Psyllid ID: psy13118

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
MHKYLHYRQHCLKHSVGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSSGTF
ccccccccccccccEEEccccEEEEEcccccccccEEEccccccccccHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccccccccccccccccccccccccccccEEEccccccEEEEEcccHHHHHHHHHHHHHHcccccEEEccccccccccccccccEEEEEEEccccEEEccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHcccccEEEcccccccccccccEEEccccccHHcHHHHHHHHHHccccHHHHHHHHcccc
cccEEEEcccccccHHHHcccEEEEEEcccccccccccccHHccccccHHHHHHHHHHHHHccccccEEcccccccccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccHEEEccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccEEEccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccc
mhkylhyrQHCLkhsvgvarplitvysekneptgqtvtlpsvfkapirpdvvNFVHqnlsknhrqpyavskdaghqtsaeswgtgravariprvrgggthrsgqgafgnmcragrmfaptriwRRWHRKVNVNQRRYAMVSAIAASSVPAlvmskghqtsaeswgtgravariprvrgggthrsgqgafgnmcragrmfaptriwRRWHRKVNVNQRRYAMVSAIAASSVPAlvmskghmiqdvpefplvvsDKIQEYKKTKQATIFLHRIKAWNDVLKVQSSGTF
MHKYLHYRQHCLKHSVGVARPLITVysekneptgqtVTLPSVFKAPIRPDVVNFVHQNLSKNhrqpyavskdaghqtsaeswgtgravariprvrgggthrsgqgafgnmcrAGRMfaptriwrrwHRKVNVNQRRYAMVSAIAASSVPALVMSKGHqtsaeswgtgravARIPrvrgggthrsgqgafgnmcrAGRMfaptriwrrwHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLkvqssgtf
MHKYLHYRQHCLKHSVGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSSGTF
***YLHYRQHCLKHSVGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNL***************************AVARIPRV********GQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVM**********WGTGRAVARIPRVRGGGT**SGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKV******
*********H******GVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQP******************************************NMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQS****
MHKYLHYRQHCLKHSVGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQP*****************TGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALV**************GRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSSGTF
*HKYLHYRQHCLKHSVGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKD*********WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSS***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHKYLHYRQHCLKHSVGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKKTKQATIFLHRIKAWNDVLKVQSSGTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
Q28346 421 60S ribosomal protein L4 yes N/A 0.461 0.313 0.790 7e-65
P09180 401 60S ribosomal protein L4 yes N/A 0.5 0.356 0.805 1e-63
P02385 401 60S ribosomal protein L4- N/A N/A 0.503 0.359 0.791 1e-60
P08429 396 60S ribosomal protein L4- N/A N/A 0.503 0.363 0.784 3e-60
Q58DW0 422 60S ribosomal protein L4 yes N/A 0.461 0.312 0.797 4e-60
P49165 386 60S ribosomal protein L4 N/A N/A 0.486 0.360 0.776 5e-60
Q5RCR3 427 60S ribosomal protein L4 yes N/A 0.454 0.304 0.797 5e-60
P36578 427 60S ribosomal protein L4 yes N/A 0.5 0.334 0.797 7e-60
Q4R5P9 427 60S ribosomal protein L4 N/A N/A 0.458 0.306 0.802 8e-60
Q9D8E6 419 60S ribosomal protein L4 yes N/A 0.461 0.315 0.797 9e-60
>sp|Q28346|RL4_CANFA 60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2 Back     alignment and function desciption
 Score =  247 bits (631), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 113/143 (79%), Positives = 128/143 (89%)

Query: 16  VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
           +  ARPLI+VYSEK E +G+ VTLP+VFKAPIRPD+VNFVH NL KN+RQPYAVS+ AGH
Sbjct: 1   MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60

Query: 76  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
           QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN  Q+
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 136 RYAMVSAIAASSVPALVMSKGHQ 158
           RYA+ SA+A  S+PALVMSKGH+
Sbjct: 121 RYAICSALACLSLPALVMSKGHR 143

Canis familiaris (taxid: 9615)
>sp|P09180|RL4_DROME 60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2 Back     alignment and function description
>sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B OS=Xenopus laevis GN=rpl4-b PE=2 SV=2 Back     alignment and function description
>sp|P08429|RL4A_XENLA 60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-a PE=2 SV=2 Back     alignment and function description
>sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3 Back     alignment and function description
>sp|P49165|RL4_URECA 60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1 Back     alignment and function description
>sp|Q5RCR3|RL4_PONAB 60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1 Back     alignment and function description
>sp|P36578|RL4_HUMAN 60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5 Back     alignment and function description
>sp|Q4R5P9|RL4_MACFA 60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1 Back     alignment and function description
>sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
242018771 671 60S ribosomal protein L4, putative [Pedi 0.5 0.213 0.811 5e-67
66525285 429 PREDICTED: 60S ribosomal protein L4 isof 0.461 0.307 0.811 6e-67
156536919 431 PREDICTED: 60S ribosomal protein L4-like 0.461 0.306 0.832 7e-67
383858571 448 PREDICTED: 60S ribosomal protein L4-like 0.461 0.294 0.818 9e-67
380024667 419 PREDICTED: 60S ribosomal protein L4-like 0.419 0.286 0.811 1e-66
193704510 459 PREDICTED: 60S ribosomal protein L4-like 0.461 0.287 0.839 1e-66
307205264 424 60S ribosomal protein L4 [Harpegnathos s 0.461 0.311 0.825 1e-66
326493892 459 predicted protein [Hordeum vulgare subsp 0.461 0.287 0.839 1e-66
350415276 434 PREDICTED: 60S ribosomal protein L4-like 0.461 0.304 0.811 2e-66
340725537 434 PREDICTED: 60S ribosomal protein L4-like 0.461 0.304 0.804 2e-66
>gi|242018771|ref|XP_002429847.1| 60S ribosomal protein L4, putative [Pediculus humanus corporis] gi|212514865|gb|EEB17109.1| 60S ribosomal protein L4, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  260 bits (664), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 116/143 (81%), Positives = 130/143 (90%)

Query: 15  SVGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAG 74
           ++ VARPL+TVY++KNE TG T+ LPSVFKAPIRPDVVNFVH  ++KN RQPY VS+ AG
Sbjct: 2   ALSVARPLVTVYNDKNESTGTTIVLPSVFKAPIRPDVVNFVHDQMAKNKRQPYCVSEKAG 61

Query: 75  HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQ 134
           HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRM +PT+ WRRWHRK+N+NQ
Sbjct: 62  HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMASPTKPWRRWHRKINLNQ 121

Query: 135 RRYAMVSAIAASSVPALVMSKGH 157
           RRYAMVSA+AAS VPALVMSKGH
Sbjct: 122 RRYAMVSALAASGVPALVMSKGH 144

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|66525285|ref|XP_392071.2| PREDICTED: 60S ribosomal protein L4 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|156536919|ref|XP_001608023.1| PREDICTED: 60S ribosomal protein L4-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383858571|ref|XP_003704774.1| PREDICTED: 60S ribosomal protein L4-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380024667|ref|XP_003696114.1| PREDICTED: 60S ribosomal protein L4-like [Apis florea] Back     alignment and taxonomy information
>gi|193704510|ref|XP_001945463.1| PREDICTED: 60S ribosomal protein L4-like isoform 1 [Acyrthosiphon pisum] gi|328707724|ref|XP_003243482.1| PREDICTED: 60S ribosomal protein L4-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307205264|gb|EFN83644.1| 60S ribosomal protein L4 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|326493892|dbj|BAJ85408.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|350415276|ref|XP_003490589.1| PREDICTED: 60S ribosomal protein L4-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340725537|ref|XP_003401125.1| PREDICTED: 60S ribosomal protein L4-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
UNIPROTKB|Q5ZII1 421 RPL4 "Uncharacterized protein" 0.489 0.332 0.828 1.6e-61
UNIPROTKB|F1SJJ5 426 RPL4 "60S ribosomal protein L4 0.489 0.328 0.814 5.5e-61
UNIPROTKB|Q58DW0 422 RPL4 "60S ribosomal protein L4 0.489 0.331 0.814 5.5e-61
UNIPROTKB|E2R546 412 RPL4 "60S ribosomal protein L4 0.489 0.339 0.814 5.5e-61
UNIPROTKB|F1PVZ2 422 RPL4 "60S ribosomal protein L4 0.489 0.331 0.814 5.5e-61
UNIPROTKB|J9JHV8 422 RPL4 "60S ribosomal protein L4 0.489 0.331 0.814 5.5e-61
UNIPROTKB|P36578 427 RPL4 "60S ribosomal protein L4 0.489 0.327 0.814 5.5e-61
UNIPROTKB|Q6P3V9 421 Rpl4 "Ribosomal protein L4" [R 0.489 0.332 0.814 5.5e-61
MGI|MGI:1915141 419 Rpl4 "ribosomal protein L4" [M 0.489 0.334 0.814 5.5e-61
RGD|619824 421 Rpl4 "ribosomal protein L4" [R 0.486 0.330 0.820 7.1e-61
UNIPROTKB|Q5ZII1 RPL4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 116/140 (82%), Positives = 130/140 (92%)

Query:    19 ARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTS 78
             ARPLI+VYSEK E +G+ VTLP+VFKAPIRPDVVNFVH NL KN+RQPYAVS+ AGHQTS
Sbjct:     4 ARPLISVYSEKGEASGKNVTLPAVFKAPIRPDVVNFVHTNLRKNNRQPYAVSELAGHQTS 63

Query:    79 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYA 138
             AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VNV Q+RYA
Sbjct:    64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNVTQKRYA 123

Query:   139 MVSAIAASSVPALVMSKGHQ 158
             + SA+AAS++PALVMSKGH+
Sbjct:   124 ICSALAASALPALVMSKGHR 143
GO:0003735 "structural constituent of ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA
GO:0005730 "nucleolus" evidence=IEA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA
UNIPROTKB|F1SJJ5 RPL4 "60S ribosomal protein L4" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DW0 RPL4 "60S ribosomal protein L4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R546 RPL4 "60S ribosomal protein L4" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PVZ2 RPL4 "60S ribosomal protein L4" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9JHV8 RPL4 "60S ribosomal protein L4" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P36578 RPL4 "60S ribosomal protein L4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P3V9 Rpl4 "Ribosomal protein L4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1915141 Rpl4 "ribosomal protein L4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619824 Rpl4 "ribosomal protein L4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P50878RL4_RATNo assigned EC number0.80280.45800.3111yesN/A
Q58DW0RL4_BOVINNo assigned EC number0.79720.46150.3127yesN/A
Q5RCR3RL4_PONABNo assigned EC number0.79720.45450.3044yesN/A
Q28346RL4_CANFANo assigned EC number0.79020.46150.3135yesN/A
P49691RL4B_ARATHNo assigned EC number0.72720.48950.3439yesN/A
P36578RL4_HUMANNo assigned EC number0.79720.50.3348yesN/A
Q9P784RL4B_SCHPONo assigned EC number0.65030.45450.3581yesN/A
P10664RL4A_YEASTNo assigned EC number0.65240.45450.3591yesN/A
Q9D8E6RL4_MOUSENo assigned EC number0.79720.46150.3150yesN/A
O02056RL4_CAEELNo assigned EC number0.66180.48600.4028yesN/A
P09180RL4_DROMENo assigned EC number0.80550.50.3566yesN/A
Q54Z69RL4_DICDINo assigned EC number0.67370.48950.3794yesN/A
P49626RL4B_YEASTNo assigned EC number0.65240.45450.3591yesN/A
P35679RL4A_SCHPONo assigned EC number0.65730.45450.3581yesN/A
Q9SF40RL4A_ARATHNo assigned EC number0.71320.48950.3448yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
PLN00185 405 PLN00185, PLN00185, 60S ribosomal protein L4-1; Pr 5e-86
PTZ00428 381 PTZ00428, PTZ00428, 60S ribosomal protein L4; Prov 4e-84
PTZ00428 381 PTZ00428, PTZ00428, 60S ribosomal protein L4; Prov 6e-73
PLN00185 405 PLN00185, PLN00185, 60S ribosomal protein L4-1; Pr 2e-72
PRK04042254 PRK04042, rpl4lp, 50S ribosomal protein L4P; Provi 6e-33
PRK04042254 PRK04042, rpl4lp, 50S ribosomal protein L4P; Provi 7e-31
TIGR03672251 TIGR03672, rpl4p_arch, 50S ribosomal protein L4P 4e-30
TIGR03672251 TIGR03672, rpl4p_arch, 50S ribosomal protein L4P 4e-28
COG0088214 COG0088, RplD, Ribosomal protein L4 [Translation, 2e-21
pfam00573190 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 f 1e-18
COG0088214 COG0088, RplD, Ribosomal protein L4 [Translation, 7e-12
pfam00573190 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 f 9e-09
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional Back     alignment and domain information 
 Score =  262 bits (671), Expect = 5e-86
 Identities = 106/142 (74%), Positives = 121/142 (85%), Gaps = 3/142 (2%)

Query: 19  ARPLITVYS---EKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
           ARPL++V S   +       TV LP V  APIRPD+VNFVH N+SKN RQPYAVSK AGH
Sbjct: 5   ARPLVSVQSLDGDMATDKSATVALPDVMTAPIRPDIVNFVHTNISKNSRQPYAVSKKAGH 64

Query: 76  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
           QTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCR GRMFAPT+ WRRWHRKVNVNQ+
Sbjct: 65  QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRKVNVNQK 124

Query: 136 RYAMVSAIAASSVPALVMSKGH 157
           RYA+VSA+AAS+VP+LVM++GH
Sbjct: 125 RYAVVSALAASAVPSLVMARGH 146

Length = 405
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional Back     alignment and domain information
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional Back     alignment and domain information
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional Back     alignment and domain information
>gnl|CDD|235211 PRK04042, rpl4lp, 50S ribosomal protein L4P; Provisional Back     alignment and domain information
>gnl|CDD|235211 PRK04042, rpl4lp, 50S ribosomal protein L4P; Provisional Back     alignment and domain information
>gnl|CDD|234305 TIGR03672, rpl4p_arch, 50S ribosomal protein L4P Back     alignment and domain information
>gnl|CDD|234305 TIGR03672, rpl4p_arch, 50S ribosomal protein L4P Back     alignment and domain information
>gnl|CDD|223166 COG0088, RplD, Ribosomal protein L4 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215999 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family Back     alignment and domain information
>gnl|CDD|223166 COG0088, RplD, Ribosomal protein L4 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215999 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
KOG1475|consensus 363 100.0
PLN00185 405 60S ribosomal protein L4-1; Provisional 100.0
PTZ00428 381 60S ribosomal protein L4; Provisional 100.0
PRK04042254 rpl4lp 50S ribosomal protein L4P; Provisional 100.0
TIGR03672251 rpl4p_arch 50S ribosomal protein L4P. One of the p 100.0
PRK05319205 rplD 50S ribosomal protein L4; Provisional 100.0
COG0088214 RplD Ribosomal protein L4 [Translation, ribosomal 100.0
PRK14547 298 rplD 50S ribosomal protein L4; Provisional 100.0
CHL00147215 rpl4 ribosomal protein L4; Validated 99.98
PRK14907295 rplD 50S ribosomal protein L4; Provisional 99.97
PF00573192 Ribosomal_L4: Ribosomal protein L4/L1 family; Inte 99.97
PLN00185 405 60S ribosomal protein L4-1; Provisional 99.9
KOG1475|consensus363 99.9
KOG1624|consensus290 99.88
PTZ00428381 60S ribosomal protein L4; Provisional 99.86
COG0088214 RplD Ribosomal protein L4 [Translation, ribosomal 99.58
PRK04042254 rpl4lp 50S ribosomal protein L4P; Provisional 99.46
TIGR03672251 rpl4p_arch 50S ribosomal protein L4P. One of the p 99.44
PF00573192 Ribosomal_L4: Ribosomal protein L4/L1 family; Inte 98.87
PRK05319205 rplD 50S ribosomal protein L4; Provisional 98.52
PRK14547298 rplD 50S ribosomal protein L4; Provisional 98.4
PRK14907295 rplD 50S ribosomal protein L4; Provisional 98.19
CHL00147215 rpl4 ribosomal protein L4; Validated 97.89
KOG1624|consensus290 93.0
>KOG1475|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.9e-56  Score=418.43  Aligned_cols=188  Identities=70%  Similarity=1.177  Sum_probs=179.2

Q ss_pred             hhcCceeEEecCCCCcccceeeccccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccC
Q psy13118         17 GVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRG   96 (286)
Q Consensus        17 ~~~m~~i~v~~~~~~~~g~~v~lp~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rq   96 (286)
                      ++++|+|+||+++|+.+.++++||.||.+|||+|++++++..+..|.|||||.+..+|+++++||||+||+++|+|+   
T Consensus         1 ~~arp~vtvy~~~g~~s~~~l~lp~vf~aPiRpdlv~~v~~~~~~n~rQpyAVs~kAG~QtSAESWGTGRAvaRiPR---   77 (363)
T KOG1475|consen    1 AAARPLVTVYSLDGEASKKTLTLPAVFSAPIRPDLVNFVHTQVRKNRRQPYAVSEKAGHQTSAESWGTGRAVARIPR---   77 (363)
T ss_pred             CCccceeeEEecccccccccccccceeccCCcHHHHHHHHHHHhhccccchhhhhhhccccchhhcccccceecccc---
Confidence            57899999999999999999999999999999999999999999999999999999999999999999998876554   


Q ss_pred             CCcccCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccccccccccccccccc
Q psy13118         97 GGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRV  176 (286)
Q Consensus        97 kGTgrArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~p~~  176 (286)
                                                                                                     .
T Consensus        78 -------------------------------------------------------------------------------V   78 (363)
T KOG1475|consen   78 -------------------------------------------------------------------------------V   78 (363)
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           5


Q ss_pred             cCCCccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEecCCC
Q psy13118        177 RGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQ  256 (286)
Q Consensus       177 ~ggGt~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d~~~  256 (286)
                      .||||+|+|||||.++||||+||+|+++||+||++||.+++|||+.||||+++.+.||++|||+|++++|.||||+|+++
T Consensus        79 ~GGGT~RsGQgAFgNmCR~GrMfaPtKt~RrW~rkVn~n~Kr~A~asaiaasavpaLv~arGHrIe~VpelPlVVsd~ve  158 (363)
T KOG1475|consen   79 GGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRKVNENEKRYAIASAIAASAVPALVMARGHRIEEVPELPLVVSDKVE  158 (363)
T ss_pred             CCCCcccccchhhhhhcccccccCchhhHHHHhhhhhhhhhhhHHHhhhhhhhhhHHHHhcCccccccccCceEeehhhH
Confidence            78888888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHCCCcchhHhhhccCCC
Q psy13118        257 EYKKTKQATIFLHRIKAWNDVLKVQSSGTF  286 (286)
Q Consensus       257 ~~~KTKe~~~~Lk~l~~~~Dv~r~~~~r~~  286 (286)
                      ++.||||++.+|+++++|+|++++..|+.+
T Consensus       159 ~~~KTkeAV~~Lk~~~a~~di~kv~~S~~~  188 (363)
T KOG1475|consen  159 SFRKTKEAVALLKKLKAWNDIKKVYNSRRL  188 (363)
T ss_pred             HHHhHHHHHHHHHHhccHHHHHHHHhhccc
Confidence            999999999999999999999999998764

>PLN00185 60S ribosomal protein L4-1; Provisional Back     alignment and domain information
>PTZ00428 60S ribosomal protein L4; Provisional Back     alignment and domain information
>PRK04042 rpl4lp 50S ribosomal protein L4P; Provisional Back     alignment and domain information
>TIGR03672 rpl4p_arch 50S ribosomal protein L4P Back     alignment and domain information
>PRK05319 rplD 50S ribosomal protein L4; Provisional Back     alignment and domain information
>COG0088 RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14547 rplD 50S ribosomal protein L4; Provisional Back     alignment and domain information
>CHL00147 rpl4 ribosomal protein L4; Validated Back     alignment and domain information
>PRK14907 rplD 50S ribosomal protein L4; Provisional Back     alignment and domain information
>PF00573 Ribosomal_L4: Ribosomal protein L4/L1 family; InterPro: IPR002136 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PLN00185 60S ribosomal protein L4-1; Provisional Back     alignment and domain information
>KOG1475|consensus Back     alignment and domain information
>KOG1624|consensus Back     alignment and domain information
>PTZ00428 60S ribosomal protein L4; Provisional Back     alignment and domain information
>COG0088 RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04042 rpl4lp 50S ribosomal protein L4P; Provisional Back     alignment and domain information
>TIGR03672 rpl4p_arch 50S ribosomal protein L4P Back     alignment and domain information
>PF00573 Ribosomal_L4: Ribosomal protein L4/L1 family; InterPro: IPR002136 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK05319 rplD 50S ribosomal protein L4; Provisional Back     alignment and domain information
>PRK14547 rplD 50S ribosomal protein L4; Provisional Back     alignment and domain information
>PRK14907 rplD 50S ribosomal protein L4; Provisional Back     alignment and domain information
>CHL00147 rpl4 ribosomal protein L4; Validated Back     alignment and domain information
>KOG1624|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
2zkr_c 421 Structure Of A Mammalian Ribosomal 60s Subunit With 5e-66
2zkr_c 421 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-56
3zf7_r 374 High-resolution Cryo-electron Microscopy Structure 4e-53
3zf7_r 374 High-resolution Cryo-electron Microscopy Structure 1e-46
3izr_D 405 Localization Of The Large Subunit Ribosomal Protein 6e-52
3izr_D 405 Localization Of The Large Subunit Ribosomal Protein 2e-47
3izs_D362 Localization Of The Large Subunit Ribosomal Protein 7e-40
3izs_D 362 Localization Of The Large Subunit Ribosomal Protein 4e-32
2ww9_H362 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 7e-40
2ww9_H 362 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 4e-32
1s1i_D361 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 8e-40
1s1i_D 361 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 4e-32
3jyw_D257 Structure Of The 60s Proteins For Eukaryotic Riboso 3e-38
3jyw_D257 Structure Of The 60s Proteins For Eukaryotic Riboso 1e-31
4a17_C 410 T.Thermophila 60s Ribosomal Subunit In Complex With 4e-38
3j21_D255 Promiscuous Behavior Of Proteins In Archaeal Riboso 4e-14
1ffk_C246 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-08
1ffk_C246 Crystal Structure Of The Large Ribosomal Subunit Fr 6e-06
1jj2_C246 Fully Refined Crystal Structure Of The Haloarcula M 2e-08
1jj2_C246 Fully Refined Crystal Structure Of The Haloarcula M 6e-06
3cc2_C246 The Refined Crystal Structure Of The Haloarcula Mar 3e-08
3cc2_C246 The Refined Crystal Structure Of The Haloarcula Mar 8e-06
>pdb|2ZKR|CC Chain c, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 421 Back     alignment and structure 
Iteration: 1

 Score =  247 bits (631), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 113/143 (79%), Positives = 128/143 (89%)
Query: 16  VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
           +  ARPLI+VYSEK E +G+ VTLP+VFKAPIRPD+VNFVH NL KN+RQPYAVS+ AGH
Sbjct: 1   MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 76  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
           QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN  Q+
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 136 RYAMVSAIAASSVPALVMSKGHQ 158
           RYA+ SA+A  S+PALVMSKGH+
Sbjct: 121 RYAICSALACLSLPALVMSKGHR 143
>pdb|2ZKR|CC Chain c, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 421 Back     alignment and structure
>pdb|3ZF7|RR Chain r, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 374 Back     alignment and structure
>pdb|3ZF7|RR Chain r, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 374 Back     alignment and structure
>pdb|3IZR|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 405 Back     alignment and structure
>pdb|3IZR|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 405 Back     alignment and structure
>pdb|3IZS|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 362 Back     alignment and structure
>pdb|3IZS|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 362 Back     alignment and structure
>pdb|2WW9|H Chain H, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 362 Back     alignment and structure
>pdb|2WW9|H Chain H, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 362 Back     alignment and structure
>pdb|1S1I|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 361 Back     alignment and structure
>pdb|1S1I|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 361 Back     alignment and structure
>pdb|3JYW|D Chain D, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 257 Back     alignment and structure
>pdb|3JYW|D Chain D, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 257 Back     alignment and structure
>pdb|4A17|C Chain C, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 410 Back     alignment and structure
>pdb|3J21|D Chain D, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 255 Back     alignment and structure
>pdb|1FFK|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 246 Back     alignment and structure
>pdb|1FFK|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 246 Back     alignment and structure
>pdb|1JJ2|C Chain C, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 246 Back     alignment and structure
>pdb|1JJ2|C Chain C, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 246 Back     alignment and structure
>pdb|3CC2|C Chain C, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 246 Back     alignment and structure
>pdb|3CC2|C Chain C, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
2zkr_c 421 60S ribosomal protein L4; protein-RNA complex, 60S 1e-52
2zkr_c 421 60S ribosomal protein L4; protein-RNA complex, 60S 6e-39
2wwb_H362 60S ribosomal protein L4-B; ribosome, protein EXIT 9e-50
2wwb_H 362 60S ribosomal protein L4-B; ribosome, protein EXIT 6e-37
3iz5_D 405 60S ribosomal protein L4 (L4P); eukaryotic ribosom 6e-47
3iz5_D 405 60S ribosomal protein L4 (L4P); eukaryotic ribosom 1e-35
4a17_C 410 RPL4, ribosomal protein L3; eukaryotic ribosome, r 9e-45
4a17_C 410 RPL4, ribosomal protein L3; eukaryotic ribosome, r 7e-38
1vq8_C246 50S ribosomal protein L4E; ribosome 50S, protein-p 5e-39
1vq8_C246 50S ribosomal protein L4E; ribosome 50S, protein-p 7e-30
1dmg_A225 Ribosomal protein L4; alpha-beta, ribosome, RNA, S 4e-04
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 421 Back     alignment and structure
 Score =  176 bits (446), Expect = 1e-52
 Identities = 113/143 (79%), Positives = 128/143 (89%)

Query: 16  VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGH 75
           +  ARPLI+VYSEK E +G+ VTLP+VFKAPIRPD+VNFVH NL KN+RQPYAVS+ AGH
Sbjct: 1   MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60

Query: 76  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQR 135
           QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR GRMFAPT+ WRRWHR+VN  Q+
Sbjct: 61  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120

Query: 136 RYAMVSAIAASSVPALVMSKGHQ 158
           RYA+ SA+A  S+PALVMSKGH+
Sbjct: 121 RYAICSALACLSLPALVMSKGHR 143
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 421 Back     alignment and structure
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D Length = 362 Back     alignment and structure
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D Length = 362 Back     alignment and structure
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C Length = 410 Back     alignment and structure
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C Length = 410 Back     alignment and structure
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ... Length = 246 Back     alignment and structure
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ... Length = 246 Back     alignment and structure
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1 Length = 225 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
2zkr_c 421 60S ribosomal protein L4; protein-RNA complex, 60S 100.0
4a17_C 410 RPL4, ribosomal protein L3; eukaryotic ribosome, r 100.0
3j21_D255 50S ribosomal protein L4P; archaea, archaeal, KINK 100.0
3iz5_D 405 60S ribosomal protein L4 (L4P); eukaryotic ribosom 100.0
2wwb_H 362 60S ribosomal protein L4-B; ribosome, protein EXIT 100.0
1vq8_C246 50S ribosomal protein L4E; ribosome 50S, protein-p 100.0
3v2d_F210 50S ribosomal protein L4; ribosome associated inhi 100.0
1dmg_A225 Ribosomal protein L4; alpha-beta, ribosome, RNA, S 100.0
3bbo_G293 Ribosomal protein L4; large ribosomal subunit, spi 100.0
2zjr_C205 50S ribosomal protein L4; ribosome, large ribosoma 100.0
3r8s_E201 50S ribosomal protein L4; protein biosynthesis, RN 100.0
2ftc_D175 Mitochondrial ribosomal protein L4 isoform A, mito 99.97
2wwb_H362 60S ribosomal protein L4-B; ribosome, protein EXIT 99.85
3iz5_D 405 60S ribosomal protein L4 (L4P); eukaryotic ribosom 99.79
1vq8_C246 50S ribosomal protein L4E; ribosome 50S, protein-p 99.75
2zkr_c 421 60S ribosomal protein L4; protein-RNA complex, 60S 99.71
3j21_D255 50S ribosomal protein L4P; archaea, archaeal, KINK 99.7
4a17_C 410 RPL4, ribosomal protein L3; eukaryotic ribosome, r 99.59
3v2d_F210 50S ribosomal protein L4; ribosome associated inhi 98.7
3bbo_G293 Ribosomal protein L4; large ribosomal subunit, spi 98.7
2zjr_C205 50S ribosomal protein L4; ribosome, large ribosoma 98.69
2ftc_D175 Mitochondrial ribosomal protein L4 isoform A, mito 98.69
1dmg_A225 Ribosomal protein L4; alpha-beta, ribosome, RNA, S 98.61
3r8s_E201 50S ribosomal protein L4; protein biosynthesis, RN 98.6
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
Probab=100.00  E-value=5.2e-54  Score=413.88  Aligned_cols=189  Identities=72%  Similarity=1.203  Sum_probs=175.1

Q ss_pred             hhhcCceeEEecCCCCcccceeeccccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceecccccc
Q psy13118         16 VGVARPLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVR   95 (286)
Q Consensus        16 ~~~~m~~i~v~~~~~~~~g~~v~lp~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~r   95 (286)
                      ||+++|+++|||.+|+.+|.+|+||+||..|||+|+||++|.+++.|.||||+.++.+|++|++||||+||+++|||+.+
T Consensus         1 ~~~~rm~v~V~~~~G~~~g~~ieLp~VF~~piR~dlIh~vV~~~~an~RQgta~t~~AG~KTraEv~G~GRKp~RiPRv~   80 (421)
T 2zkr_c            1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVR   80 (421)
T ss_dssp             ------CCEEECTTSSEEEECSSCCGGGGSCCCHHHHHHHHHHHHHTTCCCCCCCSCTTTCSCCCCCCSSSSSCCSCCBT
T ss_pred             CCCcCceeEEEcCCCCccccEEehhHhhCCCccHHHHHHHHHHHHHhccCCCCcCcccCCcceeEecCCCCCcCCccccc
Confidence            57899999999999999886799999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcccCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCcccccccccccccccccc
Q psy13118         96 GGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPR  175 (286)
Q Consensus        96 qkGTgrArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~p~  175 (286)
                      |+||||||||++                                                                +   
T Consensus        81 QKGTGRARqGs~----------------------------------------------------------------r---   93 (421)
T 2zkr_c           81 GGGTHRSGQGAF----------------------------------------------------------------G---   93 (421)
T ss_dssp             TTTBCCCSTTCC----------------------------------------------------------------T---
T ss_pred             CCCCCccCcccc----------------------------------------------------------------c---
Confidence            999999999988                                                                2   


Q ss_pred             ccCCCccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEecCC
Q psy13118        176 VRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKI  255 (286)
Q Consensus       176 ~~ggGt~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d~~  255 (286)
                                     ++||||++|||++|||+|+++||+|+|++||+||||+++.++||++|||+|+++.++||||+|+|
T Consensus        94 ---------------s~~RGGr~fgP~kp~R~~~~KlNkK~rrlAlrSALSaka~~~LV~aRGH~i~~~~e~~LVVvD~l  158 (421)
T 2zkr_c           94 ---------------NMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKV  158 (421)
T ss_dssp             ---------------TSTTCCCCSSCCCSSSCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCCSCSCCSEEECGGG
T ss_pred             ---------------cccccceeeCCCCCCcchhhhcCHHHHHHHHHHHHHhcccchhhhhccccccccccCCEEEEeCC
Confidence                           36778999999989999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHCCCcchhHhhhccCCC
Q psy13118        256 QEYKKTKQATIFLHRIKAWNDVLKVQSSGTF  286 (286)
Q Consensus       256 ~~~~KTKe~~~~Lk~l~~~~Dv~r~~~~r~~  286 (286)
                      ++.+|||+++++|+.||+++|++|++++++|
T Consensus       159 e~~~KTK~~v~~Lk~lgl~~d~~r~~~sk~i  189 (421)
T 2zkr_c          159 EGYKKTKEAVLLLKKLKAWNDIKKVYASQRM  189 (421)
T ss_dssp             GGCCCHHHHHHHHHHTTCTHHHHHTTSSCEE
T ss_pred             ccccChHHHHHHHHhcCCCcchhhhhhheec
Confidence            9889999999999999999999999988653
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C Back     alignment and structure
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D Back     alignment and structure
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ... Back     alignment and structure
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ... Back     alignment and structure
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1 Back     alignment and structure
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ... Back     alignment and structure
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ... Back     alignment and structure
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D Back     alignment and structure
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D Back     alignment and structure
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ... Back     alignment and structure
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C Back     alignment and structure
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ... Back     alignment and structure
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ... Back     alignment and structure
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D Back     alignment and structure
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1 Back     alignment and structure
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 286
d1vqoc1246 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon 1e-28
d1vqoc1246 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon 1e-20
d1dmga_225 c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga mar 2e-10
d2j01f1208 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus t 6e-08
d2gycc1198 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherich 7e-04
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 246 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L4
superfamily: Ribosomal protein L4
family: Ribosomal protein L4
domain: Ribosomal protein L4
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  107 bits (269), Expect = 1e-28
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 23  ITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESW 82
            T+Y       G  V LP VF+ P+R D++    +    N +Q Y   + AG +T AES+
Sbjct: 3   ATIYDLDGNTDG-EVDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESF 61

Query: 83  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSA 142
           G+GR  A +P++ G                 GR   P +  +     +N  +R+ A+ SA
Sbjct: 62  GSGRGQAHVPKLDGRARRV-------PQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSA 114

Query: 143 IAASSVPALVMSKGH 157
           +AA++   LV  +GH
Sbjct: 115 LAATADADLVADRGH 129
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 246 Back     information, alignment and structure
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima [TaxId: 2336]} Length = 225 Back     information, alignment and structure
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus thermophilus [TaxId: 274]} Length = 208 Back     information, alignment and structure
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli [TaxId: 562]} Length = 198 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d1vqoc1246 Ribosomal protein L4 {Archaeon Haloarcula marismor 100.0
d1dmga_225 Ribosomal protein L4 {Thermotoga maritima [TaxId: 100.0
d2j01f1208 Ribosomal protein L4 {Thermus thermophilus [TaxId: 99.97
d2gycc1198 Ribosomal protein L4 {Escherichia coli [TaxId: 562 99.97
d2zjrc1197 Ribosomal protein L4 {Deinococcus radiodurans [Tax 99.97
d1vqoc1246 Ribosomal protein L4 {Archaeon Haloarcula marismor 99.28
d1dmga_225 Ribosomal protein L4 {Thermotoga maritima [TaxId: 98.07
d2j01f1208 Ribosomal protein L4 {Thermus thermophilus [TaxId: 97.96
d2zjrc1197 Ribosomal protein L4 {Deinococcus radiodurans [Tax 97.36
d2gycc1198 Ribosomal protein L4 {Escherichia coli [TaxId: 562 97.18
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L4
superfamily: Ribosomal protein L4
family: Ribosomal protein L4
domain: Ribosomal protein L4
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=4.3e-41  Score=300.82  Aligned_cols=172  Identities=29%  Similarity=0.471  Sum_probs=159.3

Q ss_pred             ceeEEecCCCCcccceeeccccccccCchhHHHHHHHHHHhcCCCCCCCCCCCccceeeeeeCCCcceeccccccCCCcc
Q psy13118         21 PLITVYSEKNEPTGQTVTLPSVFKAPIRPDVVNFVHQNLSKNHRQPYAVSKDAGHQTSAESWGTGRAVARIPRVRGGGTH  100 (286)
Q Consensus        21 ~~i~v~~~~~~~~g~~v~lp~vf~~~ir~~lI~~~v~~~q~~gRqp~Ag~~~~g~kt~ae~~G~GRkv~RvP~~rqkGTg  100 (286)
                      |+++|||.+|+++| +|+||+||+.|+|.|+||+++.++++|.||+|+..++.|.+++++++|+|+        +|+|||
T Consensus         1 Mk~~v~~~~gk~~g-~i~lpdvF~~~~r~dlvh~~v~~~~an~Rqgt~~~k~~g~~t~a~~~g~g~--------~qk~tg   71 (246)
T d1vqoc1           1 MQATIYDLDGNTDG-EVDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGR--------GQAHVP   71 (246)
T ss_dssp             CEEEEECTTSCEEE-EEECCGGGGSCCCHHHHHHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSS--------SCCCCC
T ss_pred             CceEEEcCCCCEee-EEEChhhhCCCCCHHHHHHHHHHHHHhcccCcCCCchhheeeeeeecCccc--------cccCCC
Confidence            78999999999999 599999999999999999999999999999999999999999999999998        589999


Q ss_pred             cCCCCccccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHhhccChhHHhhcCCccccccccccccccccccccCCC
Q psy13118        101 RSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHQTSAESWGTGRAVARIPRVRGGG  180 (286)
Q Consensus       101 rArqGa~~~~~rgGr~ahpp~~~k~~~~kiN~ker~~A~~sAiAata~~~lV~~RGH~~~~~s~~~~~~~~r~p~~~ggG  180 (286)
                      |||+|+.                                                                |+|+|    
T Consensus        72 rar~g~r----------------------------------------------------------------rsP~~----   83 (246)
T d1vqoc1          72 KLDGRAR----------------------------------------------------------------RVPQA----   83 (246)
T ss_dssp             EETTEEC----------------------------------------------------------------SSTTS----
T ss_pred             ccccCCc----------------------------------------------------------------cCCCc----
Confidence            9999988                                                                55555    


Q ss_pred             ccccCccccCcccccceeeCCCCCCcccccccCHHHHHHHHHHHHHhccCchhhhccCccccCCCCcCEEEecCCCCccc
Q psy13118        181 THRSGQGAFGNMCRAGRMFAPTRIWRRWHRKVNVNQRRYAMVSAIAASSVPALVMSKGHMIQDVPEFPLVVSDKIQEYKK  260 (286)
Q Consensus       181 t~rAgqgA~aP~~rGG~~~~p~~~~r~~~~kvn~k~rr~A~~saia~~~~~~lV~~RGH~i~~v~~~~lvV~d~~~~~~K  260 (286)
                                   |||+++|||+|+|+|+.++|+|+|++|+++||++++..++|++|||.+++ .++|+||+|.+++.+|
T Consensus        84 -------------rGGG~a~gPkp~r~~~~klnkK~r~lAl~~aLs~k~~~~~v~~~g~~~~~-~~~~iV~~~~~~~~~K  149 (246)
T d1vqoc1          84 -------------VKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSDDFEDLVK  149 (246)
T ss_dssp             -------------TTCCCSSCCCTTCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCC-SSCSEEECGGGGGCCC
T ss_pred             -------------CCCceecCCCCccchhHHHHHHHHHHHHHHHHHHhhcccceeeecccccC-CCCCEEeccccccccc
Confidence                         55567787788899999999999999999999999999999999999988 7999999988888999


Q ss_pred             HHHHHHHHHHCCCcchhHhhhcc
Q psy13118        261 TKQATIFLHRIKAWNDVLKVQSS  283 (286)
Q Consensus       261 TKe~~~~Lk~l~~~~Dv~r~~~~  283 (286)
                      ||++.++|++|++++++..+.++
T Consensus       150 TK~~~~~L~~l~~~~~~~~~~~~  172 (246)
T d1vqoc1         150 TQEVVSLLEALDVHADIDRADET  172 (246)
T ss_dssp             HHHHHHHHHTTTCTHHHHHTSCC
T ss_pred             HHHHHHHHHhcCCccceeeeccc
Confidence            99999999999999998887653
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zjrc1 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjrc1 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure