-CEEEECCCCS-----CTTSCBCSCCEEE
T ss_pred             eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCe-EEEEeccccc-----ceecceeeecccc
Confidence            89999998776543322111     01233457788888877665433322 1122211111     1222334445566


Q ss_pred             cCCCeeEEEEeCCCeEEEEcCCCceeee--eccc----------cccCeEEEEECCCCCEEEEEEecC----------eE
Q psy13076        229 PSRPFRIITGSEDNTIAVFEGPPFKFKM--TKQE----------HSRFVQAVRYSPSGSHFASAGFDG----------KV  286 (423)
Q Consensus       229 ~~~~~~~~s~s~d~~i~~~~~~~~~~~~--~~~~----------~~~~i~~l~~s~~g~~l~s~s~dg----------~i  286 (423)
                      +.+. .++.++.++.+++|+........  ....          .......++++|++..++....++          .|
T Consensus       204 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v  282 (355)
T d2bbkh_         204 QKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV  282 (355)
T ss_dssp             TTTT-EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred             CCCC-eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeE
Confidence            6554 47778899999999865433211  1110          112234588999999887776553          69


Q ss_pred             EEEECCCccceecccccccCCCeEEEEECCCCC--eEEEEeCCCcEEEEecCCcceeeeee
Q psy13076        287 FLYDGASADLVSELGNPAHKGGVYAVAWKPDGT--QLLTASGDKTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       287 ~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~s~s~d~~i~iwd~~~~~~i~~~~  345 (423)
                      .+||..+++.+..+.   +...+.+++|+|||+  ++++++.|++|++||+++++.++++.
T Consensus       283 ~v~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         283 VVLDAKTGERLAKFE---MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEETTTCCEEEEEE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEEeCCCCcEEEEec---CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            999999998877664   234578999999997  45667789999999999999887763

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=4.5e-18  Score=154.13  Aligned_cols=304  Identities=13%  Similarity=0.093  Sum_probs=192.0

Q ss_pred             CceeEEEEeCCCCeEEEe-----cCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCc
Q psy13076         48 KPITALALSPDRGTVFTG-----SHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA  122 (423)
Q Consensus        48 ~~V~~l~~~~~~~~l~sg-----~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  122 (423)
                      +|+...+.+||++.++..     +.+.+|.+||..+++++.++.                                    
T Consensus         2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~------------------------------------   45 (355)
T d2bbkh_           2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID------------------------------------   45 (355)
T ss_dssp             CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE------------------------------------
T ss_pred             CCcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE------------------------------------
Confidence            355555678898887653     356678889988876654331                                    


Q ss_pred             ccccccCCcceEEEEEECCCCCEEEEE----------ccCCcEEEEEcCCCceeEEeeecC-----CCCCeeEEEECCCC
Q psy13076        123 ISDIYTEHSCAVNVAKYSPSGFYIASG----------DISGKVRIWDTVNKEHILKNEFHP-----IGGPIKDIAWSPDN  187 (423)
Q Consensus       123 ~~~~~~~h~~~i~~~~~sp~~~~l~s~----------~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~  187 (423)
                            .+.  ...++|+|||++++..          +.|+.|++||..+.+.........     .......++|+|++
T Consensus        46 ------~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  117 (355)
T d2bbkh_          46 ------GGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG  117 (355)
T ss_dssp             ------ECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred             ------CCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCC
Confidence                  111  1247889999888764          347899999999887654433221     12234568999999


Q ss_pred             CeEEEEEcCCceeeEEEeecCCcceecccCCCcc-------eeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccc
Q psy13076        188 QRMVVVGEGRERFGHVFMSETGTSVGEISGQSKP-------INSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQE  260 (423)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~  260 (423)
                      +.++++.........++...++..+..+......       ...+.+++++...++....++.+.+++.....     ..
T Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~  192 (355)
T d2bbkh_         118 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PE  192 (355)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----CT
T ss_pred             CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----ce
Confidence            9998887666666677777777766655443321       12234444444433333333333333322111     12


Q ss_pred             cccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccc----------cCCCeEEEEECCCCCeEEEEeCC---
Q psy13076        261 HSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA----------HKGGVYAVAWKPDGTQLLTASGD---  327 (423)
Q Consensus       261 ~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----------~~~~i~~l~~~~~~~~l~s~s~d---  327 (423)
                      +...+....+.+++..++.++.++.+++|+...++.........          .......++++|++..++..+.+   
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~  272 (355)
T d2bbkh_         193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE  272 (355)
T ss_dssp             TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred             ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCc
Confidence            23334556777888889999999999999988765421111000          11223458899999888766544   


Q ss_pred             -------CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcE--EEEEeCCCcEEEEecCCCCCceEEeccCCCceeEE
Q psy13076        328 -------KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY--LLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITAL  398 (423)
Q Consensus       328 -------~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~--l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i  398 (423)
                             ..|.+||..+++.+.++..+.  ....+.+.++|+.  ++++..++.|.+||.++++ .++.+.++...-..+
T Consensus       273 ~~~~~~~~~v~v~d~~t~~~~~~~~~~~--~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~-~~~~i~~~G~~p~~i  349 (355)
T d2bbkh_         273 WRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE-ELRSVNQLGHGPQVI  349 (355)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC-EEEEECCCCSSCCEE
T ss_pred             eeecCCCCeEEEEeCCCCcEEEEecCCC--CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC-EEEEEeCcCCCccEE
Confidence                   369999999998887765433  2345667789873  4566778999999999864 456677665555555


Q ss_pred             EecCC
Q psy13076        399 ALSPD  403 (423)
Q Consensus       399 ~~sp~  403 (423)
                      .+.++
T Consensus       350 ~~~d~  354 (355)
T d2bbkh_         350 TTADM  354 (355)
T ss_dssp             ECCCC
T ss_pred             EeCCC
Confidence            55443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.73  E-value=1.8e-15  Score=142.56  Aligned_cols=358  Identities=10%  Similarity=0.056  Sum_probs=187.6

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCce----eecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCC
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPI----RVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQR   90 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~----~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~   90 (423)
                      |+.++.  ..|+.|.+||+.++....    ..|.+|...|.+++||||+++|+.++.+  .++|....            
T Consensus        27 d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~--~~~~r~s~------------   90 (470)
T d2bgra1          27 DHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY--VKQWRHSY------------   90 (470)
T ss_dssp             SSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEE--EECSSSCE------------
T ss_pred             CCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECC--cceeeecc------------
Confidence            777776  458899999998755432    1456677899999999999999887642  23332211            


Q ss_pred             CCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEee
Q psy13076         91 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE  170 (423)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  170 (423)
                                         ...+.+|+++++.. ..+..|...+....|||||+++|.. .+..+.+|+..+++......
T Consensus        91 -------------------~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~  149 (470)
T d2bgra1          91 -------------------TASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITW  149 (470)
T ss_dssp             -------------------EEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCS
T ss_pred             -------------------CceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeee
Confidence                               01233445544443 2355677788899999999999985 57789999987765432211


Q ss_pred             ec-------C---------CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCee
Q psy13076        171 FH-------P---------IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFR  234 (423)
Q Consensus       171 ~~-------~---------~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  234 (423)
                      ..       .         ..+....+.|||||+.++....+......+........    ...........+...+   
T Consensus       150 ~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~g---  222 (470)
T d2bgra1         150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE----SLQYPKTVRVPYPKAG---  222 (470)
T ss_dssp             CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST----TCSSCEEEEEECCBTT---
T ss_pred             ccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccC----CCCCCeeeeecccccc---
Confidence            00       0         11234568899999999887543321111111100000    0001111111111111   


Q ss_pred             EEEEeCCCeEEEEcCCCceeeee-----------ccccccCeEEEEECCCCCEEEEEE-ecC-----eEEEEECCCccce
Q psy13076        235 IITGSEDNTIAVFEGPPFKFKMT-----------KQEHSRFVQAVRYSPSGSHFASAG-FDG-----KVFLYDGASADLV  297 (423)
Q Consensus       235 ~~s~s~d~~i~~~~~~~~~~~~~-----------~~~~~~~i~~l~~s~~g~~l~s~s-~dg-----~i~vwd~~~~~~~  297 (423)
                        +.+.+..+.+|+.........           .......+..+.|.++++.++... ..+     .+..+|..++...
T Consensus       223 --~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~  300 (470)
T d2bgra1         223 --AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN  300 (470)
T ss_dssp             --SCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred             --ccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEE
Confidence              112233566666432211100           112234567888999887655432 221     2334455555432


Q ss_pred             ecccc-----------cccCCCeEEEEECCCCCeEEEEeCCCcEEEEec--CCcceeeeeeeCceeEeeEEEEEecCcEE
Q psy13076        298 SELGN-----------PAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI--ETKSAVSEFLMGNQVEDQQVSCLWQGDYL  364 (423)
Q Consensus       298 ~~~~~-----------~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~--~~~~~i~~~~~~~~~~~~~~~~~~~g~~l  364 (423)
                      .....           ..+........+.+++.+++.+..|+..+||.+  ..+.. ..+..+ ......+ ..++++.+
T Consensus       301 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~-~~lt~g-~~~v~~~-~~~d~~~i  377 (470)
T d2bgra1         301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-TFITKG-TWEVIGI-EALTSDYL  377 (470)
T ss_dssp             ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCC-EESCCS-SSCEEEE-EEECSSEE
T ss_pred             EEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCce-eeeccC-CeeEEEE-EEECCCEE
Confidence            21110           011122222222333445667778887766654  33332 222222 2222222 33456655


Q ss_pred             E-EEeCCC------cEEEEecCCCCCceEEe----ccCCCceeEEEecCCCCeEE---EecCCCcEEEeeCC
Q psy13076        365 L-TVSLSG------FISYLDVNNPSTPIRVI----KGHNKPITALALSPDRGTVF---TGSHDGFITRWNAK  422 (423)
Q Consensus       365 ~-~~~~~~------~i~~~~~~~~~~~~~~~----~~h~~~v~~i~~sp~~~~l~---s~s~D~~i~~W~~~  422 (423)
                      . ++...+      .++..++.... ....+    .+|...+.+++||||+++++   ++...-.+++|+..
T Consensus       378 yf~a~~~~~~p~~~~ly~v~~~g~~-~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~  448 (470)
T d2bgra1         378 YYISNEYKGMPGGRNLYKIQLSDYT-KVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV  448 (470)
T ss_dssp             EEEESCGGGCTTCBEEEEEETTCTT-CEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred             EEEEecCCCCcceEEEEEEECCCCC-ceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECC
Confidence            3 333222      24444544332 22332    47888999999999999977   44444557777654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.65  E-value=1.6e-17  Score=151.44  Aligned_cols=336  Identities=10%  Similarity=0.011  Sum_probs=193.6

Q ss_pred             EEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECC
Q psy13076         62 VFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP  141 (423)
Q Consensus        62 l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp  141 (423)
                      ++||+.+|.|++|++.+.+.++.+..          ++|++.........+..+.  ........-..|.-.+....++|
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpV----------fspd~~~g~g~~~es~~vl--~~~~~~~~gd~hhP~~s~t~gtp   81 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPV----------FNVDSATGWGITNESKEIL--GGDQQYLNGDCHHPHISMTDGRY   81 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECS----------SSBCTTTCTTTSHHHHHHH--CSSSCCSCCCBCCCEEEEETTEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEe----------EcCCCCEEEEECCccceEE--ecccccccCcccCCCcceecccC
Confidence            67899999999999999988877642          2333321100000000000  00000011123545566677789


Q ss_pred             CCCEEEEE-ccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee-----------------eEE
Q psy13076        142 SGFYIASG-DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF-----------------GHV  203 (423)
Q Consensus       142 ~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~-----------------~~~  203 (423)
                      ||+++... ..+.+|.++|+.+.+........ .......++|+|+++...+++......                 ...
T Consensus        82 DGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP-~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          82 DGKYLFINDKANTRVARIRLDIMKTDKITHIP-NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECT-TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcEeeEEecC-CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            99999655 56789999999987765443332 245678899999999655543222110                 112


Q ss_pred             EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEec
Q psy13076        204 FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD  283 (423)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d  283 (423)
                      ++.++.+....+... .....++++|++.+.++++...+.+...+.......... ........+.++|+|+++..+ .+
T Consensus       161 iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i-~v~n~p~~~~~~~dGk~~~v~-~~  237 (441)
T d1qnia2         161 IDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWV-VVFNVERIAAAVKAGNFKTIG-DS  237 (441)
T ss_dssp             EETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEE-EEEEHHHHHHHHHTTCCBCCT-TC
T ss_pred             ecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEE-EeCCccceEEEecCCCEEEeC-CC
Confidence            333333333333322 246678999999986666654444333321111100000 000111223457899887654 36


Q ss_pred             CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEE-EEeCCCcEEEEecCCccee--------eeeeeCcee--Ee
Q psy13076        284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL-TASGDKTCKLWDIETKSAV--------SEFLMGNQV--ED  352 (423)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-s~s~d~~i~iwd~~~~~~i--------~~~~~~~~~--~~  352 (423)
                      +.+.+++....+.+..+..  . .....++++|||++++ ++..+++|.+||+.+....        .........  ..
T Consensus       238 ~v~vvd~~~~~~v~~~IPv--g-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgp  314 (441)
T d1qnia2         238 KVPVVDGRGESEFTRYIPV--P-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGP  314 (441)
T ss_dssp             CCCEEECSSSCSSEEEECC--B-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCE
T ss_pred             CcEEEEcccCCceEEEEeC--C-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCc
Confidence            6777777766666666542  2 2356899999999875 5677999999998753211        000000000  01


Q ss_pred             eEEEEEecCcEEEEEeCCCcEEEEecCC---------CCCceEEe-----ccCCCceeEEEecCCCCeEEEe---cCCCc
Q psy13076        353 QQVSCLWQGDYLLTVSLSGFISYLDVNN---------PSTPIRVI-----KGHNKPITALALSPDRGTVFTG---SHDGF  415 (423)
Q Consensus       353 ~~~~~~~~g~~l~~~~~~~~i~~~~~~~---------~~~~~~~~-----~~h~~~v~~i~~sp~~~~l~s~---s~D~~  415 (423)
                      .-..+..+|..+.+...|..+..|++..         ....+.++     .||...+.+.+++|||+||+++   |.|++
T Consensus       315 lh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~  394 (441)
T d1qnia2         315 LHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRF  394 (441)
T ss_dssp             EEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred             ccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccC
Confidence            1122334566667778899999999741         11122223     5899999999999999999999   66754


Q ss_pred             E
Q psy13076        416 I  416 (423)
Q Consensus       416 i  416 (423)
                      +
T Consensus       395 ~  395 (441)
T d1qnia2         395 L  395 (441)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=2.5e-14  Score=130.11  Aligned_cols=287  Identities=7%  Similarity=-0.060  Sum_probs=165.2

Q ss_pred             EEEEeCCE--EE-EEeccc--eEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEe----------cCCCceEEee
Q psy13076         11 SCLWQGDY--LL-TVSLSG--FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG----------SHDGFITRWN   75 (423)
Q Consensus        11 ~~~~~~~~--~~-~~~~dg--~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg----------~~D~~i~vW~   75 (423)
                      +..+||+.  ++ .+..+|  .|++||..+ .+.+.++.++..+  .++|+||++.|+..          +.|++|++||
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~-~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D  102 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAGC-GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD  102 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred             ccCCCCcceeEEeeccCCCcceEEEEeCCC-CcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEE
Confidence            33456664  33 234444  466778765 4566677777655  58999999988764          4588899999


Q ss_pred             cCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc-cCCc
Q psy13076         76 AKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGK  154 (423)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~  154 (423)
                      ..+++....+......                                 ....+  .....++|+|||++++.++ .++.
T Consensus       103 ~~t~~~~~~i~~p~~~---------------------------------~~~~g--~~p~~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_         103 PVTFLPIADIELPDAP---------------------------------RFSVG--PRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             TTTCCEEEEEEETTSC---------------------------------SCCBS--CCTTSEEECTTSSCEEEEECSSSC
T ss_pred             CCCCcEeeeecCCccc---------------------------------eeccc--CCccceEECCCCCEEEEEeCCCCe
Confidence            9987765543211000                                 00000  0112478999999998876 4699


Q ss_pred             EEEEEcCCCceeEEeeecCC-----CCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEec
Q psy13076        155 VRIWDTVNKEHILKNEFHPI-----GGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKP  229 (423)
Q Consensus       155 i~vwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  229 (423)
                      +.+||+.+.+..........     .+....+++++|++.+++............ ..     .....+...+....+.+
T Consensus       148 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~  221 (368)
T d1mdah_         148 AAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV-GA-----QCTGAQNCSSQAAQANY  221 (368)
T ss_dssp             EEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC-CC-----CSCTTSCBCSCCEEETT
T ss_pred             EEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeee-ec-----ccccccccceeeccccc
Confidence            99999988776544332211     112234667777776555433222111000 00     01111222233344444


Q ss_pred             CCCeeEEEEeCCCeEEEEcCCCceee--eeccc----------cccCeEEEEECCCCCEEEEEEecC---------eEEE
Q psy13076        230 SRPFRIITGSEDNTIAVFEGPPFKFK--MTKQE----------HSRFVQAVRYSPSGSHFASAGFDG---------KVFL  288 (423)
Q Consensus       230 ~~~~~~~s~s~d~~i~~~~~~~~~~~--~~~~~----------~~~~i~~l~~s~~g~~l~s~s~dg---------~i~v  288 (423)
                      ++.. +.  ...+.+.+++.......  .....          .......++++|++..++....++         .|.+
T Consensus       222 ~g~~-~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v  298 (368)
T d1mdah_         222 PGML-VW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             TTEE-EE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             CcEE-EE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEE
Confidence            4321 22  22333444432211111  11000          111223578899988766554332         5899


Q ss_pred             EECCCccceecccccccCCCeEEEEECCCCCe--EEEEeCCCcEEEEecCCcceeeeeeeC
Q psy13076        289 YDGASADLVSELGNPAHKGGVYAVAWKPDGTQ--LLTASGDKTCKLWDIETKSAVSEFLMG  347 (423)
Q Consensus       289 wd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~--l~s~s~d~~i~iwd~~~~~~i~~~~~~  347 (423)
                      ||.++++.+..+.   +...+.+++|+|||+.  ++++..|++|++||..+++.+.++..+
T Consensus       299 ~D~~t~~~~~~~~---~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         299 VTASVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EESSSCCEEECCE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             EECCCCcEeEEec---CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence            9999998887764   2345788999999973  466778999999999999988776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=7.7e-13  Score=120.04  Aligned_cols=236  Identities=12%  Similarity=0.046  Sum_probs=131.3

Q ss_pred             EEEECCCCCEEEEEc----------cCCcEEEEEcCCCceeEEeeecCC-----CCCeeEEEECCCCCeEEEEEcCCcee
Q psy13076        136 VAKYSPSGFYIASGD----------ISGKVRIWDTVNKEHILKNEFHPI-----GGPIKDIAWSPDNQRMVVVGEGRERF  200 (423)
Q Consensus       136 ~~~~sp~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~~~~~~~~~~~~  200 (423)
                      .+.|+|||++++..+          .|++|++||..+.+.......+..     ......++|+|||++++++.... ..
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~-~~  147 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS-SA  147 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS-SC
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC-Ce
Confidence            367888888877653          478899999988876654433211     12234689999999998775433 33


Q ss_pred             eEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceee------eeccccccCeEEEEECCCC
Q psy13076        201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFK------MTKQEHSRFVQAVRYSPSG  274 (423)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~------~~~~~~~~~i~~l~~s~~g  274 (423)
                      ..+++..+++....+..+...    .+.|.+...++..+.|+.+..++.......      .....+...+....+.+++
T Consensus       148 v~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  223 (368)
T d1mdah_         148 AAGLSVPGASDDQLTKSASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG  223 (368)
T ss_dssp             EEEEEETTTEEEEEEECSSCC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             EEEEECCCCcEeEEeeccCcc----eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc
Confidence            456777776666555433222    122333334666677887777754322111      1112233344567778887


Q ss_pred             CEEEEEEecCeEEEEECCCccceeccccccc----------CCCeEEEEECCCCCeEEEEeCCC---------cEEEEec
Q psy13076        275 SHFASAGFDGKVFLYDGASADLVSELGNPAH----------KGGVYAVAWKPDGTQLLTASGDK---------TCKLWDI  335 (423)
Q Consensus       275 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~~~i~~l~~~~~~~~l~s~s~d~---------~i~iwd~  335 (423)
                      ..+.+.  ++.+.+++..............+          ......++++|++..++....++         .|.+||.
T Consensus       224 ~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~  301 (368)
T d1mdah_         224 MLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             EEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             EEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence            666543  56666666654443211110111          11123466667666554432221         2445555


Q ss_pred             CCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCCCCe--EEEecCC
Q psy13076        336 ETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGT--VFTGSHD  413 (423)
Q Consensus       336 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~~~~--l~s~s~D  413 (423)
                      .+++.+..+                                            . +...+.+++|+||++.  +++++.|
T Consensus       302 ~t~~~~~~~--------------------------------------------~-~~~~~~~~a~spDG~~~ly~s~~~~  336 (368)
T d1mdah_         302 SVGQTSGPI--------------------------------------------S-NGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             SSCCEEECC--------------------------------------------E-EEEEECEEEECCSSSCEEEEEETTT
T ss_pred             CCCcEeEEe--------------------------------------------c-CCCceeEEEECCCCCEEEEEEeCCC
Confidence            444433221                                            1 2235777888888763  4566778


Q ss_pred             CcEEEeeCCC
Q psy13076        414 GFITRWNAKT  423 (423)
Q Consensus       414 ~~i~~W~~~~  423 (423)
                      +.|++||.+|
T Consensus       337 ~~v~v~D~~t  346 (368)
T d1mdah_         337 EVLDIYDAAS  346 (368)
T ss_dssp             TEEEEEESSS
T ss_pred             CeEEEEECCC
Confidence            8888888754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.50  E-value=5.4e-12  Score=118.32  Aligned_cols=325  Identities=10%  Similarity=0.012  Sum_probs=166.5

Q ss_pred             eeEEEEeCCEEEEEe---------ccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCc
Q psy13076          9 QVSCLWQGDYLLTVS---------LSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTE   79 (423)
Q Consensus         9 ~~~~~~~~~~~~~~~---------~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~   79 (423)
                      .++++|||++||.++         .++.+++||+.+  .....+..|.+.+..+.|||||+.+|.. .|+.+.+|+..++
T Consensus        66 ~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~--~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g  142 (470)
T d2bgra1          66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNL  142 (470)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTS
T ss_pred             eeEECCCCCEEEEEECCcceeeeccCceEEEEECCC--CcccccccCCccccccccccCcceeeEe-ecccceEEECCCC
Confidence            466789999999885         468899999975  3466788999999999999999999885 5678999999887


Q ss_pred             ceeecccCCCC-----------------CCceEEeeCCCCCeEEEec--CCeEEEEecCCCcccccccCCcceEEEEEEC
Q psy13076         80 YIFATLPRTQR-----------------GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYS  140 (423)
Q Consensus        80 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~s  140 (423)
                      ...........                 +..-.+.++|+|+.+++..  ...+..+.+....   ...........+++.
T Consensus       143 ~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~---~~~~~~~~~~~~~~~  219 (470)
T d2bgra1         143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS---DESLQYPKTVRVPYP  219 (470)
T ss_dssp             CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC---STTCSSCEEEEEECC
T ss_pred             ceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeec---cCCCCCCeeeeeccc
Confidence            65443322111                 1112244667776665532  1122222211000   000111122223322


Q ss_pred             CCCCEEEEEccCCcEEEEEcCCCceeEE---eee------cCCCCCeeEEEECCCCCeEEEEEcCC-c-eeeEEEeec--
Q psy13076        141 PSGFYIASGDISGKVRIWDTVNKEHILK---NEF------HPIGGPIKDIAWSPDNQRMVVVGEGR-E-RFGHVFMSE--  207 (423)
Q Consensus       141 p~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~------~~~~~~v~~v~~s~~~~~~~~~~~~~-~-~~~~~~~~~--  207 (423)
                      ..+.    ...+.++.+|++........   ...      ......+..+.|.++++.++...... . ....++..+  
T Consensus       220 ~~g~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~  295 (470)
T d2bgra1         220 KAGA----VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES  295 (470)
T ss_dssp             BTTS----CCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred             cccc----cCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCC
Confidence            2221    12233566666654322110   000      01112245788888887655543222 1 222233222  


Q ss_pred             CCcceecccC------CCc-----ceeEEEEecCCC-eeEEEEeCCCeEEE--EcCCCceeeeeccccccCeEEEEECCC
Q psy13076        208 TGTSVGEISG------QSK-----PINSCDFKPSRP-FRIITGSEDNTIAV--FEGPPFKFKMTKQEHSRFVQAVRYSPS  273 (423)
Q Consensus       208 ~~~~~~~~~~------~~~-----~i~~~~~~~~~~-~~~~s~s~d~~i~~--~~~~~~~~~~~~~~~~~~i~~l~~s~~  273 (423)
                      ++........      ...     ......+.+++. +.+..+..++...+  ++....... .+......|..+ ++++
T Consensus       296 tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~-~lt~g~~~v~~~-~~~d  373 (470)
T d2bgra1         296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGI-EALT  373 (470)
T ss_dssp             TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCE-ESCCSSSCEEEE-EEEC
T ss_pred             CCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCcee-eeccCCeeEEEE-EEEC
Confidence            2221111000      000     011223334333 33455666765544  444332222 222333335444 3334


Q ss_pred             CCEE-EEEEecC------eEEEEECCCccceecc--cccccCCCeEEEEECCCCCeEE---EEeCCCcEEEEecCCccee
Q psy13076        274 GSHF-ASAGFDG------KVFLYDGASADLVSEL--GNPAHKGGVYAVAWKPDGTQLL---TASGDKTCKLWDIETKSAV  341 (423)
Q Consensus       274 g~~l-~s~s~dg------~i~vwd~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~---s~s~d~~i~iwd~~~~~~i  341 (423)
                      ++.+ ++++.++      .|+-.++..+.....+  ....|...+.+++|||||++++   ++...-.+++|+..+++.+
T Consensus       374 ~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v  453 (470)
T d2bgra1         374 SDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGL  453 (470)
T ss_dssp             SSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred             CCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEE
Confidence            4433 3443332      1333344433333222  2235777889999999999987   4444556999999999888


Q ss_pred             eeee
Q psy13076        342 SEFL  345 (423)
Q Consensus       342 ~~~~  345 (423)
                      ..+.
T Consensus       454 ~~le  457 (470)
T d2bgra1         454 RVLE  457 (470)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.37  E-value=1.8e-09  Score=97.21  Aligned_cols=297  Identities=11%  Similarity=0.115  Sum_probs=162.6

Q ss_pred             EEEEEec--cceEEEEeccCCCCceeec----ccccCceeEEEEeCCCCeEEEecCCCceEEeecCCc-ceeecccCCCC
Q psy13076         18 YLLTVSL--SGFISYLDVNNPSTPIRVI----KGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTE-YIFATLPRTQR   90 (423)
Q Consensus        18 ~~~~~~~--dg~i~~~d~~~~~~~~~~~----~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~-~~~~~~~~~~~   90 (423)
                      .|+.|++  .|.|..+..+.....+...    .....++.-|+|+|++++|.+.+. +.+..|.+... .+.........
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~   82 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence            3555654  5688888776544433222    224556778999999999888755 56777765431 12111111112


Q ss_pred             CCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEee
Q psy13076         91 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE  170 (423)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  170 (423)
                      +.++.+..+++++.+....                 ...+...|....+.+++........+...++...     .....
T Consensus        83 ~~p~~v~~~~~~~~~~v~~-----------------a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  140 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLA-----------------AKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKN-----VQNYE  140 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEE-----------------CSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEE-----EEEEE
T ss_pred             CCcEEEEECCCCCEEEEEE-----------------ecCCCCEEEEeEccCCCCcceeEeeeecceecCc-----ccCcc
Confidence            2233344445544321110                 1123445555556655544333332222222111     11111


Q ss_pred             ecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce--ec--ccCCCcceeEEEEecCCCeeEEEEeCCCeEEE
Q psy13076        171 FHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV--GE--ISGQSKPINSCDFKPSRPFRIITGSEDNTIAV  246 (423)
Q Consensus       171 ~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~  246 (423)
                       ......+.++.|+|+|++++++..+.+....+.....+...  ..  ..........+.|+|++++..++.-.+++|.+
T Consensus       141 -~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v  219 (365)
T d1jofa_         141 -YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE  219 (365)
T ss_dssp             -CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             -cCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEE
Confidence             11223467899999999999987766554333222233221  11  12234567889999999987778878999999


Q ss_pred             EcCCCcee--eee-----c------------cccccCeEEEEECCCCCEEEEEEec-C-----eEEEEECCCccceecc-
Q psy13076        247 FEGPPFKF--KMT-----K------------QEHSRFVQAVRYSPSGSHFASAGFD-G-----KVFLYDGASADLVSEL-  300 (423)
Q Consensus       247 ~~~~~~~~--~~~-----~------------~~~~~~i~~l~~s~~g~~l~s~s~d-g-----~i~vwd~~~~~~~~~~-  300 (423)
                      |+....+.  ...     .            .........+.++|+|++|+++... .     .|..|+......+... 
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~  299 (365)
T d1jofa_         220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL  299 (365)
T ss_dssp             EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred             EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe
Confidence            87533211  100     0            0112234578999999998877542 2     3767765443222111 


Q ss_pred             --c-ccccCCCeEEEEECC-CCCeEEEE-eCCCcEEEEecCCc
Q psy13076        301 --G-NPAHKGGVYAVAWKP-DGTQLLTA-SGDKTCKLWDIETK  338 (423)
Q Consensus       301 --~-~~~~~~~i~~l~~~~-~~~~l~s~-s~d~~i~iwd~~~~  338 (423)
                        . .........+++++| +|++|+++ ..+++|.+|++...
T Consensus       300 ~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence              0 011223457899998 78977666 56789999987654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.37  E-value=1.3e-11  Score=112.02  Aligned_cols=225  Identities=14%  Similarity=0.071  Sum_probs=137.4

Q ss_pred             CCCCCeEEEe--cCCeEEEEecCCCccccccc-CCcceEEEEEECCCCC--EEEEEccCC-----------------cEE
Q psy13076         99 DPKGKNFLYT--NGNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGF--YIASGDISG-----------------KVR  156 (423)
Q Consensus        99 ~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~-~h~~~i~~~~~sp~~~--~l~s~~~d~-----------------~i~  156 (423)
                      .|+|+.++..  .++.+.++++++.+...++. .+...++.++|+|+|+  |++..+.+.                 .+.
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~  159 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT  159 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEE
Confidence            4556555443  24566677776666555543 3456788889999888  555544332                 234


Q ss_pred             EEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCcee-------------eEE--------------------
Q psy13076        157 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERF-------------GHV--------------------  203 (423)
Q Consensus       157 vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~-------------~~~--------------------  203 (423)
                      .+|..+.+.......   .+....++|+|+|+++++.+...+..             ..+                    
T Consensus       160 ~iD~~t~~v~~qI~v---~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~  236 (441)
T d1qnia2         160 AIDAETMDVAWQVIV---DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD  236 (441)
T ss_dssp             EEETTTCSEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             eecCccceeeEEEec---CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCC
Confidence            567666554433322   24567899999999998876442211             000                    


Q ss_pred             ------EeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCcee--------eeeccc---cccCeE
Q psy13076        204 ------FMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKF--------KMTKQE---HSRFVQ  266 (423)
Q Consensus       204 ------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~--------~~~~~~---~~~~i~  266 (423)
                            ........+..+.. .+....+.++|++.+.++++..++++.+||......        ......   ..-...
T Consensus       237 ~~v~vvd~~~~~~v~~~IPv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgpl  315 (441)
T d1qnia2         237 SKVPVVDGRGESEFTRYIPV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPL  315 (441)
T ss_dssp             CCCCEEECSSSCSSEEEECC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEE
T ss_pred             CCcEEEEcccCCceEEEEeC-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcc
Confidence                  00111112222222 234578999999999889999999999999643221        001111   111235


Q ss_pred             EEEECCCCCEEEEEEecCeEEEEECCCc---------c-ceecc---cccccCCCeEEEEECCCCCeEEEEeCC
Q psy13076        267 AVRYSPSGSHFASAGFDGKVFLYDGASA---------D-LVSEL---GNPAHKGGVYAVAWKPDGTQLLTASGD  327 (423)
Q Consensus       267 ~l~~s~~g~~l~s~s~dg~i~vwd~~~~---------~-~~~~~---~~~~~~~~i~~l~~~~~~~~l~s~s~d  327 (423)
                      ..+|+++|..+.+...|.+|..|++...         . .+..+   -..+|...+.+.+++|||+||++++.-
T Consensus       316 h~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~  389 (441)
T d1qnia2         316 HTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKF  389 (441)
T ss_dssp             EEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESC
T ss_pred             cceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcc
Confidence            5689999988888889999999996321         1 11111   113676666778899999999999543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.25  E-value=7.7e-09  Score=92.93  Aligned_cols=265  Identities=12%  Similarity=0.169  Sum_probs=143.1

Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcc
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTS  211 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      ..++.++|+|+++++.+... +.+..|.+....................++++++++.+.++.....             
T Consensus        40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~-------------  105 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQP-------------  105 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSST-------------
T ss_pred             CCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCC-------------
Confidence            34556899999999988765 5677887654332322222223344567788899886654432211             


Q ss_pred             eecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEe-cCeEEEEE
Q psy13076        212 VGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGF-DGKVFLYD  290 (423)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~-dg~i~vwd  290 (423)
                             ...+....+.+.+.. ......+....+..    ............+-++.|+|+|++++++.. ...|.+|+
T Consensus       106 -------~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~  173 (365)
T d1jofa_         106 -------PYAVYANPFYKFAGY-GNVFSVSETGKLEK----NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHR  173 (365)
T ss_dssp             -------TCCEEEEEESSSCCE-EEEEEECTTCCEEE----EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             -------CCEEEEeEccCCCCc-ceeEeeeecceecC----cccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEE
Confidence                   011111112221111 00000000000000    000000111223568999999998888764 45788887


Q ss_pred             CCC-ccce--ecccccccCCCeEEEEECCCCCeEEE-EeCCCcEEEEecCCcceeeeeeeC------------------c
Q psy13076        291 GAS-ADLV--SELGNPAHKGGVYAVAWKPDGTQLLT-ASGDKTCKLWDIETKSAVSEFLMG------------------N  348 (423)
Q Consensus       291 ~~~-~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~s-~s~d~~i~iwd~~~~~~i~~~~~~------------------~  348 (423)
                      ... +...  ..............++|+|+++++.. .-.+++|.+|++...+........                  .
T Consensus       174 ~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (365)
T d1jofa_         174 KLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG  253 (365)
T ss_dssp             ECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred             ccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccc
Confidence            543 2221  11111122456889999999998755 456889999998765432211100                  0


Q ss_pred             eeEeeEEEEEecCcEEEEEeC-C-----CcEEEEecCCCCCceEE-----eccCCCceeEEEecC-CCCeEEE-ecCCCc
Q psy13076        349 QVEDQQVSCLWQGDYLLTVSL-S-----GFISYLDVNNPSTPIRV-----IKGHNKPITALALSP-DRGTVFT-GSHDGF  415 (423)
Q Consensus       349 ~~~~~~~~~~~~g~~l~~~~~-~-----~~i~~~~~~~~~~~~~~-----~~~h~~~v~~i~~sp-~~~~l~s-~s~D~~  415 (423)
                      ......+.+.++|++|.++.. +     ..+..++..........     .......-+.++++| +|++|+. ...++.
T Consensus       254 ~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~  333 (365)
T d1jofa_         254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             cCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCe
Confidence            112334666789999876532 2     23666666543322111     112334567899998 7897754 467899


Q ss_pred             EEEeeCC
Q psy13076        416 ITRWNAK  422 (423)
Q Consensus       416 i~~W~~~  422 (423)
                      |.+|+.+
T Consensus       334 v~v~~~~  340 (365)
T d1jofa_         334 LEIYRWK  340 (365)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999753

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=7.2e-08  Score=82.23  Aligned_cols=201  Identities=13%  Similarity=0.084  Sum_probs=114.2

Q ss_pred             CCcceEEEEEECCCCCEEEEEccCC---cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEe
Q psy13076        129 EHSCAVNVAKYSPSGFYIASGDISG---KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFM  205 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~  205 (423)
                      .+...+.+-+|||||+.||-.....   .+.+.+........   .....+......|+|+|+.++..............
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~  112 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  112 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE---EeeeecccccceecCCCCeeeEeeecCCccceeec
Confidence            3455677889999999998754432   35555655444322   22234567789999999999887654433322222


Q ss_pred             ecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE--cCCCceeeeeccccccCeEEEEECCCCCEEEEEEec
Q psy13076        206 SETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF--EGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFD  283 (423)
Q Consensus       206 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~--~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~d  283 (423)
                      .....................+++.+....++...++...+|  +....... .............|+|+|+.++..+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~  191 (269)
T d2hqsa1         113 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN  191 (269)
T ss_dssp             ETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred             ccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEEEeec
Confidence            222222222222333334455666666666666666644444  33322211 122233445678899999998887765


Q ss_pred             C---eEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCC---CcEEEEecCC
Q psy13076        284 G---KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGD---KTCKLWDIET  337 (423)
Q Consensus       284 g---~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d---~~i~iwd~~~  337 (423)
                      +   .+.+.+...+.. ..+   .+........|+|||++|+-.+..   ..+.++++..
T Consensus       192 ~~~~~i~~~~~~~~~~-~~~---~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         192 GGQQHIAKQDLATGGV-QVL---SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             SSCEEEEEEETTTCCE-EEC---CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             CCceeeeEeecccccc-eEe---ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            5   344555554433 222   234556788999999988754432   2344555443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.1e-07  Score=81.15  Aligned_cols=238  Identities=14%  Similarity=0.167  Sum_probs=133.9

Q ss_pred             eEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCC-ceEEe--ecCCcceeecccCCCCCCceEEeeCCCCC
Q psy13076         27 FISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDG-FITRW--NAKTEYIFATLPRTQRGQPIVLGGDPKGK  103 (423)
Q Consensus        27 ~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~-~i~vW--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (423)
                      .|++-|.+ +..+. .+..+.+.+.+-+|||||+.||-...+. .-.+|  +..++.                       
T Consensus        20 ~l~i~d~d-G~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-----------------------   74 (269)
T d2hqsa1          20 ELRVSDYD-GYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-----------------------   74 (269)
T ss_dssp             EEEEEETT-SCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-----------------------
T ss_pred             EEEEEcCC-CCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc-----------------------
Confidence            57777765 33444 4445577888999999999987543322 21222  222111                       


Q ss_pred             eEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc-CCcEEEEEcCCCceeEEeeecCCCCCeeEEE
Q psy13076        104 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIGGPIKDIA  182 (423)
Q Consensus       104 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~  182 (423)
                                          ...+..+........|+|+|+.++.... ++...++............ ...........
T Consensus        75 --------------------~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  133 (269)
T d2hqsa1          75 --------------------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPT  133 (269)
T ss_dssp             --------------------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEE
T ss_pred             --------------------eeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceee-eeccccccccc
Confidence                                1122334456677889999998876553 3333333322221111111 11122334556


Q ss_pred             ECCCCCeEEEEEcCCceeeEEEeec-CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEE--cCCCceeeeecc
Q psy13076        183 WSPDNQRMVVVGEGRERFGHVFMSE-TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVF--EGPPFKFKMTKQ  259 (423)
Q Consensus       183 ~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~--~~~~~~~~~~~~  259 (423)
                      +++++..++......... .++... .......+...........++|++..++......+...+|  +.........  
T Consensus       134 ~~~~~~~~~~~~~~~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~--  210 (269)
T d2hqsa1         134 WFPDSQNLAFTSDQAGRP-QVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL--  210 (269)
T ss_dssp             ECTTSSEEEEEECTTSSC-EEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC--
T ss_pred             cccccccceecccccCCc-eEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEe--
Confidence            788887777665433322 222222 2222333444455667788999999877776666655554  4333332222  


Q ss_pred             ccccCeEEEEECCCCCEEEEEEec---CeEEEEECCCccceecccccccCCCeEEEEECC
Q psy13076        260 EHSRFVQAVRYSPSGSHFASAGFD---GKVFLYDGASADLVSELGNPAHKGGVYAVAWKP  316 (423)
Q Consensus       260 ~~~~~i~~l~~s~~g~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~  316 (423)
                      ..........|+|||+.|+..+..   ..|.+++...+.. ..+.  ...+.+...+|+|
T Consensus       211 ~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt--~~~g~~~~p~WSP  267 (269)
T d2hqsa1         211 SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLP--ATDGQVKFPAWSP  267 (269)
T ss_dssp             CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECC--CSSSEEEEEEECC
T ss_pred             ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEe--CCCCcEEeEEeCC
Confidence            233445678999999998766654   3688899876553 3443  2456678899998

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=8.3e-07  Score=76.07  Aligned_cols=242  Identities=10%  Similarity=0.058  Sum_probs=149.8

Q ss_pred             eEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC----CCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC
Q psy13076        133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP----IGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET  208 (423)
Q Consensus       133 ~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~  208 (423)
                      ....++++|+|+++++-.....|++||.+ ++.+.......    .......+++.++....+++..........+. ..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc-cc
Confidence            45789999999988887778899999964 34332221110    01123455655554444444333222222222 23


Q ss_pred             Ccceeccc-CCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeee--ccccccCeEEEEECCCCCEEEEEEecCe
Q psy13076        209 GTSVGEIS-GQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMT--KQEHSRFVQAVRYSPSGSHFASAGFDGK  285 (423)
Q Consensus       209 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~l~s~s~dg~  285 (423)
                      +.....+. ........+++.+++.. +++....+.+.+++... +....  ...+......+++.++|..+++....+.
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i-~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRI-IVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCE-EEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             ccceeecCCCcccccceeccccCCcE-EEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccc
Confidence            33333332 23445677888887764 45555566777887443 22222  2345566788999999998888888999


Q ss_pred             EEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecCCcceeeeeeeCce-eEeeEEEEEecCcE
Q psy13076        286 VFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIETKSAVSEFLMGNQ-VEDQQVSCLWQGDY  363 (423)
Q Consensus       286 i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~i~~~~~~~~-~~~~~~~~~~~g~~  363 (423)
                      |.+||. +++.+.++...+......+++++|+|+.+++-+. ++.|.+|+. +++.+.++..... .....+++.++|..
T Consensus       180 V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l  257 (279)
T d1q7fa_         180 VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV  257 (279)
T ss_dssp             EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             eeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence            999995 4565656544445566889999999998877544 457999984 5766666543221 12345566677764


Q ss_pred             EEEEeCCCcEEEEecCCC
Q psy13076        364 LLTVSLSGFISYLDVNNP  381 (423)
Q Consensus       364 l~~~~~~~~i~~~~~~~~  381 (423)
                       +.++.+..|++|..++.
T Consensus       258 -~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         258 -VLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             -EEEETTTEEEEEECSCC
T ss_pred             -EEEeCCCeEEEEEeeee
Confidence             44567888999987663

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=7.5e-07  Score=76.38  Aligned_cols=239  Identities=12%  Similarity=0.106  Sum_probs=132.3

Q ss_pred             ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC--CC---CceEEee-CCCCCeEEEec--CCeEEEEecCC
Q psy13076         49 PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ--RG---QPIVLGG-DPKGKNFLYTN--GNSVIIRNIEN  120 (423)
Q Consensus        49 ~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~--~~---~~~~~~~-~~~~~~~~~~~--~~~~~i~~~~~  120 (423)
                      .-..++++++++++++-...+.|++||.+. ..+..+....  .+   .+.-+.. +..+..++...  ...+...+.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            356899999999888877889999999764 3333332111  11   1112222 22333333332  2344444443 


Q ss_pred             Ccccccc-cCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCce
Q psy13076        121 PAISDIY-TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRER  199 (423)
Q Consensus       121 ~~~~~~~-~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~  199 (423)
                      +.....+ .........+++.++|.++++....+.+.+++.. ++.+..............+++.++             
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~-------------  167 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK-------------  167 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS-------------
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeeccc-------------
Confidence            3333322 2344566778888888777766655656665532 221111111111122233333333             


Q ss_pred             eeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeec--cccccCeEEEEECCCCCEE
Q psy13076        200 FGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTK--QEHSRFVQAVRYSPSGSHF  277 (423)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~--~~~~~~i~~l~~s~~g~~l  277 (423)
                                                     +. ++++....+.|.+|+.... ...+.  .+.......+++.|+|+.+
T Consensus       168 -------------------------------g~-i~v~d~~~~~V~~~d~~G~-~~~~~g~~g~~~~P~giavD~~G~i~  214 (279)
T d1q7fa_         168 -------------------------------QE-IFISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEIL  214 (279)
T ss_dssp             -------------------------------SE-EEEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEE
T ss_pred             -------------------------------ee-EEeeeccccceeeeecCCc-eeeeecccccccCCcccccccCCeEE
Confidence                                           32 2333444455555553321 11111  2234456789999999977


Q ss_pred             EEEEe-cCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCc
Q psy13076        278 ASAGF-DGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETK  338 (423)
Q Consensus       278 ~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~  338 (423)
                      ++-.. ++.|.+|+ .+++.+..+...........|++.|+|++++ +..++.|++|.....
T Consensus       215 Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         215 IADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             EEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence            76544 44689998 4577665554333334678999999997655 457899999998764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.03  E-value=1.8e-07  Score=81.34  Aligned_cols=237  Identities=11%  Similarity=0.052  Sum_probs=136.9

Q ss_pred             eEEEEeCCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCC
Q psy13076         10 VSCLWQGDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQ   89 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~   89 (423)
                      +|+.+||+++++...++.|+.+|...   ....+......+.+++|+++++++++...++.+..|+.....-        
T Consensus        33 iAv~pdG~l~vt~~~~~~I~~i~p~g---~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~--------  101 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEVGEIVSITPDG---NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG--------  101 (302)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTC---CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS--------
T ss_pred             EEECCCCCEEEEeCCCCEEEEEeCCC---CEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc--------
Confidence            67888899988888889888887643   2334555667888999999999888888888888877543210        


Q ss_pred             CCCceEEeeCCCCCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe
Q psy13076         90 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN  169 (423)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~  169 (423)
                        ..                   ..+-+.          ......+.+.+.++++++++-+.++.+..++..........
T Consensus       102 --~~-------------------~~~~~~----------~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~  150 (302)
T d2p4oa1         102 --TV-------------------ETLLTL----------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL  150 (302)
T ss_dssp             --CE-------------------EEEEEC----------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             --ce-------------------eecccc----------CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEe
Confidence              00                   000000          11234677889999999888888888887776554322111


Q ss_pred             eecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcC
Q psy13076        170 EFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEG  249 (423)
Q Consensus       170 ~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~  249 (423)
                      .-....                                    ...........+.+.+.  +....++.+..+.|..++.
T Consensus       151 ~~~~~~------------------------------------~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~  192 (302)
T d2p4oa1         151 EHPMLA------------------------------------RSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPV  192 (302)
T ss_dssp             ECGGGS------------------------------------CSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEB
T ss_pred             cCCccc------------------------------------eeeccCccccccccccc--CCceeeecCCCCeEEeccc
Confidence            000000                                    00000011122233332  2334555566667766653


Q ss_pred             CCceee--eeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEE---CCCCCeEEEE
Q psy13076        250 PPFKFK--MTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAW---KPDGTQLLTA  324 (423)
Q Consensus       250 ~~~~~~--~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~---~~~~~~l~s~  324 (423)
                      ......  ............++++++|.++++...++.|..++.. ++..........-...++++|   ++|++.|..+
T Consensus       193 ~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         193 DSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             CTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             cccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence            321111  0011112334569999999988888888999998754 332211111122345789999   6677877655


Q ss_pred             eCC
Q psy13076        325 SGD  327 (423)
Q Consensus       325 s~d  327 (423)
                      +..
T Consensus       272 t~~  274 (302)
T d2p4oa1         272 TNG  274 (302)
T ss_dssp             ECT
T ss_pred             CCC
Confidence            443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=7.4e-07  Score=82.24  Aligned_cols=329  Identities=12%  Similarity=0.098  Sum_probs=171.0

Q ss_pred             eCCEEEEEeccceEEEEeccCCCCceeeccc---ccCceeEEEEeCCCCeEEEe---------cCCCceEEeecCCccee
Q psy13076         15 QGDYLLTVSLSGFISYLDVNNPSTPIRVIKG---HNKPITALALSPDRGTVFTG---------SHDGFITRWNAKTEYIF   82 (423)
Q Consensus        15 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~g---h~~~V~~l~~~~~~~~l~sg---------~~D~~i~vW~~~~~~~~   82 (423)
                      |+.++.. ..+|.|.++|+.++...+ .+..   ..-.+....||||++.++..         +..+.+.++|++++...
T Consensus        27 ~~~~~~~-~~~g~i~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~  104 (465)
T d1xfda1          27 DTEFIYR-EQKGTVRLWNVETNTSTV-LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ  104 (465)
T ss_dssp             SSCBCCC-CSSSCEEEBCGGGCCCEE-EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE
T ss_pred             CCcEEEE-eCCCcEEEEECCCCCEEE-EEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee
Confidence            6666654 567899999998654422 2322   23467788999999986654         34567788899887643


Q ss_pred             ecccCC-CCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccccc-CCcce-----------------EEEEEECCCC
Q psy13076         83 ATLPRT-QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT-EHSCA-----------------VNVAKYSPSG  143 (423)
Q Consensus        83 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~h~~~-----------------i~~~~~sp~~  143 (423)
                      ...... ..+..-...++|+|+.+++..++.+.+.+..++...+... +-...                 -..+.|||||
T Consensus       105 ~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDg  184 (465)
T d1xfda1         105 SLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG  184 (465)
T ss_dssp             ECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS
T ss_pred             eccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCC
Confidence            322111 1122223678999999999888888888776554433221 21111                 1467799999


Q ss_pred             CEEEEEccC-CcEEEEE---------------------------------cCCCceeEEeee----cCCCCCeeEEEECC
Q psy13076        144 FYIASGDIS-GKVRIWD---------------------------------TVNKEHILKNEF----HPIGGPIKDIAWSP  185 (423)
Q Consensus       144 ~~l~s~~~d-~~i~vwd---------------------------------~~~~~~~~~~~~----~~~~~~v~~v~~s~  185 (423)
                      ++||....| ..+..+.                                 ++.+........    .....-+..+.|+|
T Consensus       185 k~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~  264 (465)
T d1xfda1         185 TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT  264 (465)
T ss_dssp             SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS
T ss_pred             CeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcC
Confidence            999987643 3343333                                 221111000000    00001145788999


Q ss_pred             CCCeEEEEEcCCce--eeEEEeecCCcceecccC-CCcc----eeEEEEecCCCee-EEEEe-CC--CeEEEEcC---C-
Q psy13076        186 DNQRMVVVGEGRER--FGHVFMSETGTSVGEISG-QSKP----INSCDFKPSRPFR-IITGS-ED--NTIAVFEG---P-  250 (423)
Q Consensus       186 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~----i~~~~~~~~~~~~-~~s~s-~d--~~i~~~~~---~-  250 (423)
                      +++.++....-...  ...+++..++........ ....    -....|+|++... ++..+ .+  +.+..+..   . 
T Consensus       265 d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~  344 (465)
T d1xfda1         265 STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP  344 (465)
T ss_dssp             SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred             CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccc
Confidence            98866554432222  233344444443322211 1111    1234577776542 22222 12  22332211   0 


Q ss_pred             --CceeeeeccccccCeEE-EEECCCCCEEE-EEEecC----eEEEEECCCccceecccc-cccCCCeEEEEECCCCCeE
Q psy13076        251 --PFKFKMTKQEHSRFVQA-VRYSPSGSHFA-SAGFDG----KVFLYDGASADLVSELGN-PAHKGGVYAVAWKPDGTQL  321 (423)
Q Consensus       251 --~~~~~~~~~~~~~~i~~-l~~s~~g~~l~-s~s~dg----~i~vwd~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l  321 (423)
                        ..+....+....=.|.. +.|+++++.+. ++..++    .++--++..+.....+.. ........++.|||+++++
T Consensus       345 ~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~  424 (465)
T d1xfda1         345 NSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFF  424 (465)
T ss_dssp             CSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEE
T ss_pred             cCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEE
Confidence              01111111111222333 46888877653 444432    233333332222221110 1233456789999999998


Q ss_pred             EEEeCC---CcEEEEecCCcceeeeee
Q psy13076        322 LTASGD---KTCKLWDIETKSAVSEFL  345 (423)
Q Consensus       322 ~s~s~d---~~i~iwd~~~~~~i~~~~  345 (423)
                      +-.+..   -.+.+++..+++.+..+.
T Consensus       425 v~~~s~~~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         425 LLKCEGPGVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             EEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred             EEEeecCCCCeEEEEECCCCCEEEEEc
Confidence            854433   457888887777666553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.00  E-value=1.7e-07  Score=81.55  Aligned_cols=208  Identities=12%  Similarity=0.042  Sum_probs=117.4

Q ss_pred             ceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEecCCCccccccc
Q psy13076         49 PITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT  128 (423)
Q Consensus        49 ~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  128 (423)
                      .+..++++|||+++++...+++|..|+.+....                                            .+.
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--------------------------------------------~~~   64 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--------------------------------------------IHA   64 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--------------------------------------------EEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--------------------------------------------EEE
Confidence            477899999999999999999888877543210                                            011


Q ss_pred             CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEE-eeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec
Q psy13076        129 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK-NEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE  207 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      .....+.+++|+|+|+++++...++.+.+++......... ............+++.+++..++..... ..   ++..+
T Consensus        65 ~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~-~~---i~~~~  140 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYR-GA---IWLID  140 (302)
T ss_dssp             ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTT-TE---EEEEE
T ss_pred             cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeecccc-cc---ceeee
Confidence            1234678899999999988888888888887654332111 1112223456778888887654432211 11   11110


Q ss_pred             CCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEE
Q psy13076        208 TGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVF  287 (423)
Q Consensus       208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~  287 (423)
                                           +.          .+...++....................+.++. +.++++.+..+.|.
T Consensus       141 ---------------------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         141 ---------------------VV----------QPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLL  188 (302)
T ss_dssp             ---------------------TT----------TTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEE
T ss_pred             ---------------------cc----------CCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEE
Confidence                                 00          11111111000000000111122345555543 23555666788888


Q ss_pred             EEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecC
Q psy13076        288 LYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIE  336 (423)
Q Consensus       288 vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~  336 (423)
                      .++....................+++++++|++.++...+++|..++..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         189 RIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             EEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             eccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            8887654333222111123345679999999988888888888888754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.96  E-value=1.3e-06  Score=76.06  Aligned_cols=202  Identities=8%  Similarity=0.062  Sum_probs=122.0

Q ss_pred             EEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEe-eecCC-CCCeeEEEECCCCCeEEEEEcCC-----------cee
Q psy13076        134 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN-EFHPI-GGPIKDIAWSPDNQRMVVVGEGR-----------ERF  200 (423)
Q Consensus       134 i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~-~~~v~~v~~s~~~~~~~~~~~~~-----------~~~  200 (423)
                      -..+.|.+++..++.++....|...+.......... ..... -...+.+++.++|...++-....           ...
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            467889999988877777777888886544322110 10100 01257899999998766532211           112


Q ss_pred             eEEEeecCCcceecccCCCcceeEEEEecCCC----eeEEEEeCCCeEEEEcCCC-ceee-----eecc-ccccCeEEEE
Q psy13076        201 GHVFMSETGTSVGEISGQSKPINSCDFKPSRP----FRIITGSEDNTIAVFEGPP-FKFK-----MTKQ-EHSRFVQAVR  269 (423)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~s~s~d~~i~~~~~~~-~~~~-----~~~~-~~~~~i~~l~  269 (423)
                      +.++..........+.......+.++|+|++.    .+.++-+..+.|..|+... ....     .... ........++
T Consensus       153 G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia  232 (314)
T d1pjxa_         153 GSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             ceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeE
Confidence            33443332212222222223456788888754    3455566778888886421 1111     1111 1122356789


Q ss_pred             ECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC-eEEEEeCCCcEEEEecCC
Q psy13076        270 YSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-QLLTASGDKTCKLWDIET  337 (423)
Q Consensus       270 ~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~s~s~d~~i~iwd~~~  337 (423)
                      +.++|++.++....+.|.+||...++....+..  ....+.+++|.|+++ ++++.+.++.|..+++..
T Consensus       233 vD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            999999888777789999999887765554432  235678999999997 556777788888888754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.90  E-value=1.5e-06  Score=75.94  Aligned_cols=230  Identities=13%  Similarity=0.056  Sum_probs=136.4

Q ss_pred             eeCCCCCeEEEe-cCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccC--Cc--EEEEEcCCCceeEEeee
Q psy13076         97 GGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS--GK--VRIWDTVNKEHILKNEF  171 (423)
Q Consensus        97 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d--~~--i~vwd~~~~~~~~~~~~  171 (423)
                      .++++|++++.. .+..+..++.+++.....+.........++++|||+++++...+  ..  +...+............
T Consensus        46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~  125 (319)
T d2dg1a1          46 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED  125 (319)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccC
Confidence            456666655443 24556666666655555555555667899999999987765432  23  33444333332211111


Q ss_pred             cCCCCCeeEEEECCCCCeEEEEEcCC--ceeeEEEeecC-CcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEc
Q psy13076        172 HPIGGPIKDIAWSPDNQRMVVVGEGR--ERFGHVFMSET-GTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFE  248 (423)
Q Consensus       172 ~~~~~~v~~v~~s~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~  248 (423)
                      .......+.+++.|+|...++-....  ...+.++.... +..+..+.......+.++|+|++..+.++-+..+.|..|+
T Consensus       126 ~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d  205 (319)
T d2dg1a1         126 LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIA  205 (319)
T ss_dssp             SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             CCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEE
Confidence            12234567899999998665432211  11233333322 2333333333345678999999987667777888999987


Q ss_pred             CCCc----eeee----eccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccc----ccCCCeEEEEECC
Q psy13076        249 GPPF----KFKM----TKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNP----AHKGGVYAVAWKP  316 (423)
Q Consensus       249 ~~~~----~~~~----~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~~~~~i~~l~~~~  316 (423)
                      ....    ....    ...........+++.++|.+.++....+.|.+|+. +++.+.++..+    .+...+++++|.|
T Consensus       206 ~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~  284 (319)
T d2dg1a1         206 LEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP  284 (319)
T ss_dssp             ECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred             EcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeC
Confidence            4321    1100    01111122457999999998888888899999995 67777665433    2344578999999


Q ss_pred             CCCeEEEEeCC
Q psy13076        317 DGTQLLTASGD  327 (423)
Q Consensus       317 ~~~~l~s~s~d  327 (423)
                      ++..|++...+
T Consensus       285 ~~~~~~~t~~~  295 (319)
T d2dg1a1         285 GTNQLIICSND  295 (319)
T ss_dssp             TSCEEEEEEEC
T ss_pred             CCCEEEEEcCC
Confidence            88777665543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=9.9e-07  Score=74.71  Aligned_cols=195  Identities=12%  Similarity=0.036  Sum_probs=119.6

Q ss_pred             eEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcce
Q psy13076        133 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSV  212 (423)
Q Consensus       133 ~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (423)
                      ....+++++++.+.++....+.+++++-.+......  .. .......+++.++++.+++- ..... ...+........
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~--~~-~~~~p~~iavd~~g~i~v~d-~~~~~-~~~~~~~~~~~~  132 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP--FD-GLNYPEGLAVDTQGAVYVAD-RGNNR-VVKLAAGSKTQT  132 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC--CC-SCCSEEEEEECTTCCEEEEE-GGGTE-EEEECTTCSSCE
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee--ee-eeeecccccccccceeEeec-ccccc-ccccccccceee
Confidence            346788999999888877777777765444332211  11 12346789999998765442 22221 122222221111


Q ss_pred             ecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECC
Q psy13076        213 GEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGA  292 (423)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~  292 (423)
                      ............+++.|++.. +++...++.|..++...................++++++|.++++-...+.|..++..
T Consensus       133 ~~~~~~~~~p~~i~~~~~g~~-~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         133 VLPFTGLNDPDGVAVDNSGNV-YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             ECCCCSCCSCCEEEECTTCCE-EEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred             eeeecccCCcceeeecCCCCE-eeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCC
Confidence            111122345567888888764 6666777889989865433332223344556889999999888877778889888754


Q ss_pred             CccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEec
Q psy13076        293 SADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDI  335 (423)
Q Consensus       293 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~  335 (423)
                      ... ...+.. ..-....+|+++++|+.+++-..++.|+.++.
T Consensus       212 ~~~-~~~~~~-~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         212 STT-STVLPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CSC-CEECCC-CSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CCe-EEEEcc-CCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            432 222221 12345689999999998888777777776654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.6e-06  Score=76.78  Aligned_cols=341  Identities=10%  Similarity=0.089  Sum_probs=171.3

Q ss_pred             EEEeCCCCeEEEecCCCceEEeecCCcceeecccCC--CCCCceEEeeCCCCCeEEEecC----------CeEEEEecCC
Q psy13076         53 LALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT--QRGQPIVLGGDPKGKNFLYTNG----------NSVIIRNIEN  120 (423)
Q Consensus        53 l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~  120 (423)
                      ..|.+++.++.. ..||.|.+||.+++.....+...  ..-......++|+++.+++..+          ....+.++++
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            468888876654 46789999999876532222211  1123334568899988776432          3567788887


Q ss_pred             Cccccccc--CCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCC-----------------CCeeEE
Q psy13076        121 PAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG-----------------GPIKDI  181 (423)
Q Consensus       121 ~~~~~~~~--~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------------~~v~~v  181 (423)
                      +.......  .....+....|||||+.+|-.. ++.|.+.+...+...... ..+..                 ..-..+
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt-~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEe-cccCcceeeccccchhhhhhhccccceE
Confidence            76554432  2334556678999999998765 567777776554432211 11111                 112467


Q ss_pred             EECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee-----
Q psy13076        182 AWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM-----  256 (423)
Q Consensus       182 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~-----  256 (423)
                      -|||||+.++....+..............      .....+....+...+..     .....+.+++........     
T Consensus       179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~------~~~p~~~~~~Yp~~G~~-----np~~~l~v~d~~~~~~~~~~~~~  247 (465)
T d1xfda1         179 WWSPDGTRLAYAAINDSRVPIMELPTYTG------SIYPTVKPYHYPKAGSE-----NPSISLHVIGLNGPTHDLEMMPP  247 (465)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEECCCSS------SSSCCCEEEECCBTTSC-----CCEEEEEEEESSSSCCCEECCCC
T ss_pred             EECCCCCeEEEEEecccccceeecccccc------cccceeeeeeccccCCC-----CCceeEEEEecCCCcEEEEEecc
Confidence            89999999988653322211111111100      00011122222211110     011235555543222111     


Q ss_pred             -eccccccCeEEEEECCCCCEEEEEEe-c---CeEEEEECCCccceecccccccCCCe----EEEEECCCCCeEE--EEe
Q psy13076        257 -TKQEHSRFVQAVRYSPSGSHFASAGF-D---GKVFLYDGASADLVSELGNPAHKGGV----YAVAWKPDGTQLL--TAS  325 (423)
Q Consensus       257 -~~~~~~~~i~~l~~s~~g~~l~s~s~-d---g~i~vwd~~~~~~~~~~~~~~~~~~i----~~l~~~~~~~~l~--s~s  325 (423)
                       ........+..+.|+|++++++.... +   ..+.++|..+++....... ...++|    ....|+|+|+.++  ..+
T Consensus       248 ~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e-~~~~wv~~~~~~p~~~~dg~~~~fi~~s  326 (465)
T d1xfda1         248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-ESEAWLHRQNEEPVFSKDGRKFFFIRAI  326 (465)
T ss_dssp             CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-ECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred             CcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE-cCCceEeccCCceeEccCCCeeEEEEee
Confidence             01123345788999999986655432 2   2577889888875433321 122322    2467899998542  222


Q ss_pred             -CCC--cEEEEecC------CcceeeeeeeCceeEeeE-EEEEecCcEEE-EEeCC----CcEEEEecCCCCCceEEe--
Q psy13076        326 -GDK--TCKLWDIE------TKSAVSEFLMGNQVEDQQ-VSCLWQGDYLL-TVSLS----GFISYLDVNNPSTPIRVI--  388 (423)
Q Consensus       326 -~d~--~i~iwd~~------~~~~i~~~~~~~~~~~~~-~~~~~~g~~l~-~~~~~----~~i~~~~~~~~~~~~~~~--  388 (423)
                       .++  .+...++.      .++.+..+..+ ...... .....+++.|. ++...    ..++..++...... ..+  
T Consensus       327 e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G-~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~-~~lt~  404 (465)
T d1xfda1         327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSG-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR-QCLSC  404 (465)
T ss_dssp             CCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC-BCSST
T ss_pred             eecccCceEEEEeccccccCCCceeEEeccC-CceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcc-eeecc
Confidence             222  23333321      12222222211 111111 22333555554 33322    13444444432211 111  


Q ss_pred             -ccCCCceeEEEecCCCCeEEEe
Q psy13076        389 -KGHNKPITALALSPDRGTVFTG  410 (423)
Q Consensus       389 -~~h~~~v~~i~~sp~~~~l~s~  410 (423)
                       ........++.|||++++++-.
T Consensus       405 ~~~~~~~~~~~~~S~~~~y~v~~  427 (465)
T d1xfda1         405 DLVENCTYFSASFSHSMDFFLLK  427 (465)
T ss_dssp             TSSSSCCCCEEEECTTSSEEEEE
T ss_pred             ccCCCCCEEEEEECCCCCEEEEE
Confidence             1334457799999999998743

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=9.8e-06  Score=68.34  Aligned_cols=236  Identities=11%  Similarity=0.007  Sum_probs=134.5

Q ss_pred             ceeEEEEeCCCCeEEE-ecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecCCeEEEEe-cCCCccccc
Q psy13076         49 PITALALSPDRGTVFT-GSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRN-IENPAISDI  126 (423)
Q Consensus        49 ~V~~l~~~~~~~~l~s-g~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~  126 (423)
                      .-..|+++++|.+.++ .+..+.+..++......... .......+.-++.+++|..++....+.+.... ..+......
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-ccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            3468999999996555 55667777776654332211 11122233445667888877766555444333 222222222


Q ss_pred             ccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEee
Q psy13076        127 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMS  206 (423)
Q Consensus       127 ~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~  206 (423)
                      . ........+++.+++++.++-.....+..++........ ..... ......+++.|++..+++. ..... ...+..
T Consensus        94 ~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~-~~~p~~i~~~~~g~~~v~~-~~~~~-i~~~d~  168 (260)
T d1rwia_          94 F-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTG-LNDPDGVAVDNSGNVYVTD-TDNNR-VVKLEA  168 (260)
T ss_dssp             C-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-CCCCS-CCSCCEEEECTTCCEEEEE-GGGTE-EEEECT
T ss_pred             e-eeeeecccccccccceeEeeccccccccccccccceeee-eeecc-cCCcceeeecCCCCEeeec-ccccc-cccccc
Confidence            2 223457889999999988876666777777765433211 11111 1345789999998854443 22222 223333


Q ss_pred             cCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeE
Q psy13076        207 ETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKV  286 (423)
Q Consensus       207 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i  286 (423)
                      +.................+++.+++.. .++....+.|..++...................++++++|.++++-..+++|
T Consensus       169 ~~~~~~~~~~~~~~~p~gi~~d~~g~l-~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI  247 (260)
T d1rwia_         169 ESNNQVVLPFTDITAPWGIAVDEAGTV-YVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  247 (260)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTTCCE-EEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             ccceeeeeeccccCCCccceeeeeeee-eeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEE
Confidence            322222222244456778899988763 6666667788888644332222222333456889999999887776677778


Q ss_pred             EEEEC
Q psy13076        287 FLYDG  291 (423)
Q Consensus       287 ~vwd~  291 (423)
                      +.++.
T Consensus       248 ~~i~~  252 (260)
T d1rwia_         248 VKLTS  252 (260)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            77664

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.76  E-value=1.3e-05  Score=69.53  Aligned_cols=113  Identities=11%  Similarity=0.057  Sum_probs=73.8

Q ss_pred             CeEEEEECCCCC-----eEEEEeCCCcEEEEecCCcceeeeee------eCceeEeeEEEEEecCcEEEEEeCCCcEEEE
Q psy13076        308 GVYAVAWKPDGT-----QLLTASGDKTCKLWDIETKSAVSEFL------MGNQVEDQQVSCLWQGDYLLTVSLSGFISYL  376 (423)
Q Consensus       308 ~i~~l~~~~~~~-----~l~s~s~d~~i~iwd~~~~~~i~~~~------~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~  376 (423)
                      ....++|+|++.     +.++-+..+.|..||+.....+....      .........+.+..+|...++....+.|.++
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            346899988764     45555778889988876443332211      0011112234555678877777788999999


Q ss_pred             ecCCCCCceEEeccCCCceeEEEecCCCC-eEEEecCCCcEEEeeC
Q psy13076        377 DVNNPSTPIRVIKGHNKPITALALSPDRG-TVFTGSHDGFITRWNA  421 (423)
Q Consensus       377 ~~~~~~~~~~~~~~h~~~v~~i~~sp~~~-~l~s~s~D~~i~~W~~  421 (423)
                      +..... ....+.......++++|.||++ +++|.+.+++|...++
T Consensus       253 dp~~g~-~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         253 GPDGGQ-PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CTTCBS-CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             eCCCCE-EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            876543 3344455557789999999997 5578888888877664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.63  E-value=6.5e-05  Score=65.21  Aligned_cols=205  Identities=10%  Similarity=0.069  Sum_probs=118.6

Q ss_pred             EEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeec-CCcce
Q psy13076        134 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSE-TGTSV  212 (423)
Q Consensus       134 i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  212 (423)
                      ...++|.++|++.++-...+.|..|+...++....  ..........++++++|+.+++...+......+.... .+..+
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~--~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEE--EeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            45788999999777777788898888766543221  2223345689999999986665433222222233222 22222


Q ss_pred             eccc---CCCcceeEEEEecCCCeeEEEEeC------CCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEE-EEEEe
Q psy13076        213 GEIS---GQSKPINSCDFKPSRPFRIITGSE------DNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHF-ASAGF  282 (423)
Q Consensus       213 ~~~~---~~~~~i~~~~~~~~~~~~~~s~s~------d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~s~s~  282 (423)
                      ..+.   ......+.+.+.+++.+ .++...      .+.+..++....... .....-...+.++|+|+++.| ++-+.
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l-~vtd~~~~~~~~~g~v~~~~~dg~~~~-~~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGF-YFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCE-EEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeeccCCCcccCCcceeEEeccce-eecccccccccCcceeEEEecccceeE-EEeeccceeeeeeeccccceEEEeccc
Confidence            2111   12234677888888864 333211      123444432221111 111222345779999999865 55556


Q ss_pred             cCeEEEEECCCc-cceecc-----cccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeee
Q psy13076        283 DGKVFLYDGASA-DLVSEL-----GNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSE  343 (423)
Q Consensus       283 dg~i~vwd~~~~-~~~~~~-----~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~  343 (423)
                      .+.|..|++... ......     ...........++++++|++.++....+.|.+||. .++.+.+
T Consensus       198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~  263 (319)
T d2dg1a1         198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQ  263 (319)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEE
T ss_pred             CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEE
Confidence            889999987532 211111     00111234678999999999898888999999995 5665544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.45  E-value=3.6e-05  Score=65.04  Aligned_cols=52  Identities=17%  Similarity=0.100  Sum_probs=40.1

Q ss_pred             EEEEe--CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEe
Q psy13076         11 SCLWQ--GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTG   65 (423)
Q Consensus        11 ~~~~~--~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg   65 (423)
                      .++||  |+.+|-. .+|.|++.|+.. . ..+.|..+.+.+...+|||||+.||-.
T Consensus         5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~-g-~~~~Lt~~~~~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCDDLWEHDLKS-G-STRKIVSNLGVINNARFFPDGRKIAIR   58 (281)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEEEETTT-C-CEEEEECSSSEEEEEEECTTSSEEEEE
T ss_pred             ccCCCCCCCEEEEE-eCCcEEEEECCC-C-CEEEEecCCCcccCEEECCCCCEEEEE
Confidence            46799  9999976 467888889864 3 344666677788999999999987743

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.35  E-value=1.1e-05  Score=68.40  Aligned_cols=96  Identities=14%  Similarity=0.222  Sum_probs=63.7

Q ss_pred             CCC--CCeEEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEcc-C---C--cEEEEEcCCCceeEEee
Q psy13076         99 DPK--GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-S---G--KVRIWDTVNKEHILKNE  170 (423)
Q Consensus        99 ~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~-d---~--~i~vwd~~~~~~~~~~~  170 (423)
                      +|+  |+.+++...+.+.+.++++++... ++.+...+...+|||||+.||-... +   .  .|.+.+...++......
T Consensus         7 sPdi~G~~v~f~~~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~   85 (281)
T d1k32a2           7 NPDIHGDRIIFVCCDDLWEHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY   85 (281)
T ss_dssp             EEEEETTEEEEEETTEEEEEETTTCCEEE-EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC
T ss_pred             CCCCCCCEEEEEeCCcEEEEECCCCCEEE-EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee
Confidence            466  888888887888888998887654 5666777888999999999986532 2   2  35566665554322110


Q ss_pred             e----cCCCCCeeEEEECCCCCeEEEEEc
Q psy13076        171 F----HPIGGPIKDIAWSPDNQRMVVVGE  195 (423)
Q Consensus       171 ~----~~~~~~v~~v~~s~~~~~~~~~~~  195 (423)
                      .    ...........|+|+|+.++....
T Consensus        86 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          86 FSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             cCCCccCccccccccccCCCCCEEEEEEc
Confidence            0    011123467889999998877543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.28  E-value=0.0007  Score=57.65  Aligned_cols=205  Identities=13%  Similarity=0.091  Sum_probs=126.7

Q ss_pred             CCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeec--CCCCCeeEEEECCCC
Q psy13076        110 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH--PIGGPIKDIAWSPDN  187 (423)
Q Consensus       110 ~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~  187 (423)
                      +..+..++++++..... . ....+.++.+.++|.++++. . ..+.++|..+++........  .....++++.+.|+|
T Consensus        39 ~~~I~r~d~~~g~~~~~-~-~~~~~~~i~~~~dg~l~va~-~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G  114 (295)
T d2ghsa1          39 ERELHELHLASGRKTVH-A-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG  114 (295)
T ss_dssp             GTEEEEEETTTTEEEEE-E-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred             CCEEEEEECCCCeEEEE-E-CCCCcEEEEEecCCCEEEEE-e-CccEEeecccceeeEEeeeecCCCcccceeeEECCCC
Confidence            45566666666543321 1 22357788888998877764 3 45888998877643222111  122357889999999


Q ss_pred             CeEEEEEcCCc--eeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCc--------eeeee
Q psy13076        188 QRMVVVGEGRE--RFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPF--------KFKMT  257 (423)
Q Consensus       188 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~--------~~~~~  257 (423)
                      ...+.......  ..+.++....+. +..+.......+.+.+++++..+.++-+..+.|..|+....        .....
T Consensus       115 ~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~  193 (295)
T d2ghsa1         115 ALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID  193 (295)
T ss_dssp             CEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             CEEEEeccccccccceeEeeecCCc-EEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEec
Confidence            87766543221  123344433333 22222333456788999999887788888899988864211        11111


Q ss_pred             ccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEEC-CCCCeEE
Q psy13076        258 KQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWK-PDGTQLL  322 (423)
Q Consensus       258 ~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~  322 (423)
                      ..........+++.++|.+.++.-..+.|..|| .+++.+..+..+.  ..+++++|- |+.+.|.
T Consensus       194 ~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~--~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         194 STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPG--KQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             CTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSC--SBEEEEEEESTTSCEEE
T ss_pred             cCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCC--CceEEEEEeCCCCCEEE
Confidence            222344567889999998777666678899999 4677777765432  458999995 5665554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.74  E-value=0.0091  Score=50.42  Aligned_cols=215  Identities=13%  Similarity=0.053  Sum_probs=125.7

Q ss_pred             CCEEEEEeccceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCC--CCC-C
Q psy13076         16 GDYLLTVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRT--QRG-Q   92 (423)
Q Consensus        16 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~--~~~-~   92 (423)
                      |.+..+=-..+.|+.||..++.  ..++. ....+.++++.+++.+++++ .+ .+..+|.++++........  ... .
T Consensus        30 ~~l~wvDi~~~~I~r~d~~~g~--~~~~~-~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~  104 (295)
T d2ghsa1          30 GTAWWFNILERELHELHLASGR--KTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNR  104 (295)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTE--EEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred             CEEEEEECCCCEEEEEECCCCe--EEEEE-CCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCccc
Confidence            4444444466888888887543  22222 24578899999998877764 44 5888999988653322211  111 1


Q ss_pred             ceEEeeCCCCCeEEEecC-----CeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEE-EccCCcEEEEEcCCCce-
Q psy13076         93 PIVLGGDPKGKNFLYTNG-----NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS-GDISGKVRIWDTVNKEH-  165 (423)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s-~~~d~~i~vwd~~~~~~-  165 (423)
                      .--+..+++|+.++....     ..-.++.+.++.....+.+. ..-+.+.|+|+++.+.. -+..+.|..+++..... 
T Consensus       105 ~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~-~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~  183 (295)
T d2ghsa1         105 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI-SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL  183 (295)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE-SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred             ceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc-CCcceeeecCCCceEEEeecccceeeEeeecccccc
Confidence            223457888887776421     23345555556555444332 34578899999987654 44567888888643211 


Q ss_pred             -----eEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEe-cCCCeeEEEEe
Q psy13076        166 -----ILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFK-PSRPFRIITGS  239 (423)
Q Consensus       166 -----~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~s~s  239 (423)
                           ..........+....+++.++|...++.-.+..  ...++. .++.+..+......+++++|- |+...+++|..
T Consensus       184 ~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~--V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         184 PTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA--VDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             BSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE--EEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             cccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc--eEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence                 111122223345678899999876554433321  233343 466666666555568888886 45555556544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.62  E-value=0.018  Score=50.37  Aligned_cols=158  Identities=10%  Similarity=0.046  Sum_probs=88.0

Q ss_pred             ceeeEEEE-eCCEEEEEecc-----c------eEEEEeccCCCCce-eec-ccccCceeEEEEeCCCCeEEEecCC-Cce
Q psy13076          7 DQQVSCLW-QGDYLLTVSLS-----G------FISYLDVNNPSTPI-RVI-KGHNKPITALALSPDRGTVFTGSHD-GFI   71 (423)
Q Consensus         7 ~~~~~~~~-~~~~~~~~~~d-----g------~i~~~d~~~~~~~~-~~~-~gh~~~V~~l~~~~~~~~l~sg~~D-~~i   71 (423)
                      -++.++.. ||+.++.++.+     +      .+.+||+.++.-.. ..+ ..|..-....++.+++.+++.|+.+ .++
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            34567775 78888887753     1      37789987654321 122 2344445567888999999998765 689


Q ss_pred             EEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEecC-------CeEEEEecCCCccccc---------ccCCcc---
Q psy13076         72 TRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTNG-------NSVIIRNIENPAISDI---------YTEHSC---  132 (423)
Q Consensus        72 ~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~---------~~~h~~---  132 (423)
                      .+||..+..-...-..........+...++|+.++....       +.+.++++.+......         ...+..   
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence            999988764322111111111123344557777776432       3577787765432211         011110   


Q ss_pred             --eEEEEEECCCCCEEEEEccCCcEEEEEcCCCc
Q psy13076        133 --AVNVAKYSPSGFYIASGDISGKVRIWDTVNKE  164 (423)
Q Consensus       133 --~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~  164 (423)
                        .-..+..-++|+.+..+..++.+.+++..+..
T Consensus       181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             ccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence              00112234567777777766666666665543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.022  Score=47.03  Aligned_cols=236  Identities=13%  Similarity=0.165  Sum_probs=131.6

Q ss_pred             cceEEEEeccCCCCceeecccccCceeEEEEeCCCCeEEEecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCe
Q psy13076         25 SGFISYLDVNNPSTPIRVIKGHNKPITALALSPDRGTVFTGSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKN  104 (423)
Q Consensus        25 dg~i~~~d~~~~~~~~~~~~gh~~~V~~l~~~~~~~~l~sg~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (423)
                      ...+.+.|+.++..+.+.-.    .-.+.-.+|..+.||--+ ..++.++|++++..++...-..  ..+.+.|-.+ ..
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi----~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e--~VvfWkWis~-~~  115 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISL-NT  115 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS--CCCEEEESSS-SE
T ss_pred             CceEEEEECCCCCcceeccc----chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC--CcEEEEecCC-CE
Confidence            35888999988777654322    223566788888776655 4689999999987776654322  2344454433 34


Q ss_pred             EEEecCCeEEEEecCCC-cccccccCCc----ceEEEEEECCCCCEEEEEc---c----CCcEEEEEcCCCceeEEeeec
Q psy13076        105 FLYTNGNSVIIRNIENP-AISDIYTEHS----CAVNVAKYSPSGFYIASGD---I----SGKVRIWDTVNKEHILKNEFH  172 (423)
Q Consensus       105 ~~~~~~~~~~i~~~~~~-~~~~~~~~h~----~~i~~~~~sp~~~~l~s~~---~----d~~i~vwd~~~~~~~~~~~~~  172 (423)
                      +..-.+..+.-|+++.. ...++|..|.    ..|-.-+.+++.+.++-.+   .    .|.+++|..+.+....   +.
T Consensus       116 L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~---ie  192 (327)
T d1utca2         116 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---IE  192 (327)
T ss_dssp             EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE---EC
T ss_pred             EEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcc---cc
Confidence            55567788999999642 4566666664    5677788899999876543   1    3678899887653221   12


Q ss_pred             CCCCCeeEEEEC--CCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCC
Q psy13076        173 PIGGPIKDIAWS--PDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGP  250 (423)
Q Consensus       173 ~~~~~v~~v~~s--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~  250 (423)
                      ++.+....+.+.  +....+++.+.....-+.+...+.+..                 |.+..    .-.-+.+-+    
T Consensus       193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~-----------------~~g~~----~f~kk~vdi----  247 (327)
T d1utca2         193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP-----------------PTGNQ----PFPKKAVDV----  247 (327)
T ss_dssp             CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCC-----------------CTTCC----CCCCEEEEC----
T ss_pred             ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCC-----------------ccCCC----CCcceeEEE----
Confidence            211111111111  111122222110000011111111100                 00000    000000000    


Q ss_pred             CceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecc
Q psy13076        251 PFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSEL  300 (423)
Q Consensus       251 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~  300 (423)
                          ....+...++..++..|+.-..+..-+.-|.|.++|+.++..+..-
T Consensus       248 ----~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~n  293 (327)
T d1utca2         248 ----FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  293 (327)
T ss_dssp             ----CCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ----ECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEe
Confidence                1122334566778999998888999999999999999999877543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.37  E-value=0.0037  Score=54.69  Aligned_cols=169  Identities=12%  Similarity=0.168  Sum_probs=90.2

Q ss_pred             EEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecC---------------eEEEEE------------------
Q psy13076        244 IAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDG---------------KVFLYD------------------  290 (423)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg---------------~i~vwd------------------  290 (423)
                      +...|....+...+.... .....+.++|+|+++++.+.+.               .+.+++                  
T Consensus       175 ~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            455666666655443322 2345689999999998887542               233333                  


Q ss_pred             -----CCCc---cceecccccccCCCeEEEEECCCCCeEEEEeC-CCcEEEEecCCccee-------ee-eeeCceeEee
Q psy13076        291 -----GASA---DLVSELGNPAHKGGVYAVAWKPDGTQLLTASG-DKTCKLWDIETKSAV-------SE-FLMGNQVEDQ  353 (423)
Q Consensus       291 -----~~~~---~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~-d~~i~iwd~~~~~~i-------~~-~~~~~~~~~~  353 (423)
                           .+..   ..+..+..   ......+.++|||+++++++. +.++.++|++.-...       +. ........--
T Consensus       254 V~VVD~~~~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg  330 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  330 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred             ceeecccccCCcceeEEEec---CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence                 2211   01111110   122457899999999887655 889999998743211       00 0011111122


Q ss_pred             EEEEEecCcE--EEEEeCCCcEEEEecCCC---------CCceEEe-----ccCCCceeEEEecCCCCeEEEec---CCC
Q psy13076        354 QVSCLWQGDY--LLTVSLSGFISYLDVNNP---------STPIRVI-----KGHNKPITALALSPDRGTVFTGS---HDG  414 (423)
Q Consensus       354 ~~~~~~~g~~--l~~~~~~~~i~~~~~~~~---------~~~~~~~-----~~h~~~v~~i~~sp~~~~l~s~s---~D~  414 (423)
                      .+...++|+-  ..+.-.|.++..|++...         ...+.++     .||......-...|||++|++..   .|+
T Consensus       331 PLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~skdr  410 (459)
T d1fwxa2         331 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR  410 (459)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred             ccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEeccccccc
Confidence            2333445543  344458999999997431         1222233     23432222223478999998863   455


Q ss_pred             cE
Q psy13076        415 FI  416 (423)
Q Consensus       415 ~i  416 (423)
                      .+
T Consensus       411 fl  412 (459)
T d1fwxa2         411 FL  412 (459)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.34  E-value=0.0024  Score=55.85  Aligned_cols=189  Identities=12%  Similarity=0.119  Sum_probs=112.0

Q ss_pred             CCCeEEEec--CCeEEEEecCCCcccccccC-CcceEEEEEECC--CCCEEEEEccCC------------------cEEE
Q psy13076        101 KGKNFLYTN--GNSVIIRNIENPAISDIYTE-HSCAVNVAKYSP--SGFYIASGDISG------------------KVRI  157 (423)
Q Consensus       101 ~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~-h~~~i~~~~~sp--~~~~l~s~~~d~------------------~i~v  157 (423)
                      +|+.++..+  ..++.+-+++.-+..++..- -...++.++..+  +-.|++..+.+.                  .+..
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            566655543  45777777777666554432 234567777654  556887766532                  3567


Q ss_pred             EEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCc-------------eeeEEEeec--------------CCc
Q psy13076        158 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRE-------------RFGHVFMSE--------------TGT  210 (423)
Q Consensus       158 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~-------------~~~~~~~~~--------------~~~  210 (423)
                      .|.++.+........   +....++++|+|+++++.+...+             .+..++.+.              .+.
T Consensus       178 ID~~tm~V~~QV~V~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         178 VDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EecCCceEEEEeeeC---CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            787776655544432   34567999999999988764322             111222210              000


Q ss_pred             -----------ceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee-----------eccccccCeEEE
Q psy13076        211 -----------SVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM-----------TKQEHSRFVQAV  268 (423)
Q Consensus       211 -----------~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~-----------~~~~~~~~i~~l  268 (423)
                                 .........+....+.++|++.+.++++..+.++.++|...+.-..           ...+..-.....
T Consensus       255 ~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht  334 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT  334 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEE
T ss_pred             eeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccc
Confidence                       0000111123456789999999999999999999999865321100           000112234567


Q ss_pred             EECCCCCEEEEEEecCeEEEEECC
Q psy13076        269 RYSPSGSHFASAGFDGKVFLYDGA  292 (423)
Q Consensus       269 ~~s~~g~~l~s~s~dg~i~vwd~~  292 (423)
                      +|+.+|.-..+---|.+|.-|++.
T Consensus       335 ~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         335 AFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEHH
T ss_pred             ccCCCceEEEEeeccceEEEEecc
Confidence            888888544444469999999974

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.24  E-value=0.071  Score=49.32  Aligned_cols=52  Identities=17%  Similarity=0.180  Sum_probs=41.2

Q ss_pred             CCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc-EEEEEe
Q psy13076        317 DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD-YLLTVS  368 (423)
Q Consensus       317 ~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~-~l~~~~  368 (423)
                      .+.+++.++.|+.++-+|.++++.+-++..........++...+|+ |+++..
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence            4668888999999999999999999888877776666777777886 444433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.70  E-value=0.22  Score=45.70  Aligned_cols=82  Identities=11%  Similarity=0.221  Sum_probs=55.4

Q ss_pred             CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc-
Q psy13076        284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD-  362 (423)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~-  362 (423)
                      |.+.-||..+++...+.....+.   .+=.+.-.+.+++.++.|+.++-+|..+++.+-++..........++...+|+ 
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~---~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHW---NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSC---CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCC---CCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            45677788887776554332221   11112335678889999999999999999999888777666666666667886 


Q ss_pred             EEEEEe
Q psy13076        363 YLLTVS  368 (423)
Q Consensus       363 ~l~~~~  368 (423)
                      +|+..+
T Consensus       515 yv~v~a  520 (560)
T d1kv9a2         515 YVAIMA  520 (560)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            444443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.12  Score=42.38  Aligned_cols=234  Identities=9%  Similarity=-0.073  Sum_probs=127.6

Q ss_pred             EEEecCCeEEEEecCCCcccccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEEEcCCCce--eEEeeecCCCCCeeEE
Q psy13076        105 FLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVNKEH--ILKNEFHPIGGPIKDI  181 (423)
Q Consensus       105 ~~~~~~~~~~i~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vwd~~~~~~--~~~~~~~~~~~~v~~v  181 (423)
                      ++++.++.++..+++++....... ....+..+.|++..+.+.-.+ .++.|..-++.....  ............+..+
T Consensus         4 Ll~s~~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~gl   82 (266)
T d1ijqa1           4 LFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL   82 (266)
T ss_dssp             EEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             EEEECCCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceE
Confidence            556666677777777665555444 334567899998777776554 455666655532111  1111111112345678


Q ss_pred             EECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEe-CCCeEEEEcCCCceeeeeccc
Q psy13076        182 AWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGS-EDNTIAVFEGPPFKFKMTKQE  260 (423)
Q Consensus       182 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s-~d~~i~~~~~~~~~~~~~~~~  260 (423)
                      ++.+.+..+..+...... ..+...+.......+......+..+++.|...++..+.. ..+.|...+............
T Consensus        83 AvD~~~~~lY~~d~~~~~-I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1          83 AVDWIHSNIYWTDSVLGT-VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             EEETTTTEEEEEETTTTE-EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             EEeeccceEEEEecCCCE-EEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc
Confidence            888877777665544332 233333333333334444556788888887776565542 233454444332222222223


Q ss_pred             cccCeEEEEECCCCCEEEEE-EecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcc
Q psy13076        261 HSRFVQAVRYSPSGSHFASA-GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKS  339 (423)
Q Consensus       261 ~~~~i~~l~~s~~g~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~  339 (423)
                      .-.....+++++.++.|.-+ ...+.|...++...................++++. ++....+-..++.|...+..+++
T Consensus       162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCc
Confidence            33456889999887765554 45678888887543322222111222345678776 34455554566777777766665


Q ss_pred             ee
Q psy13076        340 AV  341 (423)
Q Consensus       340 ~i  341 (423)
                      ..
T Consensus       241 ~~  242 (266)
T d1ijqa1         241 DV  242 (266)
T ss_dssp             CC
T ss_pred             ce
Confidence            43

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.65  E-value=0.25  Score=45.51  Aligned_cols=52  Identities=15%  Similarity=0.215  Sum_probs=40.4

Q ss_pred             CCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc-EEEEEe
Q psy13076        317 DGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD-YLLTVS  368 (423)
Q Consensus       317 ~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~-~l~~~~  368 (423)
                      .|.++++++.|+.++.+|.++++.+-++..........++...+|+ ||+..+
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~  539 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV  539 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence            5778889999999999999999999888776655555666667886 444433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.58  E-value=0.14  Score=41.85  Aligned_cols=234  Identities=9%  Similarity=-0.019  Sum_probs=127.3

Q ss_pred             eEEEecCCeEEEEecCCCccc-----ccccCCcceEEEEEECCCCCEEEEEc-cCCcEEEEEcCCCceeEEeeecCCCCC
Q psy13076        104 NFLYTNGNSVIIRNIENPAIS-----DIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVNKEHILKNEFHPIGGP  177 (423)
Q Consensus       104 ~~~~~~~~~~~i~~~~~~~~~-----~~~~~h~~~i~~~~~sp~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~  177 (423)
                      .++++.++.+.--.++.....     ..+..+...+..++|.+..+.+.-.+ .++.|+..++........  .......
T Consensus         3 fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v--~~~~~~~   80 (263)
T d1npea_           3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI--IRQDLGS   80 (263)
T ss_dssp             EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE--ECTTCCC
T ss_pred             EEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEE--EEecccc
Confidence            345555555554454433222     12333445677899998777666554 457788877765432211  1111245


Q ss_pred             eeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCe--EEEEcCCCceee
Q psy13076        178 IKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNT--IAVFEGPPFKFK  255 (423)
Q Consensus       178 v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~--i~~~~~~~~~~~  255 (423)
                      +..+++..-+..+..+...... ......+.......+......+..+++.|...++..+-...+.  |...+.......
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~-I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~  159 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDR-IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             ccEEEEeccCCeEEEeccCCCE-EEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence            6788888777766665443332 2233333222212222334567889999988876666443333  333332222211


Q ss_pred             eeccccccCeEEEEECCCCCEEEEE-EecCeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEe
Q psy13076        256 MTKQEHSRFVQAVRYSPSGSHFASA-GFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWD  334 (423)
Q Consensus       256 ~~~~~~~~~i~~l~~s~~g~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd  334 (423)
                      ......-.....+++++.++.|.-+ ...+.|...+.........+..   .....+|++. ++....+-...+.|...|
T Consensus       160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~---~~~P~~lav~-~~~lYwtd~~~~~I~~~~  235 (263)
T d1npea_         160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY-GKNLYYTDWKTNSVIAMD  235 (263)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC---CCCcEEEEEE-CCEEEEEECCCCEEEEEE
Confidence            1122223456789999887766554 4567888888765433222221   1234678875 444455555677888888


Q ss_pred             cCCcceeeee
Q psy13076        335 IETKSAVSEF  344 (423)
Q Consensus       335 ~~~~~~i~~~  344 (423)
                      ..+++.+..+
T Consensus       236 ~~~g~~~~~~  245 (263)
T d1npea_         236 LAISKEMDTF  245 (263)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCccceEE
Confidence            8877665544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.41  E-value=0.36  Score=44.58  Aligned_cols=81  Identities=15%  Similarity=0.154  Sum_probs=55.9

Q ss_pred             CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcE
Q psy13076        284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY  363 (423)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~  363 (423)
                      |.|.-||..+++...+...   ...+.+=.++..|.+++.|+.|+.++-+|.++++.+-++..........++...+|+.
T Consensus       453 G~l~A~D~~TG~~~W~~~~---~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceEEEEeCCCCceecccCC---CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence            5677788888876654321   1111111123357788889999999999999999998887776666667777778864


Q ss_pred             -EEEE
Q psy13076        364 -LLTV  367 (423)
Q Consensus       364 -l~~~  367 (423)
                       |+..
T Consensus       530 Yvav~  534 (596)
T d1w6sa_         530 YVAIY  534 (596)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.02  E-value=0.093  Score=44.88  Aligned_cols=181  Identities=13%  Similarity=0.143  Sum_probs=91.1

Q ss_pred             eEEEEeCCEEEEEec------------cceEEEEeccCCCCceeecccccCce-------eEEEE--eCCCC-eEEEe--
Q psy13076         10 VSCLWQGDYLLTVSL------------SGFISYLDVNNPSTPIRVIKGHNKPI-------TALAL--SPDRG-TVFTG--   65 (423)
Q Consensus        10 ~~~~~~~~~~~~~~~------------dg~i~~~d~~~~~~~~~~~~gh~~~V-------~~l~~--~~~~~-~l~sg--   65 (423)
                      |++.+||..+++++.            .|.|.++|++.+......++-..+..       ..+..  .++++ +|+..  
T Consensus        40 i~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH  119 (340)
T d1v04a_          40 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  119 (340)
T ss_dssp             EEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             EEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEec
Confidence            677788888887642            39999999876544443333211111       22222  34454 34443  


Q ss_pred             -cCCCceEEeecCCcc--ee--ecccCCCC--CCceEEeeCCCCCeEEEec----------------CCeEEEEecCCCc
Q psy13076         66 -SHDGFITRWNAKTEY--IF--ATLPRTQR--GQPIVLGGDPKGKNFLYTN----------------GNSVIIRNIENPA  122 (423)
Q Consensus        66 -~~D~~i~vW~~~~~~--~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~  122 (423)
                       ....+|.++++....  +.  ..+.....  -+.+++.  .++..++...                .....++..+.+.
T Consensus       120 ~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~--~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         120 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             cCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe--cCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence             245677777764321  11  11111110  1122222  2344333311                0122333333333


Q ss_pred             ccccccCCcceEEEEEECCCCCEEEEE-ccCCcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEE
Q psy13076        123 ISDIYTEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV  193 (423)
Q Consensus       123 ~~~~~~~h~~~i~~~~~sp~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~  193 (423)
                      .. +....-...+.++++||+++|+.+ ...+.|++|++...............+....+.+.+++..+.++
T Consensus       198 ~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         198 VR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             eE-EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            22 222223457889999999877554 45688999998754433333333345666778887654444433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.38  E-value=0.073  Score=46.19  Aligned_cols=112  Identities=13%  Similarity=0.047  Sum_probs=65.9

Q ss_pred             EECCCCCEEEEEEecC-----------eEEEEECCCccceecc-cccccCCCeEEEEECCCCCeEEEEeCC-CcEEEEec
Q psy13076        269 RYSPSGSHFASAGFDG-----------KVFLYDGASADLVSEL-GNPAHKGGVYAVAWKPDGTQLLTASGD-KTCKLWDI  335 (423)
Q Consensus       269 ~~s~~g~~l~s~s~dg-----------~i~vwd~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~s~s~d-~~i~iwd~  335 (423)
                      ....+|+.++.|+.+.           .+.+||..+++-.... ....+.....+.++.++|+.++.|+.+ .++.+||.
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~  105 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDS  105 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEG
T ss_pred             EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecC
Confidence            3445666666666421           3678998876532211 111233334567889999999998765 58999999


Q ss_pred             CCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCC------CcEEEEecCC
Q psy13076        336 ETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLS------GFISYLDVNN  380 (423)
Q Consensus       336 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~------~~i~~~~~~~  380 (423)
                      .+..-...-...............+|+.++.+...      ..+.+||..+
T Consensus       106 ~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         106 SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             GGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            87654322111112222234445688888877542      2478888765

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.35  E-value=0.58  Score=38.43  Aligned_cols=129  Identities=14%  Similarity=0.173  Sum_probs=86.0

Q ss_pred             CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcE
Q psy13076        284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDY  363 (423)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~  363 (423)
                      .+|.+.|+.......+....+     .+.-.+|..+.|+.-+ ..++.+||+++++.++.+....+.-...|.   +.+.
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~A-----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWi---s~~~  115 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI---SLNT  115 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECCC-----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEES---SSSE
T ss_pred             ceEEEEECCCCCcceecccch-----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEec---CCCE
Confidence            468888887765433222111     3566789998888766 568999999999999888776653222211   3444


Q ss_pred             EEEEeCCCcEEEEecCCCCCceEEeccCCC----ceeEEEecCCCCeEEEec---CC----CcEEEeeCC
Q psy13076        364 LLTVSLSGFISYLDVNNPSTPIRVIKGHNK----PITALALSPDRGTVFTGS---HD----GFITRWNAK  422 (423)
Q Consensus       364 l~~~~~~~~i~~~~~~~~~~~~~~~~~h~~----~v~~i~~sp~~~~l~s~s---~D----~~i~~W~~~  422 (423)
                      |+.. .+..++.|++.....|.+.+.-|..    .|..-.-+++.+|++-.|   .|    |.+.+|+.+
T Consensus       116 L~lV-T~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e  184 (327)
T d1utca2         116 VALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD  184 (327)
T ss_dssp             EEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             EEEE-cCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec
Confidence            4433 4567999999766678888776654    577788899999976443   23    445556543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.28  E-value=1.9  Score=39.27  Aligned_cols=83  Identities=18%  Similarity=0.099  Sum_probs=47.8

Q ss_pred             CCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccccCCCeEEEEECCCCC-
Q psy13076        241 DNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGT-  319 (423)
Q Consensus       241 d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-  319 (423)
                      .+.|.-+|..+.+...+........... ++-.|.++++|+.||.++-+|.++|+.+.+....+.... .-+.|..+|+ 
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a-~P~ty~~dGkq  520 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKFAAWGGT-LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG-SPMTYSFKGKQ  520 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS-CCEEEEETTEE
T ss_pred             cccEEEeccCCCceeeEcCCCCCCCcce-eEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCcee-cceEEEECCEE
Confidence            3567777776666554433221111111 111355777899999999999999999877654321111 1245555774 


Q ss_pred             eEEEEe
Q psy13076        320 QLLTAS  325 (423)
Q Consensus       320 ~l~s~s  325 (423)
                      |++...
T Consensus       521 Yi~v~~  526 (571)
T d2ad6a1         521 YIGSMY  526 (571)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            665543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.01  E-value=2.2  Score=38.95  Aligned_cols=81  Identities=21%  Similarity=0.293  Sum_probs=56.7

Q ss_pred             CeEEEEECCCccceecccccccCCCeEEEEECCCCCeEEEEeCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCc-
Q psy13076        284 GKVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLLTASGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGD-  362 (423)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~s~s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~-  362 (423)
                      |.|.=+|..+++...+....   ..+.+=..+..|..+++++.|+.++-+|.++++.+-++..........++...+|+ 
T Consensus       466 G~l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            56777888888776654321   11111112346778889999999999999999999888877766666677777885 


Q ss_pred             EEEEE
Q psy13076        363 YLLTV  367 (423)
Q Consensus       363 ~l~~~  367 (423)
                      +++..
T Consensus       543 Yv~i~  547 (582)
T d1flga_         543 YLGVT  547 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            45443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.92  E-value=1.3  Score=35.86  Aligned_cols=220  Identities=10%  Similarity=0.023  Sum_probs=114.7

Q ss_pred             CeeEEEECCCCCeEEEEEcCCceeeEEEeecCCcceecccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCceeee
Q psy13076        177 PIKDIAWSPDNQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFKFKM  256 (423)
Q Consensus       177 ~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~~~~  256 (423)
                      .+..++|.+..+.+..+....... .....+.+.....+......+..+++...+..+..+-...+.|.+.+........
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I-~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSI-GRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEE-EEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeE-EEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            356788888877776654443332 2222332222222333334677888876665544555566788887754332222


Q ss_pred             eccccccCeEEEEECCCCCEEEEEEec-C--eEEEEECCCccceecccccccCCCeEEEEECCCCCeEE-EEeCCCcEEE
Q psy13076        257 TKQEHSRFVQAVRYSPSGSHFASAGFD-G--KVFLYDGASADLVSELGNPAHKGGVYAVAWKPDGTQLL-TASGDKTCKL  332 (423)
Q Consensus       257 ~~~~~~~~i~~l~~s~~g~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-s~s~d~~i~i  332 (423)
                      ........+..++++|...++.-.... +  .|.--++.... ...+.. ..-....++++++.++.|. +-...++|..
T Consensus       116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~  193 (263)
T d1npea_         116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (263)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ceeeee-ecccccceEEEeecCcEEEEEeCCCCEEEE
Confidence            222233557889999987776654432 2  24433443222 222221 1234568999998777664 4456778988


Q ss_pred             EecCCcceeeeeeeCceeEeeEEEEEecCcEEE-EEeCCCcEEEEecCCCCCceEEeccCCCceeEEEecCC
Q psy13076        333 WDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLL-TVSLSGFISYLDVNNPSTPIRVIKGHNKPITALALSPD  403 (423)
Q Consensus       333 wd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~h~~~v~~i~~sp~  403 (423)
                      .|+..... .....+.+ ....+++  .+.+|. +-..++.|...|..+++...............|+..|+
T Consensus       194 ~~~~g~~~-~~v~~~~~-~P~~lav--~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         194 LNPAQPGR-RKVLEGLQ-YPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EETTEEEE-EEEEECCC-SEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             EECCCCCe-EEEECCCC-CcEEEEE--ECCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence            88865432 22222211 1122322  345544 33456677777776654322222233334445555443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.88  E-value=2.2  Score=38.66  Aligned_cols=54  Identities=9%  Similarity=0.105  Sum_probs=35.8

Q ss_pred             CcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEEeCCCcEEEEecCCCCC
Q psy13076        328 KTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTVSLSGFISYLDVNNPST  383 (423)
Q Consensus       328 ~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~i~~~~~~~~~~  383 (423)
                      +.+.-||+.+++.+-+.....+.....  +...|..+.+++.+|.++-+|..+++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~--l~TagglVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGT--LSTAGNLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCE--EEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCce--eEECCCEEEEECCCCcEEEEECCCCcE
Confidence            457778888887765554333222111  223566777899999999999999764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=1.3  Score=35.75  Aligned_cols=223  Identities=12%  Similarity=-0.047  Sum_probs=118.2

Q ss_pred             cEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEEcCCceeeEEEeecC----CcceecccCCCcceeEEEEec
Q psy13076        154 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVGEGRERFGHVFMSET----GTSVGEISGQSKPINSCDFKP  229 (423)
Q Consensus       154 ~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~  229 (423)
                      .|+..++.+.+....  .. ....+.+++|.+..+.+..+........... .+.    ......+......+..+++.+
T Consensus        11 ~I~~~~l~~~~~~~~--~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~-l~~~~~~~~~~~~~~~~~~~p~glAvD~   86 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQ-LDRAHGVSSYDTVISRDIQAPDGLAVDW   86 (266)
T ss_dssp             SEEEEETTSCCCEEE--EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEE-C--------CEEEECSSCSCCCEEEEET
T ss_pred             eEEEEECCCCcceee--eC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEE-ecCCCCCcceEEEEeCCCCCcceEEEee
Confidence            477778765443221  11 2235678999988877766543333222211 111    111112223334566788887


Q ss_pred             CCCeeEEEEeCCCeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEE--ecCeEEEEECCCccceecccccccCC
Q psy13076        230 SRPFRIITGSEDNTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAG--FDGKVFLYDGASADLVSELGNPAHKG  307 (423)
Q Consensus       230 ~~~~~~~s~s~d~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~  307 (423)
                      .+..+..+-...+.|.+.+...................++++|...++.-..  ..+.|.-.++.... ...+.. ..-.
T Consensus        87 ~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~-~~~~  164 (266)
T d1ijqa1          87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT-ENIQ  164 (266)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC-SSCS
T ss_pred             ccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eecccc-cccc
Confidence            6666556666777888887655443333334445578899998665554443  23456655553322 222221 1234


Q ss_pred             CeEEEEECCCCCeEEEE-eCCCcEEEEecCCcceeeeeeeCceeEeeEEEEEecCcEEEEE-eCCCcEEEEecCCCCC
Q psy13076        308 GVYAVAWKPDGTQLLTA-SGDKTCKLWDIETKSAVSEFLMGNQVEDQQVSCLWQGDYLLTV-SLSGFISYLDVNNPST  383 (423)
Q Consensus       308 ~i~~l~~~~~~~~l~s~-s~d~~i~iwd~~~~~~i~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~i~~~~~~~~~~  383 (423)
                      ...++++++.++.|.-+ ...++|...|+..... ...............+...++.|.-. ..++.|+..+..++..
T Consensus       165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCC
T ss_pred             eeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcc
Confidence            57899999877655554 5567888888865432 22211111111122222345555444 3566777777665443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.25  E-value=3.2  Score=35.99  Aligned_cols=63  Identities=17%  Similarity=0.277  Sum_probs=42.7

Q ss_pred             CCcceEEEEEECCCCCEEEEE-ccC----CcEEEEEcCCCceeEEeeecCCCCCeeEEEECCCCCeEEEEE
Q psy13076        129 EHSCAVNVAKYSPSGFYIASG-DIS----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVVG  194 (423)
Q Consensus       129 ~h~~~i~~~~~sp~~~~l~s~-~~d----~~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~~~~~~  194 (423)
                      ++.-.+....++|+++++|-+ +..    -+|++.|+++++.+... +..  .....+.|.+|++.++...
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~--~~~~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LER--VKFSCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEE--ECSCCEEECTTSSEEEEEE
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-ccc--ccccceEEcCCCCEEEEEE
Confidence            444556667889999998832 222    47999999998765422 211  1124689999999888764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.67  E-value=4.1  Score=34.11  Aligned_cols=131  Identities=11%  Similarity=0.078  Sum_probs=72.1

Q ss_pred             cCCcEEEEEcCCCcee--EEeee-cCCCCCeeEEEECCCCCeEEEEEcCC-------------ceeeEEEeecCCcceec
Q psy13076        151 ISGKVRIWDTVNKEHI--LKNEF-HPIGGPIKDIAWSPDNQRMVVVGEGR-------------ERFGHVFMSETGTSVGE  214 (423)
Q Consensus       151 ~d~~i~vwd~~~~~~~--~~~~~-~~~~~~v~~v~~s~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~  214 (423)
                      ...+|.++++......  ..... .......+++....++..+++--...             ...+.++..+.+.. ..
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~~  200 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RV  200 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-EE
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-EE
Confidence            4567888887543321  11111 22234567888888887666531110             11234454444332 23


Q ss_pred             ccCCCcceeEEEEecCCCeeEEEEeCCCeEEEEcCCCce-eee-eccccccCeEEEEECCCCCEEEEEEe
Q psy13076        215 ISGQSKPINSCDFKPSRPFRIITGSEDNTIAVFEGPPFK-FKM-TKQEHSRFVQAVRYSPSGSHFASAGF  282 (423)
Q Consensus       215 ~~~~~~~i~~~~~~~~~~~~~~s~s~d~~i~~~~~~~~~-~~~-~~~~~~~~i~~l~~s~~g~~l~s~s~  282 (423)
                      +.......+.++++|++.+++++.+..+.|+.|+..... ... .........--+.+.+++..+..+..
T Consensus       201 ~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         201 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            333345678999999999888888889999998754322 111 11122333455777764444444443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.76  E-value=8.4  Score=34.97  Aligned_cols=81  Identities=19%  Similarity=0.206  Sum_probs=46.4

Q ss_pred             CeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceecccccc-cCCCeEEEEECCCCC-
Q psy13076        242 NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPA-HKGGVYAVAWKPDGT-  319 (423)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~-  319 (423)
                      +.+.-||..+.+.......... ...-.++-.|.+++.|+.||.++-+|.++|+.+.++.... ..+..  +.+..+|+ 
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~-~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P--~tY~~dGkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFA-VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHKGTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC-CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEE
T ss_pred             ceEEEEeCCCCceecccCCCCC-CccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC--eEEEECCEE
Confidence            4666777666655443321111 1111112246778889999999999999999987764322 11212  44545774 


Q ss_pred             eEEEEe
Q psy13076        320 QLLTAS  325 (423)
Q Consensus       320 ~l~s~s  325 (423)
                      |++...
T Consensus       530 Yvav~~  535 (596)
T d1w6sa_         530 YVAIYY  535 (596)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.15  E-value=7.6  Score=33.79  Aligned_cols=54  Identities=17%  Similarity=0.332  Sum_probs=37.5

Q ss_pred             CeEEEEECCCCCEEEEEEecCeEEEEECCCccce--ecccc----cccCCCeEEEEECCC
Q psy13076        264 FVQAVRYSPSGSHFASAGFDGKVFLYDGASADLV--SELGN----PAHKGGVYAVAWKPD  317 (423)
Q Consensus       264 ~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~--~~~~~----~~~~~~i~~l~~~~~  317 (423)
                      ...+++|.|+|+++++--..|.|++++..+++..  ..+..    ..-.++..+|+|+|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4678999999998886545799999987665432  22211    122456789999995

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.84  E-value=9.3  Score=34.42  Aligned_cols=81  Identities=14%  Similarity=0.157  Sum_probs=46.9

Q ss_pred             CeEEEEcCCCceeeeeccccccCeEEEEECCCCCEEEEEEecCeEEEEECCCccceeccccccc-CCCeEEEEECCCCC-
Q psy13076        242 NTIAVFEGPPFKFKMTKQEHSRFVQAVRYSPSGSHFASAGFDGKVFLYDGASADLVSELGNPAH-KGGVYAVAWKPDGT-  319 (423)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~i~~l~~~~~~~-  319 (423)
                      +.+.-+|..+.+............. =..+-.|.++++|+.||.++.+|.++|+.+.++...+. .+..  +.|..+|+ 
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~g-g~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNG-GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCC-CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCC-ceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEE
Confidence            3566666666655554332211111 01222567888899999999999999999877654321 1222  44555775 


Q ss_pred             eEEEEe
Q psy13076        320 QLLTAS  325 (423)
Q Consensus       320 ~l~s~s  325 (423)
                      |++..+
T Consensus       534 Yv~v~~  539 (573)
T d1kb0a2         534 YVSVAV  539 (573)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            554443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.70  E-value=15  Score=31.72  Aligned_cols=55  Identities=11%  Similarity=0.070  Sum_probs=37.7

Q ss_pred             ceEEEEEECCCCCEEEEEccCCcEEEEEcCCCceeEEeeecC------CCCCeeEEEECCC
Q psy13076        132 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP------IGGPIKDIAWSPD  186 (423)
Q Consensus       132 ~~i~~~~~sp~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~  186 (423)
                      ...++++|.|||+++++--..|.|++++..+++.........      -..-...|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            356799999999999887667999999876655432222211      1134568999985

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.74  E-value=16  Score=31.26  Aligned_cols=113  Identities=14%  Similarity=0.088  Sum_probs=65.8

Q ss_pred             cccCceeEEEEeCCCCeEEE-----ecCCCceEEeecCCcceeecccCCCCCCceEEeeCCCCCeEEEec----------
Q psy13076         45 GHNKPITALALSPDRGTVFT-----GSHDGFITRWNAKTEYIFATLPRTQRGQPIVLGGDPKGKNFLYTN----------  109 (423)
Q Consensus        45 gh~~~V~~l~~~~~~~~l~s-----g~~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  109 (423)
                      ++.=.+..+.+||++++++-     |+.--++++.|+++++.+........  ...+.+.++++.+++..          
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~--~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK--FSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC--SCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccccc--ccceEEcCCCCEEEEEEeccccCcccc
Confidence            34334456788999998763     33445689999999876542211111  12356778888777642          


Q ss_pred             -------CCeEEEEecCCCcccc--cccCCc--ceEEEEEECCCCCEEEEEc---cCCcEEEEE
Q psy13076        110 -------GNSVIIRNIENPAISD--IYTEHS--CAVNVAKYSPSGFYIASGD---ISGKVRIWD  159 (423)
Q Consensus       110 -------~~~~~i~~~~~~~~~~--~~~~h~--~~i~~~~~sp~~~~l~s~~---~d~~i~vwd  159 (423)
                             ...+..+.+.++....  ++.+..  .-+..+..++++++++...   .+....+|-
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~  263 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY  263 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred             cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEE
Confidence                   1246666666654433  333332  3466777899999886432   234445553