Psyllid ID: psy13086

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MDWSPLYPELKDPTCEKKVEFVDVGCGKLYLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGRHV
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEcccccccccccccccEEEEEEcccHHHHHHHHcccccEEEEEcccccccccccccccccHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHccccccccccHHHccccccccccccccHHHHHHHHccccEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccccccccEEEEEEccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHEHccccHHHHHHcccEEEcHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHcccccEccHHHHHHcccHHHHHHcccHcccEEEcccccEEEEEEEEEEEc
Coil and Loop (DISEMBL)
mdwsplypelkdptcekkvefvdvgcgklylpmfpstlilglEIRVKVSDYVIDEWSLYLKKMFflypdphfkrckyKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVShftehplfvecdleelkrtdpvvdKLYQSTEEGQKVTRNKGEKFCAVFRRGRHV
Flexible Loop (DISEMBL)
mdwsplypelkdptceKKVEFVDVGCGKLYLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLyqsteegqkvtrnkgekfcavfrrgrhv
Low Complexity Region (SEG)
MDWSPLYPELKDPTCEKKVEFVDVGCGKLYLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGRHV
Disordered region (IsUnstruct)
*************TCEKKVEFVDVGCGKLYLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLY****************FCAVF******
Disordered Region (DISOPRED)
MDWSPLYPELKDPTCEKKVEFVDVGCGKLYLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGRH*
Disordered Region (DISEMBL)
MDWSPLYPELKDPTCEKKVEFVDVGCGKLYLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGRHV
Disordered Region (DISPRO)
MDWSPLYPELKDPTCEKKVEFVDVGCGKLYLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGRHV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDWSPLYPELKDPTCEKKVEFVDVGCGKLYLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGRHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	169	2.2.26 [Sep-21-2011]
Q1HPU2	236	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.952	0.682	0.577	5e-53
B4L529	248	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.952	0.649	0.527	3e-51
B4M703	247	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.952	0.651	0.529	2e-50
B4JLU7	247	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.952	0.651	0.514	3e-50
B4N278	251	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.952	0.641	0.495	5e-49
Q29I16	247	tRNA (guanine-N(7)-)-meth	yes	N/A	0.952	0.651	0.495	8e-49
B4H4I3	247	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.952	0.651	0.495	1e-48
B4R338	256	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.952	0.628	0.5	4e-48
B3P8V8	256	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.952	0.628	0.495	6e-48
B4I9N7	256	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.952	0.628	0.5	6e-48

>sp|Q1HPU2|TRMB_BOMMO tRNA (guanine-N(7)-)-methyltransferase OS=Bombyx mori PE=2 SV=1

 Score =  206 bits (524), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 115/199 (57%), Positives = 132/199 (66%), Gaps = 38/199 (19%)

Query: 2   DWSPLYPELKDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVIDEW 56
           DW+PLYP + +     +VEF+DVGCG   L     PMFPS L+LG EIRVKVSDYV D  
Sbjct: 33  DWTPLYPIISEKP--NQVEFLDVGCGYGGLLVALSPMFPSNLMLGSEIRVKVSDYVNDRI 90

Query: 57  SLY------------------------------LKKMFFLYPDPHFKRCKYKWRIINQNL 86
                                            LKKMFFLYPDPHFK+ K+KWRIIN+ L
Sbjct: 91  KALRVQYPDQYQNVAVLRTNAMKYLPNFFHKGQLKKMFFLYPDPHFKKAKHKWRIINKWL 150

Query: 87  LSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTE 146
           LSEYAYVL E GIVYTITDVKDL++W+V+HF EHPLF     EELK  DP+++KLY+STE
Sbjct: 151 LSEYAYVLCEQGIVYTITDVKDLNEWMVAHFEEHPLFESVPEEELKE-DPIIEKLYESTE 209

Query: 147 EGQKVTRNKGEKFCAVFRR 165
           EGQKVTRN GEKF AVFRR
Sbjct: 210 EGQKVTRNNGEKFLAVFRR 228

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
Bombyx mori (taxid: 7091)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3

>sp|B4L529|TRMB_DROMO tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila mojavensis GN=GI21651 PE=3 SV=1

 Score =  200 bits (509), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/203 (52%), Positives = 127/203 (62%), Gaps = 42/203 (20%)

Query: 1   MDWSPLYPELKDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVID- 54
           +DW  LYP + D   +++V+F D+GCG          MFP  L +G+EIRVKVSDYVID 
Sbjct: 49  VDWRSLYPSMGD---DQQVQFADIGCGYGGFLVTLGEMFPEKLAIGMEIRVKVSDYVIDR 105

Query: 55  ----------EWSLY----------------------LKKMFFLYPDPHFKRCKYKWRII 82
                     E + Y                      L+KMFFLYPDPHFKR K+KWRII
Sbjct: 106 IAALRLKNANEATTYQNIACIRTNAMKYLPNYFQKSQLEKMFFLYPDPHFKRAKHKWRII 165

Query: 83  NQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLY 142
           NQ LLSEYAYVL +GG+VYT+TDV+DLH WIVSH T+HPLF     EE    DP+  KLY
Sbjct: 166 NQALLSEYAYVLRKGGLVYTMTDVEDLHTWIVSHMTQHPLFERLSDEEAN-ADPITPKLY 224

Query: 143 QSTEEGQKVTRNKGEKFCAVFRR 165
           QS+EEG KV RNKGE F A+FRR
Sbjct: 225 QSSEEGAKVVRNKGEHFLAIFRR 247

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila mojavensis (taxid: 7230)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B4M703|TRMB_DROVI tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila virilis GN=GJ16889 PE=3 SV=1

 Score =  198 bits (503), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 125/202 (61%), Gaps = 41/202 (20%)

Query: 1   MDWSPLYPELKDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVID- 54
           +DW  LYP +     E++VEF D+GCG          MFP  L +G+EIRVKVSDYVID 
Sbjct: 49  VDWRSLYPNI---GSEQQVEFADIGCGYGGFLVTLGEMFPDKLAIGMEIRVKVSDYVIDR 105

Query: 55  ---------EWSLY----------------------LKKMFFLYPDPHFKRCKYKWRIIN 83
                    E S Y                      L+KMFFLYPDPHFKR K+KWRIIN
Sbjct: 106 IAALRMKNAETSAYQNIACIRTNAMKYLPNYFQKSQLEKMFFLYPDPHFKRAKHKWRIIN 165

Query: 84  QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQ 143
           Q LLSEYAYVL  GG+VYT+TDV+DLH WIVSH T+HPL+     EE    DP+  KLYQ
Sbjct: 166 QALLSEYAYVLRSGGLVYTMTDVEDLHKWIVSHMTQHPLYERLTDEEAN-ADPITPKLYQ 224

Query: 144 STEEGQKVTRNKGEKFCAVFRR 165
           S+EEG KV RNKG+ F A+FRR
Sbjct: 225 SSEEGAKVVRNKGDHFLAIFRR 246

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila virilis (taxid: 7244)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B4JLU7|TRMB_DROGR tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila grimshawi GN=GH24451 PE=3 SV=1

 Score =  197 bits (501), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 127/202 (62%), Gaps = 41/202 (20%)

Query: 1   MDWSPLYPELKDPTCEKKVEFVDVGCGK-----LYLPMFPSTLILGLEIRVKVSDYVID- 54
           +DW  LYP + D   E++VEF D+GCG          M+P  L +G+EIRVKVSDYV+D 
Sbjct: 49  VDWRSLYPSIND---EQQVEFADIGCGYGGFLVTLGEMYPKKLSIGMEIRVKVSDYVVDR 105

Query: 55  ---------EWSLY----------------------LKKMFFLYPDPHFKRCKYKWRIIN 83
                    E + Y                      L+KMFFLYPDPHFKR K+KWRIIN
Sbjct: 106 IAALRLKNSETAAYQNIACIRTNAMKYLPNYFRKSQLEKMFFLYPDPHFKRAKHKWRIIN 165

Query: 84  QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQ 143
           Q LLSEYAYVL  GG+VYT+TDV+DLH WIVSH T+HPL+     +E  + DP+  KLYQ
Sbjct: 166 QALLSEYAYVLRTGGLVYTMTDVEDLHKWIVSHMTQHPLYERLS-DEATKADPITPKLYQ 224

Query: 144 STEEGQKVTRNKGEKFCAVFRR 165
           S+EEG KV RNKG+ F A+FRR
Sbjct: 225 SSEEGAKVVRNKGDHFLAIFRR 246

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila grimshawi (taxid: 7222)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B4N278|TRMB_DROWI tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila willistoni GN=GK16167 PE=3 SV=1

 Score =  193 bits (490), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 101/204 (49%), Positives = 126/204 (61%), Gaps = 43/204 (21%)

Query: 1   MDWSPLYPELKDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVIDE 55
           +DWS LYP ++    +++VEF D+GCG          MFP  L +G+EIRVKVSDYV+D 
Sbjct: 51  VDWSALYPNIQ---PDQQVEFADIGCGYGGFLVTLGEMFPQKLSIGMEIRVKVSDYVVDR 107

Query: 56  WSL----------------------------------YLKKMFFLYPDPHFKRCKYKWRI 81
            +                                    L+KMFFLYPDPHFKR K+KWRI
Sbjct: 108 IAALRLKSGKLNGDAYKNIACIRTNAMKYLPNYFRKGQLEKMFFLYPDPHFKRAKHKWRI 167

Query: 82  INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKL 141
           INQ LLSEYAYVL +GG+VYT+TDV+DLH WIVSH  +HPL+     E+ +  DP+  KL
Sbjct: 168 INQALLSEYAYVLRQGGLVYTMTDVEDLHQWIVSHMNQHPLYERISPED-ESQDPITPKL 226

Query: 142 YQSTEEGQKVTRNKGEKFCAVFRR 165
           YQS+EEG KV RNKG+ F A+FRR
Sbjct: 227 YQSSEEGAKVVRNKGDHFLAIFRR 250

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila willistoni (taxid: 7260)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q29I16|TRMB_DROPS tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila pseudoobscura pseudoobscura GN=GA17913 PE=3 SV=2

 Score =  192 bits (488), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 126/202 (62%), Gaps = 41/202 (20%)

Query: 1   MDWSPLYPELKDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVIDE 55
           +DW  LYP ++    +++V F D+GCG          +FP  + +G+EIRVKVSDYV+D 
Sbjct: 49  VDWRSLYPSIR---ADQEVSFADIGCGYGGFLVTLGELFPEKISIGMEIRVKVSDYVLDR 105

Query: 56  WSLY--------------------------------LKKMFFLYPDPHFKRCKYKWRIIN 83
            +                                  L+KMFFLYPDPHFKR K+KWRIIN
Sbjct: 106 ITALRQKSSGTGAYQNIACLRTNAMKYLPNYFRKGQLEKMFFLYPDPHFKRAKHKWRIIN 165

Query: 84  QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQ 143
           Q LLSEYAYVL +GG+VYT+TDV+DLH+WIV+H  EHPL+   D EE   TDP+  KLYQ
Sbjct: 166 QALLSEYAYVLRKGGLVYTMTDVEDLHNWIVTHMDEHPLYERLDEEEAN-TDPITPKLYQ 224

Query: 144 STEEGQKVTRNKGEKFCAVFRR 165
           S+EEG KV RNKG+ F A+FRR
Sbjct: 225 SSEEGAKVVRNKGDHFLAIFRR 246

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B4H4I3|TRMB_DROPE tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila persimilis GN=GL18335 PE=3 SV=1

 Score =  192 bits (488), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 126/202 (62%), Gaps = 41/202 (20%)

Query: 1   MDWSPLYPELKDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVIDE 55
           +DW  LYP ++    +++V F D+GCG          +FP  + +G+EIRVKVSDYV+D 
Sbjct: 49  VDWRSLYPSIR---ADQEVSFADIGCGYGGFLVTLGELFPEKISIGMEIRVKVSDYVLDR 105

Query: 56  WSL--------------------------------YLKKMFFLYPDPHFKRCKYKWRIIN 83
            +                                  L+KMFFLYPDPHFKR K+KWRIIN
Sbjct: 106 ITALRQKSSGTGAYQNIACLRTNAMKYLPNYFRKGQLEKMFFLYPDPHFKRAKHKWRIIN 165

Query: 84  QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQ 143
           Q LLSEYAYVL +GG+VYT+TDV+DLH+WIV+H  EHPL+   D EE   TDP+  KLYQ
Sbjct: 166 QALLSEYAYVLRKGGLVYTMTDVEDLHNWIVTHMDEHPLYERLDEEEAN-TDPITPKLYQ 224

Query: 144 STEEGQKVTRNKGEKFCAVFRR 165
           S+EEG KV RNKG+ F A+FRR
Sbjct: 225 SSEEGAKVVRNKGDHFLAIFRR 246

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila persimilis (taxid: 7234)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B4R338|TRMB_DROSI tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila simulans GN=GD16394 PE=3 SV=1

 Score =  190 bits (482), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 123/202 (60%), Gaps = 41/202 (20%)

Query: 1   MDWSPLYPELKDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVIDE 55
           +DW  +YP ++     ++V F DVGCG          MFP  L +G+EIRVKVSDYV+D 
Sbjct: 58  VDWRSMYPSIQQ---GQQVSFADVGCGYGGFLVTLGEMFPEKLSIGMEIRVKVSDYVVDR 114

Query: 56  WSL--------------------------------YLKKMFFLYPDPHFKRCKYKWRIIN 83
            +                                  L+KMFFLYPDPHFKR K+KWRIIN
Sbjct: 115 IAALRRRSADTGAYQNIACLRTNAMKYLPNYFSKGQLEKMFFLYPDPHFKRAKHKWRIIN 174

Query: 84  QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQ 143
           Q LLSEYAYVL +GG+VYT+TDV+DLH WIV+H  EHPL+ E   EE    DP+  KLYQ
Sbjct: 175 QALLSEYAYVLRKGGLVYTMTDVEDLHKWIVTHMEEHPLY-ERLTEEEANADPITPKLYQ 233

Query: 144 STEEGQKVTRNKGEKFCAVFRR 165
           S+EEG KV RNKG+ F A+FRR
Sbjct: 234 SSEEGAKVVRNKGDHFLAIFRR 255

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila simulans (taxid: 7240)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B3P8V8|TRMB_DROER tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila erecta GN=GG12652 PE=3 SV=1

 Score =  189 bits (481), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 123/202 (60%), Gaps = 41/202 (20%)

Query: 1   MDWSPLYPELKDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVIDE 55
           +DW  +YP ++     ++V F D+GCG          MFP  L +G+EIRVKVSDYV+D 
Sbjct: 58  VDWRSMYPSIQQ---GQQVSFADIGCGYGGFLVTLGEMFPEKLSIGMEIRVKVSDYVVDR 114

Query: 56  WSL--------------------------------YLKKMFFLYPDPHFKRCKYKWRIIN 83
            +                                  L+KMFFLYPDPHFKR K+KWRIIN
Sbjct: 115 IAALRRKCADTGAYQNVACLRTNAMKYLPNYFAKGQLEKMFFLYPDPHFKRAKHKWRIIN 174

Query: 84  QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQ 143
           Q LLSEYAYVL +GG+VYT+TDV+DLH WIV+H  EHPL+ E   EE    DP+  KLYQ
Sbjct: 175 QALLSEYAYVLRKGGLVYTMTDVEDLHKWIVTHMEEHPLY-ERITEEEANADPITPKLYQ 233

Query: 144 STEEGQKVTRNKGEKFCAVFRR 165
           S+EEG KV RNKG+ F A+FRR
Sbjct: 234 SSEEGAKVVRNKGDHFLAIFRR 255

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila erecta (taxid: 7220)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B4I9N7|TRMB_DROSE tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila sechellia GN=GM18921 PE=3 SV=1

 Score =  189 bits (481), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 123/202 (60%), Gaps = 41/202 (20%)

Query: 1   MDWSPLYPELKDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVIDE 55
           +DW  +YP ++     ++V F DVGCG          MFP  L +G+EIRVKVSDYV+D 
Sbjct: 58  VDWRSMYPSIQQ---GQQVSFADVGCGYGGFLVTLGEMFPEKLSIGMEIRVKVSDYVVDR 114

Query: 56  WSL--------------------------------YLKKMFFLYPDPHFKRCKYKWRIIN 83
            +                                  L+KMFFLYPDPHFKR K+KWRIIN
Sbjct: 115 VAALRRRCADTGAYQNIACLRTNAMKYLPNYFSKGQLEKMFFLYPDPHFKRAKHKWRIIN 174

Query: 84  QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQ 143
           Q LLSEYAYVL +GG+VYT+TDV+DLH WIV+H  EHPL+ E   EE    DP+  KLYQ
Sbjct: 175 QALLSEYAYVLRKGGLVYTMTDVEDLHKWIVTHMEEHPLY-ERLTEEEANADPITPKLYQ 233

Query: 144 STEEGQKVTRNKGEKFCAVFRR 165
           S+EEG KV RNKG+ F A+FRR
Sbjct: 234 SSEEGAKVVRNKGDHFLAIFRR 255

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila sechellia (taxid: 7238)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
307170995	247	tRNA (guanine-N(7)-)-methyltransferase [	0.970	0.663	0.576	7e-55
332372792	248	unknown [Dendroctonus ponderosae]	0.970	0.661	0.574	5e-54
357613094	240	tRNA (guanine-N(7)-)-methyltransferase [	0.964	0.679	0.587	4e-53
91090808	245	PREDICTED: similar to tRNA (guanine-N7-)	0.970	0.669	0.569	4e-53
332025707	250	tRNA (guanine-N(7)-)-methyltransferase [	0.970	0.656	0.553	2e-52
383854927	253	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.970	0.648	0.550	6e-52
340724877	253	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.964	0.644	0.557	9e-52
307214369	245	tRNA (guanine-N(7)-)-methyltransferase [	0.970	0.669	0.549	1e-51
114051962	236	tRNA (guanine-N(7)-)-methyltransferase [	0.952	0.682	0.577	2e-51
350422109	253	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.964	0.644	0.552	4e-51

>gi|307170995|gb|EFN63058.1| tRNA (guanine-N(7)-)-methyltransferase [Camponotus floridanus]

 Score =  218 bits (555), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 117/203 (57%), Positives = 137/203 (67%), Gaps = 39/203 (19%)

Query: 1   MDWSPLYPELKDPTCE---KKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYV 52
           MDWS LYP+      E   K VEF DVGCG   L     PMFP++LILG+EIRVKVSDYV
Sbjct: 36  MDWSALYPQYFSGNTEETQKCVEFADVGCGYGGLLVALSPMFPNSLILGMEIRVKVSDYV 95

Query: 53  IDEWSLY------------------------------LKKMFFLYPDPHFKRCKYKWRII 82
           +D  +                                LKKMFFLYPDPHFK+ K+KWRII
Sbjct: 96  MDRIAALRSQKPGQYQNIACLRTNAMKYLPNYFFKGQLKKMFFLYPDPHFKKSKHKWRII 155

Query: 83  NQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLY 142
           N++LL+EYAYVL+EG IVYT+TDV+DLH+WIV HF EHPLF E   ++L  TDPVV+KLY
Sbjct: 156 NKSLLAEYAYVLAEGAIVYTVTDVEDLHEWIVQHFQEHPLFEEVTKQDLA-TDPVVEKLY 214

Query: 143 QSTEEGQKVTRNKGEKFCAVFRR 165
           +STEEGQKV+RNKG KF AVFRR
Sbjct: 215 ESTEEGQKVSRNKGNKFLAVFRR 237

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372792|gb|AEE61538.1| unknown [Dendroctonus ponderosae]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 116/202 (57%), Positives = 135/202 (66%), Gaps = 38/202 (18%)

Query: 1   MDWSPLYPELKDPTCE--KKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVI 53
           MDWS  YPE   P  E   KVEFVD+GCG   L     PM+P +LILG+EIRVKVSDYV+
Sbjct: 40  MDWSKYYPEKFKPNEEHNAKVEFVDIGCGYGGLLITLSPMYPESLILGMEIRVKVSDYVM 99

Query: 54  DEWSL------------------------------YLKKMFFLYPDPHFKRCKYKWRIIN 83
           D  +                                LKKMFFLYPDPHFK+ K+KWRIIN
Sbjct: 100 DRIAALRSQSPSQFQNIACLRSNAMKYLPNFFKKGQLKKMFFLYPDPHFKKAKHKWRIIN 159

Query: 84  QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQ 143
           ++LL+EYAYVL EGGIVYT+TDVKDL++W+V HFTEHPLF     +EL   DP+V+KLY 
Sbjct: 160 KSLLAEYAYVLMEGGIVYTVTDVKDLNEWMVQHFTEHPLFEPIQGDELA-ADPIVEKLYS 218

Query: 144 STEEGQKVTRNKGEKFCAVFRR 165
           STEEGQKVTRN G+KF AVFRR
Sbjct: 219 STEEGQKVTRNNGDKFLAVFRR 240

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357613094|gb|EHJ68312.1| tRNA (guanine-N(7)-)-methyltransferase [Danaus plexippus]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 117/199 (58%), Positives = 134/199 (67%), Gaps = 36/199 (18%)

Query: 2   DWSPLYPELKDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVIDEW 56
           DWS LYP LK  + +K VEF+DVGCG   L     PMFP  L+LGLEIRVKVSDYV D  
Sbjct: 33  DWSNLYPILKKESSKKNVEFLDVGCGYGGLLVTLSPMFPENLMLGLEIRVKVSDYVNDRI 92

Query: 57  SLY------------------------------LKKMFFLYPDPHFKRCKYKWRIINQNL 86
             +                              LKKMFFLYPDPHFK+ K+KWRIIN+ L
Sbjct: 93  LAFRKQFPDQYQNIAVLRTNAMKYLPNFFHKGQLKKMFFLYPDPHFKKAKHKWRIINKWL 152

Query: 87  LSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTE 146
           LSEYAYVL+E GIVYTITDVKDLHDW+V+HF EHPLF     +ELK  D +V+KL++STE
Sbjct: 153 LSEYAYVLAEQGIVYTITDVKDLHDWMVTHFEEHPLFKRIPDDELK-NDVIVEKLFESTE 211

Query: 147 EGQKVTRNKGEKFCAVFRR 165
           EGQKVTRN GEKF AVF+R
Sbjct: 212 EGQKVTRNNGEKFLAVFQR 230

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090808|ref|XP_970814.1| PREDICTED: similar to tRNA (guanine-N7-)-methyltransferase [Tribolium castaneum] gi|270013976|gb|EFA10424.1| hypothetical protein TcasGA2_TC012665 [Tribolium castaneum]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 135/202 (66%), Gaps = 38/202 (18%)

Query: 1   MDWSPLYPEL--KDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVI 53
           MDW   YPEL  KD      VEF D+GCG   L     P+FP TL+LG+EIRVKVSDYV+
Sbjct: 37  MDWCAYYPELVNKDQGSNPVVEFADIGCGYGGLLTTLSPLFPKTLMLGMEIRVKVSDYVM 96

Query: 54  DEWSL------------------------------YLKKMFFLYPDPHFKRCKYKWRIIN 83
           D  +                                LKKMFFLYPDPHFK+ K+KWRIIN
Sbjct: 97  DRIAALRSQNPGQYQNIACLRSNAMKYLPNYFKKGQLKKMFFLYPDPHFKKSKHKWRIIN 156

Query: 84  QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQ 143
           Q+LL+EYAYVL+ GGIVYT+TDVK+LH+W+  HF EHPLF +   EELKR DPVVDKL+ 
Sbjct: 157 QSLLAEYAYVLAVGGIVYTVTDVKELHEWMKQHFNEHPLFEQIPDEELKR-DPVVDKLFD 215

Query: 144 STEEGQKVTRNKGEKFCAVFRR 165
           S+EEGQKVTRN+G+KF AVFRR
Sbjct: 216 SSEEGQKVTRNEGDKFLAVFRR 237

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025707|gb|EGI65865.1| tRNA (guanine-N(7)-)-methyltransferase [Acromyrmex echinatior]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/206 (55%), Positives = 134/206 (65%), Gaps = 42/206 (20%)

Query: 1   MDWSPLYPELKDPTCE------KKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVS 49
           MDWS LYP+      E      K VEF DVGCG   L     PMFP  LILG+EIRVKVS
Sbjct: 36  MDWSTLYPQYFQSNDEQTLERQKHVEFADVGCGYGGLLVTLSPMFPDNLILGMEIRVKVS 95

Query: 50  DYVIDEWSLY------------------------------LKKMFFLYPDPHFKRCKYKW 79
           DYV+D  +                                LKKMFFLYPDPHFK+ K+KW
Sbjct: 96  DYVMDRIAALRSQNPGQYQNIACLRTNAMKYLPNYFYKGQLKKMFFLYPDPHFKKSKHKW 155

Query: 80  RIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVD 139
           RIIN++LL+EYAYVL+EG IVYT+TDV+DLH WI+ HF EHPLF E   ++L   DPVV+
Sbjct: 156 RIINKSLLAEYAYVLAEGAIVYTVTDVEDLHKWILQHFQEHPLFEEVTKQDLA-ADPVVE 214

Query: 140 KLYQSTEEGQKVTRNKGEKFCAVFRR 165
           KLY+STEEG+KVTRN+G+KF AVFRR
Sbjct: 215 KLYESTEEGKKVTRNEGDKFLAVFRR 240

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854927|ref|XP_003702971.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Megachile rotundata]

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 115/209 (55%), Positives = 136/209 (65%), Gaps = 45/209 (21%)

Query: 1   MDWSPLYP--------ELKDPTCEKK-VEFVDVGCGKLYL-----PMFPSTLILGLEIRV 46
           MDWS L+P        E K+    KK VEF D+GCG   L      MFP  LI+G+EIRV
Sbjct: 36  MDWSALFPHYFSTDKEEAKENNIPKKCVEFADIGCGYGGLLVTLSSMFPDNLIVGMEIRV 95

Query: 47  KVSDYVIDEWSL------------------------------YLKKMFFLYPDPHFKRCK 76
           KVSDYV+D  +                                LKKMFFLYPDPHFK+ K
Sbjct: 96  KVSDYVMDRIAALRSQNPGQYQNIACLRTNAMKYLPNYFHKGQLKKMFFLYPDPHFKKSK 155

Query: 77  YKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDP 136
           +KWRIIN+ LL+EYAYVL+EG IVYT+TDVKDLH+WIV HF EHPLF E   EE+ + DP
Sbjct: 156 HKWRIINKTLLAEYAYVLAEGAIVYTVTDVKDLHEWIVRHFQEHPLFDELSKEEVDK-DP 214

Query: 137 VVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
           +V+KLY+STEEGQKVTRNKG+KF AVF+R
Sbjct: 215 IVEKLYESTEEGQKVTRNKGDKFLAVFKR 243

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724877|ref|XP_003400805.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Bombus terrestris]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 117/210 (55%), Positives = 138/210 (65%), Gaps = 47/210 (22%)

Query: 1   MDWSPLYP--------ELKDPTCEKK-VEFVDVGCG------KLYLPMFPSTLILGLEIR 45
           M+WS LYP        E K+    +K VEFVD+GCG       L L MFP  LILG+EIR
Sbjct: 36  MNWSSLYPFYFVTNEGESKEQNFSQKCVEFVDIGCGYGGLLVTLSL-MFPENLILGMEIR 94

Query: 46  VKVSDYVIDEWSLY------------------------------LKKMFFLYPDPHFKRC 75
           VKVSDYV+D  +                                LKKMFFLYPDPHFK+ 
Sbjct: 95  VKVSDYVMDRIAALRSQNPGQYQNIACLRTNAMKYLPNYFHKGQLKKMFFLYPDPHFKKS 154

Query: 76  KYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTD 135
           K+KWRIIN+ LL+EYAYVL+EG IVYT+TDVKDLH+WIV HF EHPLF +   EEL + D
Sbjct: 155 KHKWRIINKTLLAEYAYVLTEGAIVYTVTDVKDLHEWIVKHFREHPLFDDVSKEELDK-D 213

Query: 136 PVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
           P+V+KLY+STEEGQKVTRNKG+KF AVF+R
Sbjct: 214 PIVEKLYESTEEGQKVTRNKGDKFLAVFKR 243

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214369|gb|EFN89443.1| tRNA (guanine-N(7)-)-methyltransferase [Harpegnathos saltator]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/204 (54%), Positives = 134/204 (65%), Gaps = 40/204 (19%)

Query: 1   MDWSPLYPELKDP----TCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDY 51
           MDW+ LYPE  D       +K VEFVD+GCG   L     PMFP +LILG+EIR+KV+DY
Sbjct: 33  MDWNTLYPEYFDADNKQETQKCVEFVDIGCGYGGLLVTLSPMFPDSLILGMEIRIKVADY 92

Query: 52  VIDEWSLY------------------------------LKKMFFLYPDPHFKRCKYKWRI 81
           V D  +                                LKKMFFLYPDPHFK+ K+KWRI
Sbjct: 93  VRDRIAALRWQSPGQYQNIACLRSNAMKYLPNYFHKGQLKKMFFLYPDPHFKKSKHKWRI 152

Query: 82  INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKL 141
           IN++LL+EYAY+L+EG  VYTITDV +LH WIV HF EHPLF E   E+L   DP+V+KL
Sbjct: 153 INKSLLAEYAYLLAEGAFVYTITDVNELHKWIVQHFQEHPLFEEVAKEDLD-ADPIVEKL 211

Query: 142 YQSTEEGQKVTRNKGEKFCAVFRR 165
           Y+STEEGQKVTRNKG+KF A+FRR
Sbjct: 212 YESTEEGQKVTRNKGDKFLAMFRR 235

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114051962|ref|NP_001040444.1| tRNA (guanine-N(7)-)-methyltransferase [Bombyx mori] gi|121958908|sp|Q1HPU2.1|TRMB_BOMMO RecName: Full=tRNA (guanine-N(7)-)-methyltransferase; AltName: Full=tRNA (guanine(46)-N(7))-methyltransferase; AltName: Full=tRNA(m7G46)-methyltransferase gi|95102916|gb|ABF51399.1| tRNA (guanine-N7-)-methyltransferase [Bombyx mori]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/199 (57%), Positives = 132/199 (66%), Gaps = 38/199 (19%)

Query: 2   DWSPLYPELKDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVIDEW 56
           DW+PLYP + +     +VEF+DVGCG   L     PMFPS L+LG EIRVKVSDYV D  
Sbjct: 33  DWTPLYPIISEKP--NQVEFLDVGCGYGGLLVALSPMFPSNLMLGSEIRVKVSDYVNDRI 90

Query: 57  SLY------------------------------LKKMFFLYPDPHFKRCKYKWRIINQNL 86
                                            LKKMFFLYPDPHFK+ K+KWRIIN+ L
Sbjct: 91  KALRVQYPDQYQNVAVLRTNAMKYLPNFFHKGQLKKMFFLYPDPHFKKAKHKWRIINKWL 150

Query: 87  LSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTE 146
           LSEYAYVL E GIVYTITDVKDL++W+V+HF EHPLF     EELK  DP+++KLY+STE
Sbjct: 151 LSEYAYVLCEQGIVYTITDVKDLNEWMVAHFEEHPLFESVPEEELKE-DPIIEKLYESTE 209

Query: 147 EGQKVTRNKGEKFCAVFRR 165
           EGQKVTRN GEKF AVFRR
Sbjct: 210 EGQKVTRNNGEKFLAVFRR 228

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422109|ref|XP_003493059.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Bombus impatiens]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/210 (55%), Positives = 137/210 (65%), Gaps = 47/210 (22%)

Query: 1   MDWSPLYP--------ELKDPTCEKK-VEFVDVGCG------KLYLPMFPSTLILGLEIR 45
           M+W  LYP        E K+    +K VEFVD+GCG       L L MFP  LILG+EIR
Sbjct: 36  MNWGSLYPFYFVTNEGESKEQNLSQKCVEFVDIGCGYGGLLVTLSL-MFPENLILGMEIR 94

Query: 46  VKVSDYVIDEWSLY------------------------------LKKMFFLYPDPHFKRC 75
           VKVSDYV+D  +                                LKKMFFLYPDPHFK+ 
Sbjct: 95  VKVSDYVMDRIAALRSQNPGQYQNIACLRTNAMKYLPNYFHKGQLKKMFFLYPDPHFKKS 154

Query: 76  KYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTD 135
           K+KWRIIN+ LL+EYAYVL+EG IVYT+TDVKDLH+WIV HF EHPLF +   EEL + D
Sbjct: 155 KHKWRIINKTLLAEYAYVLTEGAIVYTVTDVKDLHEWIVKHFHEHPLFDDVSKEELDK-D 213

Query: 136 PVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
           P+V+KLY+STEEGQKVTRNKG+KF AVF+R
Sbjct: 214 PIVEKLYESTEEGQKVTRNKGDKFLAVFKR 243

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
WB|WBGene00012205	256	W02B12.10 [Caenorhabditis eleg	0.621	0.410	0.688	7.7e-48
UNIPROTKB|Q23126	256	W02B12.10 "tRNA (guanine-N(7)-	0.621	0.410	0.688	7.7e-48
FB|FBgn0025629	256	CG4045 [Drosophila melanogaste	0.621	0.410	0.679	9.8e-48
UNIPROTKB|Q6NU94	273	mettl1 "tRNA (guanine-N(7)-)-m	0.621	0.384	0.650	3.7e-46
UNIPROTKB|F1PBM7	239	METTL1 "Uncharacterized protei	0.621	0.439	0.650	7.6e-46
UNIPROTKB|Q9UBP6	276	METTL1 "tRNA (guanine-N(7)-)-m	0.621	0.380	0.660	9.7e-46
MGI|MGI:1339986	268	Mettl1 "methyltransferase like	0.621	0.391	0.650	2e-45
UNIPROTKB|I3L6K0	280	METTL1 "Uncharacterized protei	0.621	0.375	0.650	4.1e-45
UNIPROTKB|I3LDM2	271	METTL1 "Uncharacterized protei	0.621	0.387	0.650	4.1e-45
UNIPROTKB|I3LIC9	277	METTL1 "Uncharacterized protei	0.621	0.379	0.650	4.1e-45

WB|WBGene00012205 W02B12.10 [Caenorhabditis elegans (taxid:6239)]

 Score = 398 (145.2 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 73/106 (68%), Positives = 87/106 (82%)

Query:    60 LKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119
             L KMFFL+PDPHFK  K+KWRII   LLSEYAYVL EGGI+YTITDVKDLH+W+V H +E
Sbjct:   146 LSKMFFLFPDPHFKNKKHKWRIITPTLLSEYAYVLREGGIIYTITDVKDLHEWMVKHLSE 205

Query:   120 HPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
             HPLF     EE+K+ DP+V+ L++STEEGQKVTRN G K+ A+FRR
Sbjct:   206 HPLFERLTEEEMKK-DPIVEMLFESTEEGQKVTRNDGGKWPAIFRR 250

GO:0006400 "tRNA modification" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|Q23126 W02B12.10 "tRNA (guanine-N(7)-)-methyltransferase" [Caenorhabditis elegans (taxid:6239)]

 Score = 398 (145.2 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 73/106 (68%), Positives = 87/106 (82%)

Query:    60 LKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119
             L KMFFL+PDPHFK  K+KWRII   LLSEYAYVL EGGI+YTITDVKDLH+W+V H +E
Sbjct:   146 LSKMFFLFPDPHFKNKKHKWRIITPTLLSEYAYVLREGGIIYTITDVKDLHEWMVKHLSE 205

Query:   120 HPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
             HPLF     EE+K+ DP+V+ L++STEEGQKVTRN G K+ A+FRR
Sbjct:   206 HPLFERLTEEEMKK-DPIVEMLFESTEEGQKVTRNDGGKWPAIFRR 250

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0006400 "tRNA modification" evidence=ISS

FB|FBgn0025629 CG4045 [Drosophila melanogaster (taxid:7227)]

 Score = 394 (143.8 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
 Identities = 72/106 (67%), Positives = 86/106 (81%)

Query:    60 LKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119
             L+KMFFLYPDPHFKR K+KWRIINQ LLSEYAY+L +GG++YT+TDV+DLH WIV+H  E
Sbjct:   151 LEKMFFLYPDPHFKRAKHKWRIINQALLSEYAYILRKGGLLYTMTDVEDLHKWIVTHMEE 210

Query:   120 HPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
             HPL+ E   EE    DP+  KLYQS+EEG KV RNKG+ F A+FRR
Sbjct:   211 HPLY-ERLTEEEANADPITPKLYQSSEEGAKVVRNKGDHFLAIFRR 255

GO:0005575 "cellular_component" evidence=ND

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0006400 "tRNA modification" evidence=ISS

UNIPROTKB|Q6NU94 mettl1 "tRNA (guanine-N(7)-)-methyltransferase" [Xenopus laevis (taxid:8355)]

 Score = 375 (137.1 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
 Identities = 69/106 (65%), Positives = 86/106 (81%)

Query:    60 LKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119
             L KMFFL+PDPHFK+ K+KWRII+  LL+EY+Y L  GG+VYTITDV+++H+W+V HFTE
Sbjct:   156 LSKMFFLFPDPHFKKTKHKWRIISPTLLAEYSYALRVGGMVYTITDVEEVHEWMVKHFTE 215

Query:   120 HPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
             HPLF   + EEL  +D +VDKL  STEEG+KV RNKG+ F AVFRR
Sbjct:   216 HPLFERVEKEELV-SDIIVDKLGTSTEEGKKVQRNKGQNFLAVFRR 260

GO:0005634 "nucleus" evidence=ISS

GO:0006400 "tRNA modification" evidence=ISS

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

UNIPROTKB|F1PBM7 METTL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 368 (134.6 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 69/106 (65%), Positives = 82/106 (77%)

Query:    60 LKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119
             L KMFFL+PDPHFKR K+KWRII+  LL+EYAYVL  GG+VYTITDV +LHDW+ +HF  
Sbjct:   111 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLGVGGLVYTITDVLELHDWMCTHFER 170

Query:   120 HPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
             HPLF    LEEL   DP+V+ L  STEEG+KV RN G+ F A+FRR
Sbjct:   171 HPLFERVPLEELSE-DPIVEHLGTSTEEGKKVLRNGGKNFPAIFRR 215

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|Q9UBP6 METTL1 "tRNA (guanine-N(7)-)-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 367 (134.2 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 70/106 (66%), Positives = 82/106 (77%)

Query:    60 LKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119
             L KMFFL+PDPHFKR K+KWRII+  LL+EYAYVL  GG+VYTITDV +LHDW+ +HF E
Sbjct:   154 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEE 213

Query:   120 HPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
             HPLF    LE+L   DPVV  L  STEEG+KV RN G+ F A+FRR
Sbjct:   214 HPLFERVPLEDLSE-DPVVGHLGTSTEEGKKVLRNGGKNFPAIFRR 258

GO:0000049 "tRNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006400 "tRNA modification" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IDA

GO:0036265 "RNA (guanine-N7)-methylation" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:1339986 Mettl1 "methyltransferase like 1" [Mus musculus (taxid:10090)]

 Score = 370 (135.3 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
 Identities = 69/106 (65%), Positives = 83/106 (78%)

Query:    60 LKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119
             L KMFFL+PDPHFKR K+KWRII+  LL+EYAYVL  GG+VYT+TDV +LH+W+ +HF E
Sbjct:   148 LAKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTVTDVPELHEWMCTHFEE 207

Query:   120 HPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
             HPLF    LEEL   DP+V+ L  STEEG+KV RN G+ F AVFRR
Sbjct:   208 HPLFERVPLEELSE-DPIVEHLGSSTEEGKKVLRNGGKNFPAVFRR 252

GO:0000049 "tRNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006400 "tRNA modification" evidence=ISO

GO:0008033 "tRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISO

UNIPROTKB|I3L6K0 METTL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 364 (133.2 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 69/106 (65%), Positives = 82/106 (77%)

Query:    60 LKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119
             L KMFFL+PDPHFKR K+KWRII+  LL+EYAYVLS GG+VYTITDV +LHDW+ +HF  
Sbjct:   158 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLSVGGLVYTITDVLELHDWMCTHFEG 217

Query:   120 HPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
             HPLF    LEEL   DP++  L  STEEG+KV RN G+ F A+FRR
Sbjct:   218 HPLFERVPLEELSE-DPILGHLGTSTEEGKKVLRNGGKNFPAIFRR 262

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|I3LDM2 METTL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 364 (133.2 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 69/106 (65%), Positives = 82/106 (77%)

Query:    60 LKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119
             L KMFFL+PDPHFKR K+KWRII+  LL+EYAYVLS GG+VYTITDV +LHDW+ +HF  
Sbjct:   149 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLSVGGLVYTITDVLELHDWMCTHFEG 208

Query:   120 HPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
             HPLF    LEEL   DP++  L  STEEG+KV RN G+ F A+FRR
Sbjct:   209 HPLFERVPLEELSE-DPILGHLGXSTEEGKKVLRNGGKNFPAIFRR 253

GO:0005634 "nucleus" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

UNIPROTKB|I3LIC9 METTL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 364 (133.2 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 69/106 (65%), Positives = 82/106 (77%)

Query:    60 LKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119
             L KMFFL+PDPHFKR K+KWRII+  LL+EYAYVLS GG+VYTITDV +LHDW+ +HF  
Sbjct:   155 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLSVGGLVYTITDVLELHDWMCTHFEG 214

Query:   120 HPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
             HPLF    LEEL   DP++  L  STEEG+KV RN G+ F A+FRR
Sbjct:   215 HPLFERVPLEELSE-DPILGHLGTSTEEGKKVLRNGGKNFPAIFRR 259

GO:0005634 "nucleus" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q23126	TRMB_CAEEL	2, ., 1, ., 1, ., 3, 3	0.5049	0.9526	0.6289	yes	N/A
Q29I16	TRMB_DROPS	2, ., 1, ., 1, ., 3, 3	0.4950	0.9526	0.6518	yes	N/A
O77263	TRMB_DROME	2, ., 1, ., 1, ., 3, 3	0.4851	0.9526	0.6289	yes	N/A
Q8GXB7	TRMB_ARATH	2, ., 1, ., 1, ., 3, 3	0.4285	0.9704	0.6533	yes	N/A
Q7Q2P7	TRMB_ANOGA	2, ., 1, ., 1, ., 3, 3	0.4422	0.9408	0.6765	yes	N/A
Q28H76	TRMBA_XENTR	2, ., 1, ., 1, ., 3, 3	0.4814	0.9704	0.6007	yes	N/A
Q5XJ57	TRMB_DANRE	2, ., 1, ., 1, ., 3, 3	0.4876	0.9704	0.6804	yes	N/A
Q9Z120	TRMB_MOUSE	2, ., 1, ., 1, ., 3, 3	0.5046	0.9704	0.6119	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.921
3rd Layer	2.1.1.33	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	169
pfam02390	198	pfam02390, Methyltransf_4, Putative methyltransfer	7e-40
TIGR00091	194	TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methylt	3e-24
COG0220	227	COG0220, COG0220, Predicted S-adenosylmethionine-d	1e-20
PRK00121	202	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransfe	3e-11

>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase

 Score =  133 bits (336), Expect = 7e-40
 Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 38/194 (19%)

Query: 2   DWSPLYPELKDPTCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYVID-- 54
           DW  L+        E+ + F+++GCG            P  L +G+EIRV   D  +   
Sbjct: 12  DWQALFGN------EQPL-FLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKI 64

Query: 55  ----------------EWSL-------YLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYA 91
                              L        L+K+F  +PDP  K+  +K R++    L EYA
Sbjct: 65  IALRGLQNLRILCGDAMKLLPNLFPDGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYA 124

Query: 92  YVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKV 151
            VL  GG+++  TDV++  +W++ H +EHPLF           DP+ D L  STE  QKV
Sbjct: 125 RVLKPGGVLHLATDVEEYFEWMLEHLSEHPLFERILESTDLNEDPITD-LRISTEYEQKV 183

Query: 152 TRNKGEKFCAVFRR 165
            R  G  F  +F +
Sbjct: 184 QRLGGPIFELIFIK 197

This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. Length = 198

>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase

 Score = 92.8 bits (231), Expect = 3e-24
 Identities = 50/198 (25%), Positives = 75/198 (37%), Gaps = 40/198 (20%)

Query: 2   DWSPLYPELKDPTCEKKVEFVDVGCGKLYLPM-----FPSTLILGLEIR----------- 45
           D+S   P+       K    +++GCGK    +      P    LG+EI            
Sbjct: 1   DYSLDKPDFATVFGNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKA 60

Query: 46  ---------------VKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEY 90
                           ++ D    + SL   K+F  +PDP  K+   K RI   + L EY
Sbjct: 61  NKLGLKNLHVLCGDANELLDKFFPDGSL--SKVFLNFPDPWPKKRHNKRRITQPHFLKEY 118

Query: 91  AYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLY---QSTEE 147
           A VL +GG+++  TD + L + ++   +E+ LF        K TD     L      TE 
Sbjct: 119 ANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTS----KSTDLNNSPLSRPRNMTEY 174

Query: 148 GQKVTRNKGEKFCAVFRR 165
            Q+  R     F   F R
Sbjct: 175 EQRFERLGHPVFDLCFER 192

This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria. It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In E. coli, this protein flanks the DNA repair protein MutY, also called micA [Protein synthesis, tRNA and rRNA base modification]. Length = 194

>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

 Score = 84.7 bits (210), Expect = 1e-20
 Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 42/196 (21%)

Query: 2   DWSPLYPELKDPTCEKKVEFVDVGCGK----LYL-PMFPSTLILGLEIR----------- 45
           DWS L+     P        +++G G     + +    P    LG+EIR           
Sbjct: 39  DWSALFGNNNAPI------VLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKI 92

Query: 46  ---------------VKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEY 90
                          V+V DY+I + SL   K++  +PDP  K+  +K R+     L  Y
Sbjct: 93  KELGLKNLRLLCGDAVEVLDYLIPDGSL--DKIYINFPDPWPKKRHHKRRLTQPEFLKLY 150

Query: 91  AYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQK 150
           A  L  GG+++  TD ++  +W++    EHP F++ + E+L    P  D       E ++
Sbjct: 151 ARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPD--NNPVTEYEQ 208

Query: 151 VTRNKGEK-FCAVFRR 165
             R  G   +   F +
Sbjct: 209 KFRRLGHPVYDLEFIK 224

Length = 227

>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed

 Score = 58.6 bits (143), Expect = 3e-11
 Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 33/135 (24%)

Query: 22  VDVGCGK----LYL-PMFPSTLILGLEIRV--------KVSDY--------------VID 54
           +++G GK    + +    P    +G+E+          K+ +               V+ 
Sbjct: 45  LEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL 104

Query: 55  EW----SLYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLH 110
           +     SL   +++  +PDP  K+  +K R++    L+ YA  L  GG ++  TD +   
Sbjct: 105 DMFPDGSL--DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYA 162

Query: 111 DWIVSHFTEHPLFVE 125
           ++++   +    F+ 
Sbjct: 163 EYMLEVLSAEGGFLV 177

Length = 202

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	100.0
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	100.0
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	100.0
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.96
KOG3115|consensus	249		99.94
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.94
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.89
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.67
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.58
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.58
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.57
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.56
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.54
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.52
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.51
KOG1540|consensus	296		99.51
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.48
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.47
KOG1270|consensus	282		99.45
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.45
PLN02244	340	tocopherol O-methyltransferase	99.44
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.43
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.43
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.42
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.42
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.42
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.41
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.41
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.4
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.39
PRK07402	196	precorrin-6B methylase; Provisional	99.37
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.36
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.35
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.34
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.34
PRK05785	226	hypothetical protein; Provisional	99.34
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.33
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.33
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.32
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.32
PRK11207	197	tellurite resistance protein TehB; Provisional	99.31
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.3
PLN02336	475	phosphoethanolamine N-methyltransferase	99.3
PRK04266	226	fibrillarin; Provisional	99.3
PRK06922	677	hypothetical protein; Provisional	99.29
COG4123	248	Predicted O-methyltransferase [General function pr	99.28
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.28
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.28
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.28
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.27
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.26
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.26
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.26
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.25
PLN02490	340	MPBQ/MSBQ methyltransferase	99.25
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.25
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.24
KOG4300|consensus	252		99.23
PRK08317	241	hypothetical protein; Provisional	99.23
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.22
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.22
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.2
PRK12335	287	tellurite resistance protein TehB; Provisional	99.2
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.2
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.19
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.18
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.18
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.18
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.16
TIGR03438	301	probable methyltransferase. This model represents	99.16
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.15
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.14
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.13
KOG1541|consensus	270		99.13
KOG2361|consensus	264		99.12
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.12
PRK04457	262	spermidine synthase; Provisional	99.11
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.11
PLN03075	296	nicotianamine synthase; Provisional	99.1
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.1
PRK14967	223	putative methyltransferase; Provisional	99.09
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.08
PRK00811	283	spermidine synthase; Provisional	99.08
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.08
PRK14968	188	putative methyltransferase; Provisional	99.08
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.07
PRK06202	232	hypothetical protein; Provisional	99.07
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.06
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.06
KOG3010|consensus	261		99.05
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.04
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.03
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.03
TIGR00438	188	rrmJ cell division protein FtsJ.	99.03
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.02
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.02
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.02
PRK01581	374	speE spermidine synthase; Validated	99.02
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.01
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.01
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.0
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.99
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.99
PLN02336	475	phosphoethanolamine N-methyltransferase	98.98
PHA03411	279	putative methyltransferase; Provisional	98.98
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.98
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.98
COG2890	280	HemK Methylase of polypeptide chain release factor	98.97
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.97
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.96
KOG1271|consensus	227		98.94
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.94
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.94
PRK03612	521	spermidine synthase; Provisional	98.92
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.92
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.91
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.91
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.9
PLN02366	308	spermidine synthase	98.89
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.89
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.88
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.87
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.86
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.86
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.83
PTZ00146	293	fibrillarin; Provisional	98.83
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.82
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.82
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.81
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.8
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.76
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.76
KOG2899|consensus	288		98.72
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.69
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.68
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.63
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.63
PHA03412	241	putative methyltransferase; Provisional	98.63
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.58
COG4122	219	Predicted O-methyltransferase [General function pr	98.57
KOG2904|consensus	328		98.56
KOG1975|consensus	389		98.54
PLN02672	1082	methionine S-methyltransferase	98.51
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.49
PLN02823	336	spermine synthase	98.48
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.48
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.46
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.45
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.43
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.42
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.41
PLN02476	278	O-methyltransferase	98.41
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.37
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.34
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.28
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.26
KOG1331|consensus	293		98.26
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.26
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.24
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.2
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.18
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.17
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.17
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.14
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.11
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.1
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.08
PRK04148	134	hypothetical protein; Provisional	98.08
KOG3420|consensus	185		98.07
KOG3191|consensus	209		98.06
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.05
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.04
KOG3045|consensus	325		98.04
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.01
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.0
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.99
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.98
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.98
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.98
PRK00536	262	speE spermidine synthase; Provisional	97.97
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.94
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.93
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.93
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.92
KOG1661|consensus	237		97.91
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.91
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.87
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.86
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.86
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.8
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.78
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.75
KOG1499|consensus	346		97.73
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.71
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.7
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.69
KOG2940|consensus	325		97.59
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.59
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.55
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.55
KOG1269|consensus	364		97.51
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.51
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.48
COG2521	287	Predicted archaeal methyltransferase [General func	97.47
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.42
PF13679	141	Methyltransf_32: Methyltransferase domain	97.39
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.36
KOG1500|consensus	517		97.33
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.31
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.29
KOG1709|consensus	271		97.28
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.26
KOG2915|consensus	314		97.25
KOG2187|consensus	534		97.19
KOG4589|consensus	232		97.17
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.17
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.15
KOG1663|consensus	237		97.14
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.08
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.07
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.07
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.95
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.85
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.79
KOG3178|consensus	342		96.76
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.61
COG2520	341	Predicted methyltransferase [General function pred	96.58
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.46
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.46
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.45
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.41
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.3
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.3
KOG0820|consensus	315		96.29
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.23
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	95.95
KOG3987|consensus	288		95.86
KOG2352|consensus	482		95.86
COG0742	187	N6-adenine-specific methylase [DNA replication, re	95.77
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	95.68
KOG1122|consensus	460		95.64
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	95.63
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	95.59
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	95.57
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.31
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.93
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	94.74
KOG2352|consensus	482		94.69
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	94.57
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.35
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.33
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	94.3
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.18
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	94.18
PRK11524	284	putative methyltransferase; Provisional	94.13
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	93.62
KOG1596|consensus	317		93.55
KOG1562|consensus	337		93.43
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	93.39
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	93.35
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	92.84
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	92.52
KOG1253|consensus	525		92.46
COG4301	321	Uncharacterized conserved protein [Function unknow	92.37
PRK13699	227	putative methylase; Provisional	92.36
KOG1501|consensus	636		92.32
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	92.1
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	91.99
PHA01634	156	hypothetical protein	91.4
COG4076	252	Predicted RNA methylase [General function predicti	91.28
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	91.0
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	90.89
COG4798	238	Predicted methyltransferase [General function pred	90.64
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	90.04
COG3897	218	Predicted methyltransferase [General function pred	89.39
KOG3201|consensus	201		88.83
COG3129	292	Predicted SAM-dependent methyltransferase [General	88.69
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	88.48
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	88.35
KOG2730|consensus	263		88.33
KOG2793|consensus	248		87.99
KOG4058|consensus	199		87.22
KOG2920|consensus	282		85.87
COG2384	226	Predicted SAM-dependent methyltransferase [General	83.49
PLN02353	473	probable UDP-glucose 6-dehydrogenase	82.24
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	81.43
COG1565	370	Uncharacterized conserved protein [Function unknow	81.33
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	80.63
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	80.06

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=100.00  E-value=2e-36  Score=236.56  Aligned_cols=158  Identities=26%  Similarity=0.483  Sum_probs=129.5

Q ss_pred             CCCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------
Q psy13086          1 MDWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------   57 (169)
Q Consensus         1 ~~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------   57 (169)
                      +||+++|++.       .+.+||||||.|     +|..+|+.+++|||++...+..|.+++.                  
T Consensus         8 ~~~~~~f~~~-------~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l   80 (195)
T PF02390_consen    8 LDWQEIFGND-------NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELL   80 (195)
T ss_dssp             TCHHHHHTSC-------CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHH
T ss_pred             cCHHHHcCCC-------CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHH
Confidence            5899999997       469999999999     8889999999999999998888765422                  


Q ss_pred             ------cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc-CCCceecCccc
Q psy13086         58 ------LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE-HPLFVECDLEE  130 (169)
Q Consensus        58 ------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~-~~~f~~~~~~~  130 (169)
                            +++|.|+++|||||++.+|++||++.+.+++.++++|+|||.|+++||+++|++|+.+++.. ++.|+......
T Consensus        81 ~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~~~~  160 (195)
T PF02390_consen   81 RRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIEESD  160 (195)
T ss_dssp             HHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-TES
T ss_pred             hhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcccCc
Confidence                  78999999999999999999999999999999999999999999999999999999999999 79999874332


Q ss_pred             cccCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEec
Q psy13086        131 LKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRG  166 (169)
Q Consensus       131 ~~~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~  166 (169)
                      ...+.|. ...++.|+||++|+++|++||+++|+|+
T Consensus       161 ~~~~~~~-~~~~~~T~yE~k~~~~G~~i~~~~f~k~  195 (195)
T PF02390_consen  161 DLHESPF-DDDYIPTKYERKWLAEGKPIYRLIFKKV  195 (195)
T ss_dssp             SGGCSCC-CTTCCSSHHHHHHHHTTSS-EEEEEEE-
T ss_pred             ccccCCC-CCCCCCCHHHHHHHHCCCCCEEEEEEEC
Confidence            1113443 2368999999999999999999999985

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=100.00  E-value=3.6e-33  Score=222.46  Aligned_cols=159  Identities=26%  Similarity=0.402  Sum_probs=131.4

Q ss_pred             CCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------
Q psy13086          2 DWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------   57 (169)
Q Consensus         2 ~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------   57 (169)
                      ||+++|++..      .+.+||||||.|     +|+.+|+.+++|||+....+..|.+++.                   
T Consensus        39 ~~~~~f~~~~------~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~  112 (227)
T COG0220          39 DWSALFGNNN------APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLD  112 (227)
T ss_pred             hHHHHhCCCC------CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH
Confidence            6889999974      579999999999     9999999999999999998887764321                   


Q ss_pred             -----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccc
Q psy13086         58 -----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELK  132 (169)
Q Consensus        58 -----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~  132 (169)
                           +++|.|+++|||||++.+|++||++++.+++.++++|||||.|+++||+++|++|+......++.+......+.+
T Consensus       113 ~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~~  192 (227)
T COG0220         113 YLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLH  192 (227)
T ss_pred             hcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccccccc
Confidence                 599999999999999999999999999999999999999999999999999999966555656322221111111


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEecc
Q psy13086        133 RTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGR  167 (169)
Q Consensus       133 ~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~~  167 (169)
                       .+....+.++.|+||+++.+.|..|+++.|+|+.
T Consensus       193 -~~~~~~~~~~~T~yE~k~~~~g~~i~~l~~~~~~  226 (227)
T COG0220         193 -YNLPPPDNNPVTEYEQKFRRLGHPVYDLEFIKKK  226 (227)
T ss_pred             -cccccccCCCCcHHHHHHHhCCCceEEEEEEecC
Confidence             1122245689999999999999999999999975

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=100.00  E-value=6.9e-33  Score=215.98  Aligned_cols=158  Identities=27%  Similarity=0.382  Sum_probs=134.7

Q ss_pred             CCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------
Q psy13086          2 DWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------   57 (169)
Q Consensus         2 ~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------   57 (169)
                      +|.++|++.       .+++||||||+|     ++.++|+.+|+|||+|+.|++.|++++.                   
T Consensus         8 ~~~~~f~~~-------~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~   80 (194)
T TIGR00091         8 DFATVFGNK-------APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLD   80 (194)
T ss_pred             CHHHHhCCC-------CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHH
Confidence            688999864       579999999999     7788999999999999999999875421                   


Q ss_pred             -----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccc
Q psy13086         58 -----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELK  132 (169)
Q Consensus        58 -----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~  132 (169)
                           +++|.++++|||||++..|++++++.+.++++++++|||||.|+++||...|+.++.+.+..++.|+........
T Consensus        81 ~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~~~~~  160 (194)
T TIGR00091        81 KFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTDL  160 (194)
T ss_pred             hhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEeccccccc
Confidence                 478889999999999999999999999999999999999999999999999999999999999988876433211


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEecc
Q psy13086        133 RTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGR  167 (169)
Q Consensus       133 ~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~~  167 (169)
                      .+.+. ...+..|+||++|+++|++||+++|+|+|
T Consensus       161 ~~~~~-~~~~~~T~~E~~~~~~g~~i~~~~~~~~~  194 (194)
T TIGR00091       161 NNSPL-SRPRNMTEYEQRFERLGHPVFDLCFERLP  194 (194)
T ss_pred             CCCcc-cccCcCCHHHHHHHHCCCCeEEEEEEECC
Confidence            12221 12345799999999999999999999975

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.96  E-value=3.8e-29  Score=212.20  Aligned_cols=140  Identities=19%  Similarity=0.266  Sum_probs=123.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPD   69 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d   69 (169)
                      ++.+||||||+|     +|..+|+.+++|||+++.|++.|.+++.                       +++|.|+++||+
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd  202 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV  202 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence            678999999999     8888999999999999999998875432                       688999999999


Q ss_pred             CcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHH
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQ  149 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~  149 (169)
                      ||++.+|  ||++.+.++++++|+|+|||.+.+.||+.+|++++.+.+..++.|......    +    .+..+.|+||+
T Consensus       203 PW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~~~----~----~~~~i~TkyE~  272 (390)
T PRK14121        203 PWDKKPH--RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEIKK----N----AQLEVSSKYED  272 (390)
T ss_pred             Cccccch--hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeeccc----C----CCCCCCCHHHH
Confidence            9999888  788899999999999999999999999999999999999988877642111    1    24478999999


Q ss_pred             HHHHcCCCeEEEEEEecc
Q psy13086        150 KVTRNKGEKFCAVFRRGR  167 (169)
Q Consensus       150 ~~~~~g~~i~~~~~~r~~  167 (169)
                      +|+++|++||+++|++.+
T Consensus       273 r~~~~G~~Iy~l~~~~~~  290 (390)
T PRK14121        273 RWKKQNKDIYDLRIYNLE  290 (390)
T ss_pred             HHHHCCCCEEEEEEEeCC
Confidence            999999999999999864

>KOG3115|consensus

Probab=99.94  E-value=2.9e-27  Score=183.31  Aligned_cols=166  Identities=61%  Similarity=1.033  Sum_probs=151.6

Q ss_pred             CCCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------
Q psy13086          1 MDWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------   57 (169)
Q Consensus         1 ~~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------   57 (169)
                      |||+++|+++- .++++...+.|||||.|     |+..||+..++|+||..++.++.++||.                  
T Consensus        45 mDWS~~yp~f~-~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr  123 (249)
T KOG3115|consen   45 MDWSKYYPDFR-RALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLR  123 (249)
T ss_pred             CcHHHhhhhhh-hhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeee
Confidence            79999999986 44566688999999999     8899999999999999999999887653                  


Q ss_pred             -------------cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCce
Q psy13086         58 -------------LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFV  124 (169)
Q Consensus        58 -------------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~  124 (169)
                                   ++++..++.||||+|+.+.++++++...++.+++-+|++||.++..||+.++++||..++.+||.|+
T Consensus       124 ~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hplfe  203 (249)
T KOG3115|consen  124 TNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHPLFE  203 (249)
T ss_pred             ccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCcHhh
Confidence                         5677778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCccccccCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeccC
Q psy13086        125 ECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGRH  168 (169)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~~~  168 (169)
                      .+...... ++++.......|+.-+++.++|...+..+|+|++.
T Consensus       204 ~lt~ee~~-~d~~v~~~~~~teeg~kv~r~~g~~f~a~f~r~~~  246 (249)
T KOG3115|consen  204 RLTEEEEE-NDPCVELLSNATEEGKKVARNGGKKFVAVFRRIPN  246 (249)
T ss_pred             hcchhhhc-CCcchhhhhhhhhhcccccccCCceeeeeeeeccC
Confidence            98888777 78887888999999999999999999999999874

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.94  E-value=7.4e-27  Score=205.25  Aligned_cols=140  Identities=22%  Similarity=0.295  Sum_probs=118.8

Q ss_pred             CCCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------
Q psy13086          1 MDWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------   57 (169)
Q Consensus         1 ~~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------   57 (169)
                      ++|.++|+..       .+.+||||||.|     +|..+|+.+++|||++...+..|.+++.                  
T Consensus       338 i~~eklf~~~-------~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~  410 (506)
T PRK01544        338 FSKEKLVNEK-------RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLIL  410 (506)
T ss_pred             CCHHHhCCCC-------CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            3566667653       689999999999     8899999999999999987776643311                  


Q ss_pred             -----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccc
Q psy13086         58 -----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELK  132 (169)
Q Consensus        58 -----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~  132 (169)
                           +++|.++++|||||+|.+|++||++++.+++.++++|||||.++++||+.+|++|+...+.+++.|+.....  .
T Consensus       411 ~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~~~~--~  488 (506)
T PRK01544        411 NDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEIINKN--D  488 (506)
T ss_pred             HhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEecccc--c
Confidence                 789999999999999999999999999999999999999999999999999999999999999988875322  1


Q ss_pred             cCCCCCCCCCCCCHHHHHH
Q psy13086        133 RTDPVVDKLYQSTEEGQKV  151 (169)
Q Consensus       133 ~~~~~~~~~~~~T~ye~~~  151 (169)
                      +..+  .+.++.|+||+|+
T Consensus       489 ~~~~--~~~~~~T~yE~k~  505 (506)
T PRK01544        489 YLKP--HDNYVITKYHQKA  505 (506)
T ss_pred             ccCC--CCCCCCchhccCc
Confidence            1222  3678999999975

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.89  E-value=1.2e-22  Score=159.33  Aligned_cols=142  Identities=20%  Similarity=0.315  Sum_probs=114.8

Q ss_pred             CCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------
Q psy13086          2 DWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------   57 (169)
Q Consensus         2 ~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------   57 (169)
                      +|.++|+..       +.+|||||||+|     ++..+|+.+|+|||+|+.|++.|++++.                   
T Consensus        32 ~~~~~~~~~-------~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~  104 (202)
T PRK00121         32 DWAELFGND-------APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL  104 (202)
T ss_pred             CHHHHcCCC-------CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH
Confidence            677888883       688999999999     6677888899999999999999875421                   


Q ss_pred             -----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccc
Q psy13086         58 -----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELK  132 (169)
Q Consensus        58 -----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~  132 (169)
                           +++|.+.+.|++||.+..|+.++.....++++++++|||||.|+++++...+..++.+.+.+++........  .
T Consensus       105 ~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~~~--~  182 (202)
T PRK00121        105 DMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSEAG--D  182 (202)
T ss_pred             HHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccccch--h
Confidence                 457788888999988877777766678999999999999999999999999999999999988754442211  1


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHc
Q psy13086        133 RTDPVVDKLYQSTEEGQKVTRN  154 (169)
Q Consensus       133 ~~~~~~~~~~~~T~ye~~~~~~  154 (169)
                      |.  ...+..+.|+||++|+.+
T Consensus       183 ~~--~~~~~~~~~~~~~~~~~~  202 (202)
T PRK00121        183 YV--PRPEGRPMTEYERKGLRK  202 (202)
T ss_pred             hc--ccCccCCCcHHHHHhhcC
Confidence            11  123679999999999853

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.67  E-value=1.3e-16  Score=127.97  Aligned_cols=142  Identities=16%  Similarity=0.161  Sum_probs=90.6

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc---------ccceEEEeCCCCcccccc---hhh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL---------YLKKMFFLYPDPHFKRCK---YKW   79 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~---------~~d~v~~~f~d~~f~~~h---~~~   79 (169)
                      ++.+|||||||||     +++..+..+|+|+|+|+.|++.|++++..         .-|+..++|+|.+||...   ..|
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr  130 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR  130 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence            3789999999999     66777788999999999999999998761         223334789999998532   122


Q ss_pred             hcc-cHHHHHHHHHhccCCcEEEEEeCC--------hHHHHHHHH-HHhcCCCceecCccccccCCCCCCCCCCCCHHHH
Q psy13086         80 RII-NQNLLSEYAYVLSEGGIVYTITDV--------KDLHDWIVS-HFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQ  149 (169)
Q Consensus        80 ~~~-~~~~l~~~~rvLkpGG~l~i~~d~--------~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~  149 (169)
                      .+. .+.+|+|++|||||||++.+..-.        ..|..|... .++.-..+..-....-.|-..-...++.......
T Consensus       131 nv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~  210 (238)
T COG2226         131 NVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQ  210 (238)
T ss_pred             cCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHH
Confidence            222 378999999999999999876421        123444444 3333222221000000000000124466777788


Q ss_pred             HHHHcCCCe
Q psy13086        150 KVTRNKGEK  158 (169)
Q Consensus       150 ~~~~~g~~i  158 (169)
                      +..++|...
T Consensus       211 ~~~~~gf~~  219 (238)
T COG2226         211 MIEKAGFEE  219 (238)
T ss_pred             HHHhcCceE
Confidence            888877764

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.58  E-value=4.4e-15  Score=118.37  Aligned_cols=100  Identities=17%  Similarity=0.254  Sum_probs=81.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEE-----eC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFF-----LY   67 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~-----~f   67 (169)
                      +.+|||||||.|     +|+.  +++|+|+|+|+++|+.|+.+..                    +++|.|..     ++
T Consensus        60 g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv  137 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV  137 (243)
T ss_pred             CCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence            688999999999     4444  4899999999999999986432                    46776652     45


Q ss_pred             CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccc
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELK  132 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~  132 (169)
                      |||             ..+++.+.+.+||||.++++|.+.....++...+..+..+.+++.++++
T Consensus       138 ~dp-------------~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~  189 (243)
T COG2227         138 PDP-------------ESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHD  189 (243)
T ss_pred             CCH-------------HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchh
Confidence            554             4799999999999999999999999888888888877777777777654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.58  E-value=5.7e-15  Score=104.10  Aligned_cols=87  Identities=18%  Similarity=0.313  Sum_probs=58.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCCCC--------cccccchhh---
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYPDP--------HFKRCKYKW---   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~d~--------~f~~~h~~~---   79 (169)
                      +.+|||||||+|     +++.+|+.+++|||+|+.|++.|++++.  ..-+.+.+...|-        .||......   
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~   81 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL   81 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence            689999999999     6666799999999999999999998872  1111221111110        111110000   


Q ss_pred             -hc----ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         80 -RI----INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        80 -~~----~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       .+    ...++++.+++.|+|||++++.+
T Consensus        82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   82 HFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence             00    12568999999999999999875

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.57  E-value=1.9e-14  Score=120.40  Aligned_cols=136  Identities=9%  Similarity=0.037  Sum_probs=84.3

Q ss_pred             CCeEEEEcCccc-ccC--cCCCCcEEEEeCCHHHHHHHHHHhcc--ccceEE--------EeCCCCccccc------chh
Q psy13086         18 KVEFVDVGCGKL-YLP--MFPSTLILGLEIRVKVSDYVIDEWSL--YLKKMF--------FLYPDPHFKRC------KYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~--~~p~~~v~GiDis~~~l~~a~~~~~~--~~d~v~--------~~f~d~~f~~~------h~~   78 (169)
                      +.+|||||||+| ++.  ..++.+|+|||+|++|++.|+++...  ..+.+.        +.+++..||..      +|.
T Consensus       132 g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv  211 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV  211 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence            568999999999 221  12467999999999999999876431  001111        12333345532      222


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEK  158 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i  158 (169)
                      ..  ...++++++++|||||.+++.+.......+............+++.....|     ..++...+++....+.|..+
T Consensus       212 ~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~-----~~f~tp~eL~~lL~~aGf~i  284 (322)
T PLN02396        212 AN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQW-----SSFVTPEELSMILQRASVDV  284 (322)
T ss_pred             CC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCc-----cCCCCHHHHHHHHHHcCCeE
Confidence            11  368999999999999999999876654333322222111122233222222     23577888999999999887


Q ss_pred             EE
Q psy13086        159 FC  160 (169)
Q Consensus       159 ~~  160 (169)
                      ..
T Consensus       285 ~~  286 (322)
T PLN02396        285 KE  286 (322)
T ss_pred             EE
Confidence            43

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.56  E-value=7.1e-15  Score=117.89  Aligned_cols=88  Identities=18%  Similarity=0.272  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc----cccc-----eEEEeCCCCcccccc---hh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS----LYLK-----KMFFLYPDPHFKRCK---YK   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~----~~~d-----~v~~~f~d~~f~~~h---~~   78 (169)
                      ++.+|||||||||     +++.. |+..|+|+|+|++|++.|++++.    ..++     +..++|+|.+||..-   ..
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl  126 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL  126 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence            3679999999999     55554 66899999999999999998765    1222     223567777777421   11


Q ss_pred             hhcc-cHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRII-NQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~-~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +.+. ...+++|++|+|||||++.+..
T Consensus       127 rn~~d~~~~l~E~~RVLkPGG~l~ile  153 (233)
T PF01209_consen  127 RNFPDRERALREMYRVLKPGGRLVILE  153 (233)
T ss_dssp             GG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence            2221 3679999999999999998864

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.54  E-value=4.7e-15  Score=100.64  Aligned_cols=78  Identities=19%  Similarity=0.246  Sum_probs=54.7

Q ss_pred             EEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc-----eEEEeCCCCccccc------chhhhcccH
Q psy13086         22 VDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK-----KMFFLYPDPHFKRC------KYKWRIINQ   84 (169)
Q Consensus        22 LDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d-----~v~~~f~d~~f~~~------h~~~~~~~~   84 (169)
                      ||||||+|     +++. +..+++|+|+|+.|++.++++.. ..++     .-.++|++.+||..      |+..  ...
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--~~~   77 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--DPE   77 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--HHH
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--CHH
Confidence            89999999     5555 78999999999999999998765 1111     11245666677642      2221  136


Q ss_pred             HHHHHHHHhccCCcEEEE
Q psy13086         85 NLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i  102 (169)
                      .+++++.|+|||||.++|
T Consensus        78 ~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   78 AALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHcCcCeEEeC
Confidence            899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.52  E-value=5.5e-14  Score=114.34  Aligned_cols=85  Identities=14%  Similarity=0.115  Sum_probs=60.8

Q ss_pred             CCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-------cc-----cceEEEeCCCCccccc----
Q psy13086         18 KVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-------LY-----LKKMFFLYPDPHFKRC----   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-------~~-----~d~v~~~f~d~~f~~~----   75 (169)
                      +.+|||||||||     +++.. |+.+|+|+|+|++|++.|+++..       ..     .|...++|++..||..    
T Consensus        74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  153 (261)
T PLN02233         74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY  153 (261)
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence            678999999999     45543 56799999999999999986532       01     1112245556566642    


Q ss_pred             --chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 --KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 --h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        |+..  ....++++++|+|||||++++.+
T Consensus       154 ~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        154 GLRNVV--DRLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             ccccCC--CHHHHHHHHHHHcCcCcEEEEEE
Confidence              2111  13679999999999999999875

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.51  E-value=2.4e-13  Score=109.77  Aligned_cols=129  Identities=11%  Similarity=0.068  Sum_probs=78.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH-hc------------cccceEEEeCCCCcccccchhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE-WS------------LYLKKMFFLYPDPHFKRCKYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~-~~------------~~~d~v~~~f~d~~f~~~h~~~   79 (169)
                      +.+|||||||+|     ++..+|+.+++|+|+|+.|++.|+++ +.            +++|.|.+.+.-      |+..
T Consensus        30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l------~~~~  103 (255)
T PRK14103         30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSNAAL------QWVP  103 (255)
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEehhh------hhCC
Confidence            679999999999     66777888999999999999999764 21            234443332211      2211


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEeCCh---HHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCC
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTITDVK---DLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKG  156 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~~---~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~  156 (169)
                        ....++++++++|||||.+++.....   ...... ..+.....|...... ..|..  .........|.....+.|.
T Consensus       104 --d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~-~~~~~--~~~~~~~~~~~~~l~~aGf  177 (255)
T PRK14103        104 --EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAV-RALARREPWAKLLRD-IPFRV--GAVVQTPAGYAELLTDAGC  177 (255)
T ss_pred             --CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHH-HHHhccCchhHHhcc-ccccc--CcCCCCHHHHHHHHHhCCC
Confidence              12679999999999999999875321   112111 112211222211000 00000  1133567789999999998


Q ss_pred             Ce
Q psy13086        157 EK  158 (169)
Q Consensus       157 ~i  158 (169)
                      .+
T Consensus       178 ~v  179 (255)
T PRK14103        178 KV  179 (255)
T ss_pred             eE
Confidence            65

>KOG1540|consensus

Probab=99.51  E-value=5.8e-14  Score=112.79  Aligned_cols=153  Identities=12%  Similarity=0.095  Sum_probs=96.9

Q ss_pred             CCccCCCCCCCCCCCCCeEEEEcCccc-cc----CcCC------CCcEEEEeCCHHHHHHHHHHhc------------cc
Q psy13086          3 WSPLYPELKDPTCEKKVEFVDVGCGKL-YL----PMFP------STLILGLEIRVKVSDYVIDEWS------------LY   59 (169)
Q Consensus         3 ~~~~f~~~~~~~~~~~~~iLDiGCG~G-la----~~~p------~~~v~GiDis~~~l~~a~~~~~------------~~   59 (169)
                      |+++|-+-.+|+  +..++||++|||| +|    ...+      +.+|+++|||+.|+..+++|..            ..
T Consensus        88 WKd~~v~~L~p~--~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~  165 (296)
T KOG1540|consen   88 WKDMFVSKLGPG--KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE  165 (296)
T ss_pred             HHHHhhhccCCC--CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence            888887776664  4589999999999 22    2222      2799999999999999988762            23


Q ss_pred             cceEEEeCCCCcccccc---hhhhcc-cHHHHHHHHHhccCCcEEEEEeCC--h-HHHHHHHH-----HHhcCCCceecC
Q psy13086         60 LKKMFFLYPDPHFKRCK---YKWRII-NQNLLSEYAYVLSEGGIVYTITDV--K-DLHDWIVS-----HFTEHPLFVECD  127 (169)
Q Consensus        60 ~d~v~~~f~d~~f~~~h---~~~~~~-~~~~l~~~~rvLkpGG~l~i~~d~--~-~~~~~~~~-----~~~~~~~f~~~~  127 (169)
                      -|+..++|+|.+||.-.   -.|... .++.++|.+|||||||+|.+-.-.  + .+..|+..     .+..-+  +++.
T Consensus       166 ~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG--~~ia  243 (296)
T KOG1540|consen  166 GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLG--EIIA  243 (296)
T ss_pred             CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhh--Hhhh
Confidence            36667889998888421   112222 368999999999999999876422  2 23333332     211110  1110


Q ss_pred             -cccccc--CCCCCCCCCCCCHHHHHHHHcCCCeEE
Q psy13086        128 -LEELKR--TDPVVDKLYQSTEEGQKVTRNKGEKFC  160 (169)
Q Consensus       128 -~~~~~~--~~~~~~~~~~~T~ye~~~~~~g~~i~~  160 (169)
                       +...+.  -.- ...+.+..+|+.+....|.+.-.
T Consensus       244 gd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  244 GDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             hhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence             000000  000 12456777999999999988753

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.48  E-value=7.4e-14  Score=113.92  Aligned_cols=97  Identities=20%  Similarity=0.268  Sum_probs=68.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCC---CcEEEEeCCHHHHHHHHHHhc----cccceEEEeCCCCcccccchhhhcccHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPS---TLILGLEIRVKVSDYVIDEWS----LYLKKMFFLYPDPHFKRCKYKWRIINQN   85 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~---~~v~GiDis~~~l~~a~~~~~----~~~d~v~~~f~d~~f~~~h~~~~~~~~~   85 (169)
                      ..+|||||||+|     ++...+.   .+++|+|+|+.|++.|+++.+    ...|...++|++..||.....   ..+.
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~---~~~~  162 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI---YAPC  162 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEe---cCCC
Confidence            478999999999     4444553   479999999999999988754    112222345666666654321   2345


Q ss_pred             HHHHHHHhccCCcEEEEEeCChHHHHHHHHHH
Q psy13086         86 LLSEYAYVLSEGGIVYTITDVKDLHDWIVSHF  117 (169)
Q Consensus        86 ~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~  117 (169)
                      .+++++|+|||||.|+++++.+.....+...+
T Consensus       163 ~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~  194 (272)
T PRK11088        163 KAEELARVVKPGGIVITVTPGPRHLFELKGLI  194 (272)
T ss_pred             CHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence            68999999999999999987766554444443

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.47  E-value=2e-13  Score=110.09  Aligned_cols=80  Identities=18%  Similarity=0.253  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------cccceEEEeCCCCcccccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------LYLKKMFFLYPDPHFKRCK   76 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------~~~d~v~~~f~d~~f~~~h   76 (169)
                      ++.+|||||||+|     ++..+|..+++|+|+|+.|++.|+++++               .++|.|...+.      .|
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~------l~  104 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFANAS------LQ  104 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEccC------hh
Confidence            3678999999999     6677788999999999999999998754               12333322221      12


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +..  ....++++++++|||||.+++..
T Consensus       105 ~~~--d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        105 WLP--DHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             hCC--CHHHHHHHHHHhcCCCcEEEEEC
Confidence            211  13579999999999999999875

>KOG1270|consensus

Probab=99.45  E-value=9.8e-14  Score=111.81  Aligned_cols=95  Identities=14%  Similarity=0.197  Sum_probs=62.3

Q ss_pred             CeEEEEcCccc-ccCcC--CCCcEEEEeCCHHHHHHHHHHhc------cccceEEEeCC-------CCccccc------c
Q psy13086         19 VEFVDVGCGKL-YLPMF--PSTLILGLEIRVKVSDYVIDEWS------LYLKKMFFLYP-------DPHFKRC------K   76 (169)
Q Consensus        19 ~~iLDiGCG~G-la~~~--p~~~v~GiDis~~~l~~a~~~~~------~~~d~v~~~f~-------d~~f~~~------h   76 (169)
                      .+|||||||+| |++..  -+++|+|||++..|++.|++...      ..+. ..+.|.       -+.||..      +
T Consensus        91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~-y~l~~~~~~~E~~~~~fDaVvcsevle  169 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIA-YRLEYEDTDVEGLTGKFDAVVCSEVLE  169 (282)
T ss_pred             ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccc-eeeehhhcchhhcccccceeeeHHHHH
Confidence            56999999999 44322  25899999999999999987632      0000 001111       1124431      2


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHH
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSH  116 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~  116 (169)
                      |...  .+.+++.+.+.|||||.++++|-+.....|....
T Consensus       170 HV~d--p~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i  207 (282)
T KOG1270|consen  170 HVKD--PQEFLNCLSALLKPNGRLFITTINRTILSFAGTI  207 (282)
T ss_pred             HHhC--HHHHHHHHHHHhCCCCceEeeehhhhHHHhhccc
Confidence            2211  3689999999999999999999777665554433

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.45  E-value=2.6e-13  Score=110.51  Aligned_cols=88  Identities=16%  Similarity=0.155  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc-------ccceEEEeCCCCcccccchhhhc--
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL-------YLKKMFFLYPDPHFKRCKYKWRI--   81 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~-------~~d~v~~~f~d~~f~~~h~~~~~--   81 (169)
                      .++.+|||||||+|     ++..+ +.+|+|+|+|+.|++.|+++...       ..|.....+++..||.......+  
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h  129 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILH  129 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHh
Confidence            45679999999999     44443 57999999999999999987541       12222234555566643221100  


Q ss_pred             ----ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         82 ----INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        82 ----~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                          ....++++++++|||||.|++..
T Consensus       130 ~~~~d~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        130 LSYADKKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                13579999999999999999864

>PLN02244 tocopherol O-methyltransferase

Probab=99.44  E-value=2.9e-13  Score=113.95  Aligned_cols=85  Identities=18%  Similarity=0.221  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------cccceEEEeCCCCccccc------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------LYLKKMFFLYPDPHFKRC------   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------~~~d~v~~~f~d~~f~~~------   75 (169)
                      ++.+|||||||+|     +++.+ +.+|+|||+|+.|++.|++++.          ...|...+.|++..||..      
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            3578999999999     55555 6799999999999999987653          111222234566666642      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +|..  ....++++++|+|||||.|++.+
T Consensus       197 ~h~~--d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        197 EHMP--DKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             hccC--CHHHHHHHHHHHcCCCcEEEEEE
Confidence            2211  12579999999999999999975

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.43  E-value=1.6e-14  Score=100.22  Aligned_cols=71  Identities=18%  Similarity=0.272  Sum_probs=46.4

Q ss_pred             EEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCCCccc
Q psy13086         22 VDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        22 LDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d~~f~   73 (169)
                      ||||||+|     +...+|..+++|+|+|+.|++.|++++.                       +++|.|.+...     
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v-----   75 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV-----   75 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T-----
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh-----
Confidence            79999999     5556688999999999999988876543                       14444433222     


Q ss_pred             ccchhhhcccHHHHHHHHHhccCCcEE
Q psy13086         74 RCKYKWRIINQNLLSEYAYVLSEGGIV  100 (169)
Q Consensus        74 ~~h~~~~~~~~~~l~~~~rvLkpGG~l  100 (169)
                       .||...  ...+++.++++|||||.|
T Consensus        76 -l~~l~~--~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   76 -LHHLED--IEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -TS--S---HHHHHHHHTTT-TSS-EE
T ss_pred             -Hhhhhh--HHHHHHHHHHHcCCCCCC
Confidence             222211  368999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.43  E-value=3.4e-13  Score=108.66  Aligned_cols=87  Identities=11%  Similarity=0.022  Sum_probs=58.6

Q ss_pred             CCeEEEEcCccc-----ccC--cCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEe---CCCCcccc------cc
Q psy13086         18 KVEFVDVGCGKL-----YLP--MFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFL---YPDPHFKR------CK   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~--~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~---f~d~~f~~------~h   76 (169)
                      +.+|||||||+|     +++  ..|+.+++|+|+|+.|++.|++++.     ..++.+...   .+.+.++.      .|
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~  136 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ  136 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence            578999999999     344  3588999999999999999998864     122222111   11122221      12


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +...-....++++++++|||||.|++.+
T Consensus       137 ~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        137 FLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            2111012579999999999999999975

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.42  E-value=4.8e-13  Score=99.86  Aligned_cols=87  Identities=21%  Similarity=0.334  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCccc-----cc-CcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEE--------e--CCCCccccc----
Q psy13086         17 KKVEFVDVGCGKL-----YL-PMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFF--------L--YPDPHFKRC----   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la-~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~--------~--f~d~~f~~~----   75 (169)
                      ++.+|||+|||+|     ++ ..+|..+++|+|+|+.|++.|++++. ..++.+.+        .  ++ ..||..    
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~   81 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG   81 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence            4789999999999     66 45788999999999999999998654 11221111        0  11 123321    


Q ss_pred             --chhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         76 --KYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        76 --h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                        |+...  ...+++++.++||+||.+++.+..
T Consensus        82 ~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   82 VLHHFPD--PEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence              11111  257999999999999999987644

...

>TIGR00740 methyltransferase, putative

Probab=99.42  E-value=5.6e-13  Score=106.58  Aligned_cols=87  Identities=11%  Similarity=0.071  Sum_probs=57.6

Q ss_pred             CCeEEEEcCccc-----ccCc--CCCCcEEEEeCCHHHHHHHHHHhcc-----ccceEEEe---CCCCcccc------cc
Q psy13086         18 KVEFVDVGCGKL-----YLPM--FPSTLILGLEIRVKVSDYVIDEWSL-----YLKKMFFL---YPDPHFKR------CK   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~--~p~~~v~GiDis~~~l~~a~~~~~~-----~~d~v~~~---f~d~~f~~------~h   76 (169)
                      +.+|||||||+|     +++.  .|+.+++|+|+|+.|++.|++++..     .+..+...   ++.+.++.      .|
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l~  133 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ  133 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecchh
Confidence            578999999999     4444  4789999999999999999987641     11111100   11111221      12


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +...-....++++++|+|||||.|++..
T Consensus       134 ~~~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       134 FLPPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            2111012579999999999999999874

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.42  E-value=2.3e-12  Score=99.42  Aligned_cols=105  Identities=11%  Similarity=0.030  Sum_probs=67.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC------CCcccccchhh-hccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP------DPHFKRCKYKW-RIIN   83 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~------d~~f~~~h~~~-~~~~   83 (169)
                      +..+|||||||+|     +++.+|+.+++|+|+|+.|++.|++++. ..++.+.+...      ...||...... .-..
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~~~  110 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGGNL  110 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCccCH
Confidence            3678999999999     5667788999999999999999988764 11222221111      11233211000 0012


Q ss_pred             HHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         84 QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      ..+++.+.++|+|||.+++......-.......+.+++
T Consensus       111 ~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g  148 (187)
T PRK08287        111 TAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCG  148 (187)
T ss_pred             HHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCC
Confidence            56899999999999999886533333344555565554

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.41  E-value=1.1e-12  Score=102.03  Aligned_cols=87  Identities=16%  Similarity=0.130  Sum_probs=59.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC-------CCcccccchhhhcccH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP-------DPHFKRCKYKWRIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~-------d~~f~~~h~~~~~~~~   84 (169)
                      +.+|||||||+|     ++...|..+|+|+|+|+.|++.|++++. ..++.+.+...       +..||..-...-...+
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~~~~~  125 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAVASLS  125 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccccCHH
Confidence            678999999999     5566788999999999999999998765 22222221111       1123321110000126


Q ss_pred             HHHHHHHHhccCCcEEEEEe
Q psy13086         85 NLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .++++++++|||||.+++..
T Consensus       126 ~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        126 DLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             HHHHHHHHhcCCCeEEEEEe
Confidence            89999999999999999875

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.41  E-value=1.3e-12  Score=103.52  Aligned_cols=86  Identities=19%  Similarity=0.231  Sum_probs=59.5

Q ss_pred             CCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-cccceE--------EEeCCCCcccccc------
Q psy13086         18 KVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-LYLKKM--------FFLYPDPHFKRCK------   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~~~d~v--------~~~f~d~~f~~~h------   76 (169)
                      +.+|||||||+|     +++.. |+.+++|+|+|+.|++.|++++. ..++.+        .+.+++..||...      
T Consensus        46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  125 (231)
T TIGR02752        46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLR  125 (231)
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccc
Confidence            679999999999     55554 66799999999999999988764 111111        1223333444321      


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      +..  ....+++++.++|||||.+++.+.
T Consensus       126 ~~~--~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       126 NVP--DYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             cCC--CHHHHHHHHHHHcCcCeEEEEEEC
Confidence            111  125789999999999999988753

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.40  E-value=1.2e-12  Score=105.21  Aligned_cols=88  Identities=17%  Similarity=0.128  Sum_probs=60.3

Q ss_pred             CCeEEEEcCccc-ccCc--CCCCcEEEEeCCHHHHHHHHHHhc----cccceEEEeCCCCccccc------chhhhcccH
Q psy13086         18 KVEFVDVGCGKL-YLPM--FPSTLILGLEIRVKVSDYVIDEWS----LYLKKMFFLYPDPHFKRC------KYKWRIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~~--~p~~~v~GiDis~~~l~~a~~~~~----~~~d~v~~~f~d~~f~~~------h~~~~~~~~   84 (169)
                      ..+|||||||+| ++..  ....+++|+|+|+.|++.|+++..    ...|...+.+++..||..      |+..  ...
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~--d~~  120 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCG--NLS  120 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcC--CHH
Confidence            578999999999 2221  135799999999999999988753    111222234444445432      2211  136


Q ss_pred             HHHHHHHHhccCCcEEEEEeCCh
Q psy13086         85 NLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                      .+++++.++|||||.+++++...
T Consensus       121 ~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258        121 TALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             HHHHHHHHHcCCCeEEEEEeCCC
Confidence            79999999999999999987543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.39  E-value=2.2e-12  Score=91.90  Aligned_cols=87  Identities=14%  Similarity=0.098  Sum_probs=58.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC---------CCcccccchhhh-c
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP---------DPHFKRCKYKWR-I   81 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~---------d~~f~~~h~~~~-~   81 (169)
                      +.+|||||||+|     +++.+|..+++|+|+|+.+++.|++++. ..++.+.+...         .+.||..-.... -
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~   99 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG   99 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence            568999999999     6667788899999999999999987764 11222221101         112332110000 0


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ...+++++++++|||||.|++..
T Consensus       100 ~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469       100 LLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             hHHHHHHHHHHHcCCCCEEEEEe
Confidence            12579999999999999998853

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.37  E-value=8.5e-12  Score=97.00  Aligned_cols=103  Identities=14%  Similarity=0.101  Sum_probs=66.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCC---------Ccccccchhhhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPD---------PHFKRCKYKWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d---------~~f~~~h~~~~~   81 (169)
                      ++.+|||+|||+|     ++...|+..++|+|+|+.|++.|++++. ..++.+.+...|         +.++........
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~  119 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGGR  119 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECCc
Confidence            4678999999999     4555677899999999999999998765 122222211110         111111110000


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE  119 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~  119 (169)
                      ....+++++.++|+|||.+++.+...+......+.+..
T Consensus       120 ~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~  157 (196)
T PRK07402        120 PIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQ  157 (196)
T ss_pred             CHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHh
Confidence            12689999999999999999987655443334444443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.36  E-value=5.7e-12  Score=101.79  Aligned_cols=86  Identities=12%  Similarity=0.089  Sum_probs=58.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc-cceEEE---------eCCCCccccc------
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY-LKKMFF---------LYPDPHFKRC------   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~-~d~v~~---------~f~d~~f~~~------   75 (169)
                      +.+|||||||+|     ++..  ..+|+|+|+|+.|++.|++++. .. .+.+.+         .+++..||..      
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl  122 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL  122 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence            578999999999     4443  5799999999999999988764 11 111111         1223344432      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                      |+..  ....+++++.++|||||.+++...+.
T Consensus       123 ~~~~--~~~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        123 EWVA--DPKSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             HhhC--CHHHHHHHHHHHcCCCeEEEEEEECc
Confidence            1111  12578999999999999998875443

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.35  E-value=4.1e-12  Score=108.35  Aligned_cols=97  Identities=15%  Similarity=0.202  Sum_probs=66.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPD   69 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d   69 (169)
                      ..+|||+|||+|     +++++|+.+|+|+|+|+.|++.|++++.                       .++|.|.   .+
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIl---sN  305 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVL---CN  305 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEE---EC
Confidence            358999999999     6778899999999999999999998753                       0122222   22


Q ss_pred             CcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC-hHHHHHHHHHH
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV-KDLHDWIVSHF  117 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~-~~~~~~~~~~~  117 (169)
                      |-|...+....-+..++++++.++|+|||.|+++... -.|...+.+.+
T Consensus       306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~f  354 (378)
T PRK15001        306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF  354 (378)
T ss_pred             cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHc
Confidence            3222211111112357899999999999999998643 34665555543

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.34  E-value=8e-12  Score=100.91  Aligned_cols=108  Identities=15%  Similarity=0.154  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeCCCCcccccchhh-hcccHHHHHH
Q psy13086         17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLYPDPHFKRCKYKW-RIINQNLLSE   89 (169)
Q Consensus        17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f~d~~f~~~h~~~-~~~~~~~l~~   89 (169)
                      ++.+|||||||+|    .+.......++|+|+|+.|++.|++++. ..+ +.+.+...+..||.....- .-....++++
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~~~~~l~~~  198 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILANPLLELAPD  198 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHHHHHHHHHH
Confidence            4679999999999    2222333469999999999999998876 333 3344433333344321100 0012568899


Q ss_pred             HHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         90 YAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        90 ~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                      +.++|||||.++++.........+...+..++ |..
T Consensus       199 ~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~G-f~~  233 (250)
T PRK00517        199 LARLLKPGGRLILSGILEEQADEVLEAYEEAG-FTL  233 (250)
T ss_pred             HHHhcCCCcEEEEEECcHhhHHHHHHHHHHCC-CEE
Confidence            99999999999998665555555666666553 544

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.34  E-value=2e-12  Score=98.65  Aligned_cols=85  Identities=14%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPH   71 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~   71 (169)
                      +..+|||+|||+|     +++..|+.+++++|+|+.+++.|++++.                    ..+|.|.++-|   
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP---  107 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPP---  107 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE------
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccc---
Confidence            3678999999999     7778888899999999999999988765                    23333333211   


Q ss_pred             ccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         72 FKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        72 f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +............+++++..+.|||||.|+++.
T Consensus       108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen  108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI  140 (170)
T ss_dssp             SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence            111111001124689999999999999998764

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK05785 hypothetical protein; Provisional

Probab=99.34  E-value=5.5e-12  Score=100.62  Aligned_cols=78  Identities=13%  Similarity=0.132  Sum_probs=53.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCCCccccc------chhhhcccHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPDPHFKRC------KYKWRIINQN   85 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d~~f~~~------h~~~~~~~~~   85 (169)
                      +.+|||||||||     ++..+ +.+|+|+|+|++|++.|+++.. ...|...++|++..||..      |+..  ..+.
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~--d~~~  128 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASD--NIEK  128 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccC--CHHH
Confidence            578999999999     44444 5699999999999999987632 111222234555555531      2111  1368


Q ss_pred             HHHHHHHhccCCc
Q psy13086         86 LLSEYAYVLSEGG   98 (169)
Q Consensus        86 ~l~~~~rvLkpGG   98 (169)
                      +++|++|+|||.+
T Consensus       129 ~l~e~~RvLkp~~  141 (226)
T PRK05785        129 VIAEFTRVSRKQV  141 (226)
T ss_pred             HHHHHHHHhcCce
Confidence            9999999999953

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.33  E-value=3.6e-12  Score=100.41  Aligned_cols=101  Identities=18%  Similarity=0.289  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceE-----------EEeCCCCcccccchh
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKM-----------FFLYPDPHFKRCKYK   78 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v-----------~~~f~d~~f~~~h~~   78 (169)
                      +....|.|+|||+|     |++++|++.++|||-|+.|++.|+++++ .++...           .+.|++-.   .||.
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAv---lqWl  105 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAV---LQWL  105 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhh---hhhc
Confidence            44678999999999     9999999999999999999999998876 222111           11222211   1222


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeCC---hHHHHHHHHHHhcCC
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITDV---KDLHDWIVSHFTEHP  121 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~---~~~~~~~~~~~~~~~  121 (169)
                      .  .+..+|..+...|.|||.|.++.+.   +..+.-|++...+.|
T Consensus       106 p--dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p  149 (257)
T COG4106         106 P--DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAP  149 (257)
T ss_pred             c--ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCc
Confidence            1  2478999999999999999998632   334555776665444

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.33  E-value=6.8e-12  Score=97.81  Aligned_cols=83  Identities=11%  Similarity=0.069  Sum_probs=53.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc--eEE-----EeCCCCcccc------cchh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK--KMF-----FLYPDPHFKR------CKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d--~v~-----~~f~d~~f~~------~h~~   78 (169)
                      +.+|||||||+|     ++++  +.+|+|+|+|+.|++.|++++. ..++  ...     ..+ ++.||.      .|+.
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~  107 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMFL  107 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEecccccC
Confidence            568999999999     4443  5799999999999999876543 1111  100     111 123332      1211


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ..-....++++++++|||||.+++.
T Consensus       108 ~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       108 QAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            1101257999999999999997665

Part of a tellurite-reducing operon tehA and tehB

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.32  E-value=1.1e-11  Score=95.88  Aligned_cols=88  Identities=17%  Similarity=0.163  Sum_probs=59.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe------C-CCCcccccchhhhcccH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL------Y-PDPHFKRCKYKWRIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~------f-~d~~f~~~h~~~~~~~~   84 (169)
                      +.+|||||||+|     ++...|+.+|+|+|+|+.|++.|++++. ..++.+.+.      + .+..||..-...-...+
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~~~~~~  122 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRALASLN  122 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehhhhCHH
Confidence            578999999999     5666788899999999999999887654 122222211      1 12233321111000125


Q ss_pred             HHHHHHHHhccCCcEEEEEeC
Q psy13086         85 NLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      .+++.+.++|+|||.+++...
T Consensus       123 ~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138       123 VLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             HHHHHHHHhcCCCCEEEEEcC
Confidence            788999999999999998753

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.32  E-value=6e-12  Score=103.14  Aligned_cols=89  Identities=15%  Similarity=0.221  Sum_probs=64.7

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEeCCC--Ccccccc------
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFLYPD--PHFKRCK------   76 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~f~d--~~f~~~h------   76 (169)
                      ++++.+|||||||.|     +|+++ +++|+|+++|+++.+.|++++.     ..++.....+.+  ..||..-      
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfE  148 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFE  148 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHH
Confidence            667899999999999     66777 8999999999999999999876     233333323322  2355421      


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |.-.-..+.+|+.++++|+|||.+.+.+
T Consensus       149 hvg~~~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         149 HVGKENYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             HhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence            1111013789999999999999998875

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.31  E-value=9.5e-12  Score=97.12  Aligned_cols=83  Identities=10%  Similarity=0.068  Sum_probs=54.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc---cceEEE-----eCCCCccccc------ch
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY---LKKMFF-----LYPDPHFKRC------KY   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~---~d~v~~-----~f~d~~f~~~------h~   77 (169)
                      +.+|||+|||+|     ++++  ..+|+|+|+|+.|++.|++++. ..   +..+..     .++ ..||..      |+
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~  107 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF  107 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence            578999999999     4443  5699999999999999987654 11   111111     111 224421      22


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ...-....++++++++|||||.+++.
T Consensus       108 ~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        108 LEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            11111368999999999999997654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.30  E-value=1.3e-11  Score=97.23  Aligned_cols=87  Identities=24%  Similarity=0.284  Sum_probs=61.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceE-----EEeCCCCccccc------chhhhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKM-----FFLYPDPHFKRC------KYKWRI   81 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v-----~~~f~d~~f~~~------h~~~~~   81 (169)
                      ..+|||||||+|     ++...|...++|+|+|+.|++.++++....+..+     ...+++..||..      |+..  
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~--  112 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD--  112 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc--
Confidence            468999999999     6677788899999999999999987653111111     122334444431      1111  


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ....+++++.++|||||.+++.+..
T Consensus       113 ~~~~~l~~~~~~L~~~G~l~~~~~~  137 (240)
T TIGR02072       113 DLSQALSELARVLKPGGLLAFSTFG  137 (240)
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            1357999999999999999998643

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.30  E-value=6.3e-12  Score=109.72  Aligned_cols=87  Identities=21%  Similarity=0.297  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc--------ccceEEEeCCCCcccccchhhhc--
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL--------YLKKMFFLYPDPHFKRCKYKWRI--   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~--------~~d~v~~~f~d~~f~~~h~~~~~--   81 (169)
                      ++.+|||||||+|     ++..+ +.+++|+|+|+.|++.|+++..+        ..|.....+++..||.......+  
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h  344 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH  344 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence            3678999999999     45444 67999999999999999876541        11111223445456542211111  


Q ss_pred             --ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         82 --INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        82 --~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        ....++++++|+|||||.+++.+
T Consensus       345 ~~d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        345 IQDKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             cCCHHHHHHHHHHHcCCCeEEEEEE
Confidence              13689999999999999999875

>PRK04266 fibrillarin; Provisional

Probab=99.30  E-value=1.1e-11  Score=98.98  Aligned_cols=87  Identities=7%  Similarity=0.049  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCC--------CCccccc-chhhh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYP--------DPHFKRC-KYKWR   80 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~--------d~~f~~~-h~~~~   80 (169)
                      ++.+|||+|||+|     ++...+...|+|+|+|+.|++.+.+++.  ..+..+.-...        +..+|.. |....
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~  151 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQ  151 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCC
Confidence            3679999999999     6666666689999999999986654432  11111100000        0112221 10000


Q ss_pred             c-ccHHHHHHHHHhccCCcEEEEE
Q psy13086         81 I-INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        81 ~-~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      - ....++++++|+|||||.++++
T Consensus       152 p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        152 PNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             hhHHHHHHHHHHHhcCCCcEEEEE
Confidence            0 0124689999999999999994

>PRK06922 hypothetical protein; Provisional

Probab=99.29  E-value=5.2e-12  Score=113.34  Aligned_cols=87  Identities=17%  Similarity=0.137  Sum_probs=61.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc---cc-----ceEEEe--CCCCccccc------c
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL---YL-----KKMFFL--YPDPHFKRC------K   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~---~~-----d~v~~~--f~d~~f~~~------h   76 (169)
                      +.+|||||||+|     ++..+|+.+++|+|+|+.|++.|++++..   .+     |...++  |++..||..      |
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH  498 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH  498 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence            578999999999     66778999999999999999999876531   11     211122  444445532      1


Q ss_pred             hhh-----------hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKW-----------RIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~-----------~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +..           .-....++++++++|||||.+++..
T Consensus       499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            110           0013679999999999999999974

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.28  E-value=3.1e-11  Score=97.36  Aligned_cols=100  Identities=19%  Similarity=0.289  Sum_probs=73.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEEeC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFFLY   67 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~~f   67 (169)
                      +..+|||+|||+|     +|++.+.+.++|||+.+.|.+.|++++.                        .++|.|..+ 
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N-  122 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN-  122 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC-
Confidence            3688999999999     7888888999999999999999987653                        446666542 


Q ss_pred             CCCcccc------------cchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc
Q psy13086         68 PDPHFKR------------CKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE  119 (169)
Q Consensus        68 ~d~~f~~------------~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~  119 (169)
                       .|.|+.            .+|.-....+++++...++|||||.++++...+...+ ..+.+..
T Consensus       123 -PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~e-i~~~l~~  184 (248)
T COG4123         123 -PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAE-IIELLKS  184 (248)
T ss_pred             -CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHH-HHHHHHh
Confidence             223321            1222233358899999999999999999987666655 3344444

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.28  E-value=2.1e-11  Score=102.91  Aligned_cols=96  Identities=17%  Similarity=0.208  Sum_probs=65.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------cccceEEEeCCCCcccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------LYLKKMFFLYPDPHFKR   74 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------~~~d~v~~~f~d~~f~~   74 (169)
                      ..+|||+|||+|     +++++|..+++|+|+|+.|++.|++++.                  +.+|.|..   +|-|..
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvs---NPPFH~  273 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIIS---NPPFHD  273 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEE---CCCccC
Confidence            357999999999     6677888899999999999999987654                  22333332   221210


Q ss_pred             -cchhhhcccHHHHHHHHHhccCCcEEEEEeCC-hHHHHHHHHHH
Q psy13086         75 -CKYKWRIINQNLLSEYAYVLSEGGIVYTITDV-KDLHDWIVSHF  117 (169)
Q Consensus        75 -~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~-~~~~~~~~~~~  117 (169)
                       .... .-....+++++.++|||||.|+++... ..|..++.+.+
T Consensus       274 g~~~~-~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~F  317 (342)
T PRK09489        274 GIQTS-LDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETF  317 (342)
T ss_pred             Ccccc-HHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHc
Confidence             0000 001368999999999999999998643 34655554444

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.28  E-value=7.6e-12  Score=98.68  Aligned_cols=82  Identities=16%  Similarity=0.244  Sum_probs=58.4

Q ss_pred             eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEE-----eCCCCcccccc------hh
Q psy13086         20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFF-----LYPDPHFKRCK------YK   78 (169)
Q Consensus        20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~-----~f~d~~f~~~h------~~   78 (169)
                      +|||||||+|     +++.+|+.+++|+|+|+.+++.|++++.     ..+..+..     .++ ..||...      +.
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~   80 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI   80 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence            6999999999     6667788899999999999999998764     11111111     112 2344322      11


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..  ...++++++++|||||.+++.+
T Consensus        81 ~~--~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       81 KD--KMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             CC--HHHHHHHHHHHcCCCCEEEEEE
Confidence            11  2679999999999999999875

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.28  E-value=3.6e-12  Score=88.87  Aligned_cols=73  Identities=22%  Similarity=0.303  Sum_probs=46.4

Q ss_pred             EEEEcCccc-----ccCcC---CCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCcc
Q psy13086         21 FVDVGCGKL-----YLPMF---PSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        21 iLDiGCG~G-----la~~~---p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~f   72 (169)
                      |||+|||+|     ++..+   |..+++|+|+|+.|++.|+++..                    +++|.|......   
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~---   77 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLS---   77 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTG---
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCc---
Confidence            799999999     44443   55899999999999999988752                    344444332110   


Q ss_pred             cccchhhhcccHHHHHHHHHhccCCc
Q psy13086         73 KRCKYKWRIINQNLLSEYAYVLSEGG   98 (169)
Q Consensus        73 ~~~h~~~~~~~~~~l~~~~rvLkpGG   98 (169)
                        .++...-....++++++++|||||
T Consensus        78 --~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   78 --LHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             --GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             --cCCCCHHHHHHHHHHHHHHhCCCC
Confidence              111111113689999999999998

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.27  E-value=3e-11  Score=92.55  Aligned_cols=102  Identities=18%  Similarity=0.152  Sum_probs=63.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------cccceEEEeCCCCccc-
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------LYLKKMFFLYPDPHFK-   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------~~~d~v~~~f~d~~f~-   73 (169)
                      ..+|||+|||+|     ++...+  +++|+|+|+.|++.|++++.                  .++|.|....|-.... 
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~   97 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLED   97 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcc
Confidence            468999999999     444443  89999999999999988753                  3455544321110000 


Q ss_pred             --cc-chh---------hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         74 --RC-KYK---------WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        74 --~~-h~~---------~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                        .. ++.         .......+++++.++|||||.+++......-...+...+.+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~g  157 (179)
T TIGR00537        98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERG  157 (179)
T ss_pred             hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCC
Confidence              00 000         0111367899999999999999987644331233445555443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.26  E-value=1.2e-11  Score=101.46  Aligned_cols=89  Identities=16%  Similarity=0.221  Sum_probs=55.6

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEE---eCC--CCccccc------c
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFF---LYP--DPHFKRC------K   76 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~---~f~--d~~f~~~------h   76 (169)
                      +.++.+|||||||.|     +|+++ +++|+||.+|++..+.|++++.  +--+.+.+   .|.  ++.||..      .
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~E  138 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFE  138 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGG
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechh
Confidence            345789999999999     66776 7899999999999999998876  21122222   221  1234431      1


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |...-..+.+++++.++|||||++++.+
T Consensus       139 hvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  139 HVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             GTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             hcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            1111113689999999999999998864

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.26  E-value=3.7e-11  Score=99.03  Aligned_cols=107  Identities=10%  Similarity=0.166  Sum_probs=68.2

Q ss_pred             CCeEEEEcCccc-c---cCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc-eEEE------eCCCCcccccchhh-hcccH
Q psy13086         18 KVEFVDVGCGKL-Y---LPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK-KMFF------LYPDPHFKRCKYKW-RIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-l---a~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~------~f~d~~f~~~h~~~-~~~~~   84 (169)
                      +.+|||||||+| +   +......+++|+|+|+.|++.|++++. ..+. .+..      .+.+..||.....- .-...
T Consensus       160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~l~  239 (288)
T TIGR00406       160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEVIK  239 (288)
T ss_pred             CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHHHH
Confidence            579999999999 2   223344689999999999999998765 1111 1111      11222344321100 00124


Q ss_pred             HHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086         85 NLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      .++.++.++|||||.++++.....-...+.+.+..+  |+..
T Consensus       240 ~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~--f~~~  279 (288)
T TIGR00406       240 ELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG--FTVV  279 (288)
T ss_pred             HHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc--Ccee
Confidence            689999999999999999876655555566666544  5543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.26  E-value=3.1e-11  Score=98.18  Aligned_cols=89  Identities=12%  Similarity=0.068  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc-cccceEE--------EeCCCCcccccchhhh
Q psy13086         16 EKKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS-LYLKKMF--------FLYPDPHFKRCKYKWR   80 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~--------~~f~d~~f~~~h~~~~   80 (169)
                      .++.+|||||||+|     ++.. .+..+++|+|+|+.|++.|+++.. ..++.+.        +.+++..||.......
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v  155 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV  155 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence            35789999999999     3333 355689999999999999998754 1111111        2334444543221100


Q ss_pred             ---c-ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         81 ---I-INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        81 ---~-~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                         . ....+++++.|+|||||+|++.+
T Consensus       156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        156 INLSPDKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             ccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence               0 12579999999999999999864

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.25  E-value=7.9e-11  Score=91.82  Aligned_cols=105  Identities=13%  Similarity=0.129  Sum_probs=66.6

Q ss_pred             CCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc-cc-cceEEE---eCC------CCcccccch-h
Q psy13086         17 KKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS-LY-LKKMFF---LYP------DPHFKRCKY-K   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~-~~-~d~v~~---~f~------d~~f~~~h~-~   78 (169)
                      ++.+|||+|||+|     ++.. .+..+++|+|+++.|++.|++++. .. .+.+.+   ...      ++.||.... .
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~  119 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG  119 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence            4678999999999     3333 356799999999999999988765 11 122221   111      122332111 0


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      .......+++++.++|||||++++.+...+........+.+++
T Consensus       120 ~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g  162 (198)
T PRK00377        120 GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIG  162 (198)
T ss_pred             CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcC
Confidence            0001367999999999999999886544444455566665554

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.25  E-value=2.5e-11  Score=102.24  Aligned_cols=85  Identities=20%  Similarity=0.106  Sum_probs=58.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceE-----EEeCCCCccccc------chhhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKM-----FFLYPDPHFKRC------KYKWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v-----~~~f~d~~f~~~------h~~~~   80 (169)
                      +.+|||||||+|     +++..+..+++|+|+|+.|++.|+++.. ..+..+     .+.+++..||..      |+.. 
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~-  192 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP-  192 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC-
Confidence            568999999999     5556677899999999999999987643 111111     122333334421      1111 


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEe
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       ....++++++|+|||||.+++..
T Consensus       193 -d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        193 -DPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             -CHHHHHHHHHHhcCCCcEEEEEE
Confidence             12579999999999999998864

>TIGR00452 methyltransferase, putative

Probab=99.25  E-value=2.7e-11  Score=101.12  Aligned_cols=84  Identities=17%  Similarity=0.041  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH--H-hc--cccceE-----EEeCCCCccccc------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID--E-WS--LYLKKM-----FFLYPDPHFKRC------   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~--~-~~--~~~d~v-----~~~f~d~~f~~~------   75 (169)
                      ++.+|||||||+|     ++...+ ..|+|||+|+.|+..++.  + +.  ..+..+     .+.. ...||..      
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL  198 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVL  198 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchh
Confidence            3679999999999     334433 379999999999876532  1 11  000000     0111 1234421      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +|...  ...+|++++++|||||.|++.+
T Consensus       199 ~H~~d--p~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       199 YHRKS--PLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             hccCC--HHHHHHHHHHhcCCCCEEEEEE
Confidence            22211  2579999999999999999875

Known examples to date are restricted to the proteobacteria.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.24  E-value=6.8e-11  Score=94.37  Aligned_cols=106  Identities=10%  Similarity=0.087  Sum_probs=66.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~f   72 (169)
                      ..+|||+|||+|     ++..+|..+++|+|+|+.|++.|++++.                    .++|.|..+.|--..
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~  167 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIPE  167 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCch
Confidence            458999999999     6677788999999999999999987643                    234444332110000


Q ss_pred             cccch----hh------h--------cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         73 KRCKY----KW------R--------IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        73 ~~~h~----~~------~--------~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                      ...+.    .+      .        .....+++++.++|+|||.+++....... ..+.+.+..++ |..
T Consensus       168 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~-~~~~~~l~~~g-f~~  236 (251)
T TIGR03534       168 ADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQG-EAVRALFEAAG-FAD  236 (251)
T ss_pred             hhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHH-HHHHHHHHhCC-CCc
Confidence            00000    00      0        00146889999999999999997644332 33455555443 543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>KOG4300|consensus

Probab=99.23  E-value=5.8e-11  Score=93.12  Aligned_cols=81  Identities=17%  Similarity=0.189  Sum_probs=55.9

Q ss_pred             CeEEEEcCccc-ccCcC---CCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCCCc
Q psy13086         19 VEFVDVGCGKL-YLPMF---PSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPDPH   71 (169)
Q Consensus        19 ~~iLDiGCG~G-la~~~---p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d~~   71 (169)
                      ..+|||||||| --+.+   |..+|+++|.+++|-+.|.+++.                       +++|.|.-.|--  
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL--  155 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL--  155 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE--
Confidence            45799999999 33333   67899999999999999876543                       344443211100  


Q ss_pred             ccccchhhhcccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         72 FKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        72 f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                        ..+.    ...+.|+++.|+|||||++++.....
T Consensus       156 --CSve----~~~k~L~e~~rlLRpgG~iifiEHva  185 (252)
T KOG4300|consen  156 --CSVE----DPVKQLNEVRRLLRPGGRIIFIEHVA  185 (252)
T ss_pred             --eccC----CHHHHHHHHHHhcCCCcEEEEEeccc
Confidence              0000    02579999999999999999987654

>PRK08317 hypothetical protein; Provisional

Probab=99.23  E-value=3.8e-11  Score=94.28  Aligned_cols=88  Identities=20%  Similarity=0.283  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc---ccc-----ceEEEeCCCCcccccchhhhc-
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS---LYL-----KKMFFLYPDPHFKRCKYKWRI-   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~---~~~-----d~v~~~f~d~~f~~~h~~~~~-   81 (169)
                      ++.+|||+|||+|     ++..+ |..+++|+|+|+.+++.|+++..   ..+     |.-...+++..||..+....+ 
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~   98 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQ   98 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhh
Confidence            3678999999999     55555 67899999999999999988732   111     111122334445532211100 


Q ss_pred             ---ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         82 ---INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        82 ---~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                         ....++++++++|||||.+++..
T Consensus        99 ~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         99 HLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             ccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence               13679999999999999998864

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.22  E-value=1.2e-10  Score=95.82  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=68.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPH   71 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~   71 (169)
                      ..+|||+|||+|     ++...|+.+++|+|+|+.|++.|++++.                     .++|.|..+-  |+
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NP--Py  199 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNP--PY  199 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECC--CC
Confidence            468999999999     6677788999999999999999988754                     1233333211  11


Q ss_pred             ccc---------cchhhh----------cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086         72 FKR---------CKYKWR----------IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        72 f~~---------~h~~~~----------~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      ...         .++...          -....+++++.++|+|||.+++......  ....+.+..++ |.|.
T Consensus       200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~--~~v~~~~~~~~-~~~~  270 (284)
T TIGR03533       200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM--EALEEAYPDVP-FTWL  270 (284)
T ss_pred             CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH--HHHHHHHHhCC-Ccee
Confidence            110         000000          0125689999999999999999776433  34555665543 5664

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.22  E-value=2.7e-11  Score=89.84  Aligned_cols=120  Identities=13%  Similarity=0.089  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------cccceEEEeCCCCcccccchh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------LYLKKMFFLYPDPHFKRCKYK   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------~~~d~v~~~f~d~~f~~~h~~   78 (169)
                      +..+|||||||+|     ++..  ..+++|+|+|+.|++.  .+..             +++|.|.....-      ||.
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~i~~~~~l------~~~   91 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK--RNVVFDNFDAQDPPFPDGSFDLIICNDVL------EHL   91 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH--TTSEEEEEECHTHHCHSSSEEEEEEESSG------GGS
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh--hhhhhhhhhhhhhhccccchhhHhhHHHH------hhc
Confidence            3689999999999     4333  3499999999999987  1111             566666554322      222


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEK  158 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i  158 (169)
                      .+  ...++++++++|||||.+++.+......  ....+.... +....      .  -+....+...++..+.+.|.++
T Consensus        92 ~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~-~~~~~------~--~~~~~~~~~~~~~ll~~~G~~i  158 (161)
T PF13489_consen   92 PD--PEEFLKELSRLLKPGGYLVISDPNRDDP--SPRSFLKWR-YDRPY------G--GHVHFFSPDELRQLLEQAGFEI  158 (161)
T ss_dssp             SH--HHHHHHHHHHCEEEEEEEEEEEEBTTSH--HHHHHHHCC-GTCHH------T--TTTEEBBHHHHHHHHHHTTEEE
T ss_pred             cc--HHHHHHHHHHhcCCCCEEEEEEcCCcch--hhhHHHhcC-CcCcc------C--ceeccCCHHHHHHHHHHCCCEE
Confidence            21  3689999999999999999998654211  111112111 11100      0  0123466778888888888776


Q ss_pred             E
Q psy13086        159 F  159 (169)
Q Consensus       159 ~  159 (169)
                      -
T Consensus       159 v  159 (161)
T PF13489_consen  159 V  159 (161)
T ss_dssp             E
T ss_pred             E
Confidence            3

...

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.20  E-value=5.8e-11  Score=101.60  Aligned_cols=87  Identities=14%  Similarity=0.154  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc-ccceEEEeCC--CCccccc------chhhhcc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL-YLKKMFFLYP--DPHFKRC------KYKWRII   82 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~-~~d~v~~~f~--d~~f~~~------h~~~~~~   82 (169)
                      ++.+|||||||+|     +++. .+.+|+|+|+|+.|++.|++++.+ .++.....+.  +..||..      ++...-.
T Consensus       167 ~g~rVLDIGcG~G~~a~~la~~-~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~~~  245 (383)
T PRK11705        167 PGMRVLDIGCGWGGLARYAAEH-YGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGPKN  245 (383)
T ss_pred             CCCEEEEeCCCccHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCChHH
Confidence            3679999999999     4433 367999999999999999987641 1111111111  1233321      1110001


Q ss_pred             cHHHHHHHHHhccCCcEEEEEe
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .+.+++++.++|||||.+++.+
T Consensus       246 ~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        246 YRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEE
Confidence            2578999999999999999875

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.20  E-value=5.7e-11  Score=97.74  Aligned_cols=84  Identities=11%  Similarity=0.113  Sum_probs=53.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc--ceEEEeC----CCCccccc------chhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL--KKMFFLY----PDPHFKRC------KYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~--d~v~~~f----~d~~f~~~------h~~~   79 (169)
                      +.+|||||||+|     ++.  .+.+|+|+|+|+.|++.|++++. ..+  ..+....    .+..||..      |+..
T Consensus       121 ~~~vLDlGcG~G~~~~~la~--~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~  198 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLAL--LGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLN  198 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCC
Confidence            458999999999     443  35799999999999999987654 111  1111000    01223321      1111


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEE
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .-..+.+++++.++|+|||.+++.
T Consensus       199 ~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        199 RERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            001257999999999999997665

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.20  E-value=6.6e-11  Score=92.90  Aligned_cols=86  Identities=14%  Similarity=0.135  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-cccc-eEEEe---C-----CCCcccccchhhh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYLK-KMFFL---Y-----PDPHFKRCKYKWR   80 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~~---f-----~d~~f~~~h~~~~   80 (169)
                      ++.+|||||||+|     +++..+ ..+|+|+|+++.|++.|++++. ..++ .+.+.   .     .+..||...... 
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~-  150 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA-  150 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc-
Confidence            3579999999999     454443 5699999999999999998875 1121 12211   1     112344321110 


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEe
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       ....+.+++.++|+|||++++..
T Consensus       151 -~~~~~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        151 -AASTIPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             -CcchhhHHHHHhcCcCcEEEEEE
Confidence             12356678999999999998853

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=9.2e-11  Score=96.64  Aligned_cols=101  Identities=14%  Similarity=0.262  Sum_probs=70.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccce--EE-------------EeCCCCcccccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKK--MF-------------FLYPDPHFKRCK   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~--v~-------------~~f~d~~f~~~h   76 (169)
                      ..+|||+|||.|     +++.+|+.+++-+|+|..+++.|++++. +.++.  +.             +..++|-|..-+
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPPfh~G~  238 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGK  238 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEEeCCCccCCc
Confidence            358999999999     8899999999999999999999999876 33332  11             112333332211


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEeC-ChHHHHHHHHHHh
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTITD-VKDLHDWIVSHFT  118 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d-~~~~~~~~~~~~~  118 (169)
                      ....-+..+++++..+.|++||.|+|+.. ...|..-|.+.|.
T Consensus       239 ~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg  281 (300)
T COG2813         239 AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG  281 (300)
T ss_pred             chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence            11111235899999999999999999875 3456665655554

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.18  E-value=6.9e-11  Score=83.79  Aligned_cols=83  Identities=22%  Similarity=0.237  Sum_probs=56.5

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEEeCCC
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFFLYPD   69 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~~f~d   69 (169)
                      .+|||+|||+|     +++.. ..+++|+|+++..++.|+.+++                        .++|.|..+-  
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np--   78 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP--   78 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE----
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC--
Confidence            57999999999     34444 6899999999999999987643                        3444444322  


Q ss_pred             Ccccccchh--hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         70 PHFKRCKYK--WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        70 ~~f~~~h~~--~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |+....+..  ..-....+++++.++|||||.+++.+
T Consensus        79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            222111100  01124689999999999999999876

...

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.18  E-value=5.8e-11  Score=93.43  Aligned_cols=84  Identities=12%  Similarity=0.020  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----cccceEEEeCCCCccccc------chhhhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----LYLKKMFFLYPDPHFKRC------KYKWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----~~~d~v~~~f~d~~f~~~------h~~~~~   81 (169)
                      +..+|||||||+|     ++...|..+++|||+|+.|++.|+++++    ...|... .+++..||..      +|...-
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~  121 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPD  121 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHH
Confidence            3578999999999     5555678899999999999999998754    1111111 3444455531      221111


Q ss_pred             ccHHHHHHHHHhccCCcEEEEE
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ....+++++.|++  ++.+++.
T Consensus       122 ~~~~~l~el~r~~--~~~v~i~  141 (204)
T TIGR03587       122 NLPTAYRELYRCS--NRYILIA  141 (204)
T ss_pred             HHHHHHHHHHhhc--CcEEEEE
Confidence            1357888898887  4566554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.18  E-value=1.5e-10  Score=91.37  Aligned_cols=90  Identities=11%  Similarity=0.006  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCH-----------------HHHHHHHHHhc-cccceEEEeCCCCcc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRV-----------------KVSDYVIDEWS-LYLKKMFFLYPDPHF   72 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~-----------------~~l~~a~~~~~-~~~d~v~~~f~d~~f   72 (169)
                      ++.+|||||||||     ++++. +...|+|||+++                 .+++.+++.+. .++|.|.......+.
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~  130 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMS  130 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccC
Confidence            3678999999999     44554 457999999995                 22333333333 578877653321111


Q ss_pred             cc---cchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         73 KR---CKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        73 ~~---~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ..   .+.........+++++.++|||||.|++....
T Consensus       131 g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~  167 (209)
T PRK11188        131 GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ  167 (209)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            10   00000001257999999999999999997543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.16  E-value=1.1e-10  Score=97.73  Aligned_cols=83  Identities=17%  Similarity=0.113  Sum_probs=53.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH--Hhc---cccceE-----EEeCCCCcccc------cc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID--EWS---LYLKKM-----FFLYPDPHFKR------CK   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~--~~~---~~~d~v-----~~~f~d~~f~~------~h   76 (169)
                      +.+|||||||+|     ++...+. .|+|||+|+.|+..++.  +..   ..+..+     .+.+ +..||.      .|
T Consensus       123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~  200 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY  200 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence            679999999999     4455443 69999999999876532  211   111111     1122 233443      22


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |...  ...++++++++|||||.+++.+
T Consensus       201 H~~d--p~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        201 HRRS--PLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ccCC--HHHHHHHHHHhcCCCcEEEEEE
Confidence            2221  3679999999999999999864

>TIGR03438 probable methyltransferase

Probab=99.16  E-value=1.2e-10  Score=96.57  Aligned_cols=88  Identities=13%  Similarity=0.106  Sum_probs=56.5

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhccc-----cceEEEeCCC------Ccc---c----
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWSLY-----LKKMFFLYPD------PHF---K----   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~~~-----~d~v~~~f~d------~~f---~----   73 (169)
                      +.+|||+|||||     ++...+ ..+++|||+|+.|++.|++++...     +..+.-.+.+      +..   .    
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~  143 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF  143 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence            468999999999     555555 579999999999999998875411     1111111111      110   0    


Q ss_pred             ---ccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         74 ---RCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        74 ---~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                         ..++...-....+|++++++|+|||.|+|..|
T Consensus       144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence               00110111125699999999999999998654

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.15  E-value=1.1e-10  Score=92.01  Aligned_cols=86  Identities=14%  Similarity=0.197  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC--------CCcccccchhhhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP--------DPHFKRCKYKWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~--------d~~f~~~h~~~~~   81 (169)
                      ++.+|||||||+|     ++...+ +.+|+|+|+++.|++.|++++. ..++.+.+...        ...||......  
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~--  154 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA--  154 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC--
Confidence            4689999999999     555543 4679999999999999998865 22232222111        11233221110  


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ......+.+.+.|||||++++..
T Consensus       155 ~~~~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       155 AGPKIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             CcccccHHHHHhcCcCcEEEEEE
Confidence            12346677889999999998864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.14  E-value=9.3e-10  Score=85.54  Aligned_cols=143  Identities=15%  Similarity=0.023  Sum_probs=88.8

Q ss_pred             CCCeEEEEcCccc--c--cCcCCCCcEEEEeCCHHHHHHHHHHh-c---cccceEEEeCCCCcccccchhhhc----ccH
Q psy13086         17 KKVEFVDVGCGKL--Y--LPMFPSTLILGLEIRVKVSDYVIDEW-S---LYLKKMFFLYPDPHFKRCKYKWRI----INQ   84 (169)
Q Consensus        17 ~~~~iLDiGCG~G--l--a~~~p~~~v~GiDis~~~l~~a~~~~-~---~~~d~v~~~f~d~~f~~~h~~~~~----~~~   84 (169)
                      ++.+|||+|||.|  |  .+...++...|||+++..+..|.+|- +   +.+|.-.-.|+|.+||-.-....+    -..
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~   92 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPD   92 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHH
Confidence            4799999999999  2  23346789999999999888887652 1   334433336889888853221111    025


Q ss_pred             HHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCcccccc-CCCCCCCCCCCCHHHHHHHHcCCCeEEEEE
Q psy13086         85 NLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKR-TDPVVDKLYQSTEEGQKVTRNKGEKFCAVF  163 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~  163 (169)
                      .+|+|+.|+   |...+++.++-.+...-.. +...+.+.....-+..| +.| ....-+..+||......|..|-+-++
T Consensus        93 ~vL~EmlRV---gr~~IVsFPNFg~W~~R~~-l~~~GrmPvt~~lPy~WYdTP-Nih~~Ti~DFe~lc~~~~i~I~~~~~  167 (193)
T PF07021_consen   93 EVLEEMLRV---GRRAIVSFPNFGHWRNRLQ-LLLRGRMPVTKALPYEWYDTP-NIHLCTIKDFEDLCRELGIRIEERVF  167 (193)
T ss_pred             HHHHHHHHh---cCeEEEEecChHHHHHHHH-HHhcCCCCCCCCCCCcccCCC-CcccccHHHHHHHHHHCCCEEEEEEE
Confidence            677777555   6677777766666553333 33233222221112223 333 23567788999999999999965554


Q ss_pred             E
Q psy13086        164 R  164 (169)
Q Consensus       164 ~  164 (169)
                      -
T Consensus       168 ~  168 (193)
T PF07021_consen  168 L  168 (193)
T ss_pred             E
Confidence            3

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.13  E-value=5.4e-11  Score=97.04  Aligned_cols=86  Identities=19%  Similarity=0.211  Sum_probs=55.4

Q ss_pred             CCeEEEEcCccc---------ccCcCC-----CCcEEEEeCCHHHHHHHHHHhc--------------------------
Q psy13086         18 KVEFVDVGCGKL---------YLPMFP-----STLILGLEIRVKVSDYVIDEWS--------------------------   57 (169)
Q Consensus        18 ~~~iLDiGCG~G---------la~~~p-----~~~v~GiDis~~~l~~a~~~~~--------------------------   57 (169)
                      ..+|||+|||||         +++..+     +.+|+|+|+|+.|++.|++.+-                          
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v  179 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV  179 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence            468999999999         223333     4689999999999999986431                          


Q ss_pred             ----------cccceEEEeCCCCcccccchhh------hcccHHHHHHHHHhccCCcEEEEE
Q psy13086         58 ----------LYLKKMFFLYPDPHFKRCKYKW------RIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        58 ----------~~~d~v~~~f~d~~f~~~h~~~------~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                                ...|.....+++..||......      .-....++++++++|+|||.|++.
T Consensus       180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence                      0001111112233455322111      111247999999999999999985

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG1541|consensus

Probab=99.13  E-value=2.4e-10  Score=90.41  Aligned_cols=84  Identities=14%  Similarity=0.181  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCcccccC---cCCCCcEEEEeCCHHHHHHHHHH-hc----------------cccceEEEe-------CCC
Q psy13086         17 KKVEFVDVGCGKLYLP---MFPSTLILGLEIRVKVSDYVIDE-WS----------------LYLKKMFFL-------YPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~Gla~---~~p~~~v~GiDis~~~l~~a~~~-~~----------------~~~d~v~~~-------f~d   69 (169)
                      +...|||||||+||+.   .-++..++|+|||+.|++.|.++ +.                ++||.+...       ..|
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~  129 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNAD  129 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccC
Confidence            4688999999999433   23567999999999999999853 22                566655422       222


Q ss_pred             CcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ++..  +-++|+  ..|+..++.+|++|++.+++.
T Consensus       130 ~s~~--~P~~Rl--~~FF~tLy~~l~rg~raV~Qf  160 (270)
T KOG1541|consen  130 KSLH--VPKKRL--LRFFGTLYSCLKRGARAVLQF  160 (270)
T ss_pred             cccc--ChHHHH--HHHhhhhhhhhccCceeEEEe
Confidence            2211  112332  578999999999999999985

>KOG2361|consensus

Probab=99.12  E-value=1.1e-10  Score=93.36  Aligned_cols=77  Identities=16%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             eEEEEcCccc-----ccCcCCC--CcEEEEeCCHHHHHHHHHHhc------------------------cccceEEEeCC
Q psy13086         20 EFVDVGCGKL-----YLPMFPS--TLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFFLYP   68 (169)
Q Consensus        20 ~iLDiGCG~G-----la~~~p~--~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~~f~   68 (169)
                      +|||||||.|     +.+.+|+  ..+.++|.|+.+++..+++..                        +++|.+.+.|-
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv  153 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV  153 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence            7999999999     5555555  899999999999999876422                        67777766552


Q ss_pred             --CCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         69 --DPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        69 --d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        .-.++.        ...++++++++|||||.+++.+
T Consensus       154 LSAi~pek--------~~~a~~nl~~llKPGG~llfrD  183 (264)
T KOG2361|consen  154 LSAIHPEK--------MQSVIKNLRTLLKPGGSLLFRD  183 (264)
T ss_pred             EeccChHH--------HHHHHHHHHHHhCCCcEEEEee
Confidence              111111        3679999999999999999953

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.12  E-value=6.4e-10  Score=90.16  Aligned_cols=103  Identities=10%  Similarity=0.097  Sum_probs=66.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~f   72 (169)
                      ..+|||+|||+|     ++...|..+++|+|+|+.+++.|++++.                    +++|.|..+.|  +.
T Consensus       109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npP--y~  186 (275)
T PRK09328        109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPP--YI  186 (275)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCC--cC
Confidence            578999999999     6677788999999999999999987643                    13444433211  11


Q ss_pred             ccc--c----hhh------hc--------ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCce
Q psy13086         73 KRC--K----YKW------RI--------INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFV  124 (169)
Q Consensus        73 ~~~--h----~~~------~~--------~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~  124 (169)
                      ...  +    ..+      .+        ....+++++.++|+|||.+++...... ...+...+... +|.
T Consensus       187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~-~~~~~~~l~~~-gf~  256 (275)
T PRK09328        187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQ-GEAVRALLAAA-GFA  256 (275)
T ss_pred             CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchH-HHHHHHHHHhC-CCc
Confidence            000  0    000      00        125688899999999999999764432 33355555543 344

>PRK04457 spermidine synthase; Provisional

Probab=99.11  E-value=3.5e-10  Score=92.17  Aligned_cols=82  Identities=16%  Similarity=0.128  Sum_probs=60.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPD   69 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d   69 (169)
                      ..+|||||||+|     ++..+|+.++++||+++.+++.|++++.                       .++|.|.+...+
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~  146 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFD  146 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCC
Confidence            568999999999     5567899999999999999999987542                       245555543211


Q ss_pred             CcccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .    ......+...++++++.++|+|||.+++.
T Consensus       147 ~----~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        147 G----EGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             C----CCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            1    11111223478999999999999999984

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.11  E-value=2.9e-10  Score=94.11  Aligned_cols=87  Identities=16%  Similarity=0.127  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEE---EeC-CC--Cccccc------ch
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMF---FLY-PD--PHFKRC------KY   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~---~~f-~d--~~f~~~------h~   77 (169)
                      +..+|||||||+|     +++++|+.+++++|. +.+++.|++++.  +--+.+.   ..+ .+  |.++..      |.
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~  227 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYS  227 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhc
Confidence            3579999999999     778899999999997 789999988765  1112222   111 11  222321      11


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ...-....++++++++|||||++++..
T Consensus       228 ~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       228 ANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             CChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            100012468999999999999999874

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.10  E-value=4.6e-10  Score=92.83  Aligned_cols=81  Identities=14%  Similarity=0.110  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEe
Q psy13086         17 KKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFL   66 (169)
Q Consensus        17 ~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~   66 (169)
                      .+.+|+|||||.|       ++..+|+.+++|+|+++.+++.|++.+.                       +.+|.|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            3688999999977       4456899999999999999999987652                       122222221


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       .      .|....-...++++.+++.|+|||.+++.+
T Consensus       203 -A------Li~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        203 -A------LVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             -c------ccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence             1      111100013679999999999999999986

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.10  E-value=3.1e-10  Score=89.61  Aligned_cols=86  Identities=12%  Similarity=0.172  Sum_probs=56.2

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe--------CCCCcccccchhhhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL--------YPDPHFKRCKYKWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~--------f~d~~f~~~h~~~~~   81 (169)
                      ++.+|||||||+|     ++... ++.+|+|+|+++.|++.|++++. ..++.+.+.        .++..||.....-  
T Consensus        76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~--  153 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA--  153 (212)
T ss_pred             CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC--
Confidence            4689999999999     44443 45799999999999999998875 122222221        1122344321110  


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ......+.+.+.|||||++++..
T Consensus       154 ~~~~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        154 AGPDIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CcccchHHHHHhhCCCcEEEEEE
Confidence            01345567888999999998853

>PRK14967 putative methyltransferase; Provisional

Probab=99.09  E-value=7.1e-10  Score=87.94  Aligned_cols=85  Identities=11%  Similarity=0.021  Sum_probs=55.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCCCCccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~d~~f~   73 (169)
                      +.+|||+|||+|     ++.. +..+++|+|+|+.|++.|++++.                   .++|.|.+.-  |+..
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~np--Py~~  113 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNP--PYVP  113 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECC--CCCC
Confidence            578999999999     3333 33589999999999999887643                   2344444321  1110


Q ss_pred             ccc---------h------hhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         74 RCK---------Y------KWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        74 ~~h---------~------~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      ...         .      ........+++++.++|||||++++...
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~  160 (223)
T PRK14967        114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS  160 (223)
T ss_pred             CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            000         0      0000135688999999999999998643

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.08  E-value=1.6e-09  Score=85.24  Aligned_cols=133  Identities=12%  Similarity=0.083  Sum_probs=76.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc---cceEEE-----eCC-CCccccc------c
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY---LKKMFF-----LYP-DPHFKRC------K   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~---~d~v~~-----~f~-d~~f~~~------h   76 (169)
                      +.+|||||||+|     ++..  ...++|+|+|+.|++.+++++. ..   +..+..     ... +..||..      +
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~  123 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE  123 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence            678999999999     3333  3469999999999999988754 11   111111     111 1223321      1


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCC
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKG  156 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~  156 (169)
                      +..  ....+++++.++|+|||.+++.+.......+....+..+..+...+.....    . .......+.++.....|.
T Consensus       124 ~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~l~~~l~~~G~  196 (224)
T TIGR01983       124 HVP--DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHD----W-EKFIKPSELTSWLESAGL  196 (224)
T ss_pred             hCC--CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCC----h-hhcCCHHHHHHHHHHcCC
Confidence            111  135789999999999999998765444333333322222222222211111    0 122345567788888888


Q ss_pred             CeE
Q psy13086        157 EKF  159 (169)
Q Consensus       157 ~i~  159 (169)
                      .+-
T Consensus       197 ~i~  199 (224)
T TIGR01983       197 RVK  199 (224)
T ss_pred             eee
Confidence            873

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK00811 spermidine synthase; Provisional

Probab=99.08  E-value=8.9e-10  Score=90.71  Aligned_cols=84  Identities=15%  Similarity=0.103  Sum_probs=62.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~   65 (169)
                      ..+||+||||+|     +.+..+..+|++||+++.|++.|++.++                           +++|.|.+
T Consensus        77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  156 (283)
T PRK00811         77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV  156 (283)
T ss_pred             CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence            578999999999     3333344689999999999999986431                           35777766


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      ..++|+...    ..+...++++.++++|+|||.+++...
T Consensus       157 D~~dp~~~~----~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        157 DSTDPVGPA----EGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             CCCCCCCch----hhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            655654211    122346899999999999999998753

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.08  E-value=6e-10  Score=87.82  Aligned_cols=85  Identities=16%  Similarity=0.210  Sum_probs=57.7

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-----cccceEE-----EeCCCCccccc------
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-----LYLKKMF-----FLYPDPHFKRC------   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~-----~~f~d~~f~~~------   75 (169)
                      +.+|||||||+|     ++...| ..+++|+|+++.+++.|++++.     ..+..+.     ..+++..++..      
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l  131 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL  131 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence            578999999999     555555 6899999999999999988753     1111111     11222233321      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |+..  ....+++++.++|+|||.+++.+
T Consensus       132 ~~~~--~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        132 RNVP--DIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             ccCC--CHHHHHHHHHHhccCCcEEEEEE
Confidence            1111  13678999999999999998764

>PRK14968 putative methyltransferase; Provisional

Probab=99.08  E-value=1.1e-09  Score=83.50  Aligned_cols=101  Identities=15%  Similarity=0.142  Sum_probs=60.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~   70 (169)
                      +.+|||+|||+|     ++..  +.+++|+|+|+.|++.+++++.                      ..+|.|....|--
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL  101 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence            578999999999     4444  5799999999999999987653                      1233333211100


Q ss_pred             c--cccc-----chh------hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcC
Q psy13086         71 H--FKRC-----KYK------WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEH  120 (169)
Q Consensus        71 ~--f~~~-----h~~------~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~  120 (169)
                      .  .+..     +..      .......+++++.++|||||.+++..........+...+.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~  164 (188)
T PRK14968        102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKL  164 (188)
T ss_pred             CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHC
Confidence            0  0000     000      011135689999999999999988753322223344444444

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.07  E-value=1.3e-09  Score=88.34  Aligned_cols=101  Identities=12%  Similarity=0.096  Sum_probs=66.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~f   72 (169)
                      ..+|||+|||+|     ++...|..+++|+|+|+.|++.|++|+.                    ..+|.|..+-  |+.
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NP--Py~  164 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANA--PYV  164 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECC--CCC
Confidence            358999999999     5566788899999999999999998753                    1233333221  111


Q ss_pred             cc-----------cch-hhhc--------ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         73 KR-----------CKY-KWRI--------INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        73 ~~-----------~h~-~~~~--------~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      ..           .|. ...+        +...+++.+.++|||||.+++....... ..+...+..+.
T Consensus       165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~-~~v~~~l~~~g  232 (251)
T TIGR03704       165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQA-PLAVEAFARAG  232 (251)
T ss_pred             CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHHHHHHHCC
Confidence            10           010 0001        1257888899999999999998765543 33556666554

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK06202 hypothetical protein; Provisional

Probab=99.07  E-value=5.5e-10  Score=88.91  Aligned_cols=85  Identities=11%  Similarity=0.022  Sum_probs=52.7

Q ss_pred             CCeEEEEcCccc-----ccC----cCCCCcEEEEeCCHHHHHHHHHHhc-cccce-----EEEeCCCCcccc------cc
Q psy13086         18 KVEFVDVGCGKL-----YLP----MFPSTLILGLEIRVKVSDYVIDEWS-LYLKK-----MFFLYPDPHFKR------CK   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~----~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~-----v~~~f~d~~f~~------~h   76 (169)
                      ..+|||||||+|     ++.    ..++.+++|+|+|+.|++.|+++.. ..+..     -.+.+++..||.      .|
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh  140 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH  140 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence            578999999999     333    2356799999999999999987643 11111     011223334442      23


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |...-....++++++|+++  |.+++..
T Consensus       141 h~~d~~~~~~l~~~~r~~~--~~~~i~d  166 (232)
T PRK06202        141 HLDDAEVVRLLADSAALAR--RLVLHND  166 (232)
T ss_pred             cCChHHHHHHHHHHHHhcC--eeEEEec
Confidence            2221112469999999998  4554543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.06  E-value=8.7e-10  Score=86.04  Aligned_cols=85  Identities=19%  Similarity=0.267  Sum_probs=57.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhc--cccceE-----EEeCCCCccccc------chh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWS--LYLKKM-----FFLYPDPHFKRC------KYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~--~~~d~v-----~~~f~d~~f~~~------h~~   78 (169)
                      +.+|||+|||+|     +++..|. .+++|+|+++.+++.++++..  ..+..+     .+.+++..++..      |+.
T Consensus        40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~  119 (223)
T TIGR01934        40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV  119 (223)
T ss_pred             CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc
Confidence            679999999999     5556665 799999999999999987653  111111     111222223321      111


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .  ....+++++.++|+|||.+++.+
T Consensus       120 ~--~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       120 T--DIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             c--cHHHHHHHHHHHcCCCcEEEEEE
Confidence            1  12579999999999999999864

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.06  E-value=1.3e-09  Score=90.82  Aligned_cols=103  Identities=12%  Similarity=0.089  Sum_probs=66.1

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCcc
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~f   72 (169)
                      .+|||+|||+|     ++..+|+.+++|+|+|+.+++.|++++.                     .++|.|..+  .|..
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN--PPyi  212 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN--PPYV  212 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC--CCCC
Confidence            58999999999     6667888999999999999999988754                     123333221  1111


Q ss_pred             cc---------cchhhh----------cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086         73 KR---------CKYKWR----------IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        73 ~~---------~h~~~~----------~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      ..         .++...          -....+++++.++|+|||.+++.....  ...+.+.+..+ .|.+.
T Consensus       213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~--~~~~~~~~~~~-~~~~~  282 (307)
T PRK11805        213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS--RVHLEEAYPDV-PFTWL  282 (307)
T ss_pred             CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHHHHHHhhC-CCEEE
Confidence            00         000000          012568999999999999999976543  22355555443 34443

>KOG3010|consensus

Probab=99.05  E-value=1.7e-10  Score=92.17  Aligned_cols=74  Identities=12%  Similarity=0.089  Sum_probs=53.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~   70 (169)
                      ...++|||||+|     +|..+  .+|+|+|+|+.||+.|++.-+                      +++|.|..-=.-.
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H  111 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH  111 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence            348999999999     44443  489999999999999986321                      5566554322223


Q ss_pred             cccccchhhhcccHHHHHHHHHhccCCc-EEEE
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAYVLSEGG-IVYT  102 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG-~l~i  102 (169)
                      ||+         .+.+.+++.|+||+.| .+.+
T Consensus       112 WFd---------le~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  112 WFD---------LERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             hhc---------hHHHHHHHHHHcCCCCCEEEE
Confidence            444         3789999999999988 4443

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.04  E-value=2.2e-09  Score=93.05  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d   69 (169)
                      ++.+|||+|||+|     ++...++..++|+|+|+.|++.+++++.                      .++|.|.+.-|-
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc  323 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC  323 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence            4678999999999     5556666799999999999999987754                      123444332110


Q ss_pred             Ccccc------cchhh---h-----cccHHHHHHHHHhccCCcEEEEEeC--ChHHH-HHHHHHHhcCCCceec
Q psy13086         70 PHFKR------CKYKW---R-----IINQNLLSEYAYVLSEGGIVYTITD--VKDLH-DWIVSHFTEHPLFVEC  126 (169)
Q Consensus        70 ~~f~~------~h~~~---~-----~~~~~~l~~~~rvLkpGG~l~i~~d--~~~~~-~~~~~~~~~~~~f~~~  126 (169)
                      .....      .++.+   .     -...++++.+.++|||||.++++|-  .+... ......+..|+.|+..
T Consensus       324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~  397 (427)
T PRK10901        324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELL  397 (427)
T ss_pred             CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEe
Confidence            00000      00000   0     0134799999999999999998762  11111 2233445567777654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.03  E-value=2.1e-09  Score=88.38  Aligned_cols=86  Identities=12%  Similarity=0.174  Sum_probs=59.2

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCcc
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~f   72 (169)
                      .+|||+|||+|     ++...|+.+++|+|+|+.+++.|++++.                     ..+|.|..+-  |+.
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNP--Pyi  193 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNP--PYI  193 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECC--CCC
Confidence            58999999999     6677788999999999999999988653                     1244333221  111


Q ss_pred             cc---------cchhhh--c--------ccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         73 KR---------CKYKWR--I--------INQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        73 ~~---------~h~~~~--~--------~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ..         .++...  +        ....+++++.++|+|||.+++....
T Consensus       194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~  246 (284)
T TIGR00536       194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN  246 (284)
T ss_pred             CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence            10         011000  0        1356899999999999999987654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1.3e-09  Score=90.10  Aligned_cols=110  Identities=14%  Similarity=0.129  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccce---EEEeCCCC-----cccccchh-hh
Q psy13086         15 CEKKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKK---MFFLYPDP-----HFKRCKYK-WR   80 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~---v~~~f~d~-----~f~~~h~~-~~   80 (169)
                      ..++.++||+|||+|    .|.......++|+|+++.+++.|++|+. +.++.   +....++.     .||..-+. -.
T Consensus       160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA  239 (300)
T COG2264         160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA  239 (300)
T ss_pred             hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence            346789999999999    3334555679999999999999999876 44442   11111111     22211000 00


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                      -+...+..++.+.|||||.++++--..+..+...+.+..+ +|..
T Consensus       240 ~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~-gf~v  283 (300)
T COG2264         240 EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQA-GFEV  283 (300)
T ss_pred             HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhC-CCeE
Confidence            0135788999999999999999877777766555555433 3444

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.03  E-value=1.9e-09  Score=83.22  Aligned_cols=91  Identities=8%  Similarity=-0.039  Sum_probs=54.3

Q ss_pred             CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHH----H-------------HHHHHhc-cccceEEEeCCCC-
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVS----D-------------YVIDEWS-LYLKKMFFLYPDP-   70 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l----~-------------~a~~~~~-~~~d~v~~~f~d~-   70 (169)
                      .++.+|||||||+|     ++..+ +..+++|+|+|+.+-    .             ..++... ..+|.|....+.+ 
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~  110 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNI  110 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCC
Confidence            34789999999999     44444 567899999998540    0             0001111 3466665433211 


Q ss_pred             --cccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         71 --HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        71 --~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                        .+...|.........+++++.++|+|||++++....
T Consensus       111 ~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438       111 SGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence              011111111001257899999999999999996543

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.02  E-value=2.4e-09  Score=92.23  Aligned_cols=101  Identities=12%  Similarity=0.072  Sum_probs=64.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPH   71 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~   71 (169)
                      +.+|||||||+|     ++...|+.+++|+|+|+.|++.|++|+.                     .++|.|..+-  |.
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNP--PY  329 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNP--PY  329 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECC--CC
Confidence            568999999999     5666788999999999999999998753                     1133333211  11


Q ss_pred             cccc--c-------hh--hhc--------ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         72 FKRC--K-------YK--WRI--------INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        72 f~~~--h-------~~--~~~--------~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      ....  +       +.  ..+        +...+++++.+.|+|||.+++..... ..+...+.+..++
T Consensus       330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~-Q~e~V~~ll~~~G  397 (423)
T PRK14966        330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD-QGAAVRGVLAENG  397 (423)
T ss_pred             CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc-HHHHHHHHHHHCC
Confidence            1100  0       00  000        12468888889999999998876443 2333455555543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.02  E-value=2.5e-09  Score=92.60  Aligned_cols=109  Identities=21%  Similarity=0.287  Sum_probs=66.9

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc-eEE--------EeC--CCCccccc----
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK-KMF--------FLY--PDPHFKRC----   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~--------~~f--~d~~f~~~----   75 (169)
                      ++.+|||+|||+|     ++...++..++|+|+|+.+++.+++++. ..++ .+.        ..+  ++..||..    
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa  317 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA  317 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence            4689999999999     5555667799999999999999988765 1111 010        000  11122211    


Q ss_pred             --------ch----hhh--------c--ccHHHHHHHHHhccCCcEEEEEeC--ChHHHHH-HHHHHhcCCCcee
Q psy13086         76 --------KY----KWR--------I--INQNLLSEYAYVLSEGGIVYTITD--VKDLHDW-IVSHFTEHPLFVE  125 (169)
Q Consensus        76 --------h~----~~~--------~--~~~~~l~~~~rvLkpGG~l~i~~d--~~~~~~~-~~~~~~~~~~f~~  125 (169)
                              +.    +++        +  .+.++|++++++|||||+++.+|-  .+..-+. ....+..||.|..
T Consensus       318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~  392 (426)
T TIGR00563       318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFPF  392 (426)
T ss_pred             CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCee
Confidence                    00    000        0  135799999999999999998752  2222222 2234456777754

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.02  E-value=2.8e-09  Score=92.54  Aligned_cols=110  Identities=15%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYP   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~   68 (169)
                      ++.+|||+|||+|     ++... ++.+|+++|+|+.+++.+++++.                      +++|.|.+.-|
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP  316 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP  316 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence            4678999999999     45443 46799999999999999987754                      22444443211


Q ss_pred             CCccccc--c--hhhh--------c--ccHHHHHHHHHhccCCcEEEEEeC--ChHHHHHHH-HHHhcCCCceec
Q psy13086         69 DPHFKRC--K--YKWR--------I--INQNLLSEYAYVLSEGGIVYTITD--VKDLHDWIV-SHFTEHPLFVEC  126 (169)
Q Consensus        69 d~~f~~~--h--~~~~--------~--~~~~~l~~~~rvLkpGG~l~i~~d--~~~~~~~~~-~~~~~~~~f~~~  126 (169)
                      --.+...  +  .+++        +  .+.++|.++.+.|||||.++.+|=  .+...+... ..+..||.|...
T Consensus       317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~  391 (431)
T PRK14903        317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVI  391 (431)
T ss_pred             CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEe
Confidence            1101000  0  0000        0  235689999999999999998862  222233333 344568888754

>PRK01581 speE spermidine synthase; Validated

Probab=99.02  E-value=2.3e-09  Score=90.87  Aligned_cols=88  Identities=13%  Similarity=0.136  Sum_probs=66.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH---------------hc--------------cccceE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE---------------WS--------------LYLKKM   63 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~---------------~~--------------~~~d~v   63 (169)
                      ..+||+||||+|     +.+..+..++++||+++.|++.|++.               +.              ..+|.|
T Consensus       151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI  230 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI  230 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence            578999999999     33333457999999999999999851               10              468888


Q ss_pred             EEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086         64 FFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKD  108 (169)
Q Consensus        64 ~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~  108 (169)
                      .+.++||.-.   ....+...++++.+++.|+|||.+++.+..+.
T Consensus       231 IvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~  272 (374)
T PRK01581        231 IIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVCQSNSPA  272 (374)
T ss_pred             EEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEEecCChh
Confidence            8888776421   11234457899999999999999988865544

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.01  E-value=3.7e-09  Score=83.88  Aligned_cols=85  Identities=15%  Similarity=0.120  Sum_probs=55.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---cccceEEEe------CCCCccccc------ch
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---LYLKKMFFL------YPDPHFKRC------KY   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---~~~d~v~~~------f~d~~f~~~------h~   77 (169)
                      +.+|||||||+|     +++.  ..+++|+|+++.+++.|++++.   ..++.+...      ..+..||..      ++
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~  126 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH  126 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence            578999999999     3332  4689999999999999987654   111111100      011223321      11


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ..  ....+++.+.++|+|||.+++.+..
T Consensus       127 ~~--~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        127 VP--DPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             cC--CHHHHHHHHHHHcCCCcEEEEEecC
Confidence            11  1257899999999999999987643

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=3.8e-09  Score=85.13  Aligned_cols=93  Identities=20%  Similarity=0.288  Sum_probs=78.3

Q ss_pred             CCCCCeEEEEcCccc-----ccC-cCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeC
Q psy13086         15 CEKKVEFVDVGCGKL-----YLP-MFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLY   67 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~-~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f   67 (169)
                      +.++.+|||.|.|+|     ||. ..|..+|+..|+.+..++.|++|++                     ..+|++++.-
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDm  171 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDL  171 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcC
Confidence            456899999999999     553 4577899999999999999998865                     5788889999


Q ss_pred             CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcC
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEH  120 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~  120 (169)
                      |+||             .+++.+..+|||||.+.+-++.-+-.+...+.++++
T Consensus       172 p~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~  211 (256)
T COG2519         172 PDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER  211 (256)
T ss_pred             CChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence            9997             689999999999999999887766666666677766

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.00  E-value=5.7e-10  Score=92.43  Aligned_cols=108  Identities=13%  Similarity=0.175  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc-eEEEeCC----CCcccccchh-hhcccHH
Q psy13086         17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK-KMFFLYP----DPHFKRCKYK-WRIINQN   85 (169)
Q Consensus        17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~~f~----d~~f~~~h~~-~~~~~~~   85 (169)
                      ++.+|||||||||    .|.......|+|+|+++.+++.|++|+. +.++ .+.+...    ...|+..-.. ..-+...
T Consensus       161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~~~vL~~  240 (295)
T PF06325_consen  161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANILADVLLE  240 (295)
T ss_dssp             TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES-HHHHHH
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECCCHHHHHH
Confidence            4679999999999    4445555689999999999999999876 2222 2222211    1122211000 0001246


Q ss_pred             HHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086         86 LLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        86 ~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      ++..+.++|+|||.|+++--.......+.+.+. . +|...
T Consensus       241 l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~-~-g~~~~  279 (295)
T PF06325_consen  241 LAPDIASLLKPGGYLILSGILEEQEDEVIEAYK-Q-GFELV  279 (295)
T ss_dssp             HHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHH-T-TEEEE
T ss_pred             HHHHHHHhhCCCCEEEEccccHHHHHHHHHHHH-C-CCEEE
Confidence            788889999999999998655555565666664 3 67654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.99  E-value=5.2e-09  Score=82.49  Aligned_cols=132  Identities=12%  Similarity=0.029  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeC-----CCCccccc------chh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLY-----PDPHFKRC------KYK   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f-----~d~~f~~~------h~~   78 (169)
                      +..+|||||||+|     ++..  ...++|+|+|+.|++.|++++. ... +.+.+..     .+..||..      ++.
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~  132 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY  132 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence            3688999999999     4333  4689999999999999998765 111 1121111     11334421      111


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEK  158 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i  158 (169)
                      ..-....+++++++++++++.+.+..... +.. ....+...  |....       .+......+.++++......|..+
T Consensus       133 ~~~~~~~~l~~i~~~~~~~~~i~~~~~~~-~~~-~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~l~~~Gf~v  201 (219)
T TIGR02021       133 PASDMAKALGHLASLTKERVIFTFAPKTA-WLA-FLKMIGEL--FPGSS-------RATSAYLHPMTDLERALGELGWKI  201 (219)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCCch-HHH-HHHHHHhh--CcCcc-------cccceEEecHHHHHHHHHHcCcee
Confidence            10012568999999999877766543221 111 11111111  11100       011113356778888888889877


Q ss_pred             EEE
Q psy13086        159 FCA  161 (169)
Q Consensus       159 ~~~  161 (169)
                      ...
T Consensus       202 ~~~  204 (219)
T TIGR02021       202 VRE  204 (219)
T ss_pred             eee
Confidence            544

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.99  E-value=8.3e-09  Score=79.84  Aligned_cols=108  Identities=12%  Similarity=0.047  Sum_probs=72.9

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe-------CCC-Ccccccchhhhc
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL-------YPD-PHFKRCKYKWRI   81 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~-------f~d-~~f~~~h~~~~~   81 (169)
                      .++.+++|||||||     ++...|..++++||-++++++..++|.. -.++.+.+.       .++ |.||..=---.-
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg~  112 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGG  112 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCCC
Confidence            45789999999999     6666899999999999999999988876 225555432       111 123321000000


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCc
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLF  123 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f  123 (169)
                      -.+.+++.+...|||||+++...-..+-.....+.+.+.+.+
T Consensus       113 ~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~  154 (187)
T COG2242         113 NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR  154 (187)
T ss_pred             CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence            137899999999999999998654444444455666666654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.98  E-value=1.2e-09  Score=95.34  Aligned_cols=84  Identities=13%  Similarity=0.046  Sum_probs=55.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--ccc-----ce--EEEeCCCCccccc------ch
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYL-----KK--MFFLYPDPHFKRC------KY   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~-----d~--v~~~f~d~~f~~~------h~   77 (169)
                      +.+|||||||+|     ++..  ..+++|+|+|+.|++.+++...  ..+     |.  ..+.+++..||..      |+
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~  115 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY  115 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence            568999999999     4444  3589999999999998765321  111     11  1123444455532      21


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ...-....++++++|+|||||.+++.
T Consensus       116 l~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        116 LSDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            11101257999999999999999885

>PHA03411 putative methyltransferase; Provisional

Probab=98.98  E-value=2.3e-09  Score=87.81  Aligned_cols=90  Identities=9%  Similarity=0.039  Sum_probs=60.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------cccceEEEeCCCCcc---cc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------LYLKKMFFLYPDPHF---KR   74 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------~~~d~v~~~f~d~~f---~~   74 (169)
                      ..+|||+|||+|     ++.+.+..+++|+|+|+.|++.|+++.+               ..+|.|..+-|-...   +.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~  144 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT  144 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence            468999999999     3445556799999999999999988643               346666542221111   10


Q ss_pred             cch-hh-------hc-ccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         75 CKY-KW-------RI-INQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        75 ~h~-~~-------~~-~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                      ..+ ..       .. ...++++.+.++|+|+|.++++-+..
T Consensus       145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~  186 (279)
T PHA03411        145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR  186 (279)
T ss_pred             hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence            100 00       11 13689999999999999998875543

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.98  E-value=2.1e-09  Score=90.10  Aligned_cols=87  Identities=16%  Similarity=0.168  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCcc
Q psy13086         17 KKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        17 ~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~f   72 (169)
                      ++.+|||+|||||   +........++|+|+++.|++.|++|+.                     .++|.|..   ||-+
T Consensus       182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~---dPPy  258 (329)
T TIGR01177       182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT---DPPY  258 (329)
T ss_pred             CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE---CCCC
Confidence            3578999999999   2223346799999999999999988764                     12222222   1111


Q ss_pred             cccchh----hhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         73 KRCKYK----WRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        73 ~~~h~~----~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ......    ..-....++++++++|||||.+++..+.
T Consensus       259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~  296 (329)
T TIGR01177       259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT  296 (329)
T ss_pred             cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence            110000    0011367999999999999999887644

This family is found exclusively in the Archaea.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.98  E-value=5.4e-09  Score=90.96  Aligned_cols=111  Identities=18%  Similarity=0.211  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYP   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~   68 (169)
                      ++.+|||+|||+|     ++... +...++|+|+++.+++.+++++.                      +++|.|.+.-|
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P  329 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP  329 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence            3578999999999     55544 56799999999999999988754                      12333333211


Q ss_pred             CCcccc-cc-----hh---hh---c--ccHHHHHHHHHhccCCcEEEEEeCC--h-HHHHHHHHHHhcCCCceecC
Q psy13086         69 DPHFKR-CK-----YK---WR---I--INQNLLSEYAYVLSEGGIVYTITDV--K-DLHDWIVSHFTEHPLFVECD  127 (169)
Q Consensus        69 d~~f~~-~h-----~~---~~---~--~~~~~l~~~~rvLkpGG~l~i~~d~--~-~~~~~~~~~~~~~~~f~~~~  127 (169)
                      -..... .+     +.   ..   +  .+..+++++.++|||||.++.+|-.  + +-.......+..++.|+..+
T Consensus       330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~  405 (444)
T PRK14902        330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVP  405 (444)
T ss_pred             CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEec
Confidence            000000 00     00   00   0  1346899999999999999976522  2 22222334455677777653

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=5.9e-09  Score=85.83  Aligned_cols=103  Identities=13%  Similarity=0.186  Sum_probs=68.7

Q ss_pred             eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCCCCccccc
Q psy13086         20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYPDPHFKRC   75 (169)
Q Consensus        20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~d~~f~~~   75 (169)
                      +|||||||+|     ++...|+++|+|+|+|+.+++.|++|+.                   +.+|.|..  -.|+-...
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVs--NPPYip~~  190 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVS--NPPYIPAE  190 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEe--CCCCCCCc
Confidence            6999999999     7788899999999999999999998765                   22333322  12221111


Q ss_pred             --chhh---------hc--------ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         76 --KYKW---------RI--------INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        76 --h~~~---------~~--------~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                        +...         .+        +...++.++.+.|+|||.+++...... .+...+.+...+.|..
T Consensus       191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q-~~~v~~~~~~~~~~~~  258 (280)
T COG2890         191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ-GEAVKALFEDTGFFEI  258 (280)
T ss_pred             ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc-HHHHHHHHHhcCCceE
Confidence              0000         00        236799999999999999999764332 3335556666553443

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.97  E-value=1.4e-09  Score=91.53  Aligned_cols=93  Identities=17%  Similarity=0.271  Sum_probs=55.8

Q ss_pred             CCeEEEEcCccc--ccCc--CCCCcEEEEeCCHHHHHHHHHHhc------------cccceEEE-----------eCCCC
Q psy13086         18 KVEFVDVGCGKL--YLPM--FPSTLILGLEIRVKVSDYVIDEWS------------LYLKKMFF-----------LYPDP   70 (169)
Q Consensus        18 ~~~iLDiGCG~G--la~~--~p~~~v~GiDis~~~l~~a~~~~~------------~~~d~v~~-----------~f~d~   70 (169)
                      +.+|||+|||.|  |.+-  ..-..++|+|||...|+.|++|..            ..+.+.++           .++++
T Consensus        63 ~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~  142 (331)
T PF03291_consen   63 GLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPR  142 (331)
T ss_dssp             T-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSST
T ss_pred             CCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcccc
Confidence            689999999988  3321  123589999999999999998872            01222211           12222


Q ss_pred             --cccc------cchhhhc--ccHHHHHHHHHhccCCcEEEEEeCChHHH
Q psy13086         71 --HFKR------CKYKWRI--INQNLLSEYAYVLSEGGIVYTITDVKDLH  110 (169)
Q Consensus        71 --~f~~------~h~~~~~--~~~~~l~~~~rvLkpGG~l~i~~d~~~~~  110 (169)
                        .||.      .|+.-.-  -...+|+.++..|||||.|+.++...+..
T Consensus       143 ~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i  192 (331)
T PF03291_consen  143 SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI  192 (331)
T ss_dssp             TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred             CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence              3332      2321100  12569999999999999999988665443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR00417 speE spermidine synthase

Probab=98.96  E-value=5e-09  Score=85.58  Aligned_cols=85  Identities=14%  Similarity=0.081  Sum_probs=61.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..+||+||||+|     ++...+..+++++|+++++++.|++.++                          ..+|.|.+.
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D  152 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD  152 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence            459999999999     3333345689999999999999987542                          246666555


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      .++|.-.    ...+...++++.++++|+|||.+++.+..
T Consensus       153 ~~~~~~~----~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       153 STDPVGP----AETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             CCCCCCc----ccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            4444211    11233468999999999999999987543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1271|consensus

Probab=98.94  E-value=2.4e-09  Score=82.69  Aligned_cols=122  Identities=19%  Similarity=0.107  Sum_probs=72.8

Q ss_pred             CeEEEEcCccc-----ccC-cCCCCcEEEEeCCHHHHHHHHHHhc-------------------------------cccc
Q psy13086         19 VEFVDVGCGKL-----YLP-MFPSTLILGLEIRVKVSDYVIDEWS-------------------------------LYLK   61 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~-~~p~~~v~GiDis~~~l~~a~~~~~-------------------------------~~~d   61 (169)
                      ++|||+|||+|     |++ .+++ .++|+|.|+++++.|+....                               +.+|
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D  147 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD  147 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence            49999999999     444 3554 59999999999999864222                               2222


Q ss_pred             eEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCC
Q psy13086         62 KMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKL  141 (169)
Q Consensus        62 ~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  141 (169)
                      +|.+. ||.    .. .|.   .-.+..+.+.|+|||+|+|.+=+-. .+.+.+.+... .|+....             
T Consensus       148 AisLs-~d~----~~-~r~---~~Y~d~v~~ll~~~gifvItSCN~T-~dELv~~f~~~-~f~~~~t-------------  203 (227)
T KOG1271|consen  148 AISLS-PDG----PV-GRL---VVYLDSVEKLLSPGGIFVITSCNFT-KDELVEEFENF-NFEYLST-------------  203 (227)
T ss_pred             eeecC-CCC----cc-cce---eeehhhHhhccCCCcEEEEEecCcc-HHHHHHHHhcC-CeEEEEe-------------
Confidence            22221 111    00 011   2367778899999999999762222 23345555533 3444310             


Q ss_pred             CCCCHHHHHHHHcCCCeEEEEEEec
Q psy13086        142 YQSTEEGQKVTRNKGEKFCAVFRRG  166 (169)
Q Consensus       142 ~~~T~ye~~~~~~g~~i~~~~~~r~  166 (169)
                       .+|.-.+....+|-.+..+.|+|+
T Consensus       204 -vp~ptF~FgG~~G~tvt~vaF~~k  227 (227)
T KOG1271|consen  204 -VPTPTFMFGGSVGSTVTSVAFLRK  227 (227)
T ss_pred             -eccceEEeccccccEEEEEEEecC
Confidence             011124455678888888888764

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.94  E-value=6.6e-09  Score=91.91  Aligned_cols=40  Identities=13%  Similarity=0.251  Sum_probs=34.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ..+|||||||+|     ++..+|+.+++|+|+|+.|++.|++++.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~  183 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAI  183 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH
Confidence            468999999999     5567788999999999999999988753

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.94  E-value=3.7e-09  Score=83.00  Aligned_cols=85  Identities=15%  Similarity=0.130  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeC-------C-CCcccccchhhhcc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLY-------P-DPHFKRCKYKWRII   82 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f-------~-d~~f~~~h~~~~~~   82 (169)
                      ++.+|||||||+|     ++...  .+++|+|+++.|++.|++++. ..++.+.+..       + ...||......  .
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~--~  153 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTA--A  153 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEcc--C
Confidence            4679999999999     34443  379999999999999998765 2222222111       1 11233211000  1


Q ss_pred             cHHHHHHHHHhccCCcEEEEEeC
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      ...+.+.+.+.|+|||.+++...
T Consensus       154 ~~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        154 APEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             chhhhHHHHHhcCCCcEEEEEEc
Confidence            23456788899999999998653

>PRK03612 spermidine synthase; Provisional

Probab=98.92  E-value=7.3e-09  Score=91.93  Aligned_cols=84  Identities=11%  Similarity=0.175  Sum_probs=64.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHH---------------hc--------------cccce
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDE---------------WS--------------LYLKK   62 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~---------------~~--------------~~~d~   62 (169)
                      ..+|||||||+|     +++ +|. .++++||++++|++.|+++               +.              .++|.
T Consensus       298 ~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        298 PRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            578999999999     333 455 7999999999999999872               11              46788


Q ss_pred             EEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         63 MFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        63 v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      |.+.+++|+...   ..++...++++.+.++|||||.+++.+.
T Consensus       377 Ii~D~~~~~~~~---~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        377 IIVDLPDPSNPA---LGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             EEEeCCCCCCcc---hhccchHHHHHHHHHhcCCCeEEEEecC
Confidence            888777764211   1233457899999999999999998753

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.92  E-value=4.6e-09  Score=83.23  Aligned_cols=36  Identities=17%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID   54 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~   54 (169)
                      ++.+|||+|||.|     ||.  .+.+|+|||+|+.+++.|.+
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~   74 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFA   74 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHH
Confidence            3579999999999     554  36799999999999998643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.91  E-value=1.5e-08  Score=82.55  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=66.6

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d   69 (169)
                      ++.+|||+|||+|     ++.... ...|+++|+++.+++.+++++.                     ..+|.|.+.-|-
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc  150 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC  150 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence            3678999999999     455443 4589999999999999987754                     224444432110


Q ss_pred             C---cc----cc--cchhhhc-----ccHHHHHHHHHhccCCcEEEEEeC--ChHHHHHHH-HHHhcCCCceec
Q psy13086         70 P---HF----KR--CKYKWRI-----INQNLLSEYAYVLSEGGIVYTITD--VKDLHDWIV-SHFTEHPLFVEC  126 (169)
Q Consensus        70 ~---~f----~~--~h~~~~~-----~~~~~l~~~~rvLkpGG~l~i~~d--~~~~~~~~~-~~~~~~~~f~~~  126 (169)
                      .   ..    +.  ......+     .+.++|+.+.+.|||||+++.+|-  .+..-+... ..+..++.|...
T Consensus       151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~  224 (264)
T TIGR00446       151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEE  224 (264)
T ss_pred             CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEe
Confidence            0   00    00  0000011     135699999999999999988852  222222233 333456766543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.91  E-value=1.5e-08  Score=88.20  Aligned_cols=110  Identities=15%  Similarity=0.230  Sum_probs=67.3

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~   70 (169)
                      ++.+|||+|||+|     ++... +...++|+|+|+.|++.+++++.                    .++|.|.+.-|-.
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pcs  329 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPCT  329 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCCC
Confidence            3678999999999     44443 34699999999999999987754                    1244444321100


Q ss_pred             ---cccc-cchhhhc----------ccHHHHHHHHHhccCCcEEEEEeCC--hHHHHH-HHHHHhcCCCceec
Q psy13086         71 ---HFKR-CKYKWRI----------INQNLLSEYAYVLSEGGIVYTITDV--KDLHDW-IVSHFTEHPLFVEC  126 (169)
Q Consensus        71 ---~f~~-~h~~~~~----------~~~~~l~~~~rvLkpGG~l~i~~d~--~~~~~~-~~~~~~~~~~f~~~  126 (169)
                         .+.. ...+++.          .+..+|+++.++|||||+++++|-.  +...+. +...+..|+.|...
T Consensus       330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~  402 (445)
T PRK14904        330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAE  402 (445)
T ss_pred             CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEe
Confidence               0000 0000000          1346899999999999999998732  222222 23344567777654

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.90  E-value=6e-08  Score=75.19  Aligned_cols=140  Identities=11%  Similarity=-0.043  Sum_probs=75.8

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH-hc---cccceEEEeCCCCccccc------chhhhcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE-WS---LYLKKMFFLYPDPHFKRC------KYKWRII   82 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~-~~---~~~d~v~~~f~d~~f~~~------h~~~~~~   82 (169)
                      +.+|||||||+|     ++.. ....++|+|+|+.|++.|+++ +.   ..+......+++..||..      |+...  
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d--   90 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN--   90 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC--
Confidence            578999999999     3333 356889999999999998753 21   111100001333344421      22211  


Q ss_pred             cHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCeEEEE
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAV  162 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~  162 (169)
                      ...+++++.|+++   .+++......+....... ..+..+.....-...|.+..+.......++.+.+...|..+-...
T Consensus        91 ~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~  166 (194)
T TIGR02081        91 PEEILDEMLRVGR---HAIVSFPNFGYWRVRWSI-LTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA  166 (194)
T ss_pred             HHHHHHHHHHhCC---eEEEEcCChhHHHHHHHH-HhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence            3568888877765   445554444333311111 112111110000001111112356778889999999999997776


Q ss_pred             EE
Q psy13086        163 FR  164 (169)
Q Consensus       163 ~~  164 (169)
                      +.
T Consensus       167 ~~  168 (194)
T TIGR02081       167 AF  168 (194)
T ss_pred             Ee
Confidence            65

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02366 spermidine synthase

Probab=98.89  E-value=1.1e-08  Score=85.23  Aligned_cols=84  Identities=19%  Similarity=0.120  Sum_probs=62.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~   65 (169)
                      ..+||+||||+|     +++..+..+++.||+++.+++.|++.++                           +.+|.|.+
T Consensus        92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~  171 (308)
T PLN02366         92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV  171 (308)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence            578999999999     4433233689999999999999987431                           24677766


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      ..++|+.-    ...+...++++.++++|+|||.++.+..
T Consensus       172 D~~dp~~~----~~~L~t~ef~~~~~~~L~pgGvlv~q~~  207 (308)
T PLN02366        172 DSSDPVGP----AQELFEKPFFESVARALRPGGVVCTQAE  207 (308)
T ss_pred             cCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence            66665422    1233457899999999999999987654

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.89  E-value=2.1e-08  Score=87.12  Aligned_cols=110  Identities=15%  Similarity=0.201  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-c------------------------ccceEEE
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-L------------------------YLKKMFF   65 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~------------------------~~d~v~~   65 (169)
                      ++.+|||+|||+|     ++... +...|+++|+++.|++.+++++. .                        ++|.|.+
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~  331 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL  331 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence            3678999999999     55543 45699999999999999988754 1                        2333332


Q ss_pred             eCCC---Cccc-ccchhhh--------c--ccHHHHHHHHHhccCCcEEEEEe--CChHH-HHHHHHHHhcCCCceec
Q psy13086         66 LYPD---PHFK-RCKYKWR--------I--INQNLLSEYAYVLSEGGIVYTIT--DVKDL-HDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        66 ~f~d---~~f~-~~h~~~~--------~--~~~~~l~~~~rvLkpGG~l~i~~--d~~~~-~~~~~~~~~~~~~f~~~  126 (169)
                      .-|-   ..+. ....+++        +  .+.++++++.++|||||+++.+|  -.+.. ..-+...+..||.|+..
T Consensus       332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~  409 (434)
T PRK14901        332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLE  409 (434)
T ss_pred             eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEec
Confidence            1110   0000 0000000        0  13678999999999999998775  22222 22234455678888754

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.88  E-value=6.3e-09  Score=81.24  Aligned_cols=85  Identities=14%  Similarity=0.181  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc--eEEE-----eCCCCcccc------cch
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK--KMFF-----LYPDPHFKR------CKY   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d--~v~~-----~f~d~~f~~------~h~   77 (169)
                      ++.++||||||.|     ||..  +..|+++|+|+..++.+++.+. .+++  ....     .++ ..++.      .++
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f  106 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF  106 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred             CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence            4679999999999     5554  6799999999999988765332 1222  1000     111 11121      111


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..+-..+.+++.+...++|||.+++.+
T Consensus       107 L~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen  107 LQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             S-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            112123779999999999999988854

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.87  E-value=7.7e-09  Score=85.53  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             CCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHH--HHhc------------------
Q psy13086          3 WSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVI--DEWS------------------   57 (169)
Q Consensus         3 ~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~--~~~~------------------   57 (169)
                      |+++-++..+   .++.+|||||||+|     ++.+- ...|+|||.+..-..+.+  +++-                  
T Consensus       104 W~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~  179 (315)
T PF08003_consen  104 WDRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN  179 (315)
T ss_pred             HHHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc
Confidence            5555555432   34789999999999     44443 348999999987544321  2211                  


Q ss_pred             -cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         58 -LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        58 -~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       +.+|.|+..      ....|.+  ..-..|++++..|+|||.+++.|
T Consensus       180 ~~~FDtVF~M------GVLYHrr--~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  180 LGAFDTVFSM------GVLYHRR--SPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             cCCcCEEEEe------eehhccC--CHHHHHHHHHHhhCCCCEEEEEE
Confidence             233333210      0011111  13479999999999999999875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.86  E-value=1.8e-08  Score=67.54  Aligned_cols=76  Identities=18%  Similarity=0.237  Sum_probs=50.9

Q ss_pred             eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCCcc
Q psy13086         20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~~f   72 (169)
                      ++||+|||+|     ++. .+..+++|+|+++.+++.+++...                      ..+|.+....+..++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            4899999999     333 467899999999999998873211                      112222222111110


Q ss_pred             cccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         73 KRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        73 ~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                             .-....+++.+.+.|+|||.+++.
T Consensus        80 -------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 -------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence                   012367999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.86  E-value=1.1e-08  Score=85.80  Aligned_cols=86  Identities=16%  Similarity=0.239  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCC--------Ccccccchhhhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPD--------PHFKRCKYKWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d--------~~f~~~h~~~~~   81 (169)
                      ++.+|||||||+|     +++..+. ..|+|+|+++.|++.|++++. ..++.+.+...|        ..||.....  .
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~--~  157 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT--V  157 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC--C
Confidence            4679999999999     5555443 479999999999999998765 233433322211        112221100  0


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ........+.+.|+|||++++..
T Consensus       158 g~~~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        158 GVDEVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             chHHhHHHHHHhcCCCCEEEEEe
Confidence            01345567889999999998854

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.83  E-value=7e-09  Score=80.96  Aligned_cols=87  Identities=15%  Similarity=0.114  Sum_probs=55.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCC----CCcccccc------hhhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYP----DPHFKRCK------YKWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~----d~~f~~~h------~~~~   80 (169)
                      -.++||+|||.|     ||.+-  ..++++|+|+.+++.|++|+.  ..++.+...+|    +..||..+      +...
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~  121 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDD  121 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGSSS
T ss_pred             cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCCC
Confidence            367999999999     66664  489999999999999999876  22222222222    22333211      1110


Q ss_pred             -cccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         81 -IINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        81 -~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                       -....+++.+...|+|||.|++.+-.
T Consensus       122 ~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen  122 AEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence             01246889999999999999998743

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PTZ00146 fibrillarin; Provisional

Probab=98.83  E-value=1.8e-08  Score=83.23  Aligned_cols=78  Identities=12%  Similarity=0.203  Sum_probs=51.6

Q ss_pred             CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHH----HHHHHHHH--hc----------------cccceEEEeC
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVK----VSDYVIDE--WS----------------LYLKKMFFLY   67 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~----~l~~a~~~--~~----------------~~~d~v~~~f   67 (169)
                      .+..+|||+|||+|     +|... +...|++||+|+.    |++.|+++  +.                .++|.|++..
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv  210 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV  210 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence            34679999999999     55554 3568999999986    44555432  11                2244444433


Q ss_pred             CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ..|+          ....++.++.++|||||.|+|.
T Consensus       211 a~pd----------q~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        211 AQPD----------QARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCcc----------hHHHHHHHHHHhccCCCEEEEE
Confidence            2221          0124667899999999999995

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.82  E-value=1.7e-09  Score=86.24  Aligned_cols=87  Identities=15%  Similarity=0.178  Sum_probs=53.3

Q ss_pred             CCeEEEEcCccc-ccCcCC--CCcEEEEeCCHHHHHHHHHHhc----cccceE-EEe-CCCCcccccchhhhc----ccH
Q psy13086         18 KVEFVDVGCGKL-YLPMFP--STLILGLEIRVKVSDYVIDEWS----LYLKKM-FFL-YPDPHFKRCKYKWRI----INQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~~~p--~~~v~GiDis~~~l~~a~~~~~----~~~d~v-~~~-f~d~~f~~~h~~~~~----~~~   84 (169)
                      =.++||+||||| ......  -..++|||||++|++.|.++--    ...+.+ ++. ..+.-||......-+    ..+
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le  205 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALE  205 (287)
T ss_pred             cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchh
Confidence            367999999999 333332  2589999999999999987521    111111 111 111112211110000    026


Q ss_pred             HHHHHHHHhccCCcEEEEEe
Q psy13086         85 NLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .++.-+...|+|||.|.|++
T Consensus       206 ~~~~~aa~~L~~gGlfaFSv  225 (287)
T COG4976         206 GLFAGAAGLLAPGGLFAFSV  225 (287)
T ss_pred             hHHHHHHHhcCCCceEEEEe
Confidence            78899999999999999985

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.82  E-value=1.5e-08  Score=80.53  Aligned_cols=36  Identities=17%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID   54 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~   54 (169)
                      ++.+|||+|||.|     ||.  .+.+|+|||+|+.+++.|.+
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~~   77 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFFA   77 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHHH
Confidence            3579999999999     554  46899999999999998743

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.81  E-value=1.1e-07  Score=79.66  Aligned_cols=38  Identities=16%  Similarity=0.204  Sum_probs=32.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.+|||||||+|     +++.  +.+|+|+|+|+.|++.|+++.+
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~  187 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAK  187 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH
Confidence            579999999999     4433  5799999999999999988754

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.80  E-value=1.9e-08  Score=80.68  Aligned_cols=84  Identities=13%  Similarity=0.127  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeCC--------------CCcccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLYP--------------DPHFKR   74 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f~--------------d~~f~~   74 (169)
                      +..+|||||||+|     ++... ++.+++++|+++++++.|++++. ..+ +.+.+...              +..||.
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~  147 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF  147 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence            4678999999999     45544 46799999999999999998865 111 12221110              112221


Q ss_pred             c---chhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086         75 C---KYKWRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        75 ~---h~~~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                      .   ..+.  ....+++.+.+.|+|||.+++
T Consensus       148 VfiDa~k~--~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        148 AFVDADKP--NYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             EEECCCHH--HHHHHHHHHHHhcCCCeEEEE
Confidence            0   0011  125689999999999999876

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.76  E-value=1.2e-07  Score=81.70  Aligned_cols=87  Identities=10%  Similarity=0.074  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCccc---ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-c--------------------------ccceEEE
Q psy13086         17 KKVEFVDVGCGKL---YLPMF-PSTLILGLEIRVKVSDYVIDEWS-L--------------------------YLKKMFF   65 (169)
Q Consensus        17 ~~~~iLDiGCG~G---la~~~-p~~~v~GiDis~~~l~~a~~~~~-~--------------------------~~d~v~~   65 (169)
                      ++.+|||+|||+|   ++... ...++++||+|+.+++.|++|+. +                          ++|.|.+
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            3678999999999   33222 34589999999999999988754 1                          2333332


Q ss_pred             eCCCCcccccc-hhhhc--ccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         66 LYPDPHFKRCK-YKWRI--INQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        66 ~f~d~~f~~~h-~~~~~--~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      .  .|.|.... .....  -...+++...++|+|||.|+..|-
T Consensus       300 D--PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        300 D--PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             C--CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            1  12232111 00000  024566778899999999998653

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.76  E-value=3.3e-08  Score=77.90  Aligned_cols=38  Identities=13%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ..+|||||||+|     ++..  ...++|+|+|+.|++.|+++..
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~  106 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAP  106 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHH
Confidence            578999999999     4444  3569999999999999988754

>KOG2899|consensus

Probab=98.72  E-value=7.1e-08  Score=77.47  Aligned_cols=40  Identities=23%  Similarity=0.310  Sum_probs=35.8

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +..+|||||-.|     +|+.+....++|+||++..|+.|+++++
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r  103 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR  103 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence            457999999999     7788888899999999999999998765

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.69  E-value=9.6e-08  Score=77.35  Aligned_cols=95  Identities=17%  Similarity=0.282  Sum_probs=74.7

Q ss_pred             CCCeEEEEcCccc-----ccC-cCCCCcEEEEeCCHHHHHHHHHHhc-------------------------cccceEEE
Q psy13086         17 KKVEFVDVGCGKL-----YLP-MFPSTLILGLEIRVKVSDYVIDEWS-------------------------LYLKKMFF   65 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~-~~p~~~v~GiDis~~~l~~a~~~~~-------------------------~~~d~v~~   65 (169)
                      ++.+|||.|.|+|     |+. ..|...|+-.|+.++.++.|++++.                         ..+|+|++
T Consensus        40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL  119 (247)
T PF08704_consen   40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFL  119 (247)
T ss_dssp             TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred             CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEE
Confidence            4789999999999     443 3578899999999999999998754                         24789999


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhc-cCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVL-SEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvL-kpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                      ..|+||             .++..+.++| ||||.+.+=++.-+-.....+.+.+++ |..
T Consensus       120 Dlp~Pw-------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~g-f~~  166 (247)
T PF08704_consen  120 DLPDPW-------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHG-FTD  166 (247)
T ss_dssp             ESSSGG-------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTT-EEE
T ss_pred             eCCCHH-------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCC-Cee
Confidence            999998             4788889999 999999988887666666777777775 533

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.68  E-value=2.2e-08  Score=79.24  Aligned_cols=87  Identities=13%  Similarity=0.155  Sum_probs=51.2

Q ss_pred             CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCCC--------cccccchhhh
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPDP--------HFKRCKYKWR   80 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d~--------~f~~~h~~~~   80 (169)
                      .++.+|||||||+|     ++... +...|++||+.+.+++.|++++. ..++.+.+...|.        -||..+..-.
T Consensus        71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a  150 (209)
T PF01135_consen   71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAA  150 (209)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSB
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeec
Confidence            45789999999999     45443 44579999999999999998876 2222332222111        1222111100


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEe
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        .+..-..+.+.||+||++++--
T Consensus       151 --~~~ip~~l~~qL~~gGrLV~pi  172 (209)
T PF01135_consen  151 --VPEIPEALLEQLKPGGRLVAPI  172 (209)
T ss_dssp             --BSS--HHHHHTEEEEEEEEEEE
T ss_pred             --cchHHHHHHHhcCCCcEEEEEE
Confidence              1233455778899999998853

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=7.1e-08  Score=76.01  Aligned_cols=85  Identities=11%  Similarity=0.099  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCCCc--------ccccchhhhc
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPDPH--------FKRCKYKWRI   81 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d~~--------f~~~h~~~~~   81 (169)
                      .++.+|||||||+|     ||+.-.  +|+.||..+...+.|++|+. -.++.|.+.+-|-+        ||...-.-. 
T Consensus        71 ~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaa-  147 (209)
T COG2518          71 KPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAA-  147 (209)
T ss_pred             CCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeec-
Confidence            45789999999999     555432  99999999999999999876 22322433333321        221100000 


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       .+..=+.+.+-||+||++++-.
T Consensus       148 -a~~vP~~Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         148 -APEVPEALLDQLKPGGRLVIPV  169 (209)
T ss_pred             -cCCCCHHHHHhcccCCEEEEEE
Confidence             1223344567899999998853

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.63  E-value=3.2e-07  Score=84.18  Aligned_cols=90  Identities=12%  Similarity=0.173  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEEeC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFFLY   67 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~~f   67 (169)
                      ++.+|||+|||||     ++. ....+|++||+|+.+++.|++|+.                        .++|.|.+. 
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~-~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD-  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAAL-GGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID-  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC-
Confidence            3678999999999     232 233479999999999999998764                        134444332 


Q ss_pred             CCCcccccch---hhh--cccHHHHHHHHHhccCCcEEEEEeCChHH
Q psy13086         68 PDPHFKRCKY---KWR--IINQNLLSEYAYVLSEGGIVYTITDVKDL  109 (169)
Q Consensus        68 ~d~~f~~~h~---~~~--~~~~~~l~~~~rvLkpGG~l~i~~d~~~~  109 (169)
                       .|.|.....   ...  -....+++.+.++|+|||.+++.+....+
T Consensus       616 -PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~  661 (702)
T PRK11783        616 -PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF  661 (702)
T ss_pred             -CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC
Confidence             223321100   000  01256888999999999999998765443

>PHA03412 putative methyltransferase; Provisional

Probab=98.63  E-value=9.9e-08  Score=76.70  Aligned_cols=80  Identities=13%  Similarity=0.073  Sum_probs=52.0

Q ss_pred             CCeEEEEcCccc-----ccCcC---CCCcEEEEeCCHHHHHHHHHHhc---------------cccceEEEeCCCCccc-
Q psy13086         18 KVEFVDVGCGKL-----YLPMF---PSTLILGLEIRVKVSDYVIDEWS---------------LYLKKMFFLYPDPHFK-   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~---p~~~v~GiDis~~~l~~a~~~~~---------------~~~d~v~~~f~d~~f~-   73 (169)
                      +.+|||+|||+|     ++.+.   +..+|+|||+++.|++.|++++.               .++|.|..+-|  .++ 
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPP--Y~~~  127 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPP--FGKI  127 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCC--CCCc
Confidence            578999999999     33322   35799999999999999998753               34555544221  111 


Q ss_pred             -ccc----hhhhcccHHHHHHHHHhccCCcE
Q psy13086         74 -RCK----YKWRIINQNLLSEYAYVLSEGGI   99 (169)
Q Consensus        74 -~~h----~~~~~~~~~~l~~~~rvLkpGG~   99 (169)
                       ..+    +....+...+++...+++++|+.
T Consensus       128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence             111    11122346789999996666664

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.58  E-value=3.7e-07  Score=79.51  Aligned_cols=96  Identities=16%  Similarity=0.095  Sum_probs=60.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe------------CCCCcccccchh-
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL------------YPDPHFKRCKYK-   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~------------f~d~~f~~~h~~-   78 (169)
                      +.+|||+|||+|     +|...  ..++|+|+|+.|++.|++++. ..++.+.+.            +++..||..-.. 
T Consensus       298 ~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP  375 (443)
T PRK13168        298 GDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP  375 (443)
T ss_pred             CCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence            578999999999     44443  689999999999999998765 222222211            111122221000 


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHH
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSH  116 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~  116 (169)
                      .+.-....++.+.+ |+|++.+|++++..+++..+...
T Consensus       376 Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L  412 (443)
T PRK13168        376 PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVL  412 (443)
T ss_pred             CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHH
Confidence            00012456666655 79999999999877777655443

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.57  E-value=3.4e-07  Score=72.85  Aligned_cols=85  Identities=13%  Similarity=0.125  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-cccc-eEEEeC-----------CCCcccc---
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYLK-KMFFLY-----------PDPHFKR---   74 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~~f-----------~d~~f~~---   74 (169)
                      +..+|||||.+.|     +|...| +.+++.||+++++.+.|++++. ..++ .|.+..           .+..||.   
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI  138 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI  138 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence            4688999999999     777777 7899999999999999998876 1111 122111           1222331   


Q ss_pred             cchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         75 CKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        75 ~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      -+.|.  ..+.+++.+.++|+|||.+++-
T Consensus       139 DadK~--~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         139 DADKA--DYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             eCChh--hCHHHHHHHHHHhCCCcEEEEe
Confidence            01121  1478999999999999999873

>KOG2904|consensus

Probab=98.56  E-value=3.7e-07  Score=74.59  Aligned_cols=41  Identities=15%  Similarity=0.285  Sum_probs=35.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++..|||+|||+|     ++...|+.++++||.|+.++..|.+|+.
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~q  193 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQ  193 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHH
Confidence            3557999999999     5566789999999999999999987754

>KOG1975|consensus

Probab=98.54  E-value=3.3e-07  Score=76.32  Aligned_cols=100  Identities=19%  Similarity=0.270  Sum_probs=65.8

Q ss_pred             CCeEEEEcCccc--ccCcCC-C-CcEEEEeCCHHHHHHHHHHhc---c-----ccceEE-------------EeCCCCcc
Q psy13086         18 KVEFVDVGCGKL--YLPMFP-S-TLILGLEIRVKVSDYVIDEWS---L-----YLKKMF-------------FLYPDPHF   72 (169)
Q Consensus        18 ~~~iLDiGCG~G--la~~~p-~-~~v~GiDis~~~l~~a~~~~~---~-----~~d~v~-------------~~f~d~~f   72 (169)
                      ...+||+|||.|  |.+--. + ..++|+||++..|+.|++|..   +     .+.+++             +.++||.|
T Consensus       118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f  197 (389)
T KOG1975|consen  118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF  197 (389)
T ss_pred             ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence            567999999999  333211 1 389999999999999998754   1     122332             23466666


Q ss_pred             cc------cchhhhc--ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHH
Q psy13086         73 KR------CKYKWRI--INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHF  117 (169)
Q Consensus        73 ~~------~h~~~~~--~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~  117 (169)
                      |.      .|+....  -..-+++.+++.|||||.|+-+.+..+...+-....
T Consensus       198 DivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  198 DIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG  250 (389)
T ss_pred             ceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence            63      2322110  014589999999999999988777766655444443

>PLN02672 methionine S-methyltransferase

Probab=98.51  E-value=1.3e-06  Score=83.06  Aligned_cols=39  Identities=15%  Similarity=0.314  Sum_probs=34.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      +.+|||||||+|     ++..+|..+++|+|+|+.+++.|++|+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na  162 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL  162 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            458999999999     667788889999999999999997665

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.49  E-value=8.8e-07  Score=67.24  Aligned_cols=38  Identities=16%  Similarity=0.313  Sum_probs=32.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.+|||||||+|     ++.+  ..+++|+|+++.|++.+++++.
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~   56 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFA   56 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhc
Confidence            578999999999     4444  4689999999999999988764

>PLN02823 spermine synthase

Probab=98.48  E-value=2e-06  Score=72.59  Aligned_cols=85  Identities=15%  Similarity=0.119  Sum_probs=62.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..+||.||+|.|     +.+..+..+++.||+++++++.|++.++                          .++|.|.+.
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D  183 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD  183 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence            468999999999     2233345689999999999999986431                          467887777


Q ss_pred             CCCCcccccchhhhcccHHHHH-HHHHhccCCcEEEEEe
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLS-EYAYVLSEGGIVYTIT  104 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~-~~~rvLkpGG~l~i~~  104 (169)
                      .+||+-...  ...+...++++ .+.+.|+|||.+++..
T Consensus       184 ~~dp~~~~~--~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        184 LADPVEGGP--CYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             CCCccccCc--chhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            666642110  11244578998 8999999999998764

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.48  E-value=4.4e-07  Score=71.60  Aligned_cols=75  Identities=13%  Similarity=0.166  Sum_probs=55.9

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc----------------------------cccceE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS----------------------------LYLKKM   63 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~----------------------------~~~d~v   63 (169)
                      ..+||||||++|     +|...| +.+++.+|+++...+.|++.+.                            +++|.|
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V  125 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV  125 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence            578999999999     666665 5899999999999999987543                            135555


Q ss_pred             EEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         64 FFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        64 ~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ++...         +..  ....++.+.+.|+|||.+++-
T Consensus       126 FiDa~---------K~~--y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  126 FIDAD---------KRN--YLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             EEEST---------GGG--HHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEccc---------ccc--hhhHHHHHhhhccCCeEEEEc
Confidence            54321         111  256888899999999999874

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.46  E-value=1.5e-06  Score=74.17  Aligned_cols=91  Identities=19%  Similarity=0.218  Sum_probs=59.7

Q ss_pred             CCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEE------------------eCCCCccccc
Q psy13086         18 KVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFF------------------LYPDPHFKRC   75 (169)
Q Consensus        18 ~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~------------------~f~d~~f~~~   75 (169)
                      ..+|||+|||+|   ++...+..+++|||+++.+++.|++|+. ..++.+.+                  .+-||-..  
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~--  311 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR--  311 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC--
Confidence            468999999999   2222345789999999999999998764 11111111                  11122111  


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHH
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSH  116 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~  116 (169)
                           =..+.+++.+. .++|++.+|++.+...++......
T Consensus       312 -----G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L  346 (374)
T TIGR02085       312 -----GIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL  346 (374)
T ss_pred             -----CCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh
Confidence                 12356667775 489999999998877777755543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.45  E-value=1.1e-06  Score=73.33  Aligned_cols=95  Identities=16%  Similarity=0.132  Sum_probs=56.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC---------CCcccccch--hhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP---------DPHFKRCKY--KWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~---------d~~f~~~h~--~~~   80 (169)
                      +.+|||+|||+|     +|.  +..+|+|+|+|+.|++.|++++. ..++.+.+...         +..||..-.  -|.
T Consensus       174 ~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~  251 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR  251 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence            578999999999     444  45799999999999999988764 12222211100         011221000  001


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHH
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVS  115 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~  115 (169)
                      =....+++.+ ..++|++.+|++++..........
T Consensus       252 G~~~~~~~~l-~~~~~~~ivyvsc~p~t~~rd~~~  285 (315)
T PRK03522        252 GIGKELCDYL-SQMAPRFILYSSCNAQTMAKDLAH  285 (315)
T ss_pred             CccHHHHHHH-HHcCCCeEEEEECCcccchhHHhh
Confidence            0123444444 447899999998877776664433

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.43  E-value=1.6e-06  Score=75.20  Aligned_cols=93  Identities=15%  Similarity=0.090  Sum_probs=56.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC------------CCcccccch--
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP------------DPHFKRCKY--   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~------------d~~f~~~h~--   77 (169)
                      +.+|||+|||+|     +|..  ...|+|+|+++.|++.|++++. ..++.+.+...            +..||..-.  
T Consensus       293 ~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP  370 (431)
T TIGR00479       293 EELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP  370 (431)
T ss_pred             CCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence            578999999999     4443  2589999999999999998764 11222221111            111221000  


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHH
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWI  113 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~  113 (169)
                      -|.=....+++.+.+ |+|++.+|++++...+...+
T Consensus       371 Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~  405 (431)
T TIGR00479       371 PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDL  405 (431)
T ss_pred             CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHH
Confidence            000013567777654 89999999987755555433

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.42  E-value=5.4e-07  Score=68.08  Aligned_cols=65  Identities=15%  Similarity=0.168  Sum_probs=41.5

Q ss_pred             EEEeCCHHHHHHHHHHhc--c-----ccce-----EEEeCCCCcccccch---hhhc-ccHHHHHHHHHhccCCcEEEEE
Q psy13086         40 LGLEIRVKVSDYVIDEWS--L-----YLKK-----MFFLYPDPHFKRCKY---KWRI-INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        40 ~GiDis~~~l~~a~~~~~--~-----~~d~-----v~~~f~d~~f~~~h~---~~~~-~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      +|+|+|++|++.|+++.+  .     .++.     ..+++++..||..-.   .+.+ ....++++++|+|||||.|++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            599999999999976542  0     1111     123455555653210   0111 1367999999999999999987


Q ss_pred             e
Q psy13086        104 T  104 (169)
Q Consensus       104 ~  104 (169)
                      +
T Consensus        81 d   81 (160)
T PLN02232         81 D   81 (160)
T ss_pred             E
Confidence            4

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.41  E-value=1e-07  Score=83.30  Aligned_cols=86  Identities=19%  Similarity=0.242  Sum_probs=61.4

Q ss_pred             CeEEEEcCccc-ccCcCCCCcEEEE-----eCCHHHHHHHHHH-hc---cccceEEEeCCCCcccccchhhhccc-----
Q psy13086         19 VEFVDVGCGKL-YLPMFPSTLILGL-----EIRVKVSDYVIDE-WS---LYLKKMFFLYPDPHFKRCKYKWRIIN-----   83 (169)
Q Consensus        19 ~~iLDiGCG~G-la~~~p~~~v~Gi-----Dis~~~l~~a~~~-~~---~~~d~v~~~f~d~~f~~~h~~~~~~~-----   83 (169)
                      .++||||||+| .+.+.-+.+|+.+     |..+..++.|.+| ++   +.+..-.++||+..||..|..+-++.     
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~  198 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND  198 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc
Confidence            57999999999 4444333344444     4444578888776 44   33434468999999998887664432     


Q ss_pred             HHHHHHHHHhccCCcEEEEEe
Q psy13086         84 QNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .-+|-++-|+|+|||.|+++.
T Consensus       199 g~~l~evdRvLRpGGyfv~S~  219 (506)
T PF03141_consen  199 GFLLFEVDRVLRPGGYFVLSG  219 (506)
T ss_pred             cceeehhhhhhccCceEEecC
Confidence            458899999999999999975

; GO: 0008168 methyltransferase activity

>PLN02476 O-methyltransferase

Probab=98.41  E-value=1.2e-06  Score=72.10  Aligned_cols=84  Identities=12%  Similarity=0.065  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCCC--------------Ccccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYPD--------------PHFKR   74 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~d--------------~~f~~   74 (169)
                      +..+|||||||+|     +|...| +..++.+|.++++++.|++++.  +--+.|.+...+              ..||-
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~  197 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF  197 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence            4678999999999     555544 5689999999999999998765  111122221110              11111


Q ss_pred             c---chhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086         75 C---KYKWRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        75 ~---h~~~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                      .   ..+..  ....++.+.+.|+|||.+++
T Consensus       198 VFIDa~K~~--Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        198 AFVDADKRM--YQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             EEECCCHHH--HHHHHHHHHHhcCCCcEEEE
Confidence            0   01111  25789999999999999876

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.37  E-value=6.5e-07  Score=71.22  Aligned_cols=35  Identities=14%  Similarity=0.288  Sum_probs=29.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID   54 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~   54 (169)
                      ..+||..|||.|     ||.+  +.+|+|+|+|+.+++.|.+
T Consensus        38 ~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~   77 (218)
T PF05724_consen   38 GGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFE   77 (218)
T ss_dssp             SEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHH
T ss_pred             CCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHH
Confidence            578999999999     5554  5799999999999999843

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.34  E-value=2e-06  Score=68.87  Aligned_cols=86  Identities=13%  Similarity=0.067  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------cccceEEEe-CCC-----
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------LYLKKMFFL-YPD-----   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------~~~d~v~~~-f~d-----   69 (169)
                      ++.+||+.|||.|     ||..  +..|+|+|+|+.+++.+.++..                ..++.+.-. |.-     
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~  120 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN  120 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence            3579999999999     5543  5689999999999999865311                111111111 110     


Q ss_pred             --Cccccc------chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         70 --PHFKRC------KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        70 --~~f~~~------h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        ..||..      ++...-.-.+.++.+.++|+|||.+++.+
T Consensus       121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence              123321      00000011579999999999999998875

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.28  E-value=1.7e-06  Score=69.09  Aligned_cols=84  Identities=18%  Similarity=0.091  Sum_probs=53.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCc--ccc------cchhhhcccH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPH--FKR------CKYKWRIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~--f~~------~h~~~~~~~~   84 (169)
                      ..+|||||+|+|     +++++|+.+++.+|. +.+++.+++  ...+..+--.|-++.  .+.      .|.-..-...
T Consensus       101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~d~~~~  177 (241)
T PF00891_consen  101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--ADRVEFVPGDFFDPLPVADVYLLRHVLHDWSDEDCV  177 (241)
T ss_dssp             SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--TTTEEEEES-TTTCCSSESEEEEESSGGGS-HHHHH
T ss_pred             ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--ccccccccccHHhhhccccceeeehhhhhcchHHHH
Confidence            568999999999     778999999999997 888888876  211111111111221  221      1110010135


Q ss_pred             HHHHHHHHhccCC--cEEEEEe
Q psy13086         85 NLLSEYAYVLSEG--GIVYTIT  104 (169)
Q Consensus        85 ~~l~~~~rvLkpG--G~l~i~~  104 (169)
                      .+|+++++.|+||  |+|+|..
T Consensus       178 ~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  178 KILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             HHHHHHHHHSEECTTEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCCeEEEEe
Confidence            7999999999999  9999974

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.26  E-value=6.2e-06  Score=64.75  Aligned_cols=39  Identities=18%  Similarity=0.187  Sum_probs=31.5

Q ss_pred             CCeEEEEcCccc---c--cCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL---Y--LPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G---l--a~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.++||+|||+|   +  +.+. ..+++++|+++.+++.|++++.
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~   97 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLA   97 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHH
Confidence            578999999999   2  1222 3699999999999999988764

>KOG1331|consensus

Probab=98.26  E-value=8.4e-07  Score=72.69  Aligned_cols=86  Identities=22%  Similarity=0.255  Sum_probs=62.9

Q ss_pred             CCeEEEEcCccc-ccCcCCCCcEEEEeCCHHHHHHHHHHhc---cccceEEEeCCCCcccc------cchh-hhcccHHH
Q psy13086         18 KVEFVDVGCGKL-YLPMFPSTLILGLEIRVKVSDYVIDEWS---LYLKKMFFLYPDPHFKR------CKYK-WRIINQNL   86 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~~~p~~~v~GiDis~~~l~~a~~~~~---~~~d~v~~~f~d~~f~~------~h~~-~~~~~~~~   86 (169)
                      +..+||+|||.| ....+|...++|.|++...+.-|++.-.   .-.|++.++++++.|+.      .||. .+.-...+
T Consensus        46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~  125 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERA  125 (293)
T ss_pred             cceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHH
Confidence            678999999999 7777799999999999999988865321   22445556777777764      2321 11112689


Q ss_pred             HHHHHHhccCCcEEEEE
Q psy13086         87 LSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        87 l~~~~rvLkpGG~l~i~  103 (169)
                      ++++.|+|+|||...+-
T Consensus       126 l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen  126 LEELLRVLRPGGNALVY  142 (293)
T ss_pred             HHHHHHHhcCCCceEEE
Confidence            99999999999986653

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.26  E-value=1.1e-06  Score=73.80  Aligned_cols=40  Identities=18%  Similarity=0.072  Sum_probs=35.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ..++||||||+|     ++.+.++++++|+|+++.+++.|++++.
T Consensus       115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~  159 (321)
T PRK11727        115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIIS  159 (321)
T ss_pred             CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            578999999999     6667788999999999999999998765

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.24  E-value=1.2e-06  Score=69.04  Aligned_cols=78  Identities=17%  Similarity=0.217  Sum_probs=41.1

Q ss_pred             CCeEEEEcCccc-ccCcCCC-CcEEEEeCCHHH--HHHH-HHHhc---cccceEEEeCCCCcccccchhhhcccHHHHHH
Q psy13086         18 KVEFVDVGCGKL-YLPMFPS-TLILGLEIRVKV--SDYV-IDEWS---LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSE   89 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~~~p~-~~v~GiDis~~~--l~~a-~~~~~---~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~   89 (169)
                      ...|-|+|||.+ +|+..++ .+|.-.|+-..-  +-.| -.+++   +++|.+....+----         ....+++|
T Consensus        73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---------n~~~fi~E  143 (219)
T PF05148_consen   73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGT---------NWPDFIRE  143 (219)
T ss_dssp             TS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS----------HHHHHHH
T ss_pred             CEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCC---------CcHHHHHH
Confidence            578999999999 7765543 345555554310  0000 01222   567765443321100         12689999


Q ss_pred             HHHhccCCcEEEEEe
Q psy13086         90 YAYVLSEGGIVYTIT  104 (169)
Q Consensus        90 ~~rvLkpGG~l~i~~  104 (169)
                      ..|+|||||.|.|+.
T Consensus       144 A~RvLK~~G~L~IAE  158 (219)
T PF05148_consen  144 ANRVLKPGGILKIAE  158 (219)
T ss_dssp             HHHHEEEEEEEEEEE
T ss_pred             HHheeccCcEEEEEE
Confidence            999999999999984

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.20  E-value=1.2e-05  Score=65.06  Aligned_cols=98  Identities=14%  Similarity=0.144  Sum_probs=67.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------c-ccceEEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------L-YLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~-~~d~v~~   65 (169)
                      ..+||=||-|.|     +.+..+-.+++.||+++.+++.|++-++                          . .+|.|.+
T Consensus        77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~  156 (246)
T PF01564_consen   77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV  156 (246)
T ss_dssp             T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred             cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence            678999999999     4444445799999999999999975211                          4 6888887


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC----hHHHHHHHHHHhc
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV----KDLHDWIVSHFTE  119 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~----~~~~~~~~~~~~~  119 (169)
                      ...||.-...    .+...++++.+.++|+|||.+++....    +.....+...+..
T Consensus       157 D~~dp~~~~~----~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~  210 (246)
T PF01564_consen  157 DLTDPDGPAP----NLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRS  210 (246)
T ss_dssp             ESSSTTSCGG----GGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHT
T ss_pred             eCCCCCCCcc----cccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHH
Confidence            7776542221    156789999999999999999987522    2333444444443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=7e-06  Score=63.79  Aligned_cols=40  Identities=13%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             CCeEEEEcCccc---ccC-cCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL---YLP-MFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G---la~-~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.+|+|+|||||   ++. ......|+|||+++++++.|++|..
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~   89 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAE   89 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHH
Confidence            567999999999   333 3444699999999999999998765

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.17  E-value=7.7e-06  Score=68.62  Aligned_cols=88  Identities=18%  Similarity=0.178  Sum_probs=57.0

Q ss_pred             CCeEEEEcCccc---------ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccce-----EEEeCCCC--cccc--cchh
Q psy13086         18 KVEFVDVGCGKL---------YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKK-----MFFLYPDP--HFKR--CKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G---------la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~-----v~~~f~d~--~f~~--~h~~   78 (169)
                      ...++|+|||+|         +........+++||||..+++.+.+++. ..+..     +.-.|.++  |...  ....
T Consensus        77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~  156 (319)
T TIGR03439        77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR  156 (319)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence            568999999999         2222235789999999999999988776 33332     22233221  0000  0001


Q ss_pred             hhcc--------------cHHHHHHHHH-hccCCcEEEEEeC
Q psy13086         79 WRII--------------NQNLLSEYAY-VLSEGGIVYTITD  105 (169)
Q Consensus        79 ~~~~--------------~~~~l~~~~r-vLkpGG~l~i~~d  105 (169)
                      ++++              ...+|+++++ .|+|||.|++..|
T Consensus       157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D  198 (319)
T TIGR03439       157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD  198 (319)
T ss_pred             ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence            1111              2579999999 9999999999755

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.17  E-value=2e-06  Score=70.32  Aligned_cols=39  Identities=13%  Similarity=0.218  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|||||||+|     ++.+.  .+++|+|+++.|++.+++++.
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~   85 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA   85 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc
Confidence            3578999999999     55554  389999999999999988763

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.14  E-value=7.9e-06  Score=65.49  Aligned_cols=33  Identities=15%  Similarity=0.160  Sum_probs=27.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDY   51 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~   51 (169)
                      +.++||||||||     +++. +...|+|||++.+|+..
T Consensus        76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence            678999999999     4443 44689999999988875

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.11  E-value=4.3e-06  Score=65.84  Aligned_cols=84  Identities=12%  Similarity=0.140  Sum_probs=53.4

Q ss_pred             eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc----eEEEeCCCC-c------------ccc--
Q psy13086         20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK----KMFFLYPDP-H------------FKR--   74 (169)
Q Consensus        20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d----~v~~~f~d~-~------------f~~--   74 (169)
                      +|||||||||     +|+.+|..++.--|++...+...+..+. ..++    -+.+....+ |            +|.  
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            5999999999     8899999999999999987654443322 1111    111211111 1            121  


Q ss_pred             ----cchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         75 ----CKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        75 ----~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                          .|-..--....+++...++|+|||.|++-
T Consensus       108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y  140 (204)
T PF06080_consen  108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLY  140 (204)
T ss_pred             ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence                12111112367999999999999999884

The function of this family is unknown.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.10  E-value=4.5e-06  Score=65.45  Aligned_cols=37  Identities=16%  Similarity=0.201  Sum_probs=26.9

Q ss_pred             CCeEEEEcCccc---------ccC----cCC-CCcEEEEeCCHHHHHHHHH
Q psy13086         18 KVEFVDVGCGKL---------YLP----MFP-STLILGLEIRVKVSDYVID   54 (169)
Q Consensus        18 ~~~iLDiGCG~G---------la~----~~p-~~~v~GiDis~~~l~~a~~   54 (169)
                      .-+|+.+||+||         +..    ..+ +.+++|.|+|+.+++.|++
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            578999999999         222    122 4699999999999999974

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.08  E-value=3.9e-05  Score=63.36  Aligned_cols=85  Identities=16%  Similarity=0.140  Sum_probs=66.4

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEeC
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFLY   67 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~f   67 (169)
                      .+||=||-|.|     +.+..+..+++.|||++++++.|++-++                          ..+|.|.+..
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            48999999999     4455566799999999999999987433                          4578877776


Q ss_pred             CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                      .||. .   ....+....|++.+++.|+++|.+..++..+
T Consensus       158 tdp~-g---p~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~  193 (282)
T COG0421         158 TDPV-G---PAEALFTEEFYEGCRRALKEDGIFVAQAGSP  193 (282)
T ss_pred             CCCC-C---cccccCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            6661 1   1234567899999999999999999986443

>PRK04148 hypothetical protein; Provisional

Probab=98.08  E-value=1e-05  Score=59.75  Aligned_cols=39  Identities=13%  Similarity=0.083  Sum_probs=31.4

Q ss_pred             CCeEEEEcCccc--ccCc--CCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL--YLPM--FPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G--la~~--~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      +.++||||||+|  +|..  ..+..|+|+|+++..++.|+++.
T Consensus        17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~   59 (134)
T PRK04148         17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG   59 (134)
T ss_pred             CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC
Confidence            578999999999  3322  23579999999999999998763

>KOG3420|consensus

Probab=98.07  E-value=1.6e-06  Score=64.99  Aligned_cols=47  Identities=19%  Similarity=0.378  Sum_probs=36.9

Q ss_pred             ccCCCCCCCCCCCCCeEEEEcCccc-c--cCcCC-CCcEEEEeCCHHHHHHHHHHhc
Q psy13086          5 PLYPELKDPTCEKKVEFVDVGCGKL-Y--LPMFP-STLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus         5 ~~f~~~~~~~~~~~~~iLDiGCG~G-l--a~~~p-~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ..+|+.+      +.+++|+|||.| |  +-.++ ...++|+||.+.+++.+++|..
T Consensus        42 ~TygdiE------gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNae   92 (185)
T KOG3420|consen   42 NTYGDIE------GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAE   92 (185)
T ss_pred             hhhcccc------CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchH
Confidence            3466665      688999999999 3  33444 4689999999999999988754

>KOG3191|consensus

Probab=98.06  E-value=3e-05  Score=60.03  Aligned_cols=88  Identities=19%  Similarity=0.330  Sum_probs=57.4

Q ss_pred             CCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEe--C-CC
Q psy13086         18 KVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFL--Y-PD   69 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~--f-~d   69 (169)
                      ...+||||||+|     |++. -|++.+++.|+++.+++..++-+.                   +++|.+..+  | |.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt  123 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT  123 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence            467999999999     4443 378899999999998886543211                   567665432  1 11


Q ss_pred             C-cccccc-----h----hhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         70 P-HFKRCK-----Y----KWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        70 ~-~f~~~h-----~----~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      + .....+     |    .-+-+...++..+-.+|.|.|.||+..-
T Consensus       124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~  169 (209)
T KOG3191|consen  124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL  169 (209)
T ss_pred             CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence            1 111000     1    1122457789999999999999999763

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.05  E-value=2e-05  Score=63.88  Aligned_cols=84  Identities=13%  Similarity=0.031  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCCC---------------Cccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYPD---------------PHFK   73 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~d---------------~~f~   73 (169)
                      +..+|||||+++|     +|... ++.+++.+|+++...+.|++.+.  +..+.|.+...+               ..||
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD  158 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD  158 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence            3578999999999     55554 46799999999999999988764  111222221110               1111


Q ss_pred             c---cchhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086         74 R---CKYKWRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        74 ~---~h~~~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                      -   -+.+..  ....++.+.+.|+|||.+++
T Consensus       159 ~iFiDadK~~--Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        159 FIFVDADKDN--YINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             EEEecCCHHH--hHHHHHHHHHhcCCCeEEEE
Confidence            1   011111  25688888999999999876

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.04  E-value=2.1e-05  Score=67.46  Aligned_cols=91  Identities=13%  Similarity=0.052  Sum_probs=56.6

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCC--------CcccccchhhhcccH
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPD--------PHFKRCKYKWRIINQ   84 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d--------~~f~~~h~~~~~~~~   84 (169)
                      .+|||++||+|     ++...+...|+++|+++.+++.+++|+. +.++.+.+...|        ..||......-=...
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~Gs~~  138 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPFGSPA  138 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCCCCcH
Confidence            58999999999     4444454589999999999999998875 223322111111        112211000000024


Q ss_pred             HHHHHHHHhccCCcEEEEE-eCChHH
Q psy13086         85 NLLSEYAYVLSEGGIVYTI-TDVKDL  109 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~-~d~~~~  109 (169)
                      .++....+.+++||.++++ +|...+
T Consensus       139 ~~l~~al~~~~~~gilyvSAtD~~~L  164 (382)
T PRK04338        139 PFLDSAIRSVKRGGLLCVTATDTAPL  164 (382)
T ss_pred             HHHHHHHHHhcCCCEEEEEecCchhh
Confidence            6888877889999999997 354433

>KOG3045|consensus

Probab=98.04  E-value=4.8e-06  Score=67.71  Aligned_cols=78  Identities=15%  Similarity=0.226  Sum_probs=46.4

Q ss_pred             CCCeEEEEcCccc-ccCcCCCCcEEEEeCCHH---HHHHHHHHhc---cccceEEEeCCCCcccccchhhhcccHHHHHH
Q psy13086         17 KKVEFVDVGCGKL-YLPMFPSTLILGLEIRVK---VSDYVIDEWS---LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSE   89 (169)
Q Consensus        17 ~~~~iLDiGCG~G-la~~~p~~~v~GiDis~~---~l~~a~~~~~---~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~   89 (169)
                      ++..|-|+|||-+ +|..-+. .|.-+|+-..   ++..=..+++   .++|.+..+.+----         ....|++|
T Consensus       180 ~~~vIaD~GCGEakiA~~~~~-kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt---------n~~df~kE  249 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIASSERH-KVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGT---------NLADFIKE  249 (325)
T ss_pred             CceEEEecccchhhhhhcccc-ceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcc---------cHHHHHHH
Confidence            3678999999999 7753322 4555554321   1110011233   566654433221100         12689999


Q ss_pred             HHHhccCCcEEEEEe
Q psy13086         90 YAYVLSEGGIVYTIT  104 (169)
Q Consensus        90 ~~rvLkpGG~l~i~~  104 (169)
                      ..|+|||||.++|+.
T Consensus       250 a~RiLk~gG~l~IAE  264 (325)
T KOG3045|consen  250 ANRILKPGGLLYIAE  264 (325)
T ss_pred             HHHHhccCceEEEEe
Confidence            999999999999984

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.01  E-value=1.4e-05  Score=61.22  Aligned_cols=86  Identities=13%  Similarity=0.137  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------cccceEEEeCCCCc---------cccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------LYLKKMFFLYPDPH---------FKRC   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------~~~d~v~~~f~d~~---------f~~~   75 (169)
                      ++.+|||||||+|     ++...+...|+..|.++ .++.++.|+.       ..++...+.+.++.         ||..
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I  123 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI  123 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred             CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence            3679999999999     33344678999999999 8888887765       22222223332211         1110


Q ss_pred             c-----hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 K-----YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h-----~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .     +. .-..+.+++-+.++|+|+|.++++.
T Consensus       124 lasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  124 LASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             EEES--S--GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             EEecccch-HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            0     00 0123789999999999999988775

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.00  E-value=2.5e-05  Score=63.55  Aligned_cols=77  Identities=16%  Similarity=0.180  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH-hc-----------cccceEEE-eCCCCcccccchh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE-WS-----------LYLKKMFF-LYPDPHFKRCKYK   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~-~~-----------~~~d~v~~-~f~d~~f~~~h~~   78 (169)
                      +..++||||.|.|     ++..+  .+|.+-|+|..|....+++ +.           .++|.|.. +.-|-     +. 
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDR-----c~-  165 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDR-----CD-  165 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhc-----cC-
Confidence            3578999999999     65555  4699999999998887664 11           24554432 11111     11 


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                         -...+|+.+++.|+|+|+++++.
T Consensus       166 ---~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  166 ---RPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             ---CHHHHHHHHHHHhCCCCEEEEEE
Confidence               12479999999999999999874

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.99  E-value=8.4e-06  Score=66.17  Aligned_cols=39  Identities=13%  Similarity=0.284  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|||||||+|     +++.  ..+++|+|+++.|++.+++++.
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~   72 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEI   72 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhc
Confidence            4678999999999     4444  3589999999999999988764

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.98  E-value=5.4e-05  Score=64.27  Aligned_cols=86  Identities=13%  Similarity=0.169  Sum_probs=57.1

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe--------------------------
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL--------------------------   66 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~--------------------------   66 (169)
                      .++||+|||+|     ++...  ..|+|||+++.|++.|++|+. ..++.+.+.                          
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence            36999999999     55443  489999999999999998865 223222211                          


Q ss_pred             -------CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHH
Q psy13086         67 -------YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSH  116 (169)
Q Consensus        67 -------f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~  116 (169)
                             +-||-       |.=..+.+++.+.   +|++.+|++++..+++..+...
T Consensus       277 ~~~~d~v~lDPP-------R~G~~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L  323 (353)
T TIGR02143       277 SYNCSTIFVDPP-------RAGLDPDTCKLVQ---AYERILYISCNPETLKANLEQL  323 (353)
T ss_pred             cCCCCEEEECCC-------CCCCcHHHHHHHH---cCCcEEEEEcCHHHHHHHHHHH
Confidence                   11111       0001245666554   4899999999888887766544

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.98  E-value=4.2e-05  Score=59.50  Aligned_cols=39  Identities=15%  Similarity=0.050  Sum_probs=31.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.++||++||+|     ++.+. ...+++||.++.+++.+++++.
T Consensus        50 g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~   93 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLA   93 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHH
Confidence            578999999999     33332 2489999999999999987754

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.98  E-value=1.1e-05  Score=66.69  Aligned_cols=37  Identities=5%  Similarity=-0.006  Sum_probs=29.3

Q ss_pred             CCeEEEEcCccc---------ccCcCC----CCcEEEEeCCHHHHHHHHH
Q psy13086         18 KVEFVDVGCGKL---------YLPMFP----STLILGLEIRVKVSDYVID   54 (169)
Q Consensus        18 ~~~iLDiGCG~G---------la~~~p----~~~v~GiDis~~~l~~a~~   54 (169)
                      .-+|+..||.||         +.+..+    +.+|+|.|||..+|+.|++
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~  165 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS  165 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence            468999999999         222221    4689999999999999974

>PRK00536 speE spermidine synthase; Provisional

Probab=97.97  E-value=6.3e-05  Score=61.50  Aligned_cols=89  Identities=11%  Similarity=0.032  Sum_probs=57.6

Q ss_pred             CCeEEEEcCccc-ccC---cCCCCcEEEEeCCHHHHHHHHHHhc---cccce--EE--EeCCC---Ccccccchhhhccc
Q psy13086         18 KVEFVDVGCGKL-YLP---MFPSTLILGLEIRVKVSDYVIDEWS---LYLKK--MF--FLYPD---PHFKRCKYKWRIIN   83 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~---~~p~~~v~GiDis~~~l~~a~~~~~---~~~d~--v~--~~f~d---~~f~~~h~~~~~~~   83 (169)
                      ..+||=||-|.| .++   ++|. +|+-|||++.+++.+++-++   +.+|.  +.  ..+.+   ..||..- ...+..
T Consensus        73 pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVII-vDs~~~  150 (262)
T PRK00536         73 LKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLII-CLQEPD  150 (262)
T ss_pred             CCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEE-EcCCCC
Confidence            588999999999 222   3454 99999999999999998554   11111  00  11110   1222211 011134


Q ss_pred             HHHHHHHHHhccCCcEEEEEeCChH
Q psy13086         84 QNLLSEYAYVLSEGGIVYTITDVKD  108 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~d~~~  108 (169)
                      +.+.+.++|.|+|||.++.++..+.
T Consensus       151 ~~fy~~~~~~L~~~Gi~v~Qs~sp~  175 (262)
T PRK00536        151 IHKIDGLKRMLKEDGVFISVAKHPL  175 (262)
T ss_pred             hHHHHHHHHhcCCCcEEEECCCCcc
Confidence            6899999999999999999865443

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.94  E-value=2e-05  Score=64.55  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=30.0

Q ss_pred             CCeEEEEcCccc---------ccCcCC-----CCcEEEEeCCHHHHHHHH
Q psy13086         18 KVEFVDVGCGKL---------YLPMFP-----STLILGLEIRVKVSDYVI   53 (169)
Q Consensus        18 ~~~iLDiGCG~G---------la~~~p-----~~~v~GiDis~~~l~~a~   53 (169)
                      .-+|+-+||+||         +.+..+     ..+|+|.|||..+|+.|+
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~  146 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR  146 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence            578999999999         334443     479999999999999996

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.93  E-value=1.4e-05  Score=62.94  Aligned_cols=74  Identities=14%  Similarity=0.209  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~   70 (169)
                      ++.+|||+-||-|     +|+..+...|+++|+++.+++.+++++.                     ..+|.+.+..|..
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~~  180 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPES  180 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TSS
T ss_pred             cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChHH
Confidence            3689999999999     5554566789999999999999988765                     2223333333221


Q ss_pred             cccccchhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                                  ...++..+.+.+|+||.+.+
T Consensus       181 ------------~~~fl~~~~~~~~~~g~ihy  200 (200)
T PF02475_consen  181 ------------SLEFLDAALSLLKEGGIIHY  200 (200)
T ss_dssp             ------------GGGGHHHHHHHEEEEEEEEE
T ss_pred             ------------HHHHHHHHHHHhcCCcEEEC
Confidence                        24689999999999998864

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.93  E-value=3.6e-05  Score=59.29  Aligned_cols=89  Identities=20%  Similarity=0.190  Sum_probs=51.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCC---------cEEEEeCCHHHHHHHHHHhc----------------------cccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPST---------LILGLEIRVKVSDYVIDEWS----------------------LYLK   61 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~---------~v~GiDis~~~l~~a~~~~~----------------------~~~d   61 (169)
                      +..+||-=||+|     .+...++.         .++|+|+++++++.|++|+.                      +++|
T Consensus        29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d  108 (179)
T PF01170_consen   29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD  108 (179)
T ss_dssp             TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred             CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence            578999999999     12222222         39999999999999998865                      1222


Q ss_pred             eEEEeCCCCcccccch-hh--hcccHHHHHHHHHhccCCcEEEEEeCChHHH
Q psy13086         62 KMFFLYPDPHFKRCKY-KW--RIINQNLLSEYAYVLSEGGIVYTITDVKDLH  110 (169)
Q Consensus        62 ~v~~~f~d~~f~~~h~-~~--~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~  110 (169)
                      .|..   ||-+..+.- ..  .-....+++++.++|++ ..+++.+..+.+.
T Consensus       109 ~Ivt---nPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~~  156 (179)
T PF01170_consen  109 AIVT---NPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRELE  156 (179)
T ss_dssp             EEEE---E--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCHH
T ss_pred             EEEE---CcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHH
Confidence            2211   111111110 00  11246799999999999 5555555555443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.92  E-value=0.00015  Score=63.78  Aligned_cols=106  Identities=11%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYP   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~   68 (169)
                      ++.+|||++||.|     +|... ....++++|+++.-++.+++++.                      ..+|.|.+.-|
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP  192 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP  192 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence            4689999999999     55554 34699999999998888877654                      23444443221


Q ss_pred             C---Cccccc-----chh----hhc--ccHHHHHHHHHhccCCcEEEEEe--CChHHHHHHHHH-HhcCCC
Q psy13086         69 D---PHFKRC-----KYK----WRI--INQNLLSEYAYVLSEGGIVYTIT--DVKDLHDWIVSH-FTEHPL  122 (169)
Q Consensus        69 d---~~f~~~-----h~~----~~~--~~~~~l~~~~rvLkpGG~l~i~~--d~~~~~~~~~~~-~~~~~~  122 (169)
                      =   ..+...     .+.    .++  .+.++|....+.|||||+++-+|  -.+...+...+. +.+|+.
T Consensus       193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~  263 (470)
T PRK11933        193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPD  263 (470)
T ss_pred             CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCC
Confidence            0   011000     000    000  24679999999999999998775  333333333332 344654

>KOG1661|consensus

Probab=97.91  E-value=2.1e-05  Score=62.16  Aligned_cols=88  Identities=18%  Similarity=0.226  Sum_probs=56.1

Q ss_pred             CCCCCeEEEEcCccc-----ccCc--CCCCcEEEEeCCHHHHHHHHHHhccc------cceE-----EE-------eCCC
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPM--FPSTLILGLEIRVKVSDYVIDEWSLY------LKKM-----FF-------LYPD   69 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~--~p~~~v~GiDis~~~l~~a~~~~~~~------~d~v-----~~-------~f~d   69 (169)
                      +.++.+.||||.|+|     .+..  -+.....|||.-+++++++++++...      .+..     .+       -+++
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            456789999999999     2222  13455699999999999999987611      1110     01       1111


Q ss_pred             -CcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         70 -PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        70 -~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       ..+|..|--.  -.++..+++...|+|||.+++--
T Consensus       160 ~a~YDaIhvGA--aa~~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  160 QAPYDAIHVGA--AASELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             cCCcceEEEcc--CccccHHHHHHhhccCCeEEEee
Confidence             1123222111  13567888999999999998843

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.91  E-value=2.3e-05  Score=66.06  Aligned_cols=88  Identities=15%  Similarity=0.088  Sum_probs=62.6

Q ss_pred             CCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------cccceEEEeCCCCccccc---------
Q psy13086         18 KVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS----------LYLKKMFFLYPDPHFKRC---------   75 (169)
Q Consensus        18 ~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~----------~~~d~v~~~f~d~~f~~~---------   75 (169)
                      +..|||==||||   +....=+++++|+|++..|++-|+.|+.          ...|+-.+++++..++..         
T Consensus       198 G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrs  277 (347)
T COG1041         198 GELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRS  277 (347)
T ss_pred             CCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcc
Confidence            568999999999   3444557899999999999999998876          111333444555444421         


Q ss_pred             c-hhhh---cccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         76 K-YKWR---IINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        76 h-~~~~---~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      . .+..   -...++|+.++++||+||.+.|.++
T Consensus       278 t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         278 TKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            0 0000   0136799999999999999999987

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.87  E-value=1.8e-05  Score=63.87  Aligned_cols=39  Identities=15%  Similarity=0.174  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|||||||+|     ++.+.+  .++|+|+++.|++.+++++.
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~   72 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLS   72 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhC
Confidence            3678999999999     555543  59999999999999987754

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.86  E-value=8.2e-05  Score=51.51  Aligned_cols=85  Identities=15%  Similarity=0.261  Sum_probs=52.5

Q ss_pred             EEEEcCccc-c---cCcCCC-CcEEEEeCCHHHHHHHHHHh--ccc--cceEE-------EeCCC-Ccccccchhhhcc-
Q psy13086         21 FVDVGCGKL-Y---LPMFPS-TLILGLEIRVKVSDYVIDEW--SLY--LKKMF-------FLYPD-PHFKRCKYKWRII-   82 (169)
Q Consensus        21 iLDiGCG~G-l---a~~~p~-~~v~GiDis~~~l~~a~~~~--~~~--~d~v~-------~~f~d-~~f~~~h~~~~~~-   82 (169)
                      ++|+|||+| .   +...+. ..++|+|++..|+..++.+.  ...  ++.+.       +.+.+ ..++.. ...... 
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehh
Confidence            999999999 2   233232 48999999999998865443  100  11111       12222 134432 111111 


Q ss_pred             ---cHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         83 ---NQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        83 ---~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                         ....+.++.++|+|+|.+.+....
T Consensus       131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         131 LLPPAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             cCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence               268999999999999999987643

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.86  E-value=0.00014  Score=61.89  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=31.2

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++||++||+|     ++...  ..|+|||+|+.|++.|++|+.
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~  249 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIA  249 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHH
Confidence            46999999999     44443  489999999999999998765

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.80  E-value=0.00013  Score=62.60  Aligned_cols=78  Identities=14%  Similarity=0.201  Sum_probs=56.7

Q ss_pred             CeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCC
Q psy13086         19 VEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~   70 (169)
                      .+|||+-||+|     ++.+.++ ..|+++|+++.+++.+++|+.                      ..+|.|++   ||
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl---DP  122 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI---DP  122 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe---CC
Confidence            58999999999     4444333 589999999999999988764                      12343332   44


Q ss_pred             cccccchhhhcccHHHHHHHHHhccCCcEEEEE-eCChH
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI-TDVKD  108 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~-~d~~~  108 (169)
                       |..        ...++..+.+.+++||.++++ ||...
T Consensus       123 -fGs--------~~~fld~al~~~~~~glL~vTaTD~~~  152 (374)
T TIGR00308       123 -FGT--------PAPFVDSAIQASAERGLLLVTATDTSA  152 (374)
T ss_pred             -CCC--------cHHHHHHHHHhcccCCEEEEEecccHH
Confidence             321        147999999999999999997 55443

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.78  E-value=3.9e-05  Score=67.16  Aligned_cols=82  Identities=15%  Similarity=0.090  Sum_probs=46.3

Q ss_pred             CCeEEEEcCccc-cc--------CcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeCCC------C---------c
Q psy13086         18 KVEFVDVGCGKL-YL--------PMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLYPD------P---------H   71 (169)
Q Consensus        18 ~~~iLDiGCG~G-la--------~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f~d------~---------~   71 (169)
                      ...|||||||+| |+        ......+|++||.|+.++..+++++. ... +.|.+...|      |         +
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl  266 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL  266 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence            578999999999 22        12234699999999988876655432 111 122221111      0         0


Q ss_pred             ccccchhhhcccHHHHHHHHHhccCCcEEE
Q psy13086         72 FKRCKYKWRIINQNLLSEYAYVLSEGGIVY  101 (169)
Q Consensus        72 f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~  101 (169)
                      ....-  ..-..++.|....|.|||||.++
T Consensus       267 LGsfg--~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  267 LGSFG--DNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             -BTTB--TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             cCCcc--ccccCHHHHHHHHhhcCCCCEEe
Confidence            00000  00124678899999999999773

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.75  E-value=0.00013  Score=56.61  Aligned_cols=82  Identities=17%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHH---HHhccccceEEEeC-------CCCcccccchhhhcc-c
Q psy13086         20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVI---DEWSLYLKKMFFLY-------PDPHFKRCKYKWRII-N   83 (169)
Q Consensus        20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~---~~~~~~~d~v~~~f-------~d~~f~~~h~~~~~~-~   83 (169)
                      +++|||+|.|     +|-.+|+.+++-+|.+.+-+...+   ..+.  ++.+....       ....|+..- .|.+. .
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~--L~nv~v~~~R~E~~~~~~~fd~v~-aRAv~~l  127 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG--LSNVEVINGRAEEPEYRESFDVVT-ARAVAPL  127 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHHTTTTT-EEEEE-EESSSSH
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC--CCCEEEEEeeecccccCCCccEEE-eehhcCH
Confidence            7999999999     888899999999999987555443   3332  12121110       111222111 11111 2


Q ss_pred             HHHHHHHHHhccCCcEEEEEe
Q psy13086         84 QNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..+++-+...|++||.+++.-
T Consensus       128 ~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  128 DKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             HHHHHHHGGGEEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEEEc
Confidence            678999999999999998864

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG1499|consensus

Probab=97.73  E-value=4e-05  Score=64.49  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             CCCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         16 EKKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        16 ~~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      -++..|||||||||    .+.......|+|||.|.-+ +.|++-+
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv  102 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIV  102 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHH
Confidence            34688999999999    2333345699999987644 7776543

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.71  E-value=3e-05  Score=64.33  Aligned_cols=39  Identities=13%  Similarity=0.301  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|||||||+|     ++..  ...++|+|+++.|++.+++++.
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~   79 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQ   79 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHH
Confidence            3678999999999     3333  3589999999999999988754

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.70  E-value=4.1e-05  Score=55.93  Aligned_cols=38  Identities=11%  Similarity=0.093  Sum_probs=33.2

Q ss_pred             eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++||||||.|     ++...|..+++++|+++.+++.+++++.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~   43 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVK   43 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHH
Confidence            4899999999     6667788899999999999999988764

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.69  E-value=0.00048  Score=59.38  Aligned_cols=87  Identities=10%  Similarity=0.122  Sum_probs=62.8

Q ss_pred             CCeEEEEcCccc---ccCcCCCC-cEEEEeCCHHHHHHHHHHhc---------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL---YLPMFPST-LILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G---la~~~p~~-~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~~   66 (169)
                      +.+|||+=|=||   ++....++ ++++||+|..+++.|++|+.                           ..+|.|.+ 
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil-  296 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL-  296 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE-
Confidence            678999999999   44444555 99999999999999998754                           36776654 


Q ss_pred             CCCCcccccch-hhhc--ccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         67 YPDPHFKRCKY-KWRI--INQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        67 f~d~~f~~~h~-~~~~--~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                       .+|.|..... ..+.  ....++..+.++|+|||+++++|..
T Consensus       297 -DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         297 -DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             -CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence             3345543110 0010  1357899999999999999998753

>KOG2940|consensus

Probab=97.59  E-value=7.5e-05  Score=60.07  Aligned_cols=85  Identities=8%  Similarity=0.087  Sum_probs=60.1

Q ss_pred             CCeEEEEcCccc-ccCcC---CCCcEEEEeCCHHHHHHHHHHhc-------cccceEEEeCCCCcccc------cchhhh
Q psy13086         18 KVEFVDVGCGKL-YLPMF---PSTLILGLEIRVKVSDYVIDEWS-------LYLKKMFFLYPDPHFKR------CKYKWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~~~---p~~~v~GiDis~~~l~~a~~~~~-------~~~d~v~~~f~d~~f~~------~h~~~~   80 (169)
                      .+.++|||||-| +++..   .-.+++-+|.|..|++.++.--.       -..|.-++.|.+.++|.      .||...
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd  152 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND  152 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence            367999999999 43322   12489999999999999875311       23344455666666663      466554


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEe
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        .+.-+.+++..|||+|.|+-+.
T Consensus       153 --LPg~m~~ck~~lKPDg~Fiasm  174 (325)
T KOG2940|consen  153 --LPGSMIQCKLALKPDGLFIASM  174 (325)
T ss_pred             --CchHHHHHHHhcCCCccchhHH
Confidence              3778889999999999997553

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.00077  Score=57.38  Aligned_cols=111  Identities=13%  Similarity=0.199  Sum_probs=66.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCC--CCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEE
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP--STLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFF   65 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p--~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~   65 (169)
                      ++.+|||+.++.|     +|+..+  ...|+++|+|+.=++..++|+.                        ..+|.|.+
T Consensus       156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLl  235 (355)
T COG0144         156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILL  235 (355)
T ss_pred             CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEE
Confidence            4689999999999     665544  3567999999987776665543                        12555543


Q ss_pred             eCC---------CCcccccchhh-----hcccHHHHHHHHHhccCCcEEEEEe--CChHHHHH-HHHHHhcCCCceecC
Q psy13086         66 LYP---------DPHFKRCKYKW-----RIINQNLLSEYAYVLSEGGIVYTIT--DVKDLHDW-IVSHFTEHPLFVECD  127 (169)
Q Consensus        66 ~f~---------d~~f~~~h~~~-----~~~~~~~l~~~~rvLkpGG~l~i~~--d~~~~~~~-~~~~~~~~~~f~~~~  127 (169)
                      .-|         +|..+......     .-.+.++|+...++|||||.|+-+|  -.+...+. ....+.+++.|+..+
T Consensus       236 DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~  314 (355)
T COG0144         236 DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEP  314 (355)
T ss_pred             CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeec
Confidence            211         11100000000     0125789999999999999998875  22222222 223445677776654

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.55  E-value=0.00028  Score=56.07  Aligned_cols=126  Identities=14%  Similarity=0.109  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhcc---ccceEE---E-eC-CCC-cccc-------
Q psy13086         17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSL---YLKKMF---F-LY-PDP-HFKR-------   74 (169)
Q Consensus        17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~---~~d~v~---~-~f-~d~-~f~~-------   74 (169)
                      +..+.||.|+|-|      |...+  ..|.-||+.++.++.|++.+..   .+-.++   + .| |.+ ..|.       
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l  132 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL  132 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred             CcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence            3678999999999      45554  5899999999999999976541   111111   0 01 111 1111       


Q ss_pred             cchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHc
Q psy13086         75 CKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRN  154 (169)
Q Consensus        75 ~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~  154 (169)
                      -|.. ....-++|+.+...|+|+|.+++..+...           + .+......+.       .-.++...|.+.+.+.
T Consensus       133 ghLT-D~dlv~fL~RCk~~L~~~G~IvvKEN~~~-----------~-~~~~~D~~Ds-------SvTRs~~~~~~lF~~A  192 (218)
T PF05891_consen  133 GHLT-DEDLVAFLKRCKQALKPNGVIVVKENVSS-----------S-GFDEFDEEDS-------SVTRSDEHFRELFKQA  192 (218)
T ss_dssp             GGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEES-----------S-SEEEEETTTT-------EEEEEHHHHHHHHHHC
T ss_pred             ccCC-HHHHHHHHHHHHHhCcCCcEEEEEecCCC-----------C-CCcccCCccC-------eeecCHHHHHHHHHHc
Confidence            1111 11125799999999999999999743221           1 1211111110       0124456677777777


Q ss_pred             CCCeEEEEEE
Q psy13086        155 KGEKFCAVFR  164 (169)
Q Consensus       155 g~~i~~~~~~  164 (169)
                      |..+.....+
T Consensus       193 Gl~~v~~~~Q  202 (218)
T PF05891_consen  193 GLRLVKEEKQ  202 (218)
T ss_dssp             T-EEEEEEE-
T ss_pred             CCEEEEeccc
Confidence            8777655444

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.55  E-value=0.00016  Score=60.13  Aligned_cols=39  Identities=13%  Similarity=0.068  Sum_probs=33.5

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~   56 (169)
                      +..+||.+||+|     ++...| +..|+|+|.++.|++.|++++
T Consensus        20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L   64 (296)
T PRK00050         20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL   64 (296)
T ss_pred             CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhh
Confidence            579999999999     666665 689999999999999998654

>KOG1269|consensus

Probab=97.51  E-value=9.4e-05  Score=63.13  Aligned_cols=87  Identities=17%  Similarity=0.217  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHH-----hcc--cc---ceEEEeCCCCcccccchhhhc-
Q psy13086         17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDE-----WSL--YL---KKMFFLYPDPHFKRCKYKWRI-   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~-----~~~--~~---d~v~~~f~d~~f~~~h~~~~~-   81 (169)
                      ....++|+|||-|    +-..+..+.++|+|.++--+..+...     +..  .+   |....+|+|..|+........ 
T Consensus       110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~  189 (364)
T KOG1269|consen  110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC  189 (364)
T ss_pred             ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence            3457999999999    45567788999999999766655432     111  11   111246777777643211111 


Q ss_pred             ---ccHHHHHHHHHhccCCcEEEEE
Q psy13086         82 ---INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        82 ---~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                         ....+++|++|++||||.++..
T Consensus       190 ~~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  190 HAPDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             cCCcHHHHHHHHhcccCCCceEEeH
Confidence               1267999999999999999874

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.51  E-value=0.00089  Score=51.37  Aligned_cols=81  Identities=14%  Similarity=0.179  Sum_probs=56.8

Q ss_pred             CCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCC
Q psy13086         18 KVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        18 ~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~   70 (169)
                      +.-|||+|.|||      |+...++..++.||.|++-+....+..+                     ..+|.+..-.|--
T Consensus        49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll  128 (194)
T COG3963          49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLL  128 (194)
T ss_pred             CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccc
Confidence            457999999999      7777788899999999998888776543                     2334333222111


Q ss_pred             cccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .|-   .++   .-+.++++...|.+||.++--+
T Consensus       129 ~~P---~~~---~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963         129 NFP---MHR---RIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             cCc---HHH---HHHHHHHHHHhcCCCCeEEEEE
Confidence            111   111   2479999999999999998755

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.48  E-value=0.00019  Score=56.63  Aligned_cols=38  Identities=21%  Similarity=0.203  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID   54 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~   54 (169)
                      +....+|||||.|     .|...+-...+|||+.+...+.|+.
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~   84 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEE   84 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHH
Confidence            4789999999999     3333333459999999987777653

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.47  E-value=9.9e-05  Score=59.40  Aligned_cols=83  Identities=12%  Similarity=0.155  Sum_probs=56.7

Q ss_pred             CCeEEEEcCccc---ccCcCCCC-cEEEEeCCHHHHHHHHHH----------hc---------------cccceEEEeCC
Q psy13086         18 KVEFVDVGCGKL---YLPMFPST-LILGLEIRVKVSDYVIDE----------WS---------------LYLKKMFFLYP   68 (169)
Q Consensus        18 ~~~iLDiGCG~G---la~~~p~~-~v~GiDis~~~l~~a~~~----------~~---------------~~~d~v~~~f~   68 (169)
                      ..+|||...|-|   +...-.++ .|+-||.++++++.|.-|          +.               .++|.|.  +.
T Consensus       135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi--HD  212 (287)
T COG2521         135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII--HD  212 (287)
T ss_pred             CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe--eC
Confidence            578999999999   33333455 999999999999988532          11               3344331  22


Q ss_pred             CCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         69 DPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        69 d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      .|-|...   -++.+.+|.+|++|+|||||.++.-+-
T Consensus       213 PPRfS~A---geLYseefY~El~RiLkrgGrlFHYvG  246 (287)
T COG2521         213 PPRFSLA---GELYSEEFYRELYRILKRGGRLFHYVG  246 (287)
T ss_pred             CCccchh---hhHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence            2323211   244568899999999999999988653

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.42  E-value=0.00049  Score=56.98  Aligned_cols=88  Identities=11%  Similarity=0.147  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCccc---c-cCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         17 KKVEFVDVGCGKL---Y-LPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        17 ~~~~iLDiGCG~G---l-a~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ++.+|||+=|=||   + |..-...+|+.||.|..+++.|++|+.                          ..+|.|.+ 
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl-  201 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL-  201 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE-
Confidence            3679999999999   3 334333489999999999999998754                          34555543 


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                       ..|.|......-.--..+++..+.++|+|||.|++++..
T Consensus       202 -DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs  240 (286)
T PF10672_consen  202 -DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS  240 (286)
T ss_dssp             ---SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred             -CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence             234554321110001256899999999999999888754

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.39  E-value=0.00021  Score=52.74  Aligned_cols=40  Identities=20%  Similarity=0.291  Sum_probs=32.8

Q ss_pred             CCeEEEEcCccc-----ccC----cCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLP----MFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~----~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ...|+|+|||.|     ++.    ..++.+|+|||.++.+++.|+++..
T Consensus        26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~   74 (141)
T PF13679_consen   26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ   74 (141)
T ss_pred             CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence            578999999999     444    1377899999999999998876644

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.36  E-value=0.00018  Score=54.99  Aligned_cols=30  Identities=13%  Similarity=0.232  Sum_probs=23.7

Q ss_pred             CCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVK   47 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~   47 (169)
                      ..++||+||++|     +..+. +...|+|||+.+.
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            589999999999     44444 5689999999875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1500|consensus

Probab=97.33  E-value=0.00044  Score=58.45  Aligned_cols=38  Identities=16%  Similarity=0.241  Sum_probs=29.2

Q ss_pred             CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      +..|||||||+|    .|..-....|.+||.| +|.++|++-+
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv  219 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLV  219 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHH
Confidence            678999999999    3333345699999966 6888888643

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.31  E-value=0.0013  Score=54.44  Aligned_cols=104  Identities=17%  Similarity=0.113  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCC--CcEEEEeCCHHHHHHHHHHhc-cccceE-E-----------EeCCCCcccc--
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPS--TLILGLEIRVKVSDYVIDEWS-LYLKKM-F-----------FLYPDPHFKR--   74 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~--~~v~GiDis~~~l~~a~~~~~-~~~d~v-~-----------~~f~d~~f~~--   74 (169)
                      +.-+||||.||+|     .....|.  .++.-.|.|+..++..++-+. ..++.+ .           +.--+|.++.  
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            3678999999999     3334454  599999999999998876554 111111 0           0000111110  


Q ss_pred             cchhh-----hcccHHHHHHHHHhccCCcEEEEEe-CChHHHHHHHHHHhcC
Q psy13086         75 CKYKW-----RIINQNLLSEYAYVLSEGGIVYTIT-DVKDLHDWIVSHFTEH  120 (169)
Q Consensus        75 ~h~~~-----~~~~~~~l~~~~rvLkpGG~l~i~~-d~~~~~~~~~~~~~~~  120 (169)
                      ..-..     +-.....++-+++.|.|||.++... ++..-.+.....+..|
T Consensus       215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsH  266 (311)
T PF12147_consen  215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSH  266 (311)
T ss_pred             EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcc
Confidence            00000     0012457888999999999998754 2222233233444444

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.29  E-value=0.0036  Score=54.68  Aligned_cols=102  Identities=13%  Similarity=0.071  Sum_probs=66.4

Q ss_pred             CCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeC------CCC-----ccccc--chhh
Q psy13086         17 KKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLY------PDP-----HFKRC--KYKW   79 (169)
Q Consensus        17 ~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f------~d~-----~f~~~--h~~~   79 (169)
                      ++.++||+=||.|   +.......+|+|+|+++.+++.|++|++ ++++.+++.-      ...     .|+..  .--|
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR  372 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR  372 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCC
Confidence            4678999999999   3333345799999999999999999887 5555443211      000     11100  0000


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE  119 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~  119 (169)
                      .=..+.+++.+ ..++|-..+|++++..+++.........
T Consensus       373 ~G~~~~~lk~l-~~~~p~~IvYVSCNP~TlaRDl~~L~~~  411 (432)
T COG2265         373 AGADREVLKQL-AKLKPKRIVYVSCNPATLARDLAILAST  411 (432)
T ss_pred             CCCCHHHHHHH-HhcCCCcEEEEeCCHHHHHHHHHHHHhC
Confidence            00124677777 5678999999999888888866554443

>KOG1709|consensus

Probab=97.28  E-value=0.00061  Score=54.31  Aligned_cols=79  Identities=14%  Similarity=0.084  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEe-C
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFL-Y   67 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~-f   67 (169)
                      .|+.+||.||.|-|     +.++.|. .-.-||..+.++++.++...                      +.+|.|... |
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy  178 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY  178 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence            45789999999999     3344455 44459999999998875321                      445555431 1


Q ss_pred             CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..-+-+         ...+.+.+.|+|||+|.|.+..
T Consensus       179 ~e~yEd---------l~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  179 SELYED---------LRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             hhHHHH---------HHHHHHHHhhhcCCCceEEEec
Confidence            111101         1357788999999999998753

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.26  E-value=0.002  Score=55.12  Aligned_cols=85  Identities=13%  Similarity=0.169  Sum_probs=66.7

Q ss_pred             CCeEEEEcCccccc----CcCCC-CcEEEEeCCHHHHHHHHHHh-----c------------------------cccceE
Q psy13086         18 KVEFVDVGCGKLYL----PMFPS-TLILGLEIRVKVSDYVIDEW-----S------------------------LYLKKM   63 (169)
Q Consensus        18 ~~~iLDiGCG~Gla----~~~p~-~~v~GiDis~~~l~~a~~~~-----~------------------------~~~d~v   63 (169)
                      ..++|=+|-|.|+|    .++|+ .+++-||++++|++.++.+.     .                        ..+|.+
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            46899999999933    35785 59999999999999997421     0                        567888


Q ss_pred             EEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         64 FFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        64 ~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      .+.+|||.-..   .-|+.+.+|...+.|.|+++|.++++..
T Consensus       370 IVDl~DP~tps---~~rlYS~eFY~ll~~~l~e~Gl~VvQag  408 (508)
T COG4262         370 IVDLPDPSTPS---IGRLYSVEFYRLLSRHLAETGLMVVQAG  408 (508)
T ss_pred             EEeCCCCCCcc---hhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence            88899985432   2345567899999999999999999853

>KOG2915|consensus

Probab=97.25  E-value=0.002  Score=52.89  Aligned_cols=91  Identities=13%  Similarity=0.233  Sum_probs=62.9

Q ss_pred             CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEE
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFF   65 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~   65 (169)
                      .++.+|||-|.|+|     +++.. |...++-.|+.+.-.+.|++..+                        ..+|+|++
T Consensus       104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL  183 (314)
T KOG2915|consen  104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFL  183 (314)
T ss_pred             CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEEE
Confidence            34789999999999     44443 77899999999988888876432                        56889999


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCc-EEEEEeCChHHHHHHHHHHhc
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGG-IVYTITDVKDLHDWIVSHFTE  119 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG-~l~i~~d~~~~~~~~~~~~~~  119 (169)
                      ..|.||-             ++-.++.+||.+| +|+--++.-+..+...+.+..
T Consensus       184 DlPaPw~-------------AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~  225 (314)
T KOG2915|consen  184 DLPAPWE-------------AIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRS  225 (314)
T ss_pred             cCCChhh-------------hhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHh
Confidence            9999984             3444556788776 444445544444444444444

>KOG2187|consensus

Probab=97.19  E-value=0.0015  Score=57.72  Aligned_cols=96  Identities=11%  Similarity=0.114  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCC----------CCcccccc-----
Q psy13086         16 EKKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYP----------DPHFKRCK-----   76 (169)
Q Consensus        16 ~~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~----------d~~f~~~h-----   76 (169)
                      ..+..+||+-||||   ++..-+-..|+||++++.+++.|+.+.. +.+++......          .+.++..+     
T Consensus       382 ~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~ii  461 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAII  461 (534)
T ss_pred             CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEEE
Confidence            34688999999999   6655566799999999999999998754 22222211100          01111100     


Q ss_pred             -hhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHH
Q psy13086         77 -YKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHD  111 (169)
Q Consensus        77 -~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~  111 (169)
                       -.|.=.+..+++.+.+.-++-=.+|+++.....+.
T Consensus       462 DPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar  497 (534)
T KOG2187|consen  462 DPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAAR  497 (534)
T ss_pred             CCCcccccHHHHHHHHhccCccceEEEEcCHHHhhh
Confidence             00000235677777666667777887765554333

>KOG4589|consensus

Probab=97.17  E-value=0.009  Score=46.80  Aligned_cols=89  Identities=11%  Similarity=0.068  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcCccc----cc--CcCCCCcEEEEeCCH------------------HHHHHHHHHhc-cccceEEEe-CCC
Q psy13086         16 EKKVEFVDVGCGKL----YL--PMFPSTLILGLEIRV------------------KVSDYVIDEWS-LYLKKMFFL-YPD   69 (169)
Q Consensus        16 ~~~~~iLDiGCG~G----la--~~~p~~~v~GiDis~------------------~~l~~a~~~~~-~~~d~v~~~-f~d   69 (169)
                      .|..+|||+||..|    .|  +.+|+..++|||+-.                  .......+.++ ..+|.|... .|+
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapn  147 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPN  147 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCC
Confidence            34789999999999    22  346888999999743                  12222223333 566666432 333


Q ss_pred             Cccc-ccchhhhc-ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         70 PHFK-RCKYKWRI-INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        70 ~~f~-~~h~~~~~-~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +.=. .+.|-+.+ ...+++--....++|+|.|++..
T Consensus       148 aTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~  184 (232)
T KOG4589|consen  148 ATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL  184 (232)
T ss_pred             CcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence            3211 11111111 12344555557789999999875

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.17  E-value=0.00079  Score=54.91  Aligned_cols=39  Identities=13%  Similarity=0.018  Sum_probs=24.9

Q ss_pred             CCCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086         16 EKKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVID   54 (169)
Q Consensus        16 ~~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~   54 (169)
                      -++.++||||||.=    ++..---.+++..|.++..++..++
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~k   97 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEK   97 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHH
Confidence            34678999999998    2222112479999999987776543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.15  E-value=0.0035  Score=51.47  Aligned_cols=37  Identities=14%  Similarity=0.157  Sum_probs=29.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVID   54 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~   54 (169)
                      ..+|||+|||+|     ....++. .+++.+|.|+.|++.++.
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~   76 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR   76 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH
Confidence            578999999999     3344553 489999999999998864

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG1663|consensus

Probab=97.14  E-value=0.0021  Score=51.48  Aligned_cols=74  Identities=15%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc----------------------------cccceE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS----------------------------LYLKKM   63 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~----------------------------~~~d~v   63 (169)
                      ..+.||||.=||     .|...| +..|+++|+++...+.+.+-++                            +++|.+
T Consensus        74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa  153 (237)
T KOG1663|consen   74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA  153 (237)
T ss_pred             CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence            578999998888     555555 5799999999988877643211                            344444


Q ss_pred             EEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086         64 FFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        64 ~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                      |+   |      |+|++.  ....+++.++||+||.+++
T Consensus       154 Fv---D------adK~nY--~~y~e~~l~Llr~GGvi~~  181 (237)
T KOG1663|consen  154 FV---D------ADKDNY--SNYYERLLRLLRVGGVIVV  181 (237)
T ss_pred             EE---c------cchHHH--HHHHHHHHhhcccccEEEE
Confidence            33   2      233332  3788999999999999987

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.08  E-value=0.004  Score=51.35  Aligned_cols=108  Identities=15%  Similarity=0.183  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLY   67 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f   67 (169)
                      ++..|||+.+|.|     +++... ...+++.|++..-+...++++.                       ..+|.|.+.-
T Consensus        85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa  164 (283)
T PF01189_consen   85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA  164 (283)
T ss_dssp             TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred             ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence            3678999999999     665554 6799999999987777765432                       2367666532


Q ss_pred             CC---------Cccccc---chhhhc--ccHHHHHHHHHhc----cCCcEEEEEe------CChHHHHHHHHHHhcCCCc
Q psy13086         68 PD---------PHFKRC---KYKWRI--INQNLLSEYAYVL----SEGGIVYTIT------DVKDLHDWIVSHFTEHPLF  123 (169)
Q Consensus        68 ~d---------~~f~~~---h~~~~~--~~~~~l~~~~rvL----kpGG~l~i~~------d~~~~~~~~~~~~~~~~~f  123 (169)
                      |=         |.-+..   .....+  .+.++|+...+.+    ||||+++-+|      .++...++   .+..|+.|
T Consensus       165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~---fl~~~~~~  241 (283)
T PF01189_consen  165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEK---FLKRHPDF  241 (283)
T ss_dssp             SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHH---HHHHSTSE
T ss_pred             CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHH---HHHhCCCc
Confidence            21         110000   000001  2477999999999    9999998886      12333333   34567777


Q ss_pred             eecC
Q psy13086        124 VECD  127 (169)
Q Consensus       124 ~~~~  127 (169)
                      +..+
T Consensus       242 ~l~~  245 (283)
T PF01189_consen  242 ELVP  245 (283)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6643

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.07  E-value=0.00085  Score=59.70  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=30.4

Q ss_pred             CCeEEEEcCccc-----ccCcCC--------CCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP--------STLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p--------~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ..+|||.|||+|     ++...+        ..+++|+|+++.++..|+.++.
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~   84 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG   84 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence            568999999999     222221        2589999999999999887643

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.07  E-value=0.0012  Score=51.17  Aligned_cols=82  Identities=17%  Similarity=0.225  Sum_probs=51.2

Q ss_pred             CCeEEEEcCccc-ccC--c-CCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEeC
Q psy13086         18 KVEFVDVGCGKL-YLP--M-FPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFLY   67 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~--~-~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~f   67 (169)
                      +.++||+=|||| ++-  . .....++.||.+...++.+++|+.                          ..+|   +.|
T Consensus        43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fD---iIf  119 (183)
T PF03602_consen   43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFD---IIF  119 (183)
T ss_dssp             T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EE---EEE
T ss_pred             CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCce---EEE
Confidence            689999999999 221  1 123589999999999999887754                          2233   445


Q ss_pred             CCCcccccchhhhcccHHHHHHHH--HhccCCcEEEEEeCCh
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYA--YVLSEGGIVYTITDVK  107 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~--rvLkpGG~l~i~~d~~  107 (169)
                      -||-+.....     ...+++.+.  .+|+++|.+++.++..
T Consensus       120 lDPPY~~~~~-----~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  120 LDPPYAKGLY-----YEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             E--STTSCHH-----HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             ECCCcccchH-----HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            5554433211     145677766  7999999999876433

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.95  E-value=0.0014  Score=54.27  Aligned_cols=89  Identities=16%  Similarity=0.102  Sum_probs=52.4

Q ss_pred             CCeEEEEcCccc--ccC--c--------CCCCcEEEEeCCHHHHHHHHHHhc-------------------------ccc
Q psy13086         18 KVEFVDVGCGKL--YLP--M--------FPSTLILGLEIRVKVSDYVIDEWS-------------------------LYL   60 (169)
Q Consensus        18 ~~~iLDiGCG~G--la~--~--------~p~~~v~GiDis~~~l~~a~~~~~-------------------------~~~   60 (169)
                      +.+|||-.||+|  |..  .        .+..+++|+|+++.++..|+-++.                         ..+
T Consensus        47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  126 (311)
T PF02384_consen   47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKF  126 (311)
T ss_dssp             TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--E
T ss_pred             cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            568999999999  221  1        367799999999999988875432                         235


Q ss_pred             ceEEEeCCCCcc--ccc------chhh-----hcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         61 KKMFFLYPDPHF--KRC------KYKW-----RIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        61 d~v~~~f~d~~f--~~~------h~~~-----~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      |.|..+-|-...  ...      .+..     .-..-.++..+.+.||+||++.+..+.
T Consensus       127 D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~  185 (311)
T PF02384_consen  127 DVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN  185 (311)
T ss_dssp             EEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred             ccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence            555433221110  000      0000     001135889999999999998887643

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.85  E-value=0.0012  Score=53.53  Aligned_cols=46  Identities=15%  Similarity=0.468  Sum_probs=32.8

Q ss_pred             CccCCCCCCCCCCCCCeEEEEcCccc-c----cCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086          4 SPLYPELKDPTCEKKVEFVDVGCGKL-Y----LPMFPSTLILGLEIRVKVSDYVID   54 (169)
Q Consensus         4 ~~~f~~~~~~~~~~~~~iLDiGCG~G-l----a~~~p~~~v~GiDis~~~l~~a~~   54 (169)
                      ..+|+...     ...+|+|||||.= +    ....|++.++|+||+..+++....
T Consensus        97 ~~if~~~~-----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~  147 (251)
T PF07091_consen   97 DEIFGRIP-----PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNA  147 (251)
T ss_dssp             HHHCCCS--------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHH
T ss_pred             HHHHhcCC-----CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHH
Confidence            45677753     2689999999998 2    334567899999999999998764

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.79  E-value=0.011  Score=54.67  Aligned_cols=20  Identities=15%  Similarity=0.107  Sum_probs=18.4

Q ss_pred             cEEEEeCCHHHHHHHHHHhc
Q psy13086         38 LILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        38 ~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++|+|+++.|++.|++|+.
T Consensus       258 ~i~G~Did~~av~~A~~N~~  277 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNAR  277 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHH
Confidence            69999999999999998865

>KOG3178|consensus

Probab=96.76  E-value=0.012  Score=49.86  Aligned_cols=127  Identities=13%  Similarity=0.048  Sum_probs=74.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh-ccccceEEE-eCC-CCcccc------cchhhhccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW-SLYLKKMFF-LYP-DPHFKR------CKYKWRIIN   83 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~-~~~~d~v~~-~f~-d~~f~~------~h~~~~~~~   83 (169)
                      -...+|+|-|.|     +...||.  +-|++....-+..++..+ ++ +..+.- -|- -|.-+.      .|+-..-..
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~~g-V~~v~gdmfq~~P~~daI~mkWiLhdwtDedc  254 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLAPG-VEHVAGDMFQDTPKGDAIWMKWILHDWTDEDC  254 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhcCC-cceecccccccCCCcCeEEEEeecccCChHHH
Confidence            578999999999     3347775  778888887666666655 31 221110 011 111110      111111123


Q ss_pred             HHHHHHHHHhccCCcEEEEEeCC-hH--H----------HHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHH
Q psy13086         84 QNLLSEYAYVLSEGGIVYTITDV-KD--L----------HDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQK  150 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~d~-~~--~----------~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~  150 (169)
                      -++|+.+...|+|||.+++...+ +.  -          ...+...+....                 -...+.++|+.-
T Consensus       255 vkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~-----------------Gkert~~e~q~l  317 (342)
T KOG3178|consen  255 VKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSG-----------------GKERTLKEFQAL  317 (342)
T ss_pred             HHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcc-----------------ceeccHHHHHhc
Confidence            57999999999999999997531 11  0          001111111111                 133668889999


Q ss_pred             HHHcCCCeEEEEEE
Q psy13086        151 VTRNKGEKFCAVFR  164 (169)
Q Consensus       151 ~~~~g~~i~~~~~~  164 (169)
                      +.++|.+++....+
T Consensus       318 ~~~~gF~~~~~~~~  331 (342)
T KOG3178|consen  318 LPEEGFPVCMVALT  331 (342)
T ss_pred             chhhcCceeEEEec
Confidence            99999999877653

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.61  E-value=0.004  Score=52.91  Aligned_cols=43  Identities=14%  Similarity=0.180  Sum_probs=31.8

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceE
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKM   63 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v   63 (169)
                      ..+||+=||.|     +|...  .+|+|||+++.+++.|++|+. +.++.+
T Consensus       198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~  246 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNV  246 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SE
T ss_pred             CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcc
Confidence            37999999999     55554  689999999999999998876 444444

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.58  E-value=0.016  Score=49.16  Aligned_cols=75  Identities=13%  Similarity=0.187  Sum_probs=55.1

Q ss_pred             CCeEEEEcCccc---cc-CcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCCc
Q psy13086         18 KVEFVDVGCGKL---YL-PMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDPH   71 (169)
Q Consensus        18 ~~~iLDiGCG~G---la-~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~~   71 (169)
                      +.+|||.=+|-|   +. ..+....|+++|+++.+++++++|+.                      ..+|.|.|.+|.. 
T Consensus       189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~~-  267 (341)
T COG2520         189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPKS-  267 (341)
T ss_pred             CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCCc-
Confidence            688999999999   22 23333459999999999999998876                      2244444444321 


Q ss_pred             ccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         72 FKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        72 f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                                 ..+++....+.|++||.+.+-+
T Consensus       268 -----------a~~fl~~A~~~~k~~g~iHyy~  289 (341)
T COG2520         268 -----------AHEFLPLALELLKDGGIIHYYE  289 (341)
T ss_pred             -----------chhhHHHHHHHhhcCcEEEEEe
Confidence                       2568888999999999998864

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.46  E-value=0.0092  Score=47.72  Aligned_cols=100  Identities=12%  Similarity=0.142  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHH----HHHHHHHHhc------------------cccceEEEeC
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVK----VSDYVIDEWS------------------LYLKKMFFLY   67 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~----~l~~a~~~~~------------------~~~d~v~~~f   67 (169)
                      .++.+||-+|..+|     ++..- ++..|.+||.|+.    ++..|++|-.                  ..+|.++...
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV  151 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDV  151 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecC
Confidence            34789999999999     44433 5789999999994    5666766521                  4455444332


Q ss_pred             CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe---------CChHHHHHHHHHHhcCCCceec
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT---------DVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~---------d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      +-|  +.        ..-++.++...||+||.++++.         +.+..+....+.+.+. .|+..
T Consensus       152 aQp--~Q--------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~-~~~~~  208 (229)
T PF01269_consen  152 AQP--DQ--------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEE-GFKPL  208 (229)
T ss_dssp             SST--TH--------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCT-TCEEE
T ss_pred             CCh--HH--------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHc-CCChh
Confidence            222  10        1347778888999999998862         2233444445555543 35543

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.46  E-value=0.0042  Score=50.75  Aligned_cols=39  Identities=13%  Similarity=0.292  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++..|||||+|.|     |+++  ...|++||+++.+++..+++..
T Consensus        30 ~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~   73 (259)
T COG0030          30 PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA   73 (259)
T ss_pred             CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc
Confidence            4688999999999     4444  3579999999999999988753

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.45  E-value=0.0062  Score=48.45  Aligned_cols=81  Identities=19%  Similarity=0.228  Sum_probs=49.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHH---HHHhccccceEEEe------CC-CCc-ccccchhhhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYV---IDEWSLYLKKMFFL------YP-DPH-FKRCKYKWRI   81 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a---~~~~~~~~d~v~~~------f~-d~~-f~~~h~~~~~   81 (169)
                      ..+++|||+|.|     +|-.+|+.+|+-+|-..+=+...   .+.+.  ++.+.+.      |. ++. +|... .|.+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~--L~nv~i~~~RaE~~~~~~~~~D~vt-sRAv  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG--LENVEIVHGRAEEFGQEKKQYDVVT-SRAV  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC--CCCeEEehhhHhhcccccccCcEEE-eehc
Confidence            478999999999     88889999999999888754444   33322  1111111      10 011 22111 1111


Q ss_pred             c-cHHHHHHHHHhccCCcEEE
Q psy13086         82 I-NQNLLSEYAYVLSEGGIVY  101 (169)
Q Consensus        82 ~-~~~~l~~~~rvLkpGG~l~  101 (169)
                      - ...+++-+...||+||.+.
T Consensus       145 a~L~~l~e~~~pllk~~g~~~  165 (215)
T COG0357         145 ASLNVLLELCLPLLKVGGGFL  165 (215)
T ss_pred             cchHHHHHHHHHhcccCCcch
Confidence            1 2567778889999999874

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.41  E-value=0.0039  Score=47.57  Aligned_cols=36  Identities=14%  Similarity=0.276  Sum_probs=28.4

Q ss_pred             eEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         20 EFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        20 ~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .|||+.||.|     +|+.+  .+|++||+++..++.|+.|+.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~   42 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAE   42 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHH
T ss_pred             EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHH
Confidence            6999999999     66665  579999999999999987754

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.30  E-value=0.0023  Score=45.56  Aligned_cols=35  Identities=34%  Similarity=0.594  Sum_probs=23.1

Q ss_pred             CCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCC
Q psy13086          3 WSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIR   45 (169)
Q Consensus         3 ~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis   45 (169)
                      |.+.++...      ....+|||||+|     |..+  +..=.|+|+.
T Consensus        50 W~~~~~~~~------~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R   89 (112)
T PF07757_consen   50 WRDMYGEQK------FQGFVDLGCGNGLLVYILNSE--GYPGWGIDAR   89 (112)
T ss_pred             HhcccCCCC------CCceEEccCCchHHHHHHHhC--CCCccccccc
Confidence            666666632      567999999999     2222  3345788865

; GO: 0008168 methyltransferase activity

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.30  E-value=0.0023  Score=53.27  Aligned_cols=40  Identities=18%  Similarity=0.137  Sum_probs=28.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ..++||||||.-     |+.+..+++++|.||++..++.|++++.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~  147 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVE  147 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHH
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHH
Confidence            568999999999     4444448999999999999999998765

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG0820|consensus

Probab=96.29  E-value=0.0052  Score=50.60  Aligned_cols=41  Identities=12%  Similarity=0.113  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCccc-ccC--cCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-YLP--MFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-la~--~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +...|||||.||| |..  ....++|+++|+++.|+....++..
T Consensus        58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~  101 (315)
T KOG0820|consen   58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQ  101 (315)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhc
Confidence            3578999999999 333  3356899999999999999988765

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.23  E-value=0.038  Score=43.66  Aligned_cols=85  Identities=13%  Similarity=0.078  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHH----HHH---------HHHHhc-----cccceEEEeCCCCcc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKV----SDY---------VIDEWS-----LYLKKMFFLYPDPHF   72 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~----l~~---------a~~~~~-----~~~d~v~~~f~d~~f   72 (169)
                      +...|+|+|+-.|     +++.. +...|+|||+-+--    +..         +.+++.     ..+|.|..   |..+
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s---D~ap  121 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS---DMAP  121 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEe---cCCC
Confidence            3689999999999     33333 34469999998721    111         112222     23455542   3222


Q ss_pred             cc-----cchhhhc-ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         73 KR-----CKYKWRI-INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        73 ~~-----~h~~~~~-~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +.     .++.+.+ ....+++-...+|+|||.|.+..
T Consensus       122 ~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~  159 (205)
T COG0293         122 NTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV  159 (205)
T ss_pred             CcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence            21     1222221 23557777788999999998875

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=95.95  E-value=0.0093  Score=41.32  Aligned_cols=72  Identities=10%  Similarity=0.039  Sum_probs=24.7

Q ss_pred             EEEcCccc-----ccCcCCC---CcEEEEeCCHH---HHHHHHH-Hhc-------------------cccceEEEeCCCC
Q psy13086         22 VDVGCGKL-----YLPMFPS---TLILGLEIRVK---VSDYVID-EWS-------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        22 LDiGCG~G-----la~~~p~---~~v~GiDis~~---~l~~a~~-~~~-------------------~~~d~v~~~f~d~   70 (169)
                      ||||+..|     +++..+.   .+++++|..+.   .-+.+++ .+.                   ..+|.+++     
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i-----   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI-----   75 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE-----
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE-----
Confidence            79998888     4444433   37999999994   3333332 111                   22222222     


Q ss_pred             cccccchhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                        |..|....  ....++.+.+.|+|||.+++
T Consensus        76 --Dg~H~~~~--~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   76 --DGDHSYEA--VLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             --ES---HHH--HHHHHHHHGGGEEEEEEEEE
T ss_pred             --CCCCCHHH--HHHHHHHHHHHcCCCeEEEE
Confidence              12222111  24578888899999998876

>KOG3987|consensus

Probab=95.86  E-value=0.0041  Score=49.47  Aligned_cols=77  Identities=21%  Similarity=0.278  Sum_probs=50.6

Q ss_pred             CCeEEEEcCccc-ccCcC-CC-CcEEEEeCCHHHHHHHHHHh-c-----------cccceEE-EeCCCCcccccchhhhc
Q psy13086         18 KVEFVDVGCGKL-YLPMF-PS-TLILGLEIRVKVSDYVIDEW-S-----------LYLKKMF-FLYPDPHFKRCKYKWRI   81 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~~~-p~-~~v~GiDis~~~l~~a~~~~-~-----------~~~d~v~-~~f~d~~f~~~h~~~~~   81 (169)
                      +.++||+|.|.| +..+. |. ..|.+.|.|..|..+.+++- .           -.+|.|. ++.-|-.+         
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~---------  183 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCF---------  183 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhc---------
Confidence            578999999999 44433 22 36899999999999887531 1           1233322 11111111         


Q ss_pred             ccHHHHHHHHHhccC-CcEEEEE
Q psy13086         82 INQNLLSEYAYVLSE-GGIVYTI  103 (169)
Q Consensus        82 ~~~~~l~~~~rvLkp-GG~l~i~  103 (169)
                      ..-.+++.++.+|+| .|+++++
T Consensus       184 ~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  184 DPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             ChHHHHHHHHHHhccCCCcEEEE
Confidence            124799999999999 7988775

>KOG2352|consensus

Probab=95.86  E-value=0.021  Score=50.32  Aligned_cols=86  Identities=19%  Similarity=0.177  Sum_probs=57.4

Q ss_pred             eEEEEcCccc-ccC---cCCCCcEEEEeCCHHHHHHHHHHh-c-------cccceEEEeCCCCcccccchhh--------
Q psy13086         20 EFVDVGCGKL-YLP---MFPSTLILGLEIRVKVSDYVIDEW-S-------LYLKKMFFLYPDPHFKRCKYKW--------   79 (169)
Q Consensus        20 ~iLDiGCG~G-la~---~~p~~~v~GiDis~~~l~~a~~~~-~-------~~~d~v~~~f~d~~f~~~h~~~--------   79 (169)
                      ++|-+|||.= +..   ..-...++-+|+|+-.++....+. .       ...|...+.|+|++|+....+-        
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~d  130 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFED  130 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCC
Confidence            7999999999 332   223468999999999888776543 2       2333334567777776321110        


Q ss_pred             ---h---cccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         80 ---R---IINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        80 ---~---~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                         .   ......+.+++|+|+|||+++..|-
T Consensus       131 e~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  131 EDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             chhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence               0   0125689999999999999887663

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=95.77  E-value=0.069  Score=41.62  Aligned_cols=83  Identities=12%  Similarity=0.082  Sum_probs=53.8

Q ss_pred             CCeEEEEcCccc-ccC--cC-CCCcEEEEeCCHHHHHHHHHHhc-------------------------cccceEEEeCC
Q psy13086         18 KVEFVDVGCGKL-YLP--MF-PSTLILGLEIRVKVSDYVIDEWS-------------------------LYLKKMFFLYP   68 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~--~~-p~~~v~GiDis~~~l~~a~~~~~-------------------------~~~d~v~~~f~   68 (169)
                      +.++||+=+|+| |.-  .- -...++.||.+..++..+++|+.                         ..+|.|   |-
T Consensus        44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlV---fl  120 (187)
T COG0742          44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV---FL  120 (187)
T ss_pred             CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEE---Ee
Confidence            689999999999 221  11 23589999999999999988754                         124544   45


Q ss_pred             CCcccccchhhhcccHHHHHH--HHHhccCCcEEEEEeCCh
Q psy13086         69 DPHFKRCKYKWRIINQNLLSE--YAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        69 d~~f~~~h~~~~~~~~~~l~~--~~rvLkpGG~l~i~~d~~  107 (169)
                      ||-|......    ....+..  -...|+|+|.+++.++..
T Consensus       121 DPPy~~~l~~----~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         121 DPPYAKGLLD----KELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             CCCCccchhh----HHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            6655421110    0122222  347899999999987544

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=95.68  E-value=0.033  Score=41.43  Aligned_cols=67  Identities=12%  Similarity=0.107  Sum_probs=40.6

Q ss_pred             cEEEEeCCHHHHHHHHHHhc-----------------------c-ccceEEEeCC-CCcccccchhhhcccHHHHHHHHH
Q psy13086         38 LILGLEIRVKVSDYVIDEWS-----------------------L-YLKKMFFLYP-DPHFKRCKYKWRIINQNLLSEYAY   92 (169)
Q Consensus        38 ~v~GiDis~~~l~~a~~~~~-----------------------~-~~d~v~~~f~-d~~f~~~h~~~~~~~~~~l~~~~r   92 (169)
                      +|+|+||-+.+++.+++++.                       . .+|.+.+++- -|--|.....+.-..-.+++.+.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~   80 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE   80 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence            48999999999999988764                       1 3444443221 011111111111113568999999


Q ss_pred             hccCCcEEEEEe
Q psy13086         93 VLSEGGIVYTIT  104 (169)
Q Consensus        93 vLkpGG~l~i~~  104 (169)
                      +|+|||.+.++.
T Consensus        81 lL~~gG~i~iv~   92 (140)
T PF06962_consen   81 LLKPGGIITIVV   92 (140)
T ss_dssp             HEEEEEEEEEEE
T ss_pred             hhccCCEEEEEE
Confidence            999999999985

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG1122|consensus

Probab=95.64  E-value=0.1  Score=45.39  Aligned_cols=114  Identities=12%  Similarity=0.130  Sum_probs=69.7

Q ss_pred             CCCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEe
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFL   66 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~   66 (169)
                      +++.+|||..+-.|     +|.... ...|++.|.+.+-+...+.++.                       +++|.|.+.
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLD  319 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLD  319 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeeec
Confidence            35789999999999     554433 4589999999988887776543                       246666543


Q ss_pred             CC---------CCcccccchh---hhc--ccHHHHHHHHHhccCCcEEEEEe--CChHHHHHHH-HHHhcCCCceecCcc
Q psy13086         67 YP---------DPHFKRCKYK---WRI--INQNLLSEYAYVLSEGGIVYTIT--DVKDLHDWIV-SHFTEHPLFVECDLE  129 (169)
Q Consensus        67 f~---------d~~f~~~h~~---~~~--~~~~~l~~~~rvLkpGG~l~i~~--d~~~~~~~~~-~~~~~~~~f~~~~~~  129 (169)
                      -|         ++.++.....   .+.  .+.++|-.....+++||+|+-+|  -..+..++.. ..+..+|.++.++.+
T Consensus       320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~  399 (460)
T KOG1122|consen  320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTG  399 (460)
T ss_pred             CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEecccc
Confidence            22         2222211100   000  24678889999999999998875  2222222222 234567777666544

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=95.63  E-value=0.088  Score=41.54  Aligned_cols=99  Identities=11%  Similarity=-0.002  Sum_probs=55.9

Q ss_pred             EEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCCCCc--ccccchhhhcc--------c
Q psy13086         21 FVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYPDPH--FKRCKYKWRII--------N   83 (169)
Q Consensus        21 iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~d~~--f~~~h~~~~~~--------~   83 (169)
                      |.||||-.|     |.+...-..++++|+++.-++.|++++.  +--+.+.+...|.-  .+.......++        .
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI   80 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGELI   80 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHHH
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHHH
Confidence            689999999     5555555689999999999999998876  22233333322210  00000000111        2


Q ss_pred             HHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         84 QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      .+.|++....++..-.|+++.....  ..++..+..++
T Consensus        81 ~~ILe~~~~~~~~~~~lILqP~~~~--~~LR~~L~~~g  116 (205)
T PF04816_consen   81 IEILEAGPEKLSSAKRLILQPNTHA--YELRRWLYENG  116 (205)
T ss_dssp             HHHHHHTGGGGTT--EEEEEESS-H--HHHHHHHHHTT
T ss_pred             HHHHHhhHHHhccCCeEEEeCCCCh--HHHHHHHHHCC
Confidence            5677777777777778888765432  22455555554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=95.59  E-value=0.015  Score=47.17  Aligned_cols=39  Identities=13%  Similarity=0.234  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++..|||||+|+|     |+...  .++++||+++.+++..+++..
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~   73 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA   73 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT
T ss_pred             CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh
Confidence            4688999999999     43333  799999999999999988654

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.57  E-value=0.22  Score=39.57  Aligned_cols=102  Identities=15%  Similarity=0.162  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHH----HHHHHHH--h-c---------------cccceEEEeC
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKV----SDYVIDE--W-S---------------LYLKKMFFLY   67 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~----l~~a~~~--~-~---------------~~~d~v~~~f   67 (169)
                      ..++.+||=+|.-+|     ++..-++..+.|||.|+.+    +..|++|  + +               ..+|.++...
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV  153 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV  153 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence            445789999999999     5555566789999999964    4455543  1 1               4455554433


Q ss_pred             CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE--------e-CChHHHHHHHHHHhcCCCceecC
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI--------T-DVKDLHDWIVSHFTEHPLFVECD  127 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~--------~-d~~~~~~~~~~~~~~~~~f~~~~  127 (169)
                      .-|  +.        ..-+..++...||+||.++++        | |.+..+......+.+. .|+...
T Consensus       154 AQp--~Q--------a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~-~f~i~e  211 (231)
T COG1889         154 AQP--NQ--------AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEG-GFEILE  211 (231)
T ss_pred             CCc--hH--------HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhc-CceeeE
Confidence            222  10        134778888999999977664        1 3344555445555543 366543

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.31  E-value=0.076  Score=45.44  Aligned_cols=78  Identities=12%  Similarity=0.092  Sum_probs=57.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c---------------------ccceEEE-eCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L---------------------YLKKMFF-LYPD   69 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~---------------------~~d~v~~-~f~d   69 (169)
                      ..+|||-=+|||     +|.+-+...++.=|+|+++++.+++|+. +                     .+|.|.+ +|-.
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPFGS  132 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPFGS  132 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCCCC
Confidence            467999999999     6666666699999999999999998876 2                     1222221 1111


Q ss_pred             CcccccchhhhcccHHHHHHHHHhccCCcEEEEE-eCChH
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI-TDVKD  108 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~-~d~~~  108 (169)
                                   ...|+....+.++.||.+.++ ||...
T Consensus       133 -------------PaPFlDaA~~s~~~~G~l~vTATD~a~  159 (380)
T COG1867         133 -------------PAPFLDAALRSVRRGGLLCVTATDTAP  159 (380)
T ss_pred             -------------CchHHHHHHHHhhcCCEEEEEeccccc
Confidence                         146999999999999999986 56443

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.93  E-value=0.14  Score=42.23  Aligned_cols=80  Identities=11%  Similarity=0.142  Sum_probs=45.0

Q ss_pred             CCeEEEEcCccc------ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeC
Q psy13086         18 KVEFVDVGCGKL------YLPMF-PSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLY   67 (169)
Q Consensus        18 ~~~iLDiGCG~G------la~~~-p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f   67 (169)
                      ..+|+=||||.=      +++.+ +++.|+++|+++.+++.|++-+.                       ..+|.|++--
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            358999999977      66543 67899999999999999875322                       1112222110


Q ss_pred             CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      --..  ...     .-.++++.+.+.++||..+...+
T Consensus       201 lVg~--~~e-----~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  201 LVGM--DAE-----PKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             T-S-----------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             hccc--ccc-----hHHHHHHHHHhhCCCCcEEEEec
Confidence            0000  000     12579999999999999999986

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=94.74  E-value=0.11  Score=39.62  Aligned_cols=69  Identities=13%  Similarity=0.191  Sum_probs=49.2

Q ss_pred             cccceEEEeCCCCcccccchh-----hhcccHHHHHHHHHhccCCcEEEEEe-CChHHHHHHHHHHhcCCCceec
Q psy13086         58 LYLKKMFFLYPDPHFKRCKYK-----WRIINQNLLSEYAYVLSEGGIVYTIT-DVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        58 ~~~d~v~~~f~d~~f~~~h~~-----~~~~~~~~l~~~~rvLkpGG~l~i~~-d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      ..+|.|..+||-.-....+.+     .+.....|++.+..+|+++|.++++- +...|..|-...++++.++...
T Consensus        74 ~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~  148 (166)
T PF10354_consen   74 QRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLV  148 (166)
T ss_pred             CcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEE
Confidence            678888888886531111111     12234789999999999999999874 4556788888888888877664

>KOG2352|consensus

Probab=94.69  E-value=0.12  Score=45.57  Aligned_cols=97  Identities=13%  Similarity=0.113  Sum_probs=62.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------------cccceEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------------LYLKKMF   64 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------------~~~d~v~   64 (169)
                      ...+|-||-|.|     +...+|...+++|++.+.|++.|++...                            ...|.+.
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~  375 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM  375 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence            467888888888     5566788999999999999998864211                            2344443


Q ss_pred             EeCCCCcccccch----hhhcccHHHHHHHHHhccCCcEEEEE--eCChHHHHHHHHHH
Q psy13086         65 FLYPDPHFKRCKY----KWRIINQNLLSEYAYVLSEGGIVYTI--TDVKDLHDWIVSHF  117 (169)
Q Consensus        65 ~~f~d~~f~~~h~----~~~~~~~~~l~~~~rvLkpGG~l~i~--~d~~~~~~~~~~~~  117 (169)
                      .....+  + .|.    -..++.+.++..+..+|.|.|.|+|-  +.+..+...+...+
T Consensus       376 ~dvds~--d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l  431 (482)
T KOG2352|consen  376 VDVDSK--D-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNL  431 (482)
T ss_pred             EECCCC--C-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhh
Confidence            221110  1 111    01224578999999999999999774  44445544454444

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.57  E-value=0.074  Score=45.52  Aligned_cols=88  Identities=15%  Similarity=0.101  Sum_probs=47.6

Q ss_pred             CCeEEEEcCccc---cc--CcCCCC-cEEEEeCCHHHHHHH---HHHhc----------cccceEEEeCCCCcc------
Q psy13086         18 KVEFVDVGCGKL---YL--PMFPST-LILGLEIRVKVSDYV---IDEWS----------LYLKKMFFLYPDPHF------   72 (169)
Q Consensus        18 ~~~iLDiGCG~G---la--~~~p~~-~v~GiDis~~~l~~a---~~~~~----------~~~d~v~~~f~d~~f------   72 (169)
                      ..+|||+|.|.|   +|  ..+|+. .++-++.|+.+-+..   .+++.          -+.|...+...|..-      
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~  193 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD  193 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence            456999999999   33  457874 667778887543332   23321          111111111111100      


Q ss_pred             cccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         73 KRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        73 ~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      +..+..........++.+..++.|||.|+|+..
T Consensus       194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr  226 (484)
T COG5459         194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER  226 (484)
T ss_pred             hhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence            001111110113488999999999999999864

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.35  E-value=0.19  Score=41.40  Aligned_cols=33  Identities=15%  Similarity=0.060  Sum_probs=27.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYV   52 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a   52 (169)
                      +.+||==|||-|     +|..  +..+.|.|.|--|+-..
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s   94 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLAS   94 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHH
Confidence            578999999999     5554  67999999999987543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.33  E-value=0.17  Score=42.23  Aligned_cols=39  Identities=13%  Similarity=0.184  Sum_probs=31.6

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~   56 (169)
                      +...||.=-|.|     +....| ..+++|+|.++.+++.|++++
T Consensus        24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l   68 (314)
T COG0275          24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL   68 (314)
T ss_pred             CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHh
Confidence            578999999999     444455 456999999999999998754

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=94.30  E-value=0.073  Score=42.39  Aligned_cols=80  Identities=13%  Similarity=0.148  Sum_probs=51.3

Q ss_pred             CCeEEEEcCccc--ccCcCCCCcEEEEeCCHH--HHHHH---HHHhc----cccceEEE-----eCCCCcccccchhhhc
Q psy13086         18 KVEFVDVGCGKL--YLPMFPSTLILGLEIRVK--VSDYV---IDEWS----LYLKKMFF-----LYPDPHFKRCKYKWRI   81 (169)
Q Consensus        18 ~~~iLDiGCG~G--la~~~p~~~v~GiDis~~--~l~~a---~~~~~----~~~d~v~~-----~f~d~~f~~~h~~~~~   81 (169)
                      .-++|||||=+.  .....+-..|+.||+++.  -|.+.   +.-++    ..+|.|.+     +.|+|.       .| 
T Consensus        52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~-------~R-  123 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK-------QR-  123 (219)
T ss_pred             cceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHH-------HH-
Confidence            468999999755  233344457999999873  22111   11122    45666543     235542       11 


Q ss_pred             ccHHHHHHHHHhccCCcE-----EEEEeCCh
Q psy13086         82 INQNLLSEYAYVLSEGGI-----VYTITDVK  107 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~-----l~i~~d~~  107 (169)
                        -+.++.+++.|+|+|.     |+++.+.+
T Consensus       124 --G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~  152 (219)
T PF11968_consen  124 --GEMLRRAHKFLKPPGLSLFPSLFLVLPLP  152 (219)
T ss_pred             --HHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence              4799999999999999     99987543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.18  E-value=0.22  Score=42.23  Aligned_cols=71  Identities=11%  Similarity=0.080  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------cccceEEEeCCCCccc
Q psy13086         17 KKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        17 ~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~----------------~~~d~v~~~f~d~~f~   73 (169)
                      ++.+|+=+|+| |       +|+.. .++|+++|.|++-++.|++--.                ..+|.+...       
T Consensus       166 pG~~V~I~G~G-GlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t-------  236 (339)
T COG1064         166 PGKWVAVVGAG-GLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT-------  236 (339)
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC-------
Confidence            36889999999 8       44443 3899999999998888875311                112222211       


Q ss_pred             ccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         74 RCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        74 ~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                              +.+..+....+.||+||++.++-
T Consensus       237 --------v~~~~~~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         237 --------VGPATLEPSLKALRRGGTLVLVG  259 (339)
T ss_pred             --------CChhhHHHHHHHHhcCCEEEEEC
Confidence                    12568889999999999999873

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=94.18  E-value=0.11  Score=44.78  Aligned_cols=91  Identities=12%  Similarity=0.158  Sum_probs=53.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhc-cccce--EEEeCCCCcccc--cchhhhcc----
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWS-LYLKK--MFFLYPDPHFKR--CKYKWRII----   82 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~-~~~d~--v~~~f~d~~f~~--~h~~~~~~----   82 (169)
                      +.++||.=+|+|     .+.+.++ ..|+.-|+|+++++.+++|+. +.++.  +.+...|...-.  ......++    
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP  129 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP  129 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence            358999999999     5555443 689999999999999999866 22222  222211110000  00000111    


Q ss_pred             ---cHHHHHHHHHhccCCcEEEEE-eCChH
Q psy13086         83 ---NQNLLSEYAYVLSEGGIVYTI-TDVKD  108 (169)
Q Consensus        83 ---~~~~l~~~~rvLkpGG~l~i~-~d~~~  108 (169)
                         ...|+....+.+|.||.|.++ ||...
T Consensus       130 fGSp~pfldsA~~~v~~gGll~vTaTD~a~  159 (377)
T PF02005_consen  130 FGSPAPFLDSALQAVKDGGLLCVTATDTAV  159 (377)
T ss_dssp             SS--HHHHHHHHHHEEEEEEEEEEE--HHH
T ss_pred             CCCccHhHHHHHHHhhcCCEEEEecccccc
Confidence               147999999999999999997 45443

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK11524 putative methyltransferase; Provisional

Probab=94.13  E-value=0.061  Score=44.23  Aligned_cols=42  Identities=12%  Similarity=0.123  Sum_probs=36.1

Q ss_pred             CCCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         16 EKKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        16 ~~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++..|||-=||+|   +|...-+.+++|+|++++.++.|++|+.
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            44789999999999   5555557899999999999999999975

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=93.62  E-value=0.26  Score=45.11  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=19.3

Q ss_pred             cccHHHHHHHHHhccCCcEEEEE
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      +-.+++|+.++|.++|||+|.--
T Consensus       183 ~W~~~~~~~l~~~~~~~~~~~t~  205 (662)
T PRK01747        183 MWSPNLFNALARLARPGATLATF  205 (662)
T ss_pred             hccHHHHHHHHHHhCCCCEEEEe
Confidence            34589999999999999999743

>KOG1596|consensus

Probab=93.55  E-value=0.64  Score=38.03  Aligned_cols=80  Identities=10%  Similarity=0.150  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCH----HHHHHHHHHhc---------------cccceEEEeCCCC
Q psy13086         16 EKKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRV----KVSDYVIDEWS---------------LYLKKMFFLYPDP   70 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~----~~l~~a~~~~~---------------~~~d~v~~~f~d~   70 (169)
                      .+..+||=+|.++|     .+.. -|+--|++||.|.    .++..|++|-.               .-+-.|.+.|+|-
T Consensus       155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDv  234 (317)
T KOG1596|consen  155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFADV  234 (317)
T ss_pred             cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEeccC
Confidence            34689999999999     3333 3778999999997    47777776421               1122333444441


Q ss_pred             -cccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         71 -HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        71 -~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                       .++..        .-+.=+.+-.||+||.|.++
T Consensus       235 aqpdq~--------RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  235 AQPDQA--------RIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             CCchhh--------hhhhhhhhhhhccCCeEEEE
Confidence             22210        12333456789999999886

>KOG1562|consensus

Probab=93.43  E-value=1.1  Score=37.56  Aligned_cols=90  Identities=19%  Similarity=0.071  Sum_probs=62.6

Q ss_pred             CCeEEEEcCccc--ccC--cCCC-CcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086         18 KVEFVDVGCGKL--YLP--MFPS-TLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G--la~--~~p~-~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~   65 (169)
                      ..++|=||=|.|  +..  +.+. .+++-+|+..++++..++=++                           +.+|.+..
T Consensus       122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~  201 (337)
T KOG1562|consen  122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIIT  201 (337)
T ss_pred             CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEE
Confidence            578999999999  221  2243 378889999999988765222                           56666666


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHH
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHD  111 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~  111 (169)
                      .-+||.-..    -.+..+.++.-+.+.||+||.++.+.+.-.++.
T Consensus       202 dssdpvgpa----~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~  243 (337)
T KOG1562|consen  202 DSSDPVGPA----CALFQKPYFGLVLDALKGDGVVCTQGECMWLHL  243 (337)
T ss_pred             ecCCccchH----HHHHHHHHHHHHHHhhCCCcEEEEecceehHHH
Confidence            666664222    122346799999999999999999877654443

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.39  E-value=0.1  Score=39.71  Aligned_cols=85  Identities=19%  Similarity=0.207  Sum_probs=47.5

Q ss_pred             CeEEEEcCcccccCcCCCCcEEEEeCCH--HHHHHHHHHhc---cccceEEEeCCCCcccccchhhhcc---cHHHHHHH
Q psy13086         19 VEFVDVGCGKLYLPMFPSTLILGLEIRV--KVSDYVIDEWS---LYLKKMFFLYPDPHFKRCKYKWRII---NQNLLSEY   90 (169)
Q Consensus        19 ~~iLDiGCG~Gla~~~p~~~v~GiDis~--~~l~~a~~~~~---~~~d~v~~~f~d~~f~~~h~~~~~~---~~~~l~~~   90 (169)
                      +-.+-||||.=  .-+|++..+-++-.+  ..+..|.....   +++|+|..         .|.-..+.   --.+++++
T Consensus         4 p~kv~ig~G~~--r~npgWi~~d~ed~~~vdlvc~As~e~~F~dns~d~iya---------eHvlEHlt~~Eg~~alkec   72 (185)
T COG4627           4 PEKVKIGAGGK--RVNPGWIITDVEDRPEVDLVCRASNESMFEDNSVDAIYA---------EHVLEHLTYDEGTSALKEC   72 (185)
T ss_pred             ceEEEEecccc--ccCCCceeeehhcccccchhhhhhhhccCCCcchHHHHH---------HHHHHHHhHHHHHHHHHHH
Confidence            45788999972  233555554443332  23333433221   44554321         11111111   24699999


Q ss_pred             HHhccCCcEEEEEeCChHHHHHHH
Q psy13086         91 AYVLSEGGIVYTITDVKDLHDWIV  114 (169)
Q Consensus        91 ~rvLkpGG~l~i~~d~~~~~~~~~  114 (169)
                      +|+|||||.|-++.+...+..|.-
T Consensus        73 hr~Lrp~G~LriAvPdl~f~~~~Y   96 (185)
T COG4627          73 HRFLRPGGKLRIAVPDLKFLDWLY   96 (185)
T ss_pred             HHHhCcCcEEEEEcCCcchhHHHH
Confidence            999999999999977665555443

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.35  E-value=0.11  Score=41.94  Aligned_cols=75  Identities=13%  Similarity=0.133  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHH-----------hc--------cccceEEEeCCCCccc
Q psy13086         17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDE-----------WS--------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~-----------~~--------~~~d~v~~~f~d~~f~   73 (169)
                      ++..+||||.-||    .+.......|+|||+..+-+..-.++           ++        ...|.   ...|-+|-
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~---~v~DvSFI  155 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDL---IVIDVSFI  155 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCe---EEEEeehh
Confidence            4789999999999    44454567999999998655433211           11        11121   22222332


Q ss_pred             ccchhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086         74 RCKYKWRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        74 ~~h~~~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                      .        ....|..+..+|+|+|.++.
T Consensus       156 S--------L~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         156 S--------LKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             h--------HHHHHHHHHHhcCCCceEEE
Confidence            1        24688889999999998765

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=92.84  E-value=0.18  Score=42.18  Aligned_cols=39  Identities=10%  Similarity=0.192  Sum_probs=33.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      +..++|-=||.|     ++...++..|+|+|.++.+++.|++++
T Consensus        21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L   64 (305)
T TIGR00006        21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERL   64 (305)
T ss_pred             CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence            578999999999     555666689999999999999997653

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=92.52  E-value=0.11  Score=44.32  Aligned_cols=28  Identities=11%  Similarity=0.153  Sum_probs=22.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCH
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRV   46 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~   46 (169)
                      ++.++|||||++|     +.++  +..|+|||.++
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~  243 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP  243 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh
Confidence            3689999999999     4444  56999999554

>KOG1253|consensus

Probab=92.46  E-value=0.12  Score=45.86  Aligned_cols=77  Identities=13%  Similarity=0.260  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCC-cEEEEeCCHHHHHHHHHHhc--------------------------cccceE
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPST-LILGLEIRVKVSDYVIDEWS--------------------------LYLKKM   63 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~-~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v   63 (169)
                      ++..+|||.=|++|     .|...|+. .+++-|.+++.++..++|+.                          ..||.|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence            44678999999999     55566664 89999999999998887755                          234444


Q ss_pred             EE-eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE-eC
Q psy13086         64 FF-LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI-TD  105 (169)
Q Consensus        64 ~~-~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~-~d  105 (169)
                      .+ +|-.             ...||+...+.++.||.|++. ||
T Consensus       188 DLDPyGs-------------~s~FLDsAvqav~~gGLL~vT~TD  218 (525)
T KOG1253|consen  188 DLDPYGS-------------PSPFLDSAVQAVRDGGLLCVTCTD  218 (525)
T ss_pred             ecCCCCC-------------ccHHHHHHHHHhhcCCEEEEEecc
Confidence            33 1211             246999999999999999986 45

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=92.37  E-value=0.35  Score=39.65  Aligned_cols=85  Identities=11%  Similarity=0.122  Sum_probs=51.8

Q ss_pred             CCeEEEEcCccc---------ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceE-----------------EEe
Q psy13086         18 KVEFVDVGCGKL---------YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKM-----------------FFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G---------la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v-----------------~~~   66 (169)
                      ....+|+|.|+-         ++.+..-..++.||+|...++.-.+.+.     -.+.++                 .+.
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~  158 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV  158 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence            467999999999         5555555799999999998765433221     000000                 011


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      |+-.+..+..-.   ....|+..+..+|+||-.|.+-+|
T Consensus       159 flGStlGN~tp~---e~~~Fl~~l~~a~~pGd~~LlGvD  194 (321)
T COG4301         159 FLGSTLGNLTPG---ECAVFLTQLRGALRPGDYFLLGVD  194 (321)
T ss_pred             EecccccCCChH---HHHHHHHHHHhcCCCcceEEEecc
Confidence            211111100000   125799999999999999999765

>PRK13699 putative methylase; Provisional

Probab=92.36  E-value=0.17  Score=40.42  Aligned_cols=42  Identities=10%  Similarity=0.042  Sum_probs=35.2

Q ss_pred             CCCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         16 EKKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        16 ~~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++..|||-=||+|   +|...-+.+++|+|+++...+.|.+|+.
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~  206 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLA  206 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Confidence            34689999999999   5544457799999999999999988875

>KOG1501|consensus

Probab=92.32  E-value=0.099  Score=45.96  Aligned_cols=37  Identities=19%  Similarity=0.151  Sum_probs=30.4

Q ss_pred             CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086         18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVID   54 (169)
Q Consensus        18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~   54 (169)
                      ...+||||.|||    +|.+-..-.++++|+-..|.+.|++
T Consensus        67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ark  107 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARK  107 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHH
Confidence            457999999999    5544444589999999999999985

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=92.10  E-value=0.83  Score=38.75  Aligned_cols=40  Identities=8%  Similarity=0.111  Sum_probs=30.6

Q ss_pred             CCCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHH
Q psy13086         16 EKKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDE   55 (169)
Q Consensus        16 ~~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~   55 (169)
                      .++.+||.+|||. |     +|+......++++|.++.+++.+++.
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            3467899999987 6     55555444699999999998888764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=91.99  E-value=0.78  Score=37.71  Aligned_cols=85  Identities=11%  Similarity=0.060  Sum_probs=46.1

Q ss_pred             CeEEEEcCccc-------ccC-cCCCCcEEEEeCCHHHHHHHHHHhccc----cceEE------------------EeCC
Q psy13086         19 VEFVDVGCGKL-------YLP-MFPSTLILGLEIRVKVSDYVIDEWSLY----LKKMF------------------FLYP   68 (169)
Q Consensus        19 ~~iLDiGCG~G-------la~-~~p~~~v~GiDis~~~l~~a~~~~~~~----~d~v~------------------~~f~   68 (169)
                      ...||||||-=       .|+ ..|+++|+=||..+-++.+++.-+..+    ...+.                  +.|.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~  149 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD  149 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence            56999999965       443 479999999999999998887644311    11111                  0111


Q ss_pred             CCc----ccccchhhh-cccHHHHHHHHHhccCCcEEEEE
Q psy13086         69 DPH----FKRCKYKWR-IINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        69 d~~----f~~~h~~~~-~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      -|.    ....|+... -....+++.+...|.||..|.|+
T Consensus       150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~is  189 (267)
T PF04672_consen  150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAIS  189 (267)
T ss_dssp             S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEE
T ss_pred             CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEE
Confidence            110    001122211 11357999999999999999997

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PHA01634 hypothetical protein

Probab=91.40  E-value=0.37  Score=35.62  Aligned_cols=41  Identities=12%  Similarity=0.031  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCccc-ccCcC---CCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-YLPMF---PSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-la~~~---p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|+|||.+-| -|..|   ....|+++++++++.+..+++++
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k   72 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA   72 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence            4688999999999 22222   23589999999999999988765

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=91.28  E-value=0.25  Score=38.91  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=31.8

Q ss_pred             CeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         19 VEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        19 ~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++-|+|.|+|    .|... ..+|++|+.++.-.++|.+|+.
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~   75 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLH   75 (252)
T ss_pred             hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCC
Confidence            56899999999    44444 4599999999999999999965

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=91.00  E-value=0.99  Score=38.94  Aligned_cols=69  Identities=10%  Similarity=-0.011  Sum_probs=39.9

Q ss_pred             EEEEeCCHHHHHHHHHHhc--cccceEEEe------CCCC--c---------ccccchhhhc---ccHHHHHHHHHhccC
Q psy13086         39 ILGLEIRVKVSDYVIDEWS--LYLKKMFFL------YPDP--H---------FKRCKYKWRI---INQNLLSEYAYVLSE   96 (169)
Q Consensus        39 v~GiDis~~~l~~a~~~~~--~~~d~v~~~------f~d~--~---------f~~~h~~~~~---~~~~~l~~~~rvLkp   96 (169)
                      ++|+|+++.|++.|+.|+.  +..|.|.+.      ++.|  .         ...+-.....   ..+.+.+.+.+.++-
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~  336 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG  336 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC
Confidence            7799999999999998865  222222210      1111  1         1111111111   124677778888888


Q ss_pred             CcEEEEEeCCh
Q psy13086         97 GGIVYTITDVK  107 (169)
Q Consensus        97 GG~l~i~~d~~  107 (169)
                      -+.++|+++-.
T Consensus       337 ws~~v~tt~e~  347 (381)
T COG0116         337 WSRYVFTTSED  347 (381)
T ss_pred             CceEEEEccHH
Confidence            88888877443

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=90.89  E-value=0.21  Score=39.57  Aligned_cols=85  Identities=15%  Similarity=0.198  Sum_probs=35.8

Q ss_pred             CCCeEEEEcCccc-----c---cCc-CCCCcEEEEeCCHHHHHH-HH------HHhc----ccc-----ceEEE--eCCC
Q psy13086         17 KKVEFVDVGCGKL-----Y---LPM-FPSTLILGLEIRVKVSDY-VI------DEWS----LYL-----KKMFF--LYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----l---a~~-~p~~~v~GiDis~~~l~~-a~------~~~~----~~~-----d~v~~--~f~d   69 (169)
                      |+.+|+|+|.=.|     .   ... .+..+|+|||+...-... |.      .++.    .+.     +.+..  ..+.
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~  111 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH  111 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence            4688999999998     2   233 377899999996432221 11      2222    111     11100  0122


Q ss_pred             Ccc---cccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         70 PHF---KRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        70 ~~f---~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      |+.   |..|....  .-..|+.++.++++|+.+++.
T Consensus       112 ~vlVilDs~H~~~h--vl~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen  112 PVLVILDSSHTHEH--VLAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             SEEEEESS----SS--HHHHHHHHHHT--TT-EEEET
T ss_pred             ceEEEECCCccHHH--HHHHHHHhCccCCCCCEEEEE
Confidence            221   22222222  245677799999999999874

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=90.64  E-value=1.8  Score=34.38  Aligned_cols=21  Identities=14%  Similarity=0.180  Sum_probs=18.9

Q ss_pred             HHHHHHHHHhccCCcEEEEEe
Q psy13086         84 QNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .++.+++++.|||||.+.+..
T Consensus       146 ~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         146 AKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             HHHHHHHHHhcCCCcEEEEEe
Confidence            678999999999999999874

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=90.04  E-value=0.23  Score=39.73  Aligned_cols=39  Identities=10%  Similarity=0.104  Sum_probs=28.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCC--CcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPS--TLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~--~~v~GiDis~~~l~~a~~~~   56 (169)
                      .-++-|=.||.|     +...++.  .+|+|-||++++++.|++|+
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL   97 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL   97 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence            467999999999     3333333  58999999999999998764

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=89.39  E-value=0.42  Score=37.76  Aligned_cols=45  Identities=11%  Similarity=0.121  Sum_probs=32.6

Q ss_pred             CCCCCCCeEEEEcCccc---ccC-cCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         13 PTCEKKVEFVDVGCGKL---YLP-MFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        13 ~~~~~~~~iLDiGCG~G---la~-~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      |++-++.+|||+|.|+|   ++. +.-...|+..|+.+..+..++-|+.
T Consensus        75 PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~  123 (218)
T COG3897          75 PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAA  123 (218)
T ss_pred             ccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchh
Confidence            34556789999999999   333 3344689999999877766665554

>KOG3201|consensus

Probab=88.83  E-value=0.73  Score=35.52  Aligned_cols=80  Identities=11%  Similarity=0.064  Sum_probs=53.7

Q ss_pred             CeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         19 VEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        19 ~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..|||+|-|-=      +|..-|+..|.-.|-++..++..++-+.                          ..||.|.  
T Consensus        31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl--  108 (201)
T KOG3201|consen   31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL--  108 (201)
T ss_pred             HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE--
Confidence            56999998854      6666788899999999988876653111                          2455432  


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ..|=.|=..|      ..++++-+.+.|+|.|...+.++-
T Consensus       109 aADClFfdE~------h~sLvdtIk~lL~p~g~Al~fsPR  142 (201)
T KOG3201|consen  109 AADCLFFDEH------HESLVDTIKSLLRPSGRALLFSPR  142 (201)
T ss_pred             eccchhHHHH------HHHHHHHHHHHhCcccceeEecCc
Confidence            2222111112      257899999999999998887764

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=88.69  E-value=0.61  Score=37.90  Aligned_cols=40  Identities=18%  Similarity=0.096  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      ++.++||||.|.-     +..+-=+..++|.|+++..++.|+..+
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii  122 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAII  122 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHH
Confidence            5678999999887     333333679999999999999887543

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=88.48  E-value=0.27  Score=39.60  Aligned_cols=39  Identities=15%  Similarity=0.200  Sum_probs=27.6

Q ss_pred             CCeEEEEcCccc---------ccCcCC----CCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL---------YLPMFP----STLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G---------la~~~p----~~~v~GiDis~~~l~~a~~~~   56 (169)
                      ...|+|+|.|+|         +....|    ..+++-||+|+.+.+..++++
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L   70 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL   70 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence            368999999999         333323    469999999999887776654

; PDB: 4F3N_A 1ZKD_B.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=88.35  E-value=0.34  Score=40.63  Aligned_cols=39  Identities=15%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      +..+||.=.|.|     +....|+..++|+|.++.+++.|++++
T Consensus        21 ~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l   64 (310)
T PF01795_consen   21 GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERL   64 (310)
T ss_dssp             T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCT
T ss_pred             CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHH
Confidence            578999999999     556667799999999999999998654

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG2730|consensus

Probab=88.33  E-value=0.36  Score=38.87  Aligned_cols=39  Identities=13%  Similarity=0.148  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ..+.|+|.=||.|     .|..  ...|++||+++--|..|+.|++
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNae  137 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAE  137 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccce
Confidence            3678999988888     4444  4689999999999999998865

>KOG2793|consensus

Probab=87.99  E-value=2.7  Score=34.23  Aligned_cols=101  Identities=11%  Similarity=0.228  Sum_probs=56.5

Q ss_pred             CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHH--HHHH--Hhc-----cccceEEEeCC--------CCc-cccc
Q psy13086         18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSD--YVID--EWS-----LYLKKMFFLYP--------DPH-FKRC   75 (169)
Q Consensus        18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~--~a~~--~~~-----~~~d~v~~~f~--------d~~-f~~~   75 (169)
                      ..+|||+|.|+|    ++.....++|.--|....+..  ..++  ++.     +++....+..-        -|+ ++..
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli  166 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI  166 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence            457999999999    444446678877776654332  2211  111     13333222221        112 2211


Q ss_pred             chhhhc----ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHh
Q psy13086         76 KYKWRI----INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFT  118 (169)
Q Consensus        76 h~~~~~----~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~  118 (169)
                      -..+-+    ..+.+++-++..|..+|.+++.+...+-+.|-...+.
T Consensus       167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~  213 (248)
T KOG2793|consen  167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLL  213 (248)
T ss_pred             EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHH
Confidence            111100    1367889999999999999998887775555554443

>KOG4058|consensus

Probab=87.22  E-value=0.66  Score=35.27  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=28.2

Q ss_pred             CCCeEEEEcCccc---ccCc-CCCCcEEEEeCCHHHHHHHH
Q psy13086         17 KKVEFVDVGCGKL---YLPM-FPSTLILGLEIRVKVSDYVI   53 (169)
Q Consensus        17 ~~~~iLDiGCG~G---la~~-~p~~~v~GiDis~~~l~~a~   53 (169)
                      +..+.+|+|.|.|   ++.. .--..-+|+|+++=.+.+++
T Consensus        72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysr  112 (199)
T KOG4058|consen   72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSR  112 (199)
T ss_pred             CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHH
Confidence            3678999999999   4432 22247789999998888776

>KOG2920|consensus

Probab=85.87  E-value=0.54  Score=38.91  Aligned_cols=33  Identities=12%  Similarity=0.240  Sum_probs=23.3

Q ss_pred             CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHH
Q psy13086         18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSD   50 (169)
Q Consensus        18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~   50 (169)
                      ..+|||+|||+|    .+-.-....+.-.|+|...++
T Consensus       117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             CceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            578999999999    222222267888888887764

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=83.49  E-value=1.2  Score=35.60  Aligned_cols=39  Identities=13%  Similarity=0.159  Sum_probs=33.7

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ..+.||||=.|     +-+.++...+++.|+++.-++.|.++++
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~   61 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVK   61 (226)
T ss_pred             CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHH
Confidence            44999999999     5566788899999999999999988765

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=82.24  E-value=9  Score=34.02  Aligned_cols=87  Identities=16%  Similarity=0.085  Sum_probs=54.1

Q ss_pred             eEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHH--------------------hc---------cccceE
Q psy13086         20 EFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDE--------------------WS---------LYLKKM   63 (169)
Q Consensus        20 ~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~--------------------~~---------~~~d~v   63 (169)
                      +|.=||+|..       +|..-++.+|+|+|+++.-++..++.                    +.         ...|.+
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~advi   82 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIV   82 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCEE
Confidence            4677888887       44443457899999999877765321                    11         235666


Q ss_pred             EEeCCCCccccc---chhhhc-ccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         64 FFLYPDPHFKRC---KYKWRI-INQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        64 ~~~f~d~~f~~~---h~~~~~-~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ++..+.|....-   .....+ ....+++++.+.|++|-.+++.|..
T Consensus        83 ~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STv  129 (473)
T PLN02353         83 FVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV  129 (473)
T ss_pred             EEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence            677776643110   000011 1357899999999988877777643

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=81.43  E-value=0.75  Score=38.43  Aligned_cols=87  Identities=13%  Similarity=0.068  Sum_probs=50.2

Q ss_pred             CeEEEEcCccc---------ccCcCCCCcEEEEeCCHHHHHH-H--HHHhccccceEEEeCCCCcccc--cchhhhcccH
Q psy13086         19 VEFVDVGCGKL---------YLPMFPSTLILGLEIRVKVSDY-V--IDEWSLYLKKMFFLYPDPHFKR--CKYKWRIINQ   84 (169)
Q Consensus        19 ~~iLDiGCG~G---------la~~~p~~~v~GiDis~~~l~~-a--~~~~~~~~d~v~~~f~d~~f~~--~h~~~~~~~~   84 (169)
                      ...+=.|+|||         |..++|+.+++|+|+....+-. .  -.+++    .+-..|-...++.  ......+..+
T Consensus       170 ~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~----GIG~~~ip~~~~~~~iD~v~~V~d~  245 (300)
T COG0031         170 VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIE----GIGAGFVPENLDLDLIDEVIRVSDE  245 (300)
T ss_pred             CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccC----CCCCCcCCcccccccCceEEEECHH
Confidence            56778899999         6678899999999998543221 1  11111    1111110011110  1111122347


Q ss_pred             HHHHHHHHhccCCcEEEEEeCChHH
Q psy13086         85 NLLSEYAYVLSEGGIVYTITDVKDL  109 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~d~~~~  109 (169)
                      +.+..++++.+..|.|.=.|-...+
T Consensus       246 ~A~~~~r~La~~eGilvG~SsGA~~  270 (300)
T COG0031         246 EAIATARRLAREEGLLVGISSGAAL  270 (300)
T ss_pred             HHHHHHHHHHHHhCeeecccHHHHH
Confidence            8999999999999998765544433

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=81.33  E-value=2.7  Score=36.12  Aligned_cols=39  Identities=13%  Similarity=0.269  Sum_probs=29.5

Q ss_pred             CCeEEEEcCccc---------ccCcCC----CCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL---------YLPMFP----STLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G---------la~~~p----~~~v~GiDis~~~l~~a~~~~   56 (169)
                      +-.++|||.|+|         +.+..|    ..++.-||+|++..+.-++++
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L  129 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL  129 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence            567999999999         223334    579999999999887765543

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=80.63  E-value=1.2  Score=31.75  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=18.4

Q ss_pred             HHHHHHHHHhccCCcEEEEEe
Q psy13086         84 QNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..+++.+++.|+|||.|++.-
T Consensus        24 ~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen   24 KRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE-
T ss_pred             HHHHHHHHHhhCCCCEEEEeC
Confidence            469999999999999999964

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=80.06  E-value=10  Score=32.00  Aligned_cols=78  Identities=13%  Similarity=0.135  Sum_probs=52.2

Q ss_pred             CeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeC----------------CCCcccccc
Q psy13086         19 VEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLY----------------PDPHFKRCK   76 (169)
Q Consensus        19 ~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f----------------~d~~f~~~h   76 (169)
                      .+++=+|||.=      +++......|+.+|.++.-++.|++...  .+.+...-                .|-.++.. 
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g--~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~-  246 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG--ADVVVNPSEDDAGAEILELTGGRGADVVIEAV-  246 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC--CeEeecCccccHHHHHHHHhCCCCCCEEEECC-
Confidence            38999999984      5566677899999999999999987432  01000000                01011111 


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                           -.+..+....++++|||++.+..
T Consensus       247 -----G~~~~~~~ai~~~r~gG~v~~vG  269 (350)
T COG1063         247 -----GSPPALDQALEALRPGGTVVVVG  269 (350)
T ss_pred             -----CCHHHHHHHHHHhcCCCEEEEEe
Confidence                 13568999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	169
3ckk_A	235	Crystal Structure Of Human Methyltransferase-Like P		4e-48
2vdu_E	254	Structure Of Trm8-Trm82, The Yeast Trna M7g Methyla		3e-40
2vdv_E	246	Structure Of Trm8, M7g Methylation Enzyme Length =		4e-40

>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein 1 Length = 235

Iteration: 1
 Score =  186 bits (473), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/216 (49%), Positives = 125/216 (57%), Gaps = 52/216 (24%)
Query: 1   MDWSPLYPEL----------------KDPTCEKKVEFVDVGCGKLYL-----PMFPSTLI 39
           MDWS LYPE                 K+   + +VEF D+GCG   L     P+FP TLI
Sbjct: 14  MDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLI 73
Query: 40  LGLEIRVKVSDYVIDE------------------------------WSLYLKKMFFLYPD 69
           LGLEIRVKVSDYV D                               +   L KMFFL+PD
Sbjct: 74  LGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPD 133
Query: 70  PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLE 129
           PHFKR K+KWRII+  LL+EYAYVL  GG+VYTITDV +LHDW+ +HF EHPLF    LE
Sbjct: 134 PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLE 193
Query: 130 ELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
           +L   DPVV  L  STEEG+KV RN G+ F A+FRR
Sbjct: 194 DLSE-DPVVGHLGTSTEEGKKVLRNGGKNFPAIFRR 228

>pdb|2VDU|E Chain E, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation Complex Length = 254

Iteration: 1
 Score =  160 bits (405), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/205 (46%), Positives = 113/205 (55%), Gaps = 41/205 (20%)
Query: 1   MDWSPLYPELKDP---TCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYV 52
           MDWS LYP  K+       KKV   D+GCG   L     P FP  LILG+EIRV+V++YV
Sbjct: 38  MDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYV 97
Query: 53  IDEW--------------------------------SLYLKKMFFLYPDPHFKRCKYKWR 80
            D                                     L KMFF +PDPHFK+ K+K R
Sbjct: 98  EDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKAR 157
Query: 81  IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDK 140
           II   LLSEYAYVL EGG+VYTITDVKDLH+W+V H  EHPLF     +E +  D  V  
Sbjct: 158 IITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPLFERLS-KEWEENDECVKI 216
Query: 141 LYQSTEEGQKVTRNKGEKFCAVFRR 165
           +  +TEEG+KV R KG+KF A F R
Sbjct: 217 MRNATEEGKKVERKKGDKFVACFTR 241

>pdb|2VDV|E Chain E, Structure Of Trm8, M7g Methylation Enzyme Length = 246

Iteration: 1
 Score =  160 bits (404), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/205 (46%), Positives = 113/205 (55%), Gaps = 41/205 (20%)
Query: 1   MDWSPLYPELKDP---TCEKKVEFVDVGCGKLYL-----PMFPSTLILGLEIRVKVSDYV 52
           MDWS LYP  K+       KKV   D+GCG   L     P FP  LILG+EIRV+V++YV
Sbjct: 30  MDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYV 89
Query: 53  IDEW--------------------------------SLYLKKMFFLYPDPHFKRCKYKWR 80
            D                                     L KMFF +PDPHFK+ K+K R
Sbjct: 90  EDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKAR 149
Query: 81  IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDK 140
           II   LLSEYAYVL EGG+VYTITDVKDLH+W+V H  EHPLF     +E +  D  V  
Sbjct: 150 IITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPLFERLS-KEWEENDECVKI 208
Query: 141 LYQSTEEGQKVTRNKGEKFCAVFRR 165
           +  +TEEG+KV R KG+KF A F R
Sbjct: 209 MRNATEEGKKVERKKGDKFVACFTR 233

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	2e-49
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	4e-48
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	3e-10
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	8e-10
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	2e-09

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Length = 246

 Score =  158 bits (402), Expect = 2e-49
 Identities = 95/205 (46%), Positives = 113/205 (55%), Gaps = 41/205 (20%)

Query: 1   MDWSPLYPELKDPTCE---KKVEFVDVGCGK----LYL-PMFPSTLILGLEIRVKVSDYV 52
           MDWS LYP  K+       KKV   D+GCG     + L P FP  LILG+EIRV+V++YV
Sbjct: 30  MDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYV 89

Query: 53  IDEWSLY--------------------------------LKKMFFLYPDPHFKRCKYKWR 80
            D                                     L KMFF +PDPHFK+ K+K R
Sbjct: 90  EDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKAR 149

Query: 81  IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDK 140
           II   LLSEYAYVL EGG+VYTITDVKDLH+W+V H  EHPLF     E  +  D  V  
Sbjct: 150 IITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPLFERLSKEWEEN-DECVKI 208

Query: 141 LYQSTEEGQKVTRNKGEKFCAVFRR 165
           +  +TEEG+KV R KG+KF A F R
Sbjct: 209 MRNATEEGKKVERKKGDKFVACFTR 233

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235

 Score =  154 bits (392), Expect = 4e-48
 Identities = 107/216 (49%), Positives = 123/216 (56%), Gaps = 52/216 (24%)

Query: 1   MDWSPLYPELKDPTCE----------------KKVEFVDVGCGK-LYL----PMFPSTLI 39
           MDWS LYPE   P  +                 +VEF D+GCG    L    P+FP TLI
Sbjct: 14  MDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLI 73

Query: 40  LGLEIRVKVSDYVIDEWSLY------------------------------LKKMFFLYPD 69
           LGLEIRVKVSDYV D                                   L KMFFL+PD
Sbjct: 74  LGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPD 133

Query: 70  PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLE 129
           PHFKR K+KWRII+  LL+EYAYVL  GG+VYTITDV +LHDW+ +HF EHPLF    LE
Sbjct: 134 PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLE 193

Query: 130 ELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR 165
           +L   DPVV  L  STEEG+KV RN G+ F A+FRR
Sbjct: 194 DL-SEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRR 228

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* Length = 218

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 60  LKKMFFLYPDP-----HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIV 114
           L+ +   +PDP     H KR     RI+           L  GG+ +  TD +   + ++
Sbjct: 106 LRMVQLFFPDPWHKARHNKR-----RIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHML 160

Query: 115 SHFTEHPLF 123
              +    +
Sbjct: 161 EVMSSIDGY 169

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214

 Score = 54.6 bits (132), Expect = 8e-10
 Identities = 15/77 (19%), Positives = 38/77 (49%)

Query: 60  LKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119
           + +++  + DP  K+   K R+  +  L  +  +L E G ++  TD + L ++ +  F++
Sbjct: 112 IDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQ 171

Query: 120 HPLFVECDLEELKRTDP 136
           + + +     +L  +D 
Sbjct: 172 YGMKLNGVWLDLHASDF 188

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 18/77 (23%), Positives = 41/77 (53%)

Query: 60  LKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE 119
           +K+++  + DP  K+   K R+   + L +Y  V+ +GG ++  TD + L ++ +  F+E
Sbjct: 109 VKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE 168

Query: 120 HPLFVECDLEELKRTDP 136
           + L +     +L  ++ 
Sbjct: 169 YGLLLTYVSLDLHNSNL 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	100.0
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.97
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.96
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.96
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.95
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.61
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.6
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.57
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.57
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.54
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.52
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.48
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.47
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.46
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.45
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.45
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.44
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.44
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.44
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.43
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.43
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.43
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.43
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.43
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.43
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.42
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.42
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.42
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.42
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.42
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.42
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.42
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.41
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.41
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.41
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.4
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.4
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.4
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.4
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.39
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.39
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.39
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.39
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.39
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.39
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.39
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.39
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.39
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.39
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.38
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.38
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.38
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.38
3ocj_A	305	Putative exported protein; structural genomics, PS	99.38
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.38
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.37
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.37
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.37
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.37
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.37
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.36
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.36
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.36
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.36
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.36
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.36
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.35
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.35
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.35
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.35
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.34
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.34
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.34
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.34
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.34
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.34
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.34
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.34
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.34
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.33
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.33
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.33
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.33
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.33
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.33
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.33
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.33
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.33
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.33
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.32
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.32
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.32
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.32
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.32
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.32
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.32
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.32
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.32
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.32
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.31
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.31
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.31
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.31
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.31
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.3
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.3
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.3
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.3
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.3
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.29
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.29
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.29
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.29
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.29
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.29
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.29
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.29
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.28
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.28
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.28
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.28
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.28
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.28
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.28
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.27
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.27
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.26
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.26
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.26
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.25
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.25
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.25
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.24
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.24
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.24
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.24
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.24
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.23
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.23
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.23
2o07_A	304	Spermidine synthase; structural genomics, structur	99.23
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.23
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.22
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.22
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.22
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.22
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.2
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.2
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.19
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.19
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.19
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.19
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.19
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.19
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.18
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.18
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.17
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.17
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.17
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.17
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.16
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.16
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.16
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.16
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.15
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.14
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.14
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.14
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.14
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.14
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.14
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.14
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.13
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.13
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.12
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.12
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.12
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.11
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.11
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.11
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.11
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.11
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.1
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.1
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.1
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.1
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.09
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.09
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.09
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.08
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.07
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.07
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.06
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.05
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.05
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.05
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.04
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.04
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.03
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.03
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.02
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.01
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.01
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.01
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.0
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.0
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.98
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.98
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.98
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.98
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.97
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.97
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.96
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.95
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.95
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.95
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.95
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.95
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.93
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.92
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.92
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.92
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.91
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.91
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.89
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.88
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.88
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.86
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.85
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.85
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.85
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.84
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.83
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.81
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.8
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.8
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.79
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.78
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.78
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.77
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.77
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.75
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.74
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.72
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.72
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.71
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.69
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.67
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.61
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.61
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.53
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.51
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.51
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.4
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.39
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.37
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.35
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.34
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.32
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.31
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.3
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.27
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.26
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.23
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.21
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.21
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.17
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.08
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.03
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.0
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.94
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.92
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.92
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.91
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.89
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.87
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.85
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.85
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.84
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.75
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.75
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.73
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.68
3lkd_A	542	Type I restriction-modification system methyltrans	97.62
3khk_A	544	Type I restriction-modification system methylation	97.59
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.47
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.4
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.31
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.28
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.97
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.85
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	96.83
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	96.79
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.38
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.24
3ufb_A	530	Type I restriction-modification system methyltran	95.65
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	95.04
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.81
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	94.53
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	94.45
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	94.4
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	94.38
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	94.25
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.1
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	93.33
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.98
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	92.45
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	92.24
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	91.78
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	90.44
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	90.41
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	89.47
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	89.18
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	89.14
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	88.29
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	88.15
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	87.69
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	87.04
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	86.94
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	86.92
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	86.02
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	83.78
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	83.66
3gms_A	340	Putative NADPH:quinone reductase; structural genom	83.51
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	83.36
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	83.17
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	81.91
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	81.91
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	81.54

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=100.00  E-value=3.9e-32  Score=215.98  Aligned_cols=167  Identities=63%  Similarity=1.076  Sum_probs=128.0

Q ss_pred             CCCCccCCCCCCCC----------------CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh---
Q psy13086          1 MDWSPLYPELKDPT----------------CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW---   56 (169)
Q Consensus         1 ~~~~~~f~~~~~~~----------------~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~---   56 (169)
                      |||+..|+..-++.                ..++.+|||||||+|     +|..+|+.+|+|||+|+.|++.|++++   
T Consensus        14 ~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l   93 (235)
T 3ckk_A           14 MDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRAL   93 (235)
T ss_dssp             CCCTTTCTTC----------------------CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCchhhCccccccccccccccccccccccccCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence            79999999763211                234578999999999     788899999999999999999886431   


Q ss_pred             -----------c----------------cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHH
Q psy13086         57 -----------S----------------LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDL  109 (169)
Q Consensus        57 -----------~----------------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~  109 (169)
                                 .                +++|.|++.|++||++.+|++++++.+.++++++++|||||.|+++++.+.|
T Consensus        94 ~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~  173 (235)
T 3ckk_A           94 RAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLEL  173 (235)
T ss_dssp             HHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHH
T ss_pred             HHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHH
Confidence                       1                4678889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeccC
Q psy13086        110 HDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGRH  168 (169)
Q Consensus       110 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~~~  168 (169)
                      ..|+.+.+..++.|......... .++........|+||++|.++|..+|+++|+|++.
T Consensus       174 ~~~~~~~l~~~~~f~~~~~~~~~-~~~~~~~~~~~t~~e~k~~~~G~~~~~~~f~r~~~  231 (235)
T 3ckk_A          174 HDWMCTHFEEHPLFERVPLEDLS-EDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQD  231 (235)
T ss_dssp             HHHHHHHHHTSTTEEEECGGGGT-TCTTGGGTTTSSHHHHHHHHTTCCCEEEEEEECCC
T ss_pred             HHHHHHHHHHCCCccccCchhcc-cCccccCCCCCCHHHHHHHHCCCCeEEEEEEECCC
Confidence            99999999999999887543321 22222345678999999999999999999999864

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.97  E-value=1.1e-31  Score=210.98  Aligned_cols=157  Identities=17%  Similarity=0.185  Sum_probs=136.7

Q ss_pred             CCCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------
Q psy13086          1 MDWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------   57 (169)
Q Consensus         1 ~~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------   57 (169)
                      +||.++|++.       +++|||||||+|     +|..+|+.+|+|||+|+.|++.|++++.                  
T Consensus        25 ~d~~~~f~~~-------~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l   97 (218)
T 3dxy_A           25 LDFPALFGRE-------APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVL   97 (218)
T ss_dssp             CCHHHHHSSC-------CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHH
T ss_pred             CCHHHHcCCC-------CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence            4677788774       689999999999     7788999999999999999999876532                  


Q ss_pred             ------cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCcccc
Q psy13086         58 ------LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEEL  131 (169)
Q Consensus        58 ------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~  131 (169)
                            +++|.|.+.||+||++..|++++++.+.++++++++|||||.|+++||.+.|++++.+.+..++.|..+.... 
T Consensus        98 ~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~~~~~~-  176 (218)
T 3dxy_A           98 HKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESN-  176 (218)
T ss_dssp             HHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEECCTTS-
T ss_pred             HHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcccccCcC-
Confidence                  5788999999999999999999999999999999999999999999999999999999999999898875432 


Q ss_pred             ccCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEecc
Q psy13086        132 KRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGR  167 (169)
Q Consensus       132 ~~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~~  167 (169)
                      +|...  ....+.|+||+++.++|+.+++++|+|++
T Consensus       177 ~~~~~--~~~~~~t~fE~k~~~~G~~~~~~~~~~~~  210 (218)
T 3dxy_A          177 DYVPR--PASRPVTKFEQRGHRLGHGVWDLMFERVK  210 (218)
T ss_dssp             SCBCC--CTTSCCCTTCCTTCTTCCSCEEEEEEECC
T ss_pred             ccCCC--CCCCCCcHHHHHHHHCCCCeEEEEEEEcc
Confidence            22221  34578999999999999999999999964

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.96  E-value=5.5e-30  Score=200.01  Aligned_cols=155  Identities=19%  Similarity=0.276  Sum_probs=129.6

Q ss_pred             CCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------
Q psy13086          2 DWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------   57 (169)
Q Consensus         2 ~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------   57 (169)
                      +|.++|++.       +.+|||||||+|     +|+.+|+.+++|||+|+.|++.|++++.                   
T Consensus        30 ~~~~~f~~~-------~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~  102 (213)
T 2fca_A           30 KWNTVFGND-------NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD  102 (213)
T ss_dssp             CHHHHHTSC-------CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH
T ss_pred             CHHHHcCCC-------CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh
Confidence            677788753       688999999999     7778899999999999999999987532                   


Q ss_pred             ----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCcc-ccc
Q psy13086         58 ----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLE-ELK  132 (169)
Q Consensus        58 ----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~-~~~  132 (169)
                          +++|.|++.|++||++..|++++++...++++++++|||||.|++.+|...+..++.+.+..++ |...... +..
T Consensus       103 ~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g-~~~~~~~~d~~  181 (213)
T 2fca_A          103 VFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG-LLLTYVSLDLH  181 (213)
T ss_dssp             HCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT-CEEEEEESSGG
T ss_pred             hcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCC-Ccccccccccc
Confidence                4688899999999999999999988899999999999999999999999999999999888775 4432111 111


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEecc
Q psy13086        133 RTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGR  167 (169)
Q Consensus       133 ~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~~  167 (169)
                       ..+  .+..+.|+||+++.++|++||+++|+|++
T Consensus       182 -~~~--~~~~~~t~~E~~~~~~G~~i~~~~~~~~~  213 (213)
T 2fca_A          182 -NSN--LEGNIMTEYEEKFSALGQPIYRAEVEWRT  213 (213)
T ss_dssp             -GSS--CTTCCCCTTGGGSSSSSCCCEEEEEECCC
T ss_pred             -ccc--CCCCCCcHHHHHHHHCCCCeEEEEEEECC
Confidence             122  35578899999999999999999999874

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.96  E-value=6.6e-29  Score=197.26  Aligned_cols=167  Identities=56%  Similarity=0.914  Sum_probs=128.2

Q ss_pred             CCCCccCCCCCC---CCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh-------------c--
Q psy13086          1 MDWSPLYPELKD---PTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW-------------S--   57 (169)
Q Consensus         1 ~~~~~~f~~~~~---~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~-------------~--   57 (169)
                      +||.++|++...   ..+.++.+|||||||+|     ++...|+.+|+|||+|+.|++.|++++             .  
T Consensus        30 ~~w~~~f~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv  109 (246)
T 2vdv_E           30 MDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNI  109 (246)
T ss_dssp             CCGGGTCGGGBC----CBSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTE
T ss_pred             CCHHHHhCcccccccccCCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcE
Confidence            589999987210   00123678999999999     677788889999999999999886531             1  


Q ss_pred             -----------------cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcC
Q psy13086         58 -----------------LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEH  120 (169)
Q Consensus        58 -----------------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~  120 (169)
                                       +++|.|.+.||+||++.+|++++++...+++++.++|||||.|++.++...+.+|+.+.+..+
T Consensus       110 ~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  189 (246)
T 2vdv_E          110 NVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEH  189 (246)
T ss_dssp             EEEECCTTSCGGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHS
T ss_pred             EEEeccHHHHHHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhC
Confidence                             356777888999999999999998899999999999999999999999999999999999999


Q ss_pred             CCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeccC
Q psy13086        121 PLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRGRH  168 (169)
Q Consensus       121 ~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~~~  168 (169)
                      +.|..+...... .++......+.|+||.++.++|.++|.++|+|+.+
T Consensus       190 ~~~~~~~~~~~~-~d~~~~~~~~~t~~e~k~~~~g~~~~~~~~~k~~~  236 (246)
T 2vdv_E          190 PLFERLSKEWEE-NDECVKIMRNATEEGKKVERKKGDKFVACFTRLPT  236 (246)
T ss_dssp             TTEEECCHHHHH-TCHHHHHHHHSSHHHHHHHHTTCCCEEEEEEECCC
T ss_pred             cCeEecCccccc-cCcccccCCCCCHHHHHHHHCCCCeEEEEEEECCC
Confidence            888876544321 11110122457999999999999999999999753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.95  E-value=5.1e-27  Score=182.27  Aligned_cols=153  Identities=20%  Similarity=0.281  Sum_probs=126.5

Q ss_pred             CCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------
Q psy13086          2 DWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------   57 (169)
Q Consensus         2 ~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------   57 (169)
                      +|.++|++.       +.+|||||||+|     ++..+|+.+++|||+|+.|++.|++++.                   
T Consensus        33 ~~~~~f~~~-------~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~  105 (214)
T 1yzh_A           33 KWRDLFGND-------NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD  105 (214)
T ss_dssp             THHHHHTSC-------CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG
T ss_pred             CHHHHcCCC-------CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh
Confidence            566677653       678999999999     7778899999999999999999987531                   


Q ss_pred             ----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCcc-ccc
Q psy13086         58 ----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLE-ELK  132 (169)
Q Consensus        58 ----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~-~~~  132 (169)
                          +++|.|.+.+|+||++.+|+++++....+++++.++|||||.+++.++...+..++.+.+.+++ |...... +..
T Consensus       106 ~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~d~~  184 (214)
T 1yzh_A          106 YFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYG-MKLNGVWLDLH  184 (214)
T ss_dssp             TSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHT-CEEEEEESSGG
T ss_pred             hcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCC-Ceeeecccccc
Confidence                4578899999999999999999888899999999999999999999999999988888888765 5443211 111


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEe
Q psy13086        133 RTDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRR  165 (169)
Q Consensus       133 ~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r  165 (169)
                       ..  .....+.|+||+++.++|++||+++|++
T Consensus       185 -~~--~~~~~~~t~~e~~~~~~g~~i~~~~~~~  214 (214)
T 1yzh_A          185 -AS--DFEGNVMTEYEQKFSNKGQVIYRVEAEF  214 (214)
T ss_dssp             -GS--CCCCCCCCHHHHHTGGGCCCCEEEEEEC
T ss_pred             -cc--CCCCCCCcHHHHHHHHCCCCeEEEEEEC
Confidence             11  1356789999999999999999999874

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.61  E-value=9e-16  Score=123.35  Aligned_cols=146  Identities=10%  Similarity=0.036  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCccc-----ccCcC--CCCcEEEEeCCHHHHHHHHHHhc--c---ccceEEE---eCCCCcccc------c
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF--PSTLILGLEIRVKVSDYVIDEWS--L---YLKKMFF---LYPDPHFKR------C   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~--p~~~v~GiDis~~~l~~a~~~~~--~---~~d~v~~---~f~d~~f~~------~   75 (169)
                      ++.+|||||||||     +++.+  |+++|+|||+|+.|++.|++++.  +   .++.+.-   .++.+.++.      .
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l  149 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL  149 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeee
Confidence            4789999999999     55553  57899999999999999998865  1   1111110   112222321      2


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEeC----ChHHHHHHHH---HHhcCCCceecCccccc-c-CCCCCCCCCCCCH
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTITD----VKDLHDWIVS---HFTEHPLFVECDLEELK-R-TDPVVDKLYQSTE  146 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d----~~~~~~~~~~---~~~~~~~f~~~~~~~~~-~-~~~~~~~~~~~T~  146 (169)
                      |+........+|++++|+|||||.|++...    .+....++..   .+....++......... . .+.  ....+..+
T Consensus       150 ~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~--~~~~s~~~  227 (261)
T 4gek_A          150 QFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENV--MLTDSVET  227 (261)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHH--CCCBCHHH
T ss_pred             eecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccc--ccCCCHHH
Confidence            222111124689999999999999998742    2222222221   11111222221100000 0 001  12345567


Q ss_pred             HHHHHHHcCCCeEEEEEE
Q psy13086        147 EGQKVTRNKGEKFCAVFR  164 (169)
Q Consensus       147 ye~~~~~~g~~i~~~~~~  164 (169)
                      +..+..+.|.....+.|+
T Consensus       228 ~~~~L~~AGF~~ve~~fq  245 (261)
T 4gek_A          228 HKARLHKAGFEHSELWFQ  245 (261)
T ss_dssp             HHHHHHHHTCSEEEEEEE
T ss_pred             HHHHHHHcCCCeEEEEEE
Confidence            788889999886655543

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.60  E-value=5.3e-16  Score=121.98  Aligned_cols=84  Identities=18%  Similarity=0.107  Sum_probs=58.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCC-HHHHHHH---HHHhc----------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIR-VKVSDYV---IDEWS----------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis-~~~l~~a---~~~~~----------------------~~~d~v~~~   66 (169)
                      +.+|||||||+|     +++..|+.+|+|||+| +.|++.|   ++++.                      ..++.+.+.
T Consensus        25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~  104 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISIL  104 (225)
T ss_dssp             SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEE
T ss_pred             CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEe
Confidence            678999999999     5666788999999999 7788877   54432                      122333344


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |+.+.  . +...+.....++++++|+|||||.+++++
T Consensus       105 ~~~~~--~-~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A          105 FPWGT--L-LEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             SCCHH--H-HHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCCcH--H-hhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            43322  1 11222234679999999999999999944

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.57  E-value=4e-15  Score=117.35  Aligned_cols=84  Identities=13%  Similarity=-0.028  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d   69 (169)
                      ++.+|||||||+|     +++..| .+++|||+|+.|++.|+++..                      +++|.|+.   |
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~---D  135 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY---D  135 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE---C
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE---e
Confidence            3679999999999     555555 489999999999999998654                      23444321   2


Q ss_pred             CcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .+....+.........++++++|+|||||+|.+.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            21111111111123679999999999999998853

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.57  E-value=1.8e-14  Score=112.00  Aligned_cols=146  Identities=12%  Similarity=0.127  Sum_probs=85.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCCC----Ccccc------cchhhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYPD----PHFKR------CKYKWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~d----~~f~~------~h~~~~   80 (169)
                      +.+|||||||+|     ++..+|+.+++|+|+|+.|++.|++++.  ..+..+...+.+    ..||.      .|+...
T Consensus        45 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  124 (234)
T 3dtn_A           45 NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLED  124 (234)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGSCH
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccCCH
Confidence            689999999999     6777889999999999999999998764  111111111100    12322      122111


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEeCC----hHHH----HHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHH
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTITDV----KDLH----DWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVT  152 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~d~----~~~~----~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~  152 (169)
                      .....++++++++|||||.+++.+..    ....    ......+. ...+......... ...-+...++..++.....
T Consensus       125 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~  202 (234)
T 3dtn_A          125 EDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVE-NSGLTEEEIAAGY-ERSKLDKDIEMNQQLNWLK  202 (234)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHH-TSSCCHHHHHTTC-----CCCCCBHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHH-hcCCCHHHHHHHH-HhcccccccCHHHHHHHHH
Confidence            11135999999999999999998632    1111    11111112 2233221111000 0001123456678888999


Q ss_pred             HcCCCeEEEEEEe
Q psy13086        153 RNKGEKFCAVFRR  165 (169)
Q Consensus       153 ~~g~~i~~~~~~r  165 (169)
                      +.|...-.+.++.
T Consensus       203 ~aGF~~v~~~~~~  215 (234)
T 3dtn_A          203 EAGFRDVSCIYKY  215 (234)
T ss_dssp             HTTCEEEEEEEEE
T ss_pred             HcCCCceeeeeee
Confidence            9999988777764

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.54  E-value=6.9e-14  Score=106.93  Aligned_cols=105  Identities=15%  Similarity=0.215  Sum_probs=72.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEE---eCC-----CCcccccchhhh-c
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFF---LYP-----DPHFKRCKYKWR-I   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~---~f~-----d~~f~~~h~~~~-~   81 (169)
                      ++.+|||||||+|     ++...|..+++|+|+|+.|++.|++++. ..++.+.+   ...     .+.||..-.... -
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~  119 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG  119 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCc
Confidence            3679999999999     6777888999999999999999998764 11222221   111     122332110000 0


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      ....+++++.++|||||.+++.+........+...+..++
T Consensus       120 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g  159 (204)
T 3e05_A          120 MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHG  159 (204)
T ss_dssp             CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCC
Confidence            1368999999999999999998877666666666666665

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.52  E-value=9e-15  Score=117.39  Aligned_cols=76  Identities=12%  Similarity=0.151  Sum_probs=55.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH--hc-------------cccceEEEeCCCCcccccch
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE--WS-------------LYLKKMFFLYPDPHFKRCKY   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~--~~-------------~~~d~v~~~f~d~~f~~~h~   77 (169)
                      ..+|||||||+|     ++...  .+|+|||+|+.|++.|+++  +.             +++|.|.....      .|+
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~------~h~  111 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQA------MHW  111 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSC------CTT
T ss_pred             CCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeee------hhH
Confidence            578999999999     55543  6899999999999988653  21             34444443222      232


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..   .+.++++++|+|||||.|.+.+
T Consensus       112 ~~---~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          112 FD---LDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             CC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hh---HHHHHHHHHHHcCCCCEEEEEE
Confidence            21   3679999999999999998875

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.48  E-value=1.4e-13  Score=102.31  Aligned_cols=104  Identities=13%  Similarity=0.105  Sum_probs=70.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc-eEEEe------CCC--Ccccccchhhhcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK-KMFFL------YPD--PHFKRCKYKWRII   82 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~~------f~d--~~f~~~h~~~~~~   82 (169)
                      +.+|||||||+|     ++..+|..+++|+|+|+.|++.|++++. ..++ .+.+.      +++  ..||.......+.
T Consensus        26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~~  105 (178)
T 3hm2_A           26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGLT  105 (178)
T ss_dssp             TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-TT
T ss_pred             CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCccc
Confidence            578999999999     6777788999999999999999998765 2222 22111      121  2343221111111


Q ss_pred             cHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      ...+++++.++|||||.+++.+............+..++
T Consensus       106 ~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~  144 (178)
T 3hm2_A          106 APGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFG  144 (178)
T ss_dssp             CTTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcC
Confidence            246999999999999999998876655555555555544

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.47  E-value=7.5e-14  Score=104.92  Aligned_cols=86  Identities=12%  Similarity=0.144  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe---------CCCCcccccchh---
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL---------YPDPHFKRCKYK---   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~---------f~d~~f~~~h~~---   78 (169)
                      ++.+|||||||+|     ++..  ..+|+|+|+|+.|++.|++++. ..++.+.+.         +++..||.....   
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~   99 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY   99 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence            3689999999999     5555  6799999999999999988764 111111110         111222211000   


Q ss_pred             ----------hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 ----------WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ----------~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                                ..-....+++++.++|||||.+++..
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  135 (185)
T 3mti_A          100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI  135 (185)
T ss_dssp             ----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence                      00012468899999999999999875

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.46  E-value=3.1e-13  Score=104.81  Aligned_cols=135  Identities=10%  Similarity=-0.003  Sum_probs=79.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEE----eCCCCccccc------chhhhcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFF----LYPDPHFKRC------KYKWRII   82 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~----~f~d~~f~~~------h~~~~~~   82 (169)
                      +.+|||||||+|     ++...  .+++|+|+|+.|++.|+++....++.+..    .+++..||..      |+...  
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~--  118 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD--  118 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS--
T ss_pred             CCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC--
Confidence            568999999999     55554  38999999999999999875311111110    0233344432      22211  


Q ss_pred             cHHHHHHHH-HhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec---CccccccCCCCCCCCCCCCHHHHHHHHcCCCe
Q psy13086         83 NQNLLSEYA-YVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC---DLEELKRTDPVVDKLYQSTEEGQKVTRNKGEK  158 (169)
Q Consensus        83 ~~~~l~~~~-rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i  158 (169)
                      ...++++++ |+|||||.+++.+..............  ..+...   .....   ...+....+..+++....+.|..+
T Consensus       119 ~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~Gf~~  193 (250)
T 2p7i_A          119 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKM--GIISHNSAVTEAEF---AHGHRCTYALDTLERDASRAGLQV  193 (250)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHT--TSSSSTTCCCHHHH---HTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHc--Cccccchhcccccc---cccccccCCHHHHHHHHHHCCCeE
Confidence            268999999 999999999998765443222222111  111110   00000   011123456677888888899887


Q ss_pred             EEE
Q psy13086        159 FCA  161 (169)
Q Consensus       159 ~~~  161 (169)
                      -..
T Consensus       194 ~~~  196 (250)
T 2p7i_A          194 TYR  196 (250)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.45  E-value=4.2e-13  Score=104.96  Aligned_cols=122  Identities=12%  Similarity=0.067  Sum_probs=76.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------cccceEEEeCCCCcccccch
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------LYLKKMFFLYPDPHFKRCKY   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------~~~d~v~~~f~d~~f~~~h~   77 (169)
                      +.+|||||||+|     ++..  +.+++|+|+|+.|++.|++++.               +++|.|.+...      .++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~------l~~  113 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHF------VEH  113 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESC------GGG
T ss_pred             CCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCc------hhh
Confidence            578999999999     4443  5689999999999999987633               34555543221      112


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCC
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGE  157 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~  157 (169)
                      ...-....++++++++|||||.+++.+............. .               .+-+.........+....+.|..
T Consensus       114 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~l~~~l~~aGf~  177 (240)
T 3dli_A          114 LDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFY-I---------------DPTHKKPVHPETLKFILEYLGFR  177 (240)
T ss_dssp             SCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHT-T---------------STTCCSCCCHHHHHHHHHHHTCE
T ss_pred             CCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHh-c---------------CccccccCCHHHHHHHHHHCCCe
Confidence            1110126899999999999999999875543222111110 0               01011223445667777777877


Q ss_pred             eEEEEE
Q psy13086        158 KFCAVF  163 (169)
Q Consensus       158 i~~~~~  163 (169)
                      +....+
T Consensus       178 ~~~~~~  183 (240)
T 3dli_A          178 DVKIEF  183 (240)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            655443

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.45  E-value=9.4e-14  Score=106.92  Aligned_cols=86  Identities=12%  Similarity=0.007  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc----------------ccceEEEe-----CCC-
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL----------------YLKKMFFL-----YPD-   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~----------------~~d~v~~~-----f~d-   69 (169)
                      ++.+|||||||+|     +++.  +.+|+|||+|+.|++.|+++...                .+..+...     +++ 
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~   99 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   99 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence            3689999999999     5554  56999999999999999887421                11111111     111 


Q ss_pred             Cccccc------chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         70 PHFKRC------KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        70 ~~f~~~------h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..||..      ++...-....++++++|+|||||++++.+
T Consensus       100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A          100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            223321      11110012468999999999999855543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.44  E-value=7.1e-13  Score=105.97  Aligned_cols=127  Identities=12%  Similarity=0.082  Sum_probs=78.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------cccceEEEeCCCCcccccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------LYLKKMFFLYPDPHFKRCK   76 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------~~~d~v~~~f~d~~f~~~h   76 (169)
                      ++.+|||||||+|     ++.  +..+++|+|+|+.|++.|+++.+               +++|.|.....      .|
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~------l~  128 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSNAM------LH  128 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEESC------GG
T ss_pred             CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEcch------hh
Confidence            3679999999999     333  77899999999999999998642               23344333221      11


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEeCCh----HHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHH
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTITDVK----DLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVT  152 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~----~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~  152 (169)
                      +..  ....++++++|+|||||.+++.+...    .....+...+...+. ...  .  . ..++  ......+++....
T Consensus       129 ~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~-~~~~--~~~~~~~~~~~l~  198 (279)
T 3ccf_A          129 WVK--EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGI-HNP--Q--A-LNPW--YFPSIGEYVNILE  198 (279)
T ss_dssp             GCS--CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTC-CCG--G--G-GCCC--CCCCHHHHHHHHH
T ss_pred             hCc--CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCC-ccc--c--C-cCce--eCCCHHHHHHHHH
Confidence            111  12579999999999999999976432    222222233322221 100  0  0 1121  3345667788888


Q ss_pred             HcCCCeEEE
Q psy13086        153 RNKGEKFCA  161 (169)
Q Consensus       153 ~~g~~i~~~  161 (169)
                      +.|..+-..
T Consensus       199 ~aGf~~~~~  207 (279)
T 3ccf_A          199 KQGFDVTYA  207 (279)
T ss_dssp             HHTEEEEEE
T ss_pred             HcCCEEEEE
Confidence            888776443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.44  E-value=2.8e-13  Score=106.77  Aligned_cols=92  Identities=16%  Similarity=0.234  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d   69 (169)
                      ++.+|||+|||+|     ++.. .|..+++|+|+|+.+++.|++++.                     .++|.|.+..++
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~~  172 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQ  172 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEECSSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEECCCC
Confidence            3679999999999     5566 678999999999999999988753                     224444433332


Q ss_pred             CcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      +             ..+++++.++|||||.+++.+...+......+.+.+++
T Consensus       173 ~-------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g  211 (255)
T 3mb5_A          173 P-------------ERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK  211 (255)
T ss_dssp             G-------------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred             H-------------HHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            2             35899999999999999998877666666666666665

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.44  E-value=8.1e-13  Score=101.91  Aligned_cols=102  Identities=13%  Similarity=0.037  Sum_probs=68.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc-eEEE---eCC-----CCcccccchhhhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK-KMFF---LYP-----DPHFKRCKYKWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~---~f~-----d~~f~~~h~~~~~   81 (169)
                      ++.+|||||||+|     ++..  ..+|+|+|+|+.|++.|++++. ..++ .+.+   ...     .+.||..-....+
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~  132 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG  132 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence            4678999999999     4444  6799999999999999998764 1122 2221   111     1233322111111


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      ... +++++.++|||||++++.+...+......+.+.+++
T Consensus       133 ~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g  171 (204)
T 3njr_A          133 SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHG  171 (204)
T ss_dssp             CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred             cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCC
Confidence            124 999999999999999999877766666666666654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.43  E-value=4.1e-13  Score=106.60  Aligned_cols=100  Identities=10%  Similarity=0.141  Sum_probs=68.7

Q ss_pred             CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeC
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLY   67 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f   67 (169)
                      .++.+|||+|||+|     +|... |+..|+|+|+|+.|++.|+++..                      .++|.+++.+
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~  155 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADV  155 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEec
Confidence            44799999999999     66553 77899999999999999987643                      3344444333


Q ss_pred             CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe---------CChHHHHHHHHHHhcCCCceec
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT---------DVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~---------d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      +.|+.          ...++++++++|||||.++++.         +.+..+....+.+.+. +|+..
T Consensus       156 ~~~~~----------~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~-GF~l~  212 (233)
T 4df3_A          156 AQPEQ----------AAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDG-GLEIK  212 (233)
T ss_dssp             CCTTH----------HHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHT-TCCEE
T ss_pred             cCChh----------HHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHC-CCEEE
Confidence            32210          2468999999999999999863         2223344344555544 46554

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.43  E-value=2.6e-13  Score=107.75  Aligned_cols=87  Identities=16%  Similarity=0.209  Sum_probs=61.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c----ccceEE-----EeCCCCcccccchh---
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L----YLKKMF-----FLYPDPHFKRCKYK---   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~----~~d~v~-----~~f~d~~f~~~h~~---   78 (169)
                      ++.+|||||||+|     ++.. +..+++|+|+|+.|++.|++++. .    .++.+.     +.+++..||.....   
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~  124 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI  124 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCG
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCc
Confidence            3689999999999     5555 77899999999999999998764 1    122221     22334445532110   


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..+....+++++.++|||||.+++.+
T Consensus       125 ~~~~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          125 YNIGFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             GGTCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             eecCHHHHHHHHHHHcCCCCEEEEEE
Confidence            11123689999999999999999975

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.43  E-value=4e-13  Score=107.63  Aligned_cols=136  Identities=10%  Similarity=-0.012  Sum_probs=78.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c----ccceEEE-----e-CCCCccccc------
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L----YLKKMFF-----L-YPDPHFKRC------   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~----~~d~v~~-----~-f~d~~f~~~------   75 (169)
                      +.+|||||||+|     ++..  +.+++|+|+|+.|++.|++++. .    .+..+..     . +++..||..      
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  146 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL  146 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred             CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence            578999999999     4444  6799999999999999998754 1    1111110     1 223334421      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec----CccccccCCCCCCCCCCCCHHHHHH
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC----DLEELKRTDPVVDKLYQSTEEGQKV  151 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~----~~~~~~~~~~~~~~~~~~T~ye~~~  151 (169)
                      ++..  ....++++++++|||||.+++.+.......+.. ...  ..+...    +... . ....+.......+.+...
T Consensus       147 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~l  219 (285)
T 4htf_A          147 EWVA--DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHN-MVA--GNFDYVQAGMPKKK-K-RTLSPDYPRDPTQVYLWL  219 (285)
T ss_dssp             GGCS--CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHH-HHT--TCHHHHHTTCCCC------CCCSCCBCHHHHHHHH
T ss_pred             hccc--CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHH-HHh--cCHHHHhhhccccc-c-ccCCCCCCCCHHHHHHHH
Confidence            1111  126799999999999999999876554322111 111  001100    0000 0 000012335567778888


Q ss_pred             HHcCCCeEEEE
Q psy13086        152 TRNKGEKFCAV  162 (169)
Q Consensus       152 ~~~g~~i~~~~  162 (169)
                      .+.|..+-...
T Consensus       220 ~~aGf~v~~~~  230 (285)
T 4htf_A          220 EEAGWQIMGKT  230 (285)
T ss_dssp             HHTTCEEEEEE
T ss_pred             HHCCCceeeee
Confidence            88999875543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.43  E-value=1.8e-13  Score=107.06  Aligned_cols=86  Identities=17%  Similarity=0.105  Sum_probs=55.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc---ccceEE-----E--eCCCCcccccch-----
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL---YLKKMF-----F--LYPDPHFKRCKY-----   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~---~~d~v~-----~--~f~d~~f~~~h~-----   77 (169)
                      +.+|||||||+|     ++.. +..+++|+|+|+.|++.|+++...   .+..+.     +  .+++..||....     
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~  139 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  139 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc
Confidence            578999999999     4333 334899999999999999987630   011000     1  233333332211     


Q ss_pred             -hhhc---ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         78 -KWRI---INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        78 -~~~~---~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       ....   ....++++++|+|||||.|++.+
T Consensus       140 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          140 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence             0000   01367999999999999998753

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.43  E-value=2.5e-13  Score=105.51  Aligned_cols=78  Identities=12%  Similarity=0.117  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d   69 (169)
                      ++.+|||||||+|     ++...+..+|+|+|+|+.|++.+.++..                      +++|.|....+.
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~  136 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQ  136 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCS
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEeccC
Confidence            3679999999999     5556666799999999987654433221                      123333332211


Q ss_pred             CcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +       .   ....++++++|+|||||.|++..
T Consensus       137 ~-------~---~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          137 K-------N---QIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             T-------T---HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             h-------h---HHHHHHHHHHHHhCCCCEEEEEE
Confidence            1       0   01246899999999999999974

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.43  E-value=1.9e-13  Score=107.38  Aligned_cols=80  Identities=15%  Similarity=0.185  Sum_probs=59.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------cccceEEEeCCCCcccccch
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------LYLKKMFFLYPDPHFKRCKY   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------~~~d~v~~~f~d~~f~~~h~   77 (169)
                      +.+|||||||+|     ++..+|..+++|+|+|+.|++.|+++.+               +++|.|.....      .|+
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~------l~~  107 (259)
T 2p35_A           34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYANAV------FQW  107 (259)
T ss_dssp             CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEESC------GGG
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEeCc------hhh
Confidence            678999999999     6666788899999999999999988632               23343333221      122


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      ..  ....++++++++|||||.+++.+.
T Consensus       108 ~~--~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A          108 VP--DHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             ST--THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             CC--CHHHHHHHHHHhcCCCeEEEEEeC
Confidence            11  136799999999999999999863

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.42  E-value=4.8e-13  Score=107.56  Aligned_cols=87  Identities=16%  Similarity=0.250  Sum_probs=61.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhcc---ccceEE-----EeCCCCcccccc------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWSL---YLKKMF-----FLYPDPHFKRCK------   76 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~~---~~d~v~-----~~f~d~~f~~~h------   76 (169)
                      ++.+|||||||+|     ++..+|. .+++|+|+|+.|++.|++++..   .+..+.     +.++ ..||..+      
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~  100 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLL  100 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCGG
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECChhh
Confidence            3689999999999     7777884 8999999999999999987541   111111     1121 2344221      


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      +..  ....++++++++|||||.+++.+..
T Consensus       101 ~~~--~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A          101 HMT--TPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             GCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCC--CHHHHHHHHHHHcCCCCEEEEEecc
Confidence            111  1268999999999999999988655

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.42  E-value=2.4e-13  Score=111.32  Aligned_cols=93  Identities=11%  Similarity=0.105  Sum_probs=61.3

Q ss_pred             CCeEEEEcCccc--ccC--cCCCCcEEEEeCCHHHHHHHHHHhcc-c---------cceEE--E-----------eCCCC
Q psy13086         18 KVEFVDVGCGKL--YLP--MFPSTLILGLEIRVKVSDYVIDEWSL-Y---------LKKMF--F-----------LYPDP   70 (169)
Q Consensus        18 ~~~iLDiGCG~G--la~--~~p~~~v~GiDis~~~l~~a~~~~~~-~---------~d~v~--~-----------~f~d~   70 (169)
                      +.+|||||||+|  +..  .....+|+|||+|+.||+.|+++... .         ++-..  +           .+++.
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~  128 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG  128 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred             CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence            578999999999  221  22346899999999999999987541 1         11000  0           13344


Q ss_pred             ccccc------chhhh-cccHHHHHHHHHhccCCcEEEEEeCChHHH
Q psy13086         71 HFKRC------KYKWR-IINQNLLSEYAYVLSEGGIVYTITDVKDLH  110 (169)
Q Consensus        71 ~f~~~------h~~~~-~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~  110 (169)
                      .||..      |+... .....++++++|+|||||.|++.+......
T Consensus       129 ~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~  175 (302)
T 2vdw_A          129 KFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKL  175 (302)
T ss_dssp             CEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             CeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            55532      22100 012689999999999999999988765443

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.42  E-value=3.9e-13  Score=105.63  Aligned_cols=87  Identities=14%  Similarity=0.258  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc----cceEE-----EeCCCCcccccchh---
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY----LKKMF-----FLYPDPHFKRCKYK---   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~----~d~v~-----~~f~d~~f~~~h~~---   78 (169)
                      ++.+|||||||+|     ++...+. +++|+|+|+.|++.|++++. ..    +..+.     +.+++..||.....   
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  124 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI  124 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChH
Confidence            3679999999999     6666664 99999999999999988754 11    22111     22334445532110   


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..+....+++++.++|||||.+++.+
T Consensus       125 ~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          125 YNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             CCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            01123689999999999999999985

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.42  E-value=7.8e-13  Score=106.09  Aligned_cols=107  Identities=12%  Similarity=0.050  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc-c-ccceEEEe-------CCCCcccccchhhhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS-L-YLKKMFFL-------YPDPHFKRCKYKWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~-~-~~d~v~~~-------f~d~~f~~~h~~~~~   81 (169)
                      ++.+|||+|||+|     +++. .|..+++|+|+|+.+++.|++++. . ..+.+.+.       +++..||..-... -
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~~~-~  188 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADI-P  188 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECC-S
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEEcC-c
Confidence            3679999999999     5555 678899999999999999988753 1 12222211       1112233211000 0


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                      ....+++++.++|||||.+++.+........+.+.+...+ |..
T Consensus       189 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~G-f~~  231 (275)
T 1yb2_A          189 DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASG-MHH  231 (275)
T ss_dssp             CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGT-EEE
T ss_pred             CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCC-CeE
Confidence            0136899999999999999999887765555666666543 544

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.42  E-value=4.8e-13  Score=103.03  Aligned_cols=89  Identities=12%  Similarity=0.021  Sum_probs=58.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c--------ccceEEEeC-----CCCccccc---
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L--------YLKKMFFLY-----PDPHFKRC---   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~--------~~d~v~~~f-----~d~~f~~~---   75 (169)
                      ..+|||||||+|     ++...+..+++|+|+|+.|++.|++++. .        .++.+....     ++..||..   
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  109 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVI  109 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeH
Confidence            579999999999     6666777899999999999999998753 0        122111111     11223321   


Q ss_pred             ---chhhhcccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         76 ---KYKWRIINQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        76 ---h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                         ++...-....+++++.++|||||.+++ ++..
T Consensus       110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~li~-~~~~  143 (217)
T 3jwh_A          110 EVIEHLDLSRLGAFERVLFEFAQPKIVIVT-TPNI  143 (217)
T ss_dssp             SCGGGCCHHHHHHHHHHHHTTTCCSEEEEE-EEBH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHcCCCEEEEE-ccCc
Confidence               111110125799999999999996655 4443

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.42  E-value=4.1e-13  Score=106.10  Aligned_cols=84  Identities=15%  Similarity=0.170  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c--------ccceEEEeCCCCccccc------c
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L--------YLKKMFFLYPDPHFKRC------K   76 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~--------~~d~v~~~f~d~~f~~~------h   76 (169)
                      +..+|||||||+|     ++...  .+++|+|+|+.|++.|++++. .        ..|...+.+++..||..      |
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH  114 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence            3679999999999     55554  399999999999999988753 1        11111234555556542      2


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +..  ....++++++|+|||||.|++.+
T Consensus       115 ~~~--d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          115 HFP--NPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             GCS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcC--CHHHHHHHHHHHcCCCCEEEEEE
Confidence            221  12689999999999999999974

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.42  E-value=5.4e-13  Score=102.71  Aligned_cols=86  Identities=12%  Similarity=0.043  Sum_probs=57.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c--------ccceEEEe-----CCCCccccc---
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L--------YLKKMFFL-----YPDPHFKRC---   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~--------~~d~v~~~-----f~d~~f~~~---   75 (169)
                      ..+|||||||+|     ++...|..+++|+|+|+.|++.|++++. .        .++.+...     +++..||..   
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~  109 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI  109 (219)
T ss_dssp             CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEH
Confidence            579999999999     6677777899999999999999998753 1        22222111     112233321   


Q ss_pred             ---chhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         76 ---KYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        76 ---h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                         ++...-....++++++++|||||.+++.
T Consensus       110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A          110 EVIEHLDENRLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             SCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             HHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence               1111101147999999999999966543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.41  E-value=3.1e-13  Score=106.12  Aligned_cols=84  Identities=12%  Similarity=0.039  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c----ccceEEE-----eCCCCccccc------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L----YLKKMFF-----LYPDPHFKRC------   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~----~~d~v~~-----~f~d~~f~~~------   75 (169)
                      ++.+|||||||+|     ++... +.+++|+|+|+.|++.|++++. .    .++.+..     .+ +..||..      
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~  113 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGAT  113 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESCG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCCh
Confidence            3679999999999     55555 5699999999999999988764 1    1221111     12 3344432      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |+..  ....++++++|+|||||.+++.+
T Consensus       114 ~~~~--~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          114 WIAG--GFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             GGTS--SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             HhcC--CHHHHHHHHHHHcCCCeEEEEec
Confidence            1211  13789999999999999999974

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.41  E-value=2e-12  Score=102.47  Aligned_cols=99  Identities=12%  Similarity=0.081  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-c------------------------ccceEEE
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-L------------------------YLKKMFF   65 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~------------------------~~d~v~~   65 (169)
                      +..+|||||||+|     ++...| +.+|+|+|+|+.+++.|++++. .                        ++|.|++
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~  142 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI  142 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence            3678999999999     777777 7899999999999999988754 1                        3333332


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCCh--------------HHHHHHHHHHhcCCCceec
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVK--------------DLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~--------------~~~~~~~~~~~~~~~f~~~  126 (169)
                      ..+         ..  ....+++++.++|||||.+++.+-..              .....+.+.+..++.|...
T Consensus       143 d~~---------~~--~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  206 (248)
T 3tfw_A          143 DAD---------KP--NNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTAT  206 (248)
T ss_dssp             CSC---------GG--GHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             CCc---------hH--HHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEE
Confidence            111         00  12579999999999999998753211              1123344555667777653

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.41  E-value=7.4e-13  Score=108.52  Aligned_cols=89  Identities=11%  Similarity=0.039  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEE------eCCCCcccccchhhhc-c
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFF------LYPDPHFKRCKYKWRI-I   82 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~------~f~d~~f~~~h~~~~~-~   82 (169)
                      .++.+|||||||+|     +..+.++++|+|||+|+.|++.|+++++ ..++.+.+      .+++..||.....-.. .
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~~d  200 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALAEP  200 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTCSC
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCccC
Confidence            34789999999998     2234578999999999999999998765 11233322      1233344432110000 1


Q ss_pred             cHHHHHHHHHhccCCcEEEEEe
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..++++++.|+|||||+|++.+
T Consensus       201 ~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          201 KRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEEc
Confidence            2579999999999999999876

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.40  E-value=1.5e-12  Score=100.02  Aligned_cols=127  Identities=12%  Similarity=0.076  Sum_probs=76.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------cccceEEEeCCCCcccccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------LYLKKMFFLYPDPHFKRCK   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------~~~d~v~~~f~d~~f~~~h   76 (169)
                      +.+|||||||+|     ++..  +.+++|+|+|+.|++.|+++++                +++|.|.+...      .|
T Consensus        46 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~------l~  117 (220)
T 3hnr_A           46 FGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYA------FH  117 (220)
T ss_dssp             CSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEESC------GG
T ss_pred             CCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEECcc------hh
Confidence            678999999999     4443  5799999999999999998753                22333332211      12


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEeC---ChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHH
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTITD---VKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTR  153 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d---~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~  153 (169)
                      +........++++++++|||||.+++.+.   ...........+...+ |.........      ....+..+++....+
T Consensus       118 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~l~~  190 (220)
T 3hnr_A          118 HLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRG-FHQLANDLQT------EYYTRIPVMQTIFEN  190 (220)
T ss_dssp             GSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTT-CHHHHHHHHH------SCCCBHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCC-Cccchhhcch------hhcCCHHHHHHHHHH
Confidence            21111113499999999999999999853   2222322333333222 2221111111      112356678888888


Q ss_pred             cCCCeE
Q psy13086        154 NKGEKF  159 (169)
Q Consensus       154 ~g~~i~  159 (169)
                      .|..+-
T Consensus       191 aGf~v~  196 (220)
T 3hnr_A          191 NGFHVT  196 (220)
T ss_dssp             TTEEEE
T ss_pred             CCCEEE
Confidence            998664

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.40  E-value=3.5e-13  Score=107.25  Aligned_cols=88  Identities=17%  Similarity=0.259  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEE--------EeCCCCcccccchhh---
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMF--------FLYPDPHFKRCKYKW---   79 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~--------~~f~d~~f~~~h~~~---   79 (169)
                      ++.+|||||||+|     ++...|+.+++|+|+|+.|++.|++++. ..++.+.        +.+++..||......   
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  116 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLE  116 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGG
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhh
Confidence            4689999999999     6677888999999999999999998754 1111111        223444455322110   


Q ss_pred             hc-ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         80 RI-INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        80 ~~-~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .+ ....++++++++|||||.+++.+
T Consensus       117 ~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          117 HLQSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             GCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            00 12589999999999999999975

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.40  E-value=3.6e-13  Score=108.73  Aligned_cols=129  Identities=12%  Similarity=0.062  Sum_probs=78.2

Q ss_pred             CCeEEEEcCccc-c--------cCcCCCCcE--EEEeCCHHHHHHHHHHhc--cccceEEE----------e------CC
Q psy13086         18 KVEFVDVGCGKL-Y--------LPMFPSTLI--LGLEIRVKVSDYVIDEWS--LYLKKMFF----------L------YP   68 (169)
Q Consensus        18 ~~~iLDiGCG~G-l--------a~~~p~~~v--~GiDis~~~l~~a~~~~~--~~~d~v~~----------~------f~   68 (169)
                      +.+|||||||+| +        +..+|+..+  +|+|+|++|++.|++++.  ..++.+.+          .      |+
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE  132 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence            568999999999 2        234577754  999999999999998764  12222211          1      34


Q ss_pred             CCccccc------chhhhcccHHHHHHHHHhccCCcEEEEEeCCh--HHHHHHHHHHhcCCCceecCccccccCCCCCCC
Q psy13086         69 DPHFKRC------KYKWRIINQNLLSEYAYVLSEGGIVYTITDVK--DLHDWIVSHFTEHPLFVECDLEELKRTDPVVDK  140 (169)
Q Consensus        69 d~~f~~~------h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~--~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  140 (169)
                      +..||..      |+...  ...++++++|+|||||.|++.....  .+...........+      ...       +..
T Consensus       133 ~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~------~~~-------~~~  197 (292)
T 2aot_A          133 LQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFP------QDD-------LCQ  197 (292)
T ss_dssp             CCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSC------CCT-------TCC
T ss_pred             CCceeEEEEeeeeeecCC--HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhcc------CCC-------ccc
Confidence            5556643      22221  3679999999999999999875322  22221111111111      000       012


Q ss_pred             CCCCCHHHHHHHHcCCCeEEE
Q psy13086        141 LYQSTEEGQKVTRNKGEKFCA  161 (169)
Q Consensus       141 ~~~~T~ye~~~~~~g~~i~~~  161 (169)
                      ..+..+++....+.|..+...
T Consensus       198 ~~~~~~~~~~l~~aGf~~~~~  218 (292)
T 2aot_A          198 YITSDDLTQMLDNLGLKYECY  218 (292)
T ss_dssp             CCCHHHHHHHHHHHTCCEEEE
T ss_pred             CCCHHHHHHHHHHCCCceEEE
Confidence            344567788888888877543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.40  E-value=3.1e-13  Score=102.51  Aligned_cols=87  Identities=18%  Similarity=0.230  Sum_probs=58.4

Q ss_pred             CCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYP   68 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~   68 (169)
                      +.+|||+|||+|     ++... |..+++|+|+|+.|++.|++++.                       .++|.|.+..+
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  102 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG  102 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence            679999999999     55554 66799999999999999987643                       23444443321


Q ss_pred             C-CcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         69 D-PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        69 d-~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      - |..+.......-....+++++.++|||||.+++.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A          103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            1 11110000000012469999999999999999885

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=1.9e-12  Score=101.28  Aligned_cols=82  Identities=16%  Similarity=0.203  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c----------------------ccceEEEeCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L----------------------YLKKMFFLYP   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~----------------------~~d~v~~~f~   68 (169)
                      ++.+|||||||+|     ++...+  +|+|+|+|+.|++.|+++.. .                      .+|.|.....
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~  133 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG  133 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence            3678999999999     666655  89999999999999988653 0                      1344443322


Q ss_pred             CCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         69 DPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        69 d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      -      |+...-....++++++++|||||.+++.+..
T Consensus       134 ~------~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          134 F------HHIPVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             S------TTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             h------hcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            1      1111111258999999999999998887643

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.39  E-value=2.7e-13  Score=104.46  Aligned_cols=85  Identities=15%  Similarity=0.061  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH----hc-cccceEE--------EeCCCCccccc---
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE----WS-LYLKKMF--------FLYPDPHFKRC---   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~----~~-~~~d~v~--------~~f~d~~f~~~---   75 (169)
                      ++.+|||||||+|     ++..+|+.+|+|+|+|+.|++.+.++    .. ..++.+.        +.+++.. +..   
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~  105 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL  105 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence            3678999999999     77788899999999999988864322    11 1111111        1122111 110   


Q ss_pred             --------chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 --------KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 --------h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                              |+..  ....++++++++|||||.+++..
T Consensus       106 ~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          106 MPWGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             SCCHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccchhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEe
Confidence                    1111  12679999999999999999964

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.39  E-value=2.5e-13  Score=103.26  Aligned_cols=88  Identities=13%  Similarity=0.084  Sum_probs=50.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEEeCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFFLYP   68 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~~f~   68 (169)
                      +.+|||+|||+|     ++...|+.+++|+|+|+.|++.|++++.                        +++|.|....|
T Consensus        31 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp  110 (215)
T 4dzr_A           31 GTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPP  110 (215)
T ss_dssp             TEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEECCC
T ss_pred             CCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEECCC
Confidence            679999999999     6677788899999999999999876532                        35777665322


Q ss_pred             CCcccccchhhhc------------------ccHHHHHHHHHhccCCcE-EEEEeC
Q psy13086         69 DPHFKRCKYKWRI------------------INQNLLSEYAYVLSEGGI-VYTITD  105 (169)
Q Consensus        69 d~~f~~~h~~~~~------------------~~~~~l~~~~rvLkpGG~-l~i~~d  105 (169)
                      --.....++....                  ....+++++.++|||||. +++...
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          111 YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             CCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            1111110000000                  016789999999999999 666544

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.39  E-value=6.3e-13  Score=104.47  Aligned_cols=88  Identities=10%  Similarity=0.063  Sum_probs=60.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceE-----EEeCCCCccccc------chhhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKM-----FFLYPDPHFKRC------KYKWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v-----~~~f~d~~f~~~------h~~~~   80 (169)
                      +.+|||||||+|     ++...+. +++|+|+|+.|++.|+++.. ..++.+     .+.+++..||..      ++.. 
T Consensus        45 ~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-  122 (253)
T 3g5l_A           45 QKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA-  122 (253)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS-
T ss_pred             CCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh-
Confidence            689999999999     4444333 99999999999999998753 111111     122333344421      2211 


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTITDVKD  108 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~d~~~  108 (169)
                       ....++++++++|||||.+++.+..+.
T Consensus       123 -~~~~~l~~~~~~LkpgG~l~~~~~~~~  149 (253)
T 3g5l_A          123 -SFDDICKKVYINLKSSGSFIFSVEHPV  149 (253)
T ss_dssp             -CHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             -hHHHHHHHHHHHcCCCcEEEEEeCCCc
Confidence             136899999999999999999875543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.39  E-value=3.2e-13  Score=108.64  Aligned_cols=39  Identities=10%  Similarity=-0.072  Sum_probs=31.9

Q ss_pred             CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      +.+|||||||+|    ++...+..+|+|+|+|+.|++.|++++
T Consensus        72 ~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~  114 (289)
T 2g72_A           72 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWL  114 (289)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHH
Confidence            678999999999    333334579999999999999998753

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.39  E-value=6.8e-13  Score=101.45  Aligned_cols=81  Identities=15%  Similarity=0.096  Sum_probs=58.1

Q ss_pred             CCeEEEEcCccc-ccCcCCCC-cEEEEeCCHHHHHHHHHHhc----------------cccceEEEeCCCCcccccchhh
Q psy13086         18 KVEFVDVGCGKL-YLPMFPST-LILGLEIRVKVSDYVIDEWS----------------LYLKKMFFLYPDPHFKRCKYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~~~p~~-~v~GiDis~~~l~~a~~~~~----------------~~~d~v~~~f~d~~f~~~h~~~   79 (169)
                      +.+|||||||+| ++... +. +++|+|+|+.|++.|+++..                +++|.|.+...-      |+..
T Consensus        37 ~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l------~~~~  109 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTL------EFVE  109 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCT------TTCS
T ss_pred             CCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChh------hhcC
Confidence            679999999999 33333 45 99999999999999998742                234444332211      1111


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                        ....++++++++|||||.+++.+...
T Consensus       110 --~~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A          110 --DVERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             --CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             --CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence              13689999999999999999987543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.39  E-value=3.8e-13  Score=108.95  Aligned_cols=41  Identities=15%  Similarity=0.306  Sum_probs=36.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|||||||+|     ++..++..+|+|||+|+.|++.|++++.
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~   91 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIR   91 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHH
Confidence            3678999999999     7778888999999999999999988754

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.39  E-value=8.2e-13  Score=106.87  Aligned_cols=83  Identities=12%  Similarity=0.181  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEe-----C
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFL-----Y   67 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~-----f   67 (169)
                      ++.+|||||||+|     +++.++ .+|+|+|+|+.|++.|++++.                   +++|.|...     +
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~~~~~  150 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHF  150 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGT
T ss_pred             CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEEEcchHHhc
Confidence            3679999999999     555655 799999999999999998754                   234444332     1


Q ss_pred             CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +||+-..    ..-....+++++.++|||||.+++.+
T Consensus       151 ~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          151 ADGAGDA----GFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             TCCSSCC----CTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             Ccccccc----chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            1211000    00012589999999999999999975

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.39  E-value=3.9e-12  Score=98.27  Aligned_cols=76  Identities=11%  Similarity=0.014  Sum_probs=57.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-c--------------------------ccceE
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-L--------------------------YLKKM   63 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~--------------------------~~d~v   63 (169)
                      ++.+|||||||+|     ++...| +.+++|+|+++.+++.|++++. .                          ++|.|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v  137 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI  137 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence            3678999999999     777777 7899999999999999987654 1                          13433


Q ss_pred             EEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         64 FFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        64 ~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ++..+.         .  ....+++++.++|||||.+++.
T Consensus       138 ~~d~~~---------~--~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          138 FIDADK---------Q--NNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             EECSCG---------G--GHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EEcCCc---------H--HHHHHHHHHHHhcCCCcEEEEe
Confidence            322110         0  1257999999999999988875

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.39  E-value=6.4e-13  Score=106.13  Aligned_cols=86  Identities=13%  Similarity=0.015  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc------------------ccceEEE--------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL------------------YLKKMFF--------   65 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~------------------~~d~v~~--------   65 (169)
                      ++.+|||||||+|     ||..  +.+|+|||+|+.|++.|+++...                  ....+.+        
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4689999999999     4444  56999999999999999865420                  0011111        


Q ss_pred             eCCC-Ccccccc------hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         66 LYPD-PHFKRCK------YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        66 ~f~d-~~f~~~h------~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .+++ ..||..-      +...-....++++++++|||||+|++.+
T Consensus       146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            1221 3344321      1111012579999999999999997654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.38  E-value=4.4e-12  Score=98.57  Aligned_cols=84  Identities=19%  Similarity=0.230  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceE-----EEeCCCCccccc------chhh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKM-----FFLYPDPHFKRC------KYKW   79 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v-----~~~f~d~~f~~~------h~~~   79 (169)
                      ++.+|||||||+|     ++..  +.+++|+|+|+.|++.|+++.. ..++.+     .+.+++..||..      |+..
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  130 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE  130 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence            3679999999999     4443  5699999999999999987632 111111     122333334421      1111


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        ....++++++++|||||.+++.+
T Consensus       131 --~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          131 --EPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             --CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --CHHHHHHHHHHHhCCCeEEEEEE
Confidence              12579999999999999999986

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=9e-13  Score=100.21  Aligned_cols=79  Identities=15%  Similarity=0.106  Sum_probs=57.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------cccceEEEeCCCCcccccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------LYLKKMFFLYPDPHFKRCK   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------~~~d~v~~~f~d~~f~~~h   76 (169)
                      +.+|||||||+|     ++..  +.+++|+|+|+.|++.|+++.+                +++|.|.+...-.      
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~------  113 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLI------  113 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSST------
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHh------
Confidence            578999999999     4443  5699999999999999998643                3455554432211      


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +...-....++++++++|||||.+++.+
T Consensus       114 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~  141 (203)
T 3h2b_A          114 HMGPGELPDALVALRMAVEDGGGLLMSF  141 (203)
T ss_dssp             TCCTTTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            1111123689999999999999999976

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.38  E-value=4.9e-13  Score=102.66  Aligned_cols=86  Identities=15%  Similarity=0.171  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-cc---cceEE-----EeCCCCccccc------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-LY---LKKMF-----FLYPDPHFKRC------   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~~---~d~v~-----~~f~d~~f~~~------   75 (169)
                      ++.+|||||||+|     ++... |..+++|+|+|+.|++.|++++. ..   +..+.     +.+++..||..      
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  116 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTF  116 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCG
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhh
Confidence            3679999999999     55554 77899999999999999988754 11   11111     12333334421      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ++..  ....++++++++|||||.+++.+
T Consensus       117 ~~~~--~~~~~l~~~~~~LkpgG~l~i~~  143 (219)
T 3dh0_A          117 HELS--EPLKFLEELKRVAKPFAYLAIID  143 (219)
T ss_dssp             GGCS--SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcC--CHHHHHHHHHHHhCCCeEEEEEE
Confidence            1111  12679999999999999999975

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.38  E-value=3.5e-13  Score=102.92  Aligned_cols=108  Identities=17%  Similarity=0.023  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc---cceEEEe---CCCCcccccchhhhc-cc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY---LKKMFFL---YPDPHFKRCKYKWRI-IN   83 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~---~d~v~~~---f~d~~f~~~h~~~~~-~~   83 (169)
                      ++.+|||||||+|     ++. .+..+++|+|+|+.|++.|++++. ..   +..+...   +++..||......-+ ..
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~~  138 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEIL  138 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHHH
Confidence            3679999999999     333 466799999999999999998765 11   2211111   122233321110000 02


Q ss_pred             HHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086         84 QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      ..+++++.++|||||.+++.+........+...+...+ |+..
T Consensus       139 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~G-f~~~  180 (205)
T 3grz_A          139 LDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENS-FQID  180 (205)
T ss_dssp             HHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEE
T ss_pred             HHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcC-CceE
Confidence            57899999999999999997654444444555555543 5543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.38  E-value=7.6e-13  Score=107.41  Aligned_cols=87  Identities=14%  Similarity=0.106  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCccc-----cc-CcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEE-----EeCCCCccccc-----
Q psy13086         17 KKVEFVDVGCGKL-----YL-PMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMF-----FLYPDPHFKRC-----   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la-~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~-----~~f~d~~f~~~-----   75 (169)
                      ++.+|||||||+|     ++ ...|+.+++|+|+|+.|++.|++++.     ..+..+.     +.++ ..||..     
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~  196 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGL  196 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSS
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECCh
Confidence            3688999999999     44 46788999999999999999998764     1121111     1122 233321     


Q ss_pred             -chhh-hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 -KYKW-RIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 -h~~~-~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       ++.. ......++++++++|||||.+++.+
T Consensus       197 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          197 NIYEPDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence             1110 0001348999999999999999975

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.38  E-value=5e-13  Score=105.03  Aligned_cols=87  Identities=13%  Similarity=0.106  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc--ccceEE-----EeCCCCcccc------cchh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL--YLKKMF-----FLYPDPHFKR------CKYK   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~--~~d~v~-----~~f~d~~f~~------~h~~   78 (169)
                      ++.+|||||||+|     ++..+ +.+++|+|+|+.|++.|++++..  .+..+.     +.+++..||.      .|+.
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  133 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILAL  133 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGS
T ss_pred             CCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhc
Confidence            3679999999999     55554 67999999999999999987641  111111     1333444543      2222


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..-....++++++++|||||.+++.+
T Consensus       134 ~~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          134 SLENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            00113679999999999999999975

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.37  E-value=4.2e-12  Score=97.37  Aligned_cols=137  Identities=9%  Similarity=0.067  Sum_probs=83.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----cccceEEEeCCCCccccc------chhhhcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----LYLKKMFFLYPDPHFKRC------KYKWRII   82 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----~~~d~v~~~f~d~~f~~~------h~~~~~~   82 (169)
                      +.+|||||||+|     ++.. + .+++|+|+|+.|++.|+++..    ..+......+++..||..      ++...  
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~--  108 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFD--  108 (230)
T ss_dssp             CSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSC--
T ss_pred             CCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCC--
Confidence            679999999999     4555 4 799999999999999987643    111111122333334321      12111  


Q ss_pred             cHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCeEEEE
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCAV  162 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i~~~~  162 (169)
                      ...++++++++|||||.+++.++...........+.  ..+.......   ..+.+....+..+++....+.|..+....
T Consensus       109 ~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  183 (230)
T 3cc8_A          109 PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLA--GNWTYTEYGL---LDKTHIRFFTFNEMLRMFLKAGYSISKVD  183 (230)
T ss_dssp             HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHT--TCCCCBSSST---TBTTCCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhc--CCceeccCCC---CCcceEEEecHHHHHHHHHHcCCeEEEEE
Confidence            257999999999999999998765543333333222  1222111110   11112244667778888888898875544


Q ss_pred             E
Q psy13086        163 F  163 (169)
Q Consensus       163 ~  163 (169)
                      .
T Consensus       184 ~  184 (230)
T 3cc8_A          184 R  184 (230)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.37  E-value=6.1e-13  Score=101.38  Aligned_cols=132  Identities=12%  Similarity=0.086  Sum_probs=78.8

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c----ccceEE-----EeCCCCccccc------ch
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L----YLKKMF-----FLYPDPHFKRC------KY   77 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~----~~d~v~-----~~f~d~~f~~~------h~   77 (169)
                      .+|||||||+|     ++.. ++.+++|+|+|+.|++.|++++. .    .+..+.     +.+++..||..      |+
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~  123 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF  123 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred             CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence            48999999999     5555 77899999999999999998754 1    111111     22334444431      22


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEeCCh--HHHHHHHHHHh-cCCCceecCccccccCCCCCCCCCCCCHHHHHHHHc
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTITDVK--DLHDWIVSHFT-EHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRN  154 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~--~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~  154 (169)
                      ..  ....++++++++|||||.+++.+...  .........+. ..+.|.......        ....+..+++....+.
T Consensus       124 ~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~a  193 (219)
T 3dlc_A          124 WE--DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKN--------ISQENVERFQNVLDEI  193 (219)
T ss_dssp             CS--CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHH--------SSHHHHHHHHHHHHHH
T ss_pred             cc--CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhc--------cccCCHHHHHHHHHHc
Confidence            11  13679999999999999999986432  22222222222 122222110000        1113456778888888


Q ss_pred             CCCeEEE
Q psy13086        155 KGEKFCA  161 (169)
Q Consensus       155 g~~i~~~  161 (169)
                      |..+..+
T Consensus       194 Gf~~v~~  200 (219)
T 3dlc_A          194 GISSYEI  200 (219)
T ss_dssp             TCSSEEE
T ss_pred             CCCeEEE
Confidence            8876433

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.37  E-value=1.3e-12  Score=103.65  Aligned_cols=85  Identities=20%  Similarity=0.215  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEE-----EeCCCCccccc------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMF-----FLYPDPHFKRC------   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~-----~~f~d~~f~~~------   75 (169)
                      ++.+|||||||+|     +++.. +.+++|+|+|+.|++.|++++.     ..+..+.     +.+++..||..      
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  139 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESL  139 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechh
Confidence            4679999999999     44444 5799999999999999988754     1121111     23344445532      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ++...  ...++++++++|||||.+++.+
T Consensus       140 ~~~~~--~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          140 HHMPD--RGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             TTSSC--HHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhCCC--HHHHHHHHHHHcCCCeEEEEEE
Confidence            22111  2689999999999999999875

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.37  E-value=6.2e-13  Score=105.54  Aligned_cols=89  Identities=18%  Similarity=0.253  Sum_probs=61.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----cccceEEEeCCCCcccccchhhhcccHHHHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLS   88 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~   88 (169)
                      +.+|||||||+|     ++...|+.+++|+|+|+.|++.|+++..    ...|...+.+++..||.....   ....+++
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~---~~~~~l~  162 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRI---YAPCKAE  162 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEE---SCCCCHH
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEe---CChhhHH
Confidence            678999999999     5566677899999999999999988753    000100122333334432211   1134689


Q ss_pred             HHHHhccCCcEEEEEeCChHH
Q psy13086         89 EYAYVLSEGGIVYTITDVKDL  109 (169)
Q Consensus        89 ~~~rvLkpGG~l~i~~d~~~~  109 (169)
                      ++.++|||||.+++.++....
T Consensus       163 ~~~~~L~pgG~l~~~~~~~~~  183 (269)
T 1p91_A          163 ELARVVKPGGWVITATPGPRH  183 (269)
T ss_dssp             HHHHHEEEEEEEEEEEECTTT
T ss_pred             HHHHhcCCCcEEEEEEcCHHH
Confidence            999999999999999866544

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.37  E-value=1.5e-12  Score=101.93  Aligned_cols=84  Identities=15%  Similarity=0.207  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c---ccceE-----EEeCCCCccccc------c
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L---YLKKM-----FFLYPDPHFKRC------K   76 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~---~~d~v-----~~~f~d~~f~~~------h   76 (169)
                      ++.+|||||||+|     ++...  .+++|+|+|+.|++.|++++. .   .+..+     .+.+++..||..      |
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~   98 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH   98 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchh
Confidence            4689999999999     55554  489999999999999988753 1   11111     123444445532      2


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +..  ....++++++++|||||.+++.+
T Consensus        99 ~~~--~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           99 HFS--DVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             GCS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcc--CHHHHHHHHHHHcCCCcEEEEEE
Confidence            211  13689999999999999999974

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.36  E-value=4.3e-13  Score=107.89  Aligned_cols=85  Identities=15%  Similarity=0.112  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEE-----EeCCCCccccc------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMF-----FLYPDPHFKRC------   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~-----~~f~d~~f~~~------   75 (169)
                      ++.+|||||||+|     ++..+ +.+++|+|+|+.|++.|++++.     ..+..+.     +.+++..||..      
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  160 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  160 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchh
Confidence            4679999999999     44444 4699999999999999988753     1121111     23444455532      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ++...  ...++++++|+|||||.+++.+
T Consensus       161 ~~~~~--~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          161 LHSPD--KLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             GGCSC--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCC--HHHHHHHHHHHcCCCeEEEEEE
Confidence            22111  2689999999999999999975

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.36  E-value=1.8e-12  Score=101.42  Aligned_cols=86  Identities=12%  Similarity=-0.048  Sum_probs=57.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccc----cceEE-----EeCCCCccccc------ch
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLY----LKKMF-----FLYPDPHFKRC------KY   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~----~d~v~-----~~f~d~~f~~~------h~   77 (169)
                      ..+|||||||+|     ++... ..+++|+|+|+.|++.|++++...    ++.+.     +.+++..||..      ++
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence            679999999999     44544 469999999999999999876411    11111     11222234421      11


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ...-....+++++.++|||||.+++.+
T Consensus       159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~  185 (241)
T 2ex4_A          159 LTDQHLAEFLRRCKGSLRPNGIIVIKD  185 (241)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            111012479999999999999999975

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.36  E-value=2e-12  Score=101.56  Aligned_cols=87  Identities=14%  Similarity=0.075  Sum_probs=60.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEE--------eCC---CCcccccchhhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFF--------LYP---DPHFKRCKYKWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~--------~f~---d~~f~~~h~~~~   80 (169)
                      +.+|||||||+|     ++...|+.+|+|||+|+.|++.|++++. ..++.+.+        .++   +..||......-
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~  150 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV  150 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc
Confidence            679999999999     5555788999999999999999988764 11222221        111   234443211110


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEe
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .....+++++.++|||||.+++..
T Consensus       151 ~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          151 ARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            113689999999999999999874

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.36  E-value=1.8e-12  Score=101.89  Aligned_cols=83  Identities=14%  Similarity=0.173  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---cccceE-----EEeCCCCccccc------ch
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---LYLKKM-----FFLYPDPHFKRC------KY   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---~~~d~v-----~~~f~d~~f~~~------h~   77 (169)
                      ++.+|||||||+|     ++..  ..+++|+|+|+.|++.|++++.   ..+..+     .+.+++..||..      |+
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  116 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL  116 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence            3679999999999     4444  5799999999999999998752   111111     122333344432      22


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ..  ....++++++++|||||.+++.
T Consensus       117 ~~--~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          117 VP--DWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             CT--THHHHHHHHHHHEEEEEEEEEE
T ss_pred             cC--CHHHHHHHHHHHCCCCcEEEEE
Confidence            21  1368999999999999999987

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.36  E-value=9e-13  Score=101.14  Aligned_cols=88  Identities=9%  Similarity=0.042  Sum_probs=57.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeC----CCCcccc------cchhhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLY----PDPHFKR------CKYKWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f----~d~~f~~------~h~~~~   80 (169)
                      ..+|||||||+|     ++...  .+++|+|+|+.|++.|++++.  ..+..+...+    ++..||.      .|+...
T Consensus        52 ~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  129 (216)
T 3ofk_A           52 VSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYLED  129 (216)
T ss_dssp             EEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGGSSS
T ss_pred             CCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHhCCC
Confidence            578999999999     44443  589999999999999998764  1111111111    1222332      111111


Q ss_pred             -cccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         81 -IINQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        81 -~~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                       -....++++++++|||||.+++.+...
T Consensus       130 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          130 MTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence             001468999999999999999987544

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.36  E-value=1.9e-12  Score=100.83  Aligned_cols=85  Identities=15%  Similarity=0.149  Sum_probs=55.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc--ccceEEE---eC----CCCccccc------ch
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL--YLKKMFF---LY----PDPHFKRC------KY   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~--~~d~v~~---~f----~d~~f~~~------h~   77 (169)
                      ..+|||||||+|     ++.  +..+|+|+|+|+.|++.|++++..  ..+.+.+   .+    ++..||..      ++
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence            458999999999     333  567999999999999999987641  1111111   11    11123321      11


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ...-....++++++++|||||.+++.+
T Consensus       145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  171 (235)
T 3lcc_A          145 IEPEMRPAWAKSMYELLKPDGELITLM  171 (235)
T ss_dssp             SCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence            111113679999999999999999865

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.35  E-value=1.7e-12  Score=103.36  Aligned_cols=87  Identities=17%  Similarity=0.109  Sum_probs=61.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe------CC-----CCcccccchhhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL------YP-----DPHFKRCKYKWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~------f~-----d~~f~~~h~~~~   80 (169)
                      +.+|||||||+|     ++..+|+.+|+|||+|+.|++.|++++. ..++.+.+.      ++     +..||..-...-
T Consensus        81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~  160 (249)
T 3g89_A           81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAV  160 (249)
T ss_dssp             SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESS
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCc
Confidence            678999999999     6777899999999999999999998765 222222221      11     134543221100


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEe
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .....+++.+.++|||||++++..
T Consensus       161 ~~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          161 APLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHcCCCeEEEEEe
Confidence            012689999999999999998865

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.35  E-value=1.2e-12  Score=100.22  Aligned_cols=79  Identities=13%  Similarity=0.063  Sum_probs=56.8

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------cccceEEEeCCCCcccccchh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------LYLKKMFFLYPDPHFKRCKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------~~~d~v~~~f~d~~f~~~h~~   78 (169)
                      +.+|||||||+|     ++..  +.+++|+|+|+.|++.|++++.              +++|.|.....      .++.
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~------l~~~  115 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHAC------LLHV  115 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSC------GGGS
T ss_pred             CCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCc------hhhc
Confidence            679999999999     3333  5699999999999999998743              33444433211      1111


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..-....++++++++|||||.+++.+
T Consensus       116 ~~~~~~~~l~~~~~~LkpgG~l~~~~  141 (211)
T 3e23_A          116 PRDELADVLKLIWRALKPGGLFYASY  141 (211)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            10012579999999999999999975

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.35  E-value=7.3e-12  Score=93.34  Aligned_cols=103  Identities=14%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEe-------CCC-Ccccccchhhh-
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFL-------YPD-PHFKRCKYKWR-   80 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~-------f~d-~~f~~~h~~~~-   80 (169)
                      ++.+|||+|||+|     ++...  .+++|+|+|+.+++.|++++. ..+ +.+.+.       +++ ..||..-.... 
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~  110 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG  110 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCch
Confidence            3679999999999     44544  799999999999999988653 111 111110       111 12221100000 


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      -....+++++.++|+|||.+++.+..........+.+..++
T Consensus       111 ~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g  151 (192)
T 1l3i_A          111 GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLG  151 (192)
T ss_dssp             TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCC
Confidence            01268999999999999999998877666666666666654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.6e-12  Score=105.05  Aligned_cols=83  Identities=14%  Similarity=0.145  Sum_probs=59.4

Q ss_pred             CCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhcc------ccceEE-----EeCCC------Ccccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWSL------YLKKMF-----FLYPD------PHFKR   74 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~~------~~d~v~-----~~f~d------~~f~~   74 (169)
                      +.+|||||||+|     ++..+ +..+|+|+|+|+.|++.|++++..      .+..+.     +.+++      ..||.
T Consensus        37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  116 (299)
T 3g5t_A           37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDM  116 (299)
T ss_dssp             CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeE
Confidence            689999999999     66554 788999999999999999886431      111111     12233      23442


Q ss_pred             ------cchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         75 ------CKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        75 ------~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                            .|+.   ....++++++++|||||.|++.
T Consensus       117 V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          117 ITAVECAHWF---DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             EEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEE
Confidence                  2222   2478999999999999999883

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.34  E-value=3.2e-12  Score=97.83  Aligned_cols=79  Identities=18%  Similarity=0.121  Sum_probs=58.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCCCCccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~d~~f~   73 (169)
                      +.+|||||||+|     ++..  +.+++|+|+|+.|++.|+++..                   .++|.|.+...-..  
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~~--  128 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLH--  128 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCCS--
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhhh--
Confidence            578999999999     4444  5699999999999999987621                   23555544322110  


Q ss_pred             ccchhhhcccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         74 RCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        74 ~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                             -....++++++++|||||.+++.+..+
T Consensus       129 -------~~~~~~l~~~~~~L~pgG~l~~~~~~~  155 (227)
T 3e8s_A          129 -------QDIIELLSAMRTLLVPGGALVIQTLHP  155 (227)
T ss_dssp             -------SCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             -------hhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence                   013689999999999999999987544

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.34  E-value=3.1e-12  Score=99.12  Aligned_cols=104  Identities=15%  Similarity=0.062  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCc-cc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCC
Q psy13086         17 KKVEFVDVGCG-KL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG-~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d   69 (169)
                      ++.+||||||| +|     ++... ..+|+|+|+|+.|++.|++++.                     +++|.|....|-
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~  133 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY  133 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence            46899999999 99     44443 6799999999999999998753                     233444322110


Q ss_pred             Ccccc--cc-hhhh--------cccHHHHHHHHHhccCCcEEEEEeCC-hHHHHHHHHHHhcCC
Q psy13086         70 PHFKR--CK-YKWR--------IINQNLLSEYAYVLSEGGIVYTITDV-KDLHDWIVSHFTEHP  121 (169)
Q Consensus        70 ~~f~~--~h-~~~~--------~~~~~~l~~~~rvLkpGG~l~i~~d~-~~~~~~~~~~~~~~~  121 (169)
                      -+...  .. ....        -....+++++.++|||||.+++.+.. ......+.+.+..++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g  197 (230)
T 3evz_A          134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLG  197 (230)
T ss_dssp             C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcC
Confidence            00000  00 0000        00267999999999999999997643 344455566666554

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.34  E-value=2e-12  Score=100.97  Aligned_cols=86  Identities=8%  Similarity=0.091  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEE---eCCC--------Cccccc-chhh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFF---LYPD--------PHFKRC-KYKW   79 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~---~f~d--------~~f~~~-h~~~   79 (169)
                      ++.+|||||||+|     ++...+..+|+|+|+|+.|++.|++++... +.+..   ...+        ..||.. |...
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~  152 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIVEKVDVIYEDVA  152 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTSCCEEEEEECCC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccccCccEEEEEEecC
Confidence            3678999999999     666767779999999999999998876411 11111   1111        123321 1110


Q ss_pred             hc-ccHHHHHHHHHhccCCcEEEEE
Q psy13086         80 RI-INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        80 ~~-~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .. ....+++++.++|||||.+++.
T Consensus       153 ~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          153 QPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            00 0156799999999999999995

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.34  E-value=2.5e-12  Score=108.23  Aligned_cols=98  Identities=15%  Similarity=0.204  Sum_probs=66.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPD   69 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d   69 (169)
                      +.+|||+|||+|     ++..+|..+|+|+|+|+.|++.|++++.                       +++|.|.+   +
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~---n  299 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLC---N  299 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEE---C
T ss_pred             CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEE---C
Confidence            478999999999     7778899999999999999999988654                       12333322   1


Q ss_pred             CcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC-ChHHHHHHHHHHh
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD-VKDLHDWIVSHFT  118 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d-~~~~~~~~~~~~~  118 (169)
                      |-|........-....+++++.++|||||.++++.. ...|..++.+.+.
T Consensus       300 ppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg  349 (375)
T 4dcm_A          300 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG  349 (375)
T ss_dssp             CCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred             CCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence            111100011111124689999999999999999764 3446666666554

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.34  E-value=3.2e-12  Score=102.42  Aligned_cols=94  Identities=18%  Similarity=0.235  Sum_probs=69.2

Q ss_pred             CCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~   70 (169)
                      +.+|||+|||+|     ++.. .|..+++|+|+|+.+++.|++++.                     .++|.|.+..+++
T Consensus       113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~~~~~  192 (277)
T 1o54_A          113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDP  192 (277)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCSCG
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEECCcCH
Confidence            579999999999     5555 577899999999999999988753                     1233333322222


Q ss_pred             cccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                                   ..+++++.++|+|||.+++.+........+.+.+.+. +|..
T Consensus       193 -------------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~-gf~~  233 (277)
T 1o54_A          193 -------------WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQEL-PFIR  233 (277)
T ss_dssp             -------------GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHS-SEEE
T ss_pred             -------------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHC-CCce
Confidence                         3689999999999999999987765555566666653 4543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.34  E-value=6.1e-13  Score=106.08  Aligned_cols=39  Identities=15%  Similarity=0.107  Sum_probs=30.6

Q ss_pred             CCeEEEEcCccc-ccC--cCCC-CcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL-YLP--MFPS-TLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~--~~p~-~~v~GiDis~~~l~~a~~~~   56 (169)
                      +.+|||||||+| ++.  ..+. .+|+|+|+|+.|++.|++++
T Consensus        56 g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~   98 (263)
T 2a14_A           56 GDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWL   98 (263)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHH
T ss_pred             CceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHH
Confidence            578999999999 221  2233 37999999999999998764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.34  E-value=2e-12  Score=100.26  Aligned_cols=108  Identities=14%  Similarity=0.102  Sum_probs=63.5

Q ss_pred             CCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEe----------CCC----Cccccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFL----------YPD----PHFKRC   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~----------f~d----~~f~~~   75 (169)
                      ..+|||||||+|     ++... ++.+|+|||+|+.|++.|++++. ..+ +.+.+.          +++    ..||..
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V  138 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  138 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence            578999999999     66655 47899999999999999998754 111 111111          010    123321


Q ss_pred             c---hhhhc-ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086         76 K---YKWRI-INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        76 h---~~~~~-~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      .   ..... ....+++.+ ++|||||.+++.+-...-.....+.+..++.|...
T Consensus       139 ~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~  192 (221)
T 3u81_A          139 FLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECT  192 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEE
T ss_pred             EEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEE
Confidence            0   00000 012467777 99999999987532211112234455667776654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.34  E-value=1.7e-11  Score=90.85  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=69.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEE-------eCCCCcccccchhhhccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFF-------LYPDPHFKRCKYKWRIIN   83 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~-------~f~d~~f~~~h~~~~~~~   83 (169)
                      ++.+|||||||+|     ++.  +..+++|+|+|+.|++.|++++. ..++.+.+       .+++..||.......-..
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~~~~  112 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGTKNI  112 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSCSCH
T ss_pred             CCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCcccH
Confidence            3679999999999     444  77899999999999999998753 11111111       111112221110000113


Q ss_pred             HHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         84 QNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                      ..+++++.++  |||.+++.+..........+.+.+++ |..
T Consensus       113 ~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g-~~~  151 (183)
T 2yxd_A          113 EKIIEILDKK--KINHIVANTIVLENAAKIINEFESRG-YNV  151 (183)
T ss_dssp             HHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTT-CEE
T ss_pred             HHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcC-CeE
Confidence            6799999998  99999999877777777778888776 443

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.34  E-value=4.1e-12  Score=96.00  Aligned_cols=81  Identities=10%  Similarity=0.032  Sum_probs=56.3

Q ss_pred             CCeEEEEcCccc---c-cCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCCC
Q psy13086         18 KVEFVDVGCGKL---Y-LPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        18 ~~~iLDiGCG~G---l-a~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d~   70 (169)
                      +.+|||+|||+|   + +...+..+|+|+|+|+.|++.|++++.                       .++|.|.+..|  
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p--  122 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP--  122 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC--
T ss_pred             CCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC--
Confidence            678999999999   2 223355689999999999999998754                       22333332211  


Q ss_pred             cccccchhhhcccHHHHHHHHH--hccCCcEEEEEeC
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAY--VLSEGGIVYTITD  105 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~r--vLkpGG~l~i~~d  105 (169)
                       +   ++.. -....+++++.+  +|||||.+++.+.
T Consensus       123 -~---~~~~-~~~~~~l~~~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          123 -Y---NVDS-ADVDAILAALGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             -T---TSCH-HHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred             -C---Ccch-hhHHHHHHHHHhcCccCCCeEEEEEec
Confidence             1   1100 013578999999  9999999999763

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.33  E-value=5.3e-12  Score=94.26  Aligned_cols=100  Identities=11%  Similarity=0.173  Sum_probs=65.0

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc-----cceEEEeC----CCCccccc------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY-----LKKMFFLY----PDPHFKRC------   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~-----~d~v~~~f----~d~~f~~~------   75 (169)
                      ++.+|||||||+|     ++..  ..+++|+|+|+.|++.|++++. ..     +..+....    ++..||..      
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  129 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPI  129 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEEECCCc
Confidence            3679999999999     4444  6799999999999999988754 11     22211111    11122211      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE  119 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~  119 (169)
                      |+.. -....+++++.++|||||.+++.+........+.+.+.+
T Consensus       130 ~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  172 (194)
T 1dus_A          130 RAGK-EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKD  172 (194)
T ss_dssp             TTCH-HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHH
T ss_pred             ccch-hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHH
Confidence            1100 012579999999999999999998766554444444444

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.33  E-value=1.6e-12  Score=105.88  Aligned_cols=87  Identities=21%  Similarity=0.250  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c----ccceEE-----EeCCCCcccccchh---
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L----YLKKMF-----FLYPDPHFKRCKYK---   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~----~~d~v~-----~~f~d~~f~~~h~~---   78 (169)
                      ++.+|||||||+|     +++.+ +.+|+|+|+|+.|++.|++++. .    .++.+.     +.+++..||.....   
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  195 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNEST  195 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCG
T ss_pred             CCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCch
Confidence            3689999999999     55543 5799999999999999998754 1    122211     22344455532110   


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..+....+++++.++|||||.+++.+
T Consensus       196 ~~~~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          196 MYVDLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             GGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            01114789999999999999999986

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.33  E-value=3.5e-12  Score=101.74  Aligned_cols=107  Identities=15%  Similarity=0.190  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhccc----cceEEE--------eCCCCcccccchh
Q psy13086         17 KKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWSLY----LKKMFF--------LYPDPHFKRCKYK   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~~~----~d~v~~--------~f~d~~f~~~h~~   78 (169)
                      ++.+|||+|||+|     ++.. .|..+++|+|+|+.+++.|++++...    .+.+.+        .+++..||..-..
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~  178 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLD  178 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEE
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEEC
Confidence            3679999999999     5553 46789999999999999998765311    122221        1122223321100


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCce
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFV  124 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~  124 (169)
                      - .....+++++.++|||||.+++.+...+....+...+..+..|.
T Consensus       179 ~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~  223 (280)
T 1i9g_A          179 M-LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  223 (280)
T ss_dssp             S-SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             C-cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence            0 00136899999999999999999887766665666666534443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.33  E-value=3.8e-12  Score=96.64  Aligned_cols=87  Identities=8%  Similarity=-0.048  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c--ccceE-----EEeCCCCcccccch----hh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L--YLKKM-----FFLYPDPHFKRCKY----KW   79 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~--~~d~v-----~~~f~d~~f~~~h~----~~   79 (169)
                      ++ +|||||||+|     ++..  +.+++|+|+|+.|++.|++++. .  .+..+     .+.+++..||....    ..
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~  106 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLP  106 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCC
T ss_pred             CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCC
Confidence            35 9999999999     4443  5699999999999999988753 0  01100     01122223332110    00


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      .-....+++++.++|||||.+++.+..
T Consensus       107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A          107 SSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            001367999999999999999998643

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.33  E-value=2.3e-12  Score=101.96  Aligned_cols=79  Identities=14%  Similarity=0.133  Sum_probs=55.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------cccceEEEeCCCCcccccch
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------LYLKKMFFLYPDPHFKRCKY   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------~~~d~v~~~f~d~~f~~~h~   77 (169)
                      +.+|||||||+|     ++..  ..+++|+|+|+.|++.|+++.+               +++|.|.+.+.     ..++
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~-----~l~~  123 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFS-----SIGH  123 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTT-----GGGG
T ss_pred             CCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCc-----hhhh
Confidence            579999999999     4444  3589999999999999998753               23444433220     1111


Q ss_pred             hhh-cccHHHHHHHHHhccCCcEEEEE
Q psy13086         78 KWR-IINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        78 ~~~-~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ... -....++++++++|||||.|++.
T Consensus       124 ~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          124 LAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             SCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            100 01257899999999999999985

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.33  E-value=2.7e-12  Score=98.90  Aligned_cols=142  Identities=15%  Similarity=0.115  Sum_probs=80.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc--------cceEE-----EeCCCCccccc--
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY--------LKKMF-----FLYPDPHFKRC--   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~--------~d~v~-----~~f~d~~f~~~--   75 (169)
                      ++.+|||||||+|     ++..  +.+++|+|+|+.|++.|++++. ..        ++.+.     +.+++..||..  
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            4689999999999     4444  5799999999999999998764 11        11111     12233344421  


Q ss_pred             ----chhhhc-ccHHHHHHHHHhccCCcEEEEEeCC-----hHHHHHHHHHHhc---CCCceecCccccccCCCCCCCCC
Q psy13086         76 ----KYKWRI-INQNLLSEYAYVLSEGGIVYTITDV-----KDLHDWIVSHFTE---HPLFVECDLEELKRTDPVVDKLY  142 (169)
Q Consensus        76 ----h~~~~~-~~~~~l~~~~rvLkpGG~l~i~~d~-----~~~~~~~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~  142 (169)
                          ++.... ....++++++++|||||.+++.+..     ..+.......+..   ...|........  ..+.....+
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  185 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETG--ETEFIAHHF  185 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTC--CEEEEEECB
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccC--CcceeeEeC
Confidence                111000 0127999999999999999998532     1222222222111   111111100000  001111345


Q ss_pred             CCCHHHHHHHHcCCCeEEEE
Q psy13086        143 QSTEEGQKVTRNKGEKFCAV  162 (169)
Q Consensus       143 ~~T~ye~~~~~~g~~i~~~~  162 (169)
                      ...+++....+.|..+-.+.
T Consensus       186 ~~~~l~~ll~~aGf~~~~~~  205 (235)
T 3sm3_A          186 TEKELVFLLTDCRFEIDYFR  205 (235)
T ss_dssp             CHHHHHHHHHTTTEEEEEEE
T ss_pred             CHHHHHHHHHHcCCEEEEEE
Confidence            67788888888998886554

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.33  E-value=2.7e-12  Score=94.97  Aligned_cols=78  Identities=26%  Similarity=0.289  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------cccceEEEeCCCCcccccchh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------LYLKKMFFLYPDPHFKRCKYK   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------~~~d~v~~~f~d~~f~~~h~~   78 (169)
                      ++.+|||||||+|     ++...  .+++|+|+|+.|++.|+++.+             +++|.|.+...-.      +.
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~v~~~~~d~~~~~~~~D~v~~~~~l~------~~   88 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKFDSVITLSDPKEIPDNSVDFILFANSFH------DM   88 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHHCTTSEEESSGGGSCTTCEEEEEEESCST------TC
T ss_pred             CCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHhCCCcEEEeCCCCCCCCceEEEEEccchh------cc
Confidence            3578999999999     44444  399999999999999988632             2344443322211      11


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .  ....+++++.++|||||.+++.+
T Consensus        89 ~--~~~~~l~~~~~~L~pgG~l~~~~  112 (170)
T 3i9f_A           89 D--DKQHVISEVKRILKDDGRVIIID  112 (170)
T ss_dssp             S--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c--CHHHHHHHHHHhcCCCCEEEEEE
Confidence            1  12579999999999999999975

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.33  E-value=3.6e-12  Score=101.97  Aligned_cols=87  Identities=15%  Similarity=0.169  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--c---ccceEEE---eCCCCccccc------ch
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--L---YLKKMFF---LYPDPHFKRC------KY   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~---~~d~v~~---~f~d~~f~~~------h~   77 (169)
                      ++.+|||||||+|     +++.+ +.+++|+|+|+.|++.|++++.  +   .++.+..   .++ ..||..      ++
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~fD~v~~~~~l~~  141 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-EPVDRIVSIGAFEH  141 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-CCCSEEEEESCGGG
T ss_pred             CcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CCeeEEEEeCchhh
Confidence            4679999999999     45444 3599999999999999998754  0   1111111   111 233321      12


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      ...-....++++++++|||||.+++.+.
T Consensus       142 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          142 FGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             TCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             cChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            1101136899999999999999999753

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.33  E-value=5.6e-12  Score=99.03  Aligned_cols=107  Identities=11%  Similarity=0.028  Sum_probs=70.9

Q ss_pred             CCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhcc--ccceEEE--------eCCCCcccccchhhh
Q psy13086         17 KKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWSL--YLKKMFF--------LYPDPHFKRCKYKWR   80 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~~--~~d~v~~--------~f~d~~f~~~h~~~~   80 (169)
                      ++.+|||+|||+|     ++.. .|..+++|+|+|+.+++.|++++..  ..+.+.+        .+++..||..-....
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~~~  175 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDLM  175 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEESS
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEECCc
Confidence            3679999999999     5555 5678999999999999999887531  1122211        122222332110000


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                       ....+++++.++|||||.+++.+........+.+.+.++ +|..
T Consensus       176 -~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-gf~~  218 (258)
T 2pwy_A          176 -EPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAH-PFRL  218 (258)
T ss_dssp             -CGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTT-TEEE
T ss_pred             -CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC-CCce
Confidence             013689999999999999999988776555566666654 4543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.32  E-value=3.4e-12  Score=96.15  Aligned_cols=84  Identities=13%  Similarity=0.108  Sum_probs=55.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c---ccceEE-----EeCCCCcccc------cch
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L---YLKKMF-----FLYPDPHFKR------CKY   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~---~~d~v~-----~~f~d~~f~~------~h~   77 (169)
                      +.+|||||||+|     ++..  +.+++|+|+|+.|++.|++++. .   .+..+.     +.+ +..||.      .|+
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~  109 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMF  109 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGG
T ss_pred             CCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhh
Confidence            579999999999     4443  5699999999999999987653 1   111111     111 223332      122


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ...-....+++++.++|||||.+++.+
T Consensus       110 ~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          110 LEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            111123679999999999999988764

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.32  E-value=3.9e-12  Score=99.63  Aligned_cols=85  Identities=11%  Similarity=0.191  Sum_probs=57.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeC-------C---CCcccccchhh-
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLY-------P---DPHFKRCKYKW-   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f-------~---d~~f~~~h~~~-   79 (169)
                      ..+|||||||+|     ++...|..+|+|+|+|+.|++.|++++. ..+ +.+.+..       +   +..||...... 
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~  151 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA  151 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence            678999999999     7777788999999999999999998764 111 1121110       1   12233211000 


Q ss_pred             hcccHHHHHHHHHhccCCcEEEE
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                      .-....+++++.++|||||.|++
T Consensus       152 ~~~~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          152 KAQSKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             SSSHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEE
Confidence            00126799999999999999987

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.32  E-value=2.7e-12  Score=99.65  Aligned_cols=88  Identities=20%  Similarity=0.191  Sum_probs=59.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc-ccceEE-----EeCCCCccccc------chhhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL-YLKKMF-----FLYPDPHFKRC------KYKWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~-~~d~v~-----~~f~d~~f~~~------h~~~~   80 (169)
                      +.+|||||||+|     ++.. ...+++|+|+|+.|++.|+++... .++.+.     +.+++..||..      |+.. 
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-  121 (243)
T 3bkw_A           44 GLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVE-  121 (243)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCS-
T ss_pred             CCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccc-
Confidence            679999999999     3333 223999999999999999987541 111111     12233334421      2211 


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTITDVKD  108 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~d~~~  108 (169)
                       ....++++++++|||||.+++.+..+.
T Consensus       122 -~~~~~l~~~~~~L~pgG~l~~~~~~~~  148 (243)
T 3bkw_A          122 -DVARLFRTVHQALSPGGHFVFSTEHPI  148 (243)
T ss_dssp             -CHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             -hHHHHHHHHHHhcCcCcEEEEEeCCcc
Confidence             136899999999999999999876553

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.32  E-value=1.1e-12  Score=99.90  Aligned_cols=87  Identities=16%  Similarity=0.071  Sum_probs=57.9

Q ss_pred             CCeEEEEcCccc-c-cC--cCCCCcEEEEeCCHHHHHHHHHHhc---cccceEE-----EeCCCCcccc------cchhh
Q psy13086         18 KVEFVDVGCGKL-Y-LP--MFPSTLILGLEIRVKVSDYVIDEWS---LYLKKMF-----FLYPDPHFKR------CKYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-l-a~--~~p~~~v~GiDis~~~l~~a~~~~~---~~~d~v~-----~~f~d~~f~~------~h~~~   79 (169)
                      +.+|||||||+| + ..  ..++.+++|+|+|+.|++.|++++.   ..+..+.     +.+++..||.      .++..
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  103 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMR  103 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhCC
Confidence            679999999999 2 11  2356799999999999999987653   1111111     1233333442      12211


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .-....++++++++|||||.+++.+
T Consensus       104 ~~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A          104 KNDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            0113679999999999999999976

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.32  E-value=8.9e-13  Score=105.71  Aligned_cols=91  Identities=14%  Similarity=0.062  Sum_probs=60.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------cccceEE-----Ee---CCCCcccccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------LYLKKMF-----FL---YPDPHFKRCK   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------~~~d~v~-----~~---f~d~~f~~~h   76 (169)
                      ..+|||||||+|     ++..  +.+|+|+|+|+.|++.|++++.        ..++.+.     +.   +++..||...
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~  135 (293)
T 3thr_A           58 CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  135 (293)
T ss_dssp             CCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEE
Confidence            578999999999     4444  4599999999999999987641        0111110     11   3334444321


Q ss_pred             h-------hhh-----cccHHHHHHHHHhccCCcEEEEEeCChHHH
Q psy13086         77 Y-------KWR-----IINQNLLSEYAYVLSEGGIVYTITDVKDLH  110 (169)
Q Consensus        77 ~-------~~~-----~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~  110 (169)
                      .       ...     -....++++++++|||||.+++.+...+..
T Consensus       136 ~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  181 (293)
T 3thr_A          136 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYI  181 (293)
T ss_dssp             ECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred             EcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHH
Confidence            1       111     013679999999999999999987665543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.32  E-value=2e-12  Score=98.53  Aligned_cols=88  Identities=18%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEE---eC----CCCcccccchhhhcccH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFF---LY----PDPHFKRCKYKWRIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~---~f----~d~~f~~~h~~~~~~~~   84 (169)
                      +.+|||||||+|     ++..+|+.+++|+|+|+.|++.|++++. ..++.+.+   .+    ++..||......--...
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~~~~~  145 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLN  145 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSSSHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEeccCCHH
Confidence            578999999999     6666788999999999999999998765 12221221   11    11233322111000126


Q ss_pred             HHHHHHHHhccCCcEEEEEeC
Q psy13086         85 NLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      .+++++.++|+|||.+++...
T Consensus       146 ~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          146 DMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             HHHHHHTTSEEEEEEEEEEES
T ss_pred             HHHHHHHHhcCCCcEEEEEeC
Confidence            799999999999999999753

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.32  E-value=1.7e-12  Score=98.76  Aligned_cols=91  Identities=16%  Similarity=0.149  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc--ccceEE-----EeCCCCcccccch------h
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL--YLKKMF-----FLYPDPHFKRCKY------K   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~--~~d~v~-----~~f~d~~f~~~h~------~   78 (169)
                      ++.+|||||||+|     ++...+. +++|+|+|+.|++.|++++..  .+..+.     +.+++..||....      .
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~  120 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDAL  120 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHH
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhh
Confidence            3678999999999     4444333 899999999999999987531  111111     1222233332110      0


Q ss_pred             -------------hhcccHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086         79 -------------WRIINQNLLSEYAYVLSEGGIVYTITDVKD  108 (169)
Q Consensus        79 -------------~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~  108 (169)
                                   ..-....+++++.++|||||.+++.+....
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  163 (215)
T 2pxx_A          121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP  163 (215)
T ss_dssp             TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred             ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence                         000126799999999999999999886653

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.32  E-value=4.6e-12  Score=103.03  Aligned_cols=86  Identities=10%  Similarity=0.173  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c----ccceEEEe---CCCCccccc------ch
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L----YLKKMFFL---YPDPHFKRC------KY   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~----~~d~v~~~---f~d~~f~~~------h~   77 (169)
                      ++.+|||||||+|     ++..+ +.+|+|+|+|+.|++.|++++. .    .++.+...   ++ ..||..      ++
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~fD~v~~~~~l~~  167 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-EPVDRIVSIEAFEH  167 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-CCCSEEEEESCGGG
T ss_pred             CcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-CCcCEEEEeChHHh
Confidence            4679999999999     45444 5699999999999999998754 0    11111100   11 223321      11


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ...-....+++++.++|||||.+++.+
T Consensus       168 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          168 FGHENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             TCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            110113689999999999999999975

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.32  E-value=4.9e-12  Score=98.21  Aligned_cols=83  Identities=13%  Similarity=0.177  Sum_probs=57.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCCCCccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~d~~f~   73 (169)
                      +.+|||||||+|     ++..   .+++|+|+|+.|++.|++++.                   .++|.|.+.+     +
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~-----~  105 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILC-----D  105 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECT-----T
T ss_pred             CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeC-----C
Confidence            578999999999     4443   799999999999999988653                   1233332211     0


Q ss_pred             ccchh-hhcccHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086         74 RCKYK-WRIINQNLLSEYAYVLSEGGIVYTITDVKD  108 (169)
Q Consensus        74 ~~h~~-~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~  108 (169)
                      ..++. ..-....++++++++|||||.+++.+..+.
T Consensus       106 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  141 (243)
T 3d2l_A          106 SLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPY  141 (243)
T ss_dssp             GGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             chhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHH
Confidence            11111 000125789999999999999999776554

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.32  E-value=3.4e-12  Score=98.15  Aligned_cols=87  Identities=13%  Similarity=0.092  Sum_probs=57.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---cccceEE-----EeCCCCcccccc------hh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---LYLKKMF-----FLYPDPHFKRCK------YK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---~~~d~v~-----~~f~d~~f~~~h------~~   78 (169)
                      ..+|||||||+|     ++...+  +++|+|+|+.|++.|+++..   ..+..+.     +.+++..||...      ..
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~  116 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF  116 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhC
Confidence            578999999999     455544  99999999999999988753   1111111     112222333211      00


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ..-....++++++++|||||.+++.+..
T Consensus       117 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          117 EPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            0001257999999999999999998644

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.31  E-value=6.3e-12  Score=99.85  Aligned_cols=100  Identities=17%  Similarity=0.180  Sum_probs=64.9

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEEeC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFFLY   67 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~~f   67 (169)
                      ++.+|||||||+|     ++.+.+. +|+|+|+++.|++.|++++.                        +++|.|..+-
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np  127 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP  127 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence            3689999999999     5666554 99999999999999987643                        2344444321


Q ss_pred             CCCcccc-c-------------chhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcC
Q psy13086         68 PDPHFKR-C-------------KYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEH  120 (169)
Q Consensus        68 ~d~~f~~-~-------------h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~  120 (169)
                        |++.. .             ++........+++.+.++|||||.+++........+ +...+..+
T Consensus       128 --Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~l~~~  191 (259)
T 3lpm_A          128 --PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLD-IIDIMRKY  191 (259)
T ss_dssp             --CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHH-HHHHHHHT
T ss_pred             --CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHH-HHHHHHHC
Confidence              11111 0             000001125799999999999999999876555444 34444444

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.31  E-value=5.9e-12  Score=100.88  Aligned_cols=106  Identities=9%  Similarity=0.063  Sum_probs=68.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~f   72 (169)
                      +.+|||||||+|     ++..+|..+++|+|+|+.|++.|++++.                    +++|.|....|-...
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~~~  189 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYIDE  189 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBCT
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCCCc
Confidence            578999999999     6667788999999999999999988753                    234555443221111


Q ss_pred             cccc-------hhh--h--------cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         73 KRCK-------YKW--R--------IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        73 ~~~h-------~~~--~--------~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                      ...|       +..  .        -....+++++.++|||||.+++....... ..+.+.+..++ |..
T Consensus       190 ~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~l~~~G-f~~  257 (276)
T 2b3t_A          190 QDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQG-EAVRQAFILAG-YHD  257 (276)
T ss_dssp             TCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCH-HHHHHHHHHTT-CTT
T ss_pred             cccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHH-HHHHHHHHHCC-CcE
Confidence            0000       000  0        01257899999999999999997643322 22344444443 543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.31  E-value=3.7e-12  Score=99.87  Aligned_cols=81  Identities=16%  Similarity=0.176  Sum_probs=55.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCCCCccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~d~~f~   73 (169)
                      +.+|||||||+|     ++..  +.+++|+|+|+.|++.|++++.                   .++|.|.+.+...   
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~---  116 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI---  116 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG---
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCch---
Confidence            579999999999     4433  5699999999999999987653                   2233333222111   


Q ss_pred             ccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         74 RCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        74 ~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                        ++...-....++++++++|||||.+++...
T Consensus       117 --~~~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          117 --MYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             --GGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --hcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence              110000125799999999999999988654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.31  E-value=9.9e-12  Score=97.05  Aligned_cols=104  Identities=15%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEe---C-----CCCcccccchhhhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFL---Y-----PDPHFKRCKYKWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~---f-----~d~~f~~~h~~~~~   81 (169)
                      ++.+|||+|||+|     ++..  ..+++|+|+|+.+++.|++++. ..+ +.+.+.   +     ++..||..-.... 
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-  167 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR-  167 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSS-
T ss_pred             CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCc-
Confidence            3679999999999     4444  6799999999999999998753 111 111111   1     1112222110000 


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                      ....+++++.++|||||.+++.++...........+..+  |..
T Consensus       168 ~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~--f~~  209 (248)
T 2yvl_A          168 EPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY--FGN  209 (248)
T ss_dssp             CGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT--EEE
T ss_pred             CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh--CCc
Confidence            013689999999999999999998776666666666655  654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.31  E-value=4.7e-12  Score=101.99  Aligned_cols=87  Identities=8%  Similarity=-0.001  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEE---eC-----CCCccccc------ch
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFF---LY-----PDPHFKRC------KY   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~---~f-----~d~~f~~~------h~   77 (169)
                      ++.+|||||||+|     ++++  ..+|+|||+|+.|++.|++++...+-...+   ..     .+..||..      |+
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~  122 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINR  122 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGG
T ss_pred             CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHh
Confidence            3679999999999     4443  579999999999999999987521111111   11     01234321      11


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ...-....+++++.++| |||+++++...
T Consensus       123 ~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          123 FTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             SCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             CCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            10001256899999999 99999998644

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.30  E-value=5.4e-12  Score=96.83  Aligned_cols=85  Identities=8%  Similarity=-0.008  Sum_probs=57.0

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEE---------eCCCCcccccchh-h
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYL-KKMFF---------LYPDPHFKRCKYK-W   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~---------~f~d~~f~~~h~~-~   79 (169)
                      ..+|||||||+|     ++...| +.+++|+|+|+.|++.|++++. ..+ +.+.+         ...+. ||..... .
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~  135 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD  135 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence            578999999999     667766 7899999999999999987654 111 11111         01111 3321100 0


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEE
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ......+++++.++|||||.+++.
T Consensus       136 ~~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          136 VFNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             TSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhhhHHHHHHHHHhcCCCeEEEEE
Confidence            011367999999999999999874

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.30  E-value=3.2e-12  Score=100.07  Aligned_cols=87  Identities=14%  Similarity=0.067  Sum_probs=58.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc--ccceEE-----EeCCCCccccc------chhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL--YLKKMF-----FLYPDPHFKRC------KYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~--~~d~v~-----~~f~d~~f~~~------h~~~   79 (169)
                      ..+|||||||+|     ++... ..+++|+|+|+.|++.|++++..  .+..+.     +.+++..||..      |+..
T Consensus        94 ~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  172 (254)
T 1xtp_A           94 TSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLT  172 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSC
T ss_pred             CCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCC
Confidence            689999999999     44443 45799999999999999987641  111111     12333344431      2211


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      .-....++++++++|||||.+++.+.
T Consensus       173 ~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          173 DADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            00135799999999999999999863

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.30  E-value=3.6e-12  Score=102.89  Aligned_cols=90  Identities=12%  Similarity=0.052  Sum_probs=59.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc-------ccceEEEeC---C-CCccccc------
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL-------YLKKMFFLY---P-DPHFKRC------   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~-------~~d~v~~~f---~-d~~f~~~------   75 (169)
                      ..+|||||||+|     ++..  +.+|+|+|+|+.|++.|++++..       .+..+...+   + +..||..      
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  160 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGS  160 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHH
T ss_pred             CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCcc
Confidence            458999999999     4444  57999999999999999987541       122211111   1 2234421      


Q ss_pred             -chhhhcccHHHHHHHHHhccCCcEEEEEeCChHH
Q psy13086         76 -KYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDL  109 (169)
Q Consensus        76 -h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~  109 (169)
                       |+...-....++++++++|||||.|++.+.....
T Consensus       161 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  195 (299)
T 3g2m_A          161 INELDEADRRGLYASVREHLEPGGKFLLSLAMSEA  195 (299)
T ss_dssp             HTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence             1111001267999999999999999998766544

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.30  E-value=2.2e-12  Score=99.74  Aligned_cols=101  Identities=11%  Similarity=0.102  Sum_probs=66.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc-eEEE-e----CCCCccc------ccchhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK-KMFF-L----YPDPHFK------RCKYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~-~----f~d~~f~------~~h~~~   79 (169)
                      ..+|||||||+|     ++...|+++|+|+|+|+.|++.|++++. ..+. .+.. .    .+...||      ..|+.+
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHlL~  129 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPVLK  129 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHHHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHhhh
Confidence            679999999999     5567789999999999999999998875 1111 1211 1    1112233      344442


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEe----------CChHHHHHHHHHHhcC
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTIT----------DVKDLHDWIVSHFTEH  120 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~----------d~~~~~~~~~~~~~~~  120 (169)
                      .  .+..+..+++.|||||.|+-..          ..+.|..++.+.+.+.
T Consensus       130 ~--~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~  178 (200)
T 3fzg_A          130 Q--QDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGW  178 (200)
T ss_dssp             H--TTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTT
T ss_pred             h--hHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCc
Confidence            1  2345668999999999986532          1234666666665433

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.30  E-value=1.5e-11  Score=100.47  Aligned_cols=85  Identities=12%  Similarity=0.079  Sum_probs=60.8

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~   65 (169)
                      ..+|||||||+|     +++..+..+++|||+|+.|++.|+++++                           +++|.|.+
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~  175 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVII  175 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEE
Confidence            578999999999     5555567899999999999999987651                           23555555


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ..+++...    ...+...+++++++++|||||.+++.+..
T Consensus       176 d~~~~~~~----~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          176 DTTDPAGP----ASKLFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             ECC-------------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCCCcccc----chhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            44443211    11223468999999999999999998654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.29  E-value=3e-12  Score=107.47  Aligned_cols=86  Identities=16%  Similarity=0.245  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc------------cccceEE-----E------eC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS------------LYLKKMF-----F------LY   67 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~------------~~~d~v~-----~------~f   67 (169)
                      ++.+|||||||+|     ++..+ |+.+|+|+|+|+.|++.|++++.            ..+..+.     +      .+
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            4689999999999     55554 77899999999999999998643            0111111     1      33


Q ss_pred             CCCccccc------chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         68 PDPHFKRC------KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        68 ~d~~f~~~------h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ++..||..      ++...  ...++++++|+|||||.|++.+
T Consensus       163 ~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEE
Confidence            44455532      22111  3689999999999999999974

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.29  E-value=2.4e-12  Score=102.05  Aligned_cols=87  Identities=15%  Similarity=0.143  Sum_probs=59.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccc---cceEEEeCCCCccccc-------chhhhcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLY---LKKMFFLYPDPHFKRC-------KYKWRII   82 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~---~d~v~~~f~d~~f~~~-------h~~~~~~   82 (169)
                      +.+|||||||+|     ++..  ..+++|+|+|+.|++.|+++....   .|...+.+++..||..       |....  
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~--  130 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN--  130 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC--
T ss_pred             CCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc--
Confidence            679999999999     4443  569999999999999999875410   0000122333344421       11111  


Q ss_pred             cHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTITDVKD  108 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~d~~~  108 (169)
                      ...++++++++|||||.+++.+....
T Consensus       131 ~~~~l~~~~~~LkpgG~l~~~~~~~~  156 (260)
T 2avn_A          131 KDKAFSEIRRVLVPDGLLIATVDNFY  156 (260)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred             HHHHHHHHHHHcCCCeEEEEEeCChH
Confidence            36899999999999999999876543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.29  E-value=5.8e-12  Score=97.28  Aligned_cols=87  Identities=14%  Similarity=0.148  Sum_probs=57.2

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-cccc-eEEEeCCC--------------Cccccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYLK-KMFFLYPD--------------PHFKRC   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~~f~d--------------~~f~~~   75 (169)
                      ..+|||||||+|     ++..+| +.+|+|+|+|+.|++.|++++. ..++ .+.+...|              ..||..
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            578999999999     777776 7899999999999999988754 1111 01110000              112211


Q ss_pred             chh-hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 KYK-WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h~~-~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ... ..-....+++++.++|||||.+++..
T Consensus       145 ~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          145 YIDADKANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             EECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            000 00013579999999999999998853

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.29  E-value=1.5e-11  Score=101.39  Aligned_cols=99  Identities=14%  Similarity=-0.001  Sum_probs=69.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..+|||||||+|     +++..|..+++|+|+|+.|++.|+++++                          +++|.|.+.
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d  196 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD  196 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence            578999999999     5555577899999999999999987642                          235666555


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCCh----HHHHHHHHHHhcC
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVK----DLHDWIVSHFTEH  120 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~----~~~~~~~~~~~~~  120 (169)
                      .++|+-    ....+...++++++.++|||||.+++.+..+    .....+.+.+.+.
T Consensus       197 ~~~p~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~  250 (321)
T 2pt6_A          197 SSDPIG----PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL  250 (321)
T ss_dssp             CCCSSS----GGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT
T ss_pred             CcCCCC----cchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH
Confidence            544431    1122334789999999999999999976432    2333444555443

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.29  E-value=1.3e-11  Score=102.54  Aligned_cols=85  Identities=18%  Similarity=0.102  Sum_probs=62.8

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~   65 (169)
                      ..+|||||||+|     +++..|..+|++||+|+.|++.|+++++                           +++|.|.+
T Consensus       121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~  200 (334)
T 1xj5_A          121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV  200 (334)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEE
Confidence            578999999999     6666677899999999999999987542                           23455554


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ..++|+-    ....+....++++++++|||||.|++.+..
T Consensus       201 d~~~p~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  237 (334)
T 1xj5_A          201 DSSDPIG----PAKELFEKPFFQSVARALRPGGVVCTQAES  237 (334)
T ss_dssp             CCCCTTS----GGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCccC----cchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            4333321    112233578999999999999999997543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.29  E-value=5.7e-12  Score=100.91  Aligned_cols=80  Identities=9%  Similarity=0.092  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCCCCcc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~d~~f   72 (169)
                      ++.+|||||||+|     ++..  +.+|+|+|+|+.|++.|++++.                   +++|.|.+...    
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~----  193 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVV----  193 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSS----
T ss_pred             CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccc----
Confidence            3678999999999     4444  5699999999999999988754                   12333322111    


Q ss_pred             cccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         73 KRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        73 ~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        .|+...-....+++++.++|||||.+++.+
T Consensus       194 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          194 --FMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             --GGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --hhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence              111111113589999999999999988865

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.29  E-value=6.4e-12  Score=97.44  Aligned_cols=84  Identities=11%  Similarity=0.131  Sum_probs=58.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCCCCccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~d~~f~   73 (169)
                      +.+|||||||+|     ++..  ..+++|+|+|+.|++.|++++.                   +++|.|.+..     +
T Consensus        38 ~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~-----~  110 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCL-----D  110 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECT-----T
T ss_pred             CCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcC-----c
Confidence            679999999999     4444  4689999999999999987653                   1233333221     0


Q ss_pred             ccchhh-hcccHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086         74 RCKYKW-RIINQNLLSEYAYVLSEGGIVYTITDVKD  108 (169)
Q Consensus        74 ~~h~~~-~~~~~~~l~~~~rvLkpGG~l~i~~d~~~  108 (169)
                      ..++.. .-....++++++++|||||.+++.+..+.
T Consensus       111 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  146 (246)
T 1y8c_A          111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYY  146 (246)
T ss_dssp             GGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred             cccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHH
Confidence            111110 00135799999999999999999776554

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.29  E-value=3e-12  Score=101.61  Aligned_cols=86  Identities=12%  Similarity=0.103  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---cccceEEEeCCCCcccccchhhh---c-ccH
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---LYLKKMFFLYPDPHFKRCKYKWR---I-INQ   84 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---~~~d~v~~~f~d~~f~~~h~~~~---~-~~~   84 (169)
                      ++.+|||||||+|     ++.  ++.+|+|+|+|+.|++.|+++..   ...|...+.+++..||..+....   + ...
T Consensus        34 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~  111 (261)
T 3ege_A           34 KGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLE  111 (261)
T ss_dssp             TTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHH
T ss_pred             CCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhccCHH
Confidence            3689999999999     444  67899999999999998876532   00111112333444443211100   0 136


Q ss_pred             HHHHHHHHhccCCcEEEEEeC
Q psy13086         85 NLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      .++++++++|| ||.+++.+.
T Consensus       112 ~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A          112 KSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             HHHHHHHHHBC-SSCEEEEEE
T ss_pred             HHHHHHHHHhC-CcEEEEEEc
Confidence            89999999999 998887753

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.28  E-value=4.2e-12  Score=99.36  Aligned_cols=84  Identities=10%  Similarity=0.043  Sum_probs=57.3

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-ccc--ceEEEeC----------CCCcccccc--
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYL--KKMFFLY----------PDPHFKRCK--   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~--d~v~~~f----------~d~~f~~~h--   76 (169)
                      ..+|||||||+|     ++...| +.+++|+|+|+.|++.|++++. ..+  +.+.+..          ++..||..-  
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d  136 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ  136 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence            458999999999     666654 7899999999999999998764 111  1232211          122333210  


Q ss_pred             -hhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         77 -YKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        77 -~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                       .+.  ....+++++.++|||||.+++.
T Consensus       137 ~~~~--~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          137 VSPM--DLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             CCTT--THHHHHHHHHHHEEEEEEEEET
T ss_pred             CcHH--HHHHHHHHHHHHcCCCcEEEEe
Confidence             001  1256899999999999999883

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.28  E-value=3.5e-12  Score=105.65  Aligned_cols=98  Identities=16%  Similarity=0.168  Sum_probs=65.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------cccceEEEeCCCCcccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------LYLKKMFFLYPDPHFKR   74 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------~~~d~v~~~f~d~~f~~   74 (169)
                      ..+|||||||+|     +++..|..+++|+|+|+.|++.|++++.                  +++|.|.+..+   |..
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Iv~~~~---~~~  273 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPP---FHD  273 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEEEECCC---CCS
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeEEEECCC---ccc
Confidence            568999999999     6667788899999999999999998754                  23333332211   110


Q ss_pred             cchhhhcccHHHHHHHHHhccCCcEEEEEeCC-hHHHHHHHHHHh
Q psy13086         75 CKYKWRIINQNLLSEYAYVLSEGGIVYTITDV-KDLHDWIVSHFT  118 (169)
Q Consensus        75 ~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~-~~~~~~~~~~~~  118 (169)
                      ......-....++++++++|||||.+++.+.. ..|..++...+.
T Consensus       274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~  318 (343)
T 2pjd_A          274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFG  318 (343)
T ss_dssp             SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHS
T ss_pred             CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcC
Confidence            00000001367999999999999999998643 345555555443

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.28  E-value=1.9e-11  Score=99.57  Aligned_cols=86  Identities=13%  Similarity=0.057  Sum_probs=61.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..+|||||||+|     +++..+..++++||+|+.|++.|+++++                          +++|.|.+.
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d  170 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  170 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence            578999999999     5555577899999999999999987641                          235666655


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      .++|+...   ...+...+++++++++|||||.+++.+..
T Consensus       171 ~~~~~~~~---~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          171 STDPTAGQ---GGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             C-------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCcccCc---hhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            55442211   11223478999999999999999998643

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.28  E-value=1.3e-11  Score=99.52  Aligned_cols=88  Identities=14%  Similarity=0.109  Sum_probs=59.8

Q ss_pred             CCeEEEEcCcc---c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeCCC----------------Cc
Q psy13086         18 KVEFVDVGCGK---L-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLYPD----------------PH   71 (169)
Q Consensus        18 ~~~iLDiGCG~---G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f~d----------------~~   71 (169)
                      ..+|||||||+   |     +++.+|+.+|+|+|+|+.|++.|++++.  ..+..+...+.+                ..
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~  157 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFSR  157 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTTS
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCCC
Confidence            47899999999   9     3445788999999999999999998764  111111111111                12


Q ss_pred             ccc------cchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         72 FKR------CKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        72 f~~------~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      |+.      .|+...-....++++++++|||||.|++...
T Consensus       158 ~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~  197 (274)
T 2qe6_A          158 PAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL  197 (274)
T ss_dssp             CCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            221      2332211136899999999999999999853

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.28  E-value=4.3e-12  Score=102.31  Aligned_cols=76  Identities=11%  Similarity=0.120  Sum_probs=56.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPH   71 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~   71 (169)
                      +.+|||+|||+|     ++...+. +|+|+|+|+.|++.|++++.                     .++|.|.+..|.  
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~--  202 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV--  202 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS--
T ss_pred             CCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch--
Confidence            689999999999     4555444 79999999999999998754                     123333332111  


Q ss_pred             ccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         72 FKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        72 f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                                ....+++++.++|||||.+++.+..
T Consensus       203 ----------~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          203 ----------RTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             ----------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             ----------hHHHHHHHHHHHCCCCeEEEEEEee
Confidence                      0146899999999999999997643

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.28  E-value=5.9e-12  Score=98.20  Aligned_cols=79  Identities=13%  Similarity=0.156  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYP   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~   68 (169)
                      ++.+|||||||+|     +++.. |..+++|+|+|+.|++.+.++..                      .++|.|.+..+
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~  156 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA  156 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence            3679999999999     55554 66899999999887665543321                      12444443322


Q ss_pred             CCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         69 DPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        69 d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      .++          ....+++++.++|||||.+++...
T Consensus       157 ~~~----------~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          157 QPD----------QTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             CTT----------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             Ccc----------HHHHHHHHHHHHcCCCeEEEEEEc
Confidence            111          013568899999999999999643

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.28  E-value=4.5e-12  Score=94.44  Aligned_cols=79  Identities=19%  Similarity=0.162  Sum_probs=55.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPD   69 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d   69 (169)
                      +.+|||+|||+|     ++.. +..+++|+|+|+.|++.|++++.                       ..+|.|.+   +
T Consensus        32 ~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~---~  107 (177)
T 2esr_A           32 GGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL---D  107 (177)
T ss_dssp             SCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE---C
T ss_pred             CCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEE---C
Confidence            678999999999     3444 55799999999999999987653                       12333322   2


Q ss_pred             CcccccchhhhcccHHHHHHHH--HhccCCcEEEEEeCC
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYA--YVLSEGGIVYTITDV  106 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~--rvLkpGG~l~i~~d~  106 (169)
                      +.+..   .   ....+++.+.  ++|||||.+++.+..
T Consensus       108 ~~~~~---~---~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          108 PPYAK---E---TIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             CSSHH---H---HHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCCc---c---hHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            21110   0   1246777776  999999999998644

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.27  E-value=2.3e-11  Score=98.48  Aligned_cols=84  Identities=17%  Similarity=0.043  Sum_probs=64.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..+|||||||+|     +++..|..+++++|+++.|++.|+++++                          +++|.|.+.
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d  158 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD  158 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEc
Confidence            578999999999     5556667899999999999999987642                          346666655


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      .++|+..    ...+...+++++++++|||||.+++.+.
T Consensus       159 ~~~~~~~----~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          159 SSDPIGP----AETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             CCCTTTG----GGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCCCc----chhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            5544311    1233447899999999999999999854

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.27  E-value=1.4e-11  Score=102.31  Aligned_cols=91  Identities=13%  Similarity=0.039  Sum_probs=63.3

Q ss_pred             CCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~   70 (169)
                      +..|||+|||+|     ++... |+..++|+|+|+.|++.|++|+.                     ..+|.|..+   |
T Consensus       204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~n---p  280 (354)
T 3tma_A          204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILAN---P  280 (354)
T ss_dssp             TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEEC---C
T ss_pred             CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEEC---C
Confidence            578999999999     55555 77899999999999999998764                     122333321   1


Q ss_pred             cccccch---hhhcccHHHHHHHHHhccCCcEEEEEeCChHHHH
Q psy13086         71 HFKRCKY---KWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHD  111 (169)
Q Consensus        71 ~f~~~h~---~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~  111 (169)
                      -+..+..   ...-....+++++.++|||||.+++.+..+.+..
T Consensus       281 Pyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~  324 (354)
T 3tma_A          281 PHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLK  324 (354)
T ss_dssp             CSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHH
T ss_pred             CCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHH
Confidence            1111100   0000126799999999999999999998876654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.26  E-value=3.2e-12  Score=102.15  Aligned_cols=91  Identities=16%  Similarity=0.072  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc-----ccceEEE-----eC-CCCccccc-----
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL-----YLKKMFF-----LY-PDPHFKRC-----   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~-----~~d~v~~-----~f-~d~~f~~~-----   75 (169)
                      ++.+|||||||+|     ++.. +..+++|+|+|+.|++.|++++..     .+..+..     .+ ++..||..     
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  142 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  142 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence            3679999999999     3333 456999999999999999987641     1111111     22 23334431     


Q ss_pred             -chh--hhcccHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086         76 -KYK--WRIINQNLLSEYAYVLSEGGIVYTITDVKD  108 (169)
Q Consensus        76 -h~~--~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~  108 (169)
                       |+.  ..-....++++++++|||||.+++.+....
T Consensus       143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  178 (298)
T 1ri5_A          143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD  178 (298)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence             221  000136799999999999999999886654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.26  E-value=3.9e-11  Score=96.84  Aligned_cols=99  Identities=18%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..+|||||||+|     +++..+..++++||+++.|++.|+++++                          .++|.|.+.
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d  155 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD  155 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence            578999999999     5555566899999999999999987641                          245666654


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC----hHHHHHHHHHHhcC
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV----KDLHDWIVSHFTEH  120 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~----~~~~~~~~~~~~~~  120 (169)
                      .++|+...    ..+...+++++++++|||||.+++.+..    ......+.+.+.+.
T Consensus       156 ~~~~~~~~----~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~  209 (275)
T 1iy9_A          156 STEPVGPA----VNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI  209 (275)
T ss_dssp             CSSCCSCC----CCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred             CCCCCCcc----hhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh
Confidence            44432111    1122468999999999999999998643    23344445555544

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.26  E-value=6.3e-12  Score=95.95  Aligned_cols=136  Identities=8%  Similarity=-0.043  Sum_probs=74.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEe----CCCCcccc------cchhhhcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFL----YPDPHFKR------CKYKWRII   82 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~----f~d~~f~~------~h~~~~~~   82 (169)
                      +.+|||||||+|     ++..  ..+++|+|+|+.|++.|+++-...+..+...    +++..||.      .|+...-.
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~  124 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDR  124 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSCHHH
T ss_pred             CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCCHHH
Confidence            579999999999     4444  5799999999999999986321111111100    23333332      12211101


Q ss_pred             cHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc--CCCce-ecCccccccCCCCCCCCCCCCHHHHHHHHcCCCeE
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE--HPLFV-ECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKF  159 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~--~~~f~-~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i~  159 (169)
                      ...++++++++|||||.+++.+...... +....+..  .+.+. ..+....++   .........+++....+.|..+-
T Consensus       125 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~aGf~v~  200 (218)
T 3ou2_A          125 FEAFWESVRSAVAPGGVVEFVDVTDHER-RLEQQDDSEPEVAVRRTLQDGRSFR---IVKVFRSPAELTERLTALGWSCS  200 (218)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEECCCC-------------CEEEEECTTSCEEE---EECCCCCHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEEeCCCCcc-ccchhhhcccccceeeecCCcchhh---HhhcCCCHHHHHHHHHHCCCEEE
Confidence            2579999999999999999987543211 11111111  11111 111111110   00123566778888899998853

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.25  E-value=1e-11  Score=96.20  Aligned_cols=88  Identities=11%  Similarity=0.027  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhcc--ccceEEEeCCC--------Ccccccchh--
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWSL--YLKKMFFLYPD--------PHFKRCKYK--   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~~--~~d~v~~~f~d--------~~f~~~h~~--   78 (169)
                      ++.+|||+|||+|     ++... |..+++|+|+|+.|++.+++++..  .+..+...+.+        ..||..-..  
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~  152 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA  152 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence            3679999999999     55553 567999999999999998876541  11111110100        112211000  


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .......+++++.++|||||.+++..
T Consensus       153 ~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          153 QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            00001245999999999999999863

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.25  E-value=4.1e-12  Score=100.34  Aligned_cols=82  Identities=12%  Similarity=0.149  Sum_probs=53.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------cccceEE-EeCCC-----Ccccccchhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------LYLKKMF-FLYPD-----PHFKRCKYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------~~~d~v~-~~f~d-----~~f~~~h~~~   79 (169)
                      +.+|||||||||     +++. ...+|+|||+|+.|++.|+++.+       ..+..+. -.++.     ..++..-.  
T Consensus        38 g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~--  114 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFI--  114 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSS--
T ss_pred             CCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhh--
Confidence            568999999999     4444 33599999999999999877533       0111000 00111     11221100  


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        ....++++++|+|||||.+++..
T Consensus       115 --~l~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          115 --SLDLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             --CGGGTHHHHHHHSCTTCEEEEEE
T ss_pred             --hHHHHHHHHHHhccCCCEEEEEE
Confidence              12579999999999999999864

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.25  E-value=1e-11  Score=98.84  Aligned_cols=106  Identities=18%  Similarity=0.117  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe-------CCCCcccccchhh-hcc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL-------YPDPHFKRCKYKW-RII   82 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~-------f~d~~f~~~h~~~-~~~   82 (169)
                      ++.+|||+|||+|     +++..  .+++|+|+|+.+++.|++++. ..++ +.+.       +++..||.....- .-.
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~~g--~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~~~~fD~Vv~n~~~~~  196 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALPFGPFDLLVANLYAEL  196 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGGGCCEEEEEEECCHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCcCCCCCEEEECCcHHH
Confidence            3679999999999     33333  399999999999999998764 2222 1111       2222233211000 001


Q ss_pred             cHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      ...+++++.++|||||.++++.........+.+.+..++ |...
T Consensus       197 ~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~G-f~~~  239 (254)
T 2nxc_A          197 HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAG-FRPL  239 (254)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTT-CEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCC-CEEE
Confidence            257999999999999999997655554555666666553 5543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.24  E-value=1e-11  Score=91.28  Aligned_cols=78  Identities=13%  Similarity=0.069  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------c---ccceEEEeC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------L---YLKKMFFLY   67 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~---~~d~v~~~f   67 (169)
                      ++.+|||+|||+|     ++...+  .++|+|+|+.|++.|++++.                     .   ++|.|.+. 
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~-  117 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA-  117 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC-
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC-
Confidence            3678999999999     444443  49999999999999987542                     0   35555443 


Q ss_pred             CCCcccccchhhhcccHHHHHHHH--HhccCCcEEEEEeCC
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYA--YVLSEGGIVYTITDV  106 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~--rvLkpGG~l~i~~d~  106 (169)
                        +.+. .      ..+.+++.+.  ++|||||.+++.+..
T Consensus       118 --~~~~-~------~~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          118 --PPYA-M------DLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             --CCTT-S------CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             --CCCc-h------hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence              2111 0      1235677777  999999999998643

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.24  E-value=4.1e-11  Score=98.37  Aligned_cols=86  Identities=13%  Similarity=0.038  Sum_probs=63.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~   65 (169)
                      ..+|||||||+|     +++..+..+++|||+|+.|++.|+++++                           +++|.|.+
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII  157 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence            578999999999     5666677899999999999999986531                           34666666


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..++++.. ......+...+++++++++|||||.+++.+
T Consensus       158 d~~~~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          158 DLTDPVGE-DNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             ECCCCBST-TCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCcccc-cCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            65555410 000123335789999999999999999874

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.24  E-value=2.7e-11  Score=102.26  Aligned_cols=93  Identities=15%  Similarity=0.195  Sum_probs=64.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~f   72 (169)
                      +.+|||+|||+|     ++..  +.+|+|+|+|+.|++.|++++.                    .++|.|.+..|   |
T Consensus       234 ~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp---~  308 (381)
T 3dmg_A          234 GRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPP---F  308 (381)
T ss_dssp             TCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCC---C
T ss_pred             CCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCc---h
Confidence            579999999999     4444  5799999999999999998754                    23444333211   1


Q ss_pred             cccchhhh---cccHHHHHHHHHhccCCcEEEEEeCC-hHHHHHHHHHHh
Q psy13086         73 KRCKYKWR---IINQNLLSEYAYVLSEGGIVYTITDV-KDLHDWIVSHFT  118 (169)
Q Consensus        73 ~~~h~~~~---~~~~~~l~~~~rvLkpGG~l~i~~d~-~~~~~~~~~~~~  118 (169)
                         |+...   -....+++++.++|||||.+++++.. ..|..++.+.+.
T Consensus       309 ---~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~  355 (381)
T 3dmg_A          309 ---HVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG  355 (381)
T ss_dssp             ---CTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS
T ss_pred             ---hhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc
Confidence               11000   01357999999999999999998643 356666666554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.24  E-value=1.5e-11  Score=101.65  Aligned_cols=82  Identities=9%  Similarity=0.123  Sum_probs=62.9

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCCC
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d~   70 (169)
                      .+|||||||+|     +++.+|+.++++||+++.|++.|++++.                       +++|.|.+...++
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            48999999999     5666899999999999999999998642                       3466666544333


Q ss_pred             cccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ...    ...+...+++++++++|||||.|++.+
T Consensus       171 ~~~----~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          171 AIT----PQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             SCC----CGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccc----chhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            211    122345789999999999999999875

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.24  E-value=2.1e-11  Score=91.04  Aligned_cols=83  Identities=13%  Similarity=0.148  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------cccceEEEeCCCCccccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------LYLKKMFFLYPDPHFKRC   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------~~~d~v~~~f~d~~f~~~   75 (169)
                      ++.+|||||||+|     ++..  +.+++|+|+|+.|++.|+++++                +++|.|.+..+.     .
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~-----~  118 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNV-----M  118 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCC-----G
T ss_pred             CCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcH-----H
Confidence            3679999999999     3333  5699999999999999998753                223333221100     1


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ++...-....+++++.++|||||.+++....
T Consensus       119 ~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~  149 (195)
T 3cgg_A          119 GFLAEDGREPALANIHRALGADGRAVIGFGA  149 (195)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             hhcChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            1110001257999999999999999997643

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.23  E-value=8.5e-12  Score=96.64  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=55.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------cccceEEEeCCCCcccccch
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------LYLKKMFFLYPDPHFKRCKY   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------~~~d~v~~~f~d~~f~~~h~   77 (169)
                      +.+|||||||+|     ++...+  +++|+|+|+.|++.|+++.+               .++|.|...+.     ..++
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~-----~~~~  113 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFS-----SVGY  113 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTT-----GGGG
T ss_pred             CCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCc-----hHhh
Confidence            679999999999     444443  89999999999999998753               23333331110     1111


Q ss_pred             hhh-cccHHHHHHHHHhccCCcEEEEEe
Q psy13086         78 KWR-IINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        78 ~~~-~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ... -....++++++++|||||.+++.+
T Consensus       114 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          114 LKTTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             CCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            100 012579999999999999999864

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.23  E-value=1.3e-11  Score=96.14  Aligned_cols=86  Identities=14%  Similarity=0.213  Sum_probs=58.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeCC-----------CCcccccchhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLYP-----------DPHFKRCKYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f~-----------d~~f~~~h~~~   79 (169)
                      ..+|||||||+|     ++...|+.+|+|+|+|+.+++.|++++. ..+ +.+.+...           +..||..-...
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  134 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA  134 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence            578999999999     6677788899999999999999998754 111 11211111           11222211000


Q ss_pred             h-cccHHHHHHHHHhccCCcEEEEE
Q psy13086         80 R-IINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        80 ~-~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      . -....+++++.++|||||.+++.
T Consensus       135 ~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          135 AKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             GGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            0 01267999999999999999886

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.23  E-value=3.3e-11  Score=97.43  Aligned_cols=82  Identities=16%  Similarity=0.051  Sum_probs=61.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh-------------c------------------cccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW-------------S------------------LYLK   61 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~-------------~------------------~~~d   61 (169)
                      ..+|||||||+|     +++. +..+++|||+++.|++.|++++             .                  +++|
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~fD  154 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD  154 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCee
Confidence            578999999999     5555 7789999999999999998765             1                  1356


Q ss_pred             eEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         62 KMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        62 ~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .|.+..++|+-.    ...+...+++++++++|+|||.+++.+
T Consensus       155 ~Ii~d~~~~~~~----~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          155 VIIADSTDPVGP----AKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCCCCCc----chhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            666555544311    112234789999999999999999875

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.23  E-value=5.7e-11  Score=97.28  Aligned_cols=83  Identities=12%  Similarity=0.043  Sum_probs=59.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..+|||||||+|     +++..|..++++||+|+.|++.|+++++                          +++|.|.+.
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d  175 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD  175 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEEC
Confidence            578999999999     6666677899999999999999987531                          245666555


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .+++....    ..+...+++++++++|||||.+++.+
T Consensus       176 ~~~~~~~~----~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          176 SSDPMGPA----ESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             CC---------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCcc----hhhhHHHHHHHHHhccCCCeEEEEec
Confidence            44432110    01123579999999999999999876

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.23  E-value=3.6e-12  Score=99.15  Aligned_cols=83  Identities=6%  Similarity=0.045  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----cccce-EEEeCC-CCcccccchhhhcccHH
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----LYLKK-MFFLYP-DPHFKRCKYKWRIINQN   85 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----~~~d~-v~~~f~-d~~f~~~h~~~~~~~~~   85 (169)
                      ++.+|||||||+|     ++..  ..+|+|+|+|+.|++.|+++.+    ...|. -.+.++ +..||......  ....
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~--~~~~  123 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR--GPTS  123 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES--CCSG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC--CHHH
Confidence            3689999999999     4554  5799999999999999998733    11111 012233 34455332211  1357


Q ss_pred             HHHHHHHhccCCcEEEEE
Q psy13086         86 LLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        86 ~l~~~~rvLkpGG~l~i~  103 (169)
                      ++++++++|||||.++..
T Consensus       124 ~l~~~~~~LkpgG~l~~~  141 (226)
T 3m33_A          124 VILRLPELAAPDAHFLYV  141 (226)
T ss_dssp             GGGGHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCcEEEEe
Confidence            899999999999999843

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.22  E-value=2.5e-11  Score=96.83  Aligned_cols=99  Identities=10%  Similarity=0.153  Sum_probs=65.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc--------------------------------cc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL--------------------------------YL   60 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~--------------------------------~~   60 (169)
                      +.+|||||||+|     ++.+.|..+++|||+++.|++.|++++..                                ++
T Consensus        37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f  116 (260)
T 2ozv_A           37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF  116 (260)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred             CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence            578999999999     67788888999999999999999876431                                12


Q ss_pred             ceEEEeCCCCccccc------------chhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc
Q psy13086         61 KKMFFLYPDPHFKRC------------KYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE  119 (169)
Q Consensus        61 d~v~~~f~d~~f~~~------------h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~  119 (169)
                      |.|...  .|++...            ++........+++.+.++|||||.|++........+ +...+..
T Consensus       117 D~Vv~n--PPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~l~~  184 (260)
T 2ozv_A          117 HHVIMN--PPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAE-IIAACGS  184 (260)
T ss_dssp             EEEEEC--CCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHH-HHHHHTT
T ss_pred             CEEEEC--CCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHH-HHHHHHh
Confidence            322221  1111110            000011136789999999999999999877665443 4444443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.22  E-value=1.8e-11  Score=99.54  Aligned_cols=90  Identities=20%  Similarity=0.251  Sum_probs=60.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc-----------ccceEEE-----e----CCCC--
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL-----------YLKKMFF-----L----YPDP--   70 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~-----------~~d~v~~-----~----f~d~--   70 (169)
                      ..+|||||||+|     ++. .+..+++|+|+|+.|++.|+++...           .+..+..     .    ++++  
T Consensus        35 ~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           35 DITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            678999999999     333 3567999999999999999876531           1111111     1    2222  


Q ss_pred             cccc------cchh-hhc-ccHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086         71 HFKR------CKYK-WRI-INQNLLSEYAYVLSEGGIVYTITDVKD  108 (169)
Q Consensus        71 ~f~~------~h~~-~~~-~~~~~l~~~~rvLkpGG~l~i~~d~~~  108 (169)
                      .||.      .|+. ... ....++++++++|||||.+++.+...+
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  159 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSF  159 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChH
Confidence            4543      2332 110 125899999999999999999886654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.22  E-value=2.9e-11  Score=103.23  Aligned_cols=85  Identities=16%  Similarity=0.039  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------ccc--ceEEEeCCC---C-------c
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------LYL--KKMFFLYPD---P-------H   71 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------~~~--d~v~~~f~d---~-------~   71 (169)
                      ++.+|||||||+|     +|...+...++|||+|+.|++.|++++.        ..+  +.|.+...|   .       .
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~  252 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIAN  252 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCC
Confidence            4689999999999     5555665569999999999999876431        011  222221111   0       0


Q ss_pred             ccccc-----hhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         72 FKRCK-----YKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        72 f~~~h-----~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ++..-     +..  .....|++++|+|||||+|++.
T Consensus       253 aDVVf~Nn~~F~p--dl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          253 TSVIFVNNFAFGP--EVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             CSEEEECCTTCCH--HHHHHHHHHHTTSCTTCEEEES
T ss_pred             ccEEEEcccccCc--hHHHHHHHHHHcCCCCcEEEEe
Confidence            11000     000  1246788999999999999874

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.22  E-value=3.4e-11  Score=99.05  Aligned_cols=102  Identities=11%  Similarity=0.109  Sum_probs=65.3

Q ss_pred             CCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhcc------------ccceEEEe----------CC
Q psy13086         17 KKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWSL------------YLKKMFFL----------YP   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~~------------~~d~v~~~----------f~   68 (169)
                      ++.+|||||||+|     ++.. .|..+++|+|+|+.+++.|++++..            ..+.+.+.          ++
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~  184 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK  184 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence            3679999999999     5555 4668999999999999999886531            01222211          11


Q ss_pred             CCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc
Q psy13086         69 DPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE  119 (169)
Q Consensus        69 d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~  119 (169)
                      +..||..... ......+++++.++|||||.+++.+..........+.+..
T Consensus       185 ~~~fD~V~~~-~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~  234 (336)
T 2b25_A          185 SLTFDAVALD-MLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRT  234 (336)
T ss_dssp             ---EEEEEEC-SSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCeeEEEEC-CCCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence            2223321100 0011347999999999999999988776655555555554

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.20  E-value=1.5e-11  Score=96.60  Aligned_cols=39  Identities=13%  Similarity=-0.095  Sum_probs=31.8

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.+|||||||+|     ++...+ .+|+|+|+|+.|++.|++++.
T Consensus        57 ~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~  100 (265)
T 2i62_A           57 GELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLK  100 (265)
T ss_dssp             EEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHT
T ss_pred             CCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHh
Confidence            578999999999     333332 489999999999999988764

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.20  E-value=2.1e-11  Score=98.02  Aligned_cols=89  Identities=12%  Similarity=0.111  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe------CC-CCcccccchhhhccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL------YP-DPHFKRCKYKWRIIN   83 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~------f~-d~~f~~~h~~~~~~~   83 (169)
                      ++.+|||+|||+|     +|...+..+|+|+|+|+.|++.|++++. ..++.+.+.      ++ +..||..-...-...
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~~~  198 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVHKT  198 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCSSG
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcccH
Confidence            4689999999999     6666677799999999999999998765 222211111      00 111221100000012


Q ss_pred             HHHHHHHHHhccCCcEEEEEeC
Q psy13086         84 QNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      ..+++++.++|||||.+++.+.
T Consensus       199 ~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          199 HKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             GGGHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEEc
Confidence            4689999999999999998764

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.19  E-value=5.3e-11  Score=99.15  Aligned_cols=86  Identities=10%  Similarity=0.068  Sum_probs=60.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEeCCC-----C-ccccc------
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFLYPD-----P-HFKRC------   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~f~d-----~-~f~~~------   75 (169)
                      ..+|||||||+|     +++.+|+.+++|+|+ +.|++.|++++.     ..+..+...+.+     | .||..      
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vl  258 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFL  258 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCS
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechh
Confidence            579999999999     777889999999999 999999998765     122222222211     1 34432      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |+...-....++++++++|||||++++..
T Consensus       259 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          259 DCFSEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             TTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            11111012468999999999999999875

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.19  E-value=4.6e-11  Score=98.38  Aligned_cols=83  Identities=17%  Similarity=0.044  Sum_probs=57.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..+|||||||+|     +++..|..+++++|+|+.|++.|+++++                          +++|.|.+.
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d  188 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD  188 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence            578999999999     5666677899999999999999987652                          235555554


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .++|.-.    ...+...++++++.++|||||.+++.+
T Consensus       189 ~~~~~~~----~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          189 SSDPVGP----AESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CC-----------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCCCc----chhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            4333211    112223689999999999999999975

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.19  E-value=2.4e-11  Score=102.53  Aligned_cols=80  Identities=14%  Similarity=0.045  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh-c------------------cccceEEEeCCCCcc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW-S------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~-~------------------~~~d~v~~~f~d~~f   72 (169)
                      ++.+|||||||+|     ++..  ..+++|+|+|+.|++.|+++- .                  +++|.|.....-   
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl---  181 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTL---  181 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCG---
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChH---
Confidence            3679999999999     3333  459999999999999998651 1                  456766654321   


Q ss_pred             cccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         73 KRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        73 ~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                         ||..  ....++++++++|||||.+++.+..
T Consensus       182 ---~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          182 ---CHIP--YVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             ---GGCT--THHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---HhcC--CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence               1111  1368999999999999999998654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.19  E-value=2.2e-11  Score=90.91  Aligned_cols=80  Identities=13%  Similarity=0.128  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEE
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFF   65 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~   65 (169)
                      ++.+|||+|||+|     ++. .+..+++|+|+|+.|++.|++++.                          .++|.|.+
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            3679999999999     233 455799999999999999987653                          12333322


Q ss_pred             eCCCCcccccchhhhcccHHHHHHH--HHhccCCcEEEEEeCC
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEY--AYVLSEGGIVYTITDV  106 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~--~rvLkpGG~l~i~~d~  106 (169)
                         ++.+..      ......++.+  .++|||||.+++.+..
T Consensus       123 ---~~~~~~------~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          123 ---DPPYAK------QEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             ---CCCGGG------CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             ---CCCCCc------hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence               221110      0124667777  8999999999997643

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.19  E-value=1.9e-11  Score=93.43  Aligned_cols=86  Identities=13%  Similarity=0.081  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeC--------CCCcccccchhhhcc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLY--------PDPHFKRCKYKWRII   82 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f--------~d~~f~~~h~~~~~~   82 (169)
                      ++.+|||||||+|     ++..  ..+++|+|+|+.+++.|++++. ..++.+.+..        ++..||......  .
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~--~  152 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTA--A  152 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESS--B
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEcc--c
Confidence            3689999999999     4444  5799999999999999998764 1111121111        111222111000  0


Q ss_pred             cHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ...+.+++.++|||||++++....
T Consensus       153 ~~~~~~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          153 PPEIPTALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CSSCCTHHHHTEEEEEEEEEEECS
T ss_pred             hhhhhHHHHHhcccCcEEEEEEcC
Confidence            012234688999999999997654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.19  E-value=6.3e-11  Score=96.01  Aligned_cols=86  Identities=12%  Similarity=0.164  Sum_probs=59.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------ccc---ceEEEeCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYL---KKMFFLYPD   69 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~---d~v~~~f~d   69 (169)
                      +.+|||||||+|     ++.. |+.+++|+|+|+.|++.|++++.                    .++   |.|..+-| 
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP-  201 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP-  201 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC-
T ss_pred             CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC-
Confidence            568999999999     6667 88999999999999999988753                    234   55543311 


Q ss_pred             Cccccc-c------hhh--hcc----cHHHHHHHH-HhccCCcEEEEEeCC
Q psy13086         70 PHFKRC-K------YKW--RII----NQNLLSEYA-YVLSEGGIVYTITDV  106 (169)
Q Consensus        70 ~~f~~~-h------~~~--~~~----~~~~l~~~~-rvLkpGG~l~i~~d~  106 (169)
                       +.... +      +..  .+.    ...+++++. +.|+|||.+++....
T Consensus       202 -yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~  251 (284)
T 1nv8_A          202 -YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  251 (284)
T ss_dssp             -CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             -CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence             11000 0      000  000    126899999 999999999997644

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.18  E-value=4.3e-11  Score=94.93  Aligned_cols=84  Identities=13%  Similarity=0.038  Sum_probs=57.2

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeCC---------------CCcccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLYP---------------DPHFKR   74 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f~---------------d~~f~~   74 (169)
                      ..+|||||||+|     ++...| +.+++|+|+|+.|++.|++++. ..+ +.+.+...               +..||.
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  159 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  159 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence            578999999999     666666 7899999999999999988754 111 11211100               122332


Q ss_pred             cc---hhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         75 CK---YKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        75 ~h---~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .-   .+.  ....+++++.++|||||.+++.
T Consensus       160 V~~d~~~~--~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          160 IFVDADKD--NYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             EEECSCST--THHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEcCchH--HHHHHHHHHHHhCCCCeEEEEe
Confidence            10   011  1367999999999999999875

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.18  E-value=6e-12  Score=99.62  Aligned_cols=75  Identities=11%  Similarity=0.071  Sum_probs=55.7

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc----------------------------cccceE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS----------------------------LYLKKM   63 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~----------------------------~~~d~v   63 (169)
                      ..+|||||||+|     +|...| +.+|+|||+|+.|++.|++++.                            +++|.|
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V  140 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI  140 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence            578999999999     666665 7899999999999998887653                            123333


Q ss_pred             EEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         64 FFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        64 ~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ++..+         ..  ....+++++.++|||||.+++.
T Consensus       141 ~~d~~---------~~--~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          141 FIDAD---------KT--NYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             EEESC---------GG--GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCC---------hH--HhHHHHHHHHHhcCCCeEEEEE
Confidence            32211         01  1256899999999999999984

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.17  E-value=3.3e-11  Score=92.43  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=54.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc--ceEEEeC----------CCCc-ccccchh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL--KKMFFLY----------PDPH-FKRCKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~--d~v~~~f----------~d~~-f~~~h~~   78 (169)
                      +.+|||+|||+|     ++.. ...+|+|+|+|+.|++.|++++. ..+  +.+.+..          ++.. ||..-..
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            578999999999     2233 23589999999999999988753 111  1111110          0112 2211000


Q ss_pred             ---hhcccHHHHHHH--HHhccCCcEEEEEeCCh
Q psy13086         79 ---WRIINQNLLSEY--AYVLSEGGIVYTITDVK  107 (169)
Q Consensus        79 ---~~~~~~~~l~~~--~rvLkpGG~l~i~~d~~  107 (169)
                         ..-....+++++  .++|||||.+++.+...
T Consensus       133 ~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          133 PPFHFNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence               000125688888  67899999999986443

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.17  E-value=1.6e-11  Score=100.27  Aligned_cols=74  Identities=15%  Similarity=0.164  Sum_probs=51.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~f   72 (169)
                      +.+|||||||||     +++. +..+|+|||+|+.|++.+.++-+                    .++|.+.+..   .|
T Consensus        86 g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~---sf  161 (291)
T 3hp7_A           86 DMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDV---SF  161 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECC---SS
T ss_pred             ccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEe---eH
Confidence            568999999999     3333 55699999999999998644211                    0133332211   11


Q ss_pred             cccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         73 KRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        73 ~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                         ++     ...+|.+++|+|||||.+++.
T Consensus       162 ---~s-----l~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          162 ---IS-----LNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             ---SC-----GGGTHHHHHHHSCTTCEEEEE
T ss_pred             ---hh-----HHHHHHHHHHHcCcCCEEEEE
Confidence               11     256899999999999999886

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.17  E-value=4e-11  Score=91.88  Aligned_cols=89  Identities=11%  Similarity=0.159  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe-------CC-CCcccccchhhhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL-------YP-DPHFKRCKYKWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~-------f~-d~~f~~~h~~~~~   81 (169)
                      ++.+|||||||+|     ++... |..+++|+|+|+.+++.|++++. ..++.+.+.       ++ +..||......  
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~--  154 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTA--  154 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESS--
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECC--
Confidence            3679999999999     55554 55799999999999999988754 111111111       11 11233211000  


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                      ....+.+++.++|||||.+++.....
T Consensus       155 ~~~~~~~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          155 AGPKIPEPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             BBSSCCHHHHHTEEEEEEEEEEESSS
T ss_pred             chHHHHHHHHHHcCCCcEEEEEECCC
Confidence            01123368899999999999987544

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.17  E-value=9.7e-11  Score=96.13  Aligned_cols=88  Identities=16%  Similarity=0.108  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d   69 (169)
                      ++.+|||+|||+|     ++...+ ...|+|+|+|+.|++.|++++.                     .++|.|.+..|-
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pc  197 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC  197 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCC
Confidence            3679999999999     666554 5799999999999999987653                     245555543220


Q ss_pred             ---Cccc----cc-chh-hh-----cccHHHHHHHHHhccCCcEEEEEe
Q psy13086         70 ---PHFK----RC-KYK-WR-----IINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        70 ---~~f~----~~-h~~-~~-----~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                         ..+.    .. ++. ..     -....+++++.++|||||+++++|
T Consensus       198 sg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          198 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  246 (315)
T ss_dssp             TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence               0000    00 000 00     012579999999999999999975

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.16  E-value=6.2e-11  Score=97.16  Aligned_cols=126  Identities=17%  Similarity=0.045  Sum_probs=77.8

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEeCCCC---cccc------cchh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFLYPDP---HFKR------CKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~f~d~---~f~~------~h~~   78 (169)
                      ..+|||||||+|     +++.+|+.+++++|+ +.|++.|++++.     ..+..+...+.++   .||.      .|+.
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~  248 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDW  248 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGS
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccC
Confidence            578999999999     777889999999999 999999998754     1122222222122   3342      1211


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeCChHHHH---HH-HHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHc
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHD---WI-VSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRN  154 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~---~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~  154 (169)
                      ..-....++++++++|||||++++.+.......   ++ ...+...             +    ...++..+++....+.
T Consensus       249 ~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~-------------~----~~~~t~~e~~~ll~~a  311 (332)
T 3i53_A          249 DDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYF-------------G----GKERSLAELGELAAQA  311 (332)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHH-------------S----CCCCCHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhC-------------C----CCCCCHHHHHHHHHHC
Confidence            110125799999999999999999753211100   00 0000000             0    1235567888888999


Q ss_pred             CCCeEEE
Q psy13086        155 KGEKFCA  161 (169)
Q Consensus       155 g~~i~~~  161 (169)
                      |..+..+
T Consensus       312 Gf~~~~~  318 (332)
T 3i53_A          312 GLAVRAA  318 (332)
T ss_dssp             TEEEEEE
T ss_pred             CCEEEEE
Confidence            9776544

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.16  E-value=9.7e-11  Score=87.53  Aligned_cols=102  Identities=7%  Similarity=0.075  Sum_probs=62.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------cccceEEEeCCCCcccccc-hhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------LYLKKMFFLYPDPHFKRCK-YKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------~~~d~v~~~f~d~~f~~~h-~~~   79 (169)
                      +.+|||||||+|     ++...   +++|+|+|+.|++. ..++.            +++|.|....|--+..... +..
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~   99 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGG   99 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTTBC
T ss_pred             CCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-ccCCeEEECChhhhcccCCCCEEEECCCCccCCccccccC
Confidence            579999999999     55544   99999999999987 22222            5677776532211100000 000


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                      ......+++++.+.| |||.+++.+........+.+.+.+.+ |..
T Consensus       100 ~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~g-f~~  143 (170)
T 3q87_B          100 GYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERG-YGT  143 (170)
T ss_dssp             CGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTT-CEE
T ss_pred             CcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCC-CcE
Confidence            000136888999999 99999998754444444555555443 443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.16  E-value=1.1e-10  Score=93.82  Aligned_cols=111  Identities=10%  Similarity=0.006  Sum_probs=69.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhc-------------------------cccceEEE
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWS-------------------------LYLKKMFF   65 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~-------------------------~~~d~v~~   65 (169)
                      ++.+|||+|||+|     ++...++ .+|+|+|+|+.+++.+++++.                         ..+|.|.+
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~  162 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILL  162 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEE
Confidence            3679999999999     6666565 799999999999999987643                         12444443


Q ss_pred             eCCCCcccccc--------hhhh--cccHHHHHHHHHhccCCcEEEEEeCC--hHH-HHHHHHHHhcCCCceecC
Q psy13086         66 LYPDPHFKRCK--------YKWR--IINQNLLSEYAYVLSEGGIVYTITDV--KDL-HDWIVSHFTEHPLFVECD  127 (169)
Q Consensus        66 ~f~d~~f~~~h--------~~~~--~~~~~~l~~~~rvLkpGG~l~i~~d~--~~~-~~~~~~~~~~~~~f~~~~  127 (169)
                      ..|-......+        ....  -....+++++.++|||||.++++|-.  +.. .......+..|+.|+..+
T Consensus       163 d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~~~  237 (274)
T 3ajd_A          163 DAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELII  237 (274)
T ss_dssp             EECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEEEC
T ss_pred             cCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEEec
Confidence            21110000000        0000  12367999999999999999997621  111 122233445788887654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.16  E-value=1.5e-10  Score=105.86  Aligned_cols=94  Identities=14%  Similarity=0.068  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-------cccceEE--------EeCCCCcccc-
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-------LYLKKMF--------FLYPDPHFKR-   74 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-------~~~d~v~--------~~f~d~~f~~-   74 (169)
                      ++.+|||||||+|     +++.. |..+|+|||+|+.|++.|++++.       ..+..+.        +.+++..||. 
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV  800 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG  800 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence            3678999999999     66666 45799999999999999988543       0122222        1233334443 


Q ss_pred             -----cchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHH
Q psy13086         75 -----CKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHD  111 (169)
Q Consensus        75 -----~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~  111 (169)
                           .+|...-....++++++|+|||| .+++.+...++..
T Consensus       801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~  841 (950)
T 3htx_A          801 TCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNT  841 (950)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHH
T ss_pred             EEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhh
Confidence                 22221111235899999999999 8888887765543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.15  E-value=4.1e-11  Score=97.78  Aligned_cols=86  Identities=12%  Similarity=0.065  Sum_probs=58.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEeCCC-C---cccc------cch
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFLYPD-P---HFKR------CKY   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~f~d-~---~f~~------~h~   77 (169)
                      ..+|||||||+|     +++.+|+.+++|+|+| .|++.|++++.     ..+..+...+.+ +   .||.      .|+
T Consensus       166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~  244 (335)
T 2r3s_A          166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHH  244 (335)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGG
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhcc
Confidence            679999999999     6777889999999999 99999988753     112222211111 1   1332      121


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ...-....++++++++|||||.+++.+
T Consensus       245 ~~~~~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          245 FDVATCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            111012579999999999999999875

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.14  E-value=3.3e-10  Score=87.27  Aligned_cols=79  Identities=13%  Similarity=0.094  Sum_probs=53.1

Q ss_pred             CCeEEEEcCccc-ccCcCCCCcEEEEeCCHHHHHHHHHH-hc-------------cccceEEEeCCCCcccccchhhhcc
Q psy13086         18 KVEFVDVGCGKL-YLPMFPSTLILGLEIRVKVSDYVIDE-WS-------------LYLKKMFFLYPDPHFKRCKYKWRII   82 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~~~p~~~v~GiDis~~~l~~a~~~-~~-------------~~~d~v~~~f~d~~f~~~h~~~~~~   82 (169)
                      +.+|||||||+| ++......  +|+|+|+.|++.|+++ +.             +++|.|.+...      .++..  .
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~------l~~~~--~  117 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK--IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTT------ICFVD--D  117 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC--EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESC------GGGSS--C
T ss_pred             CCcEEEeCCCCCHHHHHHHHH--hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcch------Hhhcc--C
Confidence            568999999999 32222222  9999999999999875 21             23333332211      11111  1


Q ss_pred             cHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ...+++++.++|||||.+++.+..
T Consensus       118 ~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A          118 PERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEeC
Confidence            267999999999999999998643

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.14  E-value=6.8e-11  Score=98.09  Aligned_cols=87  Identities=13%  Similarity=0.012  Sum_probs=59.8

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c----ccceEEEeCCCC---ccccc------chh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L----YLKKMFFLYPDP---HFKRC------KYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~----~~d~v~~~f~d~---~f~~~------h~~   78 (169)
                      ..+|||||||+|     ++..+|+.+++|+|+ +.|++.|++++. .    .+..+...+.++   .||..      |+.
T Consensus       183 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~  261 (374)
T 1qzz_A          183 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNW  261 (374)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGS
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCC
Confidence            679999999999     667789999999999 999999998764 1    222222222111   13321      211


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      .......++++++++|||||.+++.+.
T Consensus       262 ~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          262 SDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            110113799999999999999998765

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.14  E-value=5.7e-11  Score=98.74  Aligned_cols=84  Identities=17%  Similarity=0.224  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc----cceEE-----EeCCCCcccccch----
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY----LKKMF-----FLYPDPHFKRCKY----   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~----~d~v~-----~~f~d~~f~~~h~----   77 (169)
                      ++.+|||||||+|     +++. +..+|+|+|+| +|++.|++++. ..    +..+.     +.+++..||....    
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            3678999999999     4444 55699999999 59999988654 11    11111     1233333442211    


Q ss_pred             ---hhhcccHHHHHHHHHhccCCcEEEE
Q psy13086         78 ---KWRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        78 ---~~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                         ...-....+++++.|+|||||.+++
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence               0011236799999999999999864

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.14  E-value=2.9e-11  Score=93.46  Aligned_cols=87  Identities=11%  Similarity=0.147  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhcc-c-----cceEEEeC--------CCCcccccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWSL-Y-----LKKMFFLY--------PDPHFKRCK   76 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~~-~-----~d~v~~~f--------~d~~f~~~h   76 (169)
                      ++.+|||||||+|     +++.. +..+|+|+|+|+.|++.|++++.. .     .+.+.+..        ++..||..+
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~  156 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH  156 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence            3679999999999     55553 557999999999999999877541 0     12222211        122244322


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      ...  ....+++++.++|||||.+++.+.
T Consensus       157 ~~~--~~~~~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          157 VGA--AAPVVPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             ECS--BBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             ECC--chHHHHHHHHHhcCCCcEEEEEEe
Confidence            111  123467889999999999999763

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.14  E-value=9.5e-11  Score=91.72  Aligned_cols=84  Identities=13%  Similarity=0.152  Sum_probs=56.1

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeCC------------C--Cccccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLYP------------D--PHFKRC   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f~------------d--~~f~~~   75 (169)
                      ..+|||||||+|     ++...| +.+++|+|+|+.+++.|++++. ..+ +.+.+...            +  ..||..
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V  152 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI  152 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence            578999999999     667666 6799999999999999987653 001 11111000            0  122211


Q ss_pred             c---hhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         76 K---YKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        76 h---~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      -   ...  ....+++++.++|||||.+++.
T Consensus       153 ~~d~~~~--~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          153 FIDADKR--NYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             EECSCGG--GHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EECCCHH--HHHHHHHHHHHHcCCCeEEEEe
Confidence            0   000  1257899999999999999885

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.14  E-value=1.2e-10  Score=97.13  Aligned_cols=86  Identities=15%  Similarity=-0.011  Sum_probs=60.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEeCCCC---cccc------cchh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFLYPDP---HFKR------CKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~f~d~---~f~~------~h~~   78 (169)
                      ..+|||||||+|     +++.+|+.+++|+|+ +.|++.|++++.     ..+..+...+.++   .||.      .|+.
T Consensus       203 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~  281 (369)
T 3gwz_A          203 AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDW  281 (369)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGS
T ss_pred             CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccC
Confidence            689999999999     777899999999999 999999998764     1122222222222   2332      1211


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..-....++++++++|||||++++.+
T Consensus       282 ~d~~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          282 DDDDVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             CHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            11111369999999999999999974

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.14  E-value=3.3e-11  Score=95.53  Aligned_cols=86  Identities=16%  Similarity=0.171  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHH------HHHHHHHHhc-ccc-ceEE-----------EeCCCCc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVK------VSDYVIDEWS-LYL-KKMF-----------FLYPDPH   71 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~------~l~~a~~~~~-~~~-d~v~-----------~~f~d~~   71 (169)
                      ++.+|||||||+|     ++... |+.+++|+|+|+.      |++.|++++. ..+ +.+.           +.+++..
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  122 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQH  122 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCC
Confidence            4679999999999     55664 6689999999997      9999988764 111 1122           1223344


Q ss_pred             cccc------chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         72 FKRC------KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        72 f~~~------h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ||..      |+...  ...+++.+.++++|||.+++.+
T Consensus       123 fD~v~~~~~l~~~~~--~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          123 FDRVVLAHSLWYFAS--ANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             CSEEEEESCGGGSSC--HHHHHHHHHHHTTTCSEEEEEE
T ss_pred             EEEEEEccchhhCCC--HHHHHHHHHHHhCCCCEEEEEE
Confidence            5532      22111  2456777777777799999975

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.13  E-value=1.2e-10  Score=90.08  Aligned_cols=86  Identities=13%  Similarity=0.117  Sum_probs=55.8

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeCCC--------------Cccccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLYPD--------------PHFKRC   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f~d--------------~~f~~~   75 (169)
                      ..+|||||||+|     ++...| +.+++|+|+|+.+++.|++++. ..+ +.+.+...|              ..||..
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v  149 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  149 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence            578999999999     666666 6899999999999999987653 001 111110000              111110


Q ss_pred             chh-hhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         76 KYK-WRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        76 h~~-~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ... .......+++++.++|+|||.+++.
T Consensus       150 ~~d~~~~~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          150 VVDADKENCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            000 0001257899999999999999885

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.13  E-value=1.1e-10  Score=96.65  Aligned_cols=130  Identities=12%  Similarity=0.020  Sum_probs=78.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEeCCC---Ccccc------cchh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFLYPD---PHFKR------CKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~f~d---~~f~~------~h~~   78 (169)
                      ..+|||||||+|     +++.+|+.+++|+|+ +.|++.|++++.     ..+..+...+.+   +..|.      .|+.
T Consensus       191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~  269 (359)
T 1x19_A          191 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSA  269 (359)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGS
T ss_pred             CCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccC
Confidence            679999999999     777789999999999 999999998754     112222221211   11121      1211


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeCC------hHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHH
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITDV------KDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVT  152 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~------~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~  152 (169)
                      ..-....++++++++|||||++++.+..      +.+...+ ..+...+            ........+...+++....
T Consensus       270 ~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~-~~~~~~~------------~g~~~~~~~t~~e~~~ll~  336 (359)
T 1x19_A          270 NEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLS-HYILGAG------------MPFSVLGFKEQARYKEILE  336 (359)
T ss_dssp             CHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHH-HHGGGGG------------SSCCCCCCCCGGGHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHH-HHHHhcC------------CCCcccCCCCHHHHHHHHH
Confidence            1101357899999999999999887511      1111111 1111100            0000013367788899999


Q ss_pred             HcCCCeEEE
Q psy13086        153 RNKGEKFCA  161 (169)
Q Consensus       153 ~~g~~i~~~  161 (169)
                      +.|..+..+
T Consensus       337 ~aGf~~v~~  345 (359)
T 1x19_A          337 SLGYKDVTM  345 (359)
T ss_dssp             HHTCEEEEE
T ss_pred             HCCCceEEE
Confidence            999887554

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.12  E-value=5e-11  Score=93.13  Aligned_cols=89  Identities=11%  Similarity=0.134  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe-------CCCCc-ccccchhhhcc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL-------YPDPH-FKRCKYKWRII   82 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~-------f~d~~-f~~~h~~~~~~   82 (169)
                      ++.+|||||||+|     +++..+ .+++|+|+|+.+++.|++++. ..++.+.+.       +++.. ||......  .
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~--~  167 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTA--G  167 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS--B
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCccEEEECC--c
Confidence            3678999999999     555556 799999999999999998764 112222211       11111 22211000  0


Q ss_pred             cHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTITDVKD  108 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~d~~~  108 (169)
                      ...+.+++.++|||||.+++.+....
T Consensus       168 ~~~~~~~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          168 APKIPEPLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             BSSCCHHHHHTEEEEEEEEEEECSSS
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEecCC
Confidence            12244578999999999999876543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.12  E-value=9.7e-11  Score=89.87  Aligned_cols=79  Identities=19%  Similarity=0.246  Sum_probs=53.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~   70 (169)
                      +.+|||+|||+|     ++.+ ...+|+|+|+|+.|++.|++++.                      .++|.|.+   +|
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~-~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~---~~  130 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV---DP  130 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE---CC
T ss_pred             CCeEEEeCCCcCHHHHHHHhc-CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEE---CC
Confidence            578999999999     2333 22489999999999999998753                      12333332   22


Q ss_pred             cccccchhhhcccHHHHHHHHH--hccCCcEEEEEeCC
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAY--VLSEGGIVYTITDV  106 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~r--vLkpGG~l~i~~d~  106 (169)
                      .|..    .  ....+++++.+  +|||||.+++.+..
T Consensus       131 p~~~----~--~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          131 PFRR----G--LLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             SSST----T--THHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             CCCC----C--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            1110    0  12467888865  59999999998643

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.12  E-value=1.4e-10  Score=91.88  Aligned_cols=76  Identities=11%  Similarity=0.122  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHH----HHHH--hc----------------cccceEEEeCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDY----VIDE--WS----------------LYLKKMFFLYP   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~----a~~~--~~----------------~~~d~v~~~f~   68 (169)
                      ++.+|||+|||+|     +|.. -|+..|+|+|+|+.|++.    |+++  +.                .++|.|++..+
T Consensus        76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a  155 (232)
T 3id6_C           76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIA  155 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCC
T ss_pred             CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCC
Confidence            4789999999999     5554 367799999999988643    3332  11                23454444333


Q ss_pred             CCcccccchhhhcccHH-HHHHHHHhccCCcEEEEE
Q psy13086         69 DPHFKRCKYKWRIINQN-LLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        69 d~~f~~~h~~~~~~~~~-~l~~~~rvLkpGG~l~i~  103 (169)
                      .|.           ... +++.+.++|||||+|+++
T Consensus       156 ~~~-----------~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          156 QPD-----------QTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             CTT-----------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             Chh-----------HHHHHHHHHHHhCCCCeEEEEE
Confidence            221           123 455666699999999986

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.11  E-value=1.1e-10  Score=91.81  Aligned_cols=85  Identities=13%  Similarity=0.056  Sum_probs=57.1

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-cccc-eEEEeCC---------------CCcccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYLK-KMFFLYP---------------DPHFKR   74 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~~f~---------------d~~f~~   74 (169)
                      ..+|||||||+|     ++...| +.+++++|+|+.+++.|++++. ..++ .+.+...               +..||.
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  150 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF  150 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence            578999999999     666666 7899999999999999988754 1111 1111100               112221


Q ss_pred             c---chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         75 C---KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        75 ~---h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .   +.+.  ....+++++.++|||||.+++.+
T Consensus       151 I~~d~~~~--~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          151 GFVDADKP--NYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEECSCGG--GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCchH--HHHHHHHHHHHhcCCCeEEEEec
Confidence            1   0011  13679999999999999998753

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.11  E-value=7.8e-11  Score=91.22  Aligned_cols=87  Identities=21%  Similarity=0.201  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEeC-----CCCcccccchhhhcccH
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFLY-----PDPHFKRCKYKWRIINQ   84 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~f-----~d~~f~~~h~~~~~~~~   84 (169)
                      ++.+|||||||+|     ++...  .+++|+|+|+.|++.|++++.  +.+..+....     ++..||......  ...
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~--~~~  145 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWA--TAP  145 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESS--BBS
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECC--cHH
Confidence            3679999999999     44443  699999999999999998764  1121111111     112233211000  011


Q ss_pred             HHHHHHHHhccCCcEEEEEeCCh
Q psy13086         85 NLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                      .+.+++.++|||||.+++.+...
T Consensus       146 ~~~~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          146 TLLCKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             SCCHHHHHTEEEEEEEEEEECSS
T ss_pred             HHHHHHHHHcCCCcEEEEEEcCC
Confidence            23457899999999999987543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.11  E-value=1.1e-10  Score=91.39  Aligned_cols=87  Identities=14%  Similarity=0.198  Sum_probs=57.4

Q ss_pred             CCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-cccc-eEEEe-----------------------
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYLK-KMFFL-----------------------   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~~-----------------------   66 (169)
                      ..+|||||||+|     ++...| ..+++|+|+|+.+++.|++++. ..++ .+.+.                       
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  140 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD  140 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence            578999999999     666666 6899999999999999988753 1111 11110                       


Q ss_pred             CCC--Ccccccchhh-hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         67 YPD--PHFKRCKYKW-RIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        67 f~d--~~f~~~h~~~-~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |++  ..||...... .-....+++++.++|||||.+++.+
T Consensus       141 f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          141 FAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            010  2233211000 0012578999999999999999864

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.11  E-value=1.5e-10  Score=99.32  Aligned_cols=87  Identities=18%  Similarity=0.138  Sum_probs=57.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHH-------HHHhc-cc--cceEEEeCC----C--------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYV-------IDEWS-LY--LKKMFFLYP----D--------   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a-------~~~~~-~~--~d~v~~~f~----d--------   69 (169)
                      ++.+|||||||+|     +|...+...|+|||+|+.|++.|       ++++. ..  ++.+.+...    +        
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~  321 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELI  321 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHG
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccccc
Confidence            4679999999999     56666667899999999998888       66554 12  233433211    1        


Q ss_pred             Ccccccchhhhc---ccHHHHHHHHHhccCCcEEEEE
Q psy13086         70 PHFKRCKYKWRI---INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        70 ~~f~~~h~~~~~---~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ..||..-....+   ....+|+++.++|||||++++.
T Consensus       322 ~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          322 PQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             GGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             CCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEe
Confidence            122221100000   1256789999999999999885

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.11  E-value=2.4e-10  Score=97.41  Aligned_cols=111  Identities=14%  Similarity=0.140  Sum_probs=72.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d   69 (169)
                      ++.+|||+|||+|     ++...++..++|+|+|+.+++.+++++.                      +++|.|.+..|-
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc  325 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC  325 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCC
Confidence            3679999999999     6666777899999999999999987753                      134555442221


Q ss_pred             Ccccccch------hh---hc-----ccHHHHHHHHHhccCCcEEEEEeC--Ch-HHHHHHHHHHhcCCCceecC
Q psy13086         70 PHFKRCKY------KW---RI-----INQNLLSEYAYVLSEGGIVYTITD--VK-DLHDWIVSHFTEHPLFVECD  127 (169)
Q Consensus        70 ~~f~~~h~------~~---~~-----~~~~~l~~~~rvLkpGG~l~i~~d--~~-~~~~~~~~~~~~~~~f~~~~  127 (169)
                      ......+.      .+   .+     .+..+++++.++|||||.++++|-  .+ +-.......+..|+.|...+
T Consensus       326 sg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~~~~  400 (429)
T 1sqg_A          326 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCE  400 (429)
T ss_dssp             CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECS
T ss_pred             CcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCEEeC
Confidence            10000000      00   00     125789999999999999999862  22 22233445566788887764

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.10  E-value=1.1e-10  Score=95.51  Aligned_cols=88  Identities=15%  Similarity=0.153  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-cccceEEE---eCC-----CCcccccchhhhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYLKKMFF---LYP-----DPHFKRCKYKWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~---~f~-----d~~f~~~h~~~~~   81 (169)
                      ++.+|||||||+|     +++..+ +.+|+|+|+|+.|++.|++++. ..++.+.+   .+.     +..||......  
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~--  152 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV--  152 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS--
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcC--
Confidence            3679999999999     555555 4679999999999999998764 11221221   111     12233211000  


Q ss_pred             ccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ....+.+++.++|||||++++....
T Consensus       153 ~~~~~~~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          153 GVDEVPETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             BBSCCCHHHHHHEEEEEEEEEEBCB
T ss_pred             CHHHHHHHHHHhcCCCcEEEEEECC
Confidence            0011236788999999999998643

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.10  E-value=1.2e-10  Score=95.27  Aligned_cols=85  Identities=20%  Similarity=0.025  Sum_probs=58.3

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEeCCCC---cccc------cchhh
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFLYPDP---HFKR------CKYKW   79 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~f~d~---~f~~------~h~~~   79 (169)
                      .+|||||||+|     +++.+|+.+++|+|+ +.|++.|++++.     ..+..+...+.++   .||.      .|+..
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~  247 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLD  247 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCC
Confidence            78999999999     677789999999999 999999988754     1122222112111   2332      12111


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .-....++++++++|||||++++..
T Consensus       248 ~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          248 EAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            1112479999999999999999985

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.10  E-value=1e-10  Score=96.32  Aligned_cols=86  Identities=12%  Similarity=0.002  Sum_probs=59.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEeCC------CCcccc------c
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFLYP------DPHFKR------C   75 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~f~------d~~f~~------~   75 (169)
                      ..+|||||||+|     +++.+|+.+++|+|+ +.|++.|++++.     ..+..+...+.      +..||.      .
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence            579999999999     777889999999999 889999987654     11222221111      112332      1


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |+...-....++++++++|||||++++..
T Consensus       259 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          259 HYFDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             GGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            21111012579999999999999999875

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.10  E-value=3.6e-10  Score=97.65  Aligned_cols=112  Identities=16%  Similarity=0.245  Sum_probs=70.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d   69 (169)
                      ++.+|||+|||+|     +|...++ ..|+|+|+|+.+++.+++|+.                     +++|.|.+.-|-
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~Pc  180 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPC  180 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCC
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCc
Confidence            3689999999999     6666554 699999999999999987753                     346666543221


Q ss_pred             Cc-------ccccc-h----hhhc--ccHHHHHHHHHhccCCcEEEEEeC--ChHHH-HHHHHHHhcCCCceecCc
Q psy13086         70 PH-------FKRCK-Y----KWRI--INQNLLSEYAYVLSEGGIVYTITD--VKDLH-DWIVSHFTEHPLFVECDL  128 (169)
Q Consensus        70 ~~-------f~~~h-~----~~~~--~~~~~l~~~~rvLkpGG~l~i~~d--~~~~~-~~~~~~~~~~~~f~~~~~  128 (169)
                      ..       ++... +    ...+  .+..+++++.++|||||+|+.+|-  .+... .-....+..+|.|+..+.
T Consensus       181 Sg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l~~~  256 (464)
T 3m6w_A          181 SGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDA  256 (464)
T ss_dssp             CCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEEECC
T ss_pred             CCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcEEEec
Confidence            00       00000 0    0000  136799999999999999998752  22211 122233456777776543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.09  E-value=4.7e-11  Score=94.14  Aligned_cols=98  Identities=8%  Similarity=0.032  Sum_probs=63.0

Q ss_pred             CCeEEEEcCccc-----ccCc----CCCCcEEEEeCCHHHHHHHHHH---hc---c--------------ccceEEEeCC
Q psy13086         18 KVEFVDVGCGKL-----YLPM----FPSTLILGLEIRVKVSDYVIDE---WS---L--------------YLKKMFFLYP   68 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~----~p~~~v~GiDis~~~l~~a~~~---~~---~--------------~~d~v~~~f~   68 (169)
                      ..+|||||||+|     +++.    .|+.+|+|||+|+.|++.|+..   +.   +              ++|.|++.. 
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~-  160 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN-  160 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES-
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC-
Confidence            568999999999     5555    6789999999999999887621   11   0              123222211 


Q ss_pred             CCcccccchhhhcccHHHHHHHHH-hccCCcEEEEEeCC---hHH-HHHHHHHHhcCC-Cceec
Q psy13086         69 DPHFKRCKYKWRIINQNLLSEYAY-VLSEGGIVYTITDV---KDL-HDWIVSHFTEHP-LFVEC  126 (169)
Q Consensus        69 d~~f~~~h~~~~~~~~~~l~~~~r-vLkpGG~l~i~~d~---~~~-~~~~~~~~~~~~-~f~~~  126 (169)
                            .|.    ....+++++.| +|||||.|++.+-.   ..+ ...+.+.+..++ .|...
T Consensus       161 ------~~~----~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~  214 (236)
T 2bm8_A          161 ------AHA----NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD  214 (236)
T ss_dssp             ------SCS----SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred             ------chH----hHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence                  111    13679999997 99999999985321   111 123445555666 66653

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.09  E-value=1.5e-10  Score=95.61  Aligned_cols=88  Identities=17%  Similarity=0.033  Sum_probs=60.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c----ccceEEEeCCCC---cccc------cchh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L----YLKKMFFLYPDP---HFKR------CKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~----~~d~v~~~f~d~---~f~~------~h~~   78 (169)
                      ..+|||||||+|     ++..+|+.+++++|+ +.|++.|++++. .    .+..+...+.++   .||.      .|+.
T Consensus       184 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~  262 (360)
T 1tw3_A          184 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNW  262 (360)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGS
T ss_pred             CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCC
Confidence            679999999999     677789999999999 999999998764 1    222222222111   1332      1111


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ..-....++++++++|||||.+++.+..
T Consensus       263 ~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          263 PDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            1101147999999999999999987644

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.09  E-value=1.7e-10  Score=93.56  Aligned_cols=87  Identities=11%  Similarity=0.067  Sum_probs=59.5

Q ss_pred             CCeEEEEcCccc-------cc-CcCCCCcEEEEeCCHHHHHHHHHHhcc----ccceEEEeCCCC-----------ccc-
Q psy13086         18 KVEFVDVGCGKL-------YL-PMFPSTLILGLEIRVKVSDYVIDEWSL----YLKKMFFLYPDP-----------HFK-   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-------la-~~~p~~~v~GiDis~~~l~~a~~~~~~----~~d~v~~~f~d~-----------~f~-   73 (169)
                      -..|||||||+|       ++ ...|+++|+|||.|+.|++.|++++..    .+..+...+.++           .|+ 
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~  158 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL  158 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence            368999999973       33 357999999999999999999988752    122222112211           111 


Q ss_pred             ----------ccchhhhcc-cHHHHHHHHHhccCCcEEEEEe
Q psy13086         74 ----------RCKYKWRII-NQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        74 ----------~~h~~~~~~-~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                                ..||...-. ...++++++++|+|||.|++++
T Consensus       159 ~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~  200 (277)
T 3giw_A          159 TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI  200 (277)
T ss_dssp             TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence                      134443321 1479999999999999999984

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.08  E-value=1.7e-10  Score=87.31  Aligned_cols=30  Identities=20%  Similarity=0.380  Sum_probs=25.8

Q ss_pred             CCeEEEEcCccc-----ccCcCC--CCcEEEEeCCHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP--STLILGLEIRVK   47 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p--~~~v~GiDis~~   47 (169)
                      +.+|||||||+|     ++.++|  ..+++|+|+|+.
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~   59 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM   59 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc
Confidence            578999999999     666777  689999999983

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.07  E-value=9.8e-11  Score=92.23  Aligned_cols=40  Identities=10%  Similarity=0.116  Sum_probs=33.6

Q ss_pred             CCeEEEEcCccc-----ccCc--CCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPM--FPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~--~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ..+|||+|||+|     ++..  .+..+|+|+|+|+.|++.|++++.
T Consensus        52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~   98 (250)
T 1o9g_A           52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLA   98 (250)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHH
Confidence            568999999999     5555  567899999999999999986543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.07  E-value=1.1e-11  Score=96.72  Aligned_cols=76  Identities=14%  Similarity=0.069  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~   70 (169)
                      ++.+|||||||+|     ++..  ..+|+|+|+|+.|++.|++++.                     .++|.|.+..+-.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence            3689999999999     4444  4799999999999999987653                     3455554432221


Q ss_pred             cccccchhhhcccHHHHHHHHHhccCCcEEEE
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                      ++..        ....+.+++++|+|||.+++
T Consensus       156 ~~~~--------~~~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          156 GPDY--------ATAETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             SGGG--------GGSSSBCTTTSCSSCHHHHH
T ss_pred             Ccch--------hhhHHHHHHhhcCCcceeHH
Confidence            1111        11255678899999998655

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.06  E-value=5.6e-10  Score=95.77  Aligned_cols=111  Identities=15%  Similarity=0.144  Sum_probs=69.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLY   67 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f   67 (169)
                      ++.+|||+|||+|     ++...++ ..++|+|+|+.+++.+++++.                       +++|.|.+.-
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~  338 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDA  338 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEEC
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcC
Confidence            3679999999999     6666665 799999999999999988754                       1133333211


Q ss_pred             CCCcccccc------hhh------hc--ccHHHHHHHHHhccCCcEEEEEeC--ChHH-HHHHHHHHhcCCCceecC
Q psy13086         68 PDPHFKRCK------YKW------RI--INQNLLSEYAYVLSEGGIVYTITD--VKDL-HDWIVSHFTEHPLFVECD  127 (169)
Q Consensus        68 ~d~~f~~~h------~~~------~~--~~~~~l~~~~rvLkpGG~l~i~~d--~~~~-~~~~~~~~~~~~~f~~~~  127 (169)
                      |-......+      +.+      .+  .+..+++++.++|||||.++++|-  .+.. .......+..|+.|+..+
T Consensus       339 Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~~  415 (450)
T 2yxl_A          339 PCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVP  415 (450)
T ss_dssp             CCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEECC
T ss_pred             CCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEee
Confidence            100000000      000      00  125789999999999999998763  2211 222344456788887754

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.05  E-value=1.7e-10  Score=92.72  Aligned_cols=73  Identities=18%  Similarity=0.147  Sum_probs=55.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~   70 (169)
                      ..+|||||||+|     +++. + .+++++|+++.|++.|+++++                      +++|.|.+..++|
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~~dp  150 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQEPD  150 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESSCCC
T ss_pred             CCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECCCCh
Confidence            478999999999     4455 6 899999999999999986542                      1244444433332


Q ss_pred             cccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                                   ..++++++++|||||.+++.+.
T Consensus       151 -------------~~~~~~~~~~L~pgG~lv~~~~  172 (262)
T 2cmg_A          151 -------------IHRIDGLKRMLKEDGVFISVAK  172 (262)
T ss_dssp             -------------HHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -------------HHHHHHHHHhcCCCcEEEEEcC
Confidence                         3489999999999999998753

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.05  E-value=8.2e-11  Score=95.27  Aligned_cols=39  Identities=5%  Similarity=-0.035  Sum_probs=31.7

Q ss_pred             CCeEEEEcCccc-----c----cCcCC----CCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL-----Y----LPMFP----STLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G-----l----a~~~p----~~~v~GiDis~~~l~~a~~~~   56 (169)
                      ..+|||+|||||     +    +...+    +.+|+|+|+|+.|++.|++++
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            468999999999     2    33323    468999999999999999864

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.05  E-value=1.9e-10  Score=96.54  Aligned_cols=80  Identities=15%  Similarity=0.132  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~   70 (169)
                      ++.+|||||||+|     +++. ...+|+|||+| .|++.|++++.                     +++|.|..... .
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~-~  139 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWM-G  139 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCC-B
T ss_pred             CCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcCh-h
Confidence            3689999999999     3333 33499999999 99999987654                     22333322100 0


Q ss_pred             cccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ++-  .  ..-....+++++.++|||||.+++.
T Consensus       140 ~~l--~--~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          140 YFL--L--RESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             TTB--T--TTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             hcc--c--chHHHHHHHHHHHhhCCCCeEEEEe
Confidence            000  0  0001357899999999999999764

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.04  E-value=1.6e-11  Score=96.71  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=34.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.+|||||||+|     ++...|+.+++|+|+|+.|++.|++++.
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~  110 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE  110 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH
Confidence            578999999999     5566677899999999999999998754

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.04  E-value=3e-10  Score=94.10  Aligned_cols=83  Identities=20%  Similarity=0.262  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEE--------EeCCCCcccccchh---
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMF--------FLYPDPHFKRCKYK---   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~--------~~f~d~~f~~~h~~---   78 (169)
                      ++.+|||||||+|     +++. +..+|+|+|+|+ |++.|++++. ..+ +.+.        +.+++..||..-..   
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  141 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  141 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             CCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence            3678999999999     3333 446999999996 9999988754 111 1111        11222233321100   


Q ss_pred             ----hhcccHHHHHHHHHhccCCcEEE
Q psy13086         79 ----WRIINQNLLSEYAYVLSEGGIVY  101 (169)
Q Consensus        79 ----~~~~~~~~l~~~~rvLkpGG~l~  101 (169)
                          ..-....+++++.++|||||.++
T Consensus       142 ~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          142 YFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence                00012578999999999999997

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.03  E-value=8.1e-10  Score=84.40  Aligned_cols=105  Identities=11%  Similarity=0.072  Sum_probs=59.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHH-----------------HHHHHHhc----cccceEEEeCCCCc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVS-----------------DYVIDEWS----LYLKKMFFLYPDPH   71 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l-----------------~~a~~~~~----~~~d~v~~~f~d~~   71 (169)
                      +.+|||+|||+|     ++++  ...|+|||+++...                 +...+.+.    +.+|.|...-+...
T Consensus        26 g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~  103 (191)
T 3dou_A           26 GDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKV  103 (191)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCC
T ss_pred             CCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCC
Confidence            689999999999     5555  67999999997310                 00011111    25666654322111


Q ss_pred             cc---ccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086         72 FK---RCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        72 f~---~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      ..   ..+....-....+++++.++|||||.|++......-...+...+..+  |..+
T Consensus       104 ~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~--F~~v  159 (191)
T 3dou_A          104 SGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN--FSSY  159 (191)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG--EEEE
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh--cCEE
Confidence            10   00111001135789999999999999998764333333355555443  5543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.03  E-value=2.7e-10  Score=88.02  Aligned_cols=87  Identities=14%  Similarity=0.184  Sum_probs=57.2

Q ss_pred             CCCeEEEEcCccc-----ccCcC-----CCCcEEEEeCCHHHHHHHHHHhc-cc-----cceEEEeCCC-----------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-----PSTLILGLEIRVKVSDYVIDEWS-LY-----LKKMFFLYPD-----------   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-----p~~~v~GiDis~~~l~~a~~~~~-~~-----~d~v~~~f~d-----------   69 (169)
                      ++.+|||||||+|     ++...     |..+|+|+|+|+.+++.|++++. ..     .+.+.+...|           
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  159 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE  159 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence            3679999999999     45443     56799999999999999998764 11     2223221111           


Q ss_pred             -CcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         70 -PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        70 -~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                       ..||......  ....+++++.++|||||++++...
T Consensus       160 ~~~fD~I~~~~--~~~~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          160 LGLFDAIHVGA--SASELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HCCEEEEEECS--BBSSCCHHHHHHEEEEEEEEEEEE
T ss_pred             CCCcCEEEECC--chHHHHHHHHHhcCCCcEEEEEEc
Confidence             1233221110  113457889999999999998753

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.02  E-value=1.4e-10  Score=84.82  Aligned_cols=101  Identities=11%  Similarity=-0.007  Sum_probs=61.3

Q ss_pred             CCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHH----------HH--------hc-cccceEEEeCCCCcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVI----------DE--------WS-LYLKKMFFLYPDPHF   72 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~----------~~--------~~-~~~d~v~~~f~d~~f   72 (169)
                      +.+|||||||+|     +++.+ |+.+++|+|+|+ |++..+          ..        ++ +++|.|....+-.++
T Consensus        23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~  101 (180)
T 1ej0_A           23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMS  101 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred             CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCCcccc
Confidence            679999999999     55553 668999999998 654311          00        11 456766654332222


Q ss_pred             cccc---hhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc
Q psy13086         73 KRCK---YKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE  119 (169)
Q Consensus        73 ~~~h---~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~  119 (169)
                      ....   ....-....+++++.++|||||.+++.+............+..
T Consensus       102 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~  151 (180)
T 1ej0_A          102 GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH
Confidence            1110   0000011579999999999999999976544333334444443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.01  E-value=4.1e-09  Score=80.11  Aligned_cols=99  Identities=15%  Similarity=0.181  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------cccceEEEeCCCCcccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------LYLKKMFFLYPDPHFKR   74 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------~~~d~v~~~f~d~~f~~   74 (169)
                      ++.+|||+|||+|     ++.. ...+++|+|+|+.|++.|++++.                 .++|.|.+..|   +. 
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p---~~-  123 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPP---FG-  123 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCC---CS-
T ss_pred             CcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCC---Cc-
Confidence            3678999999999     4433 33489999999999999998753                 23454443322   11 


Q ss_pred             cchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         75 CKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        75 ~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                        ..++-....+++++.++|  ||.+.+....+...+.....+.+++ |..
T Consensus       124 --~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g-~~~  169 (207)
T 1wy7_A          124 --SQRKHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHG-FVV  169 (207)
T ss_dssp             --SSSTTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTT-EEE
T ss_pred             --cccCCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCC-CeE
Confidence              111112357899999999  6655554445555666666666554 443

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.01  E-value=2.3e-10  Score=95.60  Aligned_cols=131  Identities=15%  Similarity=0.038  Sum_probs=75.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcc--cc------cchhhhcccH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHF--KR------CKYKWRIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f--~~------~h~~~~~~~~   84 (169)
                      ..+|||||||+|     +++.+|+.+++++|+ +.|++.|+++-  .+..+...+.+|.+  |.      .|+...-...
T Consensus       204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~  280 (368)
T 3reo_A          204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFS--GVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCL  280 (368)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCT--TEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHH
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcC--CCEEEecCCCCCCCCCCEEEEechhhcCCHHHHH
Confidence            689999999999     778899999999999 88998776421  11111111111111  21      1211110124


Q ss_pred             HHHHHHHHhccCCcEEEEEeCCh------HHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCe
Q psy13086         85 NLLSEYAYVLSEGGIVYTITDVK------DLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEK  158 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~d~~------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i  158 (169)
                      .+|++++++|||||++++.....      ....+....+... .+....      +    ...++..+++....+.|..+
T Consensus       281 ~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~------~----g~~rt~~e~~~ll~~AGF~~  349 (368)
T 3reo_A          281 KLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDAL-MLAYNP------G----GKERTEKEFQALAMASGFRG  349 (368)
T ss_dssp             HHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHH-HHHHSS------B----CCCCCHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHH-HHhhcC------C----CccCCHHHHHHHHHHCCCee
Confidence            68999999999999999975321      1111110000000 000000      0    12355678899999999998


Q ss_pred             EEEE
Q psy13086        159 FCAV  162 (169)
Q Consensus       159 ~~~~  162 (169)
                      .++.
T Consensus       350 v~~~  353 (368)
T 3reo_A          350 FKVA  353 (368)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.01  E-value=7.9e-10  Score=87.17  Aligned_cols=102  Identities=12%  Similarity=0.007  Sum_probs=67.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc-eEEEeCCCC--------cccccch--hhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK-KMFFLYPDP--------HFKRCKY--KWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d-~v~~~f~d~--------~f~~~h~--~~~   80 (169)
                      +.+|||||||+|     ++...|..+|+|+|+++.+++.|++|+. ..++ .+.+...|-        .||..-.  .-.
T Consensus        16 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~Gg   95 (225)
T 3kr9_A           16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGMGG   95 (225)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH
T ss_pred             CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCCCh
Confidence            578999999999     6677788899999999999999999876 2332 233322221        2332100  000


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      -+...++.+....|+|+|.|+++....  ....++.+.+++
T Consensus        96 ~~i~~Il~~~~~~L~~~~~lVlq~~~~--~~~vr~~L~~~G  134 (225)
T 3kr9_A           96 RLIARILEEGLGKLANVERLILQPNNR--EDDLRIWLQDHG  134 (225)
T ss_dssp             HHHHHHHHHTGGGCTTCCEEEEEESSC--HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCCC--HHHHHHHHHHCC
Confidence            013578999999999999999976432  222444444453

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.00  E-value=1.9e-10  Score=89.22  Aligned_cols=87  Identities=16%  Similarity=0.261  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCC------CCcEEEEeCCHHHHHHHHHHhcc-c-----cceEEEe-------CCC-Cc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP------STLILGLEIRVKVSDYVIDEWSL-Y-----LKKMFFL-------YPD-PH   71 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p------~~~v~GiDis~~~l~~a~~~~~~-~-----~d~v~~~-------f~d-~~   71 (169)
                      ++.+|||||||+|     ++...+      ..+|+|+|+++.+++.|++++.. .     .+.+.+.       +++ ..
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  163 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAP  163 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCS
T ss_pred             CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcCCC
Confidence            3679999999999     444433      36999999999999999887541 1     2222221       111 22


Q ss_pred             ccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         72 FKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        72 f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      ||......  ....+++++.++|||||++++...
T Consensus       164 fD~I~~~~--~~~~~~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          164 YNAIHVGA--AAPDTPTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             EEEEEECS--CBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             ccEEEECC--chHHHHHHHHHHhcCCCEEEEEEe
Confidence            33221110  112355889999999999999764

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.00  E-value=5.5e-10  Score=91.98  Aligned_cols=83  Identities=16%  Similarity=0.277  Sum_probs=52.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc----cceEE-----EeCCCCcccccchh----
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY----LKKMF-----FLYPDPHFKRCKYK----   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~----~d~v~-----~~f~d~~f~~~h~~----   78 (169)
                      +.+|||||||+|     +++. +..+|+|+|+| .|++.|++++. ..    +..+.     +.+++..||.....    
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~  116 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence            578999999999     3333 45699999999 69999987754 11    11111     11222233321100    


Q ss_pred             ---hhcccHHHHHHHHHhccCCcEEEE
Q psy13086         79 ---WRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        79 ---~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                         ..-....++.++.++|||||.++.
T Consensus       117 ~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          117 FLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence               001135789999999999999973

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.98  E-value=4.6e-09  Score=87.26  Aligned_cols=126  Identities=15%  Similarity=0.095  Sum_probs=78.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEE---e-CCCCc--ccc------cchhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFF---L-YPDPH--FKR------CKYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~---~-f~d~~--f~~------~h~~~   79 (169)
                      ..+|||||||+|     +++++|+.+++..|. +.+++.|++++. ...+.|.+   . |.+|.  .|.      .|.-.
T Consensus       180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~  258 (353)
T 4a6d_A          180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWA  258 (353)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGSC
T ss_pred             CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccCC
Confidence            578999999999     888999999999997 889999998765 22233332   1 22222  221      12111


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEeCC-------hHHHHHH-HHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHH
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTITDV-------KDLHDWI-VSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKV  151 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~-------~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~  151 (169)
                      .-....+|++++++|+|||+++|....       +.....+ ...+...+                 -..++..+|+...
T Consensus       259 d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~-----------------g~ert~~e~~~ll  321 (353)
T 4a6d_A          259 DGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTE-----------------GQERTPTHYHMLL  321 (353)
T ss_dssp             HHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSS-----------------CCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCC-----------------CcCCCHHHHHHHH
Confidence            101246899999999999999997532       1111111 11111111                 1235677889999


Q ss_pred             HHcCCCeEEE
Q psy13086        152 TRNKGEKFCA  161 (169)
Q Consensus       152 ~~~g~~i~~~  161 (169)
                      .+.|....++
T Consensus       322 ~~AGf~~v~v  331 (353)
T 4a6d_A          322 SSAGFRDFQF  331 (353)
T ss_dssp             HHHTCEEEEE
T ss_pred             HHCCCceEEE
Confidence            9999887654

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.98  E-value=3.9e-10  Score=93.57  Aligned_cols=86  Identities=12%  Similarity=0.035  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cc----cceEEEeCCC----Cccccc------ch
Q psy13086         17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LY----LKKMFFLYPD----PHFKRC------KY   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~----~d~v~~~f~d----~~f~~~------h~   77 (169)
                      ++.+|||||||+|    .+...+..+|+|+|+|+ |++.|++++. ..    +..+...+.+    ..||..      ++
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~  128 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYM  128 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBTT
T ss_pred             CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchhc
Confidence            3679999999999    22233556999999996 8898887654 11    1111111111    112211      11


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ...-.....+.++.++|||||.+++.
T Consensus       129 ~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          129 LFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             BTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             CChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            00001246788899999999999864

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.98  E-value=1.3e-09  Score=93.99  Aligned_cols=110  Identities=14%  Similarity=0.096  Sum_probs=68.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYP   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~   68 (169)
                      ++.+|||+|||+|     +|...+ ...|+|+|+|+.+++.+++|+.                      +++|.|.+.-|
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaP  184 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAP  184 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCC
Confidence            4689999999999     665544 4699999999999999987654                      34566554322


Q ss_pred             CC---cc----ccc-----chhhh--cccHHHHHHHHHhccCCcEEEEEeC--ChHHH-HHHHHHHhcCCCceecC
Q psy13086         69 DP---HF----KRC-----KYKWR--IINQNLLSEYAYVLSEGGIVYTITD--VKDLH-DWIVSHFTEHPLFVECD  127 (169)
Q Consensus        69 d~---~f----~~~-----h~~~~--~~~~~~l~~~~rvLkpGG~l~i~~d--~~~~~-~~~~~~~~~~~~f~~~~  127 (169)
                      -.   .+    +..     .....  -.+.++++++.++|||||+|+.+|-  .+... .-....+..++ |+..+
T Consensus       185 CSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~-~~l~~  259 (456)
T 3m4x_A          185 CSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYP-VTIEE  259 (456)
T ss_dssp             CCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS-EEEEC
T ss_pred             CCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCC-CEEEe
Confidence            00   00    000     00000  0134789999999999999998752  22211 11223344566 66554

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.98  E-value=2.6e-09  Score=86.15  Aligned_cols=102  Identities=13%  Similarity=0.126  Sum_probs=63.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc--eEEEeCCC----Cccc------ccchhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK--KMFFLYPD----PHFK------RCKYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d--~v~~~f~d----~~f~------~~h~~~   79 (169)
                      ..+|||||||+|     ++...|.++++|+|+++.|++.+++++. ..+.  .....+..    ..+|      ..|+..
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~Le  212 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPCLE  212 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHHHH
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHHhh
Confidence            578999999999     3445688999999999999999998875 1111  11111211    1122      223222


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEeCC-----------hHHHHHHHHHHhcCC
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTITDV-----------KDLHDWIVSHFTEHP  121 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~-----------~~~~~~~~~~~~~~~  121 (169)
                      +--....+ ++...|+|+|.++-. |.           +.|..++.+.+.+.+
T Consensus       213 ~q~kg~g~-~ll~aL~~~~vvVSf-p~ksl~Grs~gm~~~Y~~~~e~~~~~~g  263 (281)
T 3lcv_B          213 TQQRGSGW-EVIDIVNSPNIVVTF-PTKSLGQRSKGMFQNYSQSFESQARERS  263 (281)
T ss_dssp             HHSTTHHH-HHHHHSSCSEEEEEE-ECC-------CHHHHHHHHHHHHHHHHT
T ss_pred             hhhhHHHH-HHHHHhCCCCEEEec-cchhhcCCCcchhhHHHHHHHHHHHhcC
Confidence            11123455 899999999998653 22           346666666665444

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.97  E-value=1.9e-09  Score=93.46  Aligned_cols=88  Identities=15%  Similarity=0.114  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYP   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~   68 (169)
                      ++.+|||+|||+|     +|...+ ...|+|+|+|+.+++.+++++.                      .++|.|.+.-|
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            3689999999999     666654 5799999999999999987753                      23555544211


Q ss_pred             CC---cc----ccc-chhh----hc--ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         69 DP---HF----KRC-KYKW----RI--INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        69 d~---~f----~~~-h~~~----~~--~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      -.   .+    +.. ++..    .+  .+..+|+++.++|||||+|+++|
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            00   00    000 0000    00  13578999999999999999976

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.97  E-value=1.5e-09  Score=89.84  Aligned_cols=81  Identities=10%  Similarity=-0.006  Sum_probs=55.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~   65 (169)
                      +.+|||+|||+|     ++..  +++|+|||+|+.|++.|++++.                           ..+|.|.+
T Consensus       154 ~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~  231 (332)
T 2igt_A          154 PLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  231 (332)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence            578999999999     3333  4599999999999999987643                           13454443


Q ss_pred             eCCCCccccc------chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         66 LYPDPHFKRC------KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        66 ~f~d~~f~~~------h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .-  |.|...      +...  ....+++++.++|||||.|++.+
T Consensus       232 dP--P~~~~~~~~~~~~~~~--~~~~ll~~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          232 DP--PKFGRGTHGEVWQLFD--HLPLMLDICREILSPKALGLVLT  272 (332)
T ss_dssp             CC--CSEEECTTCCEEEHHH--HHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             CC--ccccCCchHHHHHHHH--HHHHHHHHHHHhcCcCcEEEEEE
Confidence            21  212110      1111  12578999999999999977764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.96  E-value=1.2e-09  Score=82.13  Aligned_cols=87  Identities=13%  Similarity=0.058  Sum_probs=53.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCC---------CcEEEEeCCHHH-HHHH----H-------------HHhc-cccceEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPS---------TLILGLEIRVKV-SDYV----I-------------DEWS-LYLKKMF   64 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~---------~~v~GiDis~~~-l~~a----~-------------~~~~-~~~d~v~   64 (169)
                      +.+|||||||+|     +++..+.         .+++|+|+|+.+ +..+    .             +.++ .++|.|.
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~  102 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVIL  102 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEE
Confidence            679999999999     6666554         799999999843 1110    0             0011 3567666


Q ss_pred             EeCCCCcccccchhhh-----cccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         65 FLYPDPHFKRCKYKWR-----IINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        65 ~~f~d~~f~~~h~~~~-----~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ...+..+.  .++...     -....+++++.++|||||.|++.+..
T Consensus       103 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (196)
T 2nyu_A          103 SDMAPNAT--GFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA  147 (196)
T ss_dssp             ECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             eCCCCCCC--CCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            53321110  011000     01147899999999999999998643

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.95  E-value=2.4e-09  Score=84.70  Aligned_cols=102  Identities=12%  Similarity=0.040  Sum_probs=66.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeCCC--------Ccccccc--hhhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLYPD--------PHFKRCK--YKWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f~d--------~~f~~~h--~~~~   80 (169)
                      +.+|||||||+|     ++...|..+|+|+|+++.+++.|++|+. ..+ +.+.+...|        ..||..-  -.-.
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmGg  101 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMGG  101 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH
T ss_pred             CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCch
Confidence            678999999999     6666677899999999999999999876 222 223322111        1233210  0000


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      -....++.+..+.|+++|.|+++....  ....++.+.+++
T Consensus       102 ~lI~~IL~~~~~~l~~~~~lIlqp~~~--~~~lr~~L~~~G  140 (230)
T 3lec_A          102 RLIADILNNDIDKLQHVKTLVLQPNNR--EDDLRKWLAAND  140 (230)
T ss_dssp             HHHHHHHHHTGGGGTTCCEEEEEESSC--HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcCCEEEEECCCC--hHHHHHHHHHCC
Confidence            013568888999999999999986443  233444444443

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.95  E-value=7.8e-10  Score=84.62  Aligned_cols=97  Identities=13%  Similarity=0.127  Sum_probs=58.0

Q ss_pred             CCeEEEEcCccc-ccCcCCCCcEEEEeCCHHHHHHHHHH---hc---cccceEEEeCCCCcccccchhhhcccHHHHHHH
Q psy13086         18 KVEFVDVGCGKL-YLPMFPSTLILGLEIRVKVSDYVIDE---WS---LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEY   90 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~~~p~~~v~GiDis~~~l~~a~~~---~~---~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~   90 (169)
                      ..+|||||||+| ++... ..+++|+|+|+..+......   ++   +++|.|.+.+.-      |+.   ....+++++
T Consensus        68 ~~~vLDiG~G~G~~~~~l-~~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l------~~~---~~~~~l~~~  137 (215)
T 2zfu_A           68 SLVVADFGCGDCRLASSI-RNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSL------MGT---NIRDFLEEA  137 (215)
T ss_dssp             TSCEEEETCTTCHHHHHC-CSCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCC------CSS---CHHHHHHHH
T ss_pred             CCeEEEECCcCCHHHHHh-hccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhc------ccc---CHHHHHHHH
Confidence            578999999999 44333 26999999998711110000   00   345655543221      111   136899999


Q ss_pred             HHhccCCcEEEEEeCChHH--HHHHHHHHhcCCCcee
Q psy13086         91 AYVLSEGGIVYTITDVKDL--HDWIVSHFTEHPLFVE  125 (169)
Q Consensus        91 ~rvLkpGG~l~i~~d~~~~--~~~~~~~~~~~~~f~~  125 (169)
                      +++|||||.+++.+....+  ...+...+... +|+.
T Consensus       138 ~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~-Gf~~  173 (215)
T 2zfu_A          138 NRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKL-GFKI  173 (215)
T ss_dssp             HHHEEEEEEEEEEECGGGCSCHHHHHHHHHHT-TEEE
T ss_pred             HHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHC-CCEE
Confidence            9999999999997644321  23334444443 3544

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.95  E-value=5.4e-10  Score=93.24  Aligned_cols=127  Identities=12%  Similarity=-0.047  Sum_probs=75.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcc--cc------cchhhhcccH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHF--KR------CKYKWRIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f--~~------~h~~~~~~~~   84 (169)
                      ..+|||||||+|     +++.+|+.+++++|+ +.|++.|+++-  .+..+...+.+|.+  |.      .|+...-...
T Consensus       202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~  278 (364)
T 3p9c_A          202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFP--GVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCA  278 (364)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCT--TEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcC--CeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHH
Confidence            689999999999     778899999999999 88988776421  11111111111111  11      1211100124


Q ss_pred             HHHHHHHHhccCCcEEEEEeCCh------HHHHHH---HH--HHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHH
Q psy13086         85 NLLSEYAYVLSEGGIVYTITDVK------DLHDWI---VS--HFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTR  153 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~d~~------~~~~~~---~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~  153 (169)
                      .+|++++++|||||++++.....      ......   ..  .+...+            +    ...++..+|+....+
T Consensus       279 ~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~------------~----g~~rt~~e~~~ll~~  342 (364)
T 3p9c_A          279 TLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNP------------G----GRERYEREFQALARG  342 (364)
T ss_dssp             HHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCS------------S----CCCCBHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhccc------------C----CccCCHHHHHHHHHH
Confidence            78999999999999999975321      111100   11  110000            0    122456678999999


Q ss_pred             cCCCeEEEEE
Q psy13086        154 NKGEKFCAVF  163 (169)
Q Consensus       154 ~g~~i~~~~~  163 (169)
                      .|..+.++.-
T Consensus       343 AGF~~v~~~~  352 (364)
T 3p9c_A          343 AGFTGVKSTY  352 (364)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCceEEEEE
Confidence            9999876653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.95  E-value=1.9e-09  Score=85.98  Aligned_cols=98  Identities=10%  Similarity=0.047  Sum_probs=64.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEeCCC--------Ccccccchh--hh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFLYPD--------PHFKRCKYK--WR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~f~d--------~~f~~~h~~--~~   80 (169)
                      +.+|||||||+|     ++...|...|+|+|+++.+++.|++|+. ..+ +.+.+...|        ..||..-..  -.
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmGg  101 (244)
T 3gnl_A           22 NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGG  101 (244)
T ss_dssp             SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH
T ss_pred             CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCch
Confidence            578999999999     6666777899999999999999999876 222 223322111        113321000  00


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEeCC--hHHHHHHHH
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTITDV--KDLHDWIVS  115 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~d~--~~~~~~~~~  115 (169)
                      -+...++.+..+.|+++|.|+++...  +....|+.+
T Consensus       102 ~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~  138 (244)
T 3gnl_A          102 TLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQ  138 (244)
T ss_dssp             HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHH
Confidence            01356899999999999999998643  233444443

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.95  E-value=2.9e-09  Score=89.19  Aligned_cols=40  Identities=20%  Similarity=-0.060  Sum_probs=33.8

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.+|||+|||+|     ++...+..+++|+|+|+.|++.|++++.
T Consensus       218 ~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~  262 (373)
T 3tm4_A          218 GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNAL  262 (373)
T ss_dssp             SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH
Confidence            678999999999     5555555699999999999999998753

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.93  E-value=8.5e-10  Score=91.15  Aligned_cols=126  Identities=17%  Similarity=-0.000  Sum_probs=72.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEeC--CCCcccc------cchhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFLY--PDPHFKR------CKYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~f--~d~~f~~------~h~~~   79 (169)
                      ..+|||||||+|     +++.+|+.+++++|++ .++.  ++++.     ..+..+...+  +-|.||.      .|+..
T Consensus       185 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~  261 (348)
T 3lst_A          185 TGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWG  261 (348)
T ss_dssp             SEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSC
T ss_pred             CceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCC
Confidence            679999999999     7778899999999994 4544  22221     1122221112  1123442      12211


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEeCCh------HHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHH
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTITDVK------DLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTR  153 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~~------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~  153 (169)
                      ......++++++++|||||+|++.+...      .+..++.-.+....            .    ...++..+++....+
T Consensus       262 d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~------------~----~~~~t~~e~~~ll~~  325 (348)
T 3lst_A          262 DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAAR------------T----GQERTAAELEPLFTA  325 (348)
T ss_dssp             HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTT------------S----CCCCBHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcC------------C----CcCCCHHHHHHHHHH
Confidence            1112479999999999999999975321      11111110111000            0    123556788888999


Q ss_pred             cCCCeEEEE
Q psy13086        154 NKGEKFCAV  162 (169)
Q Consensus       154 ~g~~i~~~~  162 (169)
                      .|..+..+.
T Consensus       326 aGf~~~~~~  334 (348)
T 3lst_A          326 AGLRLDRVV  334 (348)
T ss_dssp             TTEEEEEEE
T ss_pred             CCCceEEEE
Confidence            998775543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.92  E-value=4.7e-09  Score=84.49  Aligned_cols=84  Identities=7%  Similarity=0.093  Sum_probs=55.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeC-CHHHHHHHHHHh-----c-cccc-----eEEE---eC----------
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEI-RVKVSDYVIDEW-----S-LYLK-----KMFF---LY----------   67 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDi-s~~~l~~a~~~~-----~-~~~d-----~v~~---~f----------   67 (169)
                      +.+|||||||+|     ++.. ...+|+|+|+ |+.|++.|++++     . ..++     .+.+   ..          
T Consensus        80 ~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  158 (281)
T 3bzb_A           80 GKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC  158 (281)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred             CCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence            578999999999     3333 3348999999 899999999887     3 1111     2221   11          


Q ss_pred             -CCCccccc------chhhhcccHHHHHHHHHhcc---C--CcEEEEEe
Q psy13086         68 -PDPHFKRC------KYKWRIINQNLLSEYAYVLS---E--GGIVYTIT  104 (169)
Q Consensus        68 -~d~~f~~~------h~~~~~~~~~~l~~~~rvLk---p--GG~l~i~~  104 (169)
                       ++..||..      ++..  ....+++.+.++||   |  ||.+++..
T Consensus       159 ~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          159 TGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             HSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             ccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence             12334431      1111  13679999999999   9  99987764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.92  E-value=1.9e-09  Score=91.30  Aligned_cols=84  Identities=11%  Similarity=0.017  Sum_probs=57.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPH   71 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~   71 (169)
                      +.+|||+|||||     ++..  ++.|+|+|+|+.|++.|++|+.                     +.+|.|.+.  .|.
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~d--pP~  290 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLD--PPT  290 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEEC--CCC
T ss_pred             CCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEEC--CCc
Confidence            689999999999     3333  4569999999999999998753                     125555443  222


Q ss_pred             cccc-chhhhc--ccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         72 FKRC-KYKWRI--INQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        72 f~~~-h~~~~~--~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      |... ......  ....+++.+.++|||||.|++.+.
T Consensus       291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            3211 000000  125789999999999999997764

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.92  E-value=7.1e-10  Score=91.69  Aligned_cols=84  Identities=17%  Similarity=0.074  Sum_probs=56.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeC--CCCcccc------cchhhhcccH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLY--PDPHFKR------CKYKWRIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f--~d~~f~~------~h~~~~~~~~   84 (169)
                      ..+|||||||+|     +++.+|+.+++|+|+ +.|++.|++. + .+..+...+  +-|.||.      .|+.......
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~  265 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-N-NLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCL  265 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-T-TEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-C-CcEEEeccccCCCCCccEEEeehhhccCCHHHHH
Confidence            579999999999     777889999999999 9999888642 1 111111111  1112332      1221111123


Q ss_pred             HHHHHHHHhccC---CcEEEEEe
Q psy13086         85 NLLSEYAYVLSE---GGIVYTIT  104 (169)
Q Consensus        85 ~~l~~~~rvLkp---GG~l~i~~  104 (169)
                      .++++++++|||   ||++++..
T Consensus       266 ~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          266 RILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             HHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEE
Confidence            799999999999   99999875

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.91  E-value=5.1e-10  Score=93.28  Aligned_cols=84  Identities=19%  Similarity=0.133  Sum_probs=55.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCC--CCcccc------cchhhhcccH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYP--DPHFKR------CKYKWRIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~--d~~f~~------~h~~~~~~~~   84 (169)
                      ..+|||||||+|     +++++|+.+++++|+ +.|++.|++. + .+..+...+.  -|.+|.      .|+.......
T Consensus       210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~-~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~  286 (372)
T 1fp1_D          210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-S-GIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCI  286 (372)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-T-TEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHH
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-C-CCEEEeCCcccCCCCCCEEEEecccccCCHHHHH
Confidence            679999999999     777889999999999 9999887642 1 1111111111  111332      1221111123


Q ss_pred             HHHHHHHHhccCCcEEEEEe
Q psy13086         85 NLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .++++++++|||||++++.+
T Consensus       287 ~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          287 EFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEEE
Confidence            79999999999999999873

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.91  E-value=1.8e-09  Score=89.31  Aligned_cols=76  Identities=14%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c------------------ccceEEEeCCCCcccc
Q psy13086         17 KKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS-L------------------YLKKMFFLYPDPHFKR   74 (169)
Q Consensus        17 ~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~-~------------------~~d~v~~~f~d~~f~~   74 (169)
                      ++.+|||+|||+|   +. .....+|+|+|+|+.+++.|++|+. .                  .+|.|.+..  |.+  
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dp--P~~--  269 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNL--PKF--  269 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECC--TTT--
T ss_pred             CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECC--cHh--
Confidence            3679999999999   44 3356799999999999999998764 1                  233333211  111  


Q ss_pred             cchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         75 CKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        75 ~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                              ...+++++.++|+|||.+++.+.
T Consensus       270 --------~~~~l~~~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          270 --------AHKFIDKALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             --------GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             --------HHHHHHHHHHHcCCCCEEEEEEe
Confidence                    13689999999999999988753

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.89  E-value=8.3e-09  Score=78.20  Aligned_cols=92  Identities=11%  Similarity=0.134  Sum_probs=56.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------cccceEEEeCCCCcccccchhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------LYLKKMFFLYPDPHFKRCKYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------~~~d~v~~~f~d~~f~~~h~~~   79 (169)
                      +.+|||+|||+|     ++.. +..+++|+|+|+.|++.|++++.             .++|.|.+..|-.+.      +
T Consensus        52 ~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~------~  124 (200)
T 1ne2_A           52 GRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSV------V  124 (200)
T ss_dssp             TSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC----------
T ss_pred             CCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhc------c
Confidence            678999999999     3333 44579999999999999998752             245555443221111      1


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcC
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEH  120 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~  120 (169)
                      .-....+++++.++|  |+ +++..+... ..+..+.+...
T Consensus       125 ~~~~~~~l~~~~~~~--g~-~~~~~~~~~-~~~~~~~~~~~  161 (200)
T 1ne2_A          125 KHSDRAFIDKAFETS--MW-IYSIGNAKA-RDFLRREFSAR  161 (200)
T ss_dssp             ---CHHHHHHHHHHE--EE-EEEEEEGGG-HHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHhc--Cc-EEEEEcCch-HHHHHHHHHHC
Confidence            112357899999998  44 555443322 34444544443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.88  E-value=4.4e-09  Score=88.57  Aligned_cols=87  Identities=11%  Similarity=0.127  Sum_probs=56.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c--------------------------ccceEEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L--------------------------YLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~--------------------------~~d~v~~   65 (169)
                      +.+|||+|||+|     +|.. ...+|+|||+|+.|++.|++|+. .                          ++|.|.+
T Consensus       213 ~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~  291 (385)
T 2b78_A          213 GKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  291 (385)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence            678999999999     3332 23489999999999999987653 1                          3444433


Q ss_pred             eCCCCccccc-chhhhc--ccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         66 LYPDPHFKRC-KYKWRI--INQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        66 ~f~d~~f~~~-h~~~~~--~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                      .  .|.+... ......  ...++++++.++|+|||.+++++...
T Consensus       292 D--PP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          292 D--PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             C--CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             C--CCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            2  1222100 000000  12457888899999999999987543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.88  E-value=1.4e-09  Score=88.20  Aligned_cols=75  Identities=9%  Similarity=0.173  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCc
Q psy13086         17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPH   71 (169)
Q Consensus        17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~   71 (169)
                      ++.+|||+|||+|    .+.....++|+++|+|+.+++.+++|+.                     ..+|.|.+..|.. 
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~~-  203 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVR-  203 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCSS-
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCCc-
Confidence            3689999999999    2223355799999999999999998865                     2233333332210 


Q ss_pred             ccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         72 FKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        72 f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                                 ...++..+.++|||||.+++-
T Consensus       204 -----------~~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          204 -----------THEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             -----------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             -----------HHHHHHHHHHHcCCCCEEEEE
Confidence                       246888889999999998764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.86  E-value=2.4e-09  Score=90.31  Aligned_cols=84  Identities=15%  Similarity=0.216  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEEe--------CCCCcccccch-----
Q psy13086         17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFFL--------YPDPHFKRCKY-----   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~~--------f~d~~f~~~h~-----   77 (169)
                      ++.+|||||||||    +|.+....+|+|||.|+ |++.|++.+. +.+ +.|.+.        .|. .+|..-.     
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe-~~DvivsE~~~~  160 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPE-QVDAIVSEWMGY  160 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSS-CEEEEECCCCBT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCc-cccEEEeecccc
Confidence            3678999999999    44444445899999995 8888887654 111 112111        111 1111000     


Q ss_pred             --hhhcccHHHHHHHHHhccCCcEEEE
Q psy13086         78 --KWRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        78 --~~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                        ...-..+.++....|.|||||.++.
T Consensus       161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          161 GLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccchhhhHHHHHHhhCCCCceECC
Confidence              0000236788888999999998854

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.85  E-value=4.7e-09  Score=88.31  Aligned_cols=87  Identities=13%  Similarity=0.015  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEE
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFF   65 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~   65 (169)
                      ++.+|||+|||+|     ++.. +..+|+|+|+|+.+++.|++++.                          .++|.|.+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            3689999999999     4433 34599999999999999987643                          13444443


Q ss_pred             eCCCCccccc-chhhh--cccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         66 LYPDPHFKRC-KYKWR--IINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        66 ~f~d~~f~~~-h~~~~--~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      .-  |.|... .....  -....++.++.++|+|||.+++++..
T Consensus       296 dp--P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          296 DP--PAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             CC--CCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CC--CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            21  222110 00000  01357899999999999999988654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.85  E-value=2.7e-09  Score=89.54  Aligned_cols=85  Identities=14%  Similarity=0.008  Sum_probs=58.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------------cccceEEEeC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------------LYLKKMFFLY   67 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------------~~~d~v~~~f   67 (169)
                      +.+|||+|||+|     ++..  ..+|+|+|+|+.+++.|++++.                         .++|.|.+.-
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp  287 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP  287 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence            568999999999     4444  5689999999999999988743                         1345544321


Q ss_pred             CCCccccc-chhhh--cccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         68 PDPHFKRC-KYKWR--IINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        68 ~d~~f~~~-h~~~~--~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                        |.|... .....  -....+++++.++|+|||.+++++..
T Consensus       288 --P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          288 --PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             --CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             --CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence              222110 00000  01256899999999999999998754

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.85  E-value=7.3e-10  Score=94.26  Aligned_cols=77  Identities=16%  Similarity=0.091  Sum_probs=52.3

Q ss_pred             CCeEEEEcCc------cc-----ccC-cCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEe
Q psy13086         18 KVEFVDVGCG------KL-----YLP-MFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG------~G-----la~-~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~   66 (169)
                      ..+|||||||      +|     ++. .+|+.+|+|||+|+.|... ..++.                   +++|.|...
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~-~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisd  295 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVD-ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDD  295 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGC-BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEEC
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhc-CCCcEEEEecccccchhhhhhcccCCccEEEEC
Confidence            6799999999      55     444 4689999999999998421 11111                   345555431


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .       .|+...  ...+|++++|+|||||.|++.+
T Consensus       296 g-------sH~~~d--~~~aL~el~rvLKPGGvlVi~D  324 (419)
T 3sso_A          296 G-------SHINAH--VRTSFAALFPHVRPGGLYVIED  324 (419)
T ss_dssp             S-------CCCHHH--HHHHHHHHGGGEEEEEEEEEEC
T ss_pred             C-------cccchh--HHHHHHHHHHhcCCCeEEEEEe
Confidence            1       122111  2579999999999999999863

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.84  E-value=9.6e-10  Score=95.30  Aligned_cols=84  Identities=12%  Similarity=0.093  Sum_probs=51.9

Q ss_pred             CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEE---eCCC----Ccccccc------hh
Q psy13086         18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFF---LYPD----PHFKRCK------YK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~---~f~d----~~f~~~h------~~   78 (169)
                      +.+|||||||+|    .+...+..+|+|+|+|+ |++.|++++. ..+ +.+.+   .+.+    ..||..-      +.
T Consensus       159 ~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~~~  237 (480)
T 3b3j_A          159 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYML  237 (480)
T ss_dssp             TCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHHHH
T ss_pred             CCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchHhc
Confidence            579999999999    22235667999999998 9999987754 111 11221   1111    1233211      00


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEE
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                      ..-.....+.+++++|||||.+++
T Consensus       238 ~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          238 FNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             TCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             CcHHHHHHHHHHHHhcCCCCEEEE
Confidence            000013567788999999999985

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.83  E-value=6.7e-10  Score=89.88  Aligned_cols=82  Identities=10%  Similarity=-0.037  Sum_probs=48.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH----------hc-------------cccceEEEeCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE----------WS-------------LYLKKMFFLYPD   69 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~----------~~-------------~~~d~v~~~f~d   69 (169)
                      +.+|||||||+|     +++.   .+|+|||+|+ |+..|+++          +.             .++|.|...+. 
T Consensus        83 g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~~-  157 (276)
T 2wa2_A           83 KGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDIG-  157 (276)
T ss_dssp             CEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECCC-
T ss_pred             CCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECCC-
Confidence            678999999999     5555   6999999998 64433221          11             22333333222 


Q ss_pred             CcccccchhhhcccHHHHHHHHHhccCCc--EEEEEeC
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYAYVLSEGG--IVYTITD  105 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG--~l~i~~d  105 (169)
                      ... ..+.....-...+++++.++|||||  .|++...
T Consensus       158 ~~~-~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~  194 (276)
T 2wa2_A          158 ESN-PTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL  194 (276)
T ss_dssp             CCC-SCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             cCC-CchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence            000 0000000000137899999999999  9988653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.81  E-value=1.9e-08  Score=85.85  Aligned_cols=92  Identities=11%  Similarity=0.044  Sum_probs=57.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCC------Ccccccch--hhhccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPD------PHFKRCKY--KWRIIN   83 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d------~~f~~~h~--~~~~~~   83 (169)
                      +.+|||+|||+|     +|..  ..+|+|+|+|+.|++.|++++. ..++ +.+...|      ..||..-.  -+.-..
T Consensus       291 ~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g~~  367 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAGLH  367 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTCSC
T ss_pred             CCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccchH
Confidence            678999999999     4443  4699999999999999998765 2222 2111000      01221000  000012


Q ss_pred             HHHHHHHHHhccCCcEEEEEeCChHHHHHH
Q psy13086         84 QNLLSEYAYVLSEGGIVYTITDVKDLHDWI  113 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~  113 (169)
                      ..+++.+. .|+|||.++++++...+...+
T Consensus       368 ~~~~~~l~-~l~p~givyvsc~p~tlarDl  396 (425)
T 2jjq_A          368 PRLVKRLN-REKPGVIVYVSCNPETFARDV  396 (425)
T ss_dssp             HHHHHHHH-HHCCSEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHH-hcCCCcEEEEECChHHHHhHH
Confidence            45677664 599999999988666655543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.80  E-value=1e-08  Score=81.77  Aligned_cols=84  Identities=10%  Similarity=-0.020  Sum_probs=52.3

Q ss_pred             CCeEEEEcCccc-cc--CcCCCCcEEEEeCCHHHHHHHHHHhc-cccc--eEEEeCC----CCccc------ccchhhhc
Q psy13086         18 KVEFVDVGCGKL-YL--PMFPSTLILGLEIRVKVSDYVIDEWS-LYLK--KMFFLYP----DPHFK------RCKYKWRI   81 (169)
Q Consensus        18 ~~~iLDiGCG~G-la--~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d--~v~~~f~----d~~f~------~~h~~~~~   81 (169)
                      ..+|||||||+| |+  .. +...++|+||++.|++.+++++. ...+  .....+.    ...+|      ..|+..+.
T Consensus       106 p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~LE~q  184 (253)
T 3frh_A          106 PRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPLLERE  184 (253)
T ss_dssp             CSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHHHHHH
T ss_pred             CCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHHhhhh
Confidence            579999999999 33  23 88999999999999999998764 1111  1111111    11222      22333222


Q ss_pred             ccHHHHHHHHHhccCCcEEEEE
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      -....+ .+...|+++|.++-.
T Consensus       185 ~~~~~~-~ll~aL~~~~vvVsf  205 (253)
T 3frh_A          185 QAGSAM-ALLQSLNTPRMAVSF  205 (253)
T ss_dssp             STTHHH-HHHHHCBCSEEEEEE
T ss_pred             chhhHH-HHHHHhcCCCEEEEc
Confidence            223344 778899999887643

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.80  E-value=1.5e-08  Score=84.79  Aligned_cols=85  Identities=9%  Similarity=0.027  Sum_probs=56.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe-------CC---CCcccccch----
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL-------YP---DPHFKRCKY----   77 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~-------f~---d~~f~~~h~----   77 (169)
                      +.+||||| |+|     ++...+..+|+|+|+|+.|++.|+++++ ..++.+.+.       ++   +..||..-.    
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~  251 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE  251 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence            57999999 999     5556676799999999999999998765 112222211       11   112332110    


Q ss_pred             -hhhcccHHHHHHHHHhccCCcE-EEEEeC
Q psy13086         78 -KWRIINQNLLSEYAYVLSEGGI-VYTITD  105 (169)
Q Consensus        78 -~~~~~~~~~l~~~~rvLkpGG~-l~i~~d  105 (169)
                       ...  ...+++++.++|||||+ +++.+.
T Consensus       252 ~~~~--~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          252 TLEA--IRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             SHHH--HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             chHH--HHHHHHHHHHHcccCCeEEEEEEe
Confidence             001  25799999999999994 355543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.79  E-value=1.2e-09  Score=87.79  Aligned_cols=83  Identities=7%  Similarity=-0.126  Sum_probs=48.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH----------hc-------------cccceEEEeCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE----------WS-------------LYLKKMFFLYPD   69 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~----------~~-------------~~~d~v~~~f~d   69 (169)
                      +.+|||||||+|     +++.   .+|+|||+|+ |+..++++          +.             .++|.|...+. 
T Consensus        75 g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~~-  149 (265)
T 2oxt_A           75 TGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDVG-  149 (265)
T ss_dssp             CEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-
T ss_pred             CCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeCc-
Confidence            678999999999     4444   6999999998 64332211          10             22333333222 


Q ss_pred             CcccccchhhhcccHHHHHHHHHhccCCc--EEEEEeCC
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYAYVLSEGG--IVYTITDV  106 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG--~l~i~~d~  106 (169)
                      .... .+.....-...+++++.++|||||  .|++....
T Consensus       150 ~~~~-~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          150 ESSP-KWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CCCS-CHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             ccCC-ccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            0000 000000000137899999999999  99987643

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.78  E-value=4e-09  Score=78.41  Aligned_cols=77  Identities=14%  Similarity=0.024  Sum_probs=52.2

Q ss_pred             CCCCCeEEEEcCcccccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEE-----EeC---CCCcccc------cchh-h
Q psy13086         15 CEKKVEFVDVGCGKLYLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMF-----FLY---PDPHFKR------CKYK-W   79 (169)
Q Consensus        15 ~~~~~~iLDiGCG~Gla~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~-----~~f---~d~~f~~------~h~~-~   79 (169)
                      |.++.+|||||||+           +++|+|+.|++.|+++....+..+.     +.+   ++..||.      .|+. .
T Consensus        10 ~~~g~~vL~~~~g~-----------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~   78 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTL   78 (176)
T ss_dssp             CCTTSEEEEEECTT-----------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCC
T ss_pred             CCCCCEEEEecCCc-----------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhccc
Confidence            34578999999996           2399999999999987641111111     122   3444543      2222 1


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        ....++++++|+|||||.|++..
T Consensus        79 --~~~~~l~~~~r~LkpgG~l~~~~  101 (176)
T 2ld4_A           79 --HSAEILAEIARILRPGGCLFLKE  101 (176)
T ss_dssp             --CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --CHHHHHHHHHHHCCCCEEEEEEc
Confidence              13789999999999999999964

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.78  E-value=5.1e-09  Score=92.21  Aligned_cols=86  Identities=8%  Similarity=0.089  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--c--ccceEE-----E--eCCCCcccc------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--L--YLKKMF-----F--LYPDPHFKR------   74 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~--~~d~v~-----~--~f~d~~f~~------   74 (169)
                      ++.+|||||||+|     ||+.  +++|+|||+|+.+|+.|+.+..  +  .++-..     +  .+.+..||.      
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~  143 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV  143 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred             CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence            3468999999999     5544  6899999999999999987643  1  111100     0  123334553      


Q ss_pred             cchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         75 CKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        75 ~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .+|....-.-..+..+.+.|+++|..++.+
T Consensus       144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          144 FHHIVHLHGIDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred             hhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence            233221111123455777888988877754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.77  E-value=1.2e-08  Score=92.18  Aligned_cols=85  Identities=11%  Similarity=0.100  Sum_probs=58.6

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEEeC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFFLY   67 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~~f   67 (169)
                      ++.+|||+|||||     ++. ....+|++||+|+.|++.|++|+.                        .++|.|.+. 
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~-~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D-  616 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGL-GGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID-  616 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC-
T ss_pred             CCCcEEEeeechhHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC-
Confidence            3678999999999     232 223469999999999999998753                        235554432 


Q ss_pred             CCCccccc-------chhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         68 PDPHFKRC-------KYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        68 ~d~~f~~~-------h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                       .|.|...       +..+  ....+++++.++|||||.|++++..
T Consensus       617 -PP~f~~~~~~~~~~~~~~--~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          617 -PPTFSNSKRMEDAFDVQR--DHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             -CCSBC-------CCBHHH--HHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             -CccccCCccchhHHHHHH--HHHHHHHHHHHhcCCCcEEEEEECC
Confidence             2233211       1111  1357899999999999999998765

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.77  E-value=7e-09  Score=83.86  Aligned_cols=39  Identities=13%  Similarity=0.143  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|||||||+|     ++..  ..+++|||+|+.|++.|++++.
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~   71 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQ   71 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHH
Confidence            3678999999999     4444  3589999999999999988753

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.75  E-value=2.3e-08  Score=84.19  Aligned_cols=86  Identities=12%  Similarity=0.033  Sum_probs=56.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c--------------------------ccceEEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L--------------------------YLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~--------------------------~~d~v~~   65 (169)
                      +.+|||+|||+|     ++.. ...+|+|+|+|+.+++.|++++. .                          .+|.|.+
T Consensus       221 ~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~  299 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence            678999999999     4433 24589999999999999987643 1                          2333333


Q ss_pred             eCCCCccccc-chhhh--cccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         66 LYPDPHFKRC-KYKWR--IINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        66 ~f~d~~f~~~-h~~~~--~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      .-  |.+... .....  -....++.++.++|+|||.+++++..
T Consensus       300 dp--P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  341 (396)
T 3c0k_A          300 DP--PKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS  341 (396)
T ss_dssp             CC--SSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CC--CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            21  111100 00000  01257899999999999999998754

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.74  E-value=4.5e-09  Score=86.99  Aligned_cols=84  Identities=18%  Similarity=0.079  Sum_probs=55.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeC--CCCcccc------cchhhhcccH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLY--PDPHFKR------CKYKWRIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f--~d~~f~~------~h~~~~~~~~   84 (169)
                      ..+|||||||+|     +++.+|+.+++++|+ +.|++.|++. + .+..+...+  +-|.+|.      .|+...-...
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~  270 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN-E-NLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSL  270 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC-S-SEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC-C-CcEEEeCccCCCCCCceEEEEcccccCCCHHHHH
Confidence            578999999999     777889999999999 7888877641 1 111111111  1112332      1221111123


Q ss_pred             HHHHHHHHhccC---CcEEEEEe
Q psy13086         85 NLLSEYAYVLSE---GGIVYTIT  104 (169)
Q Consensus        85 ~~l~~~~rvLkp---GG~l~i~~  104 (169)
                      .++++++++|||   ||++++.+
T Consensus       271 ~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          271 KILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             HHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEE
Confidence            899999999999   99999874

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.72  E-value=6.2e-09  Score=85.95  Aligned_cols=87  Identities=9%  Similarity=0.108  Sum_probs=56.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCC-----CcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPS-----TLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYP   68 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~-----~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~   68 (169)
                      ..+|||+|||+|     ++...+.     .+++|+|+++.+++.|+.++.                   ..+|.|...-|
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NPP  210 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDLP  210 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEECC
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECCC
Confidence            578999999999     3333332     689999999999999987643                   23444443322


Q ss_pred             CCcccccchhhhc----------ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         69 DPHFKRCKYKWRI----------INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        69 d~~f~~~h~~~~~----------~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      -.+........+.          ....+++.+.+.|||||++.+++
T Consensus       211 fg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~  256 (344)
T 2f8l_A          211 VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  256 (344)
T ss_dssp             CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence            1111100000000          01358999999999999999987

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.71  E-value=9.7e-09  Score=84.08  Aligned_cols=82  Identities=10%  Similarity=-0.042  Sum_probs=47.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeC----CHHHHHHHH-H-----Hhc------------cccceEEEeCCCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEI----RVKVSDYVI-D-----EWS------------LYLKKMFFLYPDP   70 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDi----s~~~l~~a~-~-----~~~------------~~~d~v~~~f~d~   70 (169)
                      +.+|||||||+|     ++++   ..|+|||+    ++.+++.+. +     ++.            .++|.|....+..
T Consensus        83 g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~~~~  159 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGES  159 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred             CCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECCccc
Confidence            579999999999     5555   58999999    554433211 1     111            2234333322110


Q ss_pred             cccccchhh-hcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         71 HFKRCKYKW-RIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        71 ~f~~~h~~~-~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                         ..++.. ......+|+++.++|||||.|++...
T Consensus       160 ---~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~  192 (305)
T 2p41_A          160 ---SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL  192 (305)
T ss_dssp             ---CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             ---cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence               001100 00001478999999999999998754

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.69  E-value=1.1e-07  Score=81.00  Aligned_cols=103  Identities=14%  Similarity=0.104  Sum_probs=61.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe---C---------CCCcccccchh-
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL---Y---------PDPHFKRCKYK-   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~---f---------~d~~f~~~h~~-   78 (169)
                      +.+|||+|||+|     ++..  ..+|+|+|+|+.|++.|++++. ..++.+.+.   .         ++..||..-.. 
T Consensus       287 ~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dP  364 (433)
T 1uwv_A          287 EDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP  364 (433)
T ss_dssp             TCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECC
T ss_pred             CCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECC
Confidence            578999999999     5554  5799999999999999998764 222222211   1         11112211000 


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                      .+.-..++++.+. .++|++.++++++...+.... ..+.+. +|..
T Consensus       365 Pr~g~~~~~~~l~-~~~p~~ivyvsc~p~tlard~-~~l~~~-Gy~~  408 (433)
T 1uwv_A          365 ARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDS-EALLKA-GYTI  408 (433)
T ss_dssp             CTTCCHHHHHHHH-HHCCSEEEEEESCHHHHHHHH-HHHHHT-TCEE
T ss_pred             CCccHHHHHHHHH-hcCCCeEEEEECChHHHHhhH-HHHHHC-CcEE
Confidence            0001235666654 479999999987766666544 334433 3444

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.67  E-value=4.9e-09  Score=88.04  Aligned_cols=100  Identities=11%  Similarity=0.089  Sum_probs=63.6

Q ss_pred             CCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc------------cccceEEEeCCCCcccccc---
Q psy13086         18 KVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS------------LYLKKMFFLYPDPHFKRCK---   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~------------~~~d~v~~~f~d~~f~~~h---   76 (169)
                      ..+|||+|||+|     +++++ +..+++|+|+++.|++.| .++.            ..+|.|..+-  |+.....   
T Consensus        40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-~~~~~~~~D~~~~~~~~~fD~Ii~NP--Py~~~~~~~~  116 (421)
T 2ih2_A           40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-PWAEGILADFLLWEPGEAFDLILGNP--PYGIVGEASK  116 (421)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-TTEEEEESCGGGCCCSSCEEEEEECC--CCCCBSCTTT
T ss_pred             CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-CCCcEEeCChhhcCccCCCCEEEECc--CccCcccccc
Confidence            569999999999     44444 568999999999999877 2222            3566665431  2211100   


Q ss_pred             -------hhhhc-------------ccHHHHHHHHHhccCCcEEEEEeCCh----HHHHHHHHHHhcC
Q psy13086         77 -------YKWRI-------------INQNLLSEYAYVLSEGGIVYTITDVK----DLHDWIVSHFTEH  120 (169)
Q Consensus        77 -------~~~~~-------------~~~~~l~~~~rvLkpGG~l~i~~d~~----~~~~~~~~~~~~~  120 (169)
                             ..+..             ....+++.+.++|+|||.+.++++..    .....+++.+.++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~  184 (421)
T 2ih2_A          117 YPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLARE  184 (421)
T ss_dssp             CSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhc
Confidence                   00000             12378999999999999999987543    2334455555443

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.61  E-value=4.7e-08  Score=82.30  Aligned_cols=87  Identities=10%  Similarity=-0.065  Sum_probs=58.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c---------------ccceEEEeCCC-------
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L---------------YLKKMFFLYPD-------   69 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~---------------~~d~v~~~f~d-------   69 (169)
                      +.+|||+|||+|     ++.+.+...|+++|+++.+++.|++|+. .               .++.+.+...|       
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            568999999999     5666677789999999999999998765 2               33333322111       


Q ss_pred             --CcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         70 --PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        70 --~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        ..||......--....+++.+.+.|||||.++++.
T Consensus       128 ~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          128 RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             STTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence              01221110000012579999999999999998875

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.61  E-value=8.8e-08  Score=77.92  Aligned_cols=38  Identities=18%  Similarity=0.446  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      ++.+|||||||+|     ++..  ..+|+|+|+|+.|++.|++++
T Consensus        42 ~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~   84 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRC   84 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHH
T ss_pred             CcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHH
Confidence            3678999999999     4444  469999999999999998875

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.53  E-value=1.2e-08  Score=83.12  Aligned_cols=101  Identities=12%  Similarity=0.032  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCcc------c---ccCcCC-CCcEEEEeCCHHHHHHHHHHh-c----------cccceEEEeCCCCcccc-
Q psy13086         17 KKVEFVDVGCGK------L---YLPMFP-STLILGLEIRVKVSDYVIDEW-S----------LYLKKMFFLYPDPHFKR-   74 (169)
Q Consensus        17 ~~~~iLDiGCG~------G---la~~~p-~~~v~GiDis~~~l~~a~~~~-~----------~~~d~v~~~f~d~~f~~-   74 (169)
                      ++.+|||||||+      |   +++..+ +..|+|+|+|+. +..+  .+ -          .++|.|......++... 
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v~~v--~~~i~gD~~~~~~~~~fD~Vvsn~~~~~~g~~  139 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-VSDA--DSTLIGDCATVHTANKWDLIISDMYDPRTKHV  139 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-BCSS--SEEEESCGGGCCCSSCEEEEEECCCCCC---C
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-CCCC--EEEEECccccCCccCcccEEEEcCCccccccc
Confidence            367999999955      5   445555 689999999987 3111  11 1          35676665432222100 


Q ss_pred             --cchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcC
Q psy13086         75 --CKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEH  120 (169)
Q Consensus        75 --~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~  120 (169)
                        .+.........+++++.++|||||.|++..............+..+
T Consensus       140 ~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~  187 (290)
T 2xyq_A          140 TKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHF  187 (290)
T ss_dssp             CSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTE
T ss_pred             cccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHc
Confidence              0000000125799999999999999999653222122344444443

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.51  E-value=5.6e-07  Score=73.76  Aligned_cols=41  Identities=7%  Similarity=0.074  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|||+|||+|     +|... +...|+|+|+++.+++.+++++.
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~  148 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLA  148 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            4679999999999     55543 55799999999999999988754

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.51  E-value=2.5e-07  Score=77.26  Aligned_cols=38  Identities=16%  Similarity=0.127  Sum_probs=32.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.+|||+|||+|     +|..  ..+|+|+|+|+.|++.|++|+.
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~  256 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIA  256 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHH
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHH
Confidence            467999999999     5543  3589999999999999998765

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.40  E-value=7.2e-07  Score=75.13  Aligned_cols=71  Identities=17%  Similarity=0.189  Sum_probs=44.4

Q ss_pred             CcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhcc
Q psy13086         37 TLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLS   95 (169)
Q Consensus        37 ~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLk   95 (169)
                      ..|+|+|+++.|++.|++|+.                     .++|.|.   .||-+..+... .-....+.+++.++||
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv---~NPPyg~rl~~-~~~l~~ly~~lg~~lk  333 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFII---TNPPYGERLED-KDSVKQLYKELGYAFR  333 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEE---ECCCCCCSHHH-HHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEE---ECCCCcCccCC-HHHHHHHHHHHHHHHh
Confidence            579999999999999998764                     1122222   22222211100 0012457777777887


Q ss_pred             C--CcEEEEEeCChHHHH
Q psy13086         96 E--GGIVYTITDVKDLHD  111 (169)
Q Consensus        96 p--GG~l~i~~d~~~~~~  111 (169)
                      +  ||.+++.|..+.+..
T Consensus       334 ~~~g~~~~iit~~~~l~~  351 (385)
T 3ldu_A          334 KLKNWSYYLITSYEDFEY  351 (385)
T ss_dssp             TSBSCEEEEEESCTTHHH
T ss_pred             hCCCCEEEEEECCHHHHH
Confidence            7  999999887776655

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.39  E-value=7.5e-07  Score=75.29  Aligned_cols=71  Identities=14%  Similarity=0.118  Sum_probs=43.5

Q ss_pred             CcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhcc
Q psy13086         37 TLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLS   95 (169)
Q Consensus        37 ~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLk   95 (169)
                      ..|+|+|+|+.|++.|++|+.                     .++|.|.   .+|-+..+.... -....+.+++.++||
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv---~NPPYg~rl~~~-~~l~~ly~~lg~~lk  339 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVV---ANPPYGERLEDE-EAVRQLYREMGIVYK  339 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEE---ECCCCCCSHHHH-HHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEE---ECCCCccccCCc-hhHHHHHHHHHHHHh
Confidence            569999999999999998764                     1122222   222222111000 012346666667777


Q ss_pred             C--CcEEEEEeCChHHHH
Q psy13086         96 E--GGIVYTITDVKDLHD  111 (169)
Q Consensus        96 p--GG~l~i~~d~~~~~~  111 (169)
                      +  ||.+++.|..+.+..
T Consensus       340 ~~~g~~~~iit~~~~l~~  357 (393)
T 3k0b_A          340 RMPTWSVYVLTSYELFEE  357 (393)
T ss_dssp             TCTTCEEEEEECCTTHHH
T ss_pred             cCCCCEEEEEECCHHHHH
Confidence            6  999999988777655

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.37  E-value=1.3e-06  Score=73.68  Aligned_cols=71  Identities=10%  Similarity=0.078  Sum_probs=44.4

Q ss_pred             CcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhcc
Q psy13086         37 TLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLS   95 (169)
Q Consensus        37 ~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLk   95 (169)
                      ..++|+|+|+.|++.|++|+.                     .++|.|.   .||-+..+.... -....+.+++.++||
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv---~NPPYG~rl~~~-~~l~~ly~~lg~~lk  332 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLI---SNPPYGERLLDD-KAVDILYNEMGETFA  332 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEE---ECCCCTTTTSCH-HHHHHHHHHHHHHHT
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEE---ECCchhhccCCH-HHHHHHHHHHHHHHh
Confidence            569999999999999998865                     1122222   222222111000 012456777777777


Q ss_pred             C--CcEEEEEeCChHHHH
Q psy13086         96 E--GGIVYTITDVKDLHD  111 (169)
Q Consensus        96 p--GG~l~i~~d~~~~~~  111 (169)
                      +  ||.+++.|..+++..
T Consensus       333 ~~~g~~~~iit~~~~l~~  350 (384)
T 3ldg_A          333 PLKTWSQFILTNDTDFEQ  350 (384)
T ss_dssp             TCTTSEEEEEESCTTHHH
T ss_pred             hCCCcEEEEEECCHHHHH
Confidence            7  999999988776654

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.35  E-value=2.4e-07  Score=79.13  Aligned_cols=86  Identities=14%  Similarity=0.135  Sum_probs=55.9

Q ss_pred             CCeEEEEcCccc-----ccCcC-------------CCCcEEEEeCCHHHHHHHHHHhc----------------------
Q psy13086         18 KVEFVDVGCGKL-----YLPMF-------------PSTLILGLEIRVKVSDYVIDEWS----------------------   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~-------------p~~~v~GiDis~~~l~~a~~~~~----------------------   57 (169)
                      +.+|||.|||+|     ++...             +..+++|+|+++.+++.|+.++.                      
T Consensus       172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~  251 (445)
T 2okc_A          172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS  251 (445)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS
T ss_pred             CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCccc
Confidence            568999999999     22211             34689999999999999987642                      


Q ss_pred             cccceEEEeCCCCcccccchh-----h-hc------ccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         58 LYLKKMFFLYPDPHFKRCKYK-----W-RI------INQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        58 ~~~d~v~~~f~d~~f~~~h~~-----~-~~------~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ..+|.|..+   |-|......     + .+      ....+++.+.++|||||++.++++.
T Consensus       252 ~~fD~Iv~N---PPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          252 TLVDVILAN---PPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             SCEEEEEEC---CCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CCcCEEEEC---CCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            134444332   222111000     0 00      0137899999999999999988743

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.34  E-value=1.5e-06  Score=70.91  Aligned_cols=83  Identities=14%  Similarity=0.085  Sum_probs=64.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~   65 (169)
                      ..+||=||-|.|     +.+..+..+++.|||++.+++.|++-++                           ..+|.|.+
T Consensus        84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~  163 (294)
T 3o4f_A           84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIIS  163 (294)
T ss_dssp             CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEE
Confidence            578999999999     4444456799999999999999986431                           56788877


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..+||.-..    ..+...++++.++++|+|||.++..+
T Consensus       164 D~~dp~~~~----~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          164 DCTDPIGPG----ESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             SCCCCCCTT----CCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             eCCCcCCCc----hhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            777764221    23456789999999999999999875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.32  E-value=3.3e-07  Score=74.94  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=35.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.+|||+|||+|     ++...|+.+|+|+|+|+.|++.|++++.
T Consensus        27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~   71 (301)
T 1m6y_A           27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK   71 (301)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG
T ss_pred             CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            679999999999     6677778899999999999999998754

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.31  E-value=6.5e-07  Score=71.50  Aligned_cols=39  Identities=18%  Similarity=0.310  Sum_probs=33.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|||||||+|     ++..  ..+|+|||+++.|++.+++++.
T Consensus        29 ~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~   72 (255)
T 3tqs_A           29 KTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYN   72 (255)
T ss_dssp             TTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHT
T ss_pred             CcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHh
Confidence            3678999999999     4444  3699999999999999998875

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.30  E-value=9.3e-07  Score=70.71  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=20.7

Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ++..++++++++++|||||+|..-+
T Consensus       189 ~lw~~~~l~~l~~~L~pGG~l~tys  213 (257)
T 2qy6_A          189 DMWTQNLFNAMARLARPGGTLATFT  213 (257)
T ss_dssp             GGCCHHHHHHHHHHEEEEEEEEESC
T ss_pred             hhcCHHHHHHHHHHcCCCcEEEEEe
Confidence            4456899999999999999997533

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.27  E-value=5.6e-07  Score=70.99  Aligned_cols=39  Identities=15%  Similarity=0.288  Sum_probs=33.0

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|||||||+|     ++...  .+++|+|+|+.|++.|++++.
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~   73 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV   73 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT
T ss_pred             CCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhc
Confidence            3678999999999     44443  689999999999999998764

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.26  E-value=4.5e-07  Score=73.33  Aligned_cols=39  Identities=10%  Similarity=0.210  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCC--CcEEEEeCCHHHHHHHHHH
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPS--TLILGLEIRVKVSDYVIDE   55 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~--~~v~GiDis~~~l~~a~~~   55 (169)
                      ++.+|||||||+|     ++...+.  .+|+|||+|+.|++.|+++
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~   87 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR   87 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH
T ss_pred             CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh
Confidence            3678999999999     4444322  4599999999999999887

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.23  E-value=1.2e-06  Score=74.05  Aligned_cols=88  Identities=11%  Similarity=0.064  Sum_probs=57.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCC-CcEEEEeCCHHHHHHHHHHhc-cccce--EEEeCCCC----------cccccchh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPS-TLILGLEIRVKVSDYVIDEWS-LYLKK--MFFLYPDP----------HFKRCKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~-~~v~GiDis~~~l~~a~~~~~-~~~d~--v~~~f~d~----------~f~~~h~~   78 (169)
                      +.+|||++||+|     ++.+.++ ..|+++|+++.+++.+++|+. +.++.  +.+...|.          .||..-..
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD  132 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD  132 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence            578999999999     4554444 589999999999999998876 33322  32222211          12210000


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      .--....+++.+.+.|+|||.++++..
T Consensus       133 P~g~~~~~l~~a~~~Lk~gGll~~t~t  159 (392)
T 3axs_A          133 PFGTPVPFIESVALSMKRGGILSLTAT  159 (392)
T ss_dssp             CSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCcCHHHHHHHHHHHhCCCCEEEEEec
Confidence            000024799999999999999988763

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.21  E-value=1.3e-06  Score=71.23  Aligned_cols=39  Identities=18%  Similarity=0.184  Sum_probs=33.0

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|||||||+|     ++..  ..+|+|||+++.|++.|++++.
T Consensus        50 ~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~   93 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKE   93 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHH
T ss_pred             CcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhc
Confidence            3679999999999     4444  4699999999999999998763

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.21  E-value=6.7e-07  Score=71.06  Aligned_cols=38  Identities=18%  Similarity=0.241  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHH
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDE   55 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~   55 (169)
                      ++.+|||||||+|     ++.. +..+++|||+|+.|++.++++
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS
T ss_pred             CcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc
Confidence            3678999999999     4444 457999999999999999876

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.17  E-value=1.1e-06  Score=70.88  Aligned_cols=38  Identities=16%  Similarity=0.205  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++ +|||||||+|     ++..  ..+|+|||+++.|++.+++++.
T Consensus        47 ~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~   89 (271)
T 3fut_A           47 TG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLS   89 (271)
T ss_dssp             CS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTT
T ss_pred             CC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcC
Confidence            35 8999999999     4444  3699999999999999998865

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.08  E-value=2.6e-06  Score=68.83  Aligned_cols=87  Identities=9%  Similarity=0.056  Sum_probs=49.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH------Hhc-------------cccceEEEeCCCCccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID------EWS-------------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~------~~~-------------~~~d~v~~~f~d~~f~   73 (169)
                      ..+|||||||+|     .+...+...+.|+|++.++......      ++-             ..+|.|.......  .
T Consensus        75 ~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn--s  152 (277)
T 3evf_A           75 EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES--S  152 (277)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC--C
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC--c
Confidence            568999999999     3444455578888888543111110      100             3455544322111  1


Q ss_pred             ccchhhhcccHHHHHHHHHhccCC-cEEEEEeCC
Q psy13086         74 RCKYKWRIINQNLLSEYAYVLSEG-GIVYTITDV  106 (169)
Q Consensus        74 ~~h~~~~~~~~~~l~~~~rvLkpG-G~l~i~~d~  106 (169)
                      ..++....-.-.+++.+.++|||| |.|++..-.
T Consensus       153 G~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          153 SSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             CchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            111111111124589999999999 999998654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.03  E-value=1.9e-06  Score=68.59  Aligned_cols=40  Identities=13%  Similarity=0.104  Sum_probs=31.1

Q ss_pred             CCeEEEEcCccc-ccCcCCCCc--EEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-YLPMFPSTL--ILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~~~p~~~--v~GiDis~~~l~~a~~~~~   57 (169)
                      +.+|||||||+| ++..-...+  |+|+|+++.|++.+++++.
T Consensus        22 ~~~VLEIG~G~G~lt~l~~~~~~~v~avEid~~~~~~a~~~~~   64 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPF   64 (252)
T ss_dssp             TCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTT
T ss_pred             cCEEEEECCCCcHHHHhhhCCCCeEEEEECCHHHHHHHHHHhc
Confidence            578999999999 332111245  9999999999999988653

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.00  E-value=1.7e-05  Score=66.82  Aligned_cols=88  Identities=14%  Similarity=0.021  Sum_probs=61.5

Q ss_pred             CCeEEEEcCccc-cc---CcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------------ccc
Q psy13086         18 KVEFVDVGCGKL-YL---PMFPSTLILGLEIRVKVSDYVIDEWS---------------------------------LYL   60 (169)
Q Consensus        18 ~~~iLDiGCG~G-la---~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------------~~~   60 (169)
                      +.+||=||-|.| .+   .++|..+++.|||++.+++.|++-++                                 ..+
T Consensus       206 pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~y  285 (381)
T 3c6k_A          206 GKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREF  285 (381)
T ss_dssp             TCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCE
T ss_pred             CCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCce
Confidence            478999999999 11   23456799999999999999986321                                 247


Q ss_pred             ceEEEeCCCCccc--ccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         61 KKMFFLYPDPHFK--RCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        61 d~v~~~f~d~~f~--~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      |.|.+..+|+...  .......+...++++.++++|+|||.++.+..
T Consensus       286 DvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~  332 (381)
T 3c6k_A          286 DYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN  332 (381)
T ss_dssp             EEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence            7777765543211  11111233457899999999999999988754

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.94  E-value=3.8e-06  Score=67.06  Aligned_cols=36  Identities=8%  Similarity=-0.014  Sum_probs=30.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCH-------HHHHHHHHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRV-------KVSDYVIDE   55 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~-------~~l~~a~~~   55 (169)
                      +.+|||+|||+|     +|..  ..+|+|+|+|+       .|++.|+++
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n  131 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLN  131 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHS
T ss_pred             cCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhH
Confidence            578999999999     4543  57999999999       999988754

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.92  E-value=0.00027  Score=59.03  Aligned_cols=139  Identities=12%  Similarity=0.071  Sum_probs=80.7

Q ss_pred             CCeEEEEcCccc------ccC---------------cCCCCcEEEEeCCHHHHHHHHHHhc-------------------
Q psy13086         18 KVEFVDVGCGKL------YLP---------------MFPSTLILGLEIRVKVSDYVIDEWS-------------------   57 (169)
Q Consensus        18 ~~~iLDiGCG~G------la~---------------~~p~~~v~GiDis~~~l~~a~~~~~-------------------   57 (169)
                      .-+|+|+||++|      +..               ..|+.+|+.-|+..++...+-+.++                   
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            468999999999      111               3567899999999987776644332                   


Q ss_pred             ------cccceEEEeCCCCcccccc---------------------------hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         58 ------LYLKKMFFLYPDPHFKRCK---------------------------YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        58 ------~~~d~v~~~f~d~~f~~~h---------------------------~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                            +++|.++..+.-.|.....                           ..++  ...||+..++.|+|||++++..
T Consensus       132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D--~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQED--HALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHH--HHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCceEEEEE
Confidence                  5566665544433332100                           0000  1457999999999999999974


Q ss_pred             C---Ch--------HHHHHHH---HHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCC-CeEEEE
Q psy13086        105 D---VK--------DLHDWIV---SHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKG-EKFCAV  162 (169)
Q Consensus       105 d---~~--------~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~-~i~~~~  162 (169)
                      .   ..        ...+.+.   ..+...+.-+....+.  .+.|+  -.++..+|+....++|. .|.++.
T Consensus       210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~--f~~P~--y~ps~~E~~~~ie~~G~F~i~~~e  278 (359)
T 1m6e_X          210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDK--FNIPQ--YTPSPTEVEAEILKEGSFLIDHIE  278 (359)
T ss_dssp             EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGG--GCCCC--BCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred             ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhc--cCCCc--cCCCHHHHHHHHHHcCCceEEEEE
Confidence            1   11        1112122   2223333222211111  13443  45667788888888876 775543

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.92  E-value=4.1e-05  Score=70.06  Aligned_cols=102  Identities=11%  Similarity=0.090  Sum_probs=63.9

Q ss_pred             CCeEEEEcCccc-----ccCcCC---CCcEEEEeCCHHHHHHH--HHHhc--------------------------cccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFP---STLILGLEIRVKVSDYV--IDEWS--------------------------LYLK   61 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p---~~~v~GiDis~~~l~~a--~~~~~--------------------------~~~d   61 (169)
                      +.+|||.|||+|     ++...+   ..+++|+|+++.+++.|  +.++.                          ..+|
T Consensus       322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD  401 (878)
T 3s1s_A          322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS  401 (878)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred             CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence            679999999999     333443   35899999999999998  43321                          1233


Q ss_pred             eEEEeCCCCcccc--------cchhhh----------------cccHHHHHHHHHhccCCcEEEEEeCChHH------HH
Q psy13086         62 KMFFLYPDPHFKR--------CKYKWR----------------IINQNLLSEYAYVLSEGGIVYTITDVKDL------HD  111 (169)
Q Consensus        62 ~v~~~f~d~~f~~--------~h~~~~----------------~~~~~~l~~~~rvLkpGG~l~i~~d~~~~------~~  111 (169)
                      .|..   +|-|..        .....+                -....+++.+.+.|+|||++.++++..-+      ..
T Consensus       402 VVIg---NPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~k  478 (878)
T 3s1s_A          402 VVVM---NPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESK  478 (878)
T ss_dssp             EEEE---CCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHH
T ss_pred             EEEE---CCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHH
Confidence            3332   222210        000000                01346899999999999999998765433      45


Q ss_pred             HHHHHHhcCCC
Q psy13086        112 WIVSHFTEHPL  122 (169)
Q Consensus       112 ~~~~~~~~~~~  122 (169)
                      .+++.+.++..
T Consensus       479 kLRk~LLe~~~  489 (878)
T 3s1s_A          479 AFREFLVGNFG  489 (878)
T ss_dssp             HHHHHHTTTTC
T ss_pred             HHHHHHHhCCC
Confidence            56676665543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.91  E-value=3.7e-07  Score=71.77  Aligned_cols=38  Identities=11%  Similarity=0.206  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      ++.+|||||||+|     ++...  .+++|+|+|+.|++.|++++
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~   71 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKL   71 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTT
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHh
Confidence            3678999999999     44443  79999999999999887765

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.89  E-value=1.1e-05  Score=68.68  Aligned_cols=38  Identities=11%  Similarity=0.006  Sum_probs=32.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.+|||+|||+|     ++..  ..+|+|||+|+.|++.|++|+.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~  136 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIP  136 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHH
Confidence            578999999999     4444  4699999999999999987653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.87  E-value=4.1e-05  Score=69.07  Aligned_cols=22  Identities=14%  Similarity=0.096  Sum_probs=19.5

Q ss_pred             CCcEEEEeCCHHHHHHHHHHhc
Q psy13086         36 STLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        36 ~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +..++|+|+++.|++.|++|+.
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~  277 (703)
T 3v97_A          256 SSHFYGSDSDARVIQRARTNAR  277 (703)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHH
T ss_pred             CccEEEEECCHHHHHHHHHHHH
Confidence            3589999999999999998865

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.85  E-value=2.2e-05  Score=68.78  Aligned_cols=86  Identities=12%  Similarity=0.045  Sum_probs=54.3

Q ss_pred             CCeEEEEcCccc-----ccC----cCC--------------CCcEEEEeCCHHHHHHHHHHhc-----------------
Q psy13086         18 KVEFVDVGCGKL-----YLP----MFP--------------STLILGLEIRVKVSDYVIDEWS-----------------   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~----~~p--------------~~~v~GiDis~~~l~~a~~~~~-----------------   57 (169)
                      +.+|||.+||+|     ++.    ..+              ..+++|+|+++.+++.|+.++.                 
T Consensus       170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g  249 (541)
T 2ar0_A          170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG  249 (541)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred             CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence            568999999999     111    111              2489999999999999986532                 


Q ss_pred             ----------cccceEEEeCCCCcccccchh---hh------cccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         58 ----------LYLKKMFFLYPDPHFKRCKYK---WR------IINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        58 ----------~~~d~v~~~f~d~~f~~~h~~---~~------~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                                ..+|.|..   +|-|......   ..      -....+++.+.+.|||||++.++++.
T Consensus       250 DtL~~~~~~~~~fD~Vv~---NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~  314 (541)
T 2ar0_A          250 NTLGSDGENLPKAHIVAT---NPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  314 (541)
T ss_dssp             CTTSHHHHTSCCEEEEEE---CCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CCcccccccccCCeEEEE---CCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence                      12333322   2222111100   00      00136999999999999999998753

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.85  E-value=0.00015  Score=61.12  Aligned_cols=73  Identities=14%  Similarity=0.023  Sum_probs=38.8

Q ss_pred             HHHHHHHhccCCcEEEEEeC---Ch--H-----HHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcC
Q psy13086         86 LLSEYAYVLSEGGIVYTITD---VK--D-----LHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNK  155 (169)
Q Consensus        86 ~l~~~~rvLkpGG~l~i~~d---~~--~-----~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g  155 (169)
                      ||+..++.|+|||++++.+.   ..  +     ........+...+........  ..+.|+  -.++..+|+....++|
T Consensus       207 FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~d--sf~~P~--y~ps~~E~~~~le~~g  282 (384)
T 2efj_A          207 FLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLD--SFNVPI--YAPSTEEVKRIVEEEG  282 (384)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHH--TCCCSB--CCCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhc--ccCCcc--cCCCHHHHHHHHHHcC
Confidence            47777999999999999852   22  1     333233333333322211111  113343  3455566677677765


Q ss_pred             -CCeEEEE
Q psy13086        156 -GEKFCAV  162 (169)
Q Consensus       156 -~~i~~~~  162 (169)
                       ..|.++.
T Consensus       283 ~F~i~~le  290 (384)
T 2efj_A          283 SFEILYLE  290 (384)
T ss_dssp             SEEEEEEE
T ss_pred             CceEEEEE
Confidence             4665543

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.84  E-value=4.6e-05  Score=64.05  Aligned_cols=21  Identities=19%  Similarity=0.409  Sum_probs=18.1

Q ss_pred             HHHHHHHHHhccCCcEEEEEe
Q psy13086         84 QNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..+|+..++.|+|||+++++.
T Consensus       205 ~~fL~~ra~eL~pGG~mvl~~  225 (374)
T 3b5i_A          205 AEFLRARAAEVKRGGAMFLVC  225 (374)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEEE
Confidence            347888899999999999975

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.75  E-value=1.3e-05  Score=64.89  Aligned_cols=41  Identities=12%  Similarity=0.050  Sum_probs=34.0

Q ss_pred             CCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|||++||+|   ++...-+.+++|+|+++.+++.|++|+.
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~  278 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFA  278 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence            4679999999999   3333345799999999999999999876

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.75  E-value=9.6e-05  Score=61.76  Aligned_cols=88  Identities=11%  Similarity=-0.009  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------------cccceE
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------------LYLKKM   63 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------------~~~d~v   63 (169)
                      ++.+|||+.+|.|     ++...+...++++|+|+.-++.+++++.                            ..+|.|
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~V  227 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRV  227 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEE
Confidence            4679999999999     6666666689999999987776665432                            346666


Q ss_pred             EEeCC--CC-------cccccc-h----hhhc--ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         64 FFLYP--DP-------HFKRCK-Y----KWRI--INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        64 ~~~f~--d~-------~f~~~h-~----~~~~--~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .+.-|  ..       ..+... +    ...+  .+.++|+...+.|||||+|+-+|
T Consensus       228 LlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          228 LVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             EEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            54322  10       000000 0    0001  24578999999999999998775

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.73  E-value=1.3e-05  Score=64.91  Aligned_cols=86  Identities=13%  Similarity=0.018  Sum_probs=50.3

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH------Hh------------c-cccceEEEeCCCCccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID------EW------------S-LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~------~~------------~-~~~d~v~~~f~d~~f~   73 (169)
                      ..+|||||||+|     .+.+.+...++|+|++.++...+..      ++            . ..+|.|...   -.++
T Consensus        91 ~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSD---mApn  167 (282)
T 3gcz_A           91 TGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCD---IGES  167 (282)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEEC---CCCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEec---CccC
Confidence            568999999999     3445566689999998654222211      10            0 334444321   1111


Q ss_pred             -ccchhhhcccHHHHHHHHHhccCC--cEEEEEeCC
Q psy13086         74 -RCKYKWRIINQNLLSEYAYVLSEG--GIVYTITDV  106 (169)
Q Consensus        74 -~~h~~~~~~~~~~l~~~~rvLkpG--G~l~i~~d~  106 (169)
                       ..+.....-.-.+|+-+.++|+||  |.|++..-.
T Consensus       168 sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          168 SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence             111111111124688888999999  999998654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.68  E-value=0.00016  Score=55.81  Aligned_cols=49  Identities=8%  Similarity=0.062  Sum_probs=38.0

Q ss_pred             CCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cc--cceEEEeC
Q psy13086         18 KVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS--LY--LKKMFFLY   67 (169)
Q Consensus        18 ~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~--~~--~d~v~~~f   67 (169)
                      ..+|||||||.-   +|+. ++.+|+.||.+++..+.|++++.  +.  .+.|.+..
T Consensus        31 a~~VLEiGtGySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~   86 (202)
T 3cvo_A           31 AEVILEYGSGGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW   86 (202)
T ss_dssp             CSEEEEESCSHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE
T ss_pred             CCEEEEECchHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE
Confidence            568999999755   6664 47899999999999999998876  22  45565543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.62  E-value=0.00036  Score=61.20  Aligned_cols=104  Identities=13%  Similarity=0.095  Sum_probs=63.2

Q ss_pred             CCeEEEEcCccc--c---cCc---CCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceE
Q psy13086         18 KVEFVDVGCGKL--Y---LPM---FPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKM   63 (169)
Q Consensus        18 ~~~iLDiGCG~G--l---a~~---~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v   63 (169)
                      ..+|||.+||+|  +   +..   .+..+++|+|+++.++..|+.++.                          ..+|.|
T Consensus       222 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~I  301 (542)
T 3lkd_A          222 GFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGV  301 (542)
T ss_dssp             TCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEE
T ss_pred             CCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEE
Confidence            579999999999  1   122   235789999999999999986532                          123433


Q ss_pred             EEe--CCCCcccccc--hhhh------c-----ccHHHHHHHHHhcc-CCcEEEEEeCChHH-----HHHHHHHHhcCC
Q psy13086         64 FFL--YPDPHFKRCK--YKWR------I-----INQNLLSEYAYVLS-EGGIVYTITDVKDL-----HDWIVSHFTEHP  121 (169)
Q Consensus        64 ~~~--f~d~~f~~~h--~~~~------~-----~~~~~l~~~~rvLk-pGG~l~i~~d~~~~-----~~~~~~~~~~~~  121 (169)
                      ..+  |...|-....  ...+      +     ..-.+++.+.+.|| |||++.++++..-+     ...+++.+.++.
T Consensus       302 vaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~  380 (542)
T 3lkd_A          302 LMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEG  380 (542)
T ss_dssp             EECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTT
T ss_pred             EecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhCC
Confidence            322  2111100000  0000      0     01358999999999 99999988765432     344566665554

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.59  E-value=4.2e-05  Score=67.13  Aligned_cols=100  Identities=14%  Similarity=0.102  Sum_probs=61.5

Q ss_pred             CeEEEEcCccc--cc---CcCC---------------CCcEEEEeCCHHHHHHHHHHhc---------------------
Q psy13086         19 VEFVDVGCGKL--YL---PMFP---------------STLILGLEIRVKVSDYVIDEWS---------------------   57 (169)
Q Consensus        19 ~~iLDiGCG~G--la---~~~p---------------~~~v~GiDis~~~l~~a~~~~~---------------------   57 (169)
                      .+|||.+||+|  +.   ....               ..+++|+|+++.+++.|+.++.                     
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            48999999999  11   1111               4589999999999999987642                     


Q ss_pred             --cccceEEEeCCCCcccccchh-------hh------------c-----ccHHHHHHHHHhccCCcEEEEEeCChH---
Q psy13086         58 --LYLKKMFFLYPDPHFKRCKYK-------WR------------I-----INQNLLSEYAYVLSEGGIVYTITDVKD---  108 (169)
Q Consensus        58 --~~~d~v~~~f~d~~f~~~h~~-------~~------------~-----~~~~~l~~~~rvLkpGG~l~i~~d~~~---  108 (169)
                        ..+|.|..   +|-|....+.       .+            +     ..-.+++.+.+.|||||++.++++...   
T Consensus       326 ~~~~fD~Iv~---NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~  402 (544)
T 3khk_A          326 PDLRADFVMT---NPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSS  402 (544)
T ss_dssp             TTCCEEEEEE---CCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHC
T ss_pred             ccccccEEEE---CCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhc
Confidence              22444433   2222211000       00            0     012689999999999999998875432   


Q ss_pred             ---HHHHHHHHHhcCC
Q psy13086        109 ---LHDWIVSHFTEHP  121 (169)
Q Consensus       109 ---~~~~~~~~~~~~~  121 (169)
                         ....+++.+.++.
T Consensus       403 ~~~~~~~iRk~Lle~~  418 (544)
T 3khk_A          403 NTNNEGEIRKTLVEQD  418 (544)
T ss_dssp             CGGGHHHHHHHHHHTT
T ss_pred             CcchHHHHHHHHHhCC
Confidence               2344566665554

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.47  E-value=0.0001  Score=59.97  Aligned_cols=87  Identities=10%  Similarity=-0.004  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHH------HHhc-------------cccceEEEeCCCCcc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVI------DEWS-------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~------~~~~-------------~~~d~v~~~f~d~~f   72 (169)
                      +..+||||||++|     +++..+-..|+|+|++..+.....      .++-             ..+|.|..   |-.+
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVls---D~AP  157 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLC---DIGE  157 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEE---CCCC
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEee---cCcC
Confidence            3689999999999     454445568999999864311110      0100             23444432   2111


Q ss_pred             c-ccchhhhcccHHHHHHHHHhccCC-cEEEEEeCC
Q psy13086         73 K-RCKYKWRIINQNLLSEYAYVLSEG-GIVYTITDV  106 (169)
Q Consensus        73 ~-~~h~~~~~~~~~~l~~~~rvLkpG-G~l~i~~d~  106 (169)
                      + ..+.....-+..+|+-+.++|+|| |.|++..-.
T Consensus       158 nsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          158 SSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            1 111111111234688889999999 999998644

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.40  E-value=9.2e-05  Score=59.15  Aligned_cols=32  Identities=19%  Similarity=0.133  Sum_probs=26.0

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHH
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYV   52 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a   52 (169)
                      .+|||+|||+|     +|.+  +.+|+|||+++.+++.+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~  126 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALL  126 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHH
T ss_pred             CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHH
Confidence            78999999999     5555  56899999999765444

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.31  E-value=8.7e-05  Score=66.95  Aligned_cols=38  Identities=11%  Similarity=-0.122  Sum_probs=27.0

Q ss_pred             CCeEEEEcCccc-c------cCc--C---------CCCcEEEEeCCHHHHHHHHHH
Q psy13086         18 KVEFVDVGCGKL-Y------LPM--F---------PSTLILGLEIRVKVSDYVIDE   55 (169)
Q Consensus        18 ~~~iLDiGCG~G-l------a~~--~---------p~~~v~GiDis~~~l~~a~~~   55 (169)
                      ...|||||||+| |      |..  .         ...+|++||.|+.++..++.+
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~  465 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYM  465 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHH
Confidence            468999999999 3      111  1         234999999999777655543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.28  E-value=0.00021  Score=63.89  Aligned_cols=38  Identities=11%  Similarity=0.168  Sum_probs=25.6

Q ss_pred             CCeEEEEcCccc-c------c-Cc-CCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL-Y------L-PM-FPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G-l------a-~~-~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      ...|||||||+| |      | ++ ....+|++||.|+ |...|++.+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v  404 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENW  404 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHH
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHH
Confidence            357999999999 2      1 11 1224789999997 555665543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.97  E-value=0.00045  Score=54.65  Aligned_cols=42  Identities=7%  Similarity=-0.037  Sum_probs=34.3

Q ss_pred             CCCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         16 EKKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        16 ~~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++..|||..||+|   ++...-+.+++|+|+++.+++.|++|+.
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~  255 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence            45789999999999   3333336799999999999999998864

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.85  E-value=0.0013  Score=53.11  Aligned_cols=28  Identities=7%  Similarity=0.026  Sum_probs=21.9

Q ss_pred             CCeEEEEcCccc-----ccCcC-----CCCcEEEEeCC
Q psy13086         18 KVEFVDVGCGKL-----YLPMF-----PSTLILGLEIR   45 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~-----p~~~v~GiDis   45 (169)
                      ...|||+||.+|     ++...     ++.+++++|..
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dtf  144 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSF  144 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECS
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECC
Confidence            578999999999     33322     57899999975

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=96.83  E-value=0.00081  Score=54.47  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=30.8

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID   54 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~   54 (169)
                      +..+||.+||.|     ++++  +..|+|+|.++.+++.|++
T Consensus        23 gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~   62 (285)
T 1wg8_A           23 GGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG   62 (285)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh
Confidence            679999999999     4444  6799999999999999986

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=96.79  E-value=0.0002  Score=52.83  Aligned_cols=53  Identities=15%  Similarity=0.223  Sum_probs=34.8

Q ss_pred             CCeEEEEcCccc--ccCc---CCCCcEEEEeCCHHHHHHHHHHhc-------cccceEEEeCCCC
Q psy13086         18 KVEFVDVGCGKL--YLPM---FPSTLILGLEIRVKVSDYVIDEWS-------LYLKKMFFLYPDP   70 (169)
Q Consensus        18 ~~~iLDiGCG~G--la~~---~p~~~v~GiDis~~~l~~a~~~~~-------~~~d~v~~~f~d~   70 (169)
                      ..+|||||||.|  .|..   ..+..|+++|+++..++..+..+-       ..+|.|+..-|.+
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~~v~dDiF~P~~~~Y~~~DLIYsirPP~  100 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYSIRPPA  100 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTTEECCCSSSCCHHHHTTEEEEEEESCCT
T ss_pred             CCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccceEEccCCCCcccccCCcCEEEEcCCCH
Confidence            469999999999  3322   256789999999987762222211       3667765544444

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.38  E-value=0.0088  Score=48.90  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=18.8

Q ss_pred             cccHHHHHHHHHhccCCcEEEE
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                      +-.+++++.++++++|||+|.-
T Consensus       203 LWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          203 LWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             GGSHHHHHHHHTTEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHhCCCcEEEE
Confidence            3458999999999999999863

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.24  E-value=0.0039  Score=50.83  Aligned_cols=86  Identities=9%  Similarity=-0.029  Sum_probs=47.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHH------HHHHHHHHh------------c-cccceEEEeCC--CCc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVK------VSDYVIDEW------------S-LYLKKMFFLYP--DPH   71 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~------~l~~a~~~~------------~-~~~d~v~~~f~--d~~   71 (169)
                      ...||||||++|     .+....-..|+|+|+-..      |++..--++            + ..+|.+.....  +|.
T Consensus        95 ~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D~ivcDigeSs~~  174 (321)
T 3lkz_A           95 VGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCDTLLCDIGESSSS  174 (321)
T ss_dssp             CEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCSEEEECCCCCCSC
T ss_pred             CCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCCEEEEECccCCCC
Confidence            569999999999     334444457999999865      111100011            0 23444433221  111


Q ss_pred             ccccchhhhcccHHHHHHHHHhccCC-cEEEEEeCCh
Q psy13086         72 FKRCKYKWRIINQNLLSEYAYVLSEG-GIVYTITDVK  107 (169)
Q Consensus        72 f~~~h~~~~~~~~~~l~~~~rvLkpG-G~l~i~~d~~  107 (169)
                      ... ...|.   -.+|+-+.+.|++| |.|++..-.+
T Consensus       175 ~~v-e~~Rt---l~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          175 AEV-EEHRT---IRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             HHH-HHHHH---HHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             hhh-hhhHH---HHHHHHHHHHhccCCCcEEEEEcCC
Confidence            110 01111   23778888999999 9999886554

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.65  E-value=0.063  Score=46.73  Aligned_cols=38  Identities=18%  Similarity=0.152  Sum_probs=29.1

Q ss_pred             CCeEEEEcCccc--cc-------CcC---------CCCcEEEEeCCHHHHHHHHHH
Q psy13086         18 KVEFVDVGCGKL--YL-------PMF---------PSTLILGLEIRVKVSDYVIDE   55 (169)
Q Consensus        18 ~~~iLDiGCG~G--la-------~~~---------p~~~v~GiDis~~~l~~a~~~   55 (169)
                      +.+|+|-.||||  |.       ...         ...+++|+|+++.++..|+-+
T Consensus       218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN  273 (530)
T 3ufb_A          218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN  273 (530)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred             CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence            568999999999  21       111         135799999999999988754

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=95.04  E-value=0.055  Score=43.21  Aligned_cols=22  Identities=18%  Similarity=0.006  Sum_probs=17.8

Q ss_pred             HHHHHHHhccCCc-EEEEEeCCh
Q psy13086         86 LLSEYAYVLSEGG-IVYTITDVK  107 (169)
Q Consensus        86 ~l~~~~rvLkpGG-~l~i~~d~~  107 (169)
                      +|+-+.++|+||| .|++..-.+
T Consensus       164 aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          164 ILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             HHHHHHHHHTTCCSEEEEEESCT
T ss_pred             HHHHHHHHhhcCCcEEEEEECCC
Confidence            6777789999999 898876443

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=94.81  E-value=0.08  Score=46.92  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=19.8

Q ss_pred             cccHHHHHHHHHhccCCcEEEEEe
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +-..++++.++++++|||++.--+
T Consensus       196 ~w~~~~~~~l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          196 MWTQNLFNAMARLARPGGTLATFT  219 (676)
T ss_dssp             GSCHHHHHHHHHHEEEEEEEEESC
T ss_pred             hhhHHHHHHHHHHhCCCCEEEecc
Confidence            345889999999999999987544

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=94.53  E-value=0.034  Score=46.79  Aligned_cols=41  Identities=10%  Similarity=-0.028  Sum_probs=33.4

Q ss_pred             CCCeEEEEcCccc-----cc-CcCCC-CcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YL-PMFPS-TLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la-~~~p~-~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++..++|||++.|     ++ ...+. .+|+++|+++...+..++++.
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~  273 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR  273 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence            4789999999999     34 44554 799999999999988877654

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=94.45  E-value=0.074  Score=39.46  Aligned_cols=79  Identities=11%  Similarity=0.051  Sum_probs=47.6

Q ss_pred             CeEEEEcCccc-----ccCcCCCCcEEEEeCCH-------------------HHHHHHHHHhccccceEEEeCCCCcccc
Q psy13086         19 VEFVDVGCGKL-----YLPMFPSTLILGLEIRV-------------------KVSDYVIDEWSLYLKKMFFLYPDPHFKR   74 (169)
Q Consensus        19 ~~iLDiGCG~G-----la~~~p~~~v~GiDis~-------------------~~l~~a~~~~~~~~d~v~~~f~d~~f~~   74 (169)
                      .-|||+|-|+|     |.+.+|+..++.+|-..                   +++..|..++......++..+-....+ 
T Consensus        42 GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g~~~-  120 (174)
T 3iht_A           42 GPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGATASLVHADLGGHNRE-  120 (174)
T ss_dssp             SCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCSCEEEEEECCCCSCHH-
T ss_pred             CceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhcCCceEEEEeecCCCCcc-
Confidence            45999999999     88889999999999643                   244545455544444444332211100 


Q ss_pred             cchhhhcccHHHHHHHHHhccCCcEEE
Q psy13086         75 CKYKWRIINQNLLSEYAYVLSEGGIVY  101 (169)
Q Consensus        75 ~h~~~~~~~~~~l~~~~rvLkpGG~l~  101 (169)
                         +.......+-..+..+|.|||.++
T Consensus       121 ---~d~a~a~~lsplI~~~la~GGi~v  144 (174)
T 3iht_A          121 ---KNDRFARLISPLIEPHLAQGGLMV  144 (174)
T ss_dssp             ---HHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             ---hhHHHHHhhhHHHHHHhcCCcEEE
Confidence               000011234455678999999875

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=94.40  E-value=0.044  Score=45.42  Aligned_cols=36  Identities=11%  Similarity=0.055  Sum_probs=31.3

Q ss_pred             CCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHH
Q psy13086         18 KVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVI   53 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~   53 (169)
                      +..+||..||.|     +++. .|+..|+|+|.++.+++.|+
T Consensus        58 ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           58 DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            678999999999     5555 47789999999999999884

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=94.38  E-value=0.029  Score=46.57  Aligned_cols=39  Identities=13%  Similarity=0.177  Sum_probs=31.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      +..|||||.|.|     |+.+....++++||++..++...++..
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence            578999999999     443323358999999999998887754

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=94.25  E-value=0.058  Score=44.13  Aligned_cols=87  Identities=16%  Similarity=0.113  Sum_probs=49.4

Q ss_pred             CCeEEEEcC------ccc---ccCcCCC-CcEEEEeCCHHHHHHHHHHhc---------cccceEEEeCCCCcccccch-
Q psy13086         18 KVEFVDVGC------GKL---YLPMFPS-TLILGLEIRVKVSDYVIDEWS---------LYLKKMFFLYPDPHFKRCKY-   77 (169)
Q Consensus        18 ~~~iLDiGC------G~G---la~~~p~-~~v~GiDis~~~l~~a~~~~~---------~~~d~v~~~f~d~~f~~~h~-   77 (169)
                      +.+|||+|+      -.|   +.+..|. +.++++|+.+-... +..-+.         ..+|.|...-.++.-..... 
T Consensus       110 gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~sd-a~~~IqGD~~~~~~~~k~DLVISDMAPNtTG~~D~d  188 (344)
T 3r24_A          110 NMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSD-ADSTLIGDCATVHTANKWDLIISDMYDPRTKHVTKE  188 (344)
T ss_dssp             TCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCS-SSEEEESCGGGEEESSCEEEEEECCCCTTSCSSCSC
T ss_pred             CCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccccC-CCeEEEccccccccCCCCCEEEecCCCCcCCccccc
Confidence            579999996      445   5556676 69999999872210 000011         33554443221111111100 


Q ss_pred             h-hhc-ccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         78 K-WRI-INQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        78 ~-~~~-~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      . +.+ ..+.+++-+.++|+|||.|++...
T Consensus       189 ~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF  218 (344)
T 3r24_A          189 NDSKEGFFTYLCGFIKQKLALGGSIAVKIT  218 (344)
T ss_dssp             CCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence            0 111 246778888899999999999853

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.10  E-value=0.027  Score=45.80  Aligned_cols=42  Identities=14%  Similarity=0.038  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         16 EKKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        16 ~~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++..|||-=||+|   ++...-+.+++|+|+++.+++.|++|+.
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~  295 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFL  295 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            45789999999999   3333346799999999999999999875

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=93.33  E-value=0.036  Score=43.99  Aligned_cols=30  Identities=20%  Similarity=0.287  Sum_probs=23.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVK   47 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~   47 (169)
                      ...||||||++|     .+.......|+|+|+-..
T Consensus        79 g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~  113 (267)
T 3p8z_A           79 EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGP  113 (267)
T ss_dssp             CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCST
T ss_pred             CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCC
Confidence            569999999999     344444458999999753

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=92.98  E-value=0.15  Score=45.44  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=19.0

Q ss_pred             ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      -...+++.++++++|||++.--+
T Consensus       189 w~~~~~~~l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          189 WNEQLFNAMARMTRPGGTFSTFT  211 (689)
T ss_dssp             CSHHHHHHHHHHEEEEEEEEESC
T ss_pred             hhHHHHHHHHHHhCCCCEEEecc
Confidence            35789999999999999986433

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=92.45  E-value=0.059  Score=45.11  Aligned_cols=28  Identities=11%  Similarity=0.076  Sum_probs=22.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCH
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRV   46 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~   46 (169)
                      ++.++||+||.+|     ++++  +..|+|||+.+
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~  243 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGP  243 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhh
Confidence            3689999999999     4444  57999999864

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=92.24  E-value=0.22  Score=40.69  Aligned_cols=82  Identities=12%  Similarity=0.062  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCcc-c-----ccCcCCCC-cEEEEeCCHHHHHHHHHHhccccceEEEeCCCCccc-ccch----hhhc---
Q psy13086         17 KKVEFVDVGCGK-L-----YLPMFPST-LILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFK-RCKY----KWRI---   81 (169)
Q Consensus        17 ~~~~iLDiGCG~-G-----la~~~p~~-~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~-~~h~----~~~~---   81 (169)
                      ++.+||-+|||. |     +|+.. ++ .|+++|.++.-++.|++.-   .|.+ +.+.++.+. ....    .-++   
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~lG---a~~v-i~~~~~~~~~~~~~~~~gg~D~vid  264 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLG---ATHV-INSKTQDPVAAIKEITDGGVNFALE  264 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHHT---CSEE-EETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcC---CCEE-ecCCccCHHHHHHHhcCCCCcEEEE
Confidence            468899999875 4     44443 44 6999999999888886531   2222 122221110 0000    0000   


Q ss_pred             -c-cHHHHHHHHHhccCCcEEEEE
Q psy13086         82 -I-NQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        82 -~-~~~~l~~~~rvLkpGG~l~i~  103 (169)
                       + ....++...+.|++||++++.
T Consensus       265 ~~g~~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          265 STGSPEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             CSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCHHHHHHHHHHHhcCCEEEEe
Confidence             1 256889999999999999875

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=91.78  E-value=0.069  Score=43.48  Aligned_cols=42  Identities=5%  Similarity=-0.077  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcCccc---ccCcCCCCcEEEEeCCH---HHHHHHHHHhc
Q psy13086         16 EKKVEFVDVGCGKL---YLPMFPSTLILGLEIRV---KVSDYVIDEWS   57 (169)
Q Consensus        16 ~~~~~iLDiGCG~G---la~~~p~~~v~GiDis~---~~l~~a~~~~~   57 (169)
                      .++..|||-=||+|   +|...-+.+++|+|+++   .+++.|++|+.
T Consensus       241 ~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~  288 (319)
T 1eg2_A          241 HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQ  288 (319)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHH
Confidence            45789999999999   33333367999999999   99999999986

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=90.44  E-value=0.53  Score=37.79  Aligned_cols=82  Identities=11%  Similarity=-0.015  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCccccc-c-------h-hhhc
Q psy13086         17 KKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRC-K-------Y-KWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~-h-------~-~~~~   81 (169)
                      ++.+||-+|+|. |     +++.. +++|+++|.|+.-++.+++-   ..|.+ +.+.++.+... .       . ....
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l---Ga~~~-i~~~~~~~~~~~~~~~g~~d~vid~~  240 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRL---GAEVA-VNARDTDPAAWLQKEIGGAHGVLVTA  240 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT---TCSEE-EETTTSCHHHHHHHHHSSEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHc---CCCEE-EeCCCcCHHHHHHHhCCCCCEEEEeC
Confidence            467888899864 4     45544 56999999999988887652   12222 12222111000 0       0 0000


Q ss_pred             ccHHHHHHHHHhccCCcEEEEE
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .....++...+.|+|||++++.
T Consensus       241 g~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          241 VSPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHhccCCEEEEe
Confidence            1367899999999999999875

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=90.41  E-value=0.62  Score=37.62  Aligned_cols=73  Identities=10%  Similarity=0.074  Sum_probs=47.5

Q ss_pred             CCCCeEEEEcCcc-c-----ccCcCCCC-cEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeC
Q psy13086         16 EKKVEFVDVGCGK-L-----YLPMFPST-LILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLY   67 (169)
Q Consensus        16 ~~~~~iLDiGCG~-G-----la~~~p~~-~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f   67 (169)
                      .++.+||=+|+|. |     +|+.. ++ +|+++|.+++-++.+++--.                     ..+|.+.-..
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~  243 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAG  243 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECC
Confidence            3467899999864 3     44443 45 89999999988887765210                     0122221110


Q ss_pred             CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .              .+..++...+.|+|||++++.
T Consensus       244 g--------------~~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          244 G--------------DVHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             S--------------CTTHHHHHHHHEEEEEEEEEC
T ss_pred             C--------------ChHHHHHHHHHHhcCCEEEEe
Confidence            0              135788999999999999865

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=89.47  E-value=0.62  Score=37.88  Aligned_cols=57  Identities=11%  Similarity=0.013  Sum_probs=39.2

Q ss_pred             CCCeEEEEcCccc---ccCcCCCC-cEEEEeCCHHHHHHHHHHhc---------------cccceEEEeCCCCccc
Q psy13086         17 KKVEFVDVGCGKL---YLPMFPST-LILGLEIRVKVSDYVIDEWS---------------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        17 ~~~~iLDiGCG~G---la~~~p~~-~v~GiDis~~~l~~a~~~~~---------------~~~d~v~~~f~d~~f~   73 (169)
                      +..++||+-||.|   ++-...+. .+.++|+++.+++..+.|.+               ..+|.+..-+|=..|.
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~~~Di~~~~~~~~~~~D~l~~gpPCQ~fS   85 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFPCQAFS   85 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTC
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCCcCCHHHcCHhhCCCCCEEEECCCCCCcc
Confidence            3578999999999   22222233 58889999999998887753               2466666655544444

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=89.18  E-value=1.3  Score=35.83  Aligned_cols=82  Identities=7%  Similarity=0.077  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCcc-c-----ccCcCCCC-cEEEEeCCHHHHHHHHHHhccccceEEEeCC--C-Ccc-cccch----hhhc
Q psy13086         17 KKVEFVDVGCGK-L-----YLPMFPST-LILGLEIRVKVSDYVIDEWSLYLKKMFFLYP--D-PHF-KRCKY----KWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~-G-----la~~~p~~-~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~--d-~~f-~~~h~----~~~~   81 (169)
                      ++.+||-+|+|. |     +|+.. ++ +|+++|.++.-++.+++-   ..|.+ +.+.  + ..+ +....    .-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l---Ga~~v-i~~~~~~~~~~~~~i~~~~~~g~D~  245 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEI---GADLV-LQISKESPQEIARKVEGQLGCKPEV  245 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT---TCSEE-EECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh---CCCEE-EcCcccccchHHHHHHHHhCCCCCE
Confidence            467899999864 4     55554 45 899999999888877642   12222 1222  0 100 00000    0001


Q ss_pred             ----c-cHHHHHHHHHhccCCcEEEEE
Q psy13086         82 ----I-NQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        82 ----~-~~~~l~~~~rvLkpGG~l~i~  103 (169)
                          + .+..++...+.|+|||++++.
T Consensus       246 vid~~g~~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          246 TIECTGAEASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             EEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCCChHHHHHHHHHhcCCCEEEEE
Confidence                1 256788999999999999875

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=89.14  E-value=0.77  Score=36.79  Aligned_cols=83  Identities=11%  Similarity=-0.026  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCccccc-----------chhh
Q psy13086         17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRC-----------KYKW   79 (169)
Q Consensus        17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~-----------h~~~   79 (169)
                      ++.+||=+|+|.+      +++.....+|+++|.+++-++.+++--   .|.+ +.+.++.+...           ....
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~G---a~~~-i~~~~~~~~~~v~~~t~g~g~d~~~~  238 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIG---ADVT-INSGDVNPVDEIKKITGGLGVQSAIV  238 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTT---CSEE-EEC-CCCHHHHHHHHTTSSCEEEEEE
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcC---CeEE-EeCCCCCHHHHhhhhcCCCCceEEEE
Confidence            3678888999876      444455789999999998777776531   1111 12222111000           0000


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEE
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .......+....+.|+++|++.+.
T Consensus       239 ~~~~~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          239 CAVARIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             CCSCHHHHHHHHHTEEEEEEEEEC
T ss_pred             eccCcchhheeheeecCCceEEEE
Confidence            012367889999999999999875

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=88.29  E-value=0.47  Score=38.77  Aligned_cols=40  Identities=3%  Similarity=0.058  Sum_probs=29.9

Q ss_pred             CCeEEEEcCccc---ccCcCCC---CcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL---YLPMFPS---TLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G---la~~~p~---~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ..++||+-||.|   ++....+   ..+.++|+++.+++..+.|.+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~   47 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP   47 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc
Confidence            457999999999   2222122   369999999999999887753

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=88.15  E-value=0.74  Score=37.01  Aligned_cols=83  Identities=8%  Similarity=0.012  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccccc-h----hhhc----
Q psy13086         17 KKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCK-Y----KWRI----   81 (169)
Q Consensus        17 ~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~h-~----~~~~----   81 (169)
                      ++.+||=+|+|. |     +++.....+|+++|.++.-++.+++-   ..|.+ +.+.+.+.+... .    .-++    
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l---Ga~~~-i~~~~~~~~~v~~~t~g~g~d~v~d~  246 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV---GADAA-VKSGAGAADAIRELTGGQGATAVFDF  246 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT---TCSEE-EECSTTHHHHHHHHHGGGCEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc---CCCEE-EcCCCcHHHHHHHHhCCCCCeEEEEC
Confidence            468899999854 3     55555567999999999888887652   12222 112111111000 0    0000    


Q ss_pred             -ccHHHHHHHHHhccCCcEEEEE
Q psy13086         82 -INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        82 -~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                       -.+..++...+.|++||++++.
T Consensus       247 ~G~~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          247 VGAQSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             SCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHHhcCCEEEEE
Confidence             1245899999999999999875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=87.69  E-value=4.5  Score=27.92  Aligned_cols=83  Identities=11%  Similarity=-0.004  Sum_probs=49.9

Q ss_pred             CCeEEEEcCcc-c--ccCcC--CCCcEEEEeCCHHHHHHHHHH-hc-----------------cccceEEEeCCCCcccc
Q psy13086         18 KVEFVDVGCGK-L--YLPMF--PSTLILGLEIRVKVSDYVIDE-WS-----------------LYLKKMFFLYPDPHFKR   74 (169)
Q Consensus        18 ~~~iLDiGCG~-G--la~~~--p~~~v~GiDis~~~l~~a~~~-~~-----------------~~~d~v~~~f~d~~f~~   74 (169)
                      ..+|+=+|||. |  +++..  .+..|+++|.+++.++.+++. +.                 ...|.+.+..+++.   
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~---   83 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGY---   83 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHH---
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChH---
Confidence            45788899986 4  44332  357999999999988877642 10                 23333333333321   


Q ss_pred             cchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHH
Q psy13086         75 CKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHD  111 (169)
Q Consensus        75 ~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~  111 (169)
                              ....+-...+.+.|+..++.....+.+.+
T Consensus        84 --------~n~~~~~~a~~~~~~~~iiar~~~~~~~~  112 (140)
T 3fwz_A           84 --------EAGEIVASARAKNPDIEIIARAHYDDEVA  112 (140)
T ss_dssp             --------HHHHHHHHHHHHCSSSEEEEEESSHHHHH
T ss_pred             --------HHHHHHHHHHHHCCCCeEEEEECCHHHHH
Confidence                    01234445677778888777666666554

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=87.04  E-value=0.65  Score=34.06  Aligned_cols=83  Identities=7%  Similarity=-0.072  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccc-c-c-----hhhhc-
Q psy13086         17 KKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKR-C-K-----YKWRI-   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~-~-h-----~~~~~-   81 (169)
                      ++.+||.+|++.|       ++.. .+++|+++|.+++.++.+++. .  .+.+ +.+.++.+.. . .     ...-+ 
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~-~G~~V~~~~~~~~~~~~~~~~-g--~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi  112 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKM-IGARIYTTAGSDAKREMLSRL-G--VEYV-GDSRSVDFADEILELTDGYGVDVVL  112 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHTT-C--CSEE-EETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHc-C--CCEE-eeCCcHHHHHHHHHHhCCCCCeEEE
Confidence            4688999997555       2222 357899999999877766531 1  1211 1222211100 0 0     00000 


Q ss_pred             --ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         82 --INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        82 --~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        .....++...+.|+|||++++..
T Consensus       113 ~~~g~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          113 NSLAGEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             ECCCTHHHHHHHHTEEEEEEEEECS
T ss_pred             ECCchHHHHHHHHHhccCCEEEEEc
Confidence              12467888999999999998754

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=86.94  E-value=0.25  Score=50.38  Aligned_cols=84  Identities=14%  Similarity=0.025  Sum_probs=35.7

Q ss_pred             CCeEEEEcCccc-ccCc-------CC--CCcEEEEeCCHHHHHHHHHHhccccceEE--E------eCCCCcccc-----
Q psy13086         18 KVEFVDVGCGKL-YLPM-------FP--STLILGLEIRVKVSDYVIDEWSLYLKKMF--F------LYPDPHFKR-----   74 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~~-------~p--~~~v~GiDis~~~l~~a~~~~~~~~d~v~--~------~f~d~~f~~-----   74 (169)
                      ..+|||||.||| +...       .|  ..+++-.|+|+...+.|+++++ .+|.-.  +      .|....+|.     
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~-~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLE-QLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHH-HHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhh-hcccccccccccccccCCCCceeEEEEcc
Confidence            468999999999 2111       12  2368888999887777766543 111110  0      000111121     


Q ss_pred             -cchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         75 -CKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        75 -~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       .|....  ....+++++++|||||.+++..
T Consensus      1320 vl~~t~~--~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1320 ALATLGD--PAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             C----------------------CCEEEEEE
T ss_pred             ccccccc--HHHHHHHHHHhcCCCcEEEEEe
Confidence             122211  2468999999999999998864

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=86.92  E-value=2.3  Score=34.32  Aligned_cols=83  Identities=8%  Similarity=0.012  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCcc-c-----ccCcCCCC-cEEEEeCCHHHHHHHHHHhccccceEEEeCCC---Cccc-ccc-h----hhh
Q psy13086         17 KKVEFVDVGCGK-L-----YLPMFPST-LILGLEIRVKVSDYVIDEWSLYLKKMFFLYPD---PHFK-RCK-Y----KWR   80 (169)
Q Consensus        17 ~~~~iLDiGCG~-G-----la~~~p~~-~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d---~~f~-~~h-~----~~~   80 (169)
                      ++.+||=+|+|. |     +|+.. ++ .|+++|.|+.-++.|++-....++   ....+   ..+. ... .    .-.
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l~~~~~~---~~~~~~~~~~~~~~v~~~t~g~g~D  254 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEICPEVVT---HKVERLSAEESAKKIVESFGGIEPA  254 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHHCTTCEE---EECCSCCHHHHHHHHHHHTSSCCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhchhccc---ccccccchHHHHHHHHHHhCCCCCC
Confidence            467888899853 3     55554 45 499999999988888764211111   11100   0000 000 0    000


Q ss_pred             c-----ccHHHHHHHHHhccCCcEEEEE
Q psy13086         81 I-----INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        81 ~-----~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      +     -.+..++...+.|++||++++.
T Consensus       255 vvid~~g~~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          255 VALECTGVESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             EEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEEECCCChHHHHHHHHHhcCCCEEEEE
Confidence            0     1245889999999999999875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=86.02  E-value=0.73  Score=37.14  Aligned_cols=83  Identities=17%  Similarity=0.167  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCccc----cc---chhhhcc
Q psy13086         17 KKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFK----RC---KYKWRII   82 (169)
Q Consensus        17 ~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~----~~---h~~~~~~   82 (169)
                      ++.+||-+|+|.|       ++....+++|+++|.++..++.+++- .  .+.+ +.+.++.+.    ..   ....-++
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~-g--~~~~-~~~~~~~~~~~~~~~~~~~~~d~vi  245 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-G--ADYV-INASMQDPLAEIRRITESKGVDAVI  245 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-T--CSEE-EETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-C--CCEE-ecCCCccHHHHHHHHhcCCCceEEE
Confidence            4688999999877       33333367999999999888877542 1  2221 122222110    00   0000000


Q ss_pred             ----cHHHHHHHHHhccCCcEEEEE
Q psy13086         83 ----NQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        83 ----~~~~l~~~~rvLkpGG~l~i~  103 (169)
                          ....++...+.|+|+|++++.
T Consensus       246 ~~~g~~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          246 DLNNSEKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             ESCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred             ECCCCHHHHHHHHHHHhcCCEEEEE
Confidence                245888899999999999875

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=83.78  E-value=1.2  Score=36.48  Aligned_cols=83  Identities=7%  Similarity=0.073  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcc-cccchhhhc----c-cH
Q psy13086         17 KKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHF-KRCKYKWRI----I-NQ   84 (169)
Q Consensus        17 ~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f-~~~h~~~~~----~-~~   84 (169)
                      ++.+||-+|+|. |     +|+.. +++|+++|.|+.-++.+++ +.  .|.+ +.+.++.+ ......-++    + .+
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~-lG--a~~v-i~~~~~~~~~~~~~g~Dvvid~~g~~  268 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA-LG--ADEV-VNSRNADEMAAHLKSFDFILNTVAAP  268 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH-HT--CSEE-EETTCHHHHHTTTTCEEEEEECCSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cC--CcEE-eccccHHHHHHhhcCCCEEEECCCCH
Confidence            468899999864 4     44443 5689999999988887765 21  1221 11111100 000000000    0 12


Q ss_pred             HHHHHHHHhccCCcEEEEEe
Q psy13086         85 NLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..++...+.|+|||++++..
T Consensus       269 ~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          269 HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             CCHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHHHHHhccCCEEEEec
Confidence            35778889999999998753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=83.66  E-value=1.9  Score=34.33  Aligned_cols=85  Identities=7%  Similarity=0.107  Sum_probs=50.5

Q ss_pred             CCCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCccccc---------chhh
Q psy13086         16 EKKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRC---------KYKW   79 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~---------h~~~   79 (169)
                      .++.+||-+|++.|       +++. -+++|+++|.++.-++.+.+.+.  .+.+ +.+.++.+...         ...-
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~-~Ga~Vi~~~~~~~~~~~~~~~~g--~~~~-~~~~~~~~~~~~~~~~~~~~d~vi  223 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARL-KGCRVVGIAGGAEKCRFLVEELG--FDGA-IDYKNEDLAAGLKRECPKGIDVFF  223 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHTTC--CSEE-EETTTSCHHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHcC--CCEE-EECCCHHHHHHHHHhcCCCceEEE
Confidence            44789999999655       3343 35699999999988877744332  1221 12222111100         0000


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      .......++...+.|++||++++..
T Consensus       224 ~~~g~~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          224 DNVGGEILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             ESSCHHHHHHHHTTEEEEEEEEECC
T ss_pred             ECCCcchHHHHHHHHhhCCEEEEEe
Confidence            0012457889999999999998753

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=83.51  E-value=1.1  Score=35.91  Aligned_cols=38  Identities=8%  Similarity=0.190  Sum_probs=29.1

Q ss_pred             CCCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086         16 EKKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVID   54 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~   54 (169)
                      .++.+||-+|+|+|       +++. -+++|+++|.++.-++.+++
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~-~Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQI-LNFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEESSSTTHHHHHH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHh
Confidence            44789999999876       3333 35799999999887777765

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=83.36  E-value=3.7  Score=32.65  Aligned_cols=84  Identities=5%  Similarity=-0.042  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccc-cch---------h-h
Q psy13086         17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKR-CKY---------K-W   79 (169)
Q Consensus        17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~-~h~---------~-~   79 (169)
                      ++.+||=+|+|..      +++......++++|.+++-++.|++-   ..|.+ +.+.+..+.. ...         . .
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l---Ga~~~-i~~~~~~~~~~~~~~~~~~g~d~v~d  235 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF---GAMQT-FNSSEMSAPQMQSVLRELRFNQLILE  235 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---TCSEE-EETTTSCHHHHHHHHGGGCSSEEEEE
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc---CCeEE-EeCCCCCHHHHHHhhcccCCcccccc
Confidence            4678999998765      55555445789999999888877652   11211 1222211110 000         0 0


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..-.+..++...+.|++||++.+..
T Consensus       236 ~~G~~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          236 TAGVPQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             CSCSHHHHHHHHHHCCTTCEEEECC
T ss_pred             cccccchhhhhhheecCCeEEEEEe
Confidence            0013678999999999999998753

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=83.17  E-value=2.5  Score=33.84  Aligned_cols=81  Identities=12%  Similarity=0.117  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCcc-c-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCC-C----------cccccchh
Q psy13086         17 KKVEFVDVGCGK-L-----YLPM-FPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPD-P----------HFKRCKYK   78 (169)
Q Consensus        17 ~~~~iLDiGCG~-G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d-~----------~f~~~h~~   78 (169)
                      ++.+||-+|+|. |     +|+. +|+++|+++|.|+.-++.+++- .  .|.+. .+.+ +          -+|..  .
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l-G--a~~vi-~~~~~~~~~~~~~~g~g~D~v--i  243 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL-G--ADYVS-EMKDAESLINKLTDGLGASIA--I  243 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-T--CSEEE-CHHHHHHHHHHHHTTCCEEEE--E
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh-C--CCEEe-ccccchHHHHHhhcCCCccEE--E
Confidence            368899999953 2     4443 3578999999999888777642 1  11111 1100 0          00000  0


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ...-.+..++...+.|+|||++++.
T Consensus       244 d~~g~~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          244 DLVGTEETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             ESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             ECCCChHHHHHHHHHhhcCCEEEEe
Confidence            0001245889999999999999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=81.91  E-value=3.8  Score=33.17  Aligned_cols=82  Identities=9%  Similarity=-0.010  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCcc-c-----ccCcCCCC-cEEEEeCCHHHHHHHHHHhccccceEEEeCCC--Ccccc-cch----hhhc-
Q psy13086         17 KKVEFVDVGCGK-L-----YLPMFPST-LILGLEIRVKVSDYVIDEWSLYLKKMFFLYPD--PHFKR-CKY----KWRI-   81 (169)
Q Consensus        17 ~~~~iLDiGCG~-G-----la~~~p~~-~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d--~~f~~-~h~----~~~~-   81 (169)
                      ++.+||-+|+|. |     +|+.. ++ .|+++|.|+.-++.+++-   ..|.+ +.+.+  ..+.. ...    .-++ 
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~l---Ga~~v-i~~~~~~~~~~~~~~~~~~~g~D~v  266 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVF---GATDF-VNPNDHSEPISQVLSKMTNGGVDFS  266 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT---TCCEE-ECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh---CCceE-EeccccchhHHHHHHHHhCCCCCEE
Confidence            467899999753 3     45554 45 899999999888877642   12222 12221  11100 000    0000 


Q ss_pred             ---c-cHHHHHHHHHhccCC-cEEEEE
Q psy13086         82 ---I-NQNLLSEYAYVLSEG-GIVYTI  103 (169)
Q Consensus        82 ---~-~~~~l~~~~rvLkpG-G~l~i~  103 (169)
                         + ....++...+.|++| |++++.
T Consensus       267 id~~g~~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          267 LECVGNVGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             EECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EECCCCHHHHHHHHHHhhcCCcEEEEE
Confidence               1 256889999999999 999875

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=81.91  E-value=2.8  Score=33.33  Aligned_cols=83  Identities=8%  Similarity=0.043  Sum_probs=48.7

Q ss_pred             CCCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCC-Ccccc-cc-----hhhhc
Q psy13086         16 EKKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPD-PHFKR-CK-----YKWRI   81 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d-~~f~~-~h-----~~~~~   81 (169)
                      .++.+||-.||+.|       ++.. .+++|+++|.++..++.+++ +.  .+.+ +.+.+ ..+.. ..     ...-+
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~-~G~~V~~~~~~~~~~~~~~~-~g--~~~~-~d~~~~~~~~~~~~~~~~~~~d~v  218 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKL-KGCKVVGAAGSDEKIAYLKQ-IG--FDAA-FNYKTVNSLEEALKKASPDGYDCY  218 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHH-TT--CSEE-EETTSCSCHHHHHHHHCTTCEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHh-cC--CcEE-EecCCHHHHHHHHHHHhCCCCeEE
Confidence            34688999999656       2333 35699999999988887733 32  1211 22222 11110 00     00000


Q ss_pred             ---ccHHHHHHHHHhccCCcEEEEE
Q psy13086         82 ---INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        82 ---~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                         .-...++...+.|++||++++.
T Consensus       219 i~~~g~~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          219 FDNVGGEFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             EESSCHHHHHHHHTTEEEEEEEEEC
T ss_pred             EECCChHHHHHHHHHHhcCCEEEEE
Confidence               1135688889999999999875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=81.54  E-value=3  Score=33.93  Aligned_cols=85  Identities=7%  Similarity=-0.047  Sum_probs=49.9

Q ss_pred             CCCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccc-cch-------hhhc
Q psy13086         16 EKKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKR-CKY-------KWRI   81 (169)
Q Consensus        16 ~~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~-~h~-------~~~~   81 (169)
                      .++.+||=+|+|. |     +|+...-..|+++|.++.-++.|++-   ..+.+ +.+.++.+.. ...       .-++
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l---Ga~~v-i~~~~~~~~~~i~~~~~~~~gg~Dv  256 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV---GATAT-VDPSAGDVVEAIAGPVGLVPGGVDV  256 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH---TCSEE-ECTTSSCHHHHHHSTTSSSTTCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc---CCCEE-ECCCCcCHHHHHHhhhhccCCCCCE
Confidence            3467889899853 3     55554333899999999888877653   12221 1121111100 000       0000


Q ss_pred             ----c-cHHHHHHHHHhccCCcEEEEEe
Q psy13086         82 ----I-NQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        82 ----~-~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                          + ....++...+.|++||++++..
T Consensus       257 vid~~G~~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          257 VIECAGVAETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             EEECSCCHHHHHHHHHHEEEEEEEEECS
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEEEe
Confidence                1 2578999999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	169
d2fcaa1	204	c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr	3e-06

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 17/75 (22%), Positives = 39/75 (52%)

Query: 62  KMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP 121
           +++  + DP  K+   K R+   + L +Y  V+ +GG ++  TD + L ++ +  F+E+ 
Sbjct: 102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG 161

Query: 122 LFVECDLEELKRTDP 136
           L +     +L  ++ 
Sbjct: 162 LLLTYVSLDLHNSNL 176

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	169
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	100.0
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	100.0
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.66
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.65
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.64
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.62
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.62
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.59
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.58
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.56
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.56
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.56
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.55
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.55
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.54
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.54
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.54
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.53
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.52
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.51
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.51
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.5
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.49
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.49
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.49
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.47
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.47
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.45
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.45
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.45
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.45
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.41
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.41
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.4
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.39
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.37
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.35
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.35
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.34
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.33
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.32
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.29
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.28
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.24
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.23
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.2
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.12
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.04
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.0
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.95
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.95
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.93
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.92
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.92
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.86
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.78
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.77
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.77
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.74
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.73
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.7
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.66
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.65
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.61
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.59
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.57
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.55
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.55
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.54
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.52
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.45
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.4
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.39
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.36
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.33
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.33
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.32
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.32
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.22
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.19
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.14
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.01
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.9
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.89
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.83
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.83
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.69
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.65
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.64
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.63
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.52
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.51
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.36
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.19
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.13
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	96.85
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.75
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.69
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.63
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.3
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.07
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.49
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.49
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.09
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.97
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.86
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.62
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	94.48
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.91
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.9
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.74
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.42
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.14
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.54
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.31
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.48
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.89
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.13
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.01
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	88.97
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.53
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	87.43
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	87.29
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	87.18
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	86.55
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	86.19
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	83.18
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	82.43
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	81.53

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=8.5e-36  Score=231.49  Aligned_cols=153  Identities=20%  Similarity=0.295  Sum_probs=130.5

Q ss_pred             CCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------
Q psy13086          2 DWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------   57 (169)
Q Consensus         2 ~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------   57 (169)
                      +|+++|++.       ++.|||||||+|     +|+.+|+.+++|||+++.++..|.+++.                   
T Consensus        23 ~w~~~f~~~-------~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~   95 (204)
T d1yzha1          23 KWRDLFGND-------NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD   95 (204)
T ss_dssp             THHHHHTSC-------CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG
T ss_pred             cHHHHcCCC-------CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhh
Confidence            688999985       689999999999     8899999999999999999999875432                   


Q ss_pred             ----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCcccccc
Q psy13086         58 ----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKR  133 (169)
Q Consensus        58 ----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~  133 (169)
                          .++|.|++.|||||++.+|+++|++.+.+|++++++|||||.|+|+||.++|+.++.+.+..++.+......... 
T Consensus        96 ~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~~~~~~~-  174 (204)
T d1yzha1          96 YFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDLH-  174 (204)
T ss_dssp             TSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGG-
T ss_pred             hccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccccccccc-
Confidence                778899999999999999999999999999999999999999999999999999999998877643221111111 


Q ss_pred             CCCCCCCCCCCCHHHHHHHHcCCCeEEEEEE
Q psy13086        134 TDPVVDKLYQSTEEGQKVTRNKGEKFCAVFR  164 (169)
Q Consensus       134 ~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~  164 (169)
                      ...  ....+.|+||++|.++|++||++.|+
T Consensus       175 ~~~--~~~~~~T~yE~k~~~~G~~Iy~l~~~  203 (204)
T d1yzha1         175 ASD--FEGNVMTEYEQKFSNKGQVIYRVEAE  203 (204)
T ss_dssp             GSC--CCCCCCCHHHHHTGGGCCCCEEEEEE
T ss_pred             ccc--cCCCCCCHHHHHHHHcCCCeEEEEEE
Confidence            111  24567899999999999999999986

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.4e-36  Score=234.63  Aligned_cols=155  Identities=20%  Similarity=0.276  Sum_probs=134.6

Q ss_pred             CCCccCCCCCCCCCCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------
Q psy13086          2 DWSPLYPELKDPTCEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------   57 (169)
Q Consensus         2 ~~~~~f~~~~~~~~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------   57 (169)
                      +|+++|++.       ++.|||||||+|     +|+.+|+.+++|||+++.++..|.+++.                   
T Consensus        21 ~w~~~F~~~-------~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~   93 (204)
T d2fcaa1          21 KWNTVFGND-------NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD   93 (204)
T ss_dssp             CHHHHHTSC-------CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH
T ss_pred             HHHHHcCCC-------CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhc
Confidence            689999985       689999999999     8899999999999999999999876432                   


Q ss_pred             ----cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCcccccc
Q psy13086         58 ----LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKR  133 (169)
Q Consensus        58 ----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~  133 (169)
                          +++|.+++.||+||++.+|+++|++.+.++++++|+|||||.|+|+||.+.|++|+.+.+.+++.|......+.. 
T Consensus        94 ~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~~~~~~~d~~-  172 (204)
T d2fcaa1          94 VFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVSLDLH-  172 (204)
T ss_dssp             HCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGG-
T ss_pred             ccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCccccCChhhc-
Confidence                779999999999999999999999999999999999999999999999999999999999988866443222222 


Q ss_pred             CCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEec
Q psy13086        134 TDPVVDKLYQSTEEGQKVTRNKGEKFCAVFRRG  166 (169)
Q Consensus       134 ~~~~~~~~~~~T~ye~~~~~~g~~i~~~~~~r~  166 (169)
                      ...  .+..+.|+||+||.++|++||++.|+++
T Consensus       173 ~~~--~~~~~~T~yE~k~~~~G~~iy~~~~~~~  203 (204)
T d2fcaa1         173 NSN--LEGNIMTEYEEKFSALGQPIYRAEVEWR  203 (204)
T ss_dssp             GSS--CTTCCCCTTGGGSSSSSCCCEEEEEECC
T ss_pred             ccC--CCCCCCCHHHHHHHHcCCCeEEEEEEEe
Confidence            222  2446789999999999999999999875

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.66  E-value=2.2e-16  Score=120.98  Aligned_cols=130  Identities=13%  Similarity=0.128  Sum_probs=82.4

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceE--------EEeCCCCccccc-----
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKM--------FFLYPDPHFKRC-----   75 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v--------~~~f~d~~f~~~-----   75 (169)
                      +.++.+|||||||+|     +++..  .+++|+|+|+.|++.|++++. ...+.+        .++|++.+||..     
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~   90 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA   90 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccc
Confidence            345789999999999     55553  589999999999999988764 112221        245666677743     


Q ss_pred             -chhhhcccHHHHHHHHHhccCCcEEEEEeCC---hHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHH
Q psy13086         76 -KYKWRIINQNLLSEYAYVLSEGGIVYTITDV---KDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKV  151 (169)
Q Consensus        76 -h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~---~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~  151 (169)
                       ||...  ...++++++|+|||||.+++.+..   ..........+....             ...+...+..+++.+.+
T Consensus        91 l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l  155 (231)
T d1vl5a_          91 AHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKER-------------DYSHHRAWKKSDWLKML  155 (231)
T ss_dssp             GGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHH-------------CTTCCCCCBHHHHHHHH
T ss_pred             ccccCC--HHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhc-------------ccCcccCCCHHHHHHHH
Confidence             22211  368999999999999999987422   122221211111100             00012335567788888


Q ss_pred             HHcCCCeEEE
Q psy13086        152 TRNKGEKFCA  161 (169)
Q Consensus       152 ~~~g~~i~~~  161 (169)
                      .+.|..+-.+
T Consensus       156 ~~aGf~~~~~  165 (231)
T d1vl5a_         156 EEAGFELEEL  165 (231)
T ss_dssp             HHHTCEEEEE
T ss_pred             HHCCCEEEEE
Confidence            9999876443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.65  E-value=1.6e-16  Score=122.27  Aligned_cols=146  Identities=10%  Similarity=0.091  Sum_probs=81.5

Q ss_pred             CCeEEEEcCccc-----ccCc--CCCCcEEEEeCCHHHHHHHHHHhc-----cccceEE---EeCCCCcccc------cc
Q psy13086         18 KVEFVDVGCGKL-----YLPM--FPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMF---FLYPDPHFKR------CK   76 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~--~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~---~~f~d~~f~~------~h   76 (169)
                      +.+|||||||||     +++.  .|+++|+|||+|+.|++.|++++.     ..+....   ..++.+.++.      .|
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~  119 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ  119 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence            689999999999     4543  478999999999999999998764     1111111   1122222221      22


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEeC----ChHHHHHHHH---HH-hcCCCceecCccccccCCCCCCCCCCCCHHH
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTITD----VKDLHDWIVS---HF-TEHPLFVECDLEELKRTDPVVDKLYQSTEEG  148 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d----~~~~~~~~~~---~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye  148 (169)
                      +...-....+|++++|+|||||.|++.+.    .+........   .+ ... .+.............-.....+..+++
T Consensus       120 ~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~  198 (225)
T d1im8a_         120 FLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRAN-GYSELEVSQKRTALENVMRTDSIETHK  198 (225)
T ss_dssp             GSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHT-TGGGSTTHHHHHHHHHHCCCCCHHHHH
T ss_pred             ccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHc-CCCHHHHHHHHHHhhcccCCCCHHHHH
Confidence            22111135899999999999999999742    2222111111   11 112 222111000000000001224556778


Q ss_pred             HHHHHcCCCeEEEEEE
Q psy13086        149 QKVTRNKGEKFCAVFR  164 (169)
Q Consensus       149 ~~~~~~g~~i~~~~~~  164 (169)
                      ....+.|..-...+|+
T Consensus       199 ~~L~~aGF~~v~~~~~  214 (225)
T d1im8a_         199 VRLKNVGFSQVELWFQ  214 (225)
T ss_dssp             HHHHHHTCSEEEEEEE
T ss_pred             HHHHHcCCCceEEeee
Confidence            8888999987776665

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=5.7e-16  Score=119.63  Aligned_cols=85  Identities=15%  Similarity=0.216  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceE--------EEeCCCCccccc------
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKM--------FFLYPDPHFKRC------   75 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v--------~~~f~d~~f~~~------   75 (169)
                      .++.+|||||||||     +++..  .+++|||+|+.|++.|++++. ..++.+        .++|++..||..      
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   92 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA   92 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeecee
Confidence            35789999999999     55553  589999999999999988764 111111        235667777742      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |+..  ....++++++|+|||||.+++.+
T Consensus        93 ~~~~--d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          93 HHFS--DVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             GGCS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccc--CHHHHHHHHHHeeCCCcEEEEEE
Confidence            2221  13689999999999999999864

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=2.7e-16  Score=119.45  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---cccc-----eEEEeCCCCcccc------cch
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---LYLK-----KMFFLYPDPHFKR------CKY   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---~~~d-----~v~~~f~d~~f~~------~h~   77 (169)
                      ++.+|||||||+|     +++  ...+|+|+|+|+.|++.|+++..   ..+.     ...+.+++..||.      .+|
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~--~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~  114 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLED--YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  114 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCcchhhhhHhh--hhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence            4689999999999     444  35799999999999999998754   0111     1113445555553      222


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      ...-...+++++++++|||||++++...
T Consensus       115 ~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         115 FEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            1110125689999999999999988754

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=7.2e-17  Score=128.09  Aligned_cols=97  Identities=18%  Similarity=0.227  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----cccceEEEeCCCCcccccchhhhcccHHHH
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----LYLKKMFFLYPDPHFKRCKYKWRIINQNLL   87 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l   87 (169)
                      +..+|||||||+|     ++...|+.+++|||+|+.|++.|+++.+    ...|.-.++|++..||......   .+..+
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~---~~~~~  160 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIY---APCKA  160 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEES---CCCCH
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecC---CHHHH
Confidence            3679999999999     7778899999999999999999998754    1112222455566665432211   12347


Q ss_pred             HHHHHhccCCcEEEEEeCChHHHHHHHHH
Q psy13086         88 SEYAYVLSEGGIVYTITDVKDLHDWIVSH  116 (169)
Q Consensus        88 ~~~~rvLkpGG~l~i~~d~~~~~~~~~~~  116 (169)
                      +|++|+|||||.++++++.++....+...
T Consensus       161 ~e~~rvLkpgG~l~~~~p~~~~l~el~~~  189 (268)
T d1p91a_         161 EELARVVKPGGWVITATPGPRHLMELKGL  189 (268)
T ss_dssp             HHHHHHEEEEEEEEEEEECTTTTHHHHTT
T ss_pred             HHHHHHhCCCcEEEEEeeCCcchHHHHHH
Confidence            89999999999999999877655444433

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=4.7e-16  Score=119.47  Aligned_cols=83  Identities=14%  Similarity=0.165  Sum_probs=61.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceEEEeCCCCccccc-------chhhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKMFFLYPDPHFKRC-------KYKWR   80 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v~~~f~d~~f~~~-------h~~~~   80 (169)
                      +.+|||||||+|     ++..  +.+|+|||+|+.|++.|+++..     +.++  .+.|++..||..       ||.. 
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~--~l~~~~~~fD~ii~~~~~~~~~~-  117 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAE--DLPFPSGAFEAVLALGDVLSYVE-  117 (246)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTT--SCCSCTTCEEEEEECSSHHHHCS-
T ss_pred             CCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccccccccccccc--ccccccccccceeeecchhhhhh-
Confidence            678999999999     5543  5799999999999999998754     1122  234666666532       2211 


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                       ....+|++++|+|||||.+++.++.
T Consensus       118 -d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         118 -NKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             -CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             -hHHHHHHHHHhhcCcCcEEEEEECC
Confidence             1357999999999999999998754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=1.1e-15  Score=118.85  Aligned_cols=87  Identities=11%  Similarity=0.037  Sum_probs=60.9

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c----ccceEEE----eCCCCccccc-----
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L----YLKKMFF----LYPDPHFKRC-----   75 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~----~~d~v~~----~f~d~~f~~~-----   75 (169)
                      +.++.+|||||||+|     +++.. ++.++|||+|+.|++.|+++.. .    .++.+..    .+++..||..     
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~~~~~  109 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGA  109 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEEEEeh
Confidence            344789999999999     55554 4799999999999999988754 1    1221111    1334445532     


Q ss_pred             -chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 -KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 -h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       ++..  ....++++++|+|||||++++..
T Consensus       110 ~~~~~--d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         110 TWIAG--GFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             GGGTS--SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hhccC--CHHHHHHHHHHHcCcCcEEEEEe
Confidence             1221  13789999999999999999964

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.56  E-value=8.1e-16  Score=122.08  Aligned_cols=87  Identities=15%  Similarity=0.076  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----cccceE-----EEeCCCCccccc----
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----LYLKKM-----FFLYPDPHFKRC----   75 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----~~~d~v-----~~~f~d~~f~~~----   75 (169)
                      +.++.+|||||||+|     +++++ +++|+|||+|+.|++.|+++..     ..+..+     .+++++..||..    
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~  143 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  143 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence            345789999999999     55554 6799999999999999987654     111111     134555556642    


Q ss_pred             --chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 --KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 --h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        +|...  ...++++++|+|||||+|++.+
T Consensus       144 ~l~h~~d--~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         144 AFLHSPD--KLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             CGGGCSC--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhccC--HHHHHHHHHHhcCCCcEEEEEE
Confidence              22211  3689999999999999999874

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.56  E-value=3.4e-15  Score=116.74  Aligned_cols=87  Identities=16%  Similarity=0.148  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYP   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~   68 (169)
                      ++.+|||||||+|     ++.. ...+|+|||+|+.|++.|+++..                       .++|.|.+.+.
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence            4689999999999     3333 33589999999999999987754                       12333332221


Q ss_pred             CCcccccchhhh--cccHHHHHHHHHhccCCcEEEEEeCChHHH
Q psy13086         69 DPHFKRCKYKWR--IINQNLLSEYAYVLSEGGIVYTITDVKDLH  110 (169)
Q Consensus        69 d~~f~~~h~~~~--~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~  110 (169)
                            .|+.-.  -....++++++++|||||.|++.+...+..
T Consensus       103 ------l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i  140 (252)
T d1ri5a_         103 ------FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVI  140 (252)
T ss_dssp             ------GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred             ------eeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHH
Confidence                  222100  012479999999999999999987665443

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=3.9e-15  Score=118.34  Aligned_cols=97  Identities=15%  Similarity=0.203  Sum_probs=77.4

Q ss_pred             CCCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEE
Q psy13086         16 EKKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFF   65 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~   65 (169)
                      .++.+|||+|||+|     ||.. .|+.+|+++|+++++++.|++|+.                        +++|.|++
T Consensus        95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l  174 (264)
T d1i9ga_          95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL  174 (264)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred             CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEE
Confidence            45789999999999     5554 588899999999999999988643                        56777777


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCcee
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVE  125 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~  125 (169)
                      ..|+||             .++.++.++|||||.+++-++.-+-.....+.+.+...|..
T Consensus       175 dlp~P~-------------~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~  221 (264)
T d1i9ga_         175 DMLAPW-------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTE  221 (264)
T ss_dssp             ESSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCC
T ss_pred             ecCCHH-------------HHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeec
Confidence            777775             57999999999999999988877666656677765445643

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.3e-15  Score=115.68  Aligned_cols=83  Identities=12%  Similarity=-0.042  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d   69 (169)
                      ++.+|||||||+|     +++..+ .+++|||+|+.|++.|+++..                      +++|.+++....
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~  131 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  131 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             CCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence            3678999999999     555433 589999999999999998754                      334443321111


Q ss_pred             CcccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         70 PHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ......|..   ....++++++|+|||||+|++.
T Consensus       132 ~~~~~~~~~---~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         132 LSEETWHTH---QFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CBGGGTTTH---HHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccccc---CHHHHHHHHHHHcCCCcEEEEE
Confidence            111111111   1367999999999999999874

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.55  E-value=2.9e-15  Score=111.03  Aligned_cols=87  Identities=10%  Similarity=-0.027  Sum_probs=56.9

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhcc------ccc----------eEEEeCCCC----
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSL------YLK----------KMFFLYPDP----   70 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~------~~d----------~v~~~f~d~----   70 (169)
                      +++.+|||||||+|     ||++  +.+|+|||+|+.|++.|+++.+.      ..+          .+.-.+.+.    
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~   96 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   96 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence            34789999999999     6654  68999999999999999987640      000          000011110    


Q ss_pred             --cccc------cchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         71 --HFKR------CKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        71 --~f~~------~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        .|+.      .++........++++++++|||||.+++.+
T Consensus        97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence              1121      111111112579999999999999988864

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.54  E-value=4.6e-15  Score=114.02  Aligned_cols=83  Identities=14%  Similarity=0.171  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCCCC
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~d~   70 (169)
                      +.++.+|||||||+|     +|...|+.+|+|||+|+.|++.|+++..                   ..++.+.+.|.+-
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~  133 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI  133 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence            345799999999999     7777888899999999999999987653                   1122222211110


Q ss_pred             cccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                          .|..   ....++++++++|||||.+++..
T Consensus       134 ----~~~~---~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         134 ----AQKN---QIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             ----CSTT---HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----cChh---hHHHHHHHHHHHhccCCeEEEEE
Confidence                0111   12579999999999999999864

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=7.1e-15  Score=116.87  Aligned_cols=95  Identities=19%  Similarity=0.300  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCC
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYP   68 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~   68 (169)
                      .++.+|||+|||+|     +|+.. |..+|+|+|+|+++++.|+++++                     ..+|.+++..|
T Consensus       102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d~p  181 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVP  181 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEecCC
Confidence            45789999999999     65553 78899999999999999998764                     34555555556


Q ss_pred             CCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCce
Q psy13086         69 DPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFV  124 (169)
Q Consensus        69 d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~  124 (169)
                      +||             .+++++.++|||||++++.++.-+..+.+.+.+.+++ |.
T Consensus       182 ~p~-------------~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~g-F~  223 (266)
T d1o54a_         182 DPW-------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELP-FI  223 (266)
T ss_dssp             CGG-------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSS-EE
T ss_pred             CHH-------------HHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCC-ce
Confidence            553             5899999999999999988877666666777777665 53

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.54  E-value=1.8e-14  Score=113.67  Aligned_cols=95  Identities=16%  Similarity=0.143  Sum_probs=75.1

Q ss_pred             CCCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCC
Q psy13086         16 EKKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYP   68 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~   68 (169)
                      .++.+|||+|||+|     +|+. .|+..|+++|+++.+++.|+++++                     .++|.|++..|
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p  163 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIP  163 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCS
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCC
Confidence            34789999999999     5544 577899999999999999998754                     45666666666


Q ss_pred             CCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCce
Q psy13086         69 DPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFV  124 (169)
Q Consensus        69 d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~  124 (169)
                      +||             .+++++.++|||||+|++..+.-+-.....+.+.+++ |.
T Consensus       164 ~p~-------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~g-f~  205 (250)
T d1yb2a1         164 DPW-------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASG-MH  205 (250)
T ss_dssp             CGG-------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGT-EE
T ss_pred             chH-------------HHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCC-Cc
Confidence            664             5799999999999999988776655556667777665 53

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=4.4e-15  Score=114.88  Aligned_cols=82  Identities=16%  Similarity=0.180  Sum_probs=56.2

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCCCCccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~d~~f~   73 (169)
                      ..+|||||||||     +++.  +.+++|||+|+.|++.|+++++                   .++|.|.+.+.     
T Consensus        42 ~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~-----  114 (251)
T d1wzna1          42 VRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFS-----  114 (251)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSS-----
T ss_pred             CCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhh-----
Confidence            578999999999     4443  4689999999999999998754                   22333332211     


Q ss_pred             ccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         74 RCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        74 ~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ..++...-....+|++++++|||||.+++....
T Consensus       115 ~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         115 TIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            011110001247999999999999999986543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=2.1e-14  Score=108.45  Aligned_cols=128  Identities=13%  Similarity=0.099  Sum_probs=74.3

Q ss_pred             CCeEEEEcCccc-ccCcCCCCcEEEEeCCHHHHHHHHHH-hc-cccceEEEeCCCCcccc------cchhhhcccHHHHH
Q psy13086         18 KVEFVDVGCGKL-YLPMFPSTLILGLEIRVKVSDYVIDE-WS-LYLKKMFFLYPDPHFKR------CKYKWRIINQNLLS   88 (169)
Q Consensus        18 ~~~iLDiGCG~G-la~~~p~~~v~GiDis~~~l~~a~~~-~~-~~~d~v~~~f~d~~f~~------~h~~~~~~~~~~l~   88 (169)
                      ..+|||||||+| ++...  ..++|||+|+.|++.|+++ +. ...|.-.+.+++..||.      .||...  ...+++
T Consensus        37 ~~~vLDiGcG~G~~~~~~--~~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d--~~~~l~  112 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPL--KIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDD--PERALK  112 (208)
T ss_dssp             SSCEEEETCTTSTTHHHH--TCCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--HHHHHH
T ss_pred             CCeEEEECCCCccccccc--ceEEEEeCChhhcccccccccccccccccccccccccccccccccccccccc--cccchh
Confidence            467999999999 44433  3568999999999999975 22 11111112333333432      222221  367999


Q ss_pred             HHHHhccCCcEEEEEeCChH-HHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCeEEE
Q psy13086         89 EYAYVLSEGGIVYTITDVKD-LHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFCA  161 (169)
Q Consensus        89 ~~~rvLkpGG~l~i~~d~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i~~~  161 (169)
                      +++|+|||||.+++.+.... +.............            .+.+....+..+.+....+.|.++..+
T Consensus       113 ~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~~l~~~l~~~Gf~~i~v  174 (208)
T d1vlma_         113 EAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSV------------FYKNARFFSTEELMDLMRKAGFEEFKV  174 (208)
T ss_dssp             HHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-C------------CSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             hhhhcCCCCceEEEEecCCcchhHHhhhhcccccc------------ccccccCCCHHHHHHHHHHcCCeEEEE
Confidence            99999999999999874432 22111111111000            000112344556778888899876543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.51  E-value=1.6e-14  Score=111.99  Aligned_cols=83  Identities=12%  Similarity=0.179  Sum_probs=56.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCCCCccc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~d~~f~   73 (169)
                      +.+|||||||+|     +++..  .+++|||+|+.|++.|+++++                   +++|.|...+.     
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~-----  110 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLD-----  110 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTT-----
T ss_pred             CCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeee-----
Confidence            578999999999     55543  589999999999999998754                   23333332111     


Q ss_pred             ccchhh-hcccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         74 RCKYKW-RIINQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        74 ~~h~~~-~~~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                      ..++.. .-....++++++++|||||.|++....+
T Consensus       111 ~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  145 (246)
T d1y8ca_         111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             GGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             eeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence            011100 0012569999999999999999855333

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.51  E-value=2.4e-14  Score=113.94  Aligned_cols=86  Identities=19%  Similarity=0.325  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-cccceEE-------EeCCCCccccc------c
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-LYLKKMF-------FLYPDPHFKRC------K   76 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-~~~d~v~-------~~f~d~~f~~~------h   76 (169)
                      ++.+|||||||+|     ++...| +.+|+|+|+|+.|++.|++++. ...+.-+       +.+++ .||..      |
T Consensus        27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~-~fD~v~~~~~l~  105 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELND-KYDIAICHAFLL  105 (281)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-CEEEEEEESCGG
T ss_pred             CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccC-CceEEEEehhhh
Confidence            4688999999999     677666 4789999999999999998765 1111111       12222 24432      2


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      |...  ...++++++++|||||.+++.++
T Consensus       106 ~~~d--~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         106 HMTT--PETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             GCSS--HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cCCC--HHHHHHHHHHHcCcCcEEEEEEC
Confidence            2211  35799999999999999988763

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-14  Score=111.59  Aligned_cols=87  Identities=11%  Similarity=-0.072  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEE--------EeCCCCccccc------c
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMF--------FLYPDPHFKRC------K   76 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~--------~~f~d~~f~~~------h   76 (169)
                      ++.+|||||||+|     ++...+ .+|+|||+|++|++.|+++++ .....+.        +.+++..||..      |
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            3678999999999     444433 489999999999999998765 1111211        22334444432      2


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |...-...+++++++++|||||.+++.+
T Consensus       139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         139 HLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            2211012469999999999999999874

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.49  E-value=2.5e-14  Score=114.27  Aligned_cols=88  Identities=11%  Similarity=0.143  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEe---C--CCCccccc------ch
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFL---Y--PDPHFKRC------KY   77 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~---f--~d~~f~~~------h~   77 (169)
                      .++.+|||||||+|     +++.+ +++|+|||+|+++++.|++++.  +--+.+...   +  .+..||..      +|
T Consensus        51 ~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh  129 (280)
T d2fk8a1          51 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH  129 (280)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred             CCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHH
Confidence            45789999999999     44444 5799999999999999998865  111111111   1  11223321      11


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ...-..+.+|++++++|||||++++.+
T Consensus       130 ~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         130 FGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             TCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            111012689999999999999999864

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.49  E-value=8.5e-14  Score=106.91  Aligned_cols=136  Identities=10%  Similarity=-0.001  Sum_probs=76.8

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeC----CCCcccc------cchhhhcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLY----PDPHFKR------CKYKWRII   82 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f----~d~~f~~------~h~~~~~~   82 (169)
                      +.+|||||||+|     ++..  ..+|+|||+|+.|++.|+++....+..+...+    ++..||.      .+|...  
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d--   96 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD--   96 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS--
T ss_pred             CCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCC--
Confidence            567999999999     4444  35899999999999999987542111111111    1122332      222221  


Q ss_pred             cHHHHHHHH-HhccCCcEEEEEeCChH-HHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCeEE
Q psy13086         83 NQNLLSEYA-YVLSEGGIVYTITDVKD-LHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKFC  160 (169)
Q Consensus        83 ~~~~l~~~~-rvLkpGG~l~i~~d~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i~~  160 (169)
                      ...++++++ ++|||||.+++.+++.. +..........-............ ..  +...+.....+....+.|.++-.
T Consensus        97 ~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--h~~~~~~~~l~~~l~~~Gf~i~~  173 (225)
T d2p7ia1          97 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFA-HG--HRCTYALDTLERDASRAGLQVTY  173 (225)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHH-TT--CCCCCCHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccc-ee--eeeccCHHHHHHHHHHCCCEEEE
Confidence            257899998 89999999999875433 222111111100001111111111 01  12345556778889999998843

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=1.3e-14  Score=114.61  Aligned_cols=109  Identities=17%  Similarity=0.126  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEE------eCCCCcccccchh-hhcccHH
Q psy13086         17 KKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFF------LYPDPHFKRCKYK-WRIINQN   85 (169)
Q Consensus        17 ~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~------~f~d~~f~~~h~~-~~~~~~~   85 (169)
                      ++.+|||+|||+|   ++....+.+|+|+|+|+.|++.|++|+. +.++..++      .+++..|+..... -.-....
T Consensus       120 ~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~~l~~  199 (254)
T d2nxca1         120 PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAELHAA  199 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHHHHHH
T ss_pred             ccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccccHHH
Confidence            4689999999999   2222235789999999999999998765 22221111      1222223321100 0001357


Q ss_pred             HHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086         86 LLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        86 ~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      +++++.++|||||+++++.-.......+.+.+..++ |...
T Consensus       200 l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~G-f~~~  239 (254)
T d2nxca1         200 LAPRYREALVPGGRALLTGILKDRAPLVREAMAGAG-FRPL  239 (254)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTT-CEEE
T ss_pred             HHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCC-CEEE
Confidence            889999999999999986433333455566666554 5543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=2.9e-14  Score=113.53  Aligned_cols=83  Identities=18%  Similarity=0.200  Sum_probs=56.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------------cccceEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------------LYLKKMF   64 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------------~~~d~v~   64 (169)
                      ..+|||||||+|     |++.  +.+|+|||+|+.||+.|+++..                            .++|.|.
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~  134 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  134 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence            468999999999     5544  5799999999999999987532                            2233333


Q ss_pred             EeC------CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChH
Q psy13086         65 FLY------PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKD  108 (169)
Q Consensus        65 ~~f------~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~  108 (169)
                      ..+      +++....    .  ....+|++++|+|||||.|++.....+
T Consensus       135 ~~~~~~~~~~~~~~~~----~--~~~~~l~~~~~~LkpgG~li~~~~~~~  178 (292)
T d1xvaa_         135 CLGNSFAHLPDSKGDQ----S--EHRLALKNIASMVRPGGLLVIDHRNYD  178 (292)
T ss_dssp             ECSSCGGGSCCTTSSS----H--HHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             EecCchhhcCCcccCh----H--HHHHHHHHHHHHcCcCcEEEEeecCHH
Confidence            211      1110000    0  124699999999999999999765443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.8e-14  Score=110.59  Aligned_cols=42  Identities=12%  Similarity=0.051  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCccc-ccC--cCC-CCcEEEEeCCHHHHHHHHHHhc
Q psy13086         16 EKKVEFVDVGCGKL-YLP--MFP-STLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-la~--~~p-~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++.+|||||||+| ++.  ..+ ..+|+|+|+|+.|++.|++++.
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~   95 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLK   95 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHh
Confidence            34678999999999 222  112 2479999999999999987653

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.45  E-value=7e-14  Score=105.30  Aligned_cols=85  Identities=11%  Similarity=0.029  Sum_probs=57.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe-------CCCCcccc------cchh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL-------YPDPHFKR------CKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~-------f~d~~f~~------~h~~   78 (169)
                      +.+|||||||+|     ++++  ..+|+|+|+|+.|++.|+++.. ..++.+...       .++..||.      .|+.
T Consensus        31 ~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~  108 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL  108 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGGS
T ss_pred             CCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeecC
Confidence            568999999999     5554  4689999999999999987654 222222110       12233332      1221


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..-...+++++++++|+|||.+++.+
T Consensus       109 ~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         109 EAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             CTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            11112579999999999999999875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.45  E-value=7.4e-14  Score=108.65  Aligned_cols=87  Identities=10%  Similarity=0.138  Sum_probs=58.9

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEE------eCCCCcccc------c
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFF------LYPDPHFKR------C   75 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~------~f~d~~f~~------~   75 (169)
                      +.++.+|||||||+|     +|...|+..|+|||+|+.|++.|+++..  ..+..+..      .+.+..++.      .
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~  151 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV  151 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence            345789999999999     7777888999999999999999987654  11111110      011111110      1


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ++...  ...+++++.++|||||.++++
T Consensus       152 ~~~~~--~~~~l~~~~r~LKpgG~~~i~  177 (230)
T d1g8sa_         152 AQPNQ--AEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CSTTH--HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchHH--HHHHHHHHHHhcccCceEEEE
Confidence            11110  256899999999999999886

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.45  E-value=2e-13  Score=102.23  Aligned_cols=102  Identities=15%  Similarity=0.067  Sum_probs=67.7

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-ccc-ceEEE--------eCCCCcccccc---h
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYL-KKMFF--------LYPDPHFKRCK---Y   77 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~-d~v~~--------~f~d~~f~~~h---~   77 (169)
                      .++.+|||||||+|     +|..  ..+|+|+|+|+.|++.|++|++ ..+ +.+.+        .++.+.|+..-   .
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~  109 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGS  109 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCC
T ss_pred             CCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCc
Confidence            45789999999999     5544  4589999999999999999875 111 22221        22334444210   0


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP  121 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~  121 (169)
                      ..  ...++++.+.+.|||||++++.....+-.....+.+..+.
T Consensus       110 ~~--~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~  151 (186)
T d1l3ia_         110 GG--ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLG  151 (186)
T ss_dssp             TT--CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTT
T ss_pred             cc--cchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcC
Confidence            01  1267899999999999999887655444444555555443

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=5e-14  Score=113.22  Aligned_cols=89  Identities=12%  Similarity=0.122  Sum_probs=61.0

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEE-----EeCCCCccccc------c
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMF-----FLYPDPHFKRC------K   76 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~-----~~f~d~~f~~~------h   76 (169)
                      +.++.+|||||||.|     +|..++ ++++||++|++.++.|++++.  +-.+.+.     ..+++..||..      .
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~e  137 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFE  137 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGG
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHH
Confidence            345789999999999     566664 799999999999999988765  1111111     12334445531      1


Q ss_pred             hhhhc-------ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRI-------INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~-------~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |...-       ..+.++++++++|||||++++.+
T Consensus       138 H~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         138 HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             GTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             hcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            11100       02689999999999999999875

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.2e-13  Score=110.93  Aligned_cols=96  Identities=13%  Similarity=0.128  Sum_probs=70.5

Q ss_pred             CCCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc--------------------------------
Q psy13086         16 EKKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS--------------------------------   57 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~--------------------------------   57 (169)
                      .++.+|||+|||+|     ||.. .|+..|+++|+++++++.|++|+.                                
T Consensus        97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~  176 (324)
T d2b25a1          97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  176 (324)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence            44789999999999     5554 578899999999999999998653                                


Q ss_pred             --cccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCC-Cce
Q psy13086         58 --LYLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHP-LFV  124 (169)
Q Consensus        58 --~~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~-~f~  124 (169)
                        .++|.|++..|+||             .++.++.++|||||.|++-++.-+-.....+.+..+. .|.
T Consensus       177 ~~~~fD~V~LD~p~P~-------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~  233 (324)
T d2b25a1         177 KSLTFDAVALDMLNPH-------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALS  233 (324)
T ss_dssp             ----EEEEEECSSSTT-------------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCcceEeecCcCHH-------------HHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCce
Confidence              23455555455554             4799999999999999987766554444666665443 353

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.41  E-value=6.8e-13  Score=103.69  Aligned_cols=86  Identities=16%  Similarity=0.007  Sum_probs=58.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--c---ccceEEEeCCC---Ccccc------cchh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--L---YLKKMFFLYPD---PHFKR------CKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~---~~d~v~~~f~d---~~f~~------~h~~   78 (169)
                      ..+|||||||+|     +++++|+..++++|+ +.|++.|++++.  +   .++.+.-.+.+   +.+|.      .|+.
T Consensus        81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~  159 (253)
T d1tw3a2          81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNW  159 (253)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGS
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccC
Confidence            578999999999     888999999999998 678999988765  1   12222111111   12332      1221


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..-....+|++++++|||||+|+|..
T Consensus       160 ~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         160 PDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             CHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            11012468999999999999999874

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.40  E-value=6.2e-13  Score=100.06  Aligned_cols=88  Identities=14%  Similarity=0.226  Sum_probs=57.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccc--eEEE-------eCCCCccccc------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLK--KMFF-------LYPDPHFKRC------   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d--~v~~-------~f~d~~f~~~------   75 (169)
                      ++.+|||||||+|     ++...  .+++|+|+|+.|++.|++++. ..++  .+.+       .+++..||..      
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~--~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p~  129 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPI  129 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCS
T ss_pred             CCCeEEEEeecCChhHHHHHhhc--cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEEcccE
Confidence            4789999999999     55544  489999999999999998754 1111  0111       1112222211      


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                      |+... ....+++++.++|||||.+++.....
T Consensus       130 ~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         130 RAGKE-VLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             TTCHH-HHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             Eecch-hhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence            11111 13578999999999999998865433

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.39  E-value=3.8e-13  Score=107.67  Aligned_cols=89  Identities=18%  Similarity=0.187  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEEe-----CCCCccccc------c
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFFL-----YPDPHFKRC------K   76 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~~-----f~d~~f~~~------h   76 (169)
                      +.++.+|||||||.|     +|+.+ +++|+||++|+..++.|++++.  +..+.+.+.     ..+..||..      .
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~e  138 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFE  138 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGG
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhh
Confidence            445789999999999     56665 5899999999999999998765  222222221     112234421      1


Q ss_pred             hhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         77 YKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        77 ~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |...-....+++++.|+|||||++++.+
T Consensus       139 h~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         139 HFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             GTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence            1110012679999999999999999865

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.8e-13  Score=103.51  Aligned_cols=86  Identities=10%  Similarity=-0.046  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------cccceEEEe-------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------LYLKKMFFL-------   66 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~------------------~~~d~v~~~-------   66 (169)
                      ++.+|||+|||+|     ||.  .+.+|+|||+|+.||+.|+++..                  ..-+.+.+.       
T Consensus        45 ~~~rvLd~GCG~G~~a~~LA~--~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          45 SGLRVFFPLCGKAVEMKWFAD--RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             CSCEEEETTCTTCTHHHHHHH--TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            4689999999999     444  36799999999999999987643                  000111111       


Q ss_pred             --CCCCcccc------cchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         67 --YPDPHFKR------CKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        67 --f~d~~f~~------~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        ..+..|+.      .|+...-..+.+++++.++|||||++++.+
T Consensus       123 ~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         123 PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             GGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence              11223332      122211123679999999999999988874

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.35  E-value=4.4e-13  Score=105.35  Aligned_cols=87  Identities=13%  Similarity=0.043  Sum_probs=59.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEEE---eCCCC---cccc------cchh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMFF---LYPDP---HFKR------CKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~~---~f~d~---~f~~------~h~~   78 (169)
                      ..+|||||||+|     +++++|+.+++++|+ +.+++.|++++.  +.-+.+..   .+-++   .+|.      .|+.
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~  160 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNW  160 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGS
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccccccc
Confidence            578999999999     888999999999997 788999988765  11122221   12111   2332      1211


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      ..-....+|++++++|||||+|+|...
T Consensus       161 ~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         161 SDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            110124689999999999999998753

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.35  E-value=2.5e-13  Score=106.65  Aligned_cols=124  Identities=11%  Similarity=0.016  Sum_probs=74.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceE-----EEeCCCCcccc------cchhh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKM-----FFLYPDPHFKR------CKYKW   79 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v-----~~~f~d~~f~~------~h~~~   79 (169)
                      ..+|||||||+|     ++.... ..|+|||+|+.|++.|++++.  ..++.+     .+.+++..||.      .||..
T Consensus        94 ~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~  172 (254)
T d1xtpa_          94 TSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLT  172 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSC
T ss_pred             CCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccccc
Confidence            678999999999     343333 389999999999999998764  111111     11233334442      22222


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcCCCeE
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNKGEKF  159 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g~~i~  159 (169)
                      .-...++|++++++|||||.|+|......           ...+....      .+.  ...++...|++.+.+.|..+.
T Consensus       173 d~d~~~~l~~~~~~LkpgG~iii~e~~~~-----------~~~~~~d~------~d~--~~~rs~~~~~~l~~~aGf~ii  233 (254)
T d1xtpa_         173 DADFVKFFKHCQQALTPNGYIFFKENCST-----------GDRFLVDK------EDS--SLTRSDIHYKRLFNESGVRVV  233 (254)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEEBC-------------CCEEEET------TTT--EEEBCHHHHHHHHHHHTCCEE
T ss_pred             hhhhHHHHHHHHHhcCCCcEEEEEecCCC-----------CCcceecc------cCC--ceeCCHHHHHHHHHHcCCEEE
Confidence            11124789999999999999998753211           01111110      000  011345578888888888775


Q ss_pred             EE
Q psy13086        160 CA  161 (169)
Q Consensus       160 ~~  161 (169)
                      ..
T Consensus       234 ~~  235 (254)
T d1xtpa_         234 KE  235 (254)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=7.9e-13  Score=102.61  Aligned_cols=79  Identities=14%  Similarity=0.116  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeC
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLY   67 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f   67 (169)
                      .++.+|||+|||+|     +|... |+..|+|+|+|+.|++.|++++.                      ..+|.++..+
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~  151 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV  151 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEc
Confidence            45799999999999     66654 77899999999999999987654                      2223332222


Q ss_pred             CCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +.+.          ....+++++.++|||||.++++.
T Consensus       152 ~~~~----------~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         152 AQPT----------QAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             CSTT----------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccc----------hHHHHHHHHHHhcccCCeEEEEE
Confidence            2110          02568999999999999999863

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7.4e-13  Score=104.32  Aligned_cols=86  Identities=12%  Similarity=0.054  Sum_probs=57.6

Q ss_pred             CCeEEEEcCccc-----c----cCcCCC--CcEEEEeCCHHHHHHHHHHhc--cccceEEE----------------eCC
Q psy13086         18 KVEFVDVGCGKL-----Y----LPMFPS--TLILGLEIRVKVSDYVIDEWS--LYLKKMFF----------------LYP   68 (169)
Q Consensus        18 ~~~iLDiGCG~G-----l----a~~~p~--~~v~GiDis~~~l~~a~~~~~--~~~d~v~~----------------~f~   68 (169)
                      ..+|||||||+|     +    ...+++  ..++|||+|+.|++.|++++.  ..+..+.+                .++
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            347999999999     2    234554  368999999999999998754  11111111                123


Q ss_pred             CCcccc------cchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         69 DPHFKR------CKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        69 d~~f~~------~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      +..||.      .|+...  ...++++++++|||||.+++.+.
T Consensus       121 ~~~fD~I~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             CCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCceeEEEEccceecCCC--HHHHHHHHHhhCCCCCEEEEEEe
Confidence            334442      222221  36899999999999999988763

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=1.5e-12  Score=108.77  Aligned_cols=42  Identities=29%  Similarity=0.298  Sum_probs=36.3

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      +.++.++||||||+|     +|..++..+++|||+|+.|++.|++++
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~  260 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQY  260 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHH
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHH
Confidence            345789999999999     677778779999999999999998754

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.2e-12  Score=101.45  Aligned_cols=40  Identities=13%  Similarity=0.031  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCccc-cc--CcCC-CCcEEEEeCCHHHHHHHHHHh
Q psy13086         17 KKVEFVDVGCGKL-YL--PMFP-STLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        17 ~~~~iLDiGCG~G-la--~~~p-~~~v~GiDis~~~l~~a~~~~   56 (169)
                      ++.++||||||+| +.  ...+ ..+|+|+|+|+.|++.|++++
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~   97 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWL   97 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHH
Confidence            4689999999999 21  1212 248999999999999998754

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=1e-12  Score=100.80  Aligned_cols=87  Identities=15%  Similarity=0.203  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHhc-cccceEEE--------eCCCCcccccchhhh
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEWS-LYLKKMFF--------LYPDPHFKRCKYKWR   80 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~--------~f~d~~f~~~h~~~~   80 (169)
                      .++.+|||||||+|     +|+.. +...|+++|+++.+++.|++++. ..++.+..        .+.+..||.......
T Consensus        74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~  153 (213)
T d1dl5a1          74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG  153 (213)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhcc
Confidence            45789999999999     55554 67799999999999999998765 11222211        111122332111000


Q ss_pred             cccHHHHHHHHHhccCCcEEEEEe
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        ...+.+++.++|||||++++..
T Consensus       154 --~~~~p~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         154 --VDEVPETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             --BSCCCHHHHHHEEEEEEEEEEB
T ss_pred             --HHHhHHHHHHhcCCCcEEEEEE
Confidence              1123356778999999998753

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.2e-12  Score=103.11  Aligned_cols=87  Identities=15%  Similarity=0.016  Sum_probs=56.4

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------cccceEEEeCCC-----Cc
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------LYLKKMFFLYPD-----PH   71 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------~~~d~v~~~f~d-----~~   71 (169)
                      +.++.+|||||||+|     +|..++..+++|||+|+.|++.|++++.             ..++.+.-.+.+     ..
T Consensus       149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~  228 (328)
T d1nw3a_         149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI  228 (328)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccccc
Confidence            345789999999999     5667777789999999999999976432             111111111111     01


Q ss_pred             ccc-------cchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         72 FKR-------CKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        72 f~~-------~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ++.       ..+...  ....++++.|+|||||++++.
T Consensus       229 ~~advi~~~~~~f~~~--~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         229 ANTSVIFVNNFAFGPE--VDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             HHCSEEEECCTTTCHH--HHHHHHHHHTTCCTTCEEEES
T ss_pred             CcceEEEEcceecchH--HHHHHHHHHHhCCCCcEEEEe
Confidence            110       000011  256899999999999999764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.2e-12  Score=98.80  Aligned_cols=87  Identities=13%  Similarity=0.151  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc------cccceEEEe--------CCCCccccc
Q psy13086         16 EKKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS------LYLKKMFFL--------YPDPHFKRC   75 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~------~~~d~v~~~--------f~d~~f~~~   75 (169)
                      .++.+|||||||+|     +|+. .|..+|+|+|++++|++.|++++.      ..++.+.+.        +++..||..
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I  154 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI  154 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhh
Confidence            34789999999999     5554 467899999999999999987754      111222111        111223322


Q ss_pred             chhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         76 KYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        76 h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      +....  .+...+++.+.|||||++++..
T Consensus       155 ~~~~~--~~~ip~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         155 HVGAA--APVVPQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             EECSB--BSSCCHHHHHTEEEEEEEEEEE
T ss_pred             hhhcc--hhhcCHHHHhhcCCCcEEEEEE
Confidence            11100  1123456789999999998854

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=8.8e-11  Score=88.69  Aligned_cols=108  Identities=13%  Similarity=0.132  Sum_probs=73.5

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------------cccceEEEe
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------------LYLKKMFFL   66 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------------~~~d~v~~~   66 (169)
                      ++..+||++||+|     +++.+|+..++|+|.++.|++.|++++.                         .++|.|.+.
T Consensus        23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~D  102 (192)
T d1m6ya2          23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD  102 (192)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeec
Confidence            3689999999999     6667799999999999999999998653                         345555544


Q ss_pred             CCC--Ccccccchhhhc-ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCceec
Q psy13086         67 YPD--PHFKRCKYKWRI-INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFVEC  126 (169)
Q Consensus        67 f~d--~~f~~~h~~~~~-~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~~~  126 (169)
                      +.-  ++.+..  .+.+ .....+....++|+|||++.+.+-...-..-....+.....+...
T Consensus       103 lGvSs~Qld~~--~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~~~~~~~i  163 (192)
T d1m6ya2         103 LGVSTYQLKGE--NRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNSKKLRIL  163 (192)
T ss_dssp             CSCCHHHHHTS--HTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHHCSSEEES
T ss_pred             cchhHhhhhhh--hccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhhccccccC
Confidence            321  211111  1111 236789999999999999998875433233344555555555443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=9.2e-11  Score=93.15  Aligned_cols=103  Identities=10%  Similarity=0.061  Sum_probs=68.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------cccceEEEeCCCCcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------LYLKKMFFLYPDPHF   72 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------~~~d~v~~~f~d~~f   72 (169)
                      +.+|||+|||+|     ++..+|+..++|+|+|+.+++.|++|+.                    ..+|.|..+-  |+.
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNP--PYi  186 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNP--PYI  186 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECC--CCB
T ss_pred             ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecc--hhh
Confidence            578999999999     7788999999999999999999998764                    3455544321  111


Q ss_pred             cc----------cch-hhhc--------ccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhcCCCce
Q psy13086         73 KR----------CKY-KWRI--------INQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTEHPLFV  124 (169)
Q Consensus        73 ~~----------~h~-~~~~--------~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~~~~f~  124 (169)
                      ..          .+. ...+        +...++++..+.|+|||.+++...... ...+.+.+..++ |.
T Consensus       187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q-~~~v~~~l~~~g-f~  255 (274)
T d2b3ta1         187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQ-GEAVRQAFILAG-YH  255 (274)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSC-HHHHHHHHHHTT-CT
T ss_pred             hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchH-HHHHHHHHHHCC-CC
Confidence            10          000 0011        125689999999999999999754322 233444555443 44

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.04  E-value=7.7e-11  Score=95.22  Aligned_cols=88  Identities=11%  Similarity=0.021  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------------cccceEEEeCC
Q psy13086         17 KKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------------LYLKKMFFLYP   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------------~~~d~v~~~f~   68 (169)
                      ++.+|||++||+|   ++..-...+|+++|+|+.+++.|++|+.                         ..+|.|.+.-|
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP  224 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  224 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence            4678999999999   2222235689999999999999998754                         35666655432


Q ss_pred             CCcccc--cchhhh-cccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         69 DPHFKR--CKYKWR-IINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        69 d~~f~~--~h~~~~-~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                        .|..  ...... -...++++.+.++|||||.|+++|-.
T Consensus       225 --~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         225 --AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             --CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             --ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence              2211  110000 01256899999999999999998743

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=2.5e-10  Score=92.05  Aligned_cols=84  Identities=17%  Similarity=0.330  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--c---ccceEE-----EeCCCCcccccc------
Q psy13086         17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS--L---YLKKMF-----FLYPDPHFKRCK------   76 (169)
Q Consensus        17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~--~---~~d~v~-----~~f~d~~f~~~h------   76 (169)
                      ++.+|||||||+|    +|.+.....|+|+|.|+ |++.|++++.  +   .+..+.     +.++++.++...      
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~  116 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence            3688999999999    33333445899999996 6677776543  1   111111     223444444211      


Q ss_pred             hh-hhcccHHHHHHHHHhccCCcEEE
Q psy13086         77 YK-WRIINQNLLSEYAYVLSEGGIVY  101 (169)
Q Consensus        77 ~~-~~~~~~~~l~~~~rvLkpGG~l~  101 (169)
                      .. ..-....++.+..|+|||||.++
T Consensus       117 ~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         117 FLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeccchhHHHHHHHHHhccCCCeEEE
Confidence            00 01123678999999999999984

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.95  E-value=2.3e-10  Score=88.32  Aligned_cols=83  Identities=19%  Similarity=0.261  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeC-------CC-Ccccccchhhhcc
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLY-------PD-PHFKRCKYKWRII   82 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f-------~d-~~f~~~h~~~~~~   82 (169)
                      .++.+|||||||+|     +|..  ..+|+++|+++.+++.|++++.. .+.+.+..       ++ ..||.....-.  
T Consensus        69 ~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~-~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a--  143 (224)
T d1vbfa_          69 HKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSY-YNNIKLILGDGTLGYEEEKPYDRVVVWAT--  143 (224)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT-CSSEEEEESCGGGCCGGGCCEEEEEESSB--
T ss_pred             cccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhc-ccccccccCchhhcchhhhhHHHHHhhcc--
Confidence            45789999999999     4444  35899999999999999987551 11111111       10 11222110000  


Q ss_pred             cHHHHHHHHHhccCCcEEEEE
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .+...+.+.+.|||||++++-
T Consensus       144 ~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         144 APTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             BSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhHHHHHhcCCCCEEEEE
Confidence            112334566889999999885

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=1.1e-09  Score=88.35  Aligned_cols=104  Identities=13%  Similarity=0.049  Sum_probs=65.9

Q ss_pred             CCCCeEEEEcCccc---c-cCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEE
Q psy13086         16 EKKVEFVDVGCGKL---Y-LPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFF   65 (169)
Q Consensus        16 ~~~~~iLDiGCG~G---l-a~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~   65 (169)
                      .++.+|||+|||+|   + +......+|+++|+|+.+++.|++|+.                          ..+|.|.+
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            34789999999999   2 222233489999999999999988753                          34666654


Q ss_pred             eCCCCccccc-chhhhc--ccHHHHHHHHHhccCCcEEEEEeCC-----hHHHHHHHHHHhcCC
Q psy13086         66 LYPDPHFKRC-KYKWRI--INQNLLSEYAYVLSEGGIVYTITDV-----KDLHDWIVSHFTEHP  121 (169)
Q Consensus        66 ~f~d~~f~~~-h~~~~~--~~~~~l~~~~rvLkpGG~l~i~~d~-----~~~~~~~~~~~~~~~  121 (169)
                      .-|  .+... ......  ...+++....++|||||.|++++-.     +.+.+.+.+.+...+
T Consensus       224 DpP--~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~g  285 (324)
T d2as0a2         224 DPP--AFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAG  285 (324)
T ss_dssp             CCC--CSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCc--cccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcC
Confidence            322  22110 000000  1256889999999999999998643     334444444444443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=5.5e-10  Score=89.64  Aligned_cols=85  Identities=15%  Similarity=0.208  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--cccceEE--------EeCCCCccccc------c
Q psy13086         17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS--LYLKKMF--------FLYPDPHFKRC------K   76 (169)
Q Consensus        17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~--~~~d~v~--------~~f~d~~f~~~------h   76 (169)
                      ++.+|||||||+|    +|.+....+|+|||.|+.+ ..|++++.  +--+.+.        +.++...++..      +
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~  111 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  111 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence            3678999999999    3333333589999999765 44444322  1111111        12222233321      0


Q ss_pred             hh-hhcccHHHHHHHHHhccCCcEEEE
Q psy13086         77 YK-WRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        77 ~~-~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                      .. ..-..+.++..+.|+|||||.++-
T Consensus       112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         112 CLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            00 011236799999999999999863

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=4.1e-10  Score=86.74  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=33.4

Q ss_pred             CCCCeEEEEcCccc-----ccCc------CCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         16 EKKVEFVDVGCGKL-----YLPM------FPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~------~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      .++.+|||||||+|     ++..      ++..+|++||+++++++.|++++
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l  130 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL  130 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhh
Confidence            35789999999999     3332      35568999999999999998764

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.2e-10  Score=88.19  Aligned_cols=86  Identities=17%  Similarity=0.215  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEE--------EeCCCCccccc------ch
Q psy13086         17 KKVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMF--------FLYPDPHFKRC------KY   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~--------~~f~d~~f~~~------h~   77 (169)
                      ++.+|||||||+|    ++.+....+|+|+|.|+.|+..++.... +..+.+.        +.+++..||..      +.
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~  114 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF  114 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeee
Confidence            4688999999999    3333333589999999988754332211 1111111        12222333321      00


Q ss_pred             -hhhcccHHHHHHHHHhccCCcEEEE
Q psy13086         78 -KWRIINQNLLSEYAYVLSEGGIVYT  102 (169)
Q Consensus        78 -~~~~~~~~~l~~~~rvLkpGG~l~i  102 (169)
                       ...-..+.++....++|||||.++-
T Consensus       115 ~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         115 LLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             BTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccccHHHHHHHHhcCCCCcEEec
Confidence             0011135778888899999999863

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.86  E-value=7.8e-10  Score=86.94  Aligned_cols=74  Identities=9%  Similarity=0.121  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYPDP   70 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~d~   70 (169)
                      ++.+|||+|||+|     +|.. +.++|+++|+|+.+++.|++|+.                     ..+|.|.+..|. 
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~-  184 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV-  184 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS-
T ss_pred             CccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC-
Confidence            4689999999999     4443 55799999999999999998865                     223333332211 


Q ss_pred             cccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         71 HFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        71 ~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                                 ....++.++.++|||||.+++-
T Consensus       185 -----------~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         185 -----------RTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             -----------SGGGGHHHHHHHEEEEEEEEEE
T ss_pred             -----------chHHHHHHHHhhcCCCCEEEEE
Confidence                       0246888899999999998763

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.78  E-value=1.9e-08  Score=80.88  Aligned_cols=102  Identities=13%  Similarity=0.062  Sum_probs=73.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~   65 (169)
                      ..+||.||.|.|     +.+..|..++++||+++.+++.|++.++                           ..+|.|.+
T Consensus        78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~  157 (312)
T d1uira_          78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII  157 (312)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEE
Confidence            578999999999     4445567899999999999999986431                           56888887


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC-----ChHHHHHHHHHHhcC
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD-----VKDLHDWIVSHFTEH  120 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d-----~~~~~~~~~~~~~~~  120 (169)
                      ..+||+-.. .....+...++++.+++.|+|||.++..+.     .......+.+.+.+.
T Consensus       158 D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~  216 (312)
T d1uira_         158 DLTDPVGED-NPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA  216 (312)
T ss_dssp             ECCCCBSTT-CGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT
T ss_pred             eCCCccccc-chhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHh
Confidence            777764321 112345678999999999999999988642     123444455555543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.77  E-value=4.4e-09  Score=77.46  Aligned_cols=78  Identities=13%  Similarity=0.096  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc------------------------cccceEEEeCCC
Q psy13086         17 KKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS------------------------LYLKKMFFLYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~------------------------~~~d~v~~~f~d   69 (169)
                      ++.+|||+|||+|   +.....+++++++|+|+.+++.|++|+.                        ..+|.|+   .|
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If---~D  117 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAF---MA  117 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEE---EC
T ss_pred             CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeE---Ec
Confidence            4689999999999   3222235789999999999999988754                        2455544   34


Q ss_pred             CcccccchhhhcccHHHHHHH--HHhccCCcEEEEEe
Q psy13086         70 PHFKRCKYKWRIINQNLLSEY--AYVLSEGGIVYTIT  104 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~--~rvLkpGG~l~i~~  104 (169)
                      |-+....       .+.+.++  ...|+|||.+++..
T Consensus       118 PPY~~~~-------~~~l~~l~~~~ll~~~g~ivie~  147 (171)
T d1ws6a1         118 PPYAMDL-------AALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             CCTTSCT-------THHHHHHHHHTCEEEEEEEEEEE
T ss_pred             cccccCH-------HHHHHHHHHcCCcCCCeEEEEEe
Confidence            4333211       1223333  35799999998865

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=7.8e-09  Score=80.59  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=36.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ..++||||||+|     ++.+.|+++++|+|+|+.+++.|++|+.
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~  106 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE  106 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHH
Confidence            468999999999     7888899999999999999999998754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=9.9e-09  Score=78.21  Aligned_cols=41  Identities=7%  Similarity=0.075  Sum_probs=34.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +..+|||||||+|     +|...+ +.+++++|+++.+++.|++++.
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~  102 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLN  102 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHH
Confidence            3578999999999     666654 5899999999999999987654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.73  E-value=2.5e-09  Score=81.87  Aligned_cols=86  Identities=12%  Similarity=0.132  Sum_probs=52.7

Q ss_pred             CCCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCC--------Ccccccchhhh
Q psy13086         15 CEKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPD--------PHFKRCKYKWR   80 (169)
Q Consensus        15 ~~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d--------~~f~~~h~~~~   80 (169)
                      +.++.+|||||||+|     +|... +..|++||+++.+++.|++++. ..++.+.+...|        ..||.....-.
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a  154 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAG  154 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecc
Confidence            345789999999999     44433 4679999999999999998875 233333332211        11222110000


Q ss_pred             cccHHHHHHHHHhccCCcEEEEE
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                        .+..-..+...|||||++++.
T Consensus       155 --~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         155 --APKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             --BSSCCHHHHHTEEEEEEEEEE
T ss_pred             --cccCCHHHHHhcCCCCEEEEE
Confidence              011223355679999999874

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.70  E-value=8.4e-09  Score=77.26  Aligned_cols=37  Identities=5%  Similarity=-0.083  Sum_probs=29.1

Q ss_pred             CCeEEEEcCccc-----ccC--------cCCCCcEEEEeCCHHHHHHHHH
Q psy13086         18 KVEFVDVGCGKL-----YLP--------MFPSTLILGLEIRVKVSDYVID   54 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~--------~~p~~~v~GiDis~~~l~~a~~   54 (169)
                      .-+|+++|||||     +|.        .....+++|.|+|+.+++.|++
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            568999999999     321        1123579999999999999974

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.66  E-value=2e-08  Score=72.32  Aligned_cols=77  Identities=17%  Similarity=0.099  Sum_probs=52.0

Q ss_pred             CCeEEEEcCccc---c--cCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------------cccceEEEeCCC
Q psy13086         18 KVEFVDVGCGKL---Y--LPMFPSTLILGLEIRVKVSDYVIDEWS-----------------------LYLKKMFFLYPD   69 (169)
Q Consensus        18 ~~~iLDiGCG~G---l--a~~~p~~~v~GiDis~~~l~~a~~~~~-----------------------~~~d~v~~~f~d   69 (169)
                      +.+|||+|||+|   +  +.+- ..+|++||.++.+++.+++++.                       .++|.|+   .|
T Consensus        15 g~~vlDl~~GtG~~~iea~~rg-a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf---~D   90 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVF---LD   90 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEE---EC
T ss_pred             CCeEEEcCCccCHHHHHHHHhC-cceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeE---ec
Confidence            689999999999   2  2232 2599999999999999987654                       3455443   34


Q ss_pred             CcccccchhhhcccHHHHHHH--HHhccCCcEEEEEe
Q psy13086         70 PHFKRCKYKWRIINQNLLSEY--AYVLSEGGIVYTIT  104 (169)
Q Consensus        70 ~~f~~~h~~~~~~~~~~l~~~--~rvLkpGG~l~i~~  104 (169)
                      |-+....      ....+..+  .++|+|||.+++.+
T Consensus        91 PPy~~~~------~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          91 PPYAKET------IVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             CSSHHHH------HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             hhhccch------HHHHHHHHHHCCCcCCCeEEEEEe
Confidence            4332211      13344444  36799999999864

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.65  E-value=2.1e-08  Score=80.53  Aligned_cols=86  Identities=10%  Similarity=0.106  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEEe
Q psy13086         17 KKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFFL   66 (169)
Q Consensus        17 ~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~~   66 (169)
                      ++.+|||+.||||   ++....+++|++||.|+.+++.|++|+.                           ..+|.|.+.
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD  211 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  211 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence            4679999999999   3333346799999999999999998643                           346666543


Q ss_pred             CCCCcccc--cchhhhc--ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         67 YPDPHFKR--CKYKWRI--INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        67 f~d~~f~~--~h~~~~~--~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                        .|.|..  ......+  ....+++.+.++|+|||.+++.|
T Consensus       212 --PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         212 --PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             --CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             --CCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence              233421  1100000  12457788899999999766654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4.8e-08  Score=74.66  Aligned_cols=76  Identities=13%  Similarity=0.118  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc----------------------------cccce
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS----------------------------LYLKK   62 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~----------------------------~~~d~   62 (169)
                      +..+|||||||+|     +|...| +.+++.+|+++...+.|++++.                            .++|.
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~  138 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV  138 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence            3678999999999     666655 6899999999999999987653                            23443


Q ss_pred             EEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         63 MFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        63 v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      |++..         .+..  ....++.+.+.|+|||.+++-
T Consensus       139 ifiD~---------dk~~--y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         139 AVVDA---------DKEN--CSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             EEECS---------CSTT--HHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeC---------CHHH--HHHHHHHHHHHhcCCcEEEEe
Confidence            33321         1111  256788999999999999874

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.59  E-value=2.2e-08  Score=75.58  Aligned_cols=40  Identities=10%  Similarity=0.149  Sum_probs=32.8

Q ss_pred             CCeEEEEcCccc-c---cCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-Y---LPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-l---a~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.+|||+|||+| +   +......+|+|||+++.+++.|++|+.
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~   92 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG   92 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc
Confidence            688999999999 2   223344589999999999999998865

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.57  E-value=4.3e-08  Score=73.81  Aligned_cols=40  Identities=18%  Similarity=0.341  Sum_probs=32.8

Q ss_pred             CCeEEEEcCccc---c-cCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL---Y-LPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G---l-a~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +.+|||+|||+|   + +.......|+|||+|+.+++.|++|+.
T Consensus        47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~   90 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLG   90 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTG
T ss_pred             CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHH
Confidence            678999999999   2 223344589999999999999998765

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.55  E-value=5.5e-08  Score=78.19  Aligned_cols=88  Identities=14%  Similarity=0.176  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCccc---cc-CcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086         17 KKVEFVDVGCGKL---YL-PMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF   65 (169)
Q Consensus        17 ~~~~iLDiGCG~G---la-~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~   65 (169)
                      ++.+|||+.||+|   ++ .......|++||+|+.+++.|++|+.                           ..+|.|.+
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~  223 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  223 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence            4689999999999   32 33334589999999999999987753                           24565544


Q ss_pred             eCCCCccccc-chhhhc--ccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         66 LYPDPHFKRC-KYKWRI--INQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        66 ~f~d~~f~~~-h~~~~~--~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      .  .|.|... ....+.  ...++++.+.++|+|||.|+++|..
T Consensus       224 D--PP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         224 D--PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             C--CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             c--ChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            3  2333211 000000  1256899999999999999998754

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=1.6e-07  Score=74.84  Aligned_cols=87  Identities=13%  Similarity=0.054  Sum_probs=63.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..+||-||.|.|     +.+..|..++++||+++.+++.|++-++                          ..+|.|.+.
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D  169 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  169 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEc
Confidence            578999999999     4444466799999999999999986321                          568888877


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                      .+||.-..   ...+...++++.+++.|+|||.++..+..+
T Consensus       170 ~~dp~~~~---~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         170 STDPTAGQ---GGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             C-------------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCCCcCc---hhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence            77764221   123456899999999999999999987543

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.54  E-value=1.1e-07  Score=74.84  Aligned_cols=40  Identities=13%  Similarity=0.264  Sum_probs=34.2

Q ss_pred             CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ..++||+|||+|    .+..+|+++|+|+|+|+.+++.|++|+.
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~  154 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAE  154 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHH
Confidence            468999999999    2235799999999999999999998754

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.52  E-value=1.8e-07  Score=73.73  Aligned_cols=84  Identities=14%  Similarity=0.018  Sum_probs=62.1

Q ss_pred             CCeEEEEcCccc----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------------------cccce
Q psy13086         18 KVEFVDVGCGKL----YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------------------------LYLKK   62 (169)
Q Consensus        18 ~~~iLDiGCG~G----la~~~p~~~v~GiDis~~~l~~a~~~~~-------------------------------~~~d~   62 (169)
                      ..+||-||+|.|    ...+++..+++.||+++.+++.|++-.+                               ..+|.
T Consensus        73 p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yDv  152 (276)
T d1mjfa_          73 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDV  152 (276)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEEE
T ss_pred             CceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCCE
Confidence            578999999999    1223455789999999999999975210                               56777


Q ss_pred             EEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         63 MFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        63 v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      |.+..++|.-    ....+...++++.+++.|+|||.++..+.
T Consensus       153 Ii~D~~~~~~----~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         153 IIADSTDPVG----PAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             EEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEeCCCCCC----CcccccCHHHHHhhHhhcCCCceEEEecC
Confidence            7776666531    12345568999999999999999988753

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.45  E-value=4.9e-08  Score=75.72  Aligned_cols=124  Identities=15%  Similarity=0.063  Sum_probs=72.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHH--HhccccceEEEeCCC--Ccccc------cchhhhcc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVID--EWSLYLKKMFFLYPD--PHFKR------CKYKWRII   82 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~--~~~~~~d~v~~~f~d--~~f~~------~h~~~~~~   82 (169)
                      ..+|||||||+|     +++++|+.+++.+|+ +.+++.+..  |+.    .+.-.|-+  |..|.      .|.-..-.
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~----~~~gd~~~~~p~~D~~~l~~vLh~~~de~  156 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIE----HVGGDMFASVPQGDAMILKAVCHNWSDEK  156 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEE----EEECCTTTCCCCEEEEEEESSGGGSCHHH
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeE----EecCCcccccccceEEEEehhhhhCCHHH
Confidence            578999999999     788999999999997 445543321  221    11111111  11111      11111111


Q ss_pred             cHHHHHHHHHhccCCcEEEEEeCC-------hHHHHH---H-HHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHH
Q psy13086         83 NQNLLSEYAYVLSEGGIVYTITDV-------KDLHDW---I-VSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKV  151 (169)
Q Consensus        83 ~~~~l~~~~rvLkpGG~l~i~~d~-------~~~~~~---~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~  151 (169)
                      ...+|+++++.|+|||+++|....       ......   + ...+...++                 ..++..+|+...
T Consensus       157 ~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g-----------------~ert~~e~~~ll  219 (244)
T d1fp1d2         157 CIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGG-----------------RERTEKQYEKLS  219 (244)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSC-----------------CCEEHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCC-----------------cCCCHHHHHHHH
Confidence            357999999999999999997521       111110   0 011111111                 124567899999


Q ss_pred             HHcCCCeEEEEE
Q psy13086        152 TRNKGEKFCAVF  163 (169)
Q Consensus       152 ~~~g~~i~~~~~  163 (169)
                      .+.|....+++-
T Consensus       220 ~~AGF~~v~v~~  231 (244)
T d1fp1d2         220 KLSGFSKFQVAC  231 (244)
T ss_dssp             HHTTCSEEEEEE
T ss_pred             HHcCCCceEEEe
Confidence            999999887653

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.40  E-value=8.7e-07  Score=70.19  Aligned_cols=85  Identities=18%  Similarity=0.102  Sum_probs=65.9

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------------cccceEEE
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------------LYLKKMFF   65 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------------~~~d~v~~   65 (169)
                      ..+||=||-|.|     +.+..|-.++++||+++.+++.|++-.+                           +.+|.|.+
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~  160 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV  160 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred             CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEE
Confidence            578999999999     3344455689999999999999976321                           46888887


Q ss_pred             eCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         66 LYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        66 ~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ...||.-    ....+...++++.+++.|+|||.++..+..
T Consensus       161 D~~dp~~----~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         161 DSSDPIG----PAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             CCCCTTS----GGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             cCCCCCC----cchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            7766642    123456789999999999999999998654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.39  E-value=6.2e-07  Score=70.51  Aligned_cols=98  Identities=18%  Similarity=0.127  Sum_probs=71.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..+||-||-|.|     +.+..+..+++.|||++.+++.|++-.+                          ..+|.|.+.
T Consensus        76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D  155 (274)
T d1iy9a_          76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD  155 (274)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred             cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEc
Confidence            578999999999     3344456799999999999999986321                          568888777


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCCh----HHHHHHHHHHhc
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDVK----DLHDWIVSHFTE  119 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~----~~~~~~~~~~~~  119 (169)
                      .++|.-..    ..+...++++.+.+.|+|||.++..+..+    .....+...+.+
T Consensus       156 ~~~p~~~~----~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~  208 (274)
T d1iy9a_         156 STEPVGPA----VNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKE  208 (274)
T ss_dssp             CSSCCSCC----CCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHT
T ss_pred             CCCCCCcc----hhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhh
Confidence            66664221    23556799999999999999999876432    333444555554

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.36  E-value=5e-07  Score=69.26  Aligned_cols=76  Identities=13%  Similarity=0.062  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCC-CCcEEEEeCCHHHHHHHHHHhc-----------------------------cccc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFP-STLILGLEIRVKVSDYVIDEWS-----------------------------LYLK   61 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p-~~~v~GiDis~~~l~~a~~~~~-----------------------------~~~d   61 (169)
                      +..+|||||+++|     +|...| +.+++.+|+++...+.|++++.                             +.+|
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD  138 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  138 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence            3578999999999     666555 6899999999999999987643                             1355


Q ss_pred             eEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         62 KMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        62 ~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .|++...         +..  ....++.+.+.|+|||.+++-
T Consensus       139 ~iFiDa~---------k~~--y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         139 FIFVDAD---------KDN--YLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             EEEECSC---------STT--HHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEeccc---------hhh--hHHHHHHHHhhcCCCcEEEEc
Confidence            5554211         111  257899999999999999873

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.33  E-value=8.3e-07  Score=71.05  Aligned_cols=85  Identities=16%  Similarity=0.050  Sum_probs=59.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..+||-||-|.|     +.+..|-.+++.||+++.+++.|++-++                          ..+|.|.+.
T Consensus       107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D  186 (312)
T d2b2ca1         107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD  186 (312)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred             CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEc
Confidence            578999999999     3344455699999999999999986431                          568888776


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      .++|.-.    ...+...+|++.+++.|+|||.++..+..
T Consensus       187 ~~dp~~~----~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         187 SSDPVGP----AESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             CC-----------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCCCc----chhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence            6665321    22455689999999999999999998644

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=9.1e-07  Score=69.94  Aligned_cols=85  Identities=12%  Similarity=0.054  Sum_probs=60.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEe
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFL   66 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~   66 (169)
                      ..+||-||-|.|     +.+..+..+++.||+++.+++.|++-++                          ..+|.|.+.
T Consensus        79 pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D  158 (285)
T d2o07a1          79 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD  158 (285)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred             cCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEc
Confidence            578999999999     4444456799999999999999986321                          568888777


Q ss_pred             CCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         67 YPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        67 f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      .++|.-.    ...+...++++.+++.|+|||.+++.+..
T Consensus       159 ~~~p~~~----~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         159 SSDPMGP----AESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             CC---------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCCCc----ccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            6665321    12345678999999999999999987643

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.32  E-value=1.9e-07  Score=72.05  Aligned_cols=126  Identities=14%  Similarity=0.039  Sum_probs=71.7

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccc--------cchhhhcccH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKR--------CKYKWRIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~--------~h~~~~~~~~   84 (169)
                      ..+|||||||+|     +++++|+.++++.|+.. +++.++..-  .+..+.-.|-++.+..        .|.-..-...
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~~~~--r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~  158 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAPSYP--GVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCL  158 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCCCCT--TEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHH
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcccCC--ceEEecccccccCCCcceEEEEEEeecCCHHHHH
Confidence            578999999999     88899999999999864 333332111  1111111121121110        1100000135


Q ss_pred             HHHHHHHHhccCCcEEEEEeCC------hHHHHH---HHH--HHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHH
Q psy13086         85 NLLSEYAYVLSEGGIVYTITDV------KDLHDW---IVS--HFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTR  153 (169)
Q Consensus        85 ~~l~~~~rvLkpGG~l~i~~d~------~~~~~~---~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~  153 (169)
                      .+|+++++.|+|||++.|....      ......   ...  .+....            +    ...++..+|+....+
T Consensus       159 ~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~------------~----g~ert~~e~~~ll~~  222 (243)
T d1kyza2         159 KFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNP------------G----GKERTQKEFEDLAKG  222 (243)
T ss_dssp             HHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCS------------S----CCCEEHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCC------------C----CCcCCHHHHHHHHHH
Confidence            7999999999999999887421      111111   001  111111            0    122456789999999


Q ss_pred             cCCCeEEEE
Q psy13086        154 NKGEKFCAV  162 (169)
Q Consensus       154 ~g~~i~~~~  162 (169)
                      .|....++.
T Consensus       223 AGf~~vkv~  231 (243)
T d1kyza2         223 AGFQGFKVH  231 (243)
T ss_dssp             HCCSCEEEE
T ss_pred             cCCCcEEEE
Confidence            999988765

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=5.4e-07  Score=66.57  Aligned_cols=78  Identities=15%  Similarity=0.165  Sum_probs=52.3

Q ss_pred             CCeEEEEcCccc-cc---CcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCCCc
Q psy13086         18 KVEFVDVGCGKL-YL---PMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPDPH   71 (169)
Q Consensus        18 ~~~iLDiGCG~G-la---~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d~~   71 (169)
                      +.+|||++||+| ++   .......|+.||.+..+++.+++|+.                      ..+|.|   |-||-
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlI---f~DPP  120 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIV---FVDPP  120 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEE---EECCS
T ss_pred             hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEE---EEcCc
Confidence            578999999999 22   11223489999999999999998754                      334443   34443


Q ss_pred             ccccchhhhcccHHHHHHHHH--hccCCcEEEEEe
Q psy13086         72 FKRCKYKWRIINQNLLSEYAY--VLSEGGIVYTIT  104 (169)
Q Consensus        72 f~~~h~~~~~~~~~~l~~~~r--vLkpGG~l~i~~  104 (169)
                      +...      .....+..+.+  +|+++|.+++.+
T Consensus       121 Y~~~------~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         121 FRRG------LLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             SSTT------THHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cccc------hHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            3221      12455666554  699999999865

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.22  E-value=9.3e-07  Score=65.29  Aligned_cols=78  Identities=12%  Similarity=0.081  Sum_probs=52.9

Q ss_pred             CCeEEEEcCccc---c-cCcCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEeC
Q psy13086         18 KVEFVDVGCGKL---Y-LPMFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFLY   67 (169)
Q Consensus        18 ~~~iLDiGCG~G---l-a~~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~f   67 (169)
                      +.+|||++||+|   + |.......|++||.+..+++.+++++.                          ..+|.   .|
T Consensus        42 ~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDl---If  118 (182)
T d2fhpa1          42 GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL---VL  118 (182)
T ss_dssp             SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE---EE
T ss_pred             CCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcce---EE
Confidence            688999999999   2 222223489999999999999987753                          13443   44


Q ss_pred             CCCcccccchhhhcccHHHHHHHH--HhccCCcEEEEEe
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYA--YVLSEGGIVYTIT  104 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~--rvLkpGG~l~i~~  104 (169)
                      -||-+....      ....+..+.  ..|+|+|.+++.+
T Consensus       119 lDPPY~~~~------~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         119 LDPPYAKQE------IVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             ECCCGGGCC------HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             echhhhhhH------HHHHHHHHHHCCCCCCCEEEEEEc
Confidence            555443221      245666664  4699999998864

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.19  E-value=5.3e-07  Score=69.64  Aligned_cols=129  Identities=15%  Similarity=-0.008  Sum_probs=71.5

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCc--ccc------cchhhhcccH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPH--FKR------CKYKWRIINQ   84 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~--f~~------~h~~~~~~~~   84 (169)
                      ..+|||||||+|     +++++|+.+++..|. +.+++.+...  ..+..+.-.|-+++  .|.      .|.-..-...
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~--~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~  157 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS--NNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCL  157 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB--TTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCccc--CceEEEecCcccCCCCCcEEEEEeecccCChHHHH
Confidence            578999999999     778999999999997 4555544211  11111111222222  221      1111111125


Q ss_pred             HHHHHHHHhccCC---cEEEEEeCC----h--HHHHHHHHHHhcCCCceecCccccccCCCCCCCCCCCCHHHHHHHHcC
Q psy13086         85 NLLSEYAYVLSEG---GIVYTITDV----K--DLHDWIVSHFTEHPLFVECDLEELKRTDPVVDKLYQSTEEGQKVTRNK  155 (169)
Q Consensus        85 ~~l~~~~rvLkpG---G~l~i~~d~----~--~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~T~ye~~~~~~g  155 (169)
                      .+|+.+++.|+||   |+++|....    .  .....+...+.-+    ....     +    -..++..+|+....+.|
T Consensus       158 ~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~----m~~~-----~----G~ert~~e~~~ll~~AG  224 (244)
T d1fp2a2         158 RILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVN----MACL-----N----GKERNEEEWKKLFIEAG  224 (244)
T ss_dssp             HHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHH----GGGG-----T----CCCEEHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHH----HHhC-----C----CcCCCHHHHHHHHHHcC
Confidence            6899999999999   777776421    1  1111010000000    0000     0    12356779999999999


Q ss_pred             CCeEEEE
Q psy13086        156 GEKFCAV  162 (169)
Q Consensus       156 ~~i~~~~  162 (169)
                      ....++.
T Consensus       225 f~~~~i~  231 (244)
T d1fp2a2         225 FQHYKIS  231 (244)
T ss_dssp             CCEEEEE
T ss_pred             CceEEEE
Confidence            9987764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.14  E-value=1.6e-06  Score=68.86  Aligned_cols=104  Identities=9%  Similarity=0.051  Sum_probs=63.9

Q ss_pred             CCeEEEEcCccc--c--------cCcCCCCcEEEEeCCHHHHHHHHHHhc-------------------cccceEEEeCC
Q psy13086         18 KVEFVDVGCGKL--Y--------LPMFPSTLILGLEIRVKVSDYVIDEWS-------------------LYLKKMFFLYP   68 (169)
Q Consensus        18 ~~~iLDiGCG~G--l--------a~~~p~~~v~GiDis~~~l~~a~~~~~-------------------~~~d~v~~~f~   68 (169)
                      +.+|||.|||+|  +        ....++.+++|+|+++.+++.|+.++.                   ..+|.|..+-|
T Consensus       118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~NPP  197 (328)
T d2f8la1         118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDLP  197 (328)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEECC
T ss_pred             CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCC
Confidence            568999999999  1        122355689999999999999986543                   34555544322


Q ss_pred             CCcc-cc-c--c------hhhhcccHHHHHHHHHhccCCcEEEEEeCCh----HHHHHHHHHHhcCC
Q psy13086         69 DPHF-KR-C--K------YKWRIINQNLLSEYAYVLSEGGIVYTITDVK----DLHDWIVSHFTEHP  121 (169)
Q Consensus        69 d~~f-~~-~--h------~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~----~~~~~~~~~~~~~~  121 (169)
                      -... .. .  +      .........+++.+.+.|+|||++.+..+..    .....+++.+..+.
T Consensus       198 y~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~  264 (328)
T d2f8la1         198 VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNG  264 (328)
T ss_dssp             CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHE
T ss_pred             CCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCC
Confidence            1100 00 0  0      0000012458999999999999998876432    22444566665543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=4.7e-06  Score=62.83  Aligned_cols=86  Identities=19%  Similarity=0.193  Sum_probs=57.1

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEe-------CCCCcccccchhhhcc-c
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFL-------YPDPHFKRCKYKWRII-N   83 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~-------f~d~~f~~~h~~~~~~-~   83 (169)
                      ..++||||+|.|     +|-.+|+.+++.+|-+.+=+...++-+. -.++.+...       .++..|+..- .|.+. .
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~-sRA~~~~  144 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVI-SRAFASL  144 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEE-CSCSSSH
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceeh-hhhhcCH
Confidence            468999999999     8888999999999999986665554222 122222221       1223343221 12221 3


Q ss_pred             HHHHHHHHHhccCCcEEEEEe
Q psy13086         84 QNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..+++-+...+++||.+++--
T Consensus       145 ~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         145 NDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             HHHHHHHTTSEEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCcEEEEEC
Confidence            678999999999999998864

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.90  E-value=1.2e-06  Score=65.19  Aligned_cols=105  Identities=12%  Similarity=0.101  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCccc-----ccCcC-CCCcEEEEeCCHHHHHHHHHHh-------c----cccceEEEeCCCCccc---c-c
Q psy13086         17 KKVEFVDVGCGKL-----YLPMF-PSTLILGLEIRVKVSDYVIDEW-------S----LYLKKMFFLYPDPHFK---R-C   75 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~-p~~~v~GiDis~~~l~~a~~~~-------~----~~~d~v~~~f~d~~f~---~-~   75 (169)
                      ++.+|||.|||+|     +..+. ....++|+|+++.++..+++..       .    ..+|.+....|.-...   . .
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ii~npP~~~~~~~~~~~   98 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNPPYGIVGEASKYP   98 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCTTTCS
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccccccccceecccCcccccccccccc
Confidence            3679999999999     22333 3467999999998776554321       0    4455544332211000   0 0


Q ss_pred             ---------chh--------hhcccHHHHHHHHHhccCCcEEEEEeCCh----HHHHHHHHHHhcCC
Q psy13086         76 ---------KYK--------WRIINQNLLSEYAYVLSEGGIVYTITDVK----DLHDWIVSHFTEHP  121 (169)
Q Consensus        76 ---------h~~--------~~~~~~~~l~~~~rvLkpGG~l~i~~d~~----~~~~~~~~~~~~~~  121 (169)
                               ...        ..-....+++...+.|||||++.+.++..    .....+++.+.++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~  165 (223)
T d2ih2a1          99 IHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREG  165 (223)
T ss_dssp             BCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred             chhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcC
Confidence                     000        00012468899999999999998886432    23445555555543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=2.1e-05  Score=61.64  Aligned_cols=111  Identities=14%  Similarity=0.205  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCC-
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYP-   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~-   68 (169)
                      ++.+|||+.+|.|     ++....+..++++|+++.-++..++++.                      ..+|.|.+.-| 
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaPC  181 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC  181 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred             ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEeccc
Confidence            4689999999999     6666666899999999987776665433                      34666655322 


Q ss_pred             --------CCccccc---chhhhc--ccHHHHHHHHHhccCCcEEEEEe--CChHHHHHHH-HHHhcCCCceecC
Q psy13086         69 --------DPHFKRC---KYKWRI--INQNLLSEYAYVLSEGGIVYTIT--DVKDLHDWIV-SHFTEHPLFVECD  127 (169)
Q Consensus        69 --------d~~f~~~---h~~~~~--~~~~~l~~~~rvLkpGG~l~i~~--d~~~~~~~~~-~~~~~~~~f~~~~  127 (169)
                              +|.....   ....++  .+.++|+...+.|||||+++-+|  -.+...+... ..+..|+.|+...
T Consensus       182 Sg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~~~  256 (284)
T d1sqga2         182 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCE  256 (284)
T ss_dssp             CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECS
T ss_pred             cccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcEEec
Confidence                    1111000   000111  24679999999999999988775  2233222222 3345678887754

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.83  E-value=3.7e-05  Score=56.61  Aligned_cols=88  Identities=16%  Similarity=0.085  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc----------------------cccceEEEeCCC
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS----------------------LYLKKMFFLYPD   69 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~----------------------~~~d~v~~~f~d   69 (169)
                      ++..++|..||.|     +...  +.+|+|+|..+.+++.|++...                      ..+|.|.+.+.-
T Consensus        18 ~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGv   95 (182)
T d1wg8a2          18 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGV   95 (182)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred             CCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEccC
Confidence            3689999999999     3333  4699999999999999986321                      456666554321


Q ss_pred             Ccccccchhhhc-ccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         70 PHFKRCKYKWRI-INQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        70 ~~f~~~h~~~~~-~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                      ..+......+.+ .....|.....+|+|||.+.+.+-.
T Consensus        96 Ss~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh  133 (182)
T d1wg8a2          96 SSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH  133 (182)
T ss_dssp             CHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             CHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence            111100111111 1245889999999999999998754

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.83  E-value=1.7e-05  Score=64.67  Aligned_cols=79  Identities=15%  Similarity=0.103  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-c--------------------------------
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-L--------------------------------   58 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~--------------------------------   58 (169)
                      ++.+|||..||+|     .|.+.+...|+..|+|+.+++.+++|+. +                                
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            3678999999999     4454566689999999999999998864 1                                


Q ss_pred             ----ccceEEEeCCCCcccccchhhhcccHHHHHHHHHhccCCcEEEEE-eCCh
Q psy13086         59 ----YLKKMFFLYPDPHFKRCKYKWRIINQNLLSEYAYVLSEGGIVYTI-TDVK  107 (169)
Q Consensus        59 ----~~d~v~~~f~d~~f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~-~d~~  107 (169)
                          .+|.|.+   || |.        ....+++...+.++.||.|.++ ||..
T Consensus       125 ~~~~~fDvIDi---DP-fG--------s~~pfldsAi~a~~~~Gll~vTaTD~a  166 (375)
T d2dula1         125 ERHRYFHFIDL---DP-FG--------SPMEFLDTALRSAKRRGILGVTATDGA  166 (375)
T ss_dssp             HSTTCEEEEEE---CC-SS--------CCHHHHHHHHHHEEEEEEEEEEECCHH
T ss_pred             hhcCcCCcccC---CC-CC--------CcHHHHHHHHHHhccCCEEEEEecCch
Confidence                1222222   11 11        0257999999999999999997 4543

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=0.00019  Score=57.04  Aligned_cols=97  Identities=14%  Similarity=0.089  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc-cccceEEEeCCCC------------cccccch-
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS-LYLKKMFFLYPDP------------HFKRCKY-   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~-~~~d~v~~~f~d~------------~f~~~h~-   77 (169)
                      +..+|||+-||+|     ||+.  ..+|+|||+++.+++.|++++. +.++.+.....+.            .++..-. 
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD  289 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  289 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC
Confidence            4678999999999     5543  3699999999999999998765 3333332211100            0010000 


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHH
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSH  116 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~  116 (169)
                      -.|-=..+.++.+.+ ++|.=.+|++++..+++..+...
T Consensus       290 PPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l  327 (358)
T d1uwva2         290 PARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEAL  327 (358)
T ss_dssp             CCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHH
Confidence            000001457777765 47888999998877777755543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.65  E-value=5.4e-05  Score=58.08  Aligned_cols=84  Identities=13%  Similarity=0.140  Sum_probs=54.0

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHH---HHhccccceEEEeC------C--C---Ccccccchh
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVI---DEWSLYLKKMFFLY------P--D---PHFKRCKYK   78 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~---~~~~~~~d~v~~~f------~--d---~~f~~~h~~   78 (169)
                      ..+++|||+|.|     +|-.+|+.+++-+|-+.+=+...+   +.+.  ++.+.+..      .  .   ..||..- .
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~--L~n~~i~~~R~E~~~~~~~~~~~~D~v~-s  147 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ--LENTTFCHDRAETFGQRKDVRESYDIVT-A  147 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT--CSSEEEEESCHHHHTTCTTTTTCEEEEE-E
T ss_pred             CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC--CCCcEEEeehhhhccccccccccceEEE-E
Confidence            568999999999     788899999999999987555543   3332  22211110      0  0   0122111 1


Q ss_pred             hhcc-cHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 WRII-NQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 ~~~~-~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      |.+. ...+++-....+++||.+++.-
T Consensus       148 RAva~l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         148 RAVARLSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             ECCSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hhhhCHHHHHHHHhhhcccCCEEEEEC
Confidence            1111 3679999999999999998864

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.64  E-value=1.8e-05  Score=60.54  Aligned_cols=40  Identities=15%  Similarity=0.296  Sum_probs=33.4

Q ss_pred             CCCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++..|||||||+|     |+..  ..++++||+++.+++.++++..
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~   64 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLV   64 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhh
Confidence            35789999999999     5443  3689999999999999988764

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.63  E-value=5.1e-05  Score=55.52  Aligned_cols=78  Identities=17%  Similarity=0.183  Sum_probs=52.6

Q ss_pred             CCeEEEEcCccc---ccC-cCCCCcEEEEeCCHHHHHHHHHHhc--------------------------cccceEEEeC
Q psy13086         18 KVEFVDVGCGKL---YLP-MFPSTLILGLEIRVKVSDYVIDEWS--------------------------LYLKKMFFLY   67 (169)
Q Consensus        18 ~~~iLDiGCG~G---la~-~~p~~~v~GiDis~~~l~~a~~~~~--------------------------~~~d~v~~~f   67 (169)
                      +.++||+-||||   +.. ......++.||.+..+++.+++|+.                          ..+|   +.|
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fD---lIF  120 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFD---VVF  120 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEE---EEE
T ss_pred             cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCccc---EEE
Confidence            568999999999   222 1223499999999999999987754                          1233   344


Q ss_pred             CCCcccccchhhhcccHHHHHHHHH--hccCCcEEEEEe
Q psy13086         68 PDPHFKRCKYKWRIINQNLLSEYAY--VLSEGGIVYTIT  104 (169)
Q Consensus        68 ~d~~f~~~h~~~~~~~~~~l~~~~r--vLkpGG~l~i~~  104 (169)
                      -||-+....      ....++.+..  +|+++|.+++.+
T Consensus       121 lDPPY~~~~------~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         121 LDPPFHFNL------AEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             ECCCSSSCH------HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             echhHhhhh------HHHHHHHHHHhCCcCCCcEEEEEe
Confidence            455443211      2456666654  799999999865

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=0.00023  Score=52.02  Aligned_cols=99  Identities=12%  Similarity=0.016  Sum_probs=54.6

Q ss_pred             CCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHH-----------------HHHHHHHHhc-cccceEEEeCCCCccc
Q psy13086         18 KVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVK-----------------VSDYVIDEWS-LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~-----------------~l~~a~~~~~-~~~d~v~~~f~d~~f~   73 (169)
                      +.+||||||+.|     ++.. .+...++|+|+.+-                 .......... ..+|.|..   |-.++
T Consensus        23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlS---D~ap~   99 (180)
T d1ej0a_          23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS---DMAPN   99 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE---CCCCC
T ss_pred             CCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEEEe---cccch
Confidence            678999999999     3332 34578999998761                 0000011111 45666543   32222


Q ss_pred             c------cchhhhcccHHHHHHHHHhccCCcEEEEEeCChHHHHHHHHHHhc
Q psy13086         74 R------CKYKWRIINQNLLSEYAYVLSEGGIVYTITDVKDLHDWIVSHFTE  119 (169)
Q Consensus        74 ~------~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~~~~~~~~~~~~  119 (169)
                      .      .|...--.....+.-+.++||+||.|++..-.......+...+..
T Consensus       100 ~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~  151 (180)
T d1ej0a_         100 MSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh
Confidence            1      111100013567788889999999999986322222234444443

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.51  E-value=0.00019  Score=56.74  Aligned_cols=88  Identities=16%  Similarity=0.118  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCC-
Q psy13086         17 KKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYP-   68 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~-   68 (169)
                      ++.+|||+.||.|     ++.. .....++++|+++.-+..+++++.                     ..+|.|.+.-| 
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaPC  195 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC  195 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcccc
Confidence            4689999999999     5443 345789999999987777765433                     34566654322 


Q ss_pred             -C-Ccc----cc--cchh---hhc--ccHHHHHHHHHhccCCcEEEEEe
Q psy13086         69 -D-PHF----KR--CKYK---WRI--INQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        69 -d-~~f----~~--~h~~---~~~--~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       . ...    +.  ....   ..+  .+.+++....+.|||||+++-+|
T Consensus       196 Sg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT  244 (313)
T d1ixka_         196 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  244 (313)
T ss_dssp             TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence             1 000    00  0000   011  24679999999999999887775

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.36  E-value=5.5e-05  Score=57.68  Aligned_cols=33  Identities=12%  Similarity=0.188  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCccc-----cc----CcCCCCcEEEEeCCHHHH
Q psy13086         17 KKVEFVDVGCGKL-----YL----PMFPSTLILGLEIRVKVS   49 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la----~~~p~~~v~GiDis~~~l   49 (169)
                      |+.+|||||++.|     ++    ...++.+++|+|+.+...
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~  121 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC  121 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhh
Confidence            4678999999999     23    234678999999987543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.19  E-value=6.5e-06  Score=63.50  Aligned_cols=39  Identities=13%  Similarity=0.245  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++..|||||||+|     |++.  ..++++||+++.|++.++++..
T Consensus        29 ~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~   72 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK   72 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT
T ss_pred             CCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhh
Confidence            4688999999999     4443  4689999999999988876654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00016  Score=55.64  Aligned_cols=38  Identities=13%  Similarity=0.077  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHh
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEW   56 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~   56 (169)
                      ++..|||||||+|     |++.  ..++++||+++.+++..+++.
T Consensus        21 ~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~   63 (252)
T d1qyra_          21 KGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHP   63 (252)
T ss_dssp             TTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCT
T ss_pred             CCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHh
Confidence            3678999999999     5544  368999999999999987643

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00066  Score=52.85  Aligned_cols=39  Identities=13%  Similarity=0.143  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++..|||||+|+|     |+..  ..++++||+++.+++..+++..
T Consensus        21 ~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~   64 (278)
T d1zq9a1          21 PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQ   64 (278)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHh
Confidence            4688999999999     4444  3599999999999999988764

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0021  Score=50.06  Aligned_cols=41  Identities=7%  Similarity=0.031  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCccc-----ccCc-CCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         17 KKVEFVDVGCGKL-----YLPM-FPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        17 ~~~~iLDiGCG~G-----la~~-~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      ++.+|||+.||.|     +|.. .+...++++|+++.-++.+++++.
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~  140 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLA  140 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH
T ss_pred             ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHH
Confidence            4688999999999     5543 356789999999988777776543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.69  E-value=0.001  Score=51.03  Aligned_cols=84  Identities=13%  Similarity=0.003  Sum_probs=46.6

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHH-----HH-HHHHHHhc-------------cccceEEEeCC--CCc
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVK-----VS-DYVIDEWS-------------LYLKKMFFLYP--DPH   71 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~-----~l-~~a~~~~~-------------~~~d~v~~~f~--d~~   71 (169)
                      ..+|+|+|||.|     ++.+.+...+.|+++--.     +. +..-.++-             ..+|.+...-.  ++.
T Consensus        67 ~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D~vlcDm~ess~~  146 (257)
T d2p41a1          67 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGESSPN  146 (257)
T ss_dssp             CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCCSS
T ss_pred             CCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCCEEEeeCCCCCCC
Confidence            578999999999     555545567777777421     10 00000110             34554443221  111


Q ss_pred             ccccchhhhcccHHHHHHHHHhccCCcEEEEEeC
Q psy13086         72 FKRCKYKWRIINQNLLSEYAYVLSEGGIVYTITD  105 (169)
Q Consensus        72 f~~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~d  105 (169)
                      ....+ .|.   -.+++.+.+.|+|||.|++..-
T Consensus       147 ~~vd~-~Rt---l~vLela~~wLk~gg~FvvKVl  176 (257)
T d2p41a1         147 PTVEA-GRT---LRVLNLVENWLSNNTQFCVKVL  176 (257)
T ss_dssp             HHHHH-HHH---HHHHHHHHHHCCTTCEEEEEES
T ss_pred             chhhh-hhH---HHHHHHHHHHcccCCEEEEEEC
Confidence            11111 121   3578888899999999988743

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.63  E-value=0.0014  Score=53.29  Aligned_cols=103  Identities=12%  Similarity=0.053  Sum_probs=60.1

Q ss_pred             CCeEEEEcCccc--c-------cCcCC---------CCcEEEEeCCHHHHHHHHHHhc----------------------
Q psy13086         18 KVEFVDVGCGKL--Y-------LPMFP---------STLILGLEIRVKVSDYVIDEWS----------------------   57 (169)
Q Consensus        18 ~~~iLDiGCG~G--l-------a~~~p---------~~~v~GiDis~~~l~~a~~~~~----------------------   57 (169)
                      ..+|+|-.||+|  |       .....         ..++.|+|+++.+...|+-++-                      
T Consensus       163 ~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~~~  242 (425)
T d2okca1         163 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS  242 (425)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS
T ss_pred             cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhhcc
Confidence            578999999999  1       11111         2469999999999998875432                      


Q ss_pred             cccceEEEeCCC--Ccccccchh-------hhcccHHHHHHHHHhccCCcEEEEEeCChH-----HHHHHHHHHhcC
Q psy13086         58 LYLKKMFFLYPD--PHFKRCKYK-------WRIINQNLLSEYAYVLSEGGIVYTITDVKD-----LHDWIVSHFTEH  120 (169)
Q Consensus        58 ~~~d~v~~~f~d--~~f~~~h~~-------~~~~~~~~l~~~~rvLkpGG~l~i~~d~~~-----~~~~~~~~~~~~  120 (169)
                      ..+|.|..+-|-  .+.+.....       ..-....++..+...|++||++.++.+...     ....+++.+.++
T Consensus       243 ~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~  319 (425)
T d2okca1         243 TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQD  319 (425)
T ss_dssp             SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHH
T ss_pred             cccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHHh
Confidence            345554432111  111100000       000124599999999999999988865322     233455555444

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0032  Score=52.63  Aligned_cols=86  Identities=12%  Similarity=0.059  Sum_probs=53.6

Q ss_pred             CCeEEEEcCccc--c-------cCcCC--------------CCcEEEEeCCHHHHHHHHHHhc-----------------
Q psy13086         18 KVEFVDVGCGKL--Y-------LPMFP--------------STLILGLEIRVKVSDYVIDEWS-----------------   57 (169)
Q Consensus        18 ~~~iLDiGCG~G--l-------a~~~p--------------~~~v~GiDis~~~l~~a~~~~~-----------------   57 (169)
                      +.+|+|-.||+|  |       .....              ...++|+|+++.+...|+-++-                 
T Consensus       165 ~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~  244 (524)
T d2ar0a1         165 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG  244 (524)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred             chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhh
Confidence            578999999999  1       11111              1269999999999988875421                 


Q ss_pred             ----------cccceEEEeCCCCcccccchh---------hhcccHHHHHHHHHhccCCcEEEEEeCC
Q psy13086         58 ----------LYLKKMFFLYPDPHFKRCKYK---------WRIINQNLLSEYAYVLSEGGIVYTITDV  106 (169)
Q Consensus        58 ----------~~~d~v~~~f~d~~f~~~h~~---------~~~~~~~~l~~~~rvLkpGG~l~i~~d~  106 (169)
                                ..+|.|..   +|-|......         ..-..-.|+..+.+.|||||++.++.+.
T Consensus       245 ~~l~~d~~~~~kfD~Ii~---NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~  309 (524)
T d2ar0a1         245 NTLGSDGENLPKAHIVAT---NPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  309 (524)
T ss_dssp             CTTSHHHHTSCCEEEEEE---CCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             hhhhhcccccccceeEEe---cCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence                      22444432   2322211000         0000135999999999999999988653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.07  E-value=0.0095  Score=43.29  Aligned_cols=88  Identities=6%  Similarity=-0.121  Sum_probs=55.1

Q ss_pred             CCCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhc---------------------cccceEEEeCC
Q psy13086         16 EKKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWS---------------------LYLKKMFFLYP   68 (169)
Q Consensus        16 ~~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~---------------------~~~d~v~~~f~   68 (169)
                      .++.+||-+|||..      +++......|+++|.++.-++.|++.-.                     ..+|.+.-...
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG  103 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  103 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence            34789999999984      4555556699999999999999876311                     12343321111


Q ss_pred             CCcccccchh-hhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         69 DPHFKRCKYK-WRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        69 d~~f~~~h~~-~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .+.....+.. ........++...++++|||++.+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2         104 FEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             TTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             ccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            0100000100 0111357899999999999999886

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.49  E-value=0.015  Score=41.27  Aligned_cols=84  Identities=11%  Similarity=-0.046  Sum_probs=49.9

Q ss_pred             CCCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccc-cchh--------hh
Q psy13086         16 EKKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKR-CKYK--------WR   80 (169)
Q Consensus        16 ~~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~-~h~~--------~~   80 (169)
                      .++.+||=+|||. |     +++...-.+|+++|.+++-++.|++--   .|.+ +.+.+..+.. ....        -.
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lG---a~~v-i~~~~~~~~~~~~~i~~~~~~~g~D  102 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG---ADLT-LNRRETSVEERRKAIMDITHGRGAD  102 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT---CSEE-EETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccccccccccccc---ceEE-EeccccchHHHHHHHHHhhCCCCce
Confidence            3468999999973 3     555543348999999999998887531   1111 1221111000 0000        00


Q ss_pred             c-----ccHHHHHHHHHhccCCcEEEEE
Q psy13086         81 I-----INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        81 ~-----~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      +     -.+..++...+.|+|||++++.
T Consensus       103 vvid~vG~~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         103 FILEATGDSRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             EEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred             EEeecCCchhHHHHHHHHhcCCCEEEEE
Confidence            0     0245788889999999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.49  E-value=0.017  Score=41.01  Aligned_cols=84  Identities=18%  Similarity=0.130  Sum_probs=49.2

Q ss_pred             CCCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcc-cccch----------h
Q psy13086         16 EKKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHF-KRCKY----------K   78 (169)
Q Consensus        16 ~~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f-~~~h~----------~   78 (169)
                      .++.+||=+|||. |     +++.....+|+++|.+++-++.|++-=   .+.+ +.+.+..+ +....          .
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lG---a~~~-i~~~~~~~~~~v~~~t~g~G~D~vi  101 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYG---ATDI-LNYKNGHIEDQVMKLTNGKGVDRVI  101 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHT---CSEE-ECGGGSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhC---cccc-ccccchhHHHHHHHHhhccCcceEE
Confidence            3467888899985 4     555443348999999998888887521   1111 11111111 00000          0


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ...-.+..+++..+.|+|+|++.+.
T Consensus       102 d~~g~~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2         102 MAGGGSETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             ECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred             EccCCHHHHHHHHHHHhcCCEEEEE
Confidence            0000246788888999999999885

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.041  Score=38.39  Aligned_cols=84  Identities=7%  Similarity=0.016  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccccch--------h----
Q psy13086         17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKY--------K----   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~h~--------~----   78 (169)
                      ++.+||=+|||..      +++.....+|+++|.++.-++.|++-   ..|.+.. ..+..+.....        .    
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~---Ga~~~~~-~~~~~~~~~~~~~~~~~g~g~Dvv  101 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI---GADLVLQ-ISKESPQEIARKVEGQLGCKPEVT  101 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---TCSEEEE-CSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh---CCccccc-ccccccccccccccccCCCCceEE
Confidence            3678999999876      55555445899999999999888753   1222111 11111100000        0    


Q ss_pred             -hhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         79 -WRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        79 -~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       ...-.+..++...+.+++||++++..
T Consensus       102 id~~G~~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2         102 IECTGAEASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             EECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             EeccCCchhHHHHHHHhcCCCEEEEEe
Confidence             00013678999999999999998863

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.97  E-value=0.037  Score=38.44  Aligned_cols=84  Identities=7%  Similarity=0.011  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCC-cccc----cch--------
Q psy13086         17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDP-HFKR----CKY--------   77 (169)
Q Consensus        17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~-~f~~----~h~--------   77 (169)
                      ++.+||=+|||.-      +++. .+++++++|.++.-++.|++--   .+......+.. ..+.    ...        
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~-~Ga~vi~v~~~~~r~~~a~~~g---a~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~  101 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKA-YGAFVVCTARSPRRLEVAKNCG---ADVTLVVDPAKEEESSIIERIRSAIGDLPNV  101 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTT---CSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CCCEEEEEcccccchhhHhhHhh-hcccccccchHHHHHHHHHHcC---CcEEEeccccccccchhhhhhhcccccCCce
Confidence            4678898999843      4444 4579999999999888887631   11111111100 0000    000        


Q ss_pred             -hhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         78 -KWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        78 -~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                       ....-.+..++...+.|+|+|++.+..
T Consensus       102 vid~~g~~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2         102 TIDCSGNEKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             EEECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             eeecCCChHHHHHHHHHHhcCCceEEEe
Confidence             000013678999999999999998863

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.86  E-value=0.0069  Score=46.01  Aligned_cols=42  Identities=14%  Similarity=0.038  Sum_probs=35.8

Q ss_pred             CCCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         16 EKKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        16 ~~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++..|||-=||+|   +|...-+.+++|+|+++..++.|++|+.
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGS
T ss_pred             cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHH
Confidence            45789999999999   4444457899999999999999998875

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.62  E-value=0.01  Score=43.75  Aligned_cols=42  Identities=7%  Similarity=-0.037  Sum_probs=35.6

Q ss_pred             CCCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         16 EKKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        16 ~~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++..|||-=||+|   .|...-+.+++|+|++++.++.|++|+.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            45789999999999   5554456899999999999999999873

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.48  E-value=0.013  Score=45.95  Aligned_cols=40  Identities=13%  Similarity=0.100  Sum_probs=30.9

Q ss_pred             CCeEEEEcCccc-cc----CcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         18 KVEFVDVGCGKL-YL----PMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        18 ~~~iLDiGCG~G-la----~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      +..|||||+|.| +.    ......++++||+++..++..++...
T Consensus        44 ~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~   88 (322)
T d1i4wa_          44 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE   88 (322)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence            678999999999 33    22222489999999999998887654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.91  E-value=0.082  Score=37.31  Aligned_cols=86  Identities=9%  Similarity=-0.092  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcCcc-c-----ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCC-cccc-c--------ch-h
Q psy13086         16 EKKVEFVDVGCGK-L-----YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDP-HFKR-C--------KY-K   78 (169)
Q Consensus        16 ~~~~~iLDiGCG~-G-----la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~-~f~~-~--------h~-~   78 (169)
                      +++.+||=+|||. |     +++......|+.+|.++.-++.|++--   .+.+.-....+ .... .        +. .
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~G---a~~~i~~~~~~~~~~~~~~~~~~~G~d~vi  103 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG---ATDCLNPRELDKPVQDVITELTAGGVDYSL  103 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT---CSEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhC---CCcccCCccchhhhhhhHhhhhcCCCcEEE
Confidence            4578899999988 4     555555558999999998888887631   11111000101 0000 0        00 0


Q ss_pred             hhcccHHHHHHHHHhccCC-cEEEEEe
Q psy13086         79 WRIINQNLLSEYAYVLSEG-GIVYTIT  104 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpG-G~l~i~~  104 (169)
                      ...-.+..+++..+.|+|| |++.+.-
T Consensus       104 e~~G~~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         104 DCAGTAQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             ESSCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             EecccchHHHHHHHHhhcCCeEEEecC
Confidence            0001367899999999997 9998863

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.90  E-value=0.05  Score=37.70  Aligned_cols=87  Identities=17%  Similarity=0.095  Sum_probs=55.6

Q ss_pred             eEEEEcCcc-c------ccCcCCCCcEEEEeCCHHHHHHHHHHhc-------------cccceEEEeCCCCcccccchhh
Q psy13086         20 EFVDVGCGK-L------YLPMFPSTLILGLEIRVKVSDYVIDEWS-------------LYLKKMFFLYPDPHFKRCKYKW   79 (169)
Q Consensus        20 ~iLDiGCG~-G------la~~~p~~~v~GiDis~~~l~~a~~~~~-------------~~~d~v~~~f~d~~f~~~h~~~   79 (169)
                      +|+=||||. |      |.+..++.+|+|+|.++..++.|++.-.             ...|.+.+.-|...        
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~--------   74 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT--------   74 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHH--------
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchh--------
Confidence            477799987 5      3344456789999999999999987521             23444444333211        


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEEeCC-hHHHHHHHHHH
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTITDV-KDLHDWIVSHF  117 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~~d~-~~~~~~~~~~~  117 (169)
                         ...+++++...++++-.+.-++.. ....+.+...+
T Consensus        75 ---~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~  110 (171)
T d2g5ca2          75 ---FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL  110 (171)
T ss_dssp             ---HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred             ---hhhhhhhhhccccccccccccccccHHHHHHHHHhh
Confidence               246889999999998877655443 33344444444

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.74  E-value=0.056  Score=37.92  Aligned_cols=84  Identities=11%  Similarity=0.078  Sum_probs=52.1

Q ss_pred             CCCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCccccc---------ch-hh
Q psy13086         16 EKKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRC---------KY-KW   79 (169)
Q Consensus        16 ~~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~---------h~-~~   79 (169)
                      +++.+||=+|||.-      +++......++.+|.++.-++.|++--   .+.+ +.+.++.+...         +. ..
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G---a~~~-i~~~~~~~~~~i~~~t~gg~D~vid  102 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG---ATHV-INSKTQDPVAAIKEITDGGVNFALE  102 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT---CSEE-EETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC---CeEE-EeCCCcCHHHHHHHHcCCCCcEEEE
Confidence            44788999999754      555555568889999998888887531   1221 12222211100         00 00


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEE
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ..-.+..++...++++|+|++.+.
T Consensus       103 ~~G~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2         103 STGSPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             CSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred             cCCcHHHHHHHHhcccCceEEEEE
Confidence            001367899999999999999885

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.42  E-value=0.066  Score=37.34  Aligned_cols=83  Identities=13%  Similarity=0.098  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccccch----------hhh
Q psy13086         17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKY----------KWR   80 (169)
Q Consensus        17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~h~----------~~~   80 (169)
                      ++.+||=+|||..      +++......++++|.+++-++.+++--   .|.+ +...+........          ...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g---a~~~-i~~~~~~~~~~~~~~~~~g~d~vid~  107 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG---ADHV-VDARRDPVKQVMELTRGRGVNVAMDF  107 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT---CSEE-EETTSCHHHHHHHHTTTCCEEEEEES
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc---ccee-ecCcccHHHHHHHhhCCCCceEEEEe
Confidence            3678999999876      455555568999999998888777531   1221 1222211110000          000


Q ss_pred             cccHHHHHHHHHhccCCcEEEEE
Q psy13086         81 IINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        81 ~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .-....++...+.|++||++.+.
T Consensus       108 ~g~~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         108 VGSQATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             SCCHHHHHHGGGGEEEEEEEEEC
T ss_pred             cCcchHHHHHHHHHhCCCEEEEE
Confidence            01356899999999999999985

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.14  E-value=0.018  Score=42.84  Aligned_cols=42  Identities=7%  Similarity=0.042  Sum_probs=35.7

Q ss_pred             CCCCeEEEEcCccc---ccCcCCCCcEEEEeCCHHHHHHHHHHhc
Q psy13086         16 EKKVEFVDVGCGKL---YLPMFPSTLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        16 ~~~~~iLDiGCG~G---la~~~p~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++..|||-=||+|   +|...-+.+++|+|+++..++.|++|+.
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~  250 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLT  250 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHH
T ss_pred             CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence            34789999999999   5544456799999999999999999886

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.54  E-value=0.16  Score=35.66  Aligned_cols=40  Identities=13%  Similarity=0.143  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHH
Q psy13086         16 EKKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDE   55 (169)
Q Consensus        16 ~~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~   55 (169)
                      .++.+||=+|||..      +++.....+|+++|.+++-++.|++-
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            45789999999876      44555557999999999999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.31  E-value=0.014  Score=40.94  Aligned_cols=75  Identities=8%  Similarity=0.000  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhc-----------------cccceEEEeCCCCccc
Q psy13086         17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWS-----------------LYLKKMFFLYPDPHFK   73 (169)
Q Consensus        17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~-----------------~~~d~v~~~f~d~~f~   73 (169)
                      ++.+||-+|||.-      +++. .+++++++|.|+.-++.|++--.                 ..+|.+.-....+   
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~-~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~---  102 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKA-MGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL---  102 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS---
T ss_pred             CCCEEEEECCCCcchhHHHHhhh-ccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC---
Confidence            4788999999833      4444 46899999999998888875210                 2233332111111   


Q ss_pred             ccchhhhcccHHHHHHHHHhccCCcEEEEEe
Q psy13086         74 RCKYKWRIINQNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        74 ~~h~~~~~~~~~~l~~~~rvLkpGG~l~i~~  104 (169)
                               ....+....+.|+|+|++++..
T Consensus       103 ---------~~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         103 ---------TDIDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             ---------TTCCTTTGGGGEEEEEEEEECC
T ss_pred             ---------ccchHHHHHHHhhccceEEEec
Confidence                     0113456679999999998863

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.22  Score=34.53  Aligned_cols=83  Identities=16%  Similarity=0.100  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCccccc----------chh
Q psy13086         16 EKKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRC----------KYK   78 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~----------h~~   78 (169)
                      .++.+||=.|++.|       +++. -++++++++-|++-.+.+++-   ..|.+ +.+.++.+...          +..
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~-~G~~vi~~~~~~~~~~~~~~~---Ga~~v-i~~~~~~~~~~i~~~t~~~g~d~v  101 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARA-YGLKILGTAGTEEGQKIVLQN---GAHEV-FNHREVNYIDKIKKYVGEKGIDII  101 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHT---TCSEE-EETTSTTHHHHHHHHHCTTCEEEE
T ss_pred             CCCCEEEEEeccccccccccccccc-cCccccccccccccccccccc---Ccccc-cccccccHHHHhhhhhccCCceEE
Confidence            45789999998545       4544 367999999898877777652   22332 23333322110          000


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      -..+....++...++|+|+|+++..
T Consensus       102 ~d~~g~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         102 IEMLANVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             EESCHHHHHHHHHHHEEEEEEEEEC
T ss_pred             eecccHHHHHHHHhccCCCCEEEEE
Confidence            0011256888999999999999875

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.89  E-value=0.12  Score=35.72  Aligned_cols=83  Identities=13%  Similarity=0.045  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccccch-------h----
Q psy13086         17 KKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRCKY-------K----   78 (169)
Q Consensus        17 ~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~h~-------~----   78 (169)
                      ++.+||=+|||.|       ++.......|+++|.+++-++.+++-   ..+. .+...++.+.....       .    
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~---Ga~~-~i~~~~~~~~~~~~~~~~~~~~d~vi  102 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA---GADY-VINASMQDPLAEIRRITESKGVDAVI  102 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH---TCSE-EEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc---CCce-eeccCCcCHHHHHHHHhhcccchhhh
Confidence            4688999998544       34444557999999999888877653   1111 11222211100000       0    


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ...-.+..++...+.|+|||++++.
T Consensus       103 d~~g~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2         103 DLNNSEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             ESCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred             cccccchHHHhhhhhcccCCEEEEe
Confidence            0001367888889999999999886

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.13  E-value=0.3  Score=33.38  Aligned_cols=82  Identities=9%  Similarity=0.001  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCcccc-c--------chhhhc
Q psy13086         17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKR-C--------KYKWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~-~--------h~~~~~   81 (169)
                      ++.+||=+|||.=      +++.. +.+++++|.++.-++.|++-   ..|.+ +.+.+..+.. .        ...-..
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~---Ga~~~-i~~~~~~~~~~~~~~~~g~~~~i~~~  101 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKL---GASLT-VNARQEDPVEAIQRDIGGAHGVLVTA  101 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT---TCSEE-EETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred             CCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhcc---Ccccc-ccccchhHHHHHHHhhcCCccccccc
Confidence            3677888998654      55554 58999999999888888753   12221 1222211100 0        000011


Q ss_pred             ccHHHHHHHHHhccCCcEEEEE
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .....++...+.|+|||++++.
T Consensus       102 ~~~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2         102 VSNSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             SCHHHHHHHHTTEEEEEEEEEC
T ss_pred             ccchHHHHHHHHhcCCcEEEEE
Confidence            2367888999999999999885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.01  E-value=0.42  Score=32.42  Aligned_cols=82  Identities=9%  Similarity=0.011  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCccccc-----c----hhhhc
Q psy13086         17 KKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRC-----K----YKWRI   81 (169)
Q Consensus        17 ~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~-----h----~~~~~   81 (169)
                      ++.+||=.|||.-      +++. .+++++++|.++.-++.+++--   .+.+ +.+.+..+...     +    ..-..
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~G---a~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~  101 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELG---ADLV-VNPLKEDAAKFMKEKVGGVHAAVVTA  101 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTT---CSEE-ECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred             CCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcC---ccee-cccccchhhhhcccccCCCceEEeec
Confidence            4678888998776      4444 4568999999999888887631   1111 11111111000     0    00001


Q ss_pred             ccHHHHHHHHHhccCCcEEEEE
Q psy13086         82 INQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        82 ~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      .....+....+.|+|||++++.
T Consensus       102 ~~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2         102 VSKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHhccCCceEec
Confidence            2467899999999999999886

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=88.97  E-value=0.5  Score=32.83  Aligned_cols=39  Identities=13%  Similarity=0.074  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086         16 EKKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVID   54 (169)
Q Consensus        16 ~~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~   54 (169)
                      .++.+||=+|||..      +++.....+|+++|.++.-++.|++
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            45789999999866      4444455689999999999998876

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.53  E-value=0.62  Score=31.79  Aligned_cols=84  Identities=14%  Similarity=0.027  Sum_probs=48.8

Q ss_pred             CCCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCc--cccc---------ch-
Q psy13086         16 EKKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPH--FKRC---------KY-   77 (169)
Q Consensus        16 ~~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~--f~~~---------h~-   77 (169)
                      .++.+||=+|||..      +++..-...|+++|.++.-++.|++-=   .+.+ +.+.+..  ....         +. 
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lG---a~~~-i~~~~~~~~~~~~~~~~~~~g~D~v  102 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFG---ATEC-INPQDFSKPIQEVLIEMTDGGVDYS  102 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHT---CSEE-ECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhC---CcEE-EeCCchhhHHHHHHHHHcCCCCcEe
Confidence            45788999999833      445555578999999998888887521   1111 1111110  0000         00 


Q ss_pred             hhhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         78 KWRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        78 ~~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ...+-...+++.....+++||.+.+.
T Consensus       103 id~~G~~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2         103 FECIGNVKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             EECSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred             eecCCCHHHHHHHHHhhcCCceeEEE
Confidence            00001367888888999998777654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=87.43  E-value=0.78  Score=31.45  Aligned_cols=40  Identities=13%  Similarity=0.084  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHHH
Q psy13086         16 EKKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVIDE   55 (169)
Q Consensus        16 ~~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~~   55 (169)
                      .++.+||=+|||.+      ++...-...|+++|.+++-.+.+++.
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            34788999999866      55566667999999999988888764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=87.29  E-value=0.56  Score=32.53  Aligned_cols=83  Identities=7%  Similarity=0.053  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCC-ccccc---------chh
Q psy13086         16 EKKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDP-HFKRC---------KYK   78 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~-~f~~~---------h~~   78 (169)
                      .++.+||=.|+|.|       +++.. +++++++.-+++-++.+++.   ..+.+. .+.++ +.+..         +..
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~---Ga~~vi-~~~~~~~~~~~~~~~~~~Gvd~v  102 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI---GFDAAF-NYKTVNSLEEALKKASPDGYDCY  102 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT---TCSEEE-ETTSCSCHHHHHHHHCTTCEEEE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhh---hhhhhc-ccccccHHHHHHHHhhcCCCcee
Confidence            45788998899887       55554 57999999998877777653   223322 22221 11110         000


Q ss_pred             hhcccHHHHHHHHHhccCCcEEEEE
Q psy13086         79 WRIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        79 ~~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      -..+-.+.+++..+.|+|||++++.
T Consensus       103 ~D~vG~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2         103 FDNVGGEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             EESSCHHHHHHHGGGEEEEEEEEEC
T ss_pred             EEecCchhhhhhhhhccCCCeEEee
Confidence            0112367899999999999999875

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=87.18  E-value=0.84  Score=30.92  Aligned_cols=77  Identities=18%  Similarity=0.152  Sum_probs=50.2

Q ss_pred             eEEEEcCcc-c--ccCcC--CCCcEEEEeCCHHHHHHHHHHhc-----------cccceEEEeCCCCcccccchhhhccc
Q psy13086         20 EFVDVGCGK-L--YLPMF--PSTLILGLEIRVKVSDYVIDEWS-----------LYLKKMFFLYPDPHFKRCKYKWRIIN   83 (169)
Q Consensus        20 ~iLDiGCG~-G--la~~~--p~~~v~GiDis~~~l~~a~~~~~-----------~~~d~v~~~f~d~~f~~~h~~~~~~~   83 (169)
                      +|.=||+|. |  +|...  .+.+|+|.|.+++.++.|++.-.           ...|.|.+..|+..           .
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~-----------~   70 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQL-----------I   70 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHH-----------H
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHhh-----------h
Confidence            355678873 2  44332  45799999999999888876421           44555555443211           2


Q ss_pred             HHHHHHHHHhccCCcEEEEEeCCh
Q psy13086         84 QNLLSEYAYVLSEGGIVYTITDVK  107 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~d~~  107 (169)
                      .++++++...|+++-.+.-.+...
T Consensus        71 ~~vl~~l~~~l~~~~iv~~~~s~~   94 (165)
T d2f1ka2          71 LPTLEKLIPHLSPTAIVTDVASVK   94 (165)
T ss_dssp             HHHHHHHGGGSCTTCEEEECCSCC
T ss_pred             hhhhhhhhhhcccccceeeccccc
Confidence            578899999999998776554333

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=86.55  E-value=0.45  Score=35.68  Aligned_cols=32  Identities=19%  Similarity=0.093  Sum_probs=25.4

Q ss_pred             CCeEEEEcCccc-----ccCcCCCCcEEEEeCCHHHHHH
Q psy13086         18 KVEFVDVGCGKL-----YLPMFPSTLILGLEIRVKVSDY   51 (169)
Q Consensus        18 ~~~iLDiGCG~G-----la~~~p~~~v~GiDis~~~l~~   51 (169)
                      ..+|||.=||.|     +|..  +++|+++|-++.+...
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~l  125 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAAL  125 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHH
T ss_pred             CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHH
Confidence            458999999999     5544  4799999999965443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=0.38  Score=33.14  Aligned_cols=82  Identities=6%  Similarity=0.092  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCccc-------ccCcCCCCcEEEEeCCHHHHHHHHHHhccccceEEEeCCCCccccc----------chhh
Q psy13086         17 KKVEFVDVGCGKL-------YLPMFPSTLILGLEIRVKVSDYVIDEWSLYLKKMFFLYPDPHFKRC----------KYKW   79 (169)
Q Consensus        17 ~~~~iLDiGCG~G-------la~~~p~~~v~GiDis~~~l~~a~~~~~~~~d~v~~~f~d~~f~~~----------h~~~   79 (169)
                      ++.+||=.|+|.|       +|+. -++++++++.|+.-.+.+++-   ..+.+ +.+.++.+...          +..-
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~-~Ga~Vi~~~~s~~k~~~~~~l---Ga~~v-i~~~~~d~~~~v~~~t~g~g~d~v~  102 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKA-LGAKLIGTVGTAQKAQSALKA---GAWQV-INYREEDLVERLKEITGGKKVRVVY  102 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHH---TCSEE-EETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred             CCCEEEEEccccccchHHHHHHHH-hCCeEeecccchHHHHHHHhc---CCeEE-EECCCCCHHHHHHHHhCCCCeEEEE
Confidence            4688999988887       4444 467999999999988887653   12222 23333322110          0000


Q ss_pred             hcccHHHHHHHHHhccCCcEEEEE
Q psy13086         80 RIINQNLLSEYAYVLSEGGIVYTI  103 (169)
Q Consensus        80 ~~~~~~~l~~~~rvLkpGG~l~i~  103 (169)
                      ..+..+.+......|+|+|++++.
T Consensus       103 d~~g~~~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2         103 DSVGRDTWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             ECSCGGGHHHHHHTEEEEEEEEEC
T ss_pred             eCccHHHHHHHHHHHhcCCeeeec
Confidence            111245677888899999988764

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=83.18  E-value=1.3  Score=34.82  Aligned_cols=21  Identities=19%  Similarity=0.093  Sum_probs=17.6

Q ss_pred             HHHHHHHHHhccCCcEEEEEe
Q psy13086         84 QNLLSEYAYVLSEGGIVYTIT  104 (169)
Q Consensus        84 ~~~l~~~~rvLkpGG~l~i~~  104 (169)
                      ..||+.=++-|+|||+++++.
T Consensus       189 ~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         189 ALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             HHHHHHHHHHBCTTCEEEEEE
T ss_pred             HHHHHHHHHHhcCCcEEEEEE
Confidence            458888888999999999974

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=82.43  E-value=0.5  Score=37.61  Aligned_cols=42  Identities=10%  Similarity=-0.013  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcCccc-----ccCcCC--CCcEEEEeCCHHHHHHHHHHhc
Q psy13086         16 EKKVEFVDVGCGKL-----YLPMFP--STLILGLEIRVKVSDYVIDEWS   57 (169)
Q Consensus        16 ~~~~~iLDiGCG~G-----la~~~p--~~~v~GiDis~~~l~~a~~~~~   57 (169)
                      .++..++|||+=.|     ++...+  ..+|+++|+++...+..++++.
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~  259 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR  259 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            35789999999999     344433  3589999999999988877643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=81.53  E-value=2.9  Score=28.18  Aligned_cols=39  Identities=10%  Similarity=0.022  Sum_probs=31.2

Q ss_pred             CCCCeEEEEcCccc------ccCcCCCCcEEEEeCCHHHHHHHHH
Q psy13086         16 EKKVEFVDVGCGKL------YLPMFPSTLILGLEIRVKVSDYVID   54 (169)
Q Consensus        16 ~~~~~iLDiGCG~G------la~~~p~~~v~GiDis~~~l~~a~~   54 (169)
                      .++.+||=+|||.+      ++...-...|+++|.+++-++.|++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            45788999999997      4445556689999999988888875