Psyllid ID: psy13206
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | 2.2.26 [Sep-21-2011] | |||||||
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.912 | 0.843 | 0.326 | 9e-60 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | N/A | 0.887 | 0.526 | 0.328 | 9e-58 | |
| Q7PIR5 | 793 | Facilitated trehalose tra | no | N/A | 0.893 | 0.538 | 0.326 | 1e-56 | |
| A9ZSY3 | 505 | Facilitated trehalose tra | N/A | N/A | 0.901 | 0.853 | 0.318 | 3e-56 | |
| A5LGM7 | 504 | Facilitated trehalose tra | N/A | N/A | 0.880 | 0.835 | 0.308 | 6e-54 | |
| Q291H8 | 868 | Facilitated trehalose tra | no | N/A | 0.859 | 0.473 | 0.317 | 6e-52 | |
| B4GAP7 | 869 | Facilitated trehalose tra | N/A | N/A | 0.859 | 0.472 | 0.317 | 6e-52 | |
| B4MYA4 | 872 | Facilitated trehalose tra | N/A | N/A | 0.878 | 0.481 | 0.302 | 1e-50 | |
| B3MG58 | 866 | Facilitated trehalose tra | N/A | N/A | 0.859 | 0.474 | 0.312 | 2e-50 | |
| A9ZSY2 | 502 | Facilitated trehalose tra | N/A | N/A | 0.922 | 0.878 | 0.290 | 3e-50 |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 231 bits (589), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 148/453 (32%), Positives = 232/453 (51%), Gaps = 17/453 (3%)
Query: 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV 62
G S + SP L K RN T E+T SWV I+ L LV I G L++Y+
Sbjct: 71 GFSSAYTSPALVSMKD------RNITSFEVTDQSGSWVGGIMPLAGLVGGILGGPLIEYL 124
Query: 63 GRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCR 122
GRK +L T +IISWLL+ HV ++ V R + G ++G+ P+Y+GE + R
Sbjct: 125 GRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQPEVR 184
Query: 123 GALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGR 182
G L N GILL + G Y+D+ LA++ +PV FL+ +PE+P + + +GR
Sbjct: 185 GTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPETPRWYVSRGR 244
Query: 183 DVDARKSLFWLRGGRESSKDKINLELSNI---KQDVEREMKLSDDFMDIISTPANRRSLL 239
D ARK+L WLRG K ++ EL I QD ER S +D++ N + LL
Sbjct: 245 DDRARKALQWLRG----KKADVDPELKGIIKSHQDAERHASQS-AMLDLLKK-TNLKPLL 298
Query: 240 IVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRT 299
I + +SG++AV+ Y F + GS I + CT+++G++ F++TF L+DR
Sbjct: 299 ISLGLMFFQQLSGINAVIFYTVQIF-QDAGSTIDENLCTIIVGVVNFIATFIATLLIDRL 357
Query: 300 GRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLV 359
GR+ LL +S I+ + G ++ + N D+S W+PL S F + +S+G GP+
Sbjct: 358 GRKMLLYISDIAMIITLMTLGGFFYVKNNGG-DVSHIGWLPLASFVIFVLGFSLGFGPIP 416
Query: 360 PTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGV 419
+ GE P RG A V T +F+V K + I G + F+++ C++ V
Sbjct: 417 WLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLV 476
Query: 420 LVYFIIPESKGKTFAQIQEELNKHIAHKSKLKE 452
V +PE++GK+ I+ ++ + S +
Sbjct: 477 FVIMYVPETQGKSLEDIERKMCGRVRRMSSVAN 509
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 145/441 (32%), Positives = 232/441 (52%), Gaps = 17/441 (3%)
Query: 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV 62
G S + SP L K RN T E+T SWV I+ L L I G L++Y+
Sbjct: 360 GFSSAYTSPALVSMKD------RNITSFEVTDQSGSWVGGIMPLAGLAGGILGGPLIEYL 413
Query: 63 GRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCR 122
GRK +L T +IISWLL+ HV ++ V R + G ++G+ P+Y+GE + R
Sbjct: 414 GRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQPEVR 473
Query: 123 GALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGR 182
G L N GILL + G Y+D+ LA++ +P+ FL+ +PE+P + + +GR
Sbjct: 474 GTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRGR 533
Query: 183 DVDARKSLFWLRGGRESSKDKINLELSNI---KQDVEREMKLSDDFMDIISTPANRRSLL 239
D ARK+L WLRG K ++ EL I QD ER S +D++ AN + LL
Sbjct: 534 DDRARKALQWLRG----KKADVDPELKGIIKSHQDAERHASQS-AMLDLMKK-ANLKPLL 587
Query: 240 IVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRT 299
I + +SG++AV+ Y F + GS I + CT+++G++ F++TF L+DR
Sbjct: 588 ISLGLMFFQQLSGINAVIFYTVQIF-QDAGSTIDENLCTIIVGVVNFIATFIATMLIDRL 646
Query: 300 GRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLV 359
GR+ LL +S I+ + G ++ + +N D+S+ W+PL + + + +S+G GP+
Sbjct: 647 GRKMLLYISDVAMIITLMTLGGFFYV-KNSGQDVSQVGWLPLAAFVIYVLGFSLGFGPIP 705
Query: 360 PTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGV 419
+ GE P RG A V T +F+V K + I + G + F+++ C+I
Sbjct: 706 WLMMGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLA 765
Query: 420 LVYFIIPESKGKTFAQIQEEL 440
V F +PE++GK+ I+ ++
Sbjct: 766 FVIFYVPETQGKSLEDIERKM 786
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 143/438 (32%), Positives = 231/438 (52%), Gaps = 11/438 (2%)
Query: 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV 62
G S + SP L K RN T E+T SWV I+ L L I G +++Y+
Sbjct: 347 GFSSAYTSPALVSMKD------RNITSFEVTDQSGSWVGGIMPLAGLAGGILGGPMIEYL 400
Query: 63 GRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCR 122
GRK +L T +IISWLL+ HV ++ V R + GL +GI P+Y+GE + R
Sbjct: 401 GRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIASLSLPVYLGETVQPEVR 460
Query: 123 GALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGR 182
G L N GILL + G Y+D+ LA++ +P+ FL+ +PE+P + + + R
Sbjct: 461 GTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRNR 520
Query: 183 DVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQ 242
+ ARK+L WLRG + + ++ +S QD ER S +D+++ AN + LLI
Sbjct: 521 EDRARKALQWLRGRKADVEPELK-GISKSHQDAERHAS-SSAMLDLLNK-ANLKPLLISL 577
Query: 243 IVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRR 302
+ +SG++AV+ Y F ++ GS I CT+++G++ F++TF L+DR GR+
Sbjct: 578 GLMFFQQLSGINAVIFYTVQIF-QSAGSTIDEKLCTIIVGVVNFIATFIATVLIDRLGRK 636
Query: 303 PLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTL 362
LL +S I+ + GT++ + N D+S+ W+PL + F V +S+G GP+ +
Sbjct: 637 ILLYISDVAMIITLMTLGTFFYMKNNGD-DVSEIGWLPLAAFVVFVVGFSLGFGPIPWLM 695
Query: 363 QGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVY 422
GE P RG A V T +F+V K + I G + F+++ CI+ + V
Sbjct: 696 MGEILPGKIRGSAASVATAFNWSCTFVVTKTFADITASIGNHGAFWMFGSICIVGLLFVI 755
Query: 423 FIIPESKGKTFAQIQEEL 440
+PE++GK+ I+ ++
Sbjct: 756 VYVPETQGKSLEDIERKM 773
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Anopheles gambiae (taxid: 7165) |
| >sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/458 (31%), Positives = 246/458 (53%), Gaps = 27/458 (5%)
Query: 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV 62
G S G+ SP + NIT +++T E +WV ++ L LV I G L++Y+
Sbjct: 66 GFSSGYTSPAV--LTMNIT--------LDITKEEITWVGGLMPLAALVGGIVGGPLIEYL 115
Query: 63 GRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCR 122
GRK ++ T + I W+L+ +V +++ R + G+ +GIV P+YIGE + R
Sbjct: 116 GRKKTIMGTAVPFTIGWMLIANAINVVMVFAGRVICGVCVGIVSLAFPVYIGETIQPEVR 175
Query: 123 GALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGR 182
GAL NTGILL + VG Y+D+ LA+ IPV F + I PE+P + + K R
Sbjct: 176 GALGLLPTAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMILTPETPRWYVSKAR 235
Query: 183 DVDARKSLFWLRGGRES-SKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIV 241
+ARKSL WLRG + K+ +L +S + D + F + S +R L V
Sbjct: 236 VQEARKSLRWLRGKNVNIEKEMRDLTISQTESDRTG----GNAFKQLFS----KRYLPAV 287
Query: 242 QI---VAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDR 298
I + + ++G++AV+ YA+S F + GS + + ++++G++ F+STF L+DR
Sbjct: 288 MISLGLMLFQQLTGINAVIFYAASIF-QMSGSSVDENLASIIIGVVNFISTFIATMLIDR 346
Query: 299 TGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPL 358
GR+ LL +S + L G Y+ L +N+ +D++ + W+PL + + + +SIG GP+
Sbjct: 347 LGRKVLLYISSVAMITTLLALGAYFYLKQNH-IDVTAYGWLPLACLVIYVLGFSIGFGPI 405
Query: 359 VPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICG 418
+ GE PS RG A + T +F+V K +Q I D ++ +++++ CI
Sbjct: 406 PWLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFAVICIGGL 465
Query: 419 VLVYFIIPESKGKTFAQIQEEL---NKHIAHKSKLKEQ 453
+ V F +PE+KGK+ +I+ +L ++ + + SK E
Sbjct: 466 LFVIFFVPETKGKSLEEIEMKLTSGSRRVRNISKQPEN 503
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Bombyx mori (taxid: 7091) |
| >sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 132/428 (30%), Positives = 225/428 (52%), Gaps = 7/428 (1%)
Query: 28 TYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKH 87
T ++T E+SWV I+ L L I G ++Y+GRK +L T +I++WLL+ F
Sbjct: 77 TSFKVTEQEASWVGGIMPLAGLAGGIAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANS 136
Query: 88 VYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV 147
++++ R + G +GI P+Y+GE + RG L N GIL+ + G YV
Sbjct: 137 IWMVLAGRALSGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYV 196
Query: 148 DYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLE 207
++ LA++ ++P+ F++ + +PE+P + + +GR+ ARK+L WLRG K + E
Sbjct: 197 NWSGLAFIGSILPIPFMVLTLLIPETPRWFVTRGREERARKALQWLRG----KKADVEPE 252
Query: 208 LSNI-KQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFAR 266
L I K E E S + + + +N + LLI + +SG++AV+ Y S F +
Sbjct: 253 LKGIVKSHCEAERHASQNAIFDLMKRSNLKPLLIALGLMFFQQLSGINAVIFYTVSIF-K 311
Query: 267 TEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLS 326
GS I + CT+++G++ F +TF L+DR GR+ LL +S I+ L GT++
Sbjct: 312 DAGSTIDENLCTIIVGVVNFGATFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYY- 370
Query: 327 ENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVI 386
+N D+S W+PL S + + +S G+GP+ + GE P RG A V T
Sbjct: 371 KNSGNDVSNIGWLPLASFVIYVIGFSSGVGPIPWLMLGEILPGKIRGSAASVATGFNWTC 430
Query: 387 SFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEELNKHIAH 446
+F+V K + I G + F+ + + C+I V F +PE++GK+ +I+ ++ +
Sbjct: 431 TFIVTKTFADIVAAIGNHGAFWFFGVICLIGLFFVIFFVPETQGKSLEEIERKMMGRVRR 490
Query: 447 KSKLKEQR 454
S + +
Sbjct: 491 MSSVANMK 498
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High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Polypedilum vanderplanki (taxid: 319348) |
| >sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 221/416 (53%), Gaps = 5/416 (1%)
Query: 25 RNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF 84
RN T E+T +SWV I+ L L I G ++Y+GR+ +L T +I+S LL+
Sbjct: 438 RNMTSFEVTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAIPFIVSSLLIAC 497
Query: 85 TKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG 144
+V ++ RF+ G +GI P+Y+GE + RG L N GILL + G
Sbjct: 498 AVNVAMVLAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAG 557
Query: 145 PYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKI 204
Y+D+ LA++ +PV FL+ +PE+P + + +GR+ ARK+L WLR G+E+ +
Sbjct: 558 TYMDWSMLAFLGAALPVPFLILMFLIPETPRWFVSRGREEKARKALSWLR-GKEADVEPE 616
Query: 205 NLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTF 264
L + D +R+ + M+++ N + L I + +SG++AV+ Y S F
Sbjct: 617 LKGLMRSQADADRQA-TQNKMMELLKR-NNLKPLSISLGLMFFQQLSGINAVIFYTVSIF 674
Query: 265 ARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYL 324
+ GS I + CT+++GI+ F++TF L+DR GR+ LL VS I+ + G ++
Sbjct: 675 -KDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFY 733
Query: 325 LSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLT 384
+++ D+S+ W+PL + + +S+G GP+ + GE PS RG A V T
Sbjct: 734 C-KSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNW 792
Query: 385 VISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEEL 440
+F+V K +Q + D G + F+++ C I V +PE++GKT I+ ++
Sbjct: 793 SCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKM 848
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 221/416 (53%), Gaps = 5/416 (1%)
Query: 25 RNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF 84
RN T E+T +SWV I+ L L I G ++Y+GR+ +L T +I+S LL+
Sbjct: 439 RNMTSFEVTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAIPFIVSSLLIAC 498
Query: 85 TKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG 144
+V ++ RF+ G +GI P+Y+GE + RG L N GILL + G
Sbjct: 499 AVNVAMVLAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAG 558
Query: 145 PYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKI 204
Y+D+ LA++ +PV FL+ +PE+P + + +GR+ ARK+L WLR G+E+ +
Sbjct: 559 TYMDWSMLAFLGAALPVPFLILMFLIPETPRWFVSRGREEKARKALSWLR-GKEADVEPE 617
Query: 205 NLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTF 264
L + D +R+ + M+++ N + L I + +SG++AV+ Y S F
Sbjct: 618 LKGLMRSQADADRQA-TQNKMMELLKR-NNLKPLSISLGLMFFQQLSGINAVIFYTVSIF 675
Query: 265 ARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYL 324
+ GS I + CT+++GI+ F++TF L+DR GR+ LL VS I+ + G ++
Sbjct: 676 -KDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFY 734
Query: 325 LSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLT 384
+++ D+S+ W+PL + + +S+G GP+ + GE PS RG A V T
Sbjct: 735 C-KSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNW 793
Query: 385 VISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEEL 440
+F+V K +Q + D G + F+++ C I V +PE++GKT I+ ++
Sbjct: 794 SCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKM 849
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila persimilis (taxid: 7234) |
| >sp|B4MYA4|TRET1_DROWI Facilitated trehalose transporter Tret1 OS=Drosophila willistoni GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 220/426 (51%), Gaps = 6/426 (1%)
Query: 26 NETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT 85
N T E+T +SWV I+ L L+ I G ++Y+GR+ +LTT +I+S LL+
Sbjct: 442 NITSFEVTPQAASWVGGIMPLAGLLGGIAGGPFIEYLGRRNTILTTAVPFIVSSLLIACA 501
Query: 86 KHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP 145
++ ++ + RF+ G +GI P+Y+GE + RG L N GILL + G
Sbjct: 502 VNITMVLLGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGT 561
Query: 146 YVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKIN 205
Y+D+ LA++ +PV FL+ +PE+P + + +GR+ ARK+L WLRG + +
Sbjct: 562 YMDWSMLAFLGAALPVPFLILMFLIPETPRWYVSRGREERARKALSWLRG----KEADVE 617
Query: 206 LELSN-IKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTF 264
EL ++ + + + + M + N + L I + +SG++AV+ Y F
Sbjct: 618 PELKGLLRSQADADRSATQNTMLELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVQIF 677
Query: 265 ARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYL 324
+ GS I + CT+++GI+ F++TF L+DR GR+ LL VS I+ + G ++
Sbjct: 678 -KDAGSTIDGNVCTIIVGIVNFMATFIGIILIDRAGRKILLYVSNVAMIITLFVLGGFFY 736
Query: 325 LSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLT 384
+ +D+S W+PL + + +S+G GP+ + GE P+ RG A V T
Sbjct: 737 CKDKAGIDVSNVGWLPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNW 796
Query: 385 VISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEELNKHI 444
+F+V K +Q + D G Y F+++ C I V +PE++GKT I+ ++ +
Sbjct: 797 TCTFVVTKTFQDMLDVIGSYGAFWLFGAICFIGLFFVIIYVPETQGKTLEDIERKMMGRV 856
Query: 445 AHKSKL 450
S +
Sbjct: 857 RRMSSV 862
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila willistoni (taxid: 7260) |
| >sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 130/416 (31%), Positives = 220/416 (52%), Gaps = 5/416 (1%)
Query: 25 RNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF 84
RN T E+T +SWV I+ L L I G ++Y+GR+ +L T +I+S LL+
Sbjct: 436 RNITSFEVTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAVPFIVSSLLIAC 495
Query: 85 TKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG 144
+V ++ RF+ G +GI P+Y+GE + RG L N GILL + G
Sbjct: 496 AVNVAMVLAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAG 555
Query: 145 PYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKI 204
Y+D+ LA++ +PV FL+ +PE+P + + +GR+ ARK+L WLR G+E+ +
Sbjct: 556 TYMDWSMLAFLGAALPVPFLVLMFLIPETPRWFVSRGREERARKALSWLR-GKEADVEPE 614
Query: 205 NLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTF 264
L + D +R+ + ++++ +N + L I + +SG++AV+ Y S F
Sbjct: 615 LKGLMRSQADADRQ-GTQNTMLELLKR-SNFKPLSISLGLMFFQQLSGINAVIFYTVSIF 672
Query: 265 ARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYL 324
+ GS I + CT+++G++ FL+TF L+DR GR+ LL VS I+ + G ++
Sbjct: 673 -KDAGSTIDGNVCTIIVGVVNFLATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFY 731
Query: 325 LSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLT 384
+ + D+S W+PL + + +S+G GP+ + GE P+ RG A V T
Sbjct: 732 C-KAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNW 790
Query: 385 VISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEEL 440
+F+V K +Q + D G + F+++ C I V +PE++GKT I+ ++
Sbjct: 791 TCTFVVTKTFQDMIDVMGAHGAFWLFGAICFIGLFFVILYVPETQGKTLEDIERKM 846
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila ananassae (taxid: 7217) |
| >sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 232/455 (50%), Gaps = 14/455 (3%)
Query: 1 MAGTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVD 60
M G S + SP L + N T F E+T + W+ SI+ L L+ I G ++
Sbjct: 55 MIGYSSSYTSPALVSMRDNTTATF------EVTMDMAMWIGSIMPLSALIGGIIGGPCIE 108
Query: 61 YVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAK 120
Y+GR+ +L+T ++ WL + +V ++ V R + G +G+ P+Y+GE +
Sbjct: 109 YIGRRNTILSTALPFLAGWLFIALATNVAMILVGRSICGFCVGVASLSLPVYLGESIQPE 168
Query: 121 CRGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMK 180
RG+L N+GIL+ +T G Y+ + LA + IP++FL+ +PE+P + I K
Sbjct: 169 VRGSLGLLPTVFGNSGILMCFTAGMYLAWRNLALLGACIPIIFLILMFLIPETPRWYISK 228
Query: 181 GRDVDARKSLFWLRGGRESSKDKINLELSNI-KQDVEREMKLSDDFMDIISTPANRRSLL 239
G+ +ARKSL WLRG I+ EL +I K +E E ++ + + + + +
Sbjct: 229 GKIKEARKSLQWLRG----KTADISEELDSIQKMHIESERIATEGALIELFRKNHIKPVF 284
Query: 240 IVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRT 299
I + SG++AV+ Y F + GS + + T+++G++ F+STF A ++DR
Sbjct: 285 ISLGLMFFQQFSGINAVIFYTVQIF-KDSGSTVDENLSTIIVGLVNFISTFVAAMIIDRL 343
Query: 300 GRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLV 359
GR+ LL +S I+ GT++ + E +D++ F WIPL+S+ + + +S G GP+
Sbjct: 344 GRKMLLYISSILMCITLFTFGTFFYVKE--LMDVTAFGWIPLMSLIVYVIGFSFGFGPIP 401
Query: 360 PTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGV 419
+ GE P RG A V T +F+V K Y+ + H G Y F+++ + +
Sbjct: 402 WLMMGEILPVKIRGTAASVATAFNWSCTFVVTKTYEDLVLHIGPYGTFWLFGTLVAVAFI 461
Query: 420 LVYFIIPESKGKTFAQIQEELNKHIAHKSKLKEQR 454
V +PE++G++ +I+ + S + +
Sbjct: 462 FVIICVPETRGRSLEEIERRFAGPVRRTSAIANLK 496
|
Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Apis mellifera ligustica (taxid: 7469) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | ||||||
| 328699079 | 480 | PREDICTED: facilitated trehalose transpo | 0.939 | 0.935 | 0.523 | 1e-131 | |
| 291461587 | 450 | sugar transporter 14 [Nilaparvata lugens | 0.895 | 0.951 | 0.377 | 7e-86 | |
| 328777059 | 502 | PREDICTED: facilitated trehalose transpo | 0.937 | 0.892 | 0.381 | 3e-85 | |
| 380024226 | 476 | PREDICTED: facilitated trehalose transpo | 0.943 | 0.947 | 0.374 | 8e-84 | |
| 307208340 | 594 | Solute carrier family 2, facilitated glu | 0.956 | 0.769 | 0.377 | 6e-82 | |
| 307175829 | 461 | Sugar transporter ERD6-like 4 [Camponotu | 0.937 | 0.971 | 0.359 | 5e-81 | |
| 340725285 | 472 | PREDICTED: facilitated trehalose transpo | 0.899 | 0.911 | 0.363 | 2e-79 | |
| 350403986 | 476 | PREDICTED: facilitated trehalose transpo | 0.939 | 0.943 | 0.357 | 3e-79 | |
| 328715719 | 457 | PREDICTED: facilitated trehalose transpo | 0.897 | 0.938 | 0.368 | 2e-78 | |
| 307182574 | 469 | Sugar transporter ERD6-like 16 [Camponot | 0.933 | 0.950 | 0.356 | 6e-77 |
| >gi|328699079|ref|XP_001946696.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 324/466 (69%), Gaps = 17/466 (3%)
Query: 1 MAGTSMGWPSPVL-RLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLV 59
MAGTS+GWPSPVL +L +T NE + SW+++++ELGNL++PIP G LV
Sbjct: 26 MAGTSLGWPSPVLAKLSNGGLTMAATNE--------QQSWMIAMLELGNLLSPIPFGVLV 77
Query: 60 DYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGA 119
D VGRKPCLL TGPLYI+SWL+V+ + + VLY VR +QG +GI+ TVAP+YIGEI+G
Sbjct: 78 DVVGRKPCLLLTGPLYIVSWLMVMCSDTIGVLYWVRLLQGACIGIITTVAPIYIGEIAGD 137
Query: 120 KCRGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIM 179
RGALSTFF GMLN GIL Y VGP V YD L Y SL++P FL T +W+PESPY+ ++
Sbjct: 138 SIRGALSTFFNGMLNAGILYVYCVGPLVSYDALTYYSLLVPCAFLGTCLWIPESPYYYVL 197
Query: 180 KGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLL 239
+ D A +S+ WL G E D + EL IK + +++ D+ + +R++ L
Sbjct: 198 RDDDKKAHESVAWLHGNAE--PDVVVRELMRIKAEARDDLQDKGSIRDLFGSRCSRKAFL 255
Query: 240 IVQIVAVADVISGMSAVLPYASSTFARTE-GSLITPDECTLLLGILVFLSTFPTAFLVDR 298
IVQIVA ADV+SGM+ VL YASSTFA + ++PD+ T+LLG+L+F +TF T +LVD+
Sbjct: 256 IVQIVAAADVLSGMTTVLAYASSTFAHADTDKTLSPDQFTMLLGVLIFCTTFVTGYLVDK 315
Query: 299 TGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPL 358
GRRPLLL SCFG G +L+ G YY + + S WIP +I FAVIYSIGLGPL
Sbjct: 316 LGRRPLLLFSCFGCGAFELVTGLYYY--KRWVGFESLGAWIPFTAIGSFAVIYSIGLGPL 373
Query: 359 VPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICG 418
+PTLQGE FPSN RGLA +T++TLTVISF+ +KMYQVI D +G+++N++IY GC++
Sbjct: 374 LPTLQGEMFPSNVRGLASAITSVTLTVISFVGLKMYQVITDQWGIHVNYFIYGTGCLMSF 433
Query: 419 VLVYFIIPESKGKTFAQIQEELNKHIAHK-SKLKEQRKQNKINRNN 463
+L+Y +PE+KGKTFAQIQ E+ K I + S+ K +RK IN N
Sbjct: 434 LLIYRFLPETKGKTFAQIQNEIMKTIDDRPSRGKTRRK--PINANT 477
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|291461587|dbj|BAI83428.1| sugar transporter 14 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 166/440 (37%), Positives = 253/440 (57%), Gaps = 12/440 (2%)
Query: 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV 62
G + WPSP LR + + + + E SWVV+ +++GN+V+PIP +LVD +
Sbjct: 21 GCWLAWPSPALRKLE------VQGGANVFIEGDEISWVVASLDVGNMVSPIPASYLVDRI 74
Query: 63 GRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCR 122
GRKP LL TGPLY+I W+L Y L++ RF+ G+ GI F++ PMY+GEI+ + R
Sbjct: 75 GRKPVLLATGPLYLICWMLTFVPGTPYFLFLSRFLSGIGKGIAFSICPMYLGEIASVEVR 134
Query: 123 GALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGR 182
GA+ST G L G LL + VGP V Y L + + P++F MTF+W+PESPY +M+ +
Sbjct: 135 GAISTISTGALWGGSLLMFIVGPLVSYQWLNTIGAIFPIIFFMTFLWIPESPYGCLMRNK 194
Query: 183 DVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQ 242
+ARKSL WLR G + + I EL +K++VE EMK F+D+++ P+NR++ IV
Sbjct: 195 VEEARKSLQWLREGAD--QLTIEKELEQMKENVEEEMKTKGTFVDLVAIPSNRKATTIVM 252
Query: 243 IVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRR 302
+ + + G+SAVL ++S+T + ++ GI++ + F LVD GR+
Sbjct: 253 VSSAFQRLCGISAVLAFSSTTLPNVGFQFFHVSQVIVVFGIVLTIGNFLATPLVDHLGRK 312
Query: 303 PLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTL 362
PLL S G IS +G YYLL + D + W+P +++ CF + +SIGLG + TL
Sbjct: 313 PLLFASSIGLAISTATSGFYYLLRK----DPEQAAWLPYMALVCFGIFHSIGLGVIPSTL 368
Query: 363 QGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVY 422
E FP+N + A V++I SF+ KMY + G + F+ +S+ +I +
Sbjct: 369 LSELFPANVKSRAAAVSSIVFAAASFVTNKMYHPVQHSIGTHAMFFFFSMNAVIFTIFNA 428
Query: 423 FIIPESKGKTFAQIQEELNK 442
I E+KGK+F IQ+ L
Sbjct: 429 LFIFETKGKSFPDIQKRLKS 448
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328777059|ref|XP_396250.3| PREDICTED: facilitated trehalose transporter Tret1-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 178/467 (38%), Positives = 286/467 (61%), Gaps = 19/467 (4%)
Query: 2 AGTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY 61
AGT +GW SP+L KS + + +TS ++SW+ S LG++ + I GF+VD
Sbjct: 25 AGTQIGWTSPILPKLKSP-------NSRVPLTSDDASWIASFSLLGSIPSIILSGFIVDR 77
Query: 62 VGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKC 121
+GRK LL +G +IISW+L+I + YVLY+ RF+ G+ +GI + + PMYIGEI+ +
Sbjct: 78 LGRKTSLLISGIPHIISWILIIVAWNPYVLYLSRFIGGIGLGIGYVICPMYIGEIADKEI 137
Query: 122 RGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKG 181
RG+L +F M+ G L + +GP+V Y+ LAY V+PV+FL+TF WMPESPY+L+MK
Sbjct: 138 RGSLGSFIKLMVTFGELYAHAIGPFVSYECLAYSCAVMPVIFLLTFGWMPESPYYLLMKN 197
Query: 182 RDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIV 241
R+ A SL L+ R +++D++ ++ +++ + +++ D+ +T NRR++LI
Sbjct: 198 REDKAINSLKRLK--RYATEDQLEEDMEQMQKTMIKDLSDRGYIWDLFNTKGNRRAMLIS 255
Query: 242 QIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGR 301
+ + SG++A+ Y + +L + ++L +L ++ A LVD+ GR
Sbjct: 256 FGLQLILQFSGLAAIESYTQEILEEGDTNL-SAAVAVIILSVLQLVAGVGAAALVDKLGR 314
Query: 302 RPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPT 361
RPLLL+S F G+S ++AGT+YLL VD++ F W+ SI + +I ++GL PL
Sbjct: 315 RPLLLISTFLGGLSLIVAGTFYLLKLYMLVDMTGFGWVLYASIIFYELIIALGLNPLAYM 374
Query: 362 LQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLV 421
+ GE FP+N +G A + ++++F V KMYQVI D YGVY +F +++ C + + +
Sbjct: 375 MLGELFPTNVKGAAVSAANLWASLLAFFVSKMYQVISDFYGVYTSFGWFAISCFLGIIFI 434
Query: 422 YFIIPESKGKTFAQIQEELNKHIAHKSKLKEQRKQNKINRNNEKADN 468
F++PE+KGKT +IQEELN K K++R KIN+N ++A N
Sbjct: 435 LFMVPETKGKTLLEIQEELN------CKRKQER---KINKNKQEAHN 472
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380024226|ref|XP_003695906.1| PREDICTED: facilitated trehalose transporter Tret1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 176/470 (37%), Positives = 284/470 (60%), Gaps = 19/470 (4%)
Query: 2 AGTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY 61
AGT +GW SP+L KS ++ + +TS ++SW+ S LG++ + I GF+VD
Sbjct: 25 AGTQIGWTSPILPKLKSP-------DSRVPLTSDDASWIASFSLLGSIPSIILSGFIVDR 77
Query: 62 VGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKC 121
+GRK LL G +IISW+L+I + Y+LY+ RF+ G+ +GI + + PMYIGEI+ +
Sbjct: 78 LGRKTSLLIAGIPHIISWILIIVAWNPYILYLSRFIGGIGLGIGYVICPMYIGEIADKEI 137
Query: 122 RGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKG 181
RG+L +F M+ G L +T+GP+V Y+ LAY VIPV+FL+TF WMPESPY+L+MK
Sbjct: 138 RGSLGSFIKLMVTFGELYAHTIGPFVSYECLAYSCAVIPVIFLLTFGWMPESPYYLLMKN 197
Query: 182 RDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIV 241
R+ A SL L+ R +++D++ ++ +++ + +++ D+ +T NRR++LI
Sbjct: 198 REDKAINSLKRLK--RYATEDQLEEDMEQMQKTMIKDLSDRGYIWDLFNTKGNRRAMLIS 255
Query: 242 QIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGR 301
+ + SG++A+ Y + +L + ++L +L ++ A LVD+ GR
Sbjct: 256 FGLQLILQFSGLAAIESYTQEILEEGDTNL-SAAVAVIILSVLQLVAGVGAAALVDKLGR 314
Query: 302 RPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPT 361
RPLLLVS F G+S +AG +YL VD++ F W+ S+ + +I ++GL PL
Sbjct: 315 RPLLLVSTFLGGLSLTVAGAFYLFKFYMLVDITGFGWVLYASVIFYELIIALGLNPLAYM 374
Query: 362 LQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLV 421
+ GE FP+N +G A + ++++F V KMYQVI D YGVY +F +++ C + +
Sbjct: 375 MLGELFPTNVKGAAVSAANLWASLLAFFVSKMYQVISDFYGVYTSFGWFAISCFFGIIFI 434
Query: 422 YFIIPESKGKTFAQIQEELNKHIAHKSKLKEQRKQNKINRNNEKADNNNV 471
F++PE+KGKT +IQEELN K K++R KIN+N ++A + +
Sbjct: 435 LFMVPETKGKTLLEIQEELN------CKRKQER---KINKNKQEAHVSTI 475
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307208340|gb|EFN85747.1| Solute carrier family 2, facilitated glucose transporter member 8 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 178/472 (37%), Positives = 273/472 (57%), Gaps = 15/472 (3%)
Query: 1 MAGTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVD 60
+ G+ +GW SP+L + KS E+++ +TS ++SW+ S LG + + F+VD
Sbjct: 106 ITGSHIGWTSPILPILKST-------ESHVPITSDDASWIASFYLLGTIPGCVLAAFIVD 158
Query: 61 YVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAK 120
++GRK LL G + WLL++ + YVLY RF+ G+ G+V+ V PMYIGEI+ +
Sbjct: 159 WLGRKTSLLIAGVPLTVGWLLIVIAWNPYVLYTSRFISGIGQGVVYVVCPMYIGEIADKE 218
Query: 121 CRGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMK 180
RG+L +F M+ G L + VGP+V YD LAYV L+IP+ F +TF WMPESPYFL+M+
Sbjct: 219 IRGSLGSFIKLMVTFGELYAHAVGPFVSYDCLAYVCLLIPLAFFLTFAWMPESPYFLLMR 278
Query: 181 GRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLI 240
R+ A SL L+ R +S+D++ EL +++ V R++ F D+ STP NRR+++I
Sbjct: 279 NRNECAMASLRTLK--RNASEDQLEEELEQMQKTVIRDLSDQGRFRDLFSTPGNRRAVII 336
Query: 241 VQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTG 300
+ + SG+ A+ Y E L +LL + ++ A LVDR G
Sbjct: 337 SFGLQLILQFSGICAIESYTQEILEEGEAGL-PASIAVILLSLFQLVAGVGAAVLVDRLG 395
Query: 301 RRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVP 360
RRPLLL + GIS IAGT+YLL +D + + WI S+ + +I ++GL PL
Sbjct: 396 RRPLLLSTTLLGGISLTIAGTFYLLKTELAIDTAGYGWILHASVIFYELIIALGLNPLPY 455
Query: 361 TLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVL 420
+ GE FP+N +G A + + ++++F+V KMYQVI D GVY F +++ C + +
Sbjct: 456 MMLGELFPTNVKGAAVSLANLVSSLLAFIVSKMYQVISDFCGVYAAFGWFAISCFLGVIF 515
Query: 421 VYFIIPESKGKTFAQIQEELN-----KHIAHKSKLKEQRKQNKINRNNEKAD 467
+ F++PE+KGK+ +IQEEL+ K + KLK + Q KI + D
Sbjct: 516 IVFVVPETKGKSLLEIQEELHCKKKSKRTGQEQKLKNEHIQIKIRSDTRILD 567
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307175829|gb|EFN65644.1| Sugar transporter ERD6-like 4 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 167/464 (35%), Positives = 271/464 (58%), Gaps = 16/464 (3%)
Query: 2 AGTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY 61
AG+ +GW SP L + KSN ++I +TS ++SW+ S LG + I F+VD+
Sbjct: 6 AGSHIGWTSPSLPMLKSN-------SSHIRITSDDASWIASFYLLGTVPGCILAAFIVDW 58
Query: 62 VGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKC 121
+GRK LL G + ++++I + Y+LY RF+ G+ G+V+ V PMYIGEI+ +
Sbjct: 59 LGRKMSLLIAGVPLFVGFIMIIIAWNPYILYASRFISGIGQGVVYVVCPMYIGEIADKEI 118
Query: 122 RGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKG 181
RGAL + M+ G L + +GP++ Y LAY+ L++P++F +TF MPESPYFL+M+
Sbjct: 119 RGALGSLIKLMVTFGELYAHAIGPFMSYQNLAYICLLLPLMFFLTFSSMPESPYFLLMRN 178
Query: 182 RDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIV 241
R DA L L+ R S+D++ ++L +++ V R+++ D+ +TP NRR+++I
Sbjct: 179 RQDDAMTILKRLK--RRVSEDQLEIDLQEMQKTVIRDLRDRGHLGDLFNTPGNRRAIIIS 236
Query: 242 QIVAVADVISGMSAVLPYASSTFARTEGSLITPDECT-LLLGILVFLSTFPTAFLVDRTG 300
+ + SG++A+ Y +G+L P T +LL + ++ LVD+ G
Sbjct: 237 FGLQLILQCSGIAAIESYTQEILEEGDGAL--PASITVILLSLFQLIAGVGATILVDKLG 294
Query: 301 RRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVP 360
RRPLLL + F +GI+ IAG +Y L Y V+++ + WI S+ + +I ++GL PL
Sbjct: 295 RRPLLLSTTFLAGITLSIAGIFYFLKFVYKVNMTGYGWILHSSVIFYELIIALGLNPLPY 354
Query: 361 TLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVL 420
+ GE F +N +G A T + ++++F V K+YQVI D+YGVY F ++ C +
Sbjct: 355 MMLGELFSTNIKGAAVSSTNVMSSLLAFAVSKLYQVISDYYGVYTTFGCFACSCFAGLIF 414
Query: 421 VYFIIPESKGKTFAQIQEELNKHIAHKSKLKEQRKQNKINRNNE 464
+ I+PE+KGK+ +IQEEL+ K+K K +RK RN +
Sbjct: 415 IMLIVPETKGKSLLEIQEELH----CKNKKKTERKSQNRKRNEQ 454
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340725285|ref|XP_003401003.1| PREDICTED: facilitated trehalose transporter Tret1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/440 (36%), Positives = 268/440 (60%), Gaps = 10/440 (2%)
Query: 2 AGTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY 61
+G+ +GW SP+L KS+ E+Y+ +TS ++SW+ S + LG++ I F+VD
Sbjct: 25 SGSHIGWTSPILPKLKSS-------ESYMPITSDDASWIASFVLLGSIPGNIIAAFIVDR 77
Query: 62 VGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKC 121
+GRK CLL G +SW+L+I YVLY+ RF+ G+ +G+ + V PMYIGEI+ +
Sbjct: 78 LGRKMCLLLAGIPLTVSWILIIVAWCPYVLYISRFIGGIGLGVAYVVCPMYIGEIADKEI 137
Query: 122 RGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKG 181
RG+L +F M+ G L + +GP+V Y+ LAY VIP++F +TF WMPESPY+L+M+
Sbjct: 138 RGSLGSFIKLMVTFGELYAHAIGPFVSYECLAYSCAVIPIIFFLTFGWMPESPYYLLMRN 197
Query: 182 RDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIV 241
R+ A +L L+ R +++D++ ++ +++ V R++ + D+ +TP NRR+++I
Sbjct: 198 REDKAMNNLKCLK--RYATEDQLEEDIEQMQKTVLRDLSDKGNIWDLFNTPGNRRAVVIS 255
Query: 242 QIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGR 301
+ + SG++A+ Y + L + ++L +L ++ A LVDR GR
Sbjct: 256 FGLQLVLQFSGLAAIESYTQEILEEADTDL-SAGIAVIVLSVLQLIAGIGAAALVDRLGR 314
Query: 302 RPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPT 361
RPLLLV+ G+S + GT+YLL ++++ F W+ S+ + +I ++GL PL
Sbjct: 315 RPLLLVTTLLGGLSLTVTGTFYLLKHYMLMNMTGFGWVLHASVIFYELIIALGLNPLSYM 374
Query: 362 LQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLV 421
+ GE FP+N +G A + + ++++F V KMYQV+ D GVY +F +++ C + V +
Sbjct: 375 MLGELFPTNVKGAAVSIANMWASLLAFFVSKMYQVVSDSCGVYTSFGWFAVSCFLGIVFI 434
Query: 422 YFIIPESKGKTFAQIQEELN 441
F++PE+KGK+ +IQEELN
Sbjct: 435 LFMVPETKGKSLLEIQEELN 454
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350403986|ref|XP_003486971.1| PREDICTED: facilitated trehalose transporter Tret1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/459 (35%), Positives = 273/459 (59%), Gaps = 10/459 (2%)
Query: 2 AGTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY 61
+G+ +GW SP+L KS+ E+Y+ +TS ++SW+ S + LG++ I F+VD
Sbjct: 25 SGSHIGWTSPILPKLKSS-------ESYMPITSDDASWIASFVLLGSIPGNIIAAFIVDR 77
Query: 62 VGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKC 121
+GRK CLL G ISW+L+I YVLYV RF+ G+ +G+ + V PMYIGEI+ +
Sbjct: 78 LGRKVCLLLAGIPLTISWILIIVAWCPYVLYVSRFIGGIGLGVAYVVCPMYIGEIADKEI 137
Query: 122 RGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKG 181
RG+L + M+ G L + +GP+V Y+ LAY VIP++F +TF WMPESPY+L+M+
Sbjct: 138 RGSLGSLIKLMVTFGELYAHAIGPFVSYECLAYSCAVIPIIFFLTFSWMPESPYYLLMRN 197
Query: 182 RDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIV 241
R+ A +L L+ R +++D++ ++ +++ V R++ + D+ +TP NRR+++I
Sbjct: 198 REDKATYNLKCLK--RYATEDQLEEDIEQMQKTVLRDLSDKGNIWDLFNTPGNRRAVVIS 255
Query: 242 QIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGR 301
+ + SG++A+ Y + L + ++L +L ++ A LVDR GR
Sbjct: 256 FGLQLVLQFSGLAAIESYTQEILEEADTDL-SAGIAVIVLSVLQLIAGIGAAALVDRLGR 314
Query: 302 RPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPT 361
RPLLLV+ G+S + GT+YLL +++ F W+ S+ + +I ++GL PL
Sbjct: 315 RPLLLVTTLLGGLSLTVTGTFYLLKHYVLANMTGFGWVLHASVIFYELIIALGLNPLSYM 374
Query: 362 LQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLV 421
+ GE FP+N +G A + + ++++F V KMYQVI D GVY +F +++ C + V +
Sbjct: 375 MLGELFPTNVKGAAVSIANMWASLLAFFVSKMYQVISDSCGVYTSFGWFAVSCFLGIVFI 434
Query: 422 YFIIPESKGKTFAQIQEELNKHIAHKSKLKEQRKQNKIN 460
F++PE+KGK+ +IQEELN + K + ++ +N
Sbjct: 435 LFMVPETKGKSLLEIQEELNCKKKKQQKCGKNNRKIHVN 473
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328715719|ref|XP_001943565.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/440 (36%), Positives = 257/440 (58%), Gaps = 11/440 (2%)
Query: 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV 62
G +GW SP++ ++ ++ I MT E+SW VS+I+ G ++ +P G L D
Sbjct: 24 GIILGWTSPIME-------ELLGPDSPIPMTVDETSWFVSVIDWGLILGSLPFGVLADRW 76
Query: 63 GRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCR 122
GRKP L GP+ + +W+ +++ L VRF QGL +TV P+Y GEI+G K R
Sbjct: 77 GRKPSLQIIGPMALATWVALLYVDTFQGLLAVRFAQGLLAAGAYTVLPVYAGEIAGPKIR 136
Query: 123 GALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGR 182
GAL T F M+ GIL Y G Y+DY L Y ++ PVVF F +PESP+F +MK R
Sbjct: 137 GALGTMFQIMMYVGILYVYAAGMYLDYTRLTYAAMAGPVVFCALFATIPESPHFYVMKNR 196
Query: 183 DVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQ 242
DA+++L WLRG + + ++ E+ + + + +EM+ + F ++ + + ++L+IVQ
Sbjct: 197 LADAKRALVWLRG--DDTGSSVDDEMDAVVECICKEMR-NASFTELFTDWVSLKALIIVQ 253
Query: 243 IVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRR 302
++V V++G++A++ YAS TFA + + ++ +L+ V S P+ L DR GRR
Sbjct: 254 GLSVFRVMAGVTALISYASITFAEMHVA-VDANKLSLVFACSVLFSALPSTVLADRVGRR 312
Query: 303 PLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTL 362
PL++VSC Y+ + T D++ + W+ ++++ +V +++GLG L+ T+
Sbjct: 313 PLMIVSCASCFAFDTAIFAYFYVDRCTTYDVTDYGWLCVLAVGGLSVAHTLGLGSLLSTI 372
Query: 363 QGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVY 422
E FPSNTR +A V TITLTV SFL +K+Y V+ D G+Y N+ I S+ +
Sbjct: 373 NCELFPSNTRSIANAVNTITLTVASFLALKIYPVLADDGGMYRNYLISSVFSFTSIISCL 432
Query: 423 FIIPESKGKTFAQIQEELNK 442
+PE+KGKTFA IQ +L K
Sbjct: 433 LWLPETKGKTFAAIQAQLRK 452
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307182574|gb|EFN69767.1| Sugar transporter ERD6-like 16 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 165/463 (35%), Positives = 258/463 (55%), Gaps = 17/463 (3%)
Query: 3 GTSMGWPSPVLRLFKSNITDMFRNETY-IEMTSAESSWVVSIIELGNLVTPIPIGFLVDY 61
G GW SP L + ++ETY + +TS E+SWV S++ LG + I F+V+
Sbjct: 19 GQYFGWASPSLPILLQG-----KDETYPVRLTSEEASWVASLLMLGAMTGSIICAFIVNI 73
Query: 62 VGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKC 121
+GRK +L IISWL++ F + LY+ RF+ GL+ G +T+ P+YIGEIS A
Sbjct: 74 IGRKNTMLFAAVPSIISWLMIAFATSSWELYISRFLAGLSTGFTYTITPLYIGEISPANI 133
Query: 122 RGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKG 181
RG + + G LEY +GP++ LA VSL+ P +F + F+W+PESPY L+ +
Sbjct: 134 RGNFGSMLTVISKIGTTLEYVIGPFLSVKHLALVSLIGPCLFFVIFVWLPESPYHLMRRN 193
Query: 182 RDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIV 241
A SL LRG K+ ++ E+ I++ V+ ++ + ++ PANRR+L+ V
Sbjct: 194 AKEKALNSLVQLRG-----KEDVHEEIDTIERSVKIDLANKSNLRELFCIPANRRALIAV 248
Query: 242 QIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGR 301
+ +SG+ AV YA F G+ + T++LG++ +ST F+ DR+GR
Sbjct: 249 VSLGTIHQLSGVQAVEQYAELIFNEM-GNNLEGKYSTMILGVVQVISTIVCMFITDRSGR 307
Query: 302 RPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPT 361
+ LL++S GS S + TY+ L N VD S W+P + + + +++S+GL L
Sbjct: 308 KLLLIISAIGSACSTAMVATYFNLQHN-NVDTSNLKWLPAVGVIMYVIMFSVGLSALPFA 366
Query: 362 LQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLV 421
+ GE F N + L + I +ISF V K+Y VI D+ G++++F+I++ GC + G L
Sbjct: 367 MIGELFSMNVKALGSMINMIIAGIISFGVTKLYLVIADNLGIHVSFWIFT-GCSLAGALF 425
Query: 422 YFI-IPESKGKTFAQIQEELNKH--IAHKSKLKEQRKQNKINR 461
I +PE+KGKT QIQEEL + + K+ K Q+K K R
Sbjct: 426 MLIYVPETKGKTLEQIQEELQRSSGVQIKNFQKTQKKLQKAYR 468
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | ||||||
| FB|FBgn0034247 | 465 | CG6484 [Drosophila melanogaste | 0.920 | 0.946 | 0.329 | 5.1e-67 | |
| FB|FBgn0037387 | 491 | CG1213 [Drosophila melanogaste | 0.905 | 0.881 | 0.340 | 8.5e-65 | |
| FB|FBgn0036316 | 539 | CG10960 [Drosophila melanogast | 0.891 | 0.790 | 0.343 | 7.6e-64 | |
| UNIPROTKB|Q17NV8 | 806 | Tret1 "Facilitated trehalose t | 0.912 | 0.540 | 0.322 | 2.7e-59 | |
| UNIPROTKB|B0WC46 | 517 | Tret1 "Facilitated trehalose t | 0.912 | 0.843 | 0.326 | 3.5e-59 | |
| UNIPROTKB|Q7PIR5 | 793 | Tret1 "Facilitated trehalose t | 0.918 | 0.553 | 0.32 | 4.5e-59 | |
| UNIPROTKB|A9ZSY3 | 505 | Tret1 "Facilitated trehalose t | 0.901 | 0.853 | 0.322 | 1.2e-56 | |
| UNIPROTKB|A5LGM7 | 504 | Tret1 "Facilitated trehalose t | 0.880 | 0.835 | 0.308 | 5.3e-56 | |
| UNIPROTKB|Q291H8 | 868 | Tret1 "Facilitated trehalose t | 0.889 | 0.489 | 0.309 | 1.1e-54 | |
| UNIPROTKB|B4GAP7 | 869 | Tret1 "Facilitated trehalose t | 0.889 | 0.489 | 0.309 | 1.1e-54 |
| FB|FBgn0034247 CG6484 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 149/452 (32%), Positives = 251/452 (55%)
Query: 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV 62
G S+GW SPV + N E ++S++ WV S++ LG V IPIGF +D++
Sbjct: 24 GASIGWSSPVENMITVN------TEYGFPISSSQFGWVSSLLTLGATVICIPIGFAIDWI 77
Query: 63 GRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCR 122
GR+P +L P Y++ W+L++F K+V +LY RF+ G+ G APMY EI+ R
Sbjct: 78 GRRPTMLALIPPYMVGWVLMLFAKNVTMLYFGRFILGMCGGAFCVTAPMYCTEITATALR 137
Query: 123 GALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGR 182
G + +FF ++ +G+L Y VG ++ T+ + ++PV+F + +MPESP +L MKGR
Sbjct: 138 GTIGSFFQLLIVSGVLYGYLVGAFLPLLTINILCAILPVIFAIIHFFMPESPVYLAMKGR 197
Query: 183 DVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSD-DFMDIISTPANRRSLLIV 241
+ DA K+L WLRG +++ D EL I ++ ++++ + + + + P + L I
Sbjct: 198 NDDAAKALQWLRG-KDADIDD---ELKEILEESQKQIDMPQVNILSSLRRPIVLKGLGIA 253
Query: 242 QIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGR 301
++ V +G++AVL Y++S F T GS I+ + TL++G+ ST ++D+ GR
Sbjct: 254 VLLQVFQQWTGINAVLFYSASIFEDT-GSDISGSDATLIIGVTQVTSTLVAVAIIDKAGR 312
Query: 302 RPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPT 361
R LLL+S +S + G Y+ L EN + F W+P+ SI F + +SIG GP+
Sbjct: 313 RILLLISGVLMAVSTALMGVYFQLKENDPASMDNFGWLPISSICIFIIFFSIGFGPVPWL 372
Query: 362 LQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLV 421
+ E F + + +AG + + + +F+V ++ ++ G F+I++ +I
Sbjct: 373 VMAELFSEDVKSVAGSIAGTSNWLSAFVVTLLFPILKSSIGPGPTFWIFTAIAVIAFFYS 432
Query: 422 YFIIPESKGKTFAQIQEELNKHIAHKSKLKEQ 453
F +PE+KGKT +IQ+ L+ KS K Q
Sbjct: 433 LFFVPETKGKTIIEIQDLLSGGKGVKSDDKSQ 464
|
|
| FB|FBgn0037387 CG1213 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 150/441 (34%), Positives = 237/441 (53%)
Query: 1 MAGTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVD 60
+ GT++GW SP+ KS D + +TS E +W+ S+I +G LV P G + D
Sbjct: 55 VVGTTLGWTSPIGPKLKSE--DTSDSPLSRPITSDEDAWISSLIAVGALVAPFVAGPMAD 112
Query: 61 YVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAK 120
+GRK LL++ +++++ L + V++LY+ R +QG +G V TV PMY+GEIS
Sbjct: 113 RIGRKWVLLSSSLFFVLAFGLNMVASEVWILYMSRLIQGFGVGFVMTVQPMYVGEISTDN 172
Query: 121 CRGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMK 180
RGA + + GIL Y +GPYV Y L + +V+PVVF + F MPESPYF K
Sbjct: 173 VRGATGSLMQLFIVGGILYVYAIGPYVSYQALQWCCIVVPVVFDLVFYMMPESPYFFAGK 232
Query: 181 GRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLI 240
GR +A KSL +LRG S + ++ E++ I+ +VE M MD+ NRR+L I
Sbjct: 233 GRKSEALKSLQFLRG---QSAEGVHDEMAEIQANVEEAMASKGTVMDLFKNAGNRRALFI 289
Query: 241 VQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTG 300
+ +SG++ VL + S FA L P T+++G + S+ T + DR G
Sbjct: 290 CAGLISFQQLSGINVVLFNSQSIFASANTGL-DPAIATIIIGCVQVGSSALTPLVADRLG 348
Query: 301 RRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVP 360
R+ +LL S I G ++ + + D+S W+P+ ++ + ++Y G GPL
Sbjct: 349 RKVMLLTSSSVMSIGLAALGAFFYM-QLVKGDISSVVWMPVPALIIYNIVYCTGFGPLPW 407
Query: 361 TLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVL 420
+ GE FP+N + +A V T + FLV Y + D G Y F+++++ ++
Sbjct: 408 AVLGEMFPANIKSVASSVVASTCWTLGFLVTFFYPSL-DALGSYYAFWLFAVCMVVAFFF 466
Query: 421 VYFIIPESKGKTFAQIQEELN 441
V F++ E+KG + QIQ+ LN
Sbjct: 467 VLFVVMETKGLSLQQIQDRLN 487
|
|
| FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 152/442 (34%), Positives = 247/442 (55%)
Query: 2 AGTSMGWPSPVLRLFKSNITDMFRNETY-IEMTSAESSWVVSIIELGNLVTPIPIGFLVD 60
AGT +GW SP ++ I D R E Y + + SWV S + LG IPIGFL++
Sbjct: 97 AGTVLGWTSPA----ETEIVD--RGEGYDFPVDKDQFSWVGSAMTLGAACVCIPIGFLIN 150
Query: 61 YVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAK 120
+GRK +L +I+ W ++I+ +V +LY RF+ G+A G APMY GEI+ +
Sbjct: 151 MIGRKWTMLFLVLPFILGWTMLIWAVNVSMLYASRFILGIAGGAFCVTAPMYTGEIAQKE 210
Query: 121 CRGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMK 180
RG L +FF M+ GIL Y VG V L+ + ++P++F F +MPESP +L+ K
Sbjct: 211 IRGTLGSFFQLMITIGILFVYAVGAGVKIFWLSIICGILPLIFGAIFFFMPESPTYLVSK 270
Query: 181 GRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSD-DFMDIISTPANRRSLL 239
R +A KS+ WLRG +E + EL+ +++ +RE K + + ++ P R++L
Sbjct: 271 DRSENAIKSIQWLRG-KEYDYEP---ELAELRE-TDRETKANKVNVWAALNRPVTRKALA 325
Query: 240 IVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRT 299
I + + G++AV+ YAS F I + T+L+GI+ ++TF + +VD+
Sbjct: 326 ISMGLMFFQQVCGINAVIFYASRIFLEANTG-IEAEWATILIGIMQVVATFVSTLVVDKL 384
Query: 300 GRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLV 359
GRR LLL S IS G Y+ L + + W+P+ S+ F +++SIG GP+
Sbjct: 385 GRRILLLASGISMAISTTAIGVYFFLQKQDAAQVVSLGWLPVASLCLFIIMFSIGYGPVP 444
Query: 360 PTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGV 419
+ GE F ++ +G AG + + +++F+V K + + D G+ F++++ G + GV
Sbjct: 445 WLMMGELFATDIKGFAGSLAGTSNWLLAFVVTKTFVNLNDGLGIGGTFWLFA-GLTVVGV 503
Query: 420 L-VYFIIPESKGKTFAQIQEEL 440
+ VYF +PE+KGK+ +IQ+EL
Sbjct: 504 IFVYFAVPETKGKSLNEIQQEL 525
|
|
| UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 146/453 (32%), Positives = 236/453 (52%)
Query: 1 MAGTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVD 60
+ G S + SP L K RN T E+T SWV I+ L L I G L++
Sbjct: 358 VVGFSSAYTSPALVSMKD------RNITSFEVTDQSGSWVGGIMPLAGLAGGILGGPLIE 411
Query: 61 YVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAK 120
Y+GRK +L T +IISWLL+ HV ++ V R + G ++G+ P+Y+GE +
Sbjct: 412 YLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQPE 471
Query: 121 CRGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMK 180
RG L N GILL + G Y+D+ LA++ +P+ FL+ +PE+P + + +
Sbjct: 472 VRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSR 531
Query: 181 GRDVDARKSLFWLRGGRESSKDKINLELSNI---KQDVEREMKLSDDFMDIISTPANRRS 237
GRD ARK+L WLRG K ++ EL I QD ER S +D++ AN +
Sbjct: 532 GRDDRARKALQWLRG----KKADVDPELKGIIKSHQDAERHASQSA-MLDLMKK-ANLKP 585
Query: 238 LLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVD 297
LLI + +SG++AV+ Y F + GS I + CT+++G++ F++TF L+D
Sbjct: 586 LLISLGLMFFQQLSGINAVIFYTVQIF-QDAGSTIDENLCTIIVGVVNFIATFIATMLID 644
Query: 298 RTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGP 357
R GR+ LL +S I+ + G ++ + +N D+S+ W+PL + + + +S+G GP
Sbjct: 645 RLGRKMLLYISDVAMIITLMTLGGFFYV-KNSGQDVSQVGWLPLAAFVIYVLGFSLGFGP 703
Query: 358 LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIIC 417
+ + GE P RG A V T +F+V K + I + G + F+++ C+I
Sbjct: 704 IPWLMMGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIG 763
Query: 418 GVLVYFIIPESKGKTFAQIQEELNKHIAHKSKL 450
V F +PE++GK+ I+ ++ + S +
Sbjct: 764 LAFVIFYVPETQGKSLEDIERKMMGRVRRMSSV 796
|
|
| UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 148/453 (32%), Positives = 233/453 (51%)
Query: 1 MAGTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVD 60
+ G S + SP L K RN T E+T SWV I+ L LV I G L++
Sbjct: 69 VVGFSSAYTSPALVSMKD------RNITSFEVTDQSGSWVGGIMPLAGLVGGILGGPLIE 122
Query: 61 YVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAK 120
Y+GRK +L T +IISWLL+ HV ++ V R + G ++G+ P+Y+GE +
Sbjct: 123 YLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQPE 182
Query: 121 CRGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMK 180
RG L N GILL + G Y+D+ LA++ +PV FL+ +PE+P + + +
Sbjct: 183 VRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPETPRWYVSR 242
Query: 181 GRDVDARKSLFWLRGGRESSKDKINLELSNI---KQDVEREMKLSDDFMDIISTPANRRS 237
GRD ARK+L WLRG K ++ EL I QD ER S +D++ N +
Sbjct: 243 GRDDRARKALQWLRG----KKADVDPELKGIIKSHQDAERHASQSA-MLDLLKK-TNLKP 296
Query: 238 LLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVD 297
LLI + +SG++AV+ Y F + GS I + CT+++G++ F++TF L+D
Sbjct: 297 LLISLGLMFFQQLSGINAVIFYTVQIF-QDAGSTIDENLCTIIVGVVNFIATFIATLLID 355
Query: 298 RTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGP 357
R GR+ LL +S I+ + G ++ + N D+S W+PL S F + +S+G GP
Sbjct: 356 RLGRKMLLYISDIAMIITLMTLGGFFYVKNNGG-DVSHIGWLPLASFVIFVLGFSLGFGP 414
Query: 358 LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIIC 417
+ + GE P RG A V T +F+V K + I G + F+++ C++
Sbjct: 415 IPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVG 474
Query: 418 GVLVYFIIPESKGKTFAQIQEELNKHIAHKSKL 450
V V +PE++GK+ I+ ++ + S +
Sbjct: 475 LVFVIMYVPETQGKSLEDIERKMCGRVRRMSSV 507
|
|
| UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 144/450 (32%), Positives = 235/450 (52%)
Query: 1 MAGTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVD 60
+ G S + SP L K RN T E+T SWV I+ L L I G +++
Sbjct: 345 VVGFSSAYTSPALVSMKD------RNITSFEVTDQSGSWVGGIMPLAGLAGGILGGPMIE 398
Query: 61 YVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAK 120
Y+GRK +L T +IISWLL+ HV ++ V R + GL +GI P+Y+GE +
Sbjct: 399 YLGRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIASLSLPVYLGETVQPE 458
Query: 121 CRGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMK 180
RG L N GILL + G Y+D+ LA++ +P+ FL+ +PE+P + + +
Sbjct: 459 VRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSR 518
Query: 181 GRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLI 240
R+ ARK+L WLRG + + ++ +S QD ER S +D+++ AN + LLI
Sbjct: 519 NREDRARKALQWLRGRKADVEPELK-GISKSHQDAERHAS-SSAMLDLLNK-ANLKPLLI 575
Query: 241 VQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTG 300
+ +SG++AV+ Y F ++ GS I CT+++G++ F++TF L+DR G
Sbjct: 576 SLGLMFFQQLSGINAVIFYTVQIF-QSAGSTIDEKLCTIIVGVVNFIATFIATVLIDRLG 634
Query: 301 RRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVP 360
R+ LL +S I+ + GT++ + N D+S+ W+PL + F V +S+G GP+
Sbjct: 635 RKILLYISDVAMIITLMTLGTFFYMKNNGD-DVSEIGWLPLAAFVVFVVGFSLGFGPIPW 693
Query: 361 TLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVL 420
+ GE P RG A V T +F+V K + I G + F+++ CI+ +
Sbjct: 694 LMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADITASIGNHGAFWMFGSICIVGLLF 753
Query: 421 VYFIIPESKGKTFAQIQEELNKHIAHKSKL 450
V +PE++GK+ I+ ++ + S +
Sbjct: 754 VIVYVPETQGKSLEDIERKMMGRVRRMSSV 783
|
|
| UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 147/456 (32%), Positives = 248/456 (54%)
Query: 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV 62
G S G+ SP + NIT +++T E +WV ++ L LV I G L++Y+
Sbjct: 66 GFSSGYTSPAV--LTMNIT--------LDITKEEITWVGGLMPLAALVGGIVGGPLIEYL 115
Query: 63 GRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCR 122
GRK ++ T + I W+L+ +V +++ R + G+ +GIV P+YIGE + R
Sbjct: 116 GRKKTIMGTAVPFTIGWMLIANAINVVMVFAGRVICGVCVGIVSLAFPVYIGETIQPEVR 175
Query: 123 GALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGR 182
GAL NTGILL + VG Y+D+ LA+ IPV F + I PE+P + + K R
Sbjct: 176 GALGLLPTAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMILTPETPRWYVSKAR 235
Query: 183 DVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQ 242
+ARKSL WLRG + + +K +L+ I Q E + + F + S +R L V
Sbjct: 236 VQEARKSLRWLRG-KNVNIEKEMRDLT-ISQ-TESDRTGGNAFKQLFS----KRYLPAVM 288
Query: 243 I---VAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRT 299
I + + ++G++AV+ YA+S F + GS + + ++++G++ F+STF L+DR
Sbjct: 289 ISLGLMLFQQLTGINAVIFYAASIF-QMSGSSVDENLASIIIGVVNFISTFIATMLIDRL 347
Query: 300 GRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLV 359
GR+ LL +S + L G Y+ L +N+ +D++ + W+PL + + + +SIG GP+
Sbjct: 348 GRKVLLYISSVAMITTLLALGAYFYLKQNH-IDVTAYGWLPLACLVIYVLGFSIGFGPIP 406
Query: 360 PTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGV 419
+ GE PS RG A + T +F+V K +Q I D ++ +++++ CI +
Sbjct: 407 WLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFAVICIGGLL 466
Query: 420 LVYFIIPESKGKTFAQIQEEL---NKHIAHKSKLKE 452
V F +PE+KGK+ +I+ +L ++ + + SK E
Sbjct: 467 FVIFFVPETKGKSLEEIEMKLTSGSRRVRNISKQPE 502
|
|
| UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 132/428 (30%), Positives = 225/428 (52%)
Query: 28 TYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKH 87
T ++T E+SWV I+ L L I G ++Y+GRK +L T +I++WLL+ F
Sbjct: 77 TSFKVTEQEASWVGGIMPLAGLAGGIAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANS 136
Query: 88 VYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV 147
++++ R + G +GI P+Y+GE + RG L N GIL+ + G YV
Sbjct: 137 IWMVLAGRALSGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYV 196
Query: 148 DYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLE 207
++ LA++ ++P+ F++ + +PE+P + + +GR+ ARK+L WLRG K + E
Sbjct: 197 NWSGLAFIGSILPIPFMVLTLLIPETPRWFVTRGREERARKALQWLRG----KKADVEPE 252
Query: 208 LSNI-KQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFAR 266
L I K E E S + + + +N + LLI + +SG++AV+ Y S F +
Sbjct: 253 LKGIVKSHCEAERHASQNAIFDLMKRSNLKPLLIALGLMFFQQLSGINAVIFYTVSIF-K 311
Query: 267 TEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLS 326
GS I + CT+++G++ F +TF L+DR GR+ LL +S I+ L GT++
Sbjct: 312 DAGSTIDENLCTIIVGVVNFGATFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYY- 370
Query: 327 ENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVI 386
+N D+S W+PL S + + +S G+GP+ + GE P RG A V T
Sbjct: 371 KNSGNDVSNIGWLPLASFVIYVIGFSSGVGPIPWLMLGEILPGKIRGSAASVATGFNWTC 430
Query: 387 SFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEELNKHIAH 446
+F+V K + I G + F+ + + C+I V F +PE++GK+ +I+ ++ +
Sbjct: 431 TFIVTKTFADIVAAIGNHGAFWFFGVICLIGLFFVIFFVPETQGKSLEEIERKMMGRVRR 490
Query: 447 KSKLKEQR 454
S + +
Sbjct: 491 MSSVANMK 498
|
|
| UNIPROTKB|Q291H8 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 1.1e-54, P = 1.1e-54
Identities = 133/430 (30%), Positives = 225/430 (52%)
Query: 25 RNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF 84
RN T E+T +SWV I+ L L I G ++Y+GR+ +L T +I+S LL+
Sbjct: 438 RNMTSFEVTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAIPFIVSSLLIAC 497
Query: 85 TKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG 144
+V ++ RF+ G +GI P+Y+GE + RG L N GILL + G
Sbjct: 498 AVNVAMVLAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAG 557
Query: 145 PYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKI 204
Y+D+ LA++ +PV FL+ +PE+P + + +GR+ ARK+L WLRG +E+ +
Sbjct: 558 TYMDWSMLAFLGAALPVPFLILMFLIPETPRWFVSRGREEKARKALSWLRG-KEADVEPE 616
Query: 205 NLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTF 264
L + D +R+ + M+++ N + L I + +SG++AV+ Y S F
Sbjct: 617 LKGLMRSQADADRQAT-QNKMMELLKRN-NLKPLSISLGLMFFQQLSGINAVIFYTVSIF 674
Query: 265 ARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYL 324
+ GS I + CT+++GI+ F++TF L+DR GR+ LL VS I+ + G ++
Sbjct: 675 -KDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFY 733
Query: 325 LSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLT 384
+++ D+S+ W+PL + + +S+G GP+ + GE PS RG A V T
Sbjct: 734 C-KSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNW 792
Query: 385 VISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEELNKHI 444
+F+V K +Q + D G + F+++ C I V +PE++GKT I+ ++ +
Sbjct: 793 SCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKMMGRV 852
Query: 445 AHKSKLKEQR 454
S + +
Sbjct: 853 RRMSSVANMK 862
|
|
| UNIPROTKB|B4GAP7 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila persimilis (taxid:7234)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 1.1e-54, P = 1.1e-54
Identities = 133/430 (30%), Positives = 225/430 (52%)
Query: 25 RNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF 84
RN T E+T +SWV I+ L L I G ++Y+GR+ +L T +I+S LL+
Sbjct: 439 RNMTSFEVTPQAASWVGGIMPLAGLAGGIAGGPFIEYLGRRNTILATAIPFIVSSLLIAC 498
Query: 85 TKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG 144
+V ++ RF+ G +GI P+Y+GE + RG L N GILL + G
Sbjct: 499 AVNVAMVLAGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAG 558
Query: 145 PYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKI 204
Y+D+ LA++ +PV FL+ +PE+P + + +GR+ ARK+L WLRG +E+ +
Sbjct: 559 TYMDWSMLAFLGAALPVPFLILMFLIPETPRWFVSRGREEKARKALSWLRG-KEADVEPE 617
Query: 205 NLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTF 264
L + D +R+ + M+++ N + L I + +SG++AV+ Y S F
Sbjct: 618 LKGLMRSQADADRQAT-QNKMMELLKRN-NLKPLSISLGLMFFQQLSGINAVIFYTVSIF 675
Query: 265 ARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYL 324
+ GS I + CT+++GI+ F++TF L+DR GR+ LL VS I+ + G ++
Sbjct: 676 -KDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFY 734
Query: 325 LSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLT 384
+++ D+S+ W+PL + + +S+G GP+ + GE PS RG A V T
Sbjct: 735 C-KSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNW 793
Query: 385 VISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEELNKHI 444
+F+V K +Q + D G + F+++ C I V +PE++GKT I+ ++ +
Sbjct: 794 SCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDIERKMMGRV 853
Query: 445 AHKSKLKEQR 454
S + +
Sbjct: 854 RRMSSVANMK 863
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P45598 | ARAE_KLEOX | No assigned EC number | 0.2627 | 0.8430 | 0.8538 | yes | N/A |
| P12336 | GTR2_RAT | No assigned EC number | 0.2774 | 0.8995 | 0.8237 | yes | N/A |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.2809 | 0.8389 | 0.8774 | yes | N/A |
| Q9FRL3 | ERDL6_ARATH | No assigned EC number | 0.2898 | 0.8284 | 0.8131 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 478 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-56 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 3e-52 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 1e-25 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 8e-16 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-15 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 6e-11 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-10 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 3e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-08 | |
| pfam01770 | 410 | pfam01770, Folate_carrier, Reduced folate carrier | 3e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-04 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 6e-04 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 4e-56
Identities = 124/458 (27%), Positives = 222/458 (48%), Gaps = 33/458 (7%)
Query: 1 MAGTSMGWPSPVLRLFKSNITDMFRNETYI------EMTSAESSWVVSIIELGNLVTPIP 54
+ G G+ + V+ F + F+ + ++ S +VSI +G L+ +
Sbjct: 7 LGGFLFGYDTGVIGAF-LTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLF 65
Query: 55 IGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK--HVYVLYVVRFMQGLAMGIVFTVAPMY 112
G L D GRK LL L++I LL F K Y+L V R + GL +G + + PMY
Sbjct: 66 AGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMY 125
Query: 113 IGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVDY-------DTLAYVSLVIPVVFLM 165
I EI+ K RGAL + + + GIL+ +G ++ + V ++ L+
Sbjct: 126 ISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLI 185
Query: 166 TFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDF 225
+++PESP +L++KG+ +AR L LRG + ++ E ++++ VE E +
Sbjct: 186 GLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQE-EKDSLERSVEAEKASWLEL 244
Query: 226 MDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILV 285
R+ LL+ ++ + ++G++A+ Y+ + F T G L T+++G++
Sbjct: 245 ---FRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIF-ETLG-LSDSLLVTIIVGVVN 299
Query: 286 FLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISIT 345
F+ TF FLVDR GRRPLLL+ G I L+ G L ++K +++I
Sbjct: 300 FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLG-------VAKSKGAGIVAIV 352
Query: 346 CFAV---IYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG 402
+ +++G GP+ + E FP R A + T + +FL+ ++ +I G
Sbjct: 353 FILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG 412
Query: 403 VYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEEL 440
Y+ F +++ ++ + V+F +PE+KG+T +I E
Sbjct: 413 GYV-FLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 3e-52
Identities = 117/419 (27%), Positives = 197/419 (47%), Gaps = 21/419 (5%)
Query: 33 TSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK---HVY 89
+S+ VVSI +G + + G+L D GRK LL L++I +L+ V
Sbjct: 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVE 128
Query: 90 VLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY--- 146
+L V R + G+ +GI + PMY+ EI+ RGAL++ + + GIL+ Y G
Sbjct: 129 MLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS 188
Query: 147 ----VDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKD 202
+ + + L+ + + ++PESP +L+ KGR +ARKSL LRG S +D
Sbjct: 189 LNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGT--SGED 246
Query: 203 KI---NLELSNIKQDVERE--MKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVL 257
K LEL +IK+ +E+ ST RR L + ++ +G++A++
Sbjct: 247 KELLDELELIDIKRSIEKRSVQPSWGSLFS--STRRIRRRLFLGVVLQWFQQFTGINAIM 304
Query: 258 PYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQL 317
Y+ + F S ++++G + F TF FLVDR GRRPLLL+ G I
Sbjct: 305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF 364
Query: 318 IAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGG 377
+ G T + ++ I F +++G GP+ + E FP + R
Sbjct: 365 VLGILGASFV--TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGIS 422
Query: 378 VTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQI 436
+ + +F+V ++ + + GV F + ++ + VYF +PE+KG+T +I
Sbjct: 423 IAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 97/423 (22%), Positives = 178/423 (42%), Gaps = 64/423 (15%)
Query: 56 GFLVDYVGRKPCLLTTGPLYIISWL------LVIFTK----HVYVLYVV--RFMQGLAMG 103
G+ + GR+ L L+ IS L + YV V R + G+ +G
Sbjct: 76 GYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVG 135
Query: 104 IVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG---------PYVDYDTLAY 154
+ ++PMYI EI+ A RG L +F + G L+ Y V +++ D Y
Sbjct: 136 LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRY 195
Query: 155 V--SLVIP-VVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNI 211
+ S IP ++FLM ++PE+P +L+ +G+ A L + G L I
Sbjct: 196 MFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG-----NTLATQALQEI 250
Query: 212 KQDVEREMKLSDDFMDIISTPANRRSLLIVQI-VAVADVISGMSAVLPYASSTF----AR 266
K ++ K + ++++ + ++V G++ VL YA F A
Sbjct: 251 KHSLDHGRKTGGKLLMFGVG------VIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS 304
Query: 267 TEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGT-YYLL 325
T+ +L+ T+++G++ T VD+ GR+PL ++ G I GT +Y
Sbjct: 305 TDIALLQ----TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ 360
Query: 326 SENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTV 385
+ + L+S+ + +++ GP+ L E FP+ RG A + +
Sbjct: 361 APGI---------VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI 411
Query: 386 ISFLV------MKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEE 439
++ V M + H+ +++IY ++ + ++ +PE+KGKT EE
Sbjct: 412 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL----EE 467
Query: 440 LNK 442
+
Sbjct: 468 MEA 470
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 8e-16
Identities = 92/407 (22%), Positives = 167/407 (41%), Gaps = 39/407 (9%)
Query: 36 ESSWVV----SIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVL 91
E +W V S +G L+ G+L D GRK LL + + +S +L F+ + V
Sbjct: 124 EDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF 183
Query: 92 YVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV-DYD 150
V R + G+ +G ++ A + E K R + T + G++L V ++ D+
Sbjct: 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWR 243
Query: 151 TLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSN 210
L + +F + ++PESP +LI +GR +A K L R + + K K+ E+ +
Sbjct: 244 WLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKIL--QRIAKINGK-KLPAEVLS 300
Query: 211 IK-QDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEG 269
+ + K F+D+ TP R++ L + ++ +A Y G
Sbjct: 301 LSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT------TAFSYYGLVLDLGNLG 354
Query: 270 SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENY 329
I D + G++ + T L+DR GRR + S +G++ L+ ++ + Y
Sbjct: 355 GNIYLDL--FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLL--LLFVPVDLY 410
Query: 330 TVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVIS-- 387
+ ++ +V E +P+ R L GV + V S
Sbjct: 411 FL---------RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII 461
Query: 388 --FLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKT 432
FLV ++L ++ ++ G+L F +PE+KG
Sbjct: 462 SPFLVYLGE------KWLFLPLVLFGGLALLAGILTLF-LPETKGVP 501
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 65/361 (18%), Positives = 114/361 (31%), Gaps = 48/361 (13%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVL 91
++ E +++ LG + G L D GR+ LL L+ + LL++F +++L
Sbjct: 29 ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88
Query: 92 YVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVDYDT 151
V+R +QGL G +F A I + + RG G L +G +
Sbjct: 89 LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148
Query: 152 LAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNI 211
+ +I + + + L SK E
Sbjct: 149 GWRAAFLILAILALLAAVLA------------------ALLLPRPPPESKRPKPAE---- 186
Query: 212 KQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSL 271
E L + ++ + L++ ++ + LP +
Sbjct: 187 ----EAPAPLVPAWKLLLR---DPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLA 239
Query: 272 ITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTV 331
L G+L + L DR GRR LL++ L A LLS
Sbjct: 240 GLL---LGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLI---LAALGLALLS----- 288
Query: 332 DLSKFNWIPLISITCFAVIYSIGLGPLVPTLQG---EFFPSNTRGLAGGVTTITLTVISF 388
+ + ++ G G + P L + P RG A G+ ++
Sbjct: 289 -----LTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA 343
Query: 389 L 389
L
Sbjct: 344 L 344
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 6e-15
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVL 91
++++++ +VS LG + + G+L D GR+ LL L+ + LL+ F +++L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 92 YVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV---- 147
V RF+ GL G ++ A I E K RG F G LL +G +
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
Query: 148 DYDTLAYVSLVIPVVFLMTFIWMP 171
+ L + ++ ++ + +++
Sbjct: 151 GWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 69/362 (19%), Positives = 129/362 (35%), Gaps = 47/362 (12%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVL 91
+ + ++ S +G + G L D +GR+ LL + L+ + LL +V L
Sbjct: 49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQL 108
Query: 92 YVVRFMQGLAMGIVFTVAPMYIGEISGAKCRG-ALSTFFIGM---LNTGILLEYTVGPYV 147
++RF+ GL +G + + E + + RG A+ F G G L + P
Sbjct: 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF 168
Query: 148 DYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIMKGRD-VDARKSLFWLRGGRESSKDKIN 205
+ +L YV + P++ L + ++PES FL+ K + V + + E+
Sbjct: 169 GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSA--- 225
Query: 206 LELSNIKQDVEREMKLSDDFMDIISTPA-NRRSLLI-----VQIVAVADVISGMSAVLPY 259
L Q +R + R ++L+ + +V V + + LP
Sbjct: 226 LPEQKATQGTKR------SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNW----LPK 275
Query: 260 ASSTFARTEGSLITPDECTLLLGILVF---LSTFPTAFLVDRTGRRPLLLVSCFGSGISQ 316
+ + F + + +L DR G R L+ G+ +
Sbjct: 276 LMVELGF------SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAV 329
Query: 317 LIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAG 376
L+ T F+ L+ + A + G + L F+P+ R
Sbjct: 330 LVGSTL-------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGV 376
Query: 377 GV 378
G
Sbjct: 377 GW 378
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-10
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Query: 38 SWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFM 97
+++ LG L+ G L D GRKP LL ++++S + + ++ VL + RF+
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 98 QGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVD-----YDTL 152
QG I +I + RG + G LL +G +
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 153 AYVSLVIPVVFLMTFIWMPES 173
+++++ F++ +PE+
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 64/385 (16%), Positives = 129/385 (33%), Gaps = 48/385 (12%)
Query: 33 TSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLY 92
T+ +++ ++S + + G D GR+ ++T+ L+ L F ++
Sbjct: 45 TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMF 104
Query: 93 VVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLE----YTVGPYVD 148
+ R + G+ MG + + Y+ E R S I G ++ V P
Sbjct: 105 IARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164
Query: 149 --YDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINL 206
+ L ++S++ + L +PE+ + R + L GG + +
Sbjct: 165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMT 224
Query: 207 ELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFAR 266
+ + Q + L+V ++ + +LP T+ +
Sbjct: 225 LAAAMVQSAGKRWPTF--------------VYLVVLVLFANLYSHPIQDLLP----TYLK 266
Query: 267 TEGSLITPDECTLLLGILVFLSTFPTA-------FLVDRTGRRPLLLVSCFGSGISQLIA 319
+ L +P +V S FL D GRR + S + LI
Sbjct: 267 ADLGL-SPHTVA----NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQL--LII 319
Query: 320 GTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVT 379
+ + + + L F F + G+ ++P GE+FP++ R G T
Sbjct: 320 PVFAIGANVAVLGLGLF----------FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFT 369
Query: 380 TITLTVISFLVMKMYQVICDHYGVY 404
+ L + ++ Y
Sbjct: 370 YQLGNLGGALAPIIGALLAQRLDEY 394
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 5/145 (3%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTG-PLYIISWLLVIFTKHVYV 90
+++AE+ ++S+ LG ++ + G L D +GR+ LL G L + LL+ + +
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 91 LYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV--- 147
L V + G +G F E++ + RG S F + G L + +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327
Query: 148 -DYDTLAYVSLVIPVVFLMTFIWMP 171
Y + + + ++ + + +P
Sbjct: 328 GGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|145103 pfam01770, Folate_carrier, Reduced folate carrier | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 48 NLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMG---- 103
L +P+ L DY+ KP ++ G I++WLL++FT V + V+ F G+A
Sbjct: 54 YLALLVPVFLLTDYLRYKPVIILQGLAGIVTWLLLLFTTSVIAMQVMEFFYGVATAAEVA 113
Query: 104 ----IVFTVAPMYIGEISGAKCRGA-LSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLV 158
I V P ++ R A L F+ + +L+ V Y TL Y+SL
Sbjct: 114 YYSYIYSKVDPERYQRVTS-YTRAATLVGKFLSGVLGQLLVSLGR---VSYFTLNYISLA 169
Query: 159 IPVV--FLMTFIWMPE-SPYF 176
VV FL F+ P+ S +F
Sbjct: 170 SQVVALFLSLFLPRPKRSLFF 190
|
The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy, such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules. Length = 410 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 19/150 (12%)
Query: 280 LLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWI 339
+ L + +L DR GRR +LL+ + L+ + + +
Sbjct: 42 AFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA----FASSLWL-------- 89
Query: 340 PLISITCFAVIYSIGLG---PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQV 396
+ + +G G P L E+FP RG A G+ + + + L + +
Sbjct: 90 ----LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL 145
Query: 397 ICDHYGVYLNFYIYSLGCIICGVLVYFIIP 426
+ + G F I ++ ++ +L+ F++
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLR 175
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 34/179 (18%), Positives = 56/179 (31%), Gaps = 15/179 (8%)
Query: 249 VISGMSAVLPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRP-LLL 306
+ G +L Y G S L G+ L L DR GRR LLL
Sbjct: 187 LSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLL 246
Query: 307 VSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEF 366
+ + + L+ + L+ P + TL E
Sbjct: 247 IGLLLAALGLLLLALA-------------PSLALLLVALLLLGFGLGFAFPALLTLASEL 293
Query: 367 FPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFII 425
P RG A G+ ++ L + ++ D G F I + ++ +L+ +
Sbjct: 294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 26/207 (12%)
Query: 238 LLIVQIVAVADVISGMSAVLPYASSTF--ARTEGSLITPDECTLLLGILVFLSTFPTAFL 295
L + +A A+ Y + + TE L+ + L+ L
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLL-----TAFSLGYALAQPLAGRL 55
Query: 296 VDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355
DR GRR +LL+ + L+ + + L+ + V+ +G
Sbjct: 56 SDRFGRRRVLLIGLLLFALGLLLLLF--------------ASSLWLLLV--LRVLQGLGG 99
Query: 356 GPLVPTLQ---GEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSL 412
G L P ++FP RG A G+ + + + L + ++ +G F I ++
Sbjct: 100 GALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAI 159
Query: 413 GCIICGVLVYFIIPESKGKTFAQIQEE 439
++ VL ++P ++ E
Sbjct: 160 LALLAAVLAALLLPRPPPESKRPKPAE 186
|
Length = 346 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 13/150 (8%)
Query: 279 LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNW 338
+ + + + L DR GR+P+LLV F +S + LS N TV
Sbjct: 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA----LSSNITV------- 53
Query: 339 IPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVIC 398
+I+ + L L + +P RG+A G+ + + + L + V+
Sbjct: 54 -LIIARFLQGFGAAFAL-VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111
Query: 399 DHYGVYLNFYIYSLGCIICGVLVYFIIPES 428
G F ++ + +L+ F++PE+
Sbjct: 112 QFLGWRAPFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.004
Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 17/177 (9%)
Query: 27 ETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK 86
E + + + + I+ LG +V G L D +GRK CLL + F +
Sbjct: 194 EKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ 253
Query: 87 HVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGA----LSTFF-IGMLNTGILL-- 139
R + G +G + Y E + RG L F+ IG + +
Sbjct: 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA 313
Query: 140 -------EYTVGPYVDYDTLAYVSLV--IPVVF-LMTFIWMPESPYFLIMKGRDVDA 186
+ +G + + +V P VF + +MPESP F + G+ +A
Sbjct: 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEA 370
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| KOG0254|consensus | 513 | 100.0 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| KOG0255|consensus | 521 | 100.0 | ||
| KOG0252|consensus | 538 | 100.0 | ||
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.98 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.98 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.96 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.96 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.95 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.95 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.95 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.95 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.94 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.94 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.94 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.94 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.94 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.94 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.94 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.94 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.94 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.93 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.93 | |
| KOG2532|consensus | 466 | 99.93 | ||
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.93 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.93 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.92 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.92 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.92 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.92 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.92 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.92 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.92 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.91 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.91 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.91 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.9 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.9 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.9 | |
| KOG1330|consensus | 493 | 99.9 | ||
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.89 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.88 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.88 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.88 | |
| KOG2533|consensus | 495 | 99.88 | ||
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.86 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.86 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.86 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.85 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.85 | |
| KOG2615|consensus | 451 | 99.84 | ||
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.83 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.83 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.82 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.82 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.81 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.81 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.79 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.77 | |
| KOG3764|consensus | 464 | 99.76 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.75 | |
| KOG2504|consensus | 509 | 99.75 | ||
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.68 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.67 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.66 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.65 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.65 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.65 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.64 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.62 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.61 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.57 | |
| KOG4686|consensus | 459 | 99.57 | ||
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.56 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.48 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.47 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.44 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.43 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.4 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.36 | |
| KOG2563|consensus | 480 | 99.32 | ||
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.25 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.24 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.19 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.19 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.17 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.16 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.15 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.15 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.14 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.13 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.12 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.11 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.1 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.1 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.1 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.1 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.1 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.09 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.09 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.08 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.08 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.07 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.05 | |
| KOG2325|consensus | 488 | 99.05 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.05 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.04 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.04 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.03 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.03 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.02 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.02 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.01 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.99 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.99 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.99 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.99 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.99 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.98 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.98 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.97 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.96 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.94 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.93 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.93 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.93 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.92 | |
| KOG2615|consensus | 451 | 98.91 | ||
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.9 | |
| KOG3626|consensus | 735 | 98.9 | ||
| KOG0569|consensus | 485 | 98.9 | ||
| PRK12382 | 392 | putative transporter; Provisional | 98.89 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.89 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.89 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.88 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.88 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.87 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.86 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.86 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.85 | |
| KOG1330|consensus | 493 | 98.85 | ||
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.85 | |
| KOG2816|consensus | 463 | 98.84 | ||
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.82 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.8 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.8 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.79 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.79 | |
| KOG3098|consensus | 461 | 98.79 | ||
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.78 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.76 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.76 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.76 | |
| KOG0255|consensus | 521 | 98.71 | ||
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.71 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.68 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.68 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.67 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.66 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.65 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.62 | |
| KOG2532|consensus | 466 | 98.62 | ||
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.6 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.59 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.58 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.57 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.55 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.55 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.55 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.53 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.52 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.52 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.52 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.51 | |
| KOG0254|consensus | 513 | 98.5 | ||
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.49 | |
| KOG0252|consensus | 538 | 98.45 | ||
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.41 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.41 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.33 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.32 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.31 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.3 | |
| KOG0637|consensus | 498 | 98.26 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.22 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.22 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.2 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.16 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.15 | |
| KOG3764|consensus | 464 | 98.13 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.11 | |
| KOG2533|consensus | 495 | 98.11 | ||
| KOG2504|consensus | 509 | 98.1 | ||
| KOG0253|consensus | 528 | 98.1 | ||
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.09 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.06 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.04 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.03 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.0 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.97 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.76 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.72 | |
| KOG2816|consensus | 463 | 97.7 | ||
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.57 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.57 | |
| KOG3810|consensus | 433 | 97.56 | ||
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.47 | |
| KOG3762|consensus | 618 | 97.46 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.39 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.39 | |
| KOG4332|consensus | 454 | 97.36 | ||
| KOG4686|consensus | 459 | 97.35 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.27 | |
| KOG2325|consensus | 488 | 97.17 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.16 | |
| KOG2563|consensus | 480 | 97.0 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.98 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.8 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.72 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.68 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.63 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.6 | |
| KOG3762|consensus | 618 | 96.18 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.1 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 95.85 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 95.39 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 94.75 | |
| KOG3626|consensus | 735 | 94.24 | ||
| KOG3098|consensus | 461 | 94.17 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.82 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 93.7 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 93.65 | |
| KOG3574|consensus | 510 | 93.47 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 92.97 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 92.57 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 92.38 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 92.25 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 91.13 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 90.86 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 90.0 | |
| KOG1237|consensus | 571 | 89.09 | ||
| KOG1479|consensus | 406 | 88.64 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 88.63 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 88.17 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 87.52 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 84.94 | |
| KOG3574|consensus | 510 | 84.25 | ||
| KOG1479|consensus | 406 | 83.61 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 82.5 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 80.96 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 80.44 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-56 Score=429.23 Aligned_cols=435 Identities=30% Similarity=0.454 Sum_probs=363.0
Q ss_pred ccceeecchhhhhhhcccccccCCCcccccCcchh----hHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHH
Q psy13206 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAES----SWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIIS 78 (478)
Q Consensus 3 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~ 78 (478)
|+..+..|.....+.+..++++.++.+.++++.+. +.++|++++|.++|+++.|+++||+|||.+++++.++..++
T Consensus 24 Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~ 103 (485)
T KOG0569|consen 24 GYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLA 103 (485)
T ss_pred hhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34444444444555555555666666666666543 77889999999999999999999999999999999999988
Q ss_pred HHHHHHh---hhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC------Cccch
Q psy13206 79 WLLVIFT---KHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG------PYVDY 149 (478)
Q Consensus 79 ~~~~~~a---~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g------~~~~~ 149 (478)
+++..++ +++++++++|++.|+..|......+.|+.|.+|.+.||..+++.+.+..+|.+++..+| ....|
T Consensus 104 ~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W 183 (485)
T KOG0569|consen 104 ALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLW 183 (485)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcch
Confidence 8887665 68999999999999999999999999999999999999999999999999999997665 33457
Q ss_pred hhHHHHHHHHHHHHHHhhccccCChHHHHH-cCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHh
Q psy13206 150 DTLAYVSLVIPVVFLMTFIWMPESPYFLIM-KGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDI 228 (478)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~pESp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (478)
+.+.....++.++.++...++|||||||.. |||.+||+++++++|+..+++.+ .+++.++ .+..+.+++.+.+++++
T Consensus 184 ~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~-~e~~~~e-~~~~~~~~~~~~sl~~~ 261 (485)
T KOG0569|consen 184 PYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAE-IEEMLRE-IEEEELEKKKQISLRQL 261 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhH-HHHHHHH-HHHhccccccCCcHHHH
Confidence 777777777778888889999999999987 89999999999999986543221 1111111 11112222345678999
Q ss_pred hcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHh
Q psy13206 229 ISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVS 308 (478)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~ 308 (478)
++++..|+.+.+...+.++++++|.+++..|...++.+.+.....+...+...+.+.++.++++.+++||.|||++++.+
T Consensus 262 ~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~ 341 (485)
T KOG0569|consen 262 LKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLIS 341 (485)
T ss_pred hcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999999999999999999999999999888767778888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHH
Q psy13206 309 CFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISF 388 (478)
Q Consensus 309 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~ 388 (478)
..++.++.+.+.+.....+... ....+..+...+.|...|+.|.||+.|.+.+|++|++.|..+.+++....|+..+
T Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~---~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~f 418 (485)
T KOG0569|consen 342 LSLMAVALLLMSIALFLSNSFG---SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNF 418 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHH
Confidence 9999998888877665443211 1122344566778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCCCCHHHHHHHHhhh
Q psy13206 389 LVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEELNKH 443 (478)
Q Consensus 389 i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~~~~~~~~~~~~ 443 (478)
+....++++.+.+|. ..|+++.+++++.+++.|+++||||||+..|+.++++++
T Consensus 419 iv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 419 IVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 999999999999998 578889999999999999999999999999998876554
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=389.21 Aligned_cols=404 Identities=28% Similarity=0.487 Sum_probs=338.3
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy13206 35 AESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIG 114 (478)
Q Consensus 35 ~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 114 (478)
.+.+|+++++.+|.++|+++.|+++|++|||++++++.+++.++++++++++|+++++++|+++|+|.|+...+.++|++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 56699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchhhhHHHHHHHHHhHHHHhhcCCcc-----chhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHHHHHHH
Q psy13206 115 EISGAKCRGALSTFFIGMLNTGILLEYTVGPYV-----DYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKS 189 (478)
Q Consensus 115 E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~ 189 (478)
|++|++.||...+..+.....|.++++.++... +||..+.+..+++++..+..+++||||||+.++||.+||+++
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~ 248 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRS 248 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHH
Confidence 999999999999999999999999998888765 699888888888777777788899999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHHHHHHH-H-HHhhc-cchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHh
Q psy13206 190 LFWLRGGRESSKDKINLELSNIKQD-V-EREMK-LSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFAR 266 (478)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (478)
+.++++.++.+ ...+.++.+.. . +.... .+..+.+++. +..++++.+...+..+++++|++.+..|.+.++..
T Consensus 249 l~~l~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~ 324 (513)
T KOG0254|consen 249 LKRLRGLSPED---VEVELELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS 324 (513)
T ss_pred HHHHhCCCCcc---hHHHHHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh
Confidence 99998843222 22233222211 1 11111 1223455555 67888889889999999999999999999999888
Q ss_pred cCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHH
Q psy13206 267 TEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITC 346 (478)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (478)
.+..... .....+.++..+++++++.+++||+|||++++.+...+.+++++++.................+.++.....
T Consensus 325 ~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (513)
T KOG0254|consen 325 AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCL 403 (513)
T ss_pred cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHH
Confidence 7764222 677788899999999999999999999999999999999999988877654432211223446677778888
Q ss_pred HHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-Hhheee
Q psy13206 347 FAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGV-LVYFII 425 (478)
Q Consensus 347 ~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~-~~~~~~ 425 (478)
+...++.+.+|+.|.+.+|++|.+.|+++.+++...+++.+++....++.+....+....|.+++..+.+..+ .+++++
T Consensus 404 ~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~ 483 (513)
T KOG0254|consen 404 FIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFV 483 (513)
T ss_pred HHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEc
Confidence 8999999999999999999999999999999999999999999988888887776534567777777777777 788999
Q ss_pred cCCCCCCHHHHHHHHhhh
Q psy13206 426 PESKGKTFAQIQEELNKH 443 (478)
Q Consensus 426 pEt~~~~~~~~~~~~~~~ 443 (478)
||||+++++|+++.+.+.
T Consensus 484 pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 484 PETKGLTLEEINELFEEG 501 (513)
T ss_pred ccCCCCcHHHHHHHHHcC
Confidence 999999999998876554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-51 Score=408.87 Aligned_cols=428 Identities=31% Similarity=0.525 Sum_probs=322.5
Q ss_pred cccceeecchhhhhhhcccc--ccc---CCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHH
Q psy13206 2 AGTSMGWPSPVLRLFKSNIT--DMF---RNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYI 76 (478)
Q Consensus 2 ~g~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~ 76 (478)
+|+..|||......+..... ..+ +++.+.+.++.+.+++.++.++|.++|++++|+++||+|||++++++.++..
T Consensus 8 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~ 87 (451)
T PF00083_consen 8 GGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMI 87 (451)
T ss_pred HHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence 45667777766655532211 011 1111112245568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh---hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cc-
Q psy13206 77 ISWLLVIFTK---HVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VD- 148 (478)
Q Consensus 77 i~~~~~~~a~---~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~- 148 (478)
++++++++++ |++.++++|+++|++.|+..++.++|+.|..|+++||+..++.+..+.+|.+++..++.. .+
T Consensus 88 i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 167 (451)
T PF00083_consen 88 IGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDN 167 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999 999999999999999999999999999999999999999999999999998888776543 23
Q ss_pred --hhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHH
Q psy13206 149 --YDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFM 226 (478)
Q Consensus 149 --~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (478)
||....+..++.++.++...++||||||+..|||.|||+++++++++.+.++ ++.++..+..++.++.+.++.
T Consensus 168 ~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 242 (451)
T PF00083_consen 168 WGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIED-----EEIEEIKAEKKESQESKASWR 242 (451)
T ss_pred ccccccccccccccccccccccccccccceeccccccccccccccccccccccc-----ccccccccccccccccceeee
Confidence 8888777777777777777889999999999999999999999876542221 111111111111111124566
Q ss_pred HhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHH
Q psy13206 227 DIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLL 306 (478)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~ 306 (478)
++++.+++++++.........+.+.+......|.+.++.+.+.+.. .....+.++..+++.+++.+++||+|||++++
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i 320 (451)
T PF00083_consen 243 DLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLI 320 (451)
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 7777766677777766666666677766666666666655444322 34455666777788888889999999999999
Q ss_pred HhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHH
Q psy13206 307 VSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVI 386 (478)
Q Consensus 307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg 386 (478)
.+.++++++.+.++.......+.. ....+..+.....+...++.+.++..+.+++|+||++.|+++.+++...++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~ 397 (451)
T PF00083_consen 321 IGLLLMAICSLILGIIFFLGVSSS---SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIG 397 (451)
T ss_pred cccccccccccccccccccccccc---cccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence 988888877766541111111000 01122223333445566777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCCCCHHHHHHH
Q psy13206 387 SFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEE 439 (478)
Q Consensus 387 ~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~~~~~~~~ 439 (478)
+++.+.+++.+.+..+....+.++++.+++..++.++++||||+++++|++++
T Consensus 398 ~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 398 GFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 99999999988887775567788888888888889999999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=358.99 Aligned_cols=392 Identities=19% Similarity=0.175 Sum_probs=272.0
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKH------VYVLYVVRFMQGLAMG 103 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~------~~~l~~~R~l~G~~~g 103 (478)
.++++.+.+++.+.+.+|+++|++++|+++||+|||+++.++.+++.+++++++++++ ++.++++|+++|++.|
T Consensus 51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence 4567778899999999999999999999999999999999999999999999999876 7899999999999999
Q ss_pred hhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC---------------------------ccchhhHHHHH
Q psy13206 104 IVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP---------------------------YVDYDTLAYVS 156 (478)
Q Consensus 104 ~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~---------------------------~~~~~~~~~~~ 156 (478)
+.++..++|++|++|+++||+..++.+....+|.++++.++. ..+||..+.+.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~ 210 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG 210 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence 999999999999999999999999999888888766655431 12699888777
Q ss_pred HHHHHHHHHhhccccCChHHHHHcCCHH-HHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchh
Q psy13206 157 LVIPVVFLMTFIWMPESPYFLIMKGRDV-DARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANR 235 (478)
Q Consensus 157 ~~~~~~~~~~~~~~pESp~~l~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (478)
.+++++.++...++||||||+..|+|.+ ++.+.+.++++.+.+++ .++.++.++ +++..+.+++++++.+..+
T Consensus 211 ~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 284 (502)
T TIGR00887 211 AVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAE---PDEVEKAST---AVEVPKASWSDFFTHFFKW 284 (502)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccC---cccccchhc---cccchhhhHHHHHHHHhhh
Confidence 7777777777788999999999998875 57777777654322111 011111110 0111123466666532222
Q ss_pred ---HHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchh------------hHHHHHHHHHHHhhhhhHhhhhcC
Q psy13206 236 ---RSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDE------------CTLLLGILVFLSTFPTAFLVDRTG 300 (478)
Q Consensus 236 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~Dr~G 300 (478)
+.++......+.+. ..++....|.|.++.+.+.+...... ...+..++.+++.++.++++||+|
T Consensus 285 ~~~~~~~~~~~~~~~~~-~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~g 363 (502)
T TIGR00887 285 RHGKHLLGTAGSWFLLD-IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIG 363 (502)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 22222222222221 12223334455555544432111100 122233455667788899999999
Q ss_pred CchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHH
Q psy13206 301 RRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTT 380 (478)
Q Consensus 301 Rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~ 380 (478)
||+.++.+.+++++++++++...... . .. ........+..+++.+.++..+.+++|++|++.|+++.|+.+
T Consensus 364 RR~~l~~~~~~~~~~~~~l~~~~~~~---~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~ 434 (502)
T TIGR00887 364 RKPIQLMGFFILTVLFFVLGFAYNHL---S----TH--GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISA 434 (502)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhc---c----hh--HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHH
Confidence 99998888777776665554322100 0 00 111122222334456677788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----------ccchHHHHHHHHHHHHHHHhheeecCCCCCCHHHHHH
Q psy13206 381 ITLTVISFLVMKMYQVICDHY----------GVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQE 438 (478)
Q Consensus 381 ~~~~lg~~i~~~~~~~l~~~~----------g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~~~~~~~ 438 (478)
..+++++++++.+++.+.+.. +....++++++.+++.++. ++++|||++++++|+++
T Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 435 ASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred HHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence 999999999999999987743 2234567777666665554 57889999999987654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=341.06 Aligned_cols=421 Identities=21% Similarity=0.370 Sum_probs=293.4
Q ss_pred cceeecchhhhhhhcccccccCC--CcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHH
Q psy13206 4 TSMGWPSPVLRLFKSNITDMFRN--ETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLL 81 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~ 81 (478)
+..|+|..........+.+.+.+ ..+++.++.+.+++.+++++|.++|++++|+++||+|||++++++.+++.+++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~ 101 (479)
T PRK10077 22 LLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALG 101 (479)
T ss_pred HhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34445444443333223333322 2245788899999999999999999999999999999999999999999999998
Q ss_pred HHHh------------hhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----
Q psy13206 82 VIFT------------KHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP---- 145 (478)
Q Consensus 82 ~~~a------------~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~---- 145 (478)
++++ ++++.++++|+++|++.|+.++...++++|++|+++||++.++.+....+|.++++.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~ 181 (479)
T PRK10077 102 SAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIAR 181 (479)
T ss_pred HHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8874 235788999999999999999999999999999999999999999988888877655431
Q ss_pred --------ccchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHH
Q psy13206 146 --------YVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVER 217 (478)
Q Consensus 146 --------~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (478)
..+||+.+++...+.++..+...++||||+|+..+++.+++++.+++.++..+ .....++.++..++
T Consensus 182 ~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 256 (479)
T PRK10077 182 SGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-----ATQALQEIKHSLDH 256 (479)
T ss_pred cCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-----HHHHHHHHHHHHHH
Confidence 34799988877666666666667799999999999999998887776643221 11111221111111
Q ss_pred hhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhh
Q psy13206 218 EMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVD 297 (478)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~D 297 (478)
+.... ...+. ...............++..+++....|.+.+....+.+...........++..+++.++.++++|
T Consensus 257 ~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~d 331 (479)
T PRK10077 257 GRKTG---GKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD 331 (479)
T ss_pred hhhhh---hhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 11111 01111122222223333444445555666665554443233444455567788889999999999
Q ss_pred hcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhH
Q psy13206 298 RTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGG 377 (478)
Q Consensus 298 r~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g 377 (478)
|+|||++++.+.++++++.+.+..... .+ .........+..+...++.+.+|..+.+++|++|++.|+++.|
T Consensus 332 r~g~r~~~i~~~~~~~v~~~~l~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 403 (479)
T PRK10077 332 KFGRKPLQIIGALGMAIGMFSLGTAFY-TQ-------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALA 403 (479)
T ss_pred HhcChHHHHHhHHHHHHHHHHHHHHHh-cC-------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHH
Confidence 999999998888887777665543221 00 0112222334444555555566788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HhcccchHHHHHHHHHHHHHHHhheeecCCCCCCHHHHHHHHhh
Q psy13206 378 VTTITLTVISFLVMKMYQVIC------DHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEELNK 442 (478)
Q Consensus 378 ~~~~~~~lg~~i~~~~~~~l~------~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~~~~~~~~~~~ 442 (478)
+++..+++++.+++.+++.+. +..++...++++++.+++..++.+++.||||+++++|+++.+++
T Consensus 404 ~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 474 (479)
T PRK10077 404 IAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474 (479)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence 999999999999988887554 45666667777787777777777788999999998887666543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=350.20 Aligned_cols=388 Identities=18% Similarity=0.213 Sum_probs=279.3
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++++..+.+++.+++++|.++|++++|+++||+|||++++++.+++++++++++++++++.++++|+++|++.|+..++
T Consensus 196 ~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~ 275 (742)
T TIGR01299 196 DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPI 275 (742)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC-----------------ccchhhHHHHHHHHHHHHHHhhcccc
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP-----------------YVDYDTLAYVSLVIPVVFLMTFIWMP 171 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~p 171 (478)
..+++.|++|+++||+..++.+.++.+|.++++.++. ..+||+.+++..++.++.++.+.++|
T Consensus 276 ~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lP 355 (742)
T TIGR01299 276 VFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMP 355 (742)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999988888888777654321 13588887777766666677778899
Q ss_pred CChHHHHHcCCHHHHHHHHHHHhCCCCCch--hhHHHHHHHHHHHH------H--Hhhc------------c----chhH
Q psy13206 172 ESPYFLIMKGRDVDARKSLFWLRGGRESSK--DKINLELSNIKQDV------E--REMK------------L----SDDF 225 (478)
Q Consensus 172 ESp~~l~~~~~~~~a~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~------~--~~~~------------~----~~~~ 225 (478)
|||+|+..+||.+||.++++++++.+.... .......++.+... + ++.. . -.++
T Consensus 356 ESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (742)
T TIGR01299 356 ESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNF 435 (742)
T ss_pred CCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHH
Confidence 999999999999999999999976542210 00000011100000 0 0000 0 0135
Q ss_pred HHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhc---C------------------------------CC--
Q psy13206 226 MDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFART---E------------------------------GS-- 270 (478)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------------------------~~-- 270 (478)
+++|+ +.++++++....++++..+ +++.+..|.|.++... + ..
T Consensus 436 ~~lf~-~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (742)
T TIGR01299 436 LRCFN-PEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDN 513 (742)
T ss_pred HHHcC-ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhcccccccc
Confidence 55665 4567776666666665544 4555666766553220 0 00
Q ss_pred ----------------------------------------------------------------------CCC-------
Q psy13206 271 ----------------------------------------------------------------------LIT------- 273 (478)
Q Consensus 271 ----------------------------------------------------------------------~~~------- 273 (478)
..+
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 593 (742)
T TIGR01299 514 DKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEG 593 (742)
T ss_pred chhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchh
Confidence 000
Q ss_pred ---chhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHH
Q psy13206 274 ---PDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVI 350 (478)
Q Consensus 274 ---~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (478)
......+.+++.+++.+++++++||+|||++++.+.++.++++++++... . ....++..+++. +
T Consensus 594 ~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~---s---------~~~ll~~~~l~g-~ 660 (742)
T TIGR01299 594 AYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN---S---------ESAMIALLCLFG-G 660 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc---c---------HHHHHHHHHHHH-H
Confidence 01123445677789999999999999999999988888887766544211 0 011111122222 2
Q ss_pred HHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCC
Q psy13206 351 YSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKG 430 (478)
Q Consensus 351 ~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~ 430 (478)
+..+..+..+.+++|++|++.|++++|+.+..+++|++++|.+.+.+.+.. ...++++.++..++++++. .++|||++
T Consensus 661 ~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll~~ll~-~~LPET~~ 738 (742)
T TIGR01299 661 LSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALACGGLLA-LKLPDTRG 738 (742)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHH-HhCCCCcc
Confidence 223345567789999999999999999999999999999999998877653 3456766666655555554 46699998
Q ss_pred CCH
Q psy13206 431 KTF 433 (478)
Q Consensus 431 ~~~ 433 (478)
+.+
T Consensus 739 ~~l 741 (742)
T TIGR01299 739 QVL 741 (742)
T ss_pred ccc
Confidence 754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=300.55 Aligned_cols=386 Identities=17% Similarity=0.200 Sum_probs=286.7
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
.++++.-|..++++..+.|..+|+..+|.++|++|||+.+.++.+...+...+.++++|+..++++|.+.|+|.|+ +|.
T Consensus 107 ~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv 185 (528)
T KOG0253|consen 107 VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPV 185 (528)
T ss_pred hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccH
Confidence 5668888999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDV 184 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~ 184 (478)
..++-.|..|..+|+..+-.. ..+..|.+....+. +..+||+..+....+..++.....|+||||||++.+|+.+
T Consensus 186 ~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~ 264 (528)
T KOG0253|consen 186 DSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDY 264 (528)
T ss_pred hHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChH
Confidence 999999999999999766555 67777766555544 4568998877777666677778899999999999999999
Q ss_pred HHHHHHHHHhCCCCCc------hhhHHHHHHHHHH-----HHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhh
Q psy13206 185 DARKSLFWLRGGRESS------KDKINLELSNIKQ-----DVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGM 253 (478)
Q Consensus 185 ~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (478)
+|.+.++++.+.+... ......+.++.+. ..+..+....+..+++. |+.|++.+....+++...++.+
T Consensus 265 kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyy 343 (528)
T KOG0253|consen 265 KALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYY 343 (528)
T ss_pred HHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999987543211 0001111111111 11122233445556664 6677777766666666666555
Q ss_pred hHHHHhHHHHHHhcC--------------------CCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHH
Q psy13206 254 SAVLPYASSTFARTE--------------------GSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSG 313 (478)
Q Consensus 254 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~ 313 (478)
..++. ....++... ......+.-.++..+..++|.++.++++||+|||+.+..+.+.++
T Consensus 344 g~VLl-ttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~ 422 (528)
T KOG0253|consen 344 GSVLL-TTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFG 422 (528)
T ss_pred HHHHH-HHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHH
Confidence 44432 222222111 000011122456788899999999999999999999999999888
Q ss_pred HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHH
Q psy13206 314 ISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKM 393 (478)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~ 393 (478)
++++.+.... .. + ...+.++...+ |..+.-...|+|++|++|+..|+++.|.++..+++|+.+.|.+
T Consensus 423 iflfll~~c~--~r--------n--~~tvllf~ara-fisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~i 489 (528)
T KOG0253|consen 423 IFLFLLTTCK--TR--------N--AYTVLLFTARA-FISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVI 489 (528)
T ss_pred HHHHHHHHhc--Cc--------c--hhHHHHHHHHH-HHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHH
Confidence 8877654331 11 1 11122233333 3334445688999999999999999999999999999999988
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCCCCH
Q psy13206 394 YQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTF 433 (478)
Q Consensus 394 ~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~~ 433 (478)
. +......+.+..+++..+++.++.++++.-|||||.+
T Consensus 490 A--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 490 A--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred H--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 7 4444445678889999999999999898899999864
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=323.23 Aligned_cols=383 Identities=21% Similarity=0.279 Sum_probs=272.8
Q ss_pred ccccC---cchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhh
Q psy13206 29 YIEMT---SAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIV 105 (478)
Q Consensus 29 ~~~~~---~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~ 105 (478)
+++++ +.+.+++.+++++|.++|++++|+++||+|||++++++.++..++++++++++|++.++++|++.|++.|+.
T Consensus 118 e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~ 197 (505)
T TIGR00898 118 EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGI 197 (505)
T ss_pred EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccch
Confidence 56666 778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc-cchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHH
Q psy13206 106 FTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY-VDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDV 184 (478)
Q Consensus 106 ~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~ 184 (478)
.+...+++.|+.|+++|++..+..+.+..+|.++++.++.. .+||+.+++..++.++..+..+++||||+|+..++|.+
T Consensus 198 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~ 277 (505)
T TIGR00898 198 WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIE 277 (505)
T ss_pred HHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHH
Confidence 99999999999999999999999988899998887777654 35888888777666666666678999999999999999
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHH
Q psy13206 185 DARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTF 264 (478)
Q Consensus 185 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (478)
|+.+.+++..+.+.........+.+ .++. +++++.+.+++++++++..++.++.....++... +..|.....
T Consensus 278 ~a~~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 349 (505)
T TIGR00898 278 EALKILQRIAKINGKKLPAEVLSLS-LEKD-LSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTA------FSYYGLVLD 349 (505)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHhhh-hhhh-hhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHH------HHHHHHhcc
Confidence 9999988876533221111000100 0010 1111123467778877666655444333222211 111111111
Q ss_pred HhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHH
Q psy13206 265 ARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISI 344 (478)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (478)
..... .+......+.++..+++.++.++++||+|||+.+..+.++.+++.+++... .. ...+......
T Consensus 350 ~~~~~--~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~---~~-------~~~~~~~~~~ 417 (505)
T TIGR00898 350 LGNLG--GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV---PV-------DLYFLRTALA 417 (505)
T ss_pred ccccC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc---CC-------CchHHHHHHH
Confidence 11111 223444556677888899999999999999999988887777765544321 10 0011111111
Q ss_pred HHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhee
Q psy13206 345 TCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFI 424 (478)
Q Consensus 345 ~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 424 (478)
.+ ..+...+..+..+.+.+|++|++.|+++.|+.+..+++|+.++|.+.+ +. ..+.+.++.++++..++.++.. ++
T Consensus 418 ~~-~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~-~~ 493 (505)
T TIGR00898 418 VL-GKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILT-LF 493 (505)
T ss_pred HH-HHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHH-Hc
Confidence 11 111122233456788999999999999999999999999999999988 43 3345567777776666665554 57
Q ss_pred ecCCCCCCHHH
Q psy13206 425 IPESKGKTFAQ 435 (478)
Q Consensus 425 ~pEt~~~~~~~ 435 (478)
+|||++++++|
T Consensus 494 lpet~~~~l~~ 504 (505)
T TIGR00898 494 LPETKGVPLPE 504 (505)
T ss_pred CcCCCCCCCCC
Confidence 89999987653
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=301.50 Aligned_cols=400 Identities=28% Similarity=0.438 Sum_probs=281.1
Q ss_pred cCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh---hHHHHHHHHHHHhhhhhhhhhh
Q psy13206 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK---HVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 32 ~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~---~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
.+..+.+++.+++.++..+++++.|+++||+|||+++.++.+++.+++++++++. +++.++++|+++|++.|...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 147 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASAL 147 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhH
Confidence 5688999999999999999999999999999999999999999999999986654 4568999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC-------CccchhhHHHHHHHHHHHHHHhhccccCChHHHHHcC
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG-------PYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKG 181 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~ 181 (478)
...++.|++|+++|++..+..+.+..+|..+++.++ ...+||+.+++.....++..+...++||+|+++..++
T Consensus 148 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 227 (481)
T TIGR00879 148 VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKG 227 (481)
T ss_pred HHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcC
Confidence 999999999999999999999999999998888877 3457998888866655666666677899999998888
Q ss_pred CHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhh-ccchhHHHhhcCcc-hhHHHHHHHHHHHHhhhhhhhHHHHh
Q psy13206 182 RDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREM-KLSDDFMDIISTPA-NRRSLLIVQIVAVADVISGMSAVLPY 259 (478)
Q Consensus 182 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (478)
+.+++.+.....++...+... ...+.+......+.+. .....+.+.++..+ .++.......+.......+......+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (481)
T TIGR00879 228 RVEEARKSLARLRGTSGEDKE-LLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYY 306 (481)
T ss_pred ChHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHH
Confidence 888877766655443322111 1111111111111111 11111333333211 12233333333333233333334445
Q ss_pred HHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchH
Q psy13206 260 ASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWI 339 (478)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (478)
.+....+.+.+............++.+++.++.++++||+|||+.+..+.++.+++.+.+.......... .+ ....+.
T Consensus 307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ 384 (481)
T TIGR00879 307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG-SS-KSSGNV 384 (481)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC-cc-cchhHH
Confidence 5555554444332334445556677788999999999999999998888776666655544221111100 00 000222
Q ss_pred HHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q psy13206 340 PLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGV 419 (478)
Q Consensus 340 ~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~ 419 (478)
.......+..+++.+.++....+.+|.+|++.|+++.++.+...++++++++.+.+.+.++.++...|++.++.+++.++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i 464 (481)
T TIGR00879 385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLI 464 (481)
T ss_pred HHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHH
Confidence 23334445556666667777888899999999999999999999999999999999998888877778788877788888
Q ss_pred HhheeecCCCCCCHH
Q psy13206 420 LVYFIIPESKGKTFA 434 (478)
Q Consensus 420 ~~~~~~pEt~~~~~~ 434 (478)
+.+++.||+++++.+
T Consensus 465 ~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 465 FVYFFLPETKGRTLE 479 (481)
T ss_pred HHheecccCCCCChh
Confidence 888889999877654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=301.95 Aligned_cols=354 Identities=18% Similarity=0.175 Sum_probs=230.2
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHH--------HHHHHHHHhhhhhhhhhhhhhh
Q psy13206 41 VSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYV--------LYVVRFMQGLAMGIVFTVAPMY 112 (478)
Q Consensus 41 ~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~--------l~~~R~l~G~~~g~~~~~~~~~ 112 (478)
.++.++++.+|++++|+++||+|||+++.+++++++++++++++++|+++ ++++|+++|++.|+.++.+..+
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 58889999999999999999999999999999999999999999999875 8999999999999999999999
Q ss_pred hhhccccccchhhhHHHHHHHHHhHHHHhhcC------------CccchhhHHHHHHHHHHHHHHhhccccCChHHHHHc
Q psy13206 113 IGEISGAKCRGALSTFFIGMLNTGILLEYTVG------------PYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMK 180 (478)
Q Consensus 113 ~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~ 180 (478)
+.|++|+++||+..++.+.+...|.+++..+. ...+||+.+++...+.++.++...++||||+|...+
T Consensus 143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~ 222 (490)
T PRK10642 143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHV 222 (490)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Confidence 99999999999999998877777776654322 135899999887655555555566799999987543
Q ss_pred CCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhH
Q psy13206 181 GRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYA 260 (478)
Q Consensus 181 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (478)
++.++..+ +. . ++..+.++++.++. +++.+.......+. ....++.+..|.
T Consensus 223 ~~~~~~~~---------~~-----------~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~ 273 (490)
T PRK10642 223 DKLEQGDR---------EG-----------L------QDGPKVSFKEIATK--HWRSLLTCIGLVIA-TNVTYYMLLTYM 273 (490)
T ss_pred Hhhhhhcc---------cc-----------c------cccccCCHHHHHHH--hHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 32211100 00 0 00011234444432 23333322222221 223344455677
Q ss_pred HHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchH
Q psy13206 261 SSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWI 339 (478)
Q Consensus 261 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (478)
+.++.+..+ +............++.+++.++.|+++||+|||+.+..+.++..+..+... ..... .....
T Consensus 274 p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~ 344 (490)
T PRK10642 274 PSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAF--ILINS-------NVIGL 344 (490)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--HHHhC-------CCHHH
Confidence 776654322 211222233334556667888899999999999987766554332222111 11110 00111
Q ss_pred HHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHH
Q psy13206 340 PLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG-VYLNFYIYSLGCIICG 418 (478)
Q Consensus 340 ~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~l~~ 418 (478)
.........++++.+.+ ..+.+.+|++|++.||++.|+.+..+.+++.++|.+.+++.+..+ ++.++++..+..++..
T Consensus 345 ~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~ 423 (490)
T PRK10642 345 IFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL 423 (490)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 11122222233332222 345677899999999999999877788888899999998887655 3444444444444433
Q ss_pred HHhheeecCCCCCCHH
Q psy13206 419 VLVYFIIPESKGKTFA 434 (478)
Q Consensus 419 ~~~~~~~pEt~~~~~~ 434 (478)
+ ..+++|||+++..+
T Consensus 424 ~-~~~~~pes~~~~~~ 438 (490)
T PRK10642 424 I-TGVTMKETANRPLK 438 (490)
T ss_pred H-HHHHhccccCCCCC
Confidence 3 44567999877653
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=297.87 Aligned_cols=391 Identities=24% Similarity=0.275 Sum_probs=274.1
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
....+.....+..+++++|..+|++++|+++||+|||++++.+.++.+++.+++++++|++.+++.|+++|++.++.+.+
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence 33445666788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCcc-chhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHHHHH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV-DYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDAR 187 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~a~ 187 (478)
+.+++.|+.++++|+.+.++....+..|.++....+... +||++.++..++.++.++.++..||||||+..+||.+||.
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~ 271 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAI 271 (521)
T ss_pred hHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHH
Confidence 999999999999999999995555555555444444332 7999999888877777666666679999999999999999
Q ss_pred HHHHHHhCCCC---CchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHH
Q psy13206 188 KSLFWLRGGRE---SSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTF 264 (478)
Q Consensus 188 ~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (478)
+.+++..+.+. ...+..+.+. ..+.........+..+.++++.+..++++......++... ...|... +
T Consensus 272 ~~l~~~a~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~------~~y~gl~-~ 343 (521)
T KOG0255|consen 272 KILKKIAKLNGRKLSVKELLRLEL-LLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFS------LVYYGLS-L 343 (521)
T ss_pred HHHHHHHhhcCCCCCcHHHHHHHH-HhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHh------HHHHhhh-h
Confidence 99999865431 1111111111 1111111111223457888887766766666555442211 1111111 1
Q ss_pred HhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHH
Q psy13206 265 ARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISI 344 (478)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (478)
.....+ .+......+.+....++....+...|+.|||..+..+....+++++..+...... ..+...+..
T Consensus 344 ~~~~lg-~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 413 (521)
T KOG0255|consen 344 NVSGLG-GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL---------GGWLHWILP 413 (521)
T ss_pred hhhhcC-chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc---------hhHHHHHHH
Confidence 111111 2334444555667777888889999999999999999888888877665432111 001111111
Q ss_pred HHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhee
Q psy13206 345 TCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFI 424 (478)
Q Consensus 345 ~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 424 (478)
..-.++.+.+.. +.+.+.+|++|+..|+++.+.++..+.+++.++|.+...... +.....+.+++....+.+.+...+
T Consensus 414 ~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 491 (521)
T KOG0255|consen 414 LLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLL 491 (521)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhc
Confidence 222222222222 347889999999999999999999999999998888654444 333333333566677777777799
Q ss_pred ecCCCCCCHHHHHHH
Q psy13206 425 IPESKGKTFAQIQEE 439 (478)
Q Consensus 425 ~pEt~~~~~~~~~~~ 439 (478)
+|||+++.+++..++
T Consensus 492 lpet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 492 LPETKGKPLPGTLLD 506 (521)
T ss_pred CcccCCCCCchhHHH
Confidence 999999998665443
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=286.71 Aligned_cols=392 Identities=18% Similarity=0.197 Sum_probs=261.1
Q ss_pred CcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhh-------HHHHHHHHHHHh
Q psy13206 27 ETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKH-------VYVLYVVRFMQG 99 (478)
Q Consensus 27 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~-------~~~l~~~R~l~G 99 (478)
++.-+..+.-.+.+..+-++|.++||+++|+++||+|||+++...++++++++++++++.+ .+.|++.|+++|
T Consensus 76 ~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LG 155 (538)
T KOG0252|consen 76 ESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLG 155 (538)
T ss_pred CCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhh
Confidence 3344566777899999999999999999999999999999999999999999998888743 589999999999
Q ss_pred hhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC-----------------c--cchhhHHHHHHHHH
Q psy13206 100 LAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP-----------------Y--VDYDTLAYVSLVIP 160 (478)
Q Consensus 100 ~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~-----------------~--~~~~~~~~~~~~~~ 160 (478)
+|+|++||.+.+.++|.+..+.||...+....++..|++.+.+++. . .-||..+-++.+++
T Consensus 156 iGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa 235 (538)
T KOG0252|consen 156 IGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPA 235 (538)
T ss_pred ccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888777777776655544321 1 13888888888888
Q ss_pred HHHHHhhccccCChHHHHHc-CCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHH---HHHhhccchhHHHhhcCcchhH
Q psy13206 161 VVFLMTFIWMPESPYFLIMK-GRDVDARKSLFWLRGGRESSKDKINLELSNIKQD---VEREMKLSDDFMDIISTPANRR 236 (478)
Q Consensus 161 ~~~~~~~~~~pESp~~l~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 236 (478)
++.+..++.||||++|-... ++.++|. ....+..+. ++++.+.. .+.+++....+...+... .-+
T Consensus 236 ~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~~-------~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~ 304 (538)
T KOG0252|consen 236 LLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLSV-------DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGK 304 (538)
T ss_pred HHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccccccc-------ccchhhccccCCCCcccccchHHHHHHHH-HHH
Confidence 88888888899999997543 3444443 111111110 11100000 000001111122333211 223
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchh-----h----HHHHHHHHHHHhhhhhHhhhhcCCchhHHH
Q psy13206 237 SLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDE-----C----TLLLGILVFLSTFPTAFLVDRTGRRPLLLV 307 (478)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~ 307 (478)
+++-....++. .-...+....+...++...+........ . .++.....++|..++..++|++|||++.+.
T Consensus 305 ~Llgt~~~WFl-lDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 305 HLLGTAGTWFL-LDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHh-hhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 33333333332 1122223333444444433321111111 1 111222233455566778999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHH
Q psy13206 308 SCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVIS 387 (478)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~ 387 (478)
+++++.+..+.++..+-. .. ...+... .-....++..+|.+.....+++|.||+++||++-|+..+.+..|+
T Consensus 384 GF~~~~i~~~~~~~~y~~----~~--~~~Gf~v--~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GA 455 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQ----LE--NTIGFVV--LYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGA 455 (538)
T ss_pred hHHHHHHHHHHHcCCccc----cc--ccCceee--hHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchH
Confidence 999988887776543321 11 1112221 122233445566666777899999999999999999999999999
Q ss_pred HHHHHHHHHHHH-----hcccchHHHHHHHHHHHHHHHhheeecCCCCCCHHHHHHH
Q psy13206 388 FLVMKMYQVICD-----HYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEE 439 (478)
Q Consensus 388 ~i~~~~~~~l~~-----~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~~~~~~~~ 439 (478)
.++...+.++.+ ..+....+++++ .+.+.+++.-+++|||++++++|++++
T Consensus 456 ivg~~~F~~~t~~~yp~~~g~~~v~~i~~-~~~~~gi~~T~l~pEtk~~~leei~~e 511 (538)
T KOG0252|consen 456 IVGAFGFLYLTDHNYPPNIGVRNVFIILA-GCMLLGILFTLLIPETKGKSLEEISNE 511 (538)
T ss_pred HHHHHHhhHhhhccCCccccchHHHHHHH-HHHHHhHheeEEeecccccCHHHhcCh
Confidence 999999999988 556666677766 456666766788899999999988554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=268.91 Aligned_cols=340 Identities=19% Similarity=0.187 Sum_probs=209.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhhhhhhhhhhh
Q psy13206 40 VVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVY--------VLYVVRFMQGLAMGIVFTVAPM 111 (478)
Q Consensus 40 ~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~--------~l~~~R~l~G~~~g~~~~~~~~ 111 (478)
+.+..+++..+|++++|+++||+|||+++..+.++++++++++++++|+. .++++|+++|++.|+.++.+.+
T Consensus 68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~ 147 (432)
T PRK10406 68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT 147 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH
Confidence 34455566669999999999999999999999999999999999999874 6999999999999999999999
Q ss_pred hhhhccccccchhhhHHHHHHHHHhHHHHhhcC------------CccchhhHHHHHHHHHHHHHHhhccccCChHHHHH
Q psy13206 112 YIGEISGAKCRGALSTFFIGMLNTGILLEYTVG------------PYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIM 179 (478)
Q Consensus 112 ~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~ 179 (478)
++.|+.|+++||+..+..+.+...|.+++..++ +..+||..+++..++.++..+....+||||++...
T Consensus 148 ~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~ 227 (432)
T PRK10406 148 YMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR 227 (432)
T ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh
Confidence 999999999999999888887777776665432 14689999988777666666666678998754210
Q ss_pred cCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHh
Q psy13206 180 KGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPY 259 (478)
Q Consensus 180 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (478)
+ . ++ ..++++++++ ++.+...... .......++.+..|
T Consensus 228 ~----------------~-------------------~~---~~~~~~l~~~---~~~~~~~~~~-~~~~~~~~~~~~~~ 265 (432)
T PRK10406 228 A----------------L-------------------KE---AGSLKGLWRN---RRAFIMVLGF-TAAGSLCFYTFTTY 265 (432)
T ss_pred h----------------h-------------------cc---cccHHHHHhh---HHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 0 0 00 1123334432 2222221111 11112233445567
Q ss_pred HHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccch
Q psy13206 260 ASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNW 338 (478)
Q Consensus 260 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 338 (478)
.+.++.+..+ +.........+..+...++..+.|+++||+|||+.+..+.++.++....... ..... ...+
T Consensus 266 lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~ 337 (432)
T PRK10406 266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILS-ALQNV-------SSPY 337 (432)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH-HHHcC-------CcHH
Confidence 7776654322 2111122223334455667778899999999999876655443332221111 01000 0011
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHH-HHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy13206 339 IPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVI-SFLVMKMYQVICDHYGVYLNFYIYSLGCIIC 417 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg-~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~ 417 (478)
..........+..+. ..+..+.+.+|++|++.|+++.|+++..+++. +...|.+.+.+ +..|.+...+++.....+.
T Consensus 338 ~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i 415 (432)
T PRK10406 338 AAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVV 415 (432)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHH
Confidence 111111111111111 12345678899999999999999999887763 44466666644 5556444444444344444
Q ss_pred HHHhheeecCCCCCC
Q psy13206 418 GVLVYFIIPESKGKT 432 (478)
Q Consensus 418 ~~~~~~~~pEt~~~~ 432 (478)
+++...+ .|+++|+
T Consensus 416 ~~~~~~~-l~~~~~~ 429 (432)
T PRK10406 416 AFLVSLM-LHRKGKG 429 (432)
T ss_pred HHHHHHH-hhhcccc
Confidence 4433333 3444443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=264.26 Aligned_cols=343 Identities=19% Similarity=0.168 Sum_probs=216.8
Q ss_pred HHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhhhhhhhhhhhhh
Q psy13206 42 SIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVY--------VLYVVRFMQGLAMGIVFTVAPMYI 113 (478)
Q Consensus 42 s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~--------~l~~~R~l~G~~~g~~~~~~~~~~ 113 (478)
++.+++..+|++++|+++||+|||+++..+.++++++++++++++|++ .++++|+++|++.|+.++.+..++
T Consensus 71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 150 (438)
T PRK09952 71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA 150 (438)
T ss_pred HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 456788999999999999999999999999999999999999999987 589999999999999999999999
Q ss_pred hhccccccchhhhHHHHHHHHHhHHHHhhcC------------CccchhhHHHHHHHHHHHHHHhhccccCChHHHHHcC
Q psy13206 114 GEISGAKCRGALSTFFIGMLNTGILLEYTVG------------PYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKG 181 (478)
Q Consensus 114 ~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~ 181 (478)
.|++|+++||+..+..+.+..+|.+++..+. ...+||..+++..++.++.......+||||+|...++
T Consensus 151 ~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~ 230 (438)
T PRK09952 151 VESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQH 230 (438)
T ss_pred HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHh
Confidence 9999999999999999998888887765432 1358999888776655554445556899998764432
Q ss_pred CHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHH
Q psy13206 182 RDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYAS 261 (478)
Q Consensus 182 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (478)
+.++.+ ++ .......++++ +.+.......++ ...+.+....|.+
T Consensus 231 ~~~~~~----------~~----------------------~~~~~~l~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~ 274 (438)
T PRK09952 231 EQAAAK----------KR----------------------IPVIEALLRHP---GAFLKIIALRLC-ELLTMYIVTAFAL 274 (438)
T ss_pred hccccc----------cc----------------------CCHHHHHHHch---HHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 211100 00 00001111211 111211111111 1223333445555
Q ss_pred HHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHH
Q psy13206 262 STFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIP 340 (478)
Q Consensus 262 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (478)
.++.+..+ +.........+.++..+++.++.|+++||+|||+.+..+.++..++.+..... .... ...+..
T Consensus 275 ~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~ 346 (438)
T PRK09952 275 NYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMA-LEAQ-------SIFWIV 346 (438)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-HHcC-------ChHHHH
Confidence 55443322 11111123334455666778889999999999998877665544433221111 1000 001111
Q ss_pred HHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHH-HHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHH
Q psy13206 341 LISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLT-VISFLVMKMYQVICDHYG-VYLNFYIYSLGCIICG 418 (478)
Q Consensus 341 ~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~-lg~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~l~~ 418 (478)
........+..+. ..+..+.+.+|.+|++.|+++.++.+..+. +++.++|.+.+.+.+..+ .+...+.+...+.+.+
T Consensus 347 ~~~~~l~~~~~~~-~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~ 425 (438)
T PRK09952 347 FFSIMLANIAHDM-VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLIS 425 (438)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 1111111222221 234467888999999999999999876655 788999999999887543 3333333333444444
Q ss_pred HHhheeecCCC
Q psy13206 419 VLVYFIIPESK 429 (478)
Q Consensus 419 ~~~~~~~pEt~ 429 (478)
.+..+.++||.
T Consensus 426 ~v~~~~~~~~~ 436 (438)
T PRK09952 426 AMTALLMKDNQ 436 (438)
T ss_pred HHHHHHccccc
Confidence 44445567653
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=251.79 Aligned_cols=346 Identities=12% Similarity=0.101 Sum_probs=224.7
Q ss_pred eecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh
Q psy13206 7 GWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK 86 (478)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~ 86 (478)
...++.+|.+.+ ++++|+.|.|++.+.+++|+.+++++.|+++||+|||+++..+......+......++
T Consensus 8 ~~~~~~lp~i~~----------~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 77 (368)
T TIGR00903 8 VTFSPVLSLVAE----------DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF 77 (368)
T ss_pred HHHHhhHHHHHH----------HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc
Confidence 344566777765 5788999999999999999999999999999999999987766555555443333347
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHH
Q psy13206 87 HVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVV 162 (478)
Q Consensus 87 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~ 162 (478)
|++.++++|+++|++.|. .+.....++|+.|+++|+++.+..+.+..+|.++++.++.. .+||..++....++++
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~ 156 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAA 156 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 999999999999999996 56667777999999999999999999999998887776643 5899988876655554
Q ss_pred H-HHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHH
Q psy13206 163 F-LMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIV 241 (478)
Q Consensus 163 ~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (478)
. ++.+.++||+|++. ++ ..+ .. +. ..+++++++++.. +..
T Consensus 157 ~~~~~~~~lp~~p~~~---~~--------------~~~----~~----~~----------~~~~~~ll~~~~~----~~~ 197 (368)
T TIGR00903 157 GIILVLAALPALPFQA---AE--------------GFG----FK----DA----------VKEFGALAGRKDL----WII 197 (368)
T ss_pred HHHHHHHHcCCCCCCC---CC--------------Ccc----hH----HH----------HHHHHHHHcChhH----HHH
Confidence 3 44556789999642 10 000 00 00 0123445543322 111
Q ss_pred HHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCc---hhHHH-hhHHHHHHHH
Q psy13206 242 QIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRR---PLLLV-SCFGSGISQL 317 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr---~~l~~-~~~~~~i~~~ 317 (478)
. ...+.....++.+..|.|.++.+.+.+ .. ......+..+.+.+..++++||..|| +.... ..+..++...
T Consensus 198 ~-~~~~~~~~~~~~~~~wlp~~L~~~g~s-~~---~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~ 272 (368)
T TIGR00903 198 G-AILGFGVALFDNLAIWLEAALRPAGLE-DI---AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFL 272 (368)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHCCCC-hH---HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1 122223344556667888888654332 11 23334444455555568888887654 32222 2222222221
Q ss_pred HHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13206 318 IAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVI 397 (478)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l 397 (478)
++. . .. ..+. .+...+...++..+..+..+.+++|.+|++.||++.|+.+..+++++..+|.+.+.+
T Consensus 273 ~~~---~-~~--------~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~ 339 (368)
T TIGR00903 273 ALA---F-EL--------NRLA-LFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLF 339 (368)
T ss_pred HHH---H-cc--------ccHH-HHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHH
Confidence 111 0 10 0111 111121111222223344678899999999999999999999999999999999877
Q ss_pred HHhcccchHHHHHHHHHHHHHHHhh
Q psy13206 398 CDHYGVYLNFYIYSLGCIICGVLVY 422 (478)
Q Consensus 398 ~~~~g~~~~~~~~~~~~~l~~~~~~ 422 (478)
.. +....|.++++..++.++.+.
T Consensus 340 ~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 340 IS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred hc--CHHHHHHHHHHHHHHHHHHHH
Confidence 63 545667777777777666653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-30 Score=257.59 Aligned_cols=336 Identities=17% Similarity=0.191 Sum_probs=226.4
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
++++++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++..+++++++++++++.++++|+++|++.|+.++.
T Consensus 47 ~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~ 126 (426)
T PRK12307 47 DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYAC 126 (426)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDV 184 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~ 184 (478)
...++.|+.|+++|+++.++...+..+|.++++.+++ ..+||+.+++.....++.+......||+++|...+.+.
T Consensus 127 ~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~- 205 (426)
T PRK12307 127 ASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG- 205 (426)
T ss_pred HHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc-
Confidence 9999999999999999999999988888887766543 45899888765443333333344468887654321100
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHH
Q psy13206 185 DARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTF 264 (478)
Q Consensus 185 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (478)
..+..+. . ......++++.++++..+..+.. ....+ ........+..+.+..+
T Consensus 206 -----------~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 258 (426)
T PRK12307 206 -----------KGKHSQS-A-------------WSVFSLSMKGLFNRAQFPLTLCV-FIVLF-SIFGANWPIFGLLPTYL 258 (426)
T ss_pred -----------ccccccc-c-------------hhhhhHHHHHHHhhchHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHH
Confidence 0000000 0 00001123444544333222211 11111 11122222334555555
Q ss_pred HhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHH
Q psy13206 265 ARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISI 344 (478)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (478)
.+.+.+.........+..++.+++.++.+++.||+|||+.+..+.++.++..+.+.. . .. ... ..+..
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~--~-~~--------~~~-~~~~~ 326 (426)
T PRK12307 259 AGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFR--I-PQ--------DNY-LLLGA 326 (426)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH--H-cc--------ccH-HHHHH
Confidence 543322122222334456677888999999999999999887776665544332211 0 10 011 11122
Q ss_pred HHHHHHH-HhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy13206 345 TCFAVIY-SIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVY 404 (478)
Q Consensus 345 ~~~~~~~-~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~ 404 (478)
..+...+ ..+..+..+.++.|.+|++.||++.|+.+..+.+++.++|.+.+.+.+..+..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~ 387 (426)
T PRK12307 327 CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLG 387 (426)
T ss_pred HHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHH
Confidence 2222222 22334456678899999999999999999999999999999999998888743
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=257.58 Aligned_cols=345 Identities=14% Similarity=0.174 Sum_probs=225.5
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++++..+.+++.+++++++.+++++.|+++||+|||+++..+.+++.++++++++++|++.++++|+++|++.|+..+.
T Consensus 37 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 116 (412)
T TIGR02332 37 DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPG 116 (412)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----------ccchhhHHHHHHHHHHHH-HHhhccccCChH--
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----------YVDYDTLAYVSLVIPVVF-LMTFIWMPESPY-- 175 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----------~~~~~~~~~~~~~~~~~~-~~~~~~~pESp~-- 175 (478)
...++.|++|+++||+..++.+....+|..+++.++. ..+||+.+++...+.++. .+.++++||+|+
T Consensus 117 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~ 196 (412)
T TIGR02332 117 ILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA 196 (412)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC
Confidence 9999999999999999999999998888887766642 248999888766555443 345566899984
Q ss_pred -HHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhh
Q psy13206 176 -FLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMS 254 (478)
Q Consensus 176 -~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (478)
|+..+ +.+...+..++...+.++ + + ++.+ +++...+..+++.++ + ..+.. .....+...++.
T Consensus 197 ~~l~~~----~~~~~~~~~~~~~~~~~~--~-~-~~~~---~~~~~~~~~~~~~~~-~----~~~~~-~~~~~~~~~~~~ 259 (412)
T TIGR02332 197 KWLDEE----DKKALKEMIDNDQLTLEQ--P-E-GAFA---HAAMPQRSMLREIFT-P----AIMLY-TLAYFCLTNTLS 259 (412)
T ss_pred CCCCHH----HHHHHHHHHHhccccccc--c-c-cccc---cccccHHHHHHHhcC-h----HHHHH-HHHHHHHHHHHH
Confidence 33211 111111111110000000 0 0 0000 000000111222221 1 11221 222222334455
Q ss_pred HHHHhHHHHHHhcC--CCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhH-HHhhHHHHHHHHHHHHHHhhcccccc
Q psy13206 255 AVLPYASSTFARTE--GSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLL-LVSCFGSGISQLIAGTYYLLSENYTV 331 (478)
Q Consensus 255 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~ 331 (478)
.+..|.|.++.+.+ .+............++..++.+..++++||++||+.. ....+..++.. ++... ..
T Consensus 260 ~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~---~~---- 331 (412)
T TIGR02332 260 AINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA---TD---- 331 (412)
T ss_pred HHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh---cC----
Confidence 66678888776532 1222333345556777888999999999999988753 33332323222 11110 10
Q ss_pred cccccchHHHHHHHHHHHHHHh-cccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy13206 332 DLSKFNWIPLISITCFAVIYSI-GLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVY 404 (478)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~-g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~ 404 (478)
........+.. ..++. ...+..+....|.+|++.|+++.|+.+..+++|++++|.+.+.+.+..|.+
T Consensus 332 ----~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~ 399 (412)
T TIGR02332 332 ----HNLIQLLGIIM--ASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSF 399 (412)
T ss_pred ----CHHHHHHHHHH--HHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCC
Confidence 01111111111 11221 122334556678999999999999999999999999999999998887643
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=251.86 Aligned_cols=347 Identities=16% Similarity=0.176 Sum_probs=226.8
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
++++++.+.+++.+++.++..+++++.|+++||+|||++++++.++..+++++++++++++.+++.|+++|++.|..++.
T Consensus 41 ~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 120 (405)
T TIGR00891 41 EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGS 120 (405)
T ss_pred HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccc--hhhHHHHHHHHHHHHHHhhccccCChHHHHHcCC
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVD--YDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGR 182 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~--~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~ 182 (478)
...++.|+.|+++|+++.++.+....+|..+++.++. ..+ ||+.+++.....++.++....+||+|++...+++
T Consensus 121 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (405)
T TIGR00891 121 SAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAG 200 (405)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhh
Confidence 9999999999999999999999888888877766543 233 8888877665555555566678999887644332
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHH
Q psy13206 183 DVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASS 262 (478)
Q Consensus 183 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (478)
.++..+..+...+.++. .....+ ......++.. ++.+............ ..........+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~----~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 263 (405)
T TIGR00891 201 KALVRTMVDILYGGEHR----IANIVM----------TLAAAMVQSA--GKRWPTFVYLVVLVLF-ANLYSHPIQDLLPT 263 (405)
T ss_pred hhhhhhHHHHHhccchh----hhhhhh----------hhhHHhhhhh--hhhhHHHHHHHHHHHH-HHHHHhhhhhhhHH
Confidence 22222111111110000 000000 0000011100 0111111111111111 11111122233444
Q ss_pred HHHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHH
Q psy13206 263 TFART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPL 341 (478)
Q Consensus 263 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (478)
++.+. +.+............++.+++.++.+++.||+|||+.+..+.+..++..+... .. .. ..+...
T Consensus 264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~--~~-~~--------~~~~~~ 332 (405)
T TIGR00891 264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVF--AI-GA--------NVAVLG 332 (405)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHH--Hh-CC--------chHHHH
Confidence 44332 22212222333445677788999999999999999988776655433222111 11 10 111111
Q ss_pred HHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy13206 342 ISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVY 404 (478)
Q Consensus 342 ~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~ 404 (478)
... ....+...+..+..+.+.+|.+|++.||++.|+.+..+.+++.++|.+.+.+.++.|.+
T Consensus 333 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~ 394 (405)
T TIGR00891 333 LGL-FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEY 394 (405)
T ss_pred HHH-HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 111 11122233344566778899999999999999999999999999999999999998854
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=248.75 Aligned_cols=342 Identities=19% Similarity=0.188 Sum_probs=229.5
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.+++++++|++.+++.|+++|++.|...+.
T Consensus 44 ~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~ 123 (406)
T PRK11551 44 EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPN 123 (406)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHH-HHhhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVF-LMTFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~-~~~~~~~pESp~~l~~~~~~ 183 (478)
...++.|+.|+++|++..+........|..+++.++ ...+|+..+++....+++. .+...++||+|++...+++.
T Consensus 124 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 203 (406)
T PRK11551 124 LIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG 203 (406)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc
Confidence 999999999999999999999888888877776665 3457888777655444443 33455689998754322110
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
++.+ + . ....++.+..++..... .. .............|.+.+
T Consensus 204 ~~~~-------------------~---~-------------~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~p~~ 246 (406)
T PRK11551 204 KQRA-------------------P---V-------------LRALFGEGRATATLLLW-IS-YFFTLIVLYFLLNWLPSL 246 (406)
T ss_pred hhhh-------------------h---h-------------HHHHhhhhhhhHHHHHH-HH-HHHHHHHHHHHHHHHHHH
Confidence 0000 0 0 00001101111111111 11 111112223344455666
Q ss_pred HHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHH
Q psy13206 264 FARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLIS 343 (478)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (478)
+.+.+.+............++.+++.++.|++.||+|||+.+..+.+..+++.+.+.. .+ ..+...+.
T Consensus 247 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~~ 314 (406)
T PRK11551 247 LVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA----AP--------SFAGMLLA 314 (406)
T ss_pred HHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh----cC--------cHHHHHHH
Confidence 6554433333344455566778889999999999999999887655554444332211 00 01111111
Q ss_pred HHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q psy13206 344 ITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVL 420 (478)
Q Consensus 344 ~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~ 420 (478)
....++ ...+..+..+.+.+|.+|++.|+++.|+.+....++..++|.+.+.+.++.+.+...+...+.+.+.+++
T Consensus 315 ~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 390 (406)
T PRK11551 315 GFAAGL-FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAAL 390 (406)
T ss_pred HHHHHH-HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHH
Confidence 111111 1122334566788999999999999999999999999999999999988766544333333333433333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=252.67 Aligned_cols=368 Identities=13% Similarity=0.106 Sum_probs=232.4
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
++++++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++..++++++++++|++.+++.|++.|++.|..++.
T Consensus 52 ~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~ 131 (434)
T PRK11663 52 DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPV 131 (434)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHH-HHhhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVF-LMTFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~-~~~~~~~pESp~~l~~~~~~ 183 (478)
...++.|++|+++||+..++.+....+|..+++.++ ...+||+.+++..++.++. ++...++||+|++.......
T Consensus 132 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~ 211 (434)
T PRK11663 132 CAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVG 211 (434)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcc
Confidence 999999999999999999999888888887766543 3468998887665544433 33445678988643111000
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchh-HHHHHHHHHHHHhhhhhhhHHHHhHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANR-RSLLIVQIVAVADVISGMSAVLPYASS 262 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (478)
++. ++ . . +..+ +++ +.+.+.++.++....+ +..+... ............+..|.+.
T Consensus 212 ~~~-----------~~----~-~---~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ 268 (434)
T PRK11663 212 EWR-----------HD----A-L---ELAQ--QQE-GAGLSRKEILTKYVLLNPYIWLLS-FSYVLVYVVRAAINDWGNL 268 (434)
T ss_pred ccc-----------cc----c-c---ccch--hcc-ccCCChhhhHHHHHhcChHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 000 00 0 0 0000 000 0001111111100001 1111111 1111112223344456666
Q ss_pred HHHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhc--CCchhH-HHhhHHHHHHHHHHHHHHhhcccccccccccch
Q psy13206 263 TFART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRT--GRRPLL-LVSCFGSGISQLIAGTYYLLSENYTVDLSKFNW 338 (478)
Q Consensus 263 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~--GRr~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 338 (478)
++.+. +.+.........+..++.+++.++.|++.||+ +||+.. ....+...+....+ ... .. ...
T Consensus 269 ~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~--~~~-~~--------~~~ 337 (434)
T PRK11663 269 YMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSL--WLM-PF--------ASY 337 (434)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHH--HHc-cc--------ccH
Confidence 66443 32323333444556677888999999999998 333332 22222211111111 110 00 011
Q ss_pred HHHHHHHHHHHHH-HhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy13206 339 IPLISITCFAVIY-SIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIIC 417 (478)
Q Consensus 339 ~~~~~~~~~~~~~-~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~ 417 (478)
.... ...+...+ ..+.......+++|.+|++.||++.|+.+..+.+|..++|.+++++.++.|+...++..++..++.
T Consensus 338 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~ 416 (434)
T PRK11663 338 VMQA-ACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGIS 416 (434)
T ss_pred HHHH-HHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHH
Confidence 1111 11111111 111112234567899999999999999999999999999999999999988777777777666666
Q ss_pred HHHhheeecCCCCC
Q psy13206 418 GVLVYFIIPESKGK 431 (478)
Q Consensus 418 ~~~~~~~~pEt~~~ 431 (478)
++..+...++.+++
T Consensus 417 ~~~~~~~~~~~~~~ 430 (434)
T PRK11663 417 ALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHHHhhhchh
Confidence 66655555554433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=248.41 Aligned_cols=324 Identities=17% Similarity=0.196 Sum_probs=199.9
Q ss_pred cccCcchhhHH-HHHH-----HHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHH--------HHHHHH
Q psy13206 30 IEMTSAESSWV-VSII-----ELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVY--------VLYVVR 95 (478)
Q Consensus 30 ~~~~~~~~~~~-~s~~-----~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~--------~l~~~R 95 (478)
++.++.+.+++ .+.. +++..+|+++.|+++||+|||+.++.+.+++.+++++++++++++ .++++|
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R 124 (434)
T PRK15075 45 FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGR 124 (434)
T ss_pred hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 45555555433 3322 344468999999999999999999999999999999999999987 479999
Q ss_pred HHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC------------CccchhhHHHHHHHHHHHH
Q psy13206 96 FMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG------------PYVDYDTLAYVSLVIPVVF 163 (478)
Q Consensus 96 ~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g------------~~~~~~~~~~~~~~~~~~~ 163 (478)
+++|++.|...+....+++|++|+++||+..++.......|..+++.+| ...+||+.+++......+.
T Consensus 125 ~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~ 204 (434)
T PRK15075 125 LLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFI 204 (434)
T ss_pred HHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987776655554433332 2358998887655433333
Q ss_pred HHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHH
Q psy13206 164 LMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQI 243 (478)
Q Consensus 164 ~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (478)
.......||++.+...+++ . +.+..+++.. +.++.......
T Consensus 205 ~~~~~~~~e~~~~~~~~~~---------------~---------------------~~~~~~~~~~---~~~~~~~~~~~ 245 (434)
T PRK15075 205 FLIRRSLEETEEFLARKHR---------------P---------------------SMREIFRSLA---ANWRIVLAGML 245 (434)
T ss_pred HHHHHhcCCCHHHHHhhhc---------------c---------------------ccccHHHHHH---HhHHHHHHHHH
Confidence 3333345555432211000 0 0000011111 11222222222
Q ss_pred HHHHhhhhhhhHHHHhHHHHHHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHH
Q psy13206 244 VAVADVISGMSAVLPYASSTFART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTY 322 (478)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~ 322 (478)
.. .....+++....|.+.++.+. +.+............++.++++++.|+++||+|||+.+..+.++..+.... ...
T Consensus 246 ~~-~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~-~~~ 323 (434)
T PRK15075 246 MV-AMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYP-ALS 323 (434)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-HHH
Confidence 21 112334445566777776653 332222233444556777888999999999999999877654433322111 101
Q ss_pred HhhcccccccccccchHHH-HHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q psy13206 323 YLLSENYTVDLSKFNWIPL-ISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTV-ISFLVMKMYQVICDH 400 (478)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~l-g~~i~~~~~~~l~~~ 400 (478)
..... ...... ....+..++++. ..+..+.+.+|.+|++.|+++.++.+..+.. ++.++|.+.+.+.+.
T Consensus 324 ~~~~~--------~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 324 WLVAA--------PSFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred HHHcC--------CchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 11010 011111 112222233332 2334456789999999999999998666665 578899999999998
Q ss_pred ccc
Q psy13206 401 YGV 403 (478)
Q Consensus 401 ~g~ 403 (478)
.|.
T Consensus 395 ~g~ 397 (434)
T PRK15075 395 TGD 397 (434)
T ss_pred cCC
Confidence 875
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=255.07 Aligned_cols=357 Identities=14% Similarity=0.082 Sum_probs=217.1
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF-----TKHVYVLYVVRFMQGLAMG 103 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~-----a~~~~~l~~~R~l~G~~~g 103 (478)
++++++.+.|++.+++++++.+++++.|+++||+|||+++.++.+++++++++.++ ++|++.++++|+++|++.|
T Consensus 58 ~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 137 (467)
T PRK09556 58 TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQS 137 (467)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999988888877776665 5899999999999999999
Q ss_pred hhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc-------cchhhHHHHHHHHHHHH-HHhhccccCChH
Q psy13206 104 IVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY-------VDYDTLAYVSLVIPVVF-LMTFIWMPESPY 175 (478)
Q Consensus 104 ~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~-------~~~~~~~~~~~~~~~~~-~~~~~~~pESp~ 175 (478)
...+....++.||+|+++||++.++.+...++|..++..+... .+|+..+.+..++.++. ++.+.+.+++|+
T Consensus 138 ~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~ 217 (467)
T PRK09556 138 TGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE 217 (467)
T ss_pred ccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 9999999999999999999999999988888888777665421 13666555444443333 233444566664
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhcc-chhHH-HhhcCcchhHHHHHHHHHHHHhhhhhh
Q psy13206 176 FLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKL-SDDFM-DIISTPANRRSLLIVQIVAVADVISGM 253 (478)
Q Consensus 176 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (478)
....+ +.++ . ..+ .... ++ +..++++.. ...+. ..++++. .+......++ ....+
T Consensus 218 ~~~~~-~~~~---~---~~~-~~~~-----~~-----~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~-~~~~~ 274 (467)
T PRK09556 218 ELGWG-KAEE---I---FGE-PISE-----ED-----KETESTDMTKWQIFVEYVLKNPV----IWLLCFANIF-LYIVR 274 (467)
T ss_pred hcCCC-Chhh---c---ccC-ccch-----hh-----hccccccCcHHHHHHHHHHcChH----HHHHHHHHHH-HHHHH
Confidence 21100 0000 0 000 0000 00 000000000 00011 1233222 1222222111 22223
Q ss_pred hHHHHhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccc
Q psy13206 254 SAVLPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVD 332 (478)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 332 (478)
.....|.|.++.+..+ +............++.+++.++.|+++||+|||+.+.....+..+....+. +. ..
T Consensus 275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~-~~--~~----- 346 (467)
T PRK09556 275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGV-YQ--HA----- 346 (467)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHH-HH--hc-----
Confidence 3455667766654332 322333344445667789999999999999999876554333332211111 11 10
Q ss_pred ccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHH-HHHHHHHHHHHHHH------------
Q psy13206 333 LSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTV-ISFLVMKMYQVICD------------ 399 (478)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~l-g~~i~~~~~~~l~~------------ 399 (478)
...+...+....+++ ...+........+.|.+|++.||++.|+.+..+++ ++++.|.+.+.+.+
T Consensus 347 --~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~ 423 (467)
T PRK09556 347 --TSEYMYLASLFALGF-LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYT 423 (467)
T ss_pred --CcHHHHHHHHHHHHH-HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccc
Confidence 011111122221221 11111112235667999999999999999999997 66899999999988
Q ss_pred hcccchHHHHHHHHHHHHHH
Q psy13206 400 HYGVYLNFYIYSLGCIICGV 419 (478)
Q Consensus 400 ~~g~~~~~~~~~~~~~l~~~ 419 (478)
..++...|++..+..+++.+
T Consensus 424 ~~~~~~~f~~~~~~~~~~~~ 443 (467)
T PRK09556 424 LTGWAGTFAALDIAAIGCIC 443 (467)
T ss_pred ccChHHHHHHHHHHHHHHHH
Confidence 45555556555544444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=251.48 Aligned_cols=372 Identities=16% Similarity=0.160 Sum_probs=230.6
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
++++++.+.+++.+.+.+++.+++++.|+++||+|||+.+.++.++..+++++.++++|++.++++|++.|++.++.++.
T Consensus 49 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 128 (496)
T PRK03893 49 EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGS 128 (496)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDV 184 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~ 184 (478)
...++.|+.|+++|++..+.......+|..+++.++ ...+||+.+++.....++.++....+||+++|...+++.+
T Consensus 129 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 208 (496)
T PRK03893 129 SATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKA 208 (496)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccc
Confidence 999999999999999999998888888877776554 3468998877654444444444556899987754332222
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHH---HHHHhhccchhH-------------H-HhhcCcchhHHHHHHHHHHHH
Q psy13206 185 DARKSLFWLRGGRESSKDKINLELSNIKQ---DVEREMKLSDDF-------------M-DIISTPANRRSLLIVQIVAVA 247 (478)
Q Consensus 185 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~ 247 (478)
+..+..+.....+.. ........... ...........+ . .....+..++...........
T Consensus 209 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (496)
T PRK03893 209 PVRTMVDILYRGEHR---IINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVL 285 (496)
T ss_pred cchhHHHHHhcchhH---HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 111111111100000 00000000000 000000000000 0 000000011111111111111
Q ss_pred hhhhhhhHHHHhHHHHHHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhc
Q psy13206 248 DVISGMSAVLPYASSTFART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLS 326 (478)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~ 326 (478)
..+........+.+.++... +.+............++.+++.++.|+++||+|||+.+..+.++.++..+... . ..
T Consensus 286 ~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~--~-~~ 362 (496)
T PRK03893 286 FAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVF--A-IG 362 (496)
T ss_pred HHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh--h-cc
Confidence 11111112334555555422 22222233344445667778999999999999999987776555444332211 0 00
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q psy13206 327 ENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLN 406 (478)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~ 406 (478)
. ..+...........+.+.+..+..+.+.+|.+|++.||++.|+.+....+++.++|.+.+.+.+.+|....
T Consensus 363 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~ 434 (496)
T PRK03893 363 G--------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTA 434 (496)
T ss_pred c--------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHH
Confidence 0 01111111112222333444556677889999999999999999999999999999999999998886555
Q ss_pred HHHHHHHH
Q psy13206 407 FYIYSLGC 414 (478)
Q Consensus 407 ~~~~~~~~ 414 (478)
+...+..+
T Consensus 435 ~~~~~~~~ 442 (496)
T PRK03893 435 LASLSFSL 442 (496)
T ss_pred HHHHHHHH
Confidence 54444333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=241.34 Aligned_cols=343 Identities=13% Similarity=0.084 Sum_probs=226.2
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
++++|..+.+++.|++++++.+++++.|+++||+|||+++..+..+++++++++++++|++.++++|+++|++.|...+.
T Consensus 38 ~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~ 117 (393)
T PRK09705 38 ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAV 117 (393)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc-----cchhhHHHHHHHHHHHHHHhhccc-cCChHHHHHcCC
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY-----VDYDTLAYVSLVIPVVFLMTFIWM-PESPYFLIMKGR 182 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~-pESp~~l~~~~~ 182 (478)
...++.|+.| ++|+++.+........|..++..+++. .+||..+.+.....++..+.+... ++.|
T Consensus 118 ~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 188 (393)
T PRK09705 118 MPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREV-------- 188 (393)
T ss_pred hhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCC--------
Confidence 9999999997 789999999888777777776666543 368776544332222222221111 1100
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHH
Q psy13206 183 DVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASS 262 (478)
Q Consensus 183 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (478)
+++ + +++ .+..+.++++ +..... .. ......++.....|.+.
T Consensus 189 --------------~~~-~---------------~~~---~~~~~~l~~~---~~~~l~-~~-~~~~~~~~~~~~~~lp~ 230 (393)
T PRK09705 189 --------------ASS-H---------------KTT---TTPVRVVFTP---RAWTLG-VY-FGLINGGYASLIAWLPA 230 (393)
T ss_pred --------------ccc-c---------------CCC---cCCcccccCH---hHHHHH-HH-HHHHHHHHHHHHHHHHH
Confidence 000 0 000 0011111211 111111 11 11112234445566676
Q ss_pred HHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHH
Q psy13206 263 TFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLI 342 (478)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (478)
++.+.+.+.........+.+++.+++.+..+++.||+|||+.+..+..+.++....+.. ... ... ..
T Consensus 231 ~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~---~~~--------~~~--~~ 297 (393)
T PRK09705 231 FYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW---LPL--------QLP--VL 297 (393)
T ss_pred HHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH---ccc--------hHH--HH
Confidence 66654433333444555677788899999999999999999887776555554333211 110 001 11
Q ss_pred HHHHHHHHHHhcccccchhhhcccC-CccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHH
Q psy13206 343 SITCFAVIYSIGLGPLVPTLQGEFF-PSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLN-FYIYSLGCIICGVL 420 (478)
Q Consensus 343 ~~~~~~~~~~~g~g~~~~~~~~El~-p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~-~~~~~~~~~l~~~~ 420 (478)
.....++..+ +..|.......+.+ |++.||+..|+.+..+.+++.++|.+.+++.+..|.+.. +++.+..+++..+.
T Consensus 298 ~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK09705 298 WAMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMII 376 (393)
T ss_pred HHHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 1111122111 11233333444555 567899999999999999999999999999999885443 44444444455555
Q ss_pred hheeecCCCCCC
Q psy13206 421 VYFIIPESKGKT 432 (478)
Q Consensus 421 ~~~~~pEt~~~~ 432 (478)
.+.+.|||+++.
T Consensus 377 ~~~~~~~~~~~~ 388 (393)
T PRK09705 377 TLRFAPARFPQL 388 (393)
T ss_pred HHHhccccccch
Confidence 567889987665
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=233.48 Aligned_cols=334 Identities=14% Similarity=0.127 Sum_probs=222.5
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.+++.++++.+++++|++.++++|+++|++.+...+.
T Consensus 38 ~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~ 117 (390)
T PRK03545 38 SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSI 117 (390)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHH-HhhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~-~~~~~~pESp~~l~~~~~~ 183 (478)
...++.|+.|+++|+++.++.......|..+++.++. ..+||+.++....+.++.. +.+.++||.|+ +
T Consensus 118 ~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~------~- 190 (390)
T PRK03545 118 TASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS------E- 190 (390)
T ss_pred HHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC------C-
Confidence 9999999999999999999999888888877766653 4589988877665554443 33344566541 0
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
+++ .. .+..+.++++..+...... ... .........+.+.+
T Consensus 191 -------------~~~-------~~--------------~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~ 231 (390)
T PRK03545 191 -------------HSG-------SL--------------KSLPLLFRRPALVSLYLLT-VVV----VTAHFTAYSYIEPF 231 (390)
T ss_pred -------------Ccc-------hH--------------HHHHHHHhCcHHHHHHHHH-HHH----HHHHHHHHHHHHHH
Confidence 000 00 0112333333222211111 111 11112222344434
Q ss_pred HHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHH
Q psy13206 264 FART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLI 342 (478)
Q Consensus 264 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (478)
+.+. +.+...........++..+++.++.+++.||+|||++... ....+.....+... .+ ..+....
T Consensus 232 l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~---~~--------~~~~~~~ 299 (390)
T PRK03545 232 VQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPA---AN--------SEWHLSV 299 (390)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHH---hc--------hHHHHHH
Confidence 4432 2222223333444566778899999999999998875433 33323322221111 00 0111112
Q ss_pred HHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhh
Q psy13206 343 SITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVY 422 (478)
Q Consensus 343 ~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~ 422 (478)
...++++.. .+.++.......|..| +.|+++.|+.+....+|..+++.+.+.+.++++....++..++..++..++.+
T Consensus 300 ~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 300 LSIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HHHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Confidence 222222222 2234444556667766 68899999999999999999999999999999887777666655555544443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=223.89 Aligned_cols=332 Identities=18% Similarity=0.240 Sum_probs=235.8
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
|+++|..+.|++.|+|.++..+++++...+.||+.||++++..+.+++++.+++++++||+.++++|++.|++.|..++.
T Consensus 42 dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i 121 (394)
T COG2814 42 DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSI 121 (394)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhc----CCccchhhHHHHHHHHHHHHHH-hhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTV----GPYVDYDTLAYVSLVIPVVFLM-TFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~----g~~~~~~~~~~~~~~~~~~~~~-~~~~~pESp~~l~~~~~~ 183 (478)
+..+..+..|+++|+++.+....+..++.+++..+ |...+||..|+....+.++.++ .+..+| |+-
T Consensus 122 ~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~------- 192 (394)
T COG2814 122 AAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSE------- 192 (394)
T ss_pred HHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc-------
Confidence 99999999999999999999988888777766555 4567899999887777766544 444567 210
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
.+++ ......+..+.+++|+.+..+... . ..+.+.+....|...+
T Consensus 193 ------------~~~~------------------~~~~~~~~~~~l~~p~v~~~l~~t-~----l~~~g~F~~ftYi~P~ 237 (394)
T COG2814 193 ------------ISGS------------------LPGPLRTLLRLLRRPGVLLGLLAT-F----LFMTGHFALYTYIRPF 237 (394)
T ss_pred ------------CCCC------------------CCcchhHHHHHhcCchHHHHHHHH-H----HHHcchhhhHHhHHHH
Confidence 0000 000011123444444333322222 1 2244556666676666
Q ss_pred HHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHH
Q psy13206 264 FARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLI 342 (478)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (478)
+.+..+ +...-...-+.++++.++|...+|+++|| +.|+.+.....+.++..+.+... .. ..+....
T Consensus 238 L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~---~~--------~~~~~~~ 305 (394)
T COG2814 238 LESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT---GA--------SPALALA 305 (394)
T ss_pred HHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh---cc--------hHHHHHH
Confidence 665544 32333445566788899999999999999 88887777666666655443221 11 1112111
Q ss_pred HHHHHHHHHHhcccccchhhhcccC--CccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q psy13206 343 SITCFAVIYSIGLGPLVPTLQGEFF--PSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVL 420 (478)
Q Consensus 343 ~~~~~~~~~~~g~g~~~~~~~~El~--p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~ 420 (478)
.+.. .+++..|....+..++. -++.++.+.+++....++|..++..+.+.+.++.|.....++.+...++..++
T Consensus 306 ~~~~----wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~ 381 (394)
T COG2814 306 LLFL----WGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLL 381 (394)
T ss_pred HHHH----HHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 1111 33334444444443333 36889999999999999999999999999999987665555555444444433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-28 Score=237.11 Aligned_cols=364 Identities=16% Similarity=0.166 Sum_probs=229.2
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+++.+++.++..+++++.|+++||+|||+.+..+.++..+++.++++++|++.++++|+++|++.|...+.
T Consensus 23 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 102 (399)
T TIGR00893 23 DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPG 102 (399)
T ss_pred hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHH-HhhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~-~~~~~~pESp~~l~~~~~~ 183 (478)
...++.|+.|+++|++..++.+....+|.++++.++. ..+||+.++......++.. +...+.||+|+-... .+.
T Consensus 103 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 181 (399)
T TIGR00893 103 IILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKW-LTE 181 (399)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcccc-CCH
Confidence 9999999999999999999999988888887776654 3578888776655544433 334456776531100 000
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
++.....+.. .. +. +..++++....+.++.++++. ........ .........+..+.+.+
T Consensus 182 ~~~~~~~~~~---~~-----------~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~ 241 (399)
T TIGR00893 182 EEKYIVVGGL---LA-----------EQ-QGKGPSTPKKYQIKELLKDRR----VWGLALGQ-FLVNIGLGFFLTWFPTY 241 (399)
T ss_pred HHHhhcchhh---cc-----------cc-ccccccCCCccchHHHhcCHH----HHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 0000000000 00 00 000011111223444444322 11111111 11122333444555555
Q ss_pred HHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHH-hhHHHHHHHHHHHHHHhhcccccccccccchHHH
Q psy13206 264 FARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLV-SCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPL 341 (478)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (478)
+.+..+ +............+..+++.++.++++||+|||+.... ......+..+.......... . ....+ .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~--~ 314 (399)
T TIGR00893 242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN-Y----VNIPY--A 314 (399)
T ss_pred HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc-c----chhHH--H
Confidence 544322 22223334445567778899999999999999962111 11111111111111111110 0 00111 1
Q ss_pred HHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHH
Q psy13206 342 ISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG-VYLNFYIYSLGCIICGVL 420 (478)
Q Consensus 342 ~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~l~~~~ 420 (478)
.........++.+..+..+.+.+|.+|++.|+++.|+.+.+..++..+++.+.+.+.+..| ....+.+.++..++..+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 315 ALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred HHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 1111222222333466777899999999999999999999999999999999999998887 444555555444444433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=235.00 Aligned_cols=364 Identities=17% Similarity=0.195 Sum_probs=219.5
Q ss_pred ccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhhhhhh
Q psy13206 31 EMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK----HVYVLYVVRFMQGLAMGIVF 106 (478)
Q Consensus 31 ~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~----~~~~l~~~R~l~G~~~g~~~ 106 (478)
++++.+.+++.+++.+++++++++.|+++||+|||++++++.++.+++.+++++++ +++.+++.|++.|++.|..+
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999999999999999999999999999888764 78899999999999999998
Q ss_pred hhhhhhhhhccccccchhhhHHHHHHHHHhH-HHHhhcC----CccchhhHHHHHHHHHHH-HHHhhccccCChHHHHHc
Q psy13206 107 TVAPMYIGEISGAKCRGALSTFFIGMLNTGI-LLEYTVG----PYVDYDTLAYVSLVIPVV-FLMTFIWMPESPYFLIMK 180 (478)
Q Consensus 107 ~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~-~l~~~~g----~~~~~~~~~~~~~~~~~~-~~~~~~~~pESp~~l~~~ 180 (478)
+.....+.|++|+++||+..++.+.+..+|. +.+++++ ...+||+.+++...+.++ .++...++||+|+....+
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP 218 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC
Confidence 8888889999999999999999887777664 3333321 234788877765554444 344556679988642111
Q ss_pred CCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHH-hhcCcchhHHHHHHHHHHHHhhhhhhhHHHHh
Q psy13206 181 GRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMD-IISTPANRRSLLIVQIVAVADVISGMSAVLPY 259 (478)
Q Consensus 181 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (478)
+.+|.+ .+..+ + .+++.+++.+....+.+ .++++. ++........ .....+....|
T Consensus 219 -~~~~~~-------~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~-~~~~~~~~~~~ 275 (452)
T PRK11273 219 -PIEEYK-------NDYPD-------D---YNEKHEQELTAKQIFMQYVLPNKL----LWYIAIANVF-VYLLRYGILDW 275 (452)
T ss_pred -Chhhhh-------hcccc-------c---cccccCCCccHHHHHHHHHHcChH----HHHHHHHHHH-HHHHHHHHHHH
Confidence 111100 00000 0 00000000000001111 222221 1111111111 11222344557
Q ss_pred HHHHHHhcC-CCCCCchhhHHHHHHHHHHHhhhhhHhhhhc--CCchhHHH-hhHHHHHHHHHHHHHHhhcccccccccc
Q psy13206 260 ASSTFARTE-GSLITPDECTLLLGILVFLSTFPTAFLVDRT--GRRPLLLV-SCFGSGISQLIAGTYYLLSENYTVDLSK 335 (478)
Q Consensus 260 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~--GRr~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 335 (478)
.|.++.+.. .+.........+..++.+++.++.|+++||+ +||+.... ...+..+..+. +.. ... .
T Consensus 276 ~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~---~~~-~~~------~ 345 (452)
T PRK11273 276 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV---YWL-NPA------G 345 (452)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHH---HHH-hcc------c
Confidence 777776542 2222233334455667778899999999999 55543222 11111111111 111 100 0
Q ss_pred cchHHHHHHHHHHHHHHh-cccccchhhhcccCCccccchhhHHHHHHHHHHHHH-HHHHHHHHHHhcccchHHHHHHHH
Q psy13206 336 FNWIPLISITCFAVIYSI-GLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFL-VMKMYQVICDHYGVYLNFYIYSLG 413 (478)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~-g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i-~~~~~~~l~~~~g~~~~~~~~~~~ 413 (478)
..+...+ ..+...+.. +.......+..|.+|++.||++.|+.+..+.+++.+ +|.+.+.+.+..|....|++.++.
T Consensus 346 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~ 423 (452)
T PRK11273 346 NPTVDMA--CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 423 (452)
T ss_pred ChHHHHH--HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHH
Confidence 1111111 111222211 111223456779999999999999999999888765 689999999998876777666665
Q ss_pred HHHHHHHhh-eeecCCC
Q psy13206 414 CIICGVLVY-FIIPESK 429 (478)
Q Consensus 414 ~~l~~~~~~-~~~pEt~ 429 (478)
++++.+... ...+|+|
T Consensus 424 ~~~~~~~~~~~~~~~~~ 440 (452)
T PRK11273 424 SILAVILLIVVMIGEKR 440 (452)
T ss_pred HHHHHHHHHHHhccccc
Confidence 555544443 3344544
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=231.81 Aligned_cols=335 Identities=13% Similarity=0.070 Sum_probs=218.1
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
++++++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.+++++++|++.++++|+++|++.|..++.
T Consensus 32 ~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 111 (377)
T TIGR00890 32 YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGI 111 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhc-C---CccchhhHHHHHHHHHHHHHHh-hccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTV-G---PYVDYDTLAYVSLVIPVVFLMT-FIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~-g---~~~~~~~~~~~~~~~~~~~~~~-~~~~pESp~~l~~~~~~ 183 (478)
...++.|+.| ++|+++.+.......+|..++..+ + ...+||+.++...++.++..+. +.+++|.|+-- .
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 185 (377)
T TIGR00890 112 ALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-I---- 185 (377)
T ss_pred HHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc-c----
Confidence 9999999997 579999999888887776553322 2 2347888877666555554333 33444443200 0
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
+.+++ .++ .+.+.++.++++..+. ... ....... .......+.+.+
T Consensus 186 -----------~~~~~-~~~-----------------~~~~~~~~~~~~~~~~-~~~---~~~~~~~-~~~~~~~~~~~~ 231 (377)
T TIGR00890 186 -----------KTNIE-VSV-----------------KDYTVWEMLRTPQFWV-LYL---SFFLNAV-SGLLLIGLYKPY 231 (377)
T ss_pred -----------ccCcc-cch-----------------hhhhHHHHHcCccHHH-HHH---HHHHHhH-HHHHHHHHHHHH
Confidence 00000 000 0011223333322211 111 1111111 111122222322
Q ss_pred HHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHH
Q psy13206 264 FARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLIS 343 (478)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (478)
..+.+.+.........+..+..+++.++.++++||+|||+.+..+.+..+++.+.+... +. ...+.....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~ 301 (377)
T TIGR00890 232 GQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI----PM------LNDVLFLAT 301 (377)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc----cc------chhHHHHHH
Confidence 22222221122233445566777889999999999999998887776666654433211 10 001111111
Q ss_pred HHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy13206 344 ITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGC 414 (478)
Q Consensus 344 ~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~ 414 (478)
.....+..+ +..+..+.+.+|.+|++.|+++.|+.+....++..++|.+.+.+.+..|+...+.+.++..
T Consensus 302 ~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~ 371 (377)
T TIGR00890 302 VALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFA 371 (377)
T ss_pred HHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence 122222221 1223456788999999999999999999999999999999999998888766665555433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-27 Score=231.01 Aligned_cols=347 Identities=18% Similarity=0.217 Sum_probs=222.8
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+++.+++.++..+++++.|+++||+|||+.+..+.++..++.++.+++++++.+++.|++.|++.|...+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (398)
T TIGR00895 46 EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN 125 (398)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhh
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHH-HHHHhhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPV-VFLMTFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~-~~~~~~~~~pESp~~l~~~~~~ 183 (478)
...++.|++|+++|++..++......+|..+++.++ ...+|+..+++....+. ...+...++||+|++...+ +.
T Consensus 126 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 204 (398)
T TIGR00895 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RP 204 (398)
T ss_pred HHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CH
Confidence 999999999999999999999888888877776654 34577777666543333 3344556689999887665 44
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
+++.+..+........+.+. +.++.+ ++++..+......++.+..++..... .... ...........+.+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 276 (398)
T TIGR00895 205 ETVRRIVNAIAPQMQAEAQS---ALPEQK---ATQGTKRSVFKALFQGKTARITVLLW-LLYF-MLLVGVYFLTNWLPKL 276 (398)
T ss_pred HHHHHHHHHHHHhccccccc---cccccc---cccchhhHHHHHHhcchhHHHHHHHH-HHHH-HHHHHHHHHHHHHHHH
Confidence 55544444432211110000 000000 00000011112222222222222211 1111 1122233334445533
Q ss_pred HHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHH
Q psy13206 264 FARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLIS 343 (478)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (478)
....+.+............++.+++.++.++++||+|||+..... .+.++....+.. . .. ..+.....
T Consensus 277 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~--~-~~--------~~~~~~~~ 344 (398)
T TIGR00895 277 MVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLGAVFAVLVGS--T-LF--------SPTLLLLL 344 (398)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHH--H-hh--------CHHHHHHH
Confidence 333333322333444556677788999999999999999544433 333332222211 0 00 01112222
Q ss_pred HHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13206 344 ITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVI 397 (478)
Q Consensus 344 ~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l 397 (478)
...++++.+ +..+..+.+.+|.+|++.|+++.|+.+....++..++|.+.+.+
T Consensus 345 ~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 345 GAIAGFFVN-GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 222333322 22345677889999999999999999999999999998887653
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=229.22 Aligned_cols=353 Identities=15% Similarity=0.181 Sum_probs=223.0
Q ss_pred eeecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh
Q psy13206 6 MGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT 85 (478)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a 85 (478)
.+...+.+|.+.++ +++.++.+.|++.+++.+++++++++.|+++||+|||+++..+.+++.++++.++++
T Consensus 31 ~~~~~~~l~~~i~~---------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~ 101 (399)
T PRK05122 31 IGLPLAVLPGYVHD---------QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLA 101 (399)
T ss_pred HHHHHHHHHHHHHH---------hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHh
Confidence 34455666654321 467789999999999999999999999999999999999999999998877766554
Q ss_pred h--------hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHH
Q psy13206 86 K--------HVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLA 153 (478)
Q Consensus 86 ~--------~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~ 153 (478)
. +++.+++.|+++|++.+...+....++.|+.|+++|+++.++.+.....|.++++.++ ...+|+..+
T Consensus 102 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~ 181 (399)
T PRK05122 102 GLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLG 181 (399)
T ss_pred hhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHH
Confidence 2 5778999999999999999999999999999999999999988777777766655554 345788776
Q ss_pred HHHHHHHHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcc
Q psy13206 154 YVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPA 233 (478)
Q Consensus 154 ~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (478)
......+++..+.....||++. .++ ++. +.++.++ +
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~--~~~-------------------~~~~~~~--~ 217 (399)
T PRK05122 182 LLIMLLALLGLLLARPRPAVPP---------------------VKG--ERL-------------------PFRRVLG--R 217 (399)
T ss_pred HHHHHHHHHHHHHHhcCCCCCC---------------------CCc--cch-------------------hHHHHHH--H
Confidence 6655544443333322333221 000 000 0001110 0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHH
Q psy13206 234 NRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSG 313 (478)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~ 313 (478)
.+......... ..++.....+.+..+.+.+. ...........++.+++.++.+++.||+|||+.+..+..+.+
T Consensus 218 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 290 (399)
T PRK05122 218 VWPYGMGLALA-----SIGFGTIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEI 290 (399)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 01110000000 11112222333333333222 122233344566677888899999999999998877766655
Q ss_pred HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHH
Q psy13206 314 ISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKM 393 (478)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~ 393 (478)
+..+.+.. .+ ..+.......+++++++. ..+.......|.+|++.||++.|+.+....++..+++.+
T Consensus 291 ~~~~~~~~----~~--------~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 357 (399)
T PRK05122 291 LGLLLLWL----AP--------SPWMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPL 357 (399)
T ss_pred HHHHHHHH----hc--------cHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443321 11 011112222222222221 123333456688999999999999999999999999999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCCCC
Q psy13206 394 YQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKT 432 (478)
Q Consensus 394 ~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~ 432 (478)
.+.+.+..|....+++.+...++..+. ..++++.++++
T Consensus 358 ~g~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 395 (399)
T PRK05122 358 AGLVASWFGYPSIFLAAALAALLGLAL-TWLLYRRAPRA 395 (399)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHH-HHHhccccccc
Confidence 999998888666666655544444433 34455544443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=234.45 Aligned_cols=356 Identities=13% Similarity=0.113 Sum_probs=236.3
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF-----TKHVYVLYVVRFMQGLAMGI 104 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~-----a~~~~~l~~~R~l~G~~~g~ 104 (478)
.+.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++..++.++.++ .++++.+++.|+++|++.|.
T Consensus 47 ~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 126 (417)
T PRK10489 47 MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSL 126 (417)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999999999999988888777665543 46789999999999999998
Q ss_pred hhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHHHHHhhccccCChHHHHHc
Q psy13206 105 VFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMK 180 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~ 180 (478)
..+....++.|+.|+++|++..+..+....+|..+++.++.. .+|++.+++.....++..+....+||+|+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 203 (417)
T PRK10489 127 GVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--- 203 (417)
T ss_pred HHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC---
Confidence 889999999999999999999999888888888777776532 4677776665544444444455667754210
Q ss_pred CCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhH
Q psy13206 181 GRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYA 260 (478)
Q Consensus 181 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (478)
+ .+++ . .++. ...++..++++..+....... .. . .......+.
T Consensus 204 -~-------------~~~~----~---~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~--~---~~~~~~~~~ 246 (417)
T PRK10489 204 -Q-------------PREH----P---LRSL----------LAGFRFLLASPVVGGIALLGG-LL--T---MASAVRVLY 246 (417)
T ss_pred -c-------------cccc----c---hHHH----------HHHHHHHHcChHHHHHHHHHH-HH--H---HHHhHHHhh
Confidence 0 0000 0 0000 011222333222221111111 11 0 111223344
Q ss_pred HHHHHh-cCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchH
Q psy13206 261 SSTFAR-TEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWI 339 (478)
Q Consensus 261 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (478)
+.+..+ .+.+...........+++.+++.++.+++.||.++++.+..+.++.++..+.... .+ ..+.
T Consensus 247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~----~~--------~~~~ 314 (417)
T PRK10489 247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL----MP--------MWIL 314 (417)
T ss_pred HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc----cc--------hHHH
Confidence 444444 2222222233334456677788888999999987777776666555544333211 11 0111
Q ss_pred HHHHHHHHHHHHHhcc-cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q psy13206 340 PLISITCFAVIYSIGL-GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICG 418 (478)
Q Consensus 340 ~~~~~~~~~~~~~~g~-g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~ 418 (478)
..+....++ ++.+. .+....+..|..|++.||++.|+.+....++..+++.+.+.+.+..|....+++.+...++.+
T Consensus 315 ~~~~~~~~g--~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 392 (417)
T PRK10489 315 AVLCLALFG--YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIG 392 (417)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Confidence 112222222 22222 234456788999999999999999999999999999999999999888777777787777777
Q ss_pred HHhheeecCCCCCCHHHHHHH
Q psy13206 419 VLVYFIIPESKGKTFAQIQEE 439 (478)
Q Consensus 419 ~~~~~~~pEt~~~~~~~~~~~ 439 (478)
++.+..+||+|+++++|++++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 393 VLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HHHHHhcccccccccccccCC
Confidence 888888899998888776654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=224.75 Aligned_cols=332 Identities=15% Similarity=0.132 Sum_probs=214.7
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHH--------hhhHHHHHHHHHHHhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF--------TKHVYVLYVVRFMQGL 100 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~--------a~~~~~l~~~R~l~G~ 100 (478)
++++|+.+.|++.+++.+++.+++++.|+++||+|||+.+..+.+...++.+.... .+|++.++++|+++|+
T Consensus 45 ~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 124 (392)
T PRK12382 45 DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF 124 (392)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999998887776543322 3588999999999999
Q ss_pred hhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHHhhccccCChHH
Q psy13206 101 AMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLMTFIWMPESPYF 176 (478)
Q Consensus 101 ~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~ 176 (478)
+.+...+....++.|+.|+++|+++.++.+.....|..+++.++. ..+|+..+......+++..+.....||.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~- 203 (392)
T PRK12382 125 GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPA- 203 (392)
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCC-
Confidence 999999999999999999999999999988887777777666653 457776655544444433333233343321
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHH
Q psy13206 177 LIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAV 256 (478)
Q Consensus 177 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (478)
+++ .+ .+.++..+ ..++........ ..+....
T Consensus 204 --------------------~~~-~~--------------------~~~~~~~~--~~~~~~~~~~l~-----~~~~~~~ 235 (392)
T PRK12382 204 --------------------HAG-ER--------------------PSLWSVVG--LIWKPGLGLALQ-----GVGFAVI 235 (392)
T ss_pred --------------------Ccc-cC--------------------chHHHHHH--HHHHhHHHHHHH-----HHHHhHH
Confidence 000 00 00001000 001110111111 1112223
Q ss_pred HHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccccccc
Q psy13206 257 LPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKF 336 (478)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 336 (478)
..+.+..+.+.+.. .........++..+++.++.+++.||+|||+.+..+..+.++..+.+.. .+ .
T Consensus 236 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~----~~--------~ 301 (392)
T PRK12382 236 GTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL----AP--------T 301 (392)
T ss_pred HHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH----cc--------c
Confidence 33444444433221 2222233345556778888999999999999888776666655443221 11 0
Q ss_pred chHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy13206 337 NWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCII 416 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l 416 (478)
.+.......+.++.++. ..+.......|.+|++.||++.|+.+....++..+++.+.+.+.++.|+...+.+.++..++
T Consensus 302 ~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~ 380 (392)
T PRK12382 302 AWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVL 380 (392)
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 11111222222222221 22344456678899999999999999999999999999999999998877777776665555
Q ss_pred HHHHhhee
Q psy13206 417 CGVLVYFI 424 (478)
Q Consensus 417 ~~~~~~~~ 424 (478)
..++.+++
T Consensus 381 ~~~~~~~~ 388 (392)
T PRK12382 381 GIIVTILS 388 (392)
T ss_pred HHHHHHhh
Confidence 55544433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-27 Score=235.31 Aligned_cols=346 Identities=12% Similarity=0.112 Sum_probs=201.6
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++++..+.+++.+++++++.+++++.|+++||+|||+++..+.++++++.+++++++|++.++++|+++|++.+... .
T Consensus 65 ~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~ 143 (476)
T PLN00028 65 NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-S 143 (476)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-H
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999988654 4
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC-------------ccchhhHHHHHHHHHHHHHHhhccc-cCCh
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP-------------YVDYDTLAYVSLVIPVVFLMTFIWM-PESP 174 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~~~~~-pESp 174 (478)
...++.|++|+++||++.++......+|..++..+.+ ..+||+.+++..++.++..+...++ ++.|
T Consensus 144 ~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p 223 (476)
T PLN00028 144 CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLP 223 (476)
T ss_pred HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 5668899999999999999887655555444332221 2479988887665554443333333 3333
Q ss_pred HHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhh
Q psy13206 175 YFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMS 254 (478)
Q Consensus 175 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (478)
+ ++.++.+ +..+. ++.+....+++.+++++.+ ... ..... ......
T Consensus 224 ~-----~~~~~~~-------~~~~~-----------------~~~~~~~~~~~~~~~~~~~---~~~-~~~~~-~~~~~~ 269 (476)
T PLN00028 224 D-----GNYRELK-------KSGTM-----------------PKDSFSKVLRYGVTNYRTW---ILA-LTYGY-SFGVEL 269 (476)
T ss_pred C-----CchhhHH-------hcCcc-----------------ccccHHHHHHHHHcCchhH---HHH-HHHHH-HHHHHH
Confidence 1 1100000 00000 0000001122333322211 111 11111 111122
Q ss_pred HHHHhHHHHHHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCch-------hHHHhhHHHHHHHHHHHHHHhhc
Q psy13206 255 AVLPYASSTFART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRP-------LLLVSCFGSGISQLIAGTYYLLS 326 (478)
Q Consensus 255 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~-------~l~~~~~~~~i~~~~~~~~~~~~ 326 (478)
.+..+.+.++.+. +.+.........+..++..++.+++|+++||++||+ ......++.++..+.+ . ..
T Consensus 270 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~---~-~~ 345 (476)
T PLN00028 270 TMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWL---G-RA 345 (476)
T ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHh---c-cc
Confidence 2334455554433 323223344455567778899999999999998762 1111222212211111 0 00
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q psy13206 327 ENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLN 406 (478)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~ 406 (478)
+ ..+.....+..+.++...+. +..+.+.+|+. ++.||++.|+.+..+.+|+.+.+.+.+ .....+....
T Consensus 346 ~--------~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~ 414 (476)
T PLN00028 346 N--------SLGAAIVVMILFSIFVQAAC-GATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETG 414 (476)
T ss_pred c--------hHHHHHHHHHHHHHHHHHhh-hhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhH
Confidence 0 01111222222222222222 23455667765 478999999999888888888887654 1112223455
Q ss_pred HHHHHHHHHHHHHHhheee
Q psy13206 407 FYIYSLGCIICGVLVYFII 425 (478)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~ 425 (478)
|++.++..++++++. +++
T Consensus 415 f~~~~~~~~i~~~~~-~~~ 432 (476)
T PLN00028 415 ISLMGVMIIACTLPV-AFI 432 (476)
T ss_pred HHHHHHHHHHHHHHH-Hhe
Confidence 666655555544443 444
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-26 Score=222.77 Aligned_cols=325 Identities=18% Similarity=0.186 Sum_probs=206.0
Q ss_pred cCcchhhHHHH-----HHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHH--------HHHHHHHHH
Q psy13206 32 MTSAESSWVVS-----IIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVY--------VLYVVRFMQ 98 (478)
Q Consensus 32 ~~~~~~~~~~s-----~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~--------~l~~~R~l~ 98 (478)
.++.+.+++.+ +.+++..+++++.|+++||+|||+++..+.++..+++++++++++++ .++++|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 44555555443 34455568999999999999999999999999999999999999875 589999999
Q ss_pred hhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC------------ccchhhHHHHHHHHHHHHHHh
Q psy13206 99 GLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP------------YVDYDTLAYVSLVIPVVFLMT 166 (478)
Q Consensus 99 G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~------------~~~~~~~~~~~~~~~~~~~~~ 166 (478)
|++.|...+....++.|+.|+++|++..+..+.+..+|.++++.++. ..+||..+.+.....++..+.
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888887765432 346887776655554444444
Q ss_pred hccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHH
Q psy13206 167 FIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAV 246 (478)
Q Consensus 167 ~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (478)
...+||+|++...+++ +++.+.+.++.++++. +.........+
T Consensus 187 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 229 (394)
T TIGR00883 187 RRNLEETPVFEKAQEK-----------------------------------HKKKRGPIRETLTKHR--KPFLLGLGLVI 229 (394)
T ss_pred HHhcCCChhHHHHHhc-----------------------------------cccccCCHHHHHHhch--HHHHHHHHHHH
Confidence 4556777753221100 0000112233333221 12222222221
Q ss_pred HhhhhhhhHHHHhHHHHHHhcC-CCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhh
Q psy13206 247 ADVISGMSAVLPYASSTFARTE-GSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLL 325 (478)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~ 325 (478)
. ..........+.+.++.+.. .+............+...++.++.++++||+|||+.+.....+..+..+.... ...
T Consensus 230 ~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~ 307 (394)
T TIGR00883 230 A-TTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM-ALL 307 (394)
T ss_pred H-HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-HHh
Confidence 1 12223334455565554332 22222233344456677788889999999999999776544433332211111 110
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHH-HHHHHHHHHHHHHHHHHHHhccc
Q psy13206 326 SENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTT-ITLTVISFLVMKMYQVICDHYGV 403 (478)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~-~~~~lg~~i~~~~~~~l~~~~g~ 403 (478)
.. ...+..........+..+. ..+....+.+|.+|++.|+++.++.. ....+++.++|.+.+.+.++.|.
T Consensus 308 ~~-------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~ 378 (394)
T TIGR00883 308 DS-------GSFTLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGD 378 (394)
T ss_pred cC-------CchHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCc
Confidence 00 0112222222222222222 23456678899999999999999864 44567888999999999998873
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=230.71 Aligned_cols=367 Identities=15% Similarity=0.183 Sum_probs=226.9
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh----hhHHHHHHHHHHHhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT----KHVYVLYVVRFMQGLAMGIV 105 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a----~~~~~l~~~R~l~G~~~g~~ 105 (478)
.++++.+.+++.+++.++..+++++.|+++||+|||+.+..+.++..+++++.++. ++++.+.+.|++.|++.|..
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~ 135 (438)
T TIGR00712 56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG 135 (438)
T ss_pred cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence 37889999999999999999999999999999999999999999999998887764 46788899999999999999
Q ss_pred hhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC-----CccchhhHHHHHHHHHHHH-HHhhccccCChHHHHH
Q psy13206 106 FTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG-----PYVDYDTLAYVSLVIPVVF-LMTFIWMPESPYFLIM 179 (478)
Q Consensus 106 ~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g-----~~~~~~~~~~~~~~~~~~~-~~~~~~~pESp~~l~~ 179 (478)
++....++.|++|+++||++.++.+....+|..+++.+. ...+||..++....+.++. ++...++||+|+....
T Consensus 136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~ 215 (438)
T TIGR00712 136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL 215 (438)
T ss_pred hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence 999999999999999999999998888777766554332 2357888877766555443 3445567888864210
Q ss_pred cCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhH-HHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHH
Q psy13206 180 KGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDF-MDIISTPANRRSLLIVQIVAVADVISGMSAVLP 258 (478)
Q Consensus 180 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (478)
+ +.++ .+++...... + + .+++.+.+..+ ...++++..+. ......+ .....+.+..
T Consensus 216 ~-~~~~-------~~~~~~~~~~---~---~----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~ 272 (438)
T TIGR00712 216 P-PIEE-------YRNDYPDDYN---E---K----AEQELTAKEIFMQYVLPNKLLWY----IAIANVF-VYLLRYGVLD 272 (438)
T ss_pred C-Cchh-------cccccccccc---c---c----cccccchHHHHHHHHccCchHHH----HHHHHHH-HHHHHHHHHH
Confidence 0 0000 0000000000 0 0 00000000111 11233222211 1111111 1122334455
Q ss_pred hHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccc
Q psy13206 259 YASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFN 337 (478)
Q Consensus 259 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 337 (478)
|.|.++.+..+ +............+..+++.++.++++||++|++....+........+....+. ... . ...
T Consensus 273 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-----~~~ 345 (438)
T TIGR00712 273 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-MNP-A-----GNP 345 (438)
T ss_pred hHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-hcC-C-----Cch
Confidence 67766665422 323334445556677888999999999999654322223222221111111111 111 0 011
Q ss_pred hHHHHHHHHHHHHHHhccccc--chhhhcccCCccccchhhHHHHHHHHHHH-HHHHHHHHHHHHhcccchHHHHHHHHH
Q psy13206 338 WIPLISITCFAVIYSIGLGPL--VPTLQGEFFPSNTRGLAGGVTTITLTVIS-FLVMKMYQVICDHYGVYLNFYIYSLGC 414 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~g~~--~~~~~~El~p~~~Rg~~~g~~~~~~~lg~-~i~~~~~~~l~~~~g~~~~~~~~~~~~ 414 (478)
+.... ..+...+.. .++. ......|.+|++.||++.|+.+..+.+++ .++|.+.+.+.++.|....+++..+..
T Consensus 346 ~~~~~--~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~ 422 (438)
T TIGR00712 346 LVDMI--CMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS 422 (438)
T ss_pred HHHHH--HHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHH
Confidence 11111 111222211 2222 23456799999999999999999988875 578999999999888666676666666
Q ss_pred HHHHHHhheeecCCC
Q psy13206 415 IICGVLVYFIIPESK 429 (478)
Q Consensus 415 ~l~~~~~~~~~pEt~ 429 (478)
+++.++.+++.||.|
T Consensus 423 ~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 423 ILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHHhhcc
Confidence 677777777778765
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=230.63 Aligned_cols=358 Identities=15% Similarity=0.157 Sum_probs=220.3
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT--KHVYVLYVVRFMQGLAMGIVF 106 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a--~~~~~l~~~R~l~G~~~g~~~ 106 (478)
++++++.+.|++.+.+++++++++++.|+++||+|||+++..+.++++++++++.++ .+++.+++.|+++|++.|...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 678899999999999999999999999999999999999999999999998887554 568899999999999999999
Q ss_pred hhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----c-cchhhHHHHHHHHHHHHHHh-hccccCChHHHHHc
Q psy13206 107 TVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----Y-VDYDTLAYVSLVIPVVFLMT-FIWMPESPYFLIMK 180 (478)
Q Consensus 107 ~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~-~~~~~~~~~~~~~~~~~~~~-~~~~pESp~~l~~~ 180 (478)
+....++.|++|+++||++.++...+..+|..+++.++. . .+||..+++..++.++..+. +...+|+|+.....
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~ 229 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI 229 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC
Confidence 999999999999999999999999888888877766542 3 38888887766665554433 33457777421000
Q ss_pred CCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHH---hhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHH
Q psy13206 181 GRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVER---EMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVL 257 (478)
Q Consensus 181 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (478)
+.+| .+..++..++ +.+.+.++++.++++. ++.. .........+.+.+.
T Consensus 230 -~~~~----------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~ 281 (465)
T TIGR00894 230 -SKFE----------------------KKYINSSLQGQKGSTRQSLPIKAIPKSLP----VWAI-WFAIFGHFWLYTILP 281 (465)
T ss_pred -CHHH----------------------HHHHHhhcccccCCCCCCCCHHHHhcCHH----HHHH-HHHHHHHHHHHHHHH
Confidence 0000 0000000000 0111223555554332 2221 222223334445566
Q ss_pred HhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHH---hhHHHHHHHHHHHHHHhhcccccccc
Q psy13206 258 PYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLV---SCFGSGISQLIAGTYYLLSENYTVDL 333 (478)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~---~~~~~~i~~~~~~~~~~~~~~~~~~~ 333 (478)
.|.|.++.+..+ +.........+..++.+++.+++|+++||+++|+.... ..+..++............. ..
T Consensus 282 ~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 357 (465)
T TIGR00894 282 TYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP-YL--- 357 (465)
T ss_pred HHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-Hc---
Confidence 677877765432 32233344455667778889999999999875532110 01111111111111000000 00
Q ss_pred cccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc--c-cchHHHHH
Q psy13206 334 SKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHY--G-VYLNFYIY 410 (478)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~--g-~~~~~~~~ 410 (478)
....+.....+.....+. .+..+.......|..|. .+|++.|+.+..+.+++++.|.+.+.+.+.. + +...|++.
T Consensus 358 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~ 435 (465)
T TIGR00894 358 SAAFYLTIIILTLANAVS-SGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIM 435 (465)
T ss_pred CCchHHHHHHHHHHHHHh-hhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHH
Confidence 001111111122212111 11223334455677665 8999999999999999999999999877643 2 33445555
Q ss_pred HHHHHHHHHH
Q psy13206 411 SLGCIICGVL 420 (478)
Q Consensus 411 ~~~~~l~~~~ 420 (478)
++..++..++
T Consensus 436 ~~~~~i~~i~ 445 (465)
T TIGR00894 436 AFVNILCVIF 445 (465)
T ss_pred HHHHHHHHHH
Confidence 5444444443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=219.02 Aligned_cols=336 Identities=12% Similarity=0.113 Sum_probs=212.4
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT-----KHVYVLYVVRFMQGLAMG 103 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a-----~~~~~l~~~R~l~G~~~g 103 (478)
++++|..|.+++.+++.+++.+++++.|++.||+|.|+++.++.+++.+.+++.+++ +|++.+++.|++.|++ |
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g 142 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G 142 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence 688999999999999999999999999999999999999999999999999999987 8999999999999998 8
Q ss_pred hhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----------------------cchhhHHHHHHHHHH
Q psy13206 104 IVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----------------------VDYDTLAYVSLVIPV 161 (478)
Q Consensus 104 ~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----------------------~~~~~~~~~~~~~~~ 161 (478)
+.++.....+++|+|+++||++.++.....++|..+++.+++. .+|+...++-..+.+
T Consensus 143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~i 222 (462)
T PRK15034 143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLA 222 (462)
T ss_pred HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999976666776544443321 113333332222222
Q ss_pred HHHHh-hccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHH
Q psy13206 162 VFLMT-FIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLI 240 (478)
Q Consensus 162 ~~~~~-~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (478)
+..+. ++.+++-|. . +....+..+.+++++.|. .
T Consensus 223 v~~i~~~~~~~~~~~-----------------------~-------------------~~~~~~~~~vlk~~~~Wl---l 257 (462)
T PRK15034 223 IATIAAWSGMNDIAS-----------------------S-------------------RASIADQLPVLQRLHLWL---L 257 (462)
T ss_pred HHHHHHHHhCCCccc-----------------------c-------------------ccCHHHHHHHhCCCchhH---H
Confidence 22222 222332220 0 000112233444443322 1
Q ss_pred HHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHH
Q psy13206 241 VQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAG 320 (478)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~ 320 (478)
..+. .+.+.++..+..+.|.+..+.. +.........+..+...+..+++|+++||+|||+++..+.+...++...+.
T Consensus 258 slly--~~tFG~fvg~s~~lp~~~~~~~-~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~ 334 (462)
T PRK15034 258 SLLY--LATFGSFIGFSAGFAMLAKTQF-PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLF 334 (462)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 1111 1123333333334444443322 112222223334556677888999999999999999888776666543322
Q ss_pred HHHhhcccccccccccchHHHHHHHHHH--HHHHhcccccchhhhcccCCc---------------------cccchhhH
Q psy13206 321 TYYLLSENYTVDLSKFNWIPLISITCFA--VIYSIGLGPLVPTLQGEFFPS---------------------NTRGLAGG 377 (478)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~g~~~~~~~~El~p~---------------------~~Rg~~~g 377 (478)
. ..... . .. ........++. +..++|.|+ .+-+++..||. +.-|...|
T Consensus 335 l--~lp~~----~-~~-~~~~~~~~~~~l~~~~G~gngs-vfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G 405 (462)
T PRK15034 335 L--TLPGT----G-SG-NFIAFYAVFMGLFLTAGLGSGS-TFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALG 405 (462)
T ss_pred H--Hhccc----c-cc-HHHHHHHHHHHHHHHhcccchH-HHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHH
Confidence 1 11110 0 00 11122222223 333444444 33456666764 14578889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHhh
Q psy13206 378 VTTITLTVISFLVMKMYQVICDHYGVYL-NFYIYSLGCIICGVLVY 422 (478)
Q Consensus 378 ~~~~~~~lg~~i~~~~~~~l~~~~g~~~-~~~~~~~~~~l~~~~~~ 422 (478)
+..+.+.+|+++.|.+++...+..|.+. .++.+.+..+++..+.|
T Consensus 406 ~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 406 FISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred HHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988887654 34455555555555444
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-25 Score=217.08 Aligned_cols=343 Identities=15% Similarity=0.140 Sum_probs=220.6
Q ss_pred cceeecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHH
Q psy13206 4 TSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVI 83 (478)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~ 83 (478)
+.++.-++.+|.+.+ +++.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++..++.++++
T Consensus 20 ~~~~~~~~~lp~~~~----------~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~ 89 (381)
T PRK03633 20 LAIAVLNTLVPLWLA----------QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLG 89 (381)
T ss_pred HhhhhHHHHHHHHHH----------HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666676664 3677899999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCccch---hhHHHHHHH-H
Q psy13206 84 FTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVDY---DTLAYVSLV-I 159 (478)
Q Consensus 84 ~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~~~---~~~~~~~~~-~ 159 (478)
+++|++.++++|+++|++.|...+.....+.+..|+++|++..+......++|..+++.++..... +...+.... .
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 169 (381)
T PRK03633 90 LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVL 169 (381)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 999999999999999999999999888888899999999999999998888888888877654321 122222111 1
Q ss_pred HHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHH
Q psy13206 160 PVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLL 239 (478)
Q Consensus 160 ~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (478)
..+..+.+...+|++ .++ +...+..+.++++..+...
T Consensus 170 ~~~~~~~~~~~~~~~----------------------~~~--------------------~~~~~~~~~~~~~~~~~~~- 206 (381)
T PRK03633 170 AAILPLLFTRILNQQ----------------------AEN--------------------HDSTSIWPMLKLRQARLGV- 206 (381)
T ss_pred HHHHHHHHhcccCCC----------------------CCC--------------------CCCCCHHHHHHhcchHHHH-
Confidence 111111111112110 000 0001122333333322111
Q ss_pred HHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHH
Q psy13206 240 IVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIA 319 (478)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~ 319 (478)
.. .+... ........+.+.+..+.+.+.........+..+..+++.++.+++.||+|||+.+..+....+++.+..
T Consensus 207 ~~-~~~~~---~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 282 (381)
T PRK03633 207 NG-CIISG---IVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM 282 (381)
T ss_pred HH-HHHHH---HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 11 11111 111222234454444433221222223334456667888899999999999998877766655543322
Q ss_pred HHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13206 320 GTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD 399 (478)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~ 399 (478)
. .. .........+... ..+..|....+..|..|++.++...+..+....+|..++|.+.+.+.+
T Consensus 283 ~-----~~----------~~~~~~~~l~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~ 346 (381)
T PRK03633 283 L-----SQ----------AAMAPALFILGAA-GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ 346 (381)
T ss_pred h-----hh----------HHHHHHHHHHHHH-HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 00 0011111112211 122345555667798998888888888888888999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHH
Q psy13206 400 HYGVYLNFYIYSLGCIICGV 419 (478)
Q Consensus 400 ~~g~~~~~~~~~~~~~l~~~ 419 (478)
+.+....|.+.+...++..+
T Consensus 347 ~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 347 NYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HhCccHHHHHHHHHHHHHHH
Confidence 88876666666555544433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=226.16 Aligned_cols=345 Identities=15% Similarity=0.127 Sum_probs=213.4
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+++.+++.++..+++++.|+++||+|||+.+..+.++..++.++.+++++++.+++.|++.|++.|...+.
T Consensus 24 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 103 (379)
T TIGR00881 24 EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPP 103 (379)
T ss_pred HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHh-hcC----CccchhhHHHHHHHHHHH-HHHhhccccCChHHHHHcCC
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEY-TVG----PYVDYDTLAYVSLVIPVV-FLMTFIWMPESPYFLIMKGR 182 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~-~~g----~~~~~~~~~~~~~~~~~~-~~~~~~~~pESp~~l~~~~~ 182 (478)
...++.|+.|+++|++..++.+....+|..+++ .++ ...+|++.+++...+.++ ..+...+.||+|+....+.+
T Consensus 104 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (379)
T TIGR00881 104 CGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPA 183 (379)
T ss_pred hHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCcc
Confidence 999999999999999999988888888877766 232 345788877665554444 34445567887642110000
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHh-hccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHH
Q psy13206 183 DVDARKSLFWLRGGRESSKDKINLELSNIKQDVERE-MKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYAS 261 (478)
Q Consensus 183 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (478)
++ .+.++.+ +.++..+++ +..+...++.++++..+. .... .............+.+
T Consensus 184 -~~----------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~ 240 (379)
T TIGR00881 184 -EE----------MPNEEPD-------GDAEKKEEELTKKQIFLQYVLLNKVLWY----ISLG-YVFVYVVRTGILDWSP 240 (379)
T ss_pred -cc----------Ccccccc-------cccccccccccchHHHHHHHHhcchHHH----HHHH-HHHHHHHHHHHHHHHH
Confidence 00 0000000 000000000 001112233333322211 1111 1111122233344555
Q ss_pred HHHHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHH
Q psy13206 262 STFART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIP 340 (478)
Q Consensus 262 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (478)
..+.+. +.+............+..+++.++.+++.||..+|+...............+..... .. ....+..
T Consensus 241 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~ 313 (379)
T TIGR00881 241 LYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL-NP------AANPLMD 313 (379)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc-Cc------chhHHHH
Confidence 555443 222222333444556677788999999999864333222221211111111111111 00 0001111
Q ss_pred HHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy13206 341 LISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVY 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~ 404 (478)
......++. ...+..+..+.+.+|.+|++.||++.|+.+....+++.+++.+.+.+.++.|+.
T Consensus 314 ~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 314 LICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred HHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 111111111 122233344567899999999999999999999999999999999999887754
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=216.80 Aligned_cols=323 Identities=16% Similarity=0.146 Sum_probs=205.7
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.+..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.|...+.
T Consensus 32 ~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~ 111 (382)
T PRK10091 32 DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGV 111 (382)
T ss_pred HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHHH-HhhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~~-~~~~~~pESp~~l~~~~~~ 183 (478)
...++.|+.|+++|++..+....+..+|..+++.++ ...+||+.++....+.++.. ..+.++||.++ +.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~-- 185 (382)
T PRK10091 112 GAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EA-- 185 (382)
T ss_pred HHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----cc--
Confidence 999999999999999998888877777766655543 34589988877666554433 33445777541 00
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
+.+ .. + . .+.++++..+ ... ..... ...+......|.+..
T Consensus 186 -------------~~~----~~-------~----------~-~~~~~~~~~~---~~~-~~~~~-~~~~~~~~~~~~~~~ 225 (382)
T PRK10091 186 -------------KGG----LR-------E----------Q-FHFLRSPAPW---LIF-AATMF-GNAGVFAWFSYIKPY 225 (382)
T ss_pred -------------ccC----HH-------H----------H-HHHhcChHHH---HHH-HHHHH-HHHHHHHHHHHHHHH
Confidence 000 00 0 0 0111211111 111 11111 111222223333434
Q ss_pred HHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHH
Q psy13206 264 FART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLI 342 (478)
Q Consensus 264 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (478)
+.+. +.+...........+++.+++.++.+++.||+|||+.+..+..+.++..+.+... .+ ..+...+
T Consensus 226 ~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~---~~--------~~~~~~~ 294 (382)
T PRK10091 226 MMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF---GG--------MKTASLI 294 (382)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH---Hh--------hHHHHHH
Confidence 4332 2222223333445566778899999999999999998877766666554332211 00 0111111
Q ss_pred HHHHHHHHHHhcccc-cchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc-hHHHHHH
Q psy13206 343 SITCFAVIYSIGLGP-LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVY-LNFYIYS 411 (478)
Q Consensus 343 ~~~~~~~~~~~g~g~-~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~-~~~~~~~ 411 (478)
........+. +..+ .......+..|.+.++.+ ..+....+|..++|.+.+.+.+..+.+ ..+.+.+
T Consensus 295 ~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~ 362 (382)
T PRK10091 295 FAFICCAGLF-ALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAA 362 (382)
T ss_pred HHHHHHHHHH-hhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHH
Confidence 1112222111 1122 222344555555555544 446677899999999999998865433 4444333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=212.79 Aligned_cols=331 Identities=12% Similarity=0.163 Sum_probs=208.6
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.++..+++.++..+++++.|+++||+|||++++.+.++.+++++++++++|++.+++.|+++|++.|...+.
T Consensus 49 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 128 (394)
T PRK10213 49 DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAM 128 (394)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHHh-hccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLMT-FIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~-~~~~pESp~~l~~~~~~ 183 (478)
...++.|++|+++|+++.+......++|.++++.++. ..+||+.+++...+.++..+. ...+||+|+. +
T Consensus 129 ~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~- 202 (394)
T PRK10213 129 SASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P- 202 (394)
T ss_pred HHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c-
Confidence 9999999999999999999988888888777666654 468998887765554443322 2345765410 0
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhH-HH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYA-SS 262 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 262 (478)
++. ..+..+.+++|..+..+.. ......+......+. +.
T Consensus 203 -------------~~~----------------------~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~ 242 (394)
T PRK10213 203 -------------SHQ----------------------KQNTFRLLQRPGVMAGMIA-----IFMSFAGQFAFFTYIRPV 242 (394)
T ss_pred -------------ccc----------------------hhHHHHHhcCHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 000 0011223332222211111 111112222222333 32
Q ss_pred HHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHH
Q psy13206 263 TFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLI 342 (478)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (478)
+..+.+.+...........+++.+++.++.+++.||.+| +.+..+..+.....+.+... .. ..+....
T Consensus 243 ~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~---~~--------~~~~~~~ 310 (394)
T PRK10213 243 YMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLW---GS--------DKIVATG 310 (394)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHH---hh--------hHHHHHH
Confidence 223223222222333344556778888888999999544 44333333322222221111 00 1122222
Q ss_pred HHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q psy13206 343 SITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGV 419 (478)
Q Consensus 343 ~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~ 419 (478)
....+++.++.. .+....+..+..| +.+++..++......++..+++.+.+.+.+..|....+...+....+.++
T Consensus 311 ~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 311 VAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 222233333221 2223334556666 44667777777788899999999999999988865555444433334433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=208.85 Aligned_cols=361 Identities=17% Similarity=0.165 Sum_probs=238.7
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+..+|..|.|++.|.+++.|.++.++.|.++||.+.|..+-++.++.++..++.+++++++.+.++-++.|+-.|.-.|.
T Consensus 58 ~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp 137 (448)
T COG2271 58 DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPP 137 (448)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcH
Confidence 45589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC------CccchhhHHHHHHHHHHHHH-HhhccccCChHHHHHcC
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG------PYVDYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIMKG 181 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g------~~~~~~~~~~~~~~~~~~~~-~~~~~~pESp~~l~~~~ 181 (478)
+...++.|+|+++||+..++++.+.++|-.+.+.+. ...+||..++...++.+++. +.+..+.++|+- .|
T Consensus 138 ~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs---~G 214 (448)
T COG2271 138 CARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS---EG 214 (448)
T ss_pred HHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc---cC
Confidence 999999999999999999999999998865544433 23478888887776665544 344445666631 11
Q ss_pred CHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHH
Q psy13206 182 RDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYAS 261 (478)
Q Consensus 182 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (478)
- ++ -++..+++.+.. +++++ +...+.++.+.+-..+.+.+..+.+........=+.+..|.|
T Consensus 215 L--------------P~-ie~~~~d~~e~~--~~~~~-~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p 276 (448)
T COG2271 215 L--------------PP-IEEYRGDPLEIY--EEEKE-NEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGP 276 (448)
T ss_pred C--------------CC-HHHhhcCchhhh--hhhcc-CCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 0 00 000011111111 01111 111223333222222222222222221111122245667778
Q ss_pred HHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhc--CCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccch
Q psy13206 262 STFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRT--GRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNW 338 (478)
Q Consensus 262 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~--GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 338 (478)
.++.+..+ +..++.....++=.+.++|+++.|+++||+ |||.+..+.+.+... +++..+..... ...+
T Consensus 277 ~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~--~~~~~~w~~~~-------~~~~ 347 (448)
T COG2271 277 LYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT--ASLVLYWLAPN-------GSYL 347 (448)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH--HHHHHHHcCCC-------ccHH
Confidence 77766544 444555566667778899999999999995 888665433222222 22222322111 1112
Q ss_pred HHHHHHHHHHHHHHhcccc--cchhhhcccCCccccchhhHHHHHHHHH-HHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy13206 339 IPLISITCFAVIYSIGLGP--LVPTLQGEFFPSNTRGLAGGVTTITLTV-ISFLVMKMYQVICDHYGVYLNFYIYSLGCI 415 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~g~g~--~~~~~~~El~p~~~Rg~~~g~~~~~~~l-g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~ 415 (478)
+..+.+.+ .++. -.|| ++.....|..|++--|++.|+...++.+ |+.......+++.+.+||.+.|+++.+.++
T Consensus 348 l~~~~l~~--iGf~-IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~ 424 (448)
T COG2271 348 LDAILLFI--IGFL-IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAAL 424 (448)
T ss_pred HHHHHHHH--HHHH-HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHH
Confidence 22222222 2221 1244 3445678999999999999999999999 778888888888888899888888877666
Q ss_pred HHHHHhh
Q psy13206 416 ICGVLVY 422 (478)
Q Consensus 416 l~~~~~~ 422 (478)
++.++..
T Consensus 425 l~~lll~ 431 (448)
T COG2271 425 LAILLLL 431 (448)
T ss_pred HHHHHHH
Confidence 6655543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=210.02 Aligned_cols=314 Identities=22% Similarity=0.303 Sum_probs=227.4
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVA 109 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~ 109 (478)
.+.++.+.+++.+.+.++..+++++.|+++||+|||+.+.++.++..++.++..++++++.++++|++.|++.+...+..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 108 (352)
T cd06174 29 LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAA 108 (352)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHHH
Q psy13206 110 PMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVD 185 (478)
Q Consensus 110 ~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~ 185 (478)
..++.|+.|+++|++..+.......+|..+++.++.. .+|+..++......++..+...+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 174 (352)
T cd06174 109 AALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------- 174 (352)
T ss_pred HHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 9999999999999999999998888888877766543 3577666655544444333322211
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHH
Q psy13206 186 ARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFA 265 (478)
Q Consensus 186 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (478)
+........ .............+.+....
T Consensus 175 --------------------------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 203 (352)
T cd06174 175 --------------------------------------------------RLLLLLALA-FFLLSFGYYGLLTYLPLYLQ 203 (352)
T ss_pred --------------------------------------------------HHHHHHHHH-HHHHHhHHHHHHHHHHHHHH
Confidence 011111111 11112223344445555554
Q ss_pred hc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCch-hHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHH
Q psy13206 266 RT-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRP-LLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLIS 343 (478)
Q Consensus 266 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (478)
+. +.+............+...++.++.+++.||+|||+ .+..+..+..++.+..... + ..+.....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~--------~~~~~~~~ 271 (352)
T cd06174 204 EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA----P--------SLALLLVA 271 (352)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh----c--------cHHHHHHH
Confidence 43 222223334455567778889999999999999999 8887777777665544321 0 01111222
Q ss_pred HHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Q psy13206 344 ITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLV 421 (478)
Q Consensus 344 ~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~ 421 (478)
........ ....+....+..|..|++.|++..|+.+...+++..+++.+.+.+.+..+....+.+.++..++..++.
T Consensus 272 ~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 272 LLLLGFGL-GFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHH-hccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 22222222 233456778889999999999999999999999999999999999888887777777776655555543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=215.71 Aligned_cols=324 Identities=14% Similarity=0.094 Sum_probs=212.0
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK-----HVYVLYVVRFMQGLAMGI 104 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~-----~~~~l~~~R~l~G~~~g~ 104 (478)
.+.++.+.+++.+++.++.++++++.|+++||+|||+++..+.++..++.++..+++ |++.++++|+++|++.+.
T Consensus 29 ~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 108 (365)
T TIGR00900 29 GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAF 108 (365)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999999999999888888 999999999999999999
Q ss_pred hhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHHhhc--cccCChHHHH
Q psy13206 105 VFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLMTFI--WMPESPYFLI 178 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~--~~pESp~~l~ 178 (478)
..+...+++.|+.|+++|++..+..+....+|.++++.++. ..+|++.++......++..+... ..||.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 185 (365)
T TIGR00900 109 FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA--- 185 (365)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC---
Confidence 99999999999999999999999999999888888777654 35788777655444333332222 2333321
Q ss_pred HcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHH-
Q psy13206 179 MKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVL- 257 (478)
Q Consensus 179 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 257 (478)
+ + +++.+ +...++ ....+++.++++..+.......... . ......
T Consensus 186 ---~-~------------~~~~~---~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~ 231 (365)
T TIGR00900 186 ---S-E------------IQALS---NAVLRD----------TREGIKFVLKNPLLRTLLLLALLFN----L-VFAPAIV 231 (365)
T ss_pred ---c-c------------ccccc---hhHHHH----------HHhHHHHHHcCcHHHHHHHHHHHHH----H-HHHHHHH
Confidence 0 0 00000 000000 0112333344332222111111111 1 111111
Q ss_pred HhHHHHHHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccccccc
Q psy13206 258 PYASSTFART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKF 336 (478)
Q Consensus 258 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 336 (478)
.+.+....+. +.+...........+++.+++.++.+++.||.+||+.+..+..+.++..+.+... . ..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~ 300 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT----P-------PN 300 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh----c-------hh
Confidence 2333333321 2221222333344566777888899999999999998877766555554433211 0 00
Q ss_pred chHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13206 337 NWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG 402 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g 402 (478)
.+...+....++++.+. ..+....+..|.+|++.||++.|+.+....++..+++.+.+.+.+..|
T Consensus 301 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11112222222222221 234556788899999999999999999999999999999998887653
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=214.34 Aligned_cols=333 Identities=13% Similarity=0.108 Sum_probs=214.7
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
++++|+.+.+++.+.+.+++.+++++.|++.||+|||+++..+.++..++.+++++++|++.+++.|+++|++.|...+.
T Consensus 36 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~ 115 (394)
T PRK03699 36 YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSI 115 (394)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhc-----CCccchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTV-----GPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~ 183 (478)
...++.|+.|+++|+...+.......+|..+++.+ ....+||+.+.....+.++..+...+ .+.|+. .+.
T Consensus 116 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~-- 190 (394)
T PRK03699 116 GTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKH-- 190 (394)
T ss_pred hhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--ccc--
Confidence 99999999999999998887766666555444433 33468998887655554443332222 222210 000
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
+++ ++++ .. + +..++.+.......+ ....+...+..|.|.+
T Consensus 191 -------------~~~-----------------~~~~---~~----~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~ 231 (394)
T PRK03699 191 -------------APK-----------------ADKP---VA----K-EKWGIGVLFLAIAAL-LYILAQLTFISWVPEY 231 (394)
T ss_pred -------------Ccc-----------------ccCc---cc----c-ccCChHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 000 0000 00 0 001112222111111 1122334455677777
Q ss_pred HHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHH
Q psy13206 264 FART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLI 342 (478)
Q Consensus 264 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (478)
+.+. +.+............++..++.+..++++||++||+.+.....+.++....+. . .+ ..+....
T Consensus 232 l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~-~~--------~~~~~~~ 299 (394)
T PRK03699 232 AQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV---N-TD--------DPSHLLY 299 (394)
T ss_pred HHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH---H-cC--------CchHHHH
Confidence 6554 32322233333445567788999999999999999987766554444322221 1 11 0111111
Q ss_pred HHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q psy13206 343 SITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGV 419 (478)
Q Consensus 343 ~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~ 419 (478)
..+..+++.+ +..+....+..|..| +.+++..+.....+.+|+.++|.+.+.+.+..|....++..++...+..+
T Consensus 300 ~~~~~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 300 AILGLGFFSS-AIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 2222222111 222334445667665 44678888888899999999999999999988877776666655444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=218.15 Aligned_cols=354 Identities=14% Similarity=0.125 Sum_probs=217.0
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.+..+.+|+.+.|.++..++++++|+++||+|||++++++.+++.++++++++++|++.++++|+++|+|.|+..+.
T Consensus 35 ~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~ 114 (495)
T PRK14995 35 TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPA 114 (495)
T ss_pred HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhcc-ccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHH-HHhhccccCChHHHHHcCC
Q psy13206 109 APMYIGEIS-GAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVF-LMTFIWMPESPYFLIMKGR 182 (478)
Q Consensus 109 ~~~~~~E~~-p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~-~~~~~~~pESp~~l~~~~~ 182 (478)
....+.++. |+++|+++.+.......+|..+++.++ ...+||+.+++...+.++. .+...++||+|.- +.+
T Consensus 115 ~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~---~~~ 191 (495)
T PRK14995 115 TLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR---RDQ 191 (495)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCC
Confidence 888776654 789999999998888888877777665 4568999988766544443 3344557887631 111
Q ss_pred HHHHHHHH----------HHHhCCCCCc-hhh-HHHH----HHHHHHHHHHhhccchh--HHHhhcCcchhHHHHHHHHH
Q psy13206 183 DVDARKSL----------FWLRGGRESS-KDK-INLE----LSNIKQDVEREMKLSDD--FMDIISTPANRRSLLIVQIV 244 (478)
Q Consensus 183 ~~~a~~~l----------~~~~~~~~~~-~~~-~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 244 (478)
..+....+ ..+....+.. ... .... ..........+.+.+.+ ..++++++..+.... .
T Consensus 192 ~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~----~ 267 (495)
T PRK14995 192 PLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVV----M 267 (495)
T ss_pred CCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHH----H
Confidence 11111100 0011100000 000 0000 00000000111111111 123454433222111 1
Q ss_pred HHHhhhhhhhHHHHhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHH
Q psy13206 245 AVADVISGMSAVLPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYY 323 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~ 323 (478)
.+. ..........+.+..++...+ +............+...++.++.|++.||+|||+.+..+.++.+++.+.+...
T Consensus 268 ~~~-~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~- 345 (495)
T PRK14995 268 AMT-AMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT- 345 (495)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh-
Confidence 111 111222334455555554433 22223333344556677888999999999999998877766665554433211
Q ss_pred hhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13206 324 LLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH 400 (478)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~ 400 (478)
.. . ...+.........++..+.. .+.......+..|++.++.+.++.+....+|+.+++.+.+.+.++
T Consensus 346 --~~--~----~~~~~~~~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 346 --DF--S----TQQWQAWGLMALLGFSAASA-LLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred --cC--C----CchHHHHHHHHHHHHhHHHH-HHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0 01111111112222222211 122334556778999999999999999999999998888776543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=208.86 Aligned_cols=347 Identities=11% Similarity=0.124 Sum_probs=210.4
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHH---H-hhhHHHHHHHHHHHhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVI---F-TKHVYVLYVVRFMQGLAMGI 104 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~---~-a~~~~~l~~~R~l~G~~~g~ 104 (478)
+++.++.+.+++.+.+.+++.+++++.|+++||+|||+++..+..++.++++++. + .+|++.+++.|+++|++.+.
T Consensus 42 ~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~ 121 (402)
T TIGR00897 42 ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPL 121 (402)
T ss_pred HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHH
Confidence 4678999999999999999999999999999999999999999999998877653 3 35789999999999999998
Q ss_pred hhhhhhhhhhhccccccchhhhHHHHHHHHHhH-HHHhhcC----CccchhhHHHHHHHHHHH-HHHhhccccCChHHHH
Q psy13206 105 VFTVAPMYIGEISGAKCRGALSTFFIGMLNTGI-LLEYTVG----PYVDYDTLAYVSLVIPVV-FLMTFIWMPESPYFLI 178 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~-~l~~~~g----~~~~~~~~~~~~~~~~~~-~~~~~~~~pESp~~l~ 178 (478)
..+....++.|+.|+++||++.++.+...+.|. ++++.++ ...+|+...+.......+ ..+.....++.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 198 (402)
T TIGR00897 122 FAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT--- 198 (402)
T ss_pred HHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC---
Confidence 888888899999999999999999998888875 4555543 234544332222111111 1122222332210
Q ss_pred HcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHH
Q psy13206 179 MKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLP 258 (478)
Q Consensus 179 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (478)
.++ +++ ++ +.++. ...+++.+++|..+ ......+. ...+...+..
T Consensus 199 ----~~~-----------~~~-~~----~~~~~----------~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~ 243 (402)
T TIGR00897 199 ----PQH-----------MQT-RE----KFSEL----------GKAATILFTNPNVL----LGGMVRII-NTIGLFGFAV 243 (402)
T ss_pred ----ccc-----------ccC-Cc----chhhH----------HHHHHHHHcChhHH----HHHHHHHH-HHHHHHHHHH
Confidence 000 000 00 00000 01122344433222 11111111 1223344455
Q ss_pred hHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHH-HhhHHHHHHHHHHHHHHhhcccccccccccc
Q psy13206 259 YASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLL-VSCFGSGISQLIAGTYYLLSENYTVDLSKFN 337 (478)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 337 (478)
|.|.+..+.+.+............++..++.+..|+++||+|||+.+. .+.+..++..+.+........ ...
T Consensus 244 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-------~~~ 316 (402)
T TIGR00897 244 FLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFG-------HSF 316 (402)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccC-------CcH
Confidence 666555443333222223333456777889999999999999988653 223333332222211100000 011
Q ss_pred hHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy13206 338 WIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIIC 417 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~ 417 (478)
+...+....+++..+ +..+. ....+|..| ++||++.|+.+....+++.++|.+.+.+.+..|.+..+++.++..++.
T Consensus 317 ~~~~~~~~~~G~~~~-~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~ 393 (402)
T TIGR00897 317 AVALIIAIALGIFLA-GYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVS 393 (402)
T ss_pred HHHHHHHHHHHHHHH-HHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 111122222222222 12232 345567655 689999999999999999999999999999988877777777666665
Q ss_pred HHHhhe
Q psy13206 418 GVLVYF 423 (478)
Q Consensus 418 ~~~~~~ 423 (478)
+++.++
T Consensus 394 ~~~~~~ 399 (402)
T TIGR00897 394 AFLTAF 399 (402)
T ss_pred HHHHHH
Confidence 555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=212.91 Aligned_cols=318 Identities=16% Similarity=0.194 Sum_probs=204.6
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+++.+++.++..+++++.|+++||+|||+.+..+.++..++.++++++++++.+++.|+++|++.+...+.
T Consensus 34 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 113 (385)
T TIGR00710 34 DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVI 113 (385)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHH-hhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLM-TFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~-~~~~~pESp~~l~~~~~~ 183 (478)
...++.|+.|+++|++..+..+....+|..+++.++. ..+||..++......++..+ ...+.||+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 187 (385)
T TIGR00710 114 SQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE------ 187 (385)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc------
Confidence 9999999999999999999998888888777766654 35788777665554444333 334467764200
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
++. +.... ..++++.++++..+....... . ..........+.+..
T Consensus 188 --------------~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 232 (385)
T TIGR00710 188 --------------ARI--QISTY--------------FETFLLLLKSKMFWGYALIYG-A----SFGGFFAFFSGAPFV 232 (385)
T ss_pred --------------ccC--CHHHH--------------HHHHHHHHcCchhHHHHHHHH-H----HHHHHHHHHHcChHH
Confidence 000 00000 011223333332222111111 1 111222333344444
Q ss_pred HHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHH
Q psy13206 264 FARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLI 342 (478)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (478)
+.+..+ +............+..+++.++.+++.||+|||+.+..+..+.++..+.+....... ...+ ...
T Consensus 233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~ 303 (385)
T TIGR00710 233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG--------LGSW-AMI 303 (385)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc--------cchH-HHH
Confidence 432222 211222333345566778899999999999999988777665555443332211100 0011 111
Q ss_pred HHHHHHHHHHhc-ccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13206 343 SITCFAVIYSIG-LGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVI 397 (478)
Q Consensus 343 ~~~~~~~~~~~g-~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l 397 (478)
.........+.+ ..+....+..|.+| +.|+++.++.+.....++.+.+.+.+.+
T Consensus 304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 304 IGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111111111 22344556678776 5799999999888877777777776644
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=208.84 Aligned_cols=355 Identities=13% Similarity=0.138 Sum_probs=216.7
Q ss_pred ccceeecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHh-hhHHHHHHHHH
Q psy13206 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLT-TGPLYIISWLL 81 (478)
Q Consensus 3 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~-~~~l~~i~~~~ 81 (478)
++..|...|.+|.+.++ +++.++.+.|++.+.+.++..+.+++.|+++||+|||+.++. +.++..++.++
T Consensus 10 ~~~~~~~~~~l~~~l~~---------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~ 80 (375)
T TIGR00899 10 GIAGALQFPTLSLFLSE---------EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLL 80 (375)
T ss_pred HHHHHHHhhHHHHHHHc---------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence 34455666777765431 478899999999999999999999999999999999987665 55566677888
Q ss_pred HHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhh--hHHHHHHHHHhHHHHhhcC----CccchhhHHHH
Q psy13206 82 VIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGAL--STFFIGMLNTGILLEYTVG----PYVDYDTLAYV 155 (478)
Q Consensus 82 ~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~--~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~ 155 (478)
+++++|++.+++.|+++|.+.+...|....+..|+.|+++|++. .+......++|..+++.++ ...+||+.+++
T Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~ 160 (375)
T TIGR00899 81 FAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLT 160 (375)
T ss_pred HHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHH
Confidence 99999999999999999998888888888999999998887743 4555555566666655544 34578888777
Q ss_pred HHHHHHHHHH-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcch
Q psy13206 156 SLVIPVVFLM-TFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPAN 234 (478)
Q Consensus 156 ~~~~~~~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
.....++..+ ...++||+|++...+ +.. .+.++.++++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-----------------------~~~~~~~~~~~~ 201 (375)
T TIGR00899 161 AALAFVLCGVLVWLFLPSYPRGAPGA----------------LTR-----------------------LEVRGLLASRDT 201 (375)
T ss_pred HHHHHHHHHHHHHHhCCCcccCcccc----------------cCc-----------------------chhhhhhcCcch
Confidence 6555444433 334478877421000 000 001111222221
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHH---HHHHHHHHhhhhhHhhhhcCCchhHHHhhHH
Q psy13206 235 RRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLL---LGILVFLSTFPTAFLVDRTGRRPLLLVSCFG 311 (478)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~ 311 (478)
+ .+........ ........+.+..+.+..+ .++...+.+ ......++.++.+++.||+|||+.+..+.++
T Consensus 202 ~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 274 (375)
T TIGR00899 202 R-LLFVACTLMW----GCNILYIINMPLLIIHELG--LPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALA 274 (375)
T ss_pred H-HHHHHHHHHH----HHHHHHHhhhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHH
Confidence 1 1111111111 1111122233333332212 122222222 2334456677889999999999988776554
Q ss_pred HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHH
Q psy13206 312 SGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVM 391 (478)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~ 391 (478)
..+...... . .+ ..+..........+..+. ..+....+..|..|++ |+++.++.+...++|..+++
T Consensus 275 ~~~~~~~~~---~-~~--------~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~ 340 (375)
T TIGR00899 275 GVAFYTGLA---A-DN--------SLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAG 340 (375)
T ss_pred HHHHHHHHH---H-HH--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHH
Confidence 443322211 1 00 011111111222222222 2344556778988764 67999999999999999999
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecC
Q psy13206 392 KMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPE 427 (478)
Q Consensus 392 ~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pE 427 (478)
.+.+.+.+..|....+.+.++..++..+. ..+++|
T Consensus 341 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~ 375 (375)
T TIGR00899 341 SVGGILAERWSYHAVYWFAIVMLIVALFC-LLLIKD 375 (375)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHH-HheecC
Confidence 99999988888766666666554444443 444443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=218.19 Aligned_cols=356 Identities=12% Similarity=0.098 Sum_probs=220.2
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+|+.+.+.++.+++.++.|+++||+|||+.++++.+++.++++++++++|++.++++|+++|++.|...+.
T Consensus 31 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~ 110 (485)
T TIGR00711 31 DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPL 110 (485)
T ss_pred hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHH-HhhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~-~~~~~~pESp~~l~~~~~~ 183 (478)
...++.|++|+++|+++.++......+|..+++.++. ..+||+.++....+.++.. +...+.||.++ ..+++.
T Consensus 111 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 188 (485)
T TIGR00711 111 SFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP--AASENF 188 (485)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc--cccCCC
Confidence 9999999999999999999998888888877776653 3578888877655544433 33445677543 111121
Q ss_pred HHHHHHH--------H-HH-hCCCCCchh--hHHHH-HHH---HH--HHHHHhhccchhHHHhhcCcchhHHHHHHHHHH
Q psy13206 184 VDARKSL--------F-WL-RGGRESSKD--KINLE-LSN---IK--QDVEREMKLSDDFMDIISTPANRRSLLIVQIVA 245 (478)
Q Consensus 184 ~~a~~~l--------~-~~-~~~~~~~~~--~~~~~-~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (478)
+.....+ . .. ++.+..... ..... ... .. ...+.+.+.+....+.++++..+........
T Consensus 189 d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 266 (485)
T TIGR00711 189 DFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSL-- 266 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHH--
Confidence 1111100 0 00 111111000 00000 000 00 0001111111111234444433322211111
Q ss_pred HHhhhhhhhHHHHhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHh
Q psy13206 246 VADVISGMSAVLPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYL 324 (478)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~ 324 (478)
.....+....+.+.++.+..+ +............++.+++.++.+++.||+|||+.+..+..+.++....+...
T Consensus 267 ---~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~-- 341 (485)
T TIGR00711 267 ---LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFT-- 341 (485)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcc--
Confidence 111222333445555544322 22223333444566777889999999999999998877766666554433210
Q ss_pred hcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13206 325 LSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH 400 (478)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~ 400 (478)
... ....+.........+++.+....+ ......+..|++.||++.|+.+....+|+.+++.+.+.+.++
T Consensus 342 ~~~------~~~~~~~~~~~~l~g~g~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 342 FTP------DTPFLAIALPQFIRGFGMGCFFMP-LTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred CCC------CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 010 001111111122222222221222 234445778999999999999999999999999998887764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=213.08 Aligned_cols=352 Identities=16% Similarity=0.250 Sum_probs=240.4
Q ss_pred CcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhh
Q psy13206 27 ETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK--HVYVLYVVRFMQGLAMGI 104 (478)
Q Consensus 27 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~--~~~~l~~~R~l~G~~~g~ 104 (478)
+.+++.|++|++++.|.++.|+++++++.|+++||||-|+++..+.++.++++++.-++. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457889999999999999999999999999999999999999999999999999997775 567889999999999999
Q ss_pred hhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhc----CCc-cchhhHHHHHHHHHHHHHHhhcc-ccCChHHHH
Q psy13206 105 VFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTV----GPY-VDYDTLAYVSLVIPVVFLMTFIW-MPESPYFLI 178 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~----g~~-~~~~~~~~~~~~~~~~~~~~~~~-~pESp~~l~ 178 (478)
.+|+...+.+.|+|+++|++..++...+..+|.++...+ ... .+|+..+++.....++..+++.+ .-|+|.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~--- 221 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS--- 221 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc---
Confidence 999999999999999999999998888777776665433 334 79999999888887776655543 355552
Q ss_pred HcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhc---cchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhH
Q psy13206 179 MKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMK---LSDDFMDIISTPANRRSLLIVQIVAVADVISGMSA 255 (478)
Q Consensus 179 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (478)
+++...+.|.+..++.+.+++. .+.+++++++++. ++..++..+....+...
T Consensus 222 --------------------~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~-----vwai~~~~f~~~~~~~~ 276 (466)
T KOG2532|consen 222 --------------------KHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPP-----VWAIWISAFGGNWGFYL 276 (466)
T ss_pred --------------------cCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHH-----HHHHHHHHHHHHHHHHH
Confidence 1111122333333332221111 3557777776543 23334444555667778
Q ss_pred HHHhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCc--------hh-HHHhhHHHHHHHHHHHHHHhh
Q psy13206 256 VLPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRR--------PL-LLVSCFGSGISQLIAGTYYLL 325 (478)
Q Consensus 256 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr--------~~-l~~~~~~~~i~~~~~~~~~~~ 325 (478)
+..|.|.++++..+ +..+.+..+.+..+..++..+.+|.++||.-+| |+ -.++..+.+++++.++ +.
T Consensus 277 l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~---~~ 353 (466)
T KOG2532|consen 277 LLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLA---FT 353 (466)
T ss_pred HHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeee---ec
Confidence 88899999887544 444556777788888899999999999998663 22 2223333333332221 11
Q ss_pred cccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccC-CccccchhhHHHHHHHHHHHHHHHHHHHHHHHh---c
Q psy13206 326 SENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFF-PSNTRGLAGGVTTITLTVISFLVMKMYQVICDH---Y 401 (478)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~-p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~---~ 401 (478)
.. ...+...+.+.+...+.+... ...+..-.- -+++-+..+|+.+.++.+.++++|.+.+.+.+. .
T Consensus 354 ~~-------~~~~~a~~~l~~~~~~~g~~~---~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~ 423 (466)
T KOG2532|consen 354 SD-------EHRLLAVILLTIAIGLSGFNI---SGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTRE 423 (466)
T ss_pred CC-------CcchHHHHHHHHHHHHcccch---hhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHH
Confidence 11 011222222222111111111 112222222 567789999999999999999999999988742 2
Q ss_pred ccchHHHHHHHHHHHHHH
Q psy13206 402 GVYLNFYIYSLGCIICGV 419 (478)
Q Consensus 402 g~~~~~~~~~~~~~l~~~ 419 (478)
.|...|++.++..++..+
T Consensus 424 eW~~VF~i~a~i~~~~~i 441 (466)
T KOG2532|consen 424 EWRIVFLIAAGILIVGNI 441 (466)
T ss_pred HHHHHHHHHHHHHHHhch
Confidence 455666666655555543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=208.07 Aligned_cols=326 Identities=14% Similarity=0.148 Sum_probs=204.3
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.++..+.+.+++.+++++.|+++||+|||+.+.++.++..++++++.++++++.+++.|+++|++.+...+.
T Consensus 42 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 121 (406)
T PRK15402 42 DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAV 121 (406)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHHHH-hhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVFLM-TFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~~~-~~~~~pESp~~l~~~~~~ 183 (478)
...++.|+.|+++|++..+........|..+++.++ ...+||+.+++.....++..+ .+..+||+++.. +
T Consensus 122 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 196 (406)
T PRK15402 122 GYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---G-- 196 (406)
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---c--
Confidence 999999999999999887777666555555555443 345788877765554444333 334467765210 0
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
++. . .++. ..++++.++++..+..... . .. .......+..+.+.+
T Consensus 197 -------------~~~----~---~~~~----------~~~~~~~~~~~~~~~~~~~---~-~~-~~~~~~~~~~~~p~~ 241 (406)
T PRK15402 197 -------------EKL----S---LKEL----------GRDYKLVLKNRRFVAGALA---L-GL-VSLPLLAWIALSPVI 241 (406)
T ss_pred -------------ccc----c---HHHH----------HHHHHHHHcCcHHHHHHHH---H-HH-HHHHHHHHHHHhHHH
Confidence 000 0 0000 0122334443322211111 1 11 111111222233433
Q ss_pred HHhcCCCCCCchhhH---HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHH
Q psy13206 264 FARTEGSLITPDECT---LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIP 340 (478)
Q Consensus 264 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (478)
+.+..+ .++.... ....++..++.++.+++.||++||+.+..+.+..++..+.......... ...+..
T Consensus 242 ~~~~~g--~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~ 312 (406)
T PRK15402 242 LISGEQ--LSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISS-------HAYLWL 312 (406)
T ss_pred HHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHccc-------ccHHHH
Confidence 333222 2222222 2234456678888999999999999888776665555444332211100 001111
Q ss_pred HHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q psy13206 341 LISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYL 405 (478)
Q Consensus 341 ~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~ 405 (478)
......+....+... +...... ...+++.||+..++.+....++..+++.+.+.+.+..+.+.
T Consensus 313 ~~~~~~~g~g~~~~~-~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 313 TAGLSLYAFGIGLAN-AGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL 375 (406)
T ss_pred HHHHHHHHHHHHHHh-hhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence 112222222222211 2222222 22344889999999999999999999999988877766543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=210.77 Aligned_cols=332 Identities=17% Similarity=0.116 Sum_probs=207.3
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhc
Q psy13206 37 SSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEI 116 (478)
Q Consensus 37 ~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~ 116 (478)
.+++.+++.++..+++++.|+++||+|||+.+..+.++..++.++.+++++++.+++.|++.|++.+ ..+....++.|+
T Consensus 56 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~ 134 (408)
T PRK09874 56 SGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQ 134 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHh
Confidence 5889999999999999999999999999999999999999999999999999999999999999854 567778889999
Q ss_pred cccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHH-HhhccccCChHHHHHcCCHHHHHHHHH
Q psy13206 117 SGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIMKGRDVDARKSLF 191 (478)
Q Consensus 117 ~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~-~~~~~~pESp~~l~~~~~~~~a~~~l~ 191 (478)
.|+++|++..+........|..+++.++. ..+|+..+++.....++.. +...++||.++- +
T Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------- 200 (408)
T PRK09874 135 VPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQP-------V------- 200 (408)
T ss_pred cCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCccc-------c-------
Confidence 99999999999888877777777666553 3467777665554433332 233345554310 0
Q ss_pred HHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCC
Q psy13206 192 WLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSL 271 (478)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (478)
++ + ...+. .+..+.+++++........... .. .......++.+.+..+.....
T Consensus 201 ------~~-~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~ 253 (408)
T PRK09874 201 ------SK-K--EMLHM--------------REVVTSLKNPKLVLSLFVTTLI--IQ--VATGSIAPILTLYVRELAGNV 253 (408)
T ss_pred ------cc-h--hhhHH--------------HHHHHhCcCCchHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHhccc
Confidence 00 0 00000 0011122222222211111111 11 111122233333333222211
Q ss_pred CC-chh---hHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHH
Q psy13206 272 IT-PDE---CTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCF 347 (478)
Q Consensus 272 ~~-~~~---~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (478)
.. ... ...+.++..+++.+..+++.||+|||+.+..+....++..+..... + ..+...+.....
T Consensus 254 ~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~~~ 321 (408)
T PRK09874 254 SNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV----Q--------TPLQLGILRFLL 321 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh----c--------cHHHHHHHHHHH
Confidence 11 111 1222345556777788999999999998887766655444332110 0 112111221222
Q ss_pred HHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhe
Q psy13206 348 AVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYF 423 (478)
Q Consensus 348 ~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~ 423 (478)
+++.+ ...+....+..+..|++.||+..++.+....+|..++|.+.+.+.+..+....|.+.++..++.+++.+.
T Consensus 322 g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 322 GAADG-ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HhhhH-hhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 22221 1223344556678899999999999999999999999999999998888777777666665555555443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=212.00 Aligned_cols=317 Identities=17% Similarity=0.211 Sum_probs=196.3
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+++.+++.++..+++++.|+++||+|||+.+..+.+++.++.+++.++++++.+++.|+++|++.+...+.
T Consensus 32 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 111 (392)
T PRK10473 32 DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVV 111 (392)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHH-HHhhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVF-LMTFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~-~~~~~~~pESp~~l~~~~~~ 183 (478)
...++.|+.|+++|++..+..+....+|..+++.++. ..+|++.+++.....++. .+.+.++||++.. +.
T Consensus 112 ~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~-- 186 (392)
T PRK10473 112 AFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA---RA-- 186 (392)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc---cc--
Confidence 9999999999999999999988887777666665543 357888777665554443 3344556776420 00
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
+++ . . . .+..++.++++..+......... ......+..+.+..
T Consensus 187 -------------~~~--~-~--~--------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 229 (392)
T PRK10473 187 -------------PAA--S-S--K--------------PRENSESLLNRFFLSRLVITTLS-----VTVILTFVNTSPVL 229 (392)
T ss_pred -------------CCc--c-c--h--------------HHHHHHHHhCHHHHHHHHHHHHH-----HHHHHHHHHhCHHH
Confidence 000 0 0 0 00011222222222222211111 11111222223333
Q ss_pred HHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHH
Q psy13206 264 FART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLI 342 (478)
Q Consensus 264 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (478)
+.+. +.+...........++..+++.++.+++.||+|||+.+..+.++..+..+.+..... .+....
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 297 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS------------HAVSLF 297 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
Confidence 3322 222111122233456667788889999999999999888777666555444332110 011111
Q ss_pred HHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q psy13206 343 SITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYL 405 (478)
Q Consensus 343 ~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~ 405 (478)
.......+++.+.+ .....++.|.+.|+ |.......++..+++.+.+.+.+..|...
T Consensus 298 ~~~l~~~g~~~~~~---~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 298 GITLICAGFSVGFG---VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred HHHHHHHHHHHHhH---HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 11122222222221 13344555655553 44444455566666677777777666543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=207.07 Aligned_cols=319 Identities=16% Similarity=0.205 Sum_probs=200.1
Q ss_pred eecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh
Q psy13206 7 GWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK 86 (478)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~ 86 (478)
+...|.+|.+.+ ++++++.+.+++.+++.++..+++++.|+++||+|||+.+..+.++..++..++.+++
T Consensus 8 ~~~~p~~~~~~~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~ 77 (377)
T PRK11102 8 DMYLPALPVIAA----------DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ 77 (377)
T ss_pred HHHhccHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 334455666554 4788999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHH
Q psy13206 87 HVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVV 162 (478)
Q Consensus 87 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~ 162 (478)
+++.+++.|+++|++.+...+....++.|+.|+++|++..++.+....+|..+++.++. ..+|++.++....+.++
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 157 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAIL 157 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888877776653 34788877765555544
Q ss_pred H-HHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHH
Q psy13206 163 F-LMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIV 241 (478)
Q Consensus 163 ~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (478)
. .+...++||+++- ++ +++ .+.... ..++++.++++..+. ..
T Consensus 158 ~~~~~~~~~~~~~~~-------~~-----------~~~--~~~~~~--------------~~~~~~~~~~~~~~~---~~ 200 (377)
T PRK11102 158 AAALVFFFIPETLPK-------ER-----------RQP--FHLRTT--------------IRNFASLFRHKRVLG---YM 200 (377)
T ss_pred HHHHHHHhCCccCcc-------cc-----------cCC--CChHHH--------------HHHHHHHHcChHHHH---HH
Confidence 3 3344556776420 00 000 000000 012223333322211 11
Q ss_pred HHHHHHhhhhhhhHHHHhHHHHHHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHH
Q psy13206 242 QIVAVADVISGMSAVLPYASSTFART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAG 320 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~ 320 (478)
. .......+...+..+.+..+.+. +.+............+..+++.++.+++.||+|||+.+..+.+...+..+...
T Consensus 201 -~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 278 (377)
T PRK11102 201 -L-ASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLV 278 (377)
T ss_pred -H-HHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 1 11112223333444444444332 22212222333445566778889999999999999988877665443322221
Q ss_pred HHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHH
Q psy13206 321 TYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLT 384 (478)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~ 384 (478)
....... ..+........+....+. ..+....+..|..| +.||++.++.+....
T Consensus 279 ~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 332 (377)
T PRK11102 279 VSALLDL--------GFWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HMAGTASSLAGTLRF 332 (377)
T ss_pred HHHHHhh--------hHHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-ccchHHHHHHHHHHH
Confidence 1111000 011111111112111111 12223345567766 789999998876644
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=205.73 Aligned_cols=344 Identities=13% Similarity=0.083 Sum_probs=207.1
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+|+.+.+.+++.+++++.|+++||+|||+++.++.+++.+++++++++.++ ++.|+++|++.|...|+
T Consensus 32 ~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa 108 (393)
T PRK11195 32 ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPA 108 (393)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 456677889999999999999999999999999999999999999999999988887764 78999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCcc-chh--hHHHHHHHHHHHHHHhhccccCChHHHHHcCCHHH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV-DYD--TLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVD 185 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~-~~~--~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~ 185 (478)
..+++.|+.|+++|+++.++.+.....|.++++.++..+ +|. ..+.+.....++..+...++||+|..... +
T Consensus 109 ~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~--~--- 183 (393)
T PRK11195 109 KYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGARRPG--Q--- 183 (393)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc--c---
Confidence 999999999999999999999988888888887776432 332 22222221112223344567887632100 0
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHH
Q psy13206 186 ARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFA 265 (478)
Q Consensus 186 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (478)
+.+ . ....++.. ...+.+++++..+..+.......... .........|.+..+
T Consensus 184 -----------~~~-~---~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l- 236 (393)
T PRK11195 184 -----------SWN-P---IALLRDFF----------HACRVLWRDKLGRFSLAGTTLFWGAG-ATLRFLVLAWAPVAL- 236 (393)
T ss_pred -----------CCC-H---HHHHHHHH----------HHHHHHHhCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc-
Confidence 000 0 00000100 01223344333332222211111110 001111112222221
Q ss_pred hcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHH
Q psy13206 266 RTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISIT 345 (478)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (478)
+.+...........+++.+++++..+++.||.++|+.+..+.. .++..+.+. . .+ ..+.......
T Consensus 237 --g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~---~-~~--------~~~~~~~~~~ 301 (393)
T PRK11195 237 --GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMA---L-QH--------SLLPAYPLLI 301 (393)
T ss_pred --CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHH---H-Hh--------HHHHHHHHHH
Confidence 1221222333444556778888899999999998887766543 232222211 0 10 0111112222
Q ss_pred HHHHHHHhcccccchhhhcccCCccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhee
Q psy13206 346 CFAVIYSIGLGPLVPTLQGEFFPSNT-RGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFI 424 (478)
Q Consensus 346 ~~~~~~~~g~g~~~~~~~~El~p~~~-Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 424 (478)
..+++.+... +.......|..|++. +|++.++.+....++..++..+++.+ ...|....+.+.....++...+.+.+
T Consensus 302 ~~G~~~g~~~-~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 302 LIGALGGFFV-VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred HHHHhhhhhh-hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 223344567666654 79999999999999999988888754 56676666666555555555554444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=211.46 Aligned_cols=353 Identities=15% Similarity=0.138 Sum_probs=212.8
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+|+.+.+.++..+++++.|+++||+|||++++.+.+++.++.++++++++++.++++|+++|++.|...+.
T Consensus 39 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~ 118 (471)
T PRK10504 39 SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPV 118 (471)
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHHH-HhhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~~-~~~~~~pESp~~l~~~~~~ 183 (478)
..+++.|+.|+++|+...+......++|..+++.++ ...+||+.++.......+.. +.....|+++. .+.|.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~ 195 (471)
T PRK10504 119 GRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRF 195 (471)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCC
Confidence 999999999999999999888877777777766654 34578888876654433332 23333455431 11122
Q ss_pred HHHHHHHH-------H--HhCCCC-CchhhHHHHHH-----HH--HHHHHHh-hccchhHHHhhcCcchhHHHHHHHHHH
Q psy13206 184 VDARKSLF-------W--LRGGRE-SSKDKINLELS-----NI--KQDVERE-MKLSDDFMDIISTPANRRSLLIVQIVA 245 (478)
Q Consensus 184 ~~a~~~l~-------~--~~~~~~-~~~~~~~~~~~-----~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (478)
+.+..... . ..+.+. ..........- .. ...++++ .+...+ .++++++..+..+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~--- 271 (471)
T PRK10504 196 DLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRTRTFSLGLAGSF--- 271 (471)
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcccchHHHHHHHH---
Confidence 22111100 0 011110 00000000000 00 0000111 111112 23444443322211111
Q ss_pred HHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhH---HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHH
Q psy13206 246 VADVISGMSAVLPYASSTFARTEGSLITPDECT---LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTY 322 (478)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~ 322 (478)
... .+......+.+.+++...+ .++.... ....+..+++.++.+++.||+|||+++..+..+.++..+.+...
T Consensus 272 -~~~-~~~~~~~~~~~~~~~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 347 (471)
T PRK10504 272 -AGR-IGSGMLPFMTPVFLQIGLG--FSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV 347 (471)
T ss_pred -HHH-HHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc
Confidence 111 1112222233434433222 1222222 22334445566778999999999999887777666654443211
Q ss_pred HhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13206 323 YLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG 402 (478)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g 402 (478)
.. ....+.........+++.+... +....+..+.+|++.||++.++.+....+|..+++.+.+.+.+..+
T Consensus 348 ---~~------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 348 ---AL------LGWYYLLPFVLFLQGMVNSTRF-SSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred ---cc------cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 0111111111122222222222 2345677788999999999999999999999999999888776654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=205.71 Aligned_cols=316 Identities=16% Similarity=0.172 Sum_probs=198.4
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+++.+++.+++.+++++.|+++||+|||+++..+.++..++.++++++++++.+++.|+++|++.+...+.
T Consensus 35 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 114 (401)
T PRK11043 35 DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVI 114 (401)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDV 184 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~ 184 (478)
...++.|+.|+++|++..+.......+|..+++.++ ...+||..++......++..+...+++|+++ + + +
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-~ 188 (401)
T PRK11043 115 WQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKK----A-R-K 188 (401)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCC----c-c-c
Confidence 889999999999998877776655555555554443 3468888777665555554444444555431 0 0 0
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHH
Q psy13206 185 DARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTF 264 (478)
Q Consensus 185 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (478)
++ + .+.++++.++++..+........ .......+..+.+..+
T Consensus 189 -------------~~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~ 230 (401)
T PRK11043 189 -------------QS---Q-----------------DALTFKQLLKSKTYLGNVLIFAA-----CSAAFFAWLTGSPFIL 230 (401)
T ss_pred -------------cc---h-----------------HHHHHHHHHcChhHHHHHHHHHH-----HHHHHHHHHHHhHHHH
Confidence 00 0 00122333333332222211111 1112222333444444
Q ss_pred HhcCCCCCCchhhHH---HHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHH
Q psy13206 265 ARTEGSLITPDECTL---LLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPL 341 (478)
Q Consensus 265 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (478)
.+.+. ++...+. ...+...++.+..+++.||+|||+......++.+++.+.+........ +..+...
T Consensus 231 ~~~g~---s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 300 (401)
T PRK11043 231 EQMGY---SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSH-------PSLVPLL 300 (401)
T ss_pred HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CcHHHHH
Confidence 43322 2222222 234456677888889999999998765555554444332221111110 0111111
Q ss_pred HHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13206 342 ISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH 400 (478)
Q Consensus 342 ~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~ 400 (478)
..........+ ...+.......|..| +.||++.|+.+..+..++..++.+.+.+.+.
T Consensus 301 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 301 IPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 11111122121 122333344456665 5799999999999888888888888887653
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=203.94 Aligned_cols=146 Identities=20% Similarity=0.331 Sum_probs=126.0
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.+..+.++..+++++|+.+++++.|+++||+|||+++..+..++.++++++++++|++.++++|+++|++.+...+.
T Consensus 45 ~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~ 124 (413)
T PRK15403 45 DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATV 124 (413)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999887888
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHH-hhccccCCh
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLM-TFIWMPESP 174 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~-~~~~~pESp 174 (478)
...++.|+.|+++|++..+.......+|..+++.++. ..+||+.+++.....++..+ ...++||++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 125 GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 8889999999999999988888877777777766654 35799888776655555443 344578875
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=194.89 Aligned_cols=344 Identities=18% Similarity=0.218 Sum_probs=233.0
Q ss_pred cccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHH---HHHHHHHHHhhhhhh
Q psy13206 28 TYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVY---VLYVVRFMQGLAMGI 104 (478)
Q Consensus 28 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~---~l~~~R~l~G~~~g~ 104 (478)
+++++|+.|.++++++--+..++.-++.|++.||||.|+..++++++..+.++..+++.+++ ++++.+++.|++ |+
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-Ga 120 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GA 120 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cc
Confidence 58999999999999999999999999999999999999999999999999999999996554 999999999999 99
Q ss_pred hhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cc---hhhHHHHHHHHHHHHHH-hhccccCChHH
Q psy13206 105 VFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VD---YDTLAYVSLVIPVVFLM-TFIWMPESPYF 176 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~---~~~~~~~~~~~~~~~~~-~~~~~pESp~~ 176 (478)
.+.+++.++++|+|++++|.+.++.. ..++|..+...++|. .+ |+....+-....++..+ ....+.+.|..
T Consensus 121 sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~ 199 (417)
T COG2223 121 SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH 199 (417)
T ss_pred eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 99999999999999999999999988 778887777776664 34 55554433333333222 22333333321
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHH
Q psy13206 177 LIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAV 256 (478)
Q Consensus 177 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (478)
... .++ . . ...+++.+++++.| .. .+.....+.++-.+
T Consensus 200 r~~-----------------~~~----~---------------~-~~~~~~v~~~~~~W---~l--sllY~~tFG~Fvgf 237 (417)
T COG2223 200 RAS-----------------VKP----Q---------------L-PAQLKAVFSNKDTW---LL--SLLYFATFGGFVGF 237 (417)
T ss_pred hcc-----------------ccc----c---------------c-hhHHHHHhcCcchH---HH--HHHHHHHHHHHHHH
Confidence 000 000 0 0 01223333322222 11 11222234455566
Q ss_pred HHhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccc
Q psy13206 257 LPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSK 335 (478)
Q Consensus 257 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 335 (478)
..+.+.++.++.+ ++.++........+...+.-..+|+++||+|.++.++....+++++....+....... ...
T Consensus 238 s~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~-----~~~ 312 (417)
T COG2223 238 SAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFG-----HGG 312 (417)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccc-----cCc
Confidence 6777877776655 3344444555555555566678999999999999998888888877766553321110 001
Q ss_pred cchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHH
Q psy13206 336 FNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVY-LNFYIYSLGC 414 (478)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~-~~~~~~~~~~ 414 (478)
.............++.+.|.|. .+-+++.+||. +-|...|+..+++.+|++..|..++...+..|.+ ..|+++....
T Consensus 313 ~~~~~~~~~l~l~~~~G~GnGs-vfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~ 390 (417)
T COG2223 313 SFVVFVAVFLALFVFAGLGNGS-VFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFY 390 (417)
T ss_pred chHHHHHHHHHHHHHhccCcch-heeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1112222233344455566555 34556666765 5688999999999999999999999999999844 4556666555
Q ss_pred HHHHHHhh
Q psy13206 415 IICGVLVY 422 (478)
Q Consensus 415 ~l~~~~~~ 422 (478)
+++..+.+
T Consensus 391 ~~a~v~~~ 398 (417)
T COG2223 391 LVALVLTW 398 (417)
T ss_pred HHHHHHHH
Confidence 55555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-24 Score=205.61 Aligned_cols=319 Identities=19% Similarity=0.271 Sum_probs=201.9
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..+++|++.+++.|+++|++.+...+.
T Consensus 26 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 105 (352)
T PF07690_consen 26 ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPA 105 (352)
T ss_dssp CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccccccc
Confidence 46789999999999999999999999999999999999999999999999777777788889999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHHHHH-hhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVVFLM-TFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~~~~-~~~~~pESp~~l~~~~~~ 183 (478)
...++.|+.|+++|++..+.......+|.++++.++.. .+||+.+++.....++..+ ...+.+|.|+...
T Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~----- 180 (352)
T PF07690_consen 106 SNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRE----- 180 (352)
T ss_dssp HHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT-----
T ss_pred ccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccc-----
Confidence 99999999999999999999999999888887776543 4688888777666655544 2344444432000
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
++++.++. .++++...+.+++.++++..+ ..+..... ..........+.+.+
T Consensus 181 -------------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~ 232 (352)
T PF07690_consen 181 -------------RESPKESE----------SKKPKPLKPGFKSLFKNPVLW-ILLIAFFL----FFFVFSGFSFFLPLY 232 (352)
T ss_dssp ---------------SSTTTT------------HHHCCCH-CTHHHHHHCCH-HHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred -------------cccccccc----------cccccccccccccccccchhh-hhhhhhhH----HHHHHHHhhcccchh
Confidence 00000000 000011111123333222222 11111111 111222233444443
Q ss_pred HHhcCCCCCCchhh---HHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHH
Q psy13206 264 FARTEGSLITPDEC---TLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIP 340 (478)
Q Consensus 264 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (478)
..+..+.. +.... ..+..+...++.++.+++.||+++|+..........+..+.+...... ......
T Consensus 233 l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 302 (352)
T PF07690_consen 233 LQEVLGFS-GPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS---------SSPVWL 302 (352)
T ss_dssp CCHHHHCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH---------CHHHHH
T ss_pred hhhccCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHH
Confidence 22221111 12333 334455566678899999999999877766555554443332211100 001111
Q ss_pred HHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHH
Q psy13206 341 LISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVM 391 (478)
Q Consensus 341 ~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~ 391 (478)
.....+++++.+. ..+....+..|.+|++.||++.|+.+....+++.++|
T Consensus 303 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 303 IIALFLIGFGFGI-VFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHH-HCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 2222223332221 2455677889999999999999999999999988876
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=210.49 Aligned_cols=356 Identities=14% Similarity=0.136 Sum_probs=207.0
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHH-HHHHHhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYV-VRFMQGLAMGIVFT 107 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~-~R~l~G~~~g~~~~ 107 (478)
+++.+..+.+++.+.++++..++.++.|+++||+|||++++.+.++..+++++++++++++.+++ .|+++|++.|...+
T Consensus 48 ~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~ 127 (455)
T TIGR00892 48 IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQ 127 (455)
T ss_pred HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhh
Confidence 57889999999999999999999999999999999999999999999999999999999998875 57999999998777
Q ss_pred hhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHHhh-ccccCChHHHHHcCC
Q psy13206 108 VAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLMTF-IWMPESPYFLIMKGR 182 (478)
Q Consensus 108 ~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~~-~~~pESp~~l~~~~~ 182 (478)
....++.|++| ++|+++.++.+.+..+|..+++.++. ..+||+.++....+.++..+.. ...|+.+.. .+.+
T Consensus 128 ~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~ 204 (455)
T TIGR00892 128 PSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSK 204 (455)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--cccc
Confidence 77888899996 78999999998888877766655543 3579888877665544333222 223322210 0000
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHH
Q psy13206 183 DVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASS 262 (478)
Q Consensus 183 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (478)
.++ . .... +....++. +.. .. .++.+...+ .+.++++..+.... .... ...+......+.+.
T Consensus 205 ~~~-~---~~~~--~~~~~~~~--~~~---~~-~~~~~~~~~-~~~~~~~~~~~~~~----~~~l-~~~~~~~~~~~l~~ 266 (455)
T TIGR00892 205 SKS-K---EGLP--PDGSTKKL--SKK---ST-AEKINRFLD-FSLFTHRGFLVYLS----GNVI-MFLGFFAPIIFLVP 266 (455)
T ss_pred ccc-c---ccCC--CCCccccc--ccc---ch-hhhhhhhcc-hHHhcCchHHHHHH----HHHH-HHHHccchHHHHHH
Confidence 000 0 0000 00000000 000 00 000000001 12344332221111 1111 11122222334444
Q ss_pred HHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhc--CCchhHHHh--hHHHHHHHHHHHHHHhhcccccccccccch
Q psy13206 263 TFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRT--GRRPLLLVS--CFGSGISQLIAGTYYLLSENYTVDLSKFNW 338 (478)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~--GRr~~l~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 338 (478)
+..+.+.+.........+.+++.+++.++.+++.||. ++|+....+ .+..++..+... . .+ ..+
T Consensus 267 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~---~-~~--------~~~ 334 (455)
T TIGR00892 267 YAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA---L-AG--------DYT 334 (455)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH---H-hc--------hHH
Confidence 4443332222223333445566677788889999974 333333222 222222211111 0 11 111
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Q psy13206 339 IPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG-VYLNFYIYSLGCIIC 417 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~l~ 417 (478)
...+....+++.++ ...+..+.+..|.+|++.++++.|+.+....++.+++|.+.+.+.+..+ ....+++.++..++.
T Consensus 335 ~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 335 GLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSA 413 (455)
T ss_pred HHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHH
Confidence 11122222222221 1234456677899999999999999999999999999999999888775 445555555544443
Q ss_pred H
Q psy13206 418 G 418 (478)
Q Consensus 418 ~ 418 (478)
+
T Consensus 414 ~ 414 (455)
T TIGR00892 414 G 414 (455)
T ss_pred H
Confidence 3
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=200.45 Aligned_cols=353 Identities=11% Similarity=0.072 Sum_probs=210.3
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCc-hhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGR-KPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFT 107 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GR-r~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~ 107 (478)
+++++..|.|++.+++.++.+++++++|+++||+|| |+++.++.++..+++.+..+.++++.+.+.|++.|++.+...+
T Consensus 32 ~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (418)
T TIGR00889 32 TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIA 111 (418)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHH
Confidence 578899999999999999999999999999999965 7788888888888888889999999999999999998777766
Q ss_pred hhhhhh----h----hccccccchhhhHHHHHHHHHhHHHHhhcCCccchhhHHHHHHHHHHHHHHhhccccCChHHHHH
Q psy13206 108 VAPMYI----G----EISGAKCRGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIM 179 (478)
Q Consensus 108 ~~~~~~----~----E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~ 179 (478)
...+.. . |......|.+..+. .+..+|..++..++....|. .+++.....++..+...++||+|+ .
T Consensus 112 ~~~~l~~~~~~~~g~~~~~~~~~~r~~G~--lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~---~ 185 (418)
T TIGR00889 112 LTNSISYANLPQAGLDVVTDFPPIRVMGT--IGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALTLPDIPV---A 185 (418)
T ss_pred HHHHHHHHHHhhcCCCchhcCCCeeeehh--HHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhcCCCCCC---C
Confidence 655442 2 33333334444332 34455555444443222232 344444444444444556788762 0
Q ss_pred cCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHh
Q psy13206 180 KGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPY 259 (478)
Q Consensus 180 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (478)
+.+ ++. +.. + ..+.+..+.++++..+..+......... ......+
T Consensus 186 ~~~--------------~~~---~~~-----------~--~~~~~~~~~~k~~~~~~~~~~~~~~~~~-----~~~~~~~ 230 (418)
T TIGR00889 186 KST--------------AKM---SIK-----------V--MLGLDAFILFKNKRMAIFFFFSMLLGAP-----LQITNIF 230 (418)
T ss_pred ccc--------------ccc---CHH-----------H--HhhhhHHHHhcCCCeeeHHHHHHHHHhH-----HHHHHHh
Confidence 000 000 000 0 0001122334444322222221111111 1111223
Q ss_pred HHHHHHhcCCCCC--------CchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccc
Q psy13206 260 ASSTFARTEGSLI--------TPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTV 331 (478)
Q Consensus 260 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 331 (478)
.+..+++.+.+.. .......+..+...++.++.+++.||+|||+++..+.++.++........ ..+.
T Consensus 231 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~---~~~~-- 305 (418)
T TIGR00889 231 GNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG---DPEY-- 305 (418)
T ss_pred HHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---Ccch--
Confidence 3333333222111 11222333445666778889999999999999988887776654433210 1000
Q ss_pred cccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHH-HHHHHHHHHHHHHHHHHHHhcc------cc
Q psy13206 332 DLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTT-ITLTVISFLVMKMYQVICDHYG------VY 404 (478)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~-~~~~lg~~i~~~~~~~l~~~~g------~~ 404 (478)
...+...+...+.+..++. ..+....+.+|.+|++.|+++.|+.+ ....+|..++|.+.+.+.++.+ +.
T Consensus 306 ---~~~~~l~l~~~l~g~~~~~-~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 306 ---FGYALLFLSMIVYGCAFDF-FNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred ---hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 0001111112222222221 23445567899999999999999997 5678899999999999998854 34
Q ss_pred hHHHHHHHHHHHHHHHhheeecCCCCC
Q psy13206 405 LNFYIYSLGCIICGVLVYFIIPESKGK 431 (478)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~~~pEt~~~ 431 (478)
..+.+.++.+++.+++.+++.||+++.
T Consensus 382 ~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 556677777777778888888887544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-23 Score=204.68 Aligned_cols=325 Identities=14% Similarity=0.158 Sum_probs=199.8
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHH---HHhhhHHHHHHHHHHHhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLV---IFTKHVYVLYVVRFMQGLAMGIV 105 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~---~~a~~~~~l~~~R~l~G~~~g~~ 105 (478)
++++++.+.+++.+.+++|+.+++++.|++.||+|||+++..+..++.++++++ ++++|++.++++|+++|+|.|..
T Consensus 55 ~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~ 134 (438)
T PRK10133 55 AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCL 134 (438)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999885 56889999999999999999999
Q ss_pred hhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----------------------cchhh--------HHHH
Q psy13206 106 FTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----------------------VDYDT--------LAYV 155 (478)
Q Consensus 106 ~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----------------------~~~~~--------~~~~ 155 (478)
.+....++.|+.|+++|.+..+..+..+.+|..+++.++.. .+||. .++.
T Consensus 135 ~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~ 214 (438)
T PRK10133 135 ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMI 214 (438)
T ss_pred HhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887777888888888888777765421 12433 2221
Q ss_pred HHHHHH-H-HHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcc
Q psy13206 156 SLVIPV-V-FLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPA 233 (478)
Q Consensus 156 ~~~~~~-~-~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (478)
...+.. + .++.+..+||.|. ++ +.+ +++.+...+.++++++|.
T Consensus 215 ~~~v~~~~~~~~~~~~~p~~~~--------~~-----------~~~----------------~~~~~~~~~~~~ll~~~~ 259 (438)
T PRK10133 215 IVAIVLLVALLIMLTKFPALQS--------DN-----------HSD----------------AKQGSFSASLSRLARIRH 259 (438)
T ss_pred HHHHHHHHHHHHHHhcCCCCCc--------cc-----------ccc----------------ccccchhhhHHHHHhCch
Confidence 111111 1 1122233444220 00 000 000000112234444443
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHhHHHHH-Hhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHH
Q psy13206 234 NRRSLLIVQIVAVADVISGMSAVLPYASSTF-ART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFG 311 (478)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~ 311 (478)
.+...+.. .+. ..+......|.+..+ ++. +.+............++.+++.++++++.||+|||+++..+.++
T Consensus 260 ~~~~~l~~-~~~----~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~ 334 (438)
T PRK10133 260 WRWAVLAQ-FCY----VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI 334 (438)
T ss_pred HHHHHHHH-HHH----HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 33222111 111 112222233444333 222 22212222333456677788999999999999999988777655
Q ss_pred HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHH
Q psy13206 312 SGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVM 391 (478)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~ 391 (478)
..+.++... . .. .......+..++++.+ ...|.......|.+|++ .+++.++.. ....++.++|
T Consensus 335 ~~~~~~~~~---~-~~---------~~~~~~~~~l~glg~~-~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~ 398 (438)
T PRK10133 335 AMALCLISA---F-AG---------GHVGLIALTLCSAFMS-IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVT 398 (438)
T ss_pred HHHHHHHHH---H-cC---------ChHHHHHHHHHHHHHH-HHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHH
Confidence 544333211 1 11 0111112222222222 22355556667777654 677888776 4557888999
Q ss_pred HHHHHHHHhcc-cchHHHH
Q psy13206 392 KMYQVICDHYG-VYLNFYI 409 (478)
Q Consensus 392 ~~~~~l~~~~g-~~~~~~~ 409 (478)
.+.+.+.+..| ....+++
T Consensus 399 ~i~G~l~~~~g~~~~~~~v 417 (438)
T PRK10133 399 PVMGFVSDAAGNIPTAELI 417 (438)
T ss_pred HHHHHHHHhccchHHHHHH
Confidence 99999988876 4444543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=203.47 Aligned_cols=317 Identities=18% Similarity=0.153 Sum_probs=191.8
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK-HVYVLYVVRFMQGLAMGIVFT 107 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~-~~~~l~~~R~l~G~~~g~~~~ 107 (478)
++++++.+.+++.+++.+++++++++.|+++||+|||+.+.++.++..++.+++++++ +++.++++|+++|++.+ .++
T Consensus 31 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 109 (366)
T TIGR00886 31 DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFA 109 (366)
T ss_pred HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhH
Confidence 5788999999999999999999999999999999999999999999999999999999 99999999999999954 567
Q ss_pred hhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC--------------ccchhhHHHHH-HHHH-HHHHHhhcccc
Q psy13206 108 VAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP--------------YVDYDTLAYVS-LVIP-VVFLMTFIWMP 171 (478)
Q Consensus 108 ~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~--------------~~~~~~~~~~~-~~~~-~~~~~~~~~~p 171 (478)
....++.|+.|+++|++..++.....++|..+++.+++ ..+||+.+++. .... ++..+.+...+
T Consensus 110 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 189 (366)
T TIGR00886 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGA 189 (366)
T ss_pred hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 78889999999999999999888666666555544432 23688777332 2222 23333445567
Q ss_pred CChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhh
Q psy13206 172 ESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVIS 251 (478)
Q Consensus 172 ESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (478)
|+|+- +.++.+. + ..+..+.. + ++...+..+.++++..+.... .. .....
T Consensus 190 ~~~~~-----~~~~~~~-----~--~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~ 239 (366)
T TIGR00886 190 DTPPG-----KPATGKL-----S--FKGARWSV--G-----------TGALGDQLKVFRDRHTWILAL----LY-SVTFG 239 (366)
T ss_pred cCCcc-----cccchhc-----c--cccccccc--c-----------chhHHHHHHHHhccchhhHHH----HH-HHHHH
Confidence 76631 1000000 0 00000000 0 000002233343332221111 11 11111
Q ss_pred hhhHHHHhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccc
Q psy13206 252 GMSAVLPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYT 330 (478)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 330 (478)
....+..+.+.++.+..+ +.........+..+..+++.++.++++||+|||+.+..+......+..++.... ..
T Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~--- 314 (366)
T TIGR00886 240 SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL--VS--- 314 (366)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC--CC---
Confidence 222333445555544322 222223334445566778888999999999999877666554444333322110 00
Q ss_pred ccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHH
Q psy13206 331 VDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVI 386 (478)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg 386 (478)
. ...+...........+.+.+.+ ..+.+++|++| +.+|++.|+.+..+++|
T Consensus 315 --~-~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 315 --P-LSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred --c-chHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 0 0111112222233333343333 35677788887 68999999998877654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=200.19 Aligned_cols=330 Identities=14% Similarity=0.129 Sum_probs=208.5
Q ss_pred ccceeecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHH
Q psy13206 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLV 82 (478)
Q Consensus 3 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~ 82 (478)
|+..+..++.+|.+.+ ++++++.+.|++.+.+++++.+++++.|++.||+|||+++..+.++++++.++.
T Consensus 16 G~~~~~~~~l~~~~~~----------~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 16 GFANDITNPMVPQFQQ----------AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHhHHHHHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3444455566666543 577899999999999999999999999999999999999999999999998886
Q ss_pred HH---hhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCcc------------
Q psy13206 83 IF---TKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV------------ 147 (478)
Q Consensus 83 ~~---a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~------------ 147 (478)
.. .+|++.+++.|++.|+|.|...+....++.|..|+++|++..+..+...++|..+++.++..+
T Consensus 86 ~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 86 WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 54 368999999999999999999999999999999999999999998888888887776654321
Q ss_pred ------------------chhhHHHHHHHHHHHHHHhh--ccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHH
Q psy13206 148 ------------------DYDTLAYVSLVIPVVFLMTF--IWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLE 207 (478)
Q Consensus 148 ------------------~~~~~~~~~~~~~~~~~~~~--~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 207 (478)
+||+.+.+...+.++..+.. ..+||.++ + ++ +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~-------------~~-------~ 217 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------S-------------DA-------K 217 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------c-------------cc-------c
Confidence 36666654443333322222 22343211 0 00 0
Q ss_pred HHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCc--hhhHHHHHHHH
Q psy13206 208 LSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITP--DECTLLLGILV 285 (478)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 285 (478)
+ .....+..+.++++..+.... ...+... .......|.+.+..+.+...... ...........
T Consensus 218 --~--------~~~~~~~~~~~~~~~~~~~~l-~~f~yvg----~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~ 282 (410)
T TIGR00885 218 --Q--------ISFSASLSRLARIRHYREGVI-AQFFYVG----VQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIF 282 (410)
T ss_pred --c--------ccchhhHHHHHhChhHHHHHH-HHHHHHH----HHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Confidence 0 000001122333332222111 1111111 11223344454444332211111 11222233456
Q ss_pred HHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcc
Q psy13206 286 FLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGE 365 (478)
Q Consensus 286 ~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~E 365 (478)
.+|.++++++.||+++|+++....+++.+.+++... .+ +....+.+....++.+ ...|..+.+..+
T Consensus 283 ~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~----~~---------~~~~~~~l~~~glf~s-~~fp~i~sl~~~ 348 (410)
T TIGR00885 283 FISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF----AG---------GHVGLYCLTLCSAFMS-LMFPTIYGIALK 348 (410)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH----cC---------ChHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 688999999999999999887776666665444321 11 1112222223333332 333667778888
Q ss_pred cCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13206 366 FFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHY 401 (478)
Q Consensus 366 l~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~ 401 (478)
..+++.+..+.++.... +|+.+.|.+.+.+.|..
T Consensus 349 ~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 349 GLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred hhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 88877655555555544 89999999999999854
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=196.41 Aligned_cols=322 Identities=13% Similarity=0.094 Sum_probs=204.8
Q ss_pred chhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHH
Q psy13206 10 SPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVY 89 (478)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~ 89 (478)
++.+|.+.+ +++.++.+.+++.+++.++..+++++.|+++||+|||+++.++.++..++.+.+ .+++++
T Consensus 20 ~~~lp~l~~----------~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~ 88 (355)
T TIGR00896 20 GPLLPQIRS----------ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA 88 (355)
T ss_pred cccHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH
Confidence 456666664 578899999999999999999999999999999999999999999988888887 788999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----c--chhhHHHHHHHHHHHH
Q psy13206 90 VLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----V--DYDTLAYVSLVIPVVF 163 (478)
Q Consensus 90 ~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~--~~~~~~~~~~~~~~~~ 163 (478)
.+++.|++.|++.|...+....++.|+.| ++|+++.+..+....+|..+++.++.. . .||..+.......++.
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999888899999987 589999999988888887776655432 1 2665554333222221
Q ss_pred HHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHH
Q psy13206 164 LMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQI 243 (478)
Q Consensus 164 ~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (478)
...++||+++ +. +++. .......++.++++..+. .. .
T Consensus 168 --~~~~~~~~~~------~~-------------~~~~------------------~~~~~~~~~~~~~~~~~~---~~-~ 204 (355)
T TIGR00896 168 --LLAWIPQVRR------RV-------------AANQ------------------TTTRLTPVRIWRSPLAWQ---VT-V 204 (355)
T ss_pred --HHHHhhhhcc------cc-------------CCCC------------------CCCCCCCchhhcCHhHHH---HH-H
Confidence 2233444321 00 0000 000011222333222211 11 1
Q ss_pred HHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcC-CchhHHHhhHHHHHHHHHHHHH
Q psy13206 244 VAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTG-RRPLLLVSCFGSGISQLIAGTY 322 (478)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~G-Rr~~l~~~~~~~~i~~~~~~~~ 322 (478)
........+.....|.+.++.+.+.+............++.++++++.+++.||++ ||+.+..+.++.+++.+.+...
T Consensus 205 -~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (355)
T TIGR00896 205 -FFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA 283 (355)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh
Confidence 11111222333445666666544333223334445567778899999999999994 5555555555555544332210
Q ss_pred HhhcccccccccccchHHHHHHHHHHHHHHhccccc---chhhhc-ccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13206 323 YLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPL---VPTLQG-EFFPSNTRGLAGGVTTITLTVISFLVMKMYQVIC 398 (478)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~---~~~~~~-El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~ 398 (478)
.. ... ... ...++.+.+.. ...... +..+++.+++..++.+..+.++..++|.+.+.+.
T Consensus 284 ---~~---------~~~-~~~----~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~ 346 (355)
T TIGR00896 284 ---PM---------HGL-WAW----ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLH 346 (355)
T ss_pred ---hh---------hHH-HHH----HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011 111 12233333332 223333 4445677899999999999999999999999999
Q ss_pred Hhcccc
Q psy13206 399 DHYGVY 404 (478)
Q Consensus 399 ~~~g~~ 404 (478)
++.|.+
T Consensus 347 ~~~g~~ 352 (355)
T TIGR00896 347 DISGNW 352 (355)
T ss_pred HHhccc
Confidence 988754
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=197.78 Aligned_cols=331 Identities=12% Similarity=0.068 Sum_probs=206.9
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.|++.+++.+++++++++.|+++||+|||+++.++.++..++.++.+++++++.++++|++.|.+.+...++
T Consensus 37 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 116 (395)
T PRK10054 37 QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTV 116 (395)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999988888899
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc---cchhhHHHHHHHHHHHHH-HhhccccCChHHHHHcCCHH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY---VDYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIMKGRDV 184 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~---~~~~~~~~~~~~~~~~~~-~~~~~~pESp~~l~~~~~~~ 184 (478)
...+..|..|+++|++..++.....++|..+++.++.. .+|+..++......++.. +...++||.++ +
T Consensus 117 ~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~--------~ 188 (395)
T PRK10054 117 LKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEK--------A 188 (395)
T ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcccc--------c
Confidence 99999999999999999999888888888877766543 368877776554444432 22333444321 0
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHH
Q psy13206 185 DARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTF 264 (478)
Q Consensus 185 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (478)
+ +++ .+ + ..+.++.++++..+.......+.... ......+.+...
T Consensus 189 ~-----------~~~----~~----~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~ 233 (395)
T PRK10054 189 I-----------ATE----TG----S-----------VWSPSVLLQDKALLWFTCSGFLASFV-----SGAFASCISQYV 233 (395)
T ss_pred c-----------ccc----hh----h-----------hhhhhhhccCceehHHHHHHHHHHHH-----HHHhhhhHHHHH
Confidence 0 000 00 0 00012233333222222111111111 111111222222
Q ss_pred HhcCCCCCCchhhHHHHH---HHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHH
Q psy13206 265 ARTEGSLITPDECTLLLG---ILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPL 341 (478)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (478)
...............+.. +...+...+.+++.||.+||+.+..++...++....... ..+ ..+...
T Consensus 234 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~--------~~~~~~ 302 (395)
T PRK10054 234 MVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIF---SGN--------SLLLWG 302 (395)
T ss_pred HHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHH---cch--------HHHHHH
Confidence 111111112222222222 222334456788999999999887776555554433221 000 011111
Q ss_pred HHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy13206 342 ISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCI 415 (478)
Q Consensus 342 ~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~ 415 (478)
+....+..+.. ...|....+..+..|++.|++..+..+ .+++|..++|.+.+.+.++.|....+.+.+....
T Consensus 303 ~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~ 374 (395)
T PRK10054 303 MSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIV 374 (395)
T ss_pred HHHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHH
Confidence 22222222221 123445567788899999999988655 6778999999999999999886655555443333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=195.91 Aligned_cols=345 Identities=12% Similarity=0.119 Sum_probs=211.2
Q ss_pred ccCcchhhHHHHHHHHHHHhhhhhhhhhhccc-----CchhH-HHhhhHHHHHHHHHHHHh---hhHHHHHHHHHHHhhh
Q psy13206 31 EMTSAESSWVVSIIELGNLVTPIPIGFLVDYV-----GRKPC-LLTTGPLYIISWLLVIFT---KHVYVLYVVRFMQGLA 101 (478)
Q Consensus 31 ~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~-----GRr~~-l~~~~~l~~i~~~~~~~a---~~~~~l~~~R~l~G~~ 101 (478)
+.+..+.+.+ +.....+ ++++++|+++||+ |||+. +..+.+...++..+.++. ++++.+.+.|++.|++
T Consensus 43 g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~ 120 (491)
T PRK11010 43 NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFC 120 (491)
T ss_pred CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 5677777776 3333433 6899999999999 99986 667777777777777775 4788999999999999
Q ss_pred hhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----C-ccchhhHHHHHHHHHHHHHHhhccccCChHH
Q psy13206 102 MGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----P-YVDYDTLAYVSLVIPVVFLMTFIWMPESPYF 176 (478)
Q Consensus 102 ~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~-~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~ 176 (478)
.+...+...+++.|++|+++||+..++...+..+|.++++.++ . ..+||..+++.....++..+...++||+++.
T Consensus 121 ~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~ 200 (491)
T PRK11010 121 SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDT 200 (491)
T ss_pred HHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 9999999999999999999999999999998888887776443 3 4589998887665555554444457887531
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHH
Q psy13206 177 LIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAV 256 (478)
Q Consensus 177 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (478)
. .+ +++ .. + ....++++.++++..+..+..... .. .+....
T Consensus 201 ~---~~--------------~~~----~~-------~------~~~~~l~~~~~~~~~~~~ll~~~l--~~---~~~~~~ 241 (491)
T PRK11010 201 I---PV--------------PKT----LE-------Q------AVVAPLRDFFGRNNAWLILLLIVL--YK---LGDAFA 241 (491)
T ss_pred c---cc--------------ccc----hh-------h------hHHHHHHHHHcCcCHHHHHHHHHH--HH---HHHHHH
Confidence 0 00 000 00 0 001123344443322221111111 11 111112
Q ss_pred HHhHHHHHHhcCCCCCCchhhHHH----HHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccc
Q psy13206 257 LPYASSTFARTEGSLITPDECTLL----LGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVD 332 (478)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 332 (478)
..+.+.++.+..+ .+....+.+ ..++.+++.+++|+++||+|||+.+..+.++.++..+....... ..
T Consensus 242 ~~~~~~~l~~~~G--~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~-~~----- 313 (491)
T PRK11010 242 MSLTTTFLIRGVG--FDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI-TD----- 313 (491)
T ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-cc-----
Confidence 2233333332211 233333332 23466788999999999999998776655544443322211111 10
Q ss_pred ccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy13206 333 LSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSL 412 (478)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~ 412 (478)
+..+.......+..+.++.+. +..+++..++.|++.+++..++.+....++..+++.+.+.+.+..|+...|.+.++
T Consensus 314 --~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~ 390 (491)
T PRK11010 314 --KNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVA 390 (491)
T ss_pred --ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 011111111222222223223 23467778899999999999999999999999999999999998886554544444
Q ss_pred HHHHHHHHhheeecCC
Q psy13206 413 GCIICGVLVYFIIPES 428 (478)
Q Consensus 413 ~~~l~~~~~~~~~pEt 428 (478)
. .+.+++...+.+++
T Consensus 391 ~-~l~~l~~~~~~~~~ 405 (491)
T PRK11010 391 A-AVPGLLLLLVCRQT 405 (491)
T ss_pred H-HHHHHHHHHHHHhc
Confidence 4 44444444444554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=222.91 Aligned_cols=319 Identities=13% Similarity=0.038 Sum_probs=197.0
Q ss_pred CcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHH---HHhhhHHHHHHHHHHHhhhhhhhhhhh
Q psy13206 33 TSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLV---IFTKHVYVLYVVRFMQGLAMGIVFTVA 109 (478)
Q Consensus 33 ~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~---~~a~~~~~l~~~R~l~G~~~g~~~~~~ 109 (478)
+....+++.++++++++++++++|+++||+|||++++++.++.++++++. ..+++++.++++|+++|++.|...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 44557999999999999999999999999999999999887766655544 345789999999999999999999999
Q ss_pred hhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCcc------------c-hhhHHHHHH-HHHHHHHHhhccccCChH
Q psy13206 110 PMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV------------D-YDTLAYVSL-VIPVVFLMTFIWMPESPY 175 (478)
Q Consensus 110 ~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~------------~-~~~~~~~~~-~~~~~~~~~~~~~pESp~ 175 (478)
.+++.|++|+++|+++.++.+....+|.++++.++..+ . |++...+.. ...++.++....+||+|.
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 99999999999999999999999988888887776432 1 222222222 222333344455788874
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhH
Q psy13206 176 FLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSA 255 (478)
Q Consensus 176 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (478)
+...+++ .... . ...+ ....+..+++++..+..++...+.. .....
T Consensus 205 ~~~~~~~--------------~~~~---~--~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~ 250 (1146)
T PRK08633 205 AAPEVFD--------------KKKY---L--FPKL----------LWRNLKLLRSDRVLWLAIIGLSYFW-----FISQL 250 (1146)
T ss_pred CCccccc--------------cccc---c--cHHH----------HHHHHHHHhcCcHHHHHHHHHHHHH-----HHHHH
Confidence 3211000 0000 0 0000 0112333333332222211111111 11122
Q ss_pred HHHhHHHHHHhc-CCCCC-CchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccc
Q psy13206 256 VLPYASSTFART-EGSLI-TPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDL 333 (478)
Q Consensus 256 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 333 (478)
...+.+.++... +.+.. .........+++.+++.++.+++.||+++|+.+.++.++.+++.+++....
T Consensus 251 ~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~---------- 320 (1146)
T PRK08633 251 AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP---------- 320 (1146)
T ss_pred HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh----------
Confidence 233344444332 22212 223334445666778889999999999999888777666665544432110
Q ss_pred cccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13206 334 SKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVIC 398 (478)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~ 398 (478)
..+...+..++++++.+. ..+...++..+..|++.||++.|+.+.+..++..+++.+.+.+.
T Consensus 321 --~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 321 --SLASVLVLFFLFGFSAGL-FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred --hHHHHHHHHHHHHHHHHH-hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112222222222222 22345677889999999999999999999888876665554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-22 Score=195.37 Aligned_cols=317 Identities=12% Similarity=0.088 Sum_probs=199.3
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+.+.++.+.|++.+...++..+.+++.|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.|...+.
T Consensus 40 ~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~ 119 (400)
T PRK11646 40 QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPP 119 (400)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc---cchhhHHHHHHHHHHHHH-HhhccccCChHHHHHcCCHH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY---VDYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIMKGRDV 184 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~---~~~~~~~~~~~~~~~~~~-~~~~~~pESp~~l~~~~~~~ 184 (478)
..+++.|+.|+++|+++.++......+|..+++.++.. .+|++.+++.....++.. +...++||.+. +
T Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~------~-- 191 (400)
T PRK11646 120 RTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYKL------S-- 191 (400)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcccc------c--
Confidence 99999999999999999999988888887777666543 467777766544433322 22233454210 0
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHH
Q psy13206 185 DARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTF 264 (478)
Q Consensus 185 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (478)
+.. .+ ...++++.++++..+..... ...+ .........+.|...
T Consensus 192 ------------~~~------~~-------------~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~p~~~ 235 (400)
T PRK11646 192 ------------TVR------TP-------------VREGMTRVLRDKRFVTYVLT--LTGY---YMLAVQVMLMLPIMV 235 (400)
T ss_pred ------------ccc------hh-------------hHHHHHHHHcCchHHHHHHH--HHHH---HHHHHHHHHhhhhhH
Confidence 000 00 00112233333322211111 1111 111111122344444
Q ss_pred HhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhh-hcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHH
Q psy13206 265 ARTEGSLITPDECTLLLGILVFLSTFPTAFLVD-RTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLIS 343 (478)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~D-r~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (478)
.+.+...........+.++....+..+.+++.| |++.|+.+..+.++.++..+.++.. + ..+.....
T Consensus 236 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----~--------~~~~~~~~ 303 (400)
T PRK11646 236 NDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----S--------NLQQLFTL 303 (400)
T ss_pred HhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----h--------hHHHHHHH
Confidence 433322111111122223333444444455555 4665665555555555444332211 1 01111111
Q ss_pred HHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13206 344 ITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG 402 (478)
Q Consensus 344 ~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g 402 (478)
...+....+ ...|....+..|..|++.||++.|+.+....+|..++|.+.+.+.++.+
T Consensus 304 ~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 304 ICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 122222222 1234556788899999999999999999999999999999999988753
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=191.54 Aligned_cols=337 Identities=13% Similarity=0.090 Sum_probs=195.6
Q ss_pred ccccCcchhhHHHHHH-HHHHHhhhhhhhhhhcccCchhHH-HhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSII-ELGNLVTPIPIGFLVDYVGRKPCL-LTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVF 106 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~-~~g~~ig~~~~G~l~Dr~GRr~~l-~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~ 106 (478)
+++.++.+.|++.+.+ ..+.++++++.|+ +||+|||+.+ ..+.++..++..+.+++++++.+++.+.+.|...+...
T Consensus 45 ~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 123 (393)
T PRK15011 45 EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTAN 123 (393)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 5788999999997765 5577777766677 9999999875 45566666778888899999988766655554556777
Q ss_pred hhhhhhhhhccccccc--hhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHHH-HhhccccCChHHHHH
Q psy13206 107 TVAPMYIGEISGAKCR--GALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIM 179 (478)
Q Consensus 107 ~~~~~~~~E~~p~~~R--g~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~~-~~~~~~pESp~~l~~ 179 (478)
+....++.|+.|++.| +...++.+...++|.++++.++ ...+||..++......++.. +...++||+|+-
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~--- 200 (393)
T PRK15011 124 PQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE--- 200 (393)
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---
Confidence 8888888888877766 3445666777777777776665 34589988776655544433 334456776520
Q ss_pred cCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHh
Q psy13206 180 KGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPY 259 (478)
Q Consensus 180 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (478)
+++ .++ +. ...+ ++++....... .... .......+..+
T Consensus 201 ~~~--------------~~~-------~~--------------~~~~---~~~~~~~~~~~---~~~~-~~~~~~~~~~~ 238 (393)
T PRK15011 201 LPL--------------ATG-------TL--------------EAPR---RNRRDTLLLFV---ICTL-MWGTNSLYIIN 238 (393)
T ss_pred Ccc--------------ccc-------cc--------------cccc---cccccHHHHHH---HHHH-HHHHHHHHHHH
Confidence 000 000 00 0000 00111111111 1111 11112222334
Q ss_pred HHHHHHhcCCCCCCchhhHH---HHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccccccc
Q psy13206 260 ASSTFARTEGSLITPDECTL---LLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKF 336 (478)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 336 (478)
.+.++.+..+ .++...+. ...+..+++.++.|+++||+|||+.+..+.+...+..... .. .+ .
T Consensus 239 ~p~~l~~~~~--~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~---~~-~~--------~ 304 (393)
T PRK15011 239 MPLFIINELH--LPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM---LM-AH--------S 304 (393)
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HH-Hh--------h
Confidence 4444433222 12222222 2334456678889999999999998766554443332211 11 11 0
Q ss_pred chHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy13206 337 NWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCII 416 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l 416 (478)
.+..+.......+.++... +..+.+..|.+|+ .||++.++.+....+|..+++.+.+.+.+..++...+.+.++ ..+
T Consensus 305 ~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~-~~~ 381 (393)
T PRK15011 305 PAILLGLQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALV-MII 381 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHH
Confidence 1111111111112222211 2234567898886 499999999988999999999999999988876665555444 444
Q ss_pred HHHHhheeecCC
Q psy13206 417 CGVLVYFIIPES 428 (478)
Q Consensus 417 ~~~~~~~~~pEt 428 (478)
.+++.++..||+
T Consensus 382 ~~~~~~~~~~~~ 393 (393)
T PRK15011 382 ATLFCLLRIKDV 393 (393)
T ss_pred HHHHHHHhhcCC
Confidence 455555555654
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=196.94 Aligned_cols=148 Identities=19% Similarity=0.288 Sum_probs=131.0
Q ss_pred CcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhh
Q psy13206 27 ETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVF 106 (478)
Q Consensus 27 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~ 106 (478)
+..+|+++++.|++.+.+.+++.+.++++|+++|||-||+++.++..+|.+++++++++..||++.++|.+.|+|++...
T Consensus 60 ~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~ 139 (493)
T KOG1330|consen 60 QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYS 139 (493)
T ss_pred HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhc
Confidence 44779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cc-hhhHHHHHHHHHHHH-HHhhccccCCh
Q psy13206 107 TVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VD-YDTLAYVSLVIPVVF-LMTFIWMPESP 174 (478)
Q Consensus 107 ~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~-~~~~~~~~~~~~~~~-~~~~~~~pESp 174 (478)
|+++.+++|.+|..+|++..++++....+|..++++.|.. .+ ||+-++...++.+++ ++.+++.+|.+
T Consensus 140 ~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 140 PIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred ccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999999999888887753 23 776666555555443 45566677764
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=190.30 Aligned_cols=146 Identities=19% Similarity=0.265 Sum_probs=123.7
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+++.+++.++..+++++.|+++||+|||+.+.++.++..++.+++.+++|++.+++.|+++|++.+...+.
T Consensus 37 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 116 (394)
T PRK11652 37 DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVM 116 (394)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHH-HHhhccccCCh
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVF-LMTFIWMPESP 174 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~-~~~~~~~pESp 174 (478)
...+..|..++++|++..+..+.+...|..+++.++ ...+||+.+++.....++. .+...++||+|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 117 ARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 888999999999999988888877777766665544 3457888877665544433 33345578765
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-21 Score=189.54 Aligned_cols=351 Identities=14% Similarity=0.074 Sum_probs=183.7
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHH---HhhhHH-HHHHHHHHHhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVI---FTKHVY-VLYVVRFMQGLAMGI 104 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~---~a~~~~-~l~~~R~l~G~~~g~ 104 (478)
++++++.+.|++.+++.+++.+++++.|+++||+|||++++++..+..++..... .++... ......++.|+..|.
T Consensus 40 ~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (420)
T PRK09528 40 INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGF 119 (420)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4788999999999999999999999999999999999999887766655443221 111111 111222333333333
Q ss_pred hhhhhhhhhhhccc--cccchhhhHHHHHHHHHhHHHHhhcCCc---cchhhHHHHHHHHHHHHHHhhcc-ccCChHHHH
Q psy13206 105 VFTVAPMYIGEISG--AKCRGALSTFFIGMLNTGILLEYTVGPY---VDYDTLAYVSLVIPVVFLMTFIW-MPESPYFLI 178 (478)
Q Consensus 105 ~~~~~~~~~~E~~p--~~~Rg~~~~~~~~~~~~G~~l~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~-~pESp~~l~ 178 (478)
.+......+.++.+ .++||+..+......++|..+++.++.. .+|+..++......++..+...+ .||.|+-..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (420)
T PRK09528 120 GFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPSTAK 199 (420)
T ss_pred hhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccchhh
Confidence 33333223333333 2345555555555555555555444332 36777776655554444433333 333321000
Q ss_pred HcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhh-HHH
Q psy13206 179 MKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMS-AVL 257 (478)
Q Consensus 179 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 257 (478)
.+++ + .+ ++++....+..+.++++..+...+........ ..... ...
T Consensus 200 ~~~~--~------------~~----------------~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~--~~~~~~~~~ 247 (420)
T PRK09528 200 VANA--L------------GA----------------NASAVSLKDALALLKLPKFWFLVLYVIGVACF--YDVFDQQFP 247 (420)
T ss_pred hccc--h------------hc----------------ccccccHHHHHHHccCCCeEeehHHHHHHHHH--HHHHHHHHH
Confidence 0000 0 00 00000011223344444333222211111110 01111 111
Q ss_pred HhHHHHHHhcCCCCCCchhhH---HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccccc
Q psy13206 258 PYASSTFARTEGSLITPDECT---LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLS 334 (478)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (478)
.|....+...+ .+....+ .+..+...++.++.+++.||+|||+.+..+.++.++..+..+. .+
T Consensus 248 ~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~----~~------- 313 (420)
T PRK09528 248 NFFASFFATPE---QGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF----AT------- 313 (420)
T ss_pred HHHHHHHhccC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh----cc-------
Confidence 22222222111 1222222 3334556688889999999999999887777766665444321 11
Q ss_pred ccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy13206 335 KFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGV-TTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLG 413 (478)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~-~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~ 413 (478)
..+.......+....++. ..+....+.+|.+|++.|++..+. .+....+|..+++.+.+.+.+..|....+...++.
T Consensus 314 -~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~ 391 (420)
T PRK09528 314 -GPLEVSILKLLHAFEVPF-LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGI 391 (420)
T ss_pred -cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 112111111111111111 112233577888999999988766 56778899999999999999988877777776766
Q ss_pred HHHHHHHhheeecC
Q psy13206 414 CIICGVLVYFIIPE 427 (478)
Q Consensus 414 ~~l~~~~~~~~~pE 427 (478)
.++..++.++.+++
T Consensus 392 ~~i~~~~~~~~~~~ 405 (420)
T PRK09528 392 VLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHhcC
Confidence 66555555555444
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=184.37 Aligned_cols=343 Identities=11% Similarity=0.051 Sum_probs=194.8
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHH---Hh-----hhHHHHHHHHHHHhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVI---FT-----KHVYVLYVVRFMQGL 100 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~---~a-----~~~~~l~~~R~l~G~ 100 (478)
+++.++.+.+++.+++.++..++++++|+++||+|||+.+..+.....++..... +. ..+..+++.|++.|+
T Consensus 32 ~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 111 (396)
T TIGR00882 32 VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGF 111 (396)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999887766655443221 11 234456778999999
Q ss_pred hhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC---ccchhhHHHHHHHHHHHHHHhhc-cccCChHH
Q psy13206 101 AMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP---YVDYDTLAYVSLVIPVVFLMTFI-WMPESPYF 176 (478)
Q Consensus 101 ~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~-~~pESp~~ 176 (478)
+.+...+....++.|..+++ +...+......++|..+++.++. ..+|+..++.....+++..+..+ ..||+|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 189 (396)
T TIGR00882 112 VFSAGAGAIEAYIEKVSRNS--NFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSS 189 (396)
T ss_pred HhccchhhHHHHHHHhhhhc--ccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 99998988888887765433 22223333333444444444432 24788888776666555443332 34555421
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHH
Q psy13206 177 LIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAV 256 (478)
Q Consensus 177 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (478)
++..+. .+ ++ ++++...+..+.++++..+...... ... ...+...
T Consensus 190 -------~~~~~~----~~-~~------------------~~~~~~~~~~~~l~~~~~~~~~l~~----~~~-~~~~~~~ 234 (396)
T TIGR00882 190 -------ATVANA----LG-AN------------------ASAFSLKLALELFRQRKFWMFVLYV----VGV-ACVYDVF 234 (396)
T ss_pred -------hhhhcc----cc-cc------------------cCCCCHHHHHHHHcCCcHHHHHHHH----HHH-HHHHHHH
Confidence 000000 00 00 0001112344455544322211111 111 1111111
Q ss_pred HHhHHHHHHhcCC-CCCCchhh---HHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccc
Q psy13206 257 LPYASSTFARTEG-SLITPDEC---TLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVD 332 (478)
Q Consensus 257 ~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 332 (478)
..+.+..+..... ...+.... ..+..+...++.+..+++.||+|||+.+..+.++.++....... .+
T Consensus 235 ~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~----~~----- 305 (396)
T TIGR00882 235 DQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF----AT----- 305 (396)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh----cC-----
Confidence 1122222222111 11122222 23334556667788899999999999888777666654433211 11
Q ss_pred ccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy13206 333 LSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGV-TTITLTVISFLVMKMYQVICDHYGVYLNFYIYS 411 (478)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~-~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~ 411 (478)
..+............+... ......+..+.+|++.++++.+. .+....+|+.+++.+.+++.+..|....|++.+
T Consensus 306 ---~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~ 381 (396)
T TIGR00882 306 ---TALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLG 381 (396)
T ss_pred ---ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHH
Confidence 1121111111112111110 01122356778899999888776 567889999999999999999888777787777
Q ss_pred HHHHHHHHHh
Q psy13206 412 LGCIICGVLV 421 (478)
Q Consensus 412 ~~~~l~~~~~ 421 (478)
+..++.+++.
T Consensus 382 ~~~~i~~~~~ 391 (396)
T TIGR00882 382 CIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHH
Confidence 7766666554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-21 Score=185.08 Aligned_cols=329 Identities=13% Similarity=0.062 Sum_probs=197.2
Q ss_pred ccceeecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhccc-----CchhH-HHhhhHHHH
Q psy13206 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV-----GRKPC-LLTTGPLYI 76 (478)
Q Consensus 3 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~-----GRr~~-l~~~~~l~~ 76 (478)
|...+.-++.+|.+.+ ++++|.+|.+++.+. .+...+ ++++|+++||+ ||||. ++.+.++.+
T Consensus 1 ~~~~~~~~~~~~~~~~----------~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~ 68 (356)
T TIGR00901 1 GLPLGLVGNTLPYWLR----------SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLL 68 (356)
T ss_pred CCCchhHHhHHHHHHH----------HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHH
Confidence 4556667777888876 468899999999755 444444 99999999998 99997 467777787
Q ss_pred HHHHHHHHh---hhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----Cccc-
Q psy13206 77 ISWLLVIFT---KHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVD- 148 (478)
Q Consensus 77 i~~~~~~~a---~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~- 148 (478)
++.++.++. .+++.+.+..++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++ ...+
T Consensus 69 ~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~ 148 (356)
T TIGR00901 69 SLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFA 148 (356)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 887777777 46677888888999999999999999999999999999999999988888888777665 3345
Q ss_pred -------hhhHHHHHHHHHHHHHHhhc-cccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhc
Q psy13206 149 -------YDTLAYVSLVIPVVFLMTFI-WMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMK 220 (478)
Q Consensus 149 -------~~~~~~~~~~~~~~~~~~~~-~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (478)
||..+++..+..++..+... ..||+++. + +.+ +.+ +++
T Consensus 149 ~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~-----~--------------~~~-----~~~----~~~------ 194 (356)
T TIGR00901 149 NTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED-----A--------------SVP-----KPL----TQA------ 194 (356)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc-----c--------------ccc-----hhH----HHH------
Confidence 88888766655444443333 34664310 0 000 000 000
Q ss_pred cchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHH---H-HHHHHHhhhhhHhh
Q psy13206 221 LSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLL---G-ILVFLSTFPTAFLV 296 (478)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~l~ 296 (478)
...++++.++++..++ ........+... ........+.+....+.+ .++.....+. + +..+++.++++++.
T Consensus 195 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g---~~~~~~g~~~~~~~~~~~~~g~~~~g~l~ 269 (356)
T TIGR00901 195 VLKPIREFFQRKNMIQ-ALLLLLLIVLYK-LGDSAATVLTTLFLLDMG---FSKEEIALVAKINGLLGAILGGLIGGIIM 269 (356)
T ss_pred HHHHHHHHHHhcCchH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC---CCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 0112333333332111 222111111111 122233334444444422 2333333332 2 34567888999999
Q ss_pred hhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhh
Q psy13206 297 DRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAG 376 (478)
Q Consensus 297 Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~ 376 (478)
||+|||+.+..+.++.++...+........+..+.+ ....+..........+..+ ...+....+..|.+|++.||+..
T Consensus 270 ~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~ 347 (356)
T TIGR00901 270 QPLNILYALLLFGIVQALTNAGFVWLASNGHHDGIT-FPHLLMLFLTITLEAVTGG-LGTVAFVAFLSKLSNPKFGATQM 347 (356)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc-cchHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhcCCCccHHHH
Confidence 999999988777776665544332211100000000 0001111111111122222 12345677889999999999999
Q ss_pred HHHHHHHH
Q psy13206 377 GVTTITLT 384 (478)
Q Consensus 377 g~~~~~~~ 384 (478)
|+.+...+
T Consensus 348 g~~~~~~~ 355 (356)
T TIGR00901 348 ALLSSLSA 355 (356)
T ss_pred HHHHHHHh
Confidence 99876543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-20 Score=182.67 Aligned_cols=350 Identities=14% Similarity=0.129 Sum_probs=211.6
Q ss_pred ccceeecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhccc-----Cchh-HHHhhhHHHH
Q psy13206 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV-----GRKP-CLLTTGPLYI 76 (478)
Q Consensus 3 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~-----GRr~-~l~~~~~l~~ 76 (478)
|...|+..+.+|.+.+ +.+.+.++.|++..+... .+.++++|+++||+ |||| .+.++.++.+
T Consensus 12 ~~~~~~~~~~~~~~l~----------~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~ 79 (402)
T PRK11902 12 GLPLALTSGTLQAWMT----------VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLA 79 (402)
T ss_pred hhhHHHHHHHHHHHHH----------HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHH
Confidence 5566777778888875 258899999999777776 69999999999999 8876 6888888888
Q ss_pred HHHHHHHHh---hhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----C-ccc
Q psy13206 77 ISWLLVIFT---KHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----P-YVD 148 (478)
Q Consensus 77 i~~~~~~~a---~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~-~~~ 148 (478)
++..+.++. .+++.+++..++.|+..+...+...+++.|+.|+++|+++.+....+..+|.+++..++ . ..+
T Consensus 80 l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g 159 (402)
T PRK11902 80 ASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG 159 (402)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 888888887 35788899999999999999999999999999999999999999888888887766543 2 348
Q ss_pred hhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHh
Q psy13206 149 YDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDI 228 (478)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (478)
||..+++.....++..+...++||+++.. ++ ++ .... + ...++++.
T Consensus 160 w~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~---------------~~---~~~~---~----------~~~~~~~l 205 (402)
T PRK11902 160 WGNTYLLMAGLMLAGALTTLWAPEPEVPA---RP---------------PR---SLGE---A----------VVGPLRDF 205 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc---------------cc---hhHH---H----------HHHHHHHH
Confidence 99888876665555555555677765310 00 00 0000 0 01123445
Q ss_pred hcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHH---H-HHHHHHhhhhhHhhhhcCCchh
Q psy13206 229 ISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLL---G-ILVFLSTFPTAFLVDRTGRRPL 304 (478)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~l~Dr~GRr~~ 304 (478)
+++|..+..+....+....... . ..+.+..+.+..+ .++...+.+. + ...+++.++++++.||+|||+.
T Consensus 206 ~~~~~~~~~l~~~~l~~~~~~~--~---~~~~~~~l~~~~G--~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~ 278 (402)
T PRK11902 206 FSRRGAWALLLLIVLYKLGDAF--A---GSLSTTFLIRGAG--FSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS 278 (402)
T ss_pred HhCcCHHHHHHHHHHHHhHHHH--H---HHHHHHHHHHhcC--CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5544333222222221111111 1 1122222222222 2344444443 2 2356788899999999999988
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc---cccchhhhcccCCccccchhhHHHHH
Q psy13206 305 LLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL---GPLVPTLQGEFFPSNTRGLAGGVTTI 381 (478)
Q Consensus 305 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---g~~~~~~~~El~p~~~Rg~~~g~~~~ 381 (478)
+..+..+..+..+........ + +..+..........+..+.+. ......++++.+|.+.+ ++.+.
T Consensus 279 l~~~~~~~~l~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 346 (402)
T PRK11902 279 LMLFGVLQAVSNLGYWVLAVT-P-------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSA 346 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-C-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHH
Confidence 766655544443322111110 0 011211111111112222222 22334566777776554 44444
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy13206 382 TLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIIC 417 (478)
Q Consensus 382 ~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~ 417 (478)
...++...++.+.+.+.+..|+...|.+.+..+++.
T Consensus 347 ~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~ 382 (402)
T PRK11902 347 LASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPG 382 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 455666656678888999998765555544444443
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=194.27 Aligned_cols=259 Identities=15% Similarity=0.163 Sum_probs=183.5
Q ss_pred CcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhh
Q psy13206 27 ETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVF 106 (478)
Q Consensus 27 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~ 106 (478)
..|.++...+.+++.++|++|+++|+++.|.+.||+.-.+.+..+.+.+.+.++++....|++.+++.|++.|+..++.+
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGW 152 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence 44778889999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred hhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----------ccchhhHHHHHHHHHHHH-HHhhccccCChH
Q psy13206 107 TVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----------YVDYDTLAYVSLVIPVVF-LMTFIWMPESPY 175 (478)
Q Consensus 107 ~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----------~~~~~~~~~~~~~~~~~~-~~~~~~~pESp~ 175 (478)
|....+++-|..+++||...+++.....+|.+++.++.. ..+||+.|.+...+.++. ++.++++|+.|.
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 999999999999999999999999887777776666543 458999998877666554 467788999996
Q ss_pred --HHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhh
Q psy13206 176 --FLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGM 253 (478)
Q Consensus 176 --~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (478)
|...+.+.+-+ .++.+..+.. ...++.....+++.++++..+ ...+..++.. ...
T Consensus 233 ~~~fl~~~ek~~~---~~~~~~~~~~---------------~~~~~~~~~~~~~a~~dp~vw----~~~l~~~~~~-lv~ 289 (495)
T KOG2533|consen 233 KAWFLTDEEKELV---VERLRESPSG---------------GIENKFKWKGFKEALKDPGVW----PFSLCYFFLK-LVN 289 (495)
T ss_pred hccccchHHHHHH---HHHHHhccCC---------------CcccccCHHHHHHHHhchhHH----HHHHHHHHHh-hcc
Confidence 33221111101 1111110000 000001223455555554322 2222222222 223
Q ss_pred hHHHHhHHHHHHhcC-CCCCCchhhHHHHHHHHHHHhhhhhHhhhh----cCCchhHHHh
Q psy13206 254 SAVLPYASSTFARTE-GSLITPDECTLLLGILVFLSTFPTAFLVDR----TGRRPLLLVS 308 (478)
Q Consensus 254 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr----~GRr~~l~~~ 308 (478)
+.+..|.+.++.+.. .+..+++..+....++.+++.+++|+++|| ..+|......
T Consensus 290 ~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~ 349 (495)
T KOG2533|consen 290 YGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVF 349 (495)
T ss_pred ccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345566676666632 344566777788899999999999999999 4555444433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=178.37 Aligned_cols=342 Identities=10% Similarity=0.036 Sum_probs=205.7
Q ss_pred eecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHH----HhhhHHHHHHHHHH
Q psy13206 7 GWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCL----LTTGPLYIISWLLV 82 (478)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l----~~~~~l~~i~~~~~ 82 (478)
|...|.+|.+.+ +++.|..+.|++.+++.+...++++++|+++||+|||... ..+..+.. ...+
T Consensus 21 ~~~~p~l~~~l~----------~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~--~~~~ 88 (382)
T TIGR00902 21 GIFLPFFPAWLK----------GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFA--AAFS 88 (382)
T ss_pred HHHHHHHHHHHH----------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH--HHHH
Confidence 445566777775 3678999999999999999999999999999999985433 22222222 2345
Q ss_pred HHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHH
Q psy13206 83 IFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLV 158 (478)
Q Consensus 83 ~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~ 158 (478)
.++++++.+++.|.++|.+.+...|...++..|+ +++|++..+......++|.++++.++. ..+||..++....
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~ 166 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA 166 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 5778999999999999999999899988888775 467888888877777777777766543 3578887765543
Q ss_pred HHHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHH
Q psy13206 159 IPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSL 238 (478)
Q Consensus 159 ~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (478)
...+.++.+ .++|++. +.+ ++ ++ ++.+...++.+.+++|+.+..+
T Consensus 167 ~~~~~~~~~-~~~~~~~----~~~---------------~~-~~--------------~~~~~~~~~~~~l~~~~~~~~l 211 (382)
T TIGR00902 167 GLAFMLIGF-LIKPTIP----PKD---------------AI-PE--------------DESQGDSAFIALLKNPMNLRFL 211 (382)
T ss_pred HHHHHHHHH-HcCCCCC----CCc---------------cc-cc--------------cccccchhHHHHHcChHHHHHH
Confidence 322222222 2333320 000 00 00 0000011234455443322222
Q ss_pred HHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHH
Q psy13206 239 LIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLI 318 (478)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~ 318 (478)
... +. ..........+.+..+.+.+.+.........+..+..+++....+++.||+|+|+++..+.+..++....
T Consensus 212 ~~~----~l-~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~ 286 (382)
T TIGR00902 212 AAV----CL-IQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAI 286 (382)
T ss_pred HHH----HH-HHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 111 11 1122333444555555543332222222222344455667777889999999999988887777776554
Q ss_pred HHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHH-HHHHHHHHHHHHHHHH
Q psy13206 319 AGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTI-TLTVISFLVMKMYQVI 397 (478)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~-~~~lg~~i~~~~~~~l 397 (478)
.+.. + ..+.....-..-++.++.. .+....++++. |++.|+++.++.+. ...+|..+++.+.+.+
T Consensus 287 ~~~~----~--------~~~~~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l 352 (382)
T TIGR00902 287 IGAI----E--------AFPLIFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFI 352 (382)
T ss_pred HHhH----h--------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4311 1 1111121222222223221 12234566777 99999999999764 4568888899999999
Q ss_pred HHhcccchHHHHHHHHHHHH
Q psy13206 398 CDHYGVYLNFYIYSLGCIIC 417 (478)
Q Consensus 398 ~~~~g~~~~~~~~~~~~~l~ 417 (478)
.++.|. ..++..+...++.
T Consensus 353 ~~~~g~-~~~~~~~~~~~~~ 371 (382)
T TIGR00902 353 YPTLGA-GTFVFMAIIAAAA 371 (382)
T ss_pred HHhccH-HHHHHHHHHHHHH
Confidence 999874 4565555555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=206.98 Aligned_cols=329 Identities=10% Similarity=0.004 Sum_probs=196.2
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHh---hhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13206 35 AESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLT---TGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPM 111 (478)
Q Consensus 35 ~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~---~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~ 111 (478)
...++..+++.+++++.+++.|+++||+|||+++.. ..++.....+.+..++|++.++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 346888899999999999999999999999997633 22333333334444589999999999999999999999999
Q ss_pred hhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHHHHH
Q psy13206 112 YIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDAR 187 (478)
Q Consensus 112 ~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~a~ 187 (478)
++.|+.|+++|++++++.+...++|.++++.++.. .+|++.++......++.++...++||++. .+.
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------ 202 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGN---AAP------ 202 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCC---CCC------
Confidence 99999999999999999999999998888877653 46766664333344444444555666541 000
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhc
Q psy13206 188 KSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFART 267 (478)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (478)
..+..... ..+ ....++...+++..+...+...... .....+..+.+.++.+.
T Consensus 203 ---------~~~~~~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~ 255 (1140)
T PRK06814 203 ---------DLKIDRNI---IRS----------TITLLKYAKADKRIWLAILGISWFW-----LVGAVVLSQLPLLAKET 255 (1140)
T ss_pred ---------CCeeccch---HHH----------HHHHHHHHhcCchHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHH
Confidence 00000000 000 0112333333332222211111111 11122333445444432
Q ss_pred -CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccc--------ccccch
Q psy13206 268 -EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVD--------LSKFNW 338 (478)
Q Consensus 268 -~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~ 338 (478)
+.+...........+++.+++.++.+++.|+.++++.+..+.++.+++.+.+............. .....+
T Consensus 256 ~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1140)
T PRK06814 256 LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGW 335 (1140)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccH
Confidence 22212223334445667788999999999888877766555555444433322110000000000 001122
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13206 339 IPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH 400 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~ 400 (478)
...+...+++++.+. ..+...++..+..|++.||++.|+.+....++..+++.+.+.+.+.
T Consensus 336 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 336 RILIDLFGLAAAGGL-YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222222222221 2234567888999999999999999999999999999988887643
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-20 Score=183.31 Aligned_cols=323 Identities=18% Similarity=0.087 Sum_probs=193.8
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcc----cCchh-HHHhhhHHHHHHHHHHHHhhh------HHHHHHHHHH
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY----VGRKP-CLLTTGPLYIISWLLVIFTKH------VYVLYVVRFM 97 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr----~GRr~-~l~~~~~l~~i~~~~~~~a~~------~~~l~~~R~l 97 (478)
.+++++.+.|++.++..+..++.+++.|+++|| +|||| .++.+.+.+.++.+++.+.++ +..+++.+++
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYIL 108 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 468899999999999999999999999999998 78855 566787888888888877664 4677888999
Q ss_pred Hhhhhhhhhhhhhhhhhhcc-ccccchhhhHHHHHHHHHhHHHHhhc--------C---CccchhhHHHHHHHHHHHHH-
Q psy13206 98 QGLAMGIVFTVAPMYIGEIS-GAKCRGALSTFFIGMLNTGILLEYTV--------G---PYVDYDTLAYVSLVIPVVFL- 164 (478)
Q Consensus 98 ~G~~~g~~~~~~~~~~~E~~-p~~~Rg~~~~~~~~~~~~G~~l~~~~--------g---~~~~~~~~~~~~~~~~~~~~- 164 (478)
.|++.+...+...++..|.. ++++|++..++.+....+|.+++..+ + ...+|+..+.+..++..+..
T Consensus 109 ~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~ 188 (437)
T TIGR00792 109 LGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLI 188 (437)
T ss_pred HHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHH
Confidence 99998887777788888987 57899999988887777765543322 1 23467777666555544433
Q ss_pred HhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHH
Q psy13206 165 MTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIV 244 (478)
Q Consensus 165 ~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
+.+..++|.+.. + +.+++ ++.+....++++++++..+.........
T Consensus 189 ~~~~~~~e~~~~-----~--------------~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (437)
T TIGR00792 189 ICFFGTKERYSE-----I--------------PKNIE---------------KKLSLKQIFKALFKNDQLLILCLAYLFY 234 (437)
T ss_pred HHHcCCEecCCC-----C--------------Ccccc---------------cCCCHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334556765410 0 00000 0000011233344433222211111111
Q ss_pred HHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHh
Q psy13206 245 AVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYL 324 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~ 324 (478)
..+......+.+.+.....+..........+..+..+++.++.++++||+|||+.+..+.++.++..+.+..
T Consensus 235 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~--- 306 (437)
T TIGR00792 235 -----NLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF--- 306 (437)
T ss_pred -----HHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH---
Confidence 111111111111111111111111112233345667788888999999999999988877666655443221
Q ss_pred hcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCC-------ccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13206 325 LSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFP-------SNTRGLAGGVTTITLTVISFLVMKMYQVI 397 (478)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p-------~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l 397 (478)
..+ ..+...+......+..+. ..+..+++.+|..| ++.+|+..|+.+....++..+++.+.+.+
T Consensus 307 ~~~--------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 307 AGS--------NLPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred cch--------hHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 011111111122222221 12445667777754 56679999999999999999999999998
Q ss_pred HHhcc
Q psy13206 398 CDHYG 402 (478)
Q Consensus 398 ~~~~g 402 (478)
.+..|
T Consensus 378 l~~~G 382 (437)
T TIGR00792 378 LGIIG 382 (437)
T ss_pred HHHcC
Confidence 87655
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-20 Score=176.28 Aligned_cols=343 Identities=14% Similarity=0.202 Sum_probs=201.2
Q ss_pred ccccCcch-hhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q psy13206 29 YIEMTSAE-SSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFT 107 (478)
Q Consensus 29 ~~~~~~~~-~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~ 107 (478)
++++|+.| .|.+.++|+.++++.+++.|+++||+|-|+++.++++.+++.+++.++++++..+.+.|++.|++.|+.+
T Consensus 55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~- 133 (511)
T TIGR00806 55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI- 133 (511)
T ss_pred HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 68899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc---cchhh---HHHHHHHHHHHHHHhhccccCChHHHHHcC
Q psy13206 108 VAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY---VDYDT---LAYVSLVIPVVFLMTFIWMPESPYFLIMKG 181 (478)
Q Consensus 108 ~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~---~~~~~---~~~~~~~~~~~~~~~~~~~pESp~~l~~~~ 181 (478)
+...++..|+|+++|+++.++...+..+|.+++++++.. .+|++ +.++.+....+.++.-+++|-.++-+.-+.
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~ 213 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNR 213 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhcc
Confidence 999999999999999999999999999998887776543 46665 344555445555555566775444443322
Q ss_pred CHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHH-HHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhH
Q psy13206 182 RDVDARKSLFWLRGGRESSKDKINLELSNIKQDV-EREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYA 260 (478)
Q Consensus 182 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (478)
+.+.-...-.......++ +. ..+.+..+... ..-+..-.++.+..+++...+. .++.....+|+.-+..|.
T Consensus 214 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~W-----SlWwa~a~~g~~qv~~Y~ 285 (511)
T TIGR00806 214 LEDVRGALPCELDQMVPG-PG--GKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLW-----SLWWVFNSAGYYLITYYV 285 (511)
T ss_pred ccccccccccccccCCCC-Cc--cccchhhhhhhhHHHHHHHHHHHHHhcCcchhhh-----hHHHHHHhhHHHHHHHHH
Confidence 110000000000000000 00 00000000000 0000112233444444333221 122222345666666676
Q ss_pred HHHHHhcCCCCCC-chhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchH
Q psy13206 261 SSTFARTEGSLIT-PDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWI 339 (478)
Q Consensus 261 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (478)
-..+.....+..+ -+..-.+..+...+.++..|++-.++.|--.+.++ ++.++.+...+... ....-|.
T Consensus 286 Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~-----v~s~~~~gll~~m~-----~t~~Iw~ 355 (511)
T TIGR00806 286 HTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIA-----VVSAIQAGLVFWMS-----QSHDIWV 355 (511)
T ss_pred HHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH-----HHHHHHHHHhhhhh-----cccchHH
Confidence 6666544332111 01122334444555667778775544332222222 22222222221111 1223466
Q ss_pred HHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHH
Q psy13206 340 PLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVM 391 (478)
Q Consensus 340 ~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~ 391 (478)
..+.-..|...|.+-. ++...-++.....+.-|..+|+++...-+...+..
T Consensus 356 ~Y~~yvlf~~~y~fli-tia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT 406 (511)
T TIGR00806 356 LYVTYVLFRGIYQFLV-PIATFQIASSLSKELCALVFGINTFVATALKTIIT 406 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhcccceEEEEecHHHHHHHHHHheE
Confidence 6666566665555422 22222333444556568888988877665554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-19 Score=174.00 Aligned_cols=337 Identities=12% Similarity=0.036 Sum_probs=191.5
Q ss_pred eecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCch----hHHHhhhHHHHHHHHHH
Q psy13206 7 GWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRK----PCLLTTGPLYIISWLLV 82 (478)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr----~~l~~~~~l~~i~~~~~ 82 (478)
|...|.+|.+.+ +++.|..+.|++.+.+.++..+++++.|++.||+||| +.+.+...+ ......
T Consensus 21 g~~~p~l~~~l~----------~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~ 88 (382)
T PRK11128 21 GVFLPFWSVWLK----------GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFW 88 (382)
T ss_pred HHHhhhHHHHHH----------hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHH
Confidence 455566676665 3678999999999999999999999999999999994 333322222 122334
Q ss_pred HHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHH
Q psy13206 83 IFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLV 158 (478)
Q Consensus 83 ~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~ 158 (478)
..++|++.+++.|++.|++.+...+...+++.++. ++|++..+......++|..+++.++. ..+||..++....
T Consensus 89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~ 166 (382)
T PRK11128 89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA 166 (382)
T ss_pred HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 45688999999999999999999998888888774 44666555566656666666666553 4588887765443
Q ss_pred HHHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHH
Q psy13206 159 IPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSL 238 (478)
Q Consensus 159 ~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (478)
..++..+...+.||.++ +++.+ + ++++...++++.++++..+.-.
T Consensus 167 ~~~~~~~~~~~~~~~~~----~~~~~--------------~-----------------~~~~~~~~~~~i~~~~~~~~~~ 211 (382)
T PRK11128 167 GVASMLLGQLLRPTIMP----QGESR--------------Q-----------------QESAGWPAWKALLKEPTVWRFL 211 (382)
T ss_pred HHHHHHHHHHccCCCCC----ccccc--------------c-----------------ccccccchHHHHHcChhHHHHH
Confidence 32222222233444311 00000 0 0000112344555544333222
Q ss_pred HHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHH
Q psy13206 239 LIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLI 318 (478)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~ 318 (478)
....+... .......+.+.+..+.+.+.........+..+..++..++.+++.||+|+|+.+..+.+..++..+.
T Consensus 212 ~~~~l~~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~ 286 (382)
T PRK11128 212 LCVSLLQG-----SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGL 286 (382)
T ss_pred HHHHHHHH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 21111111 1112222333333332222111122222334455666778899999999999988777766665433
Q ss_pred HHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHH-HHHHHHHHHHHHHHH
Q psy13206 319 AGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTIT-LTVISFLVMKMYQVI 397 (478)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~-~~lg~~i~~~~~~~l 397 (478)
+.. .+ ..+...+.....++.++.. .+....+..+. +++.+++..++.+.. ..+|..+++.+.+.+
T Consensus 287 ~~~----~~--------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l 352 (382)
T PRK11128 287 MGS----TT--------ALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFL 352 (382)
T ss_pred HHh----hh--------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 11 1122222222223333321 22233455565 556678888877644 455668899999999
Q ss_pred HHhcccchHHHHHHH
Q psy13206 398 CDHYGVYLNFYIYSL 412 (478)
Q Consensus 398 ~~~~g~~~~~~~~~~ 412 (478)
.+.+|. ..++..++
T Consensus 353 ~~~~g~-~~~~~~~~ 366 (382)
T PRK11128 353 YQHLGA-GVFWVMAL 366 (382)
T ss_pred HHhccH-HHHHHHHH
Confidence 998875 34444443
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=165.18 Aligned_cols=335 Identities=15% Similarity=0.127 Sum_probs=191.8
Q ss_pred cCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13206 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPM 111 (478)
Q Consensus 32 ~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~ 111 (478)
.+..-.|.+.|.|.+++.+.++.+|.++||+|||+++.++.+..+++-.+.+++.||..+++.|++.|+..|- ..+..+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rA 143 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRA 143 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHH
Confidence 3556679999999999999999999999999999999999999999999999999997777779999999665 477799
Q ss_pred hhhhccccccchhhhHHHHHHHHHhHHHHhhcCCccch------hhHHHH-HH---HHHHH-HHHhhccccCChHHHHHc
Q psy13206 112 YIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVDY------DTLAYV-SL---VIPVV-FLMTFIWMPESPYFLIMK 180 (478)
Q Consensus 112 ~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~~~------~~~~~~-~~---~~~~~-~~~~~~~~pESp~~l~~~ 180 (478)
+++|+.++++|+..++.......+|.++++.+|.++.- +.++.+ ++ ++... .....+++||+-+ .+
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~r 220 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LR 220 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---ch
Confidence 99999999999999999999999999999988865422 112222 11 11111 2345567999932 22
Q ss_pred CCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccch-hHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHH-
Q psy13206 181 GRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSD-DFMDIISTPANRRSLLIVQIVAVADVISGMSAVLP- 258 (478)
Q Consensus 181 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 258 (478)
+|.+|. . +..+..++.++-++.+. .-....++++.+..+... ..+..+...+..+.+
T Consensus 221 k~~~~~-----------~--------~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~--~i~~l~~~ly~~l~s~ 279 (451)
T KOG2615|consen 221 KRNDEH-----------S--------TLQEAADDRLALLKFARIFKVAALRNPPLLDFISVL--RIFGLHYFLYLELFSG 279 (451)
T ss_pred hhcccc-----------c--------chhhhhhhhhhhcchhhhhhhhhhcCccccchHHHH--HHHHHHHHHHHHHHHH
Confidence 111100 0 00000000000000000 001122223222211111 111111111222222
Q ss_pred hHHHHHHh-cCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccc
Q psy13206 259 YASSTFAR-TEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFN 337 (478)
Q Consensus 259 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 337 (478)
|....... .+....++.+.+-+.....+.++++.+.+..+..|-+=.....+...+.+ +...+...+... ..
T Consensus 280 ~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~-~vP~~llls~~~------~~ 352 (451)
T KOG2615|consen 280 LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLL-IVPAFLLLSLAR------TP 352 (451)
T ss_pred HHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHH-HHHHHHHHhccc------cc
Confidence 21111111 12223455555555556666666666666666555441111111111111 111111111100 01
Q ss_pred hHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13206 338 WIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD 399 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~ 399 (478)
.........+.+..+ ..-++...++....|++.||+..|+....+.++-+++|.+.+.++.
T Consensus 353 ~~l~~~s~l~sf~~A-~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 353 VVLYLGSTLKSFSTA-SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hhhhHHHHHHHHHHH-HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 111222223332222 2234556677888999999999999999999999999998876544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-18 Score=172.57 Aligned_cols=129 Identities=11% Similarity=0.100 Sum_probs=111.0
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcc-cCchhHHHhhhHHHHHHHHHHHHhhhHHH-HHHHHHHHhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY-VGRKPCLLTTGPLYIISWLLVIFTKHVYV-LYVVRFMQGLAMGIVF 106 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr-~GRr~~l~~~~~l~~i~~~~~~~a~~~~~-l~~~R~l~G~~~g~~~ 106 (478)
+++.+..+.+|+.+.+.....+..+++|+++|| +|||+++.++.+++.++++.++++++... ++++|+++|+|.|...
T Consensus 44 ~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~ 123 (489)
T PRK10207 44 QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFK 123 (489)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccccc
Confidence 477888899999999998888888999999999 99999999999999999999999887554 5589999999999999
Q ss_pred hhhhhhhhhccccc--cchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHH
Q psy13206 107 TVAPMYIGEISGAK--CRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSL 157 (478)
Q Consensus 107 ~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~ 157 (478)
+....++.|.+|++ +|++..+......++|..+++.+++ ..+||+.|++..
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~ 180 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCG 180 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 99999999999887 4577777888888888877766654 458888877643
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-18 Score=171.81 Aligned_cols=130 Identities=10% Similarity=0.085 Sum_probs=115.9
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcc-cCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY-VGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFT 107 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr-~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~ 107 (478)
+++++..+.+++.+.+.++..+++++.|+++|| +|||+++.++.++++++.++.+++++++.++++|++.|+|.|...+
T Consensus 42 ~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~ 121 (475)
T TIGR00924 42 GLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKA 121 (475)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccC
Confidence 478899999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccccc---chhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHHH
Q psy13206 108 VAPMYIGEISGAKC---RGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSLV 158 (478)
Q Consensus 108 ~~~~~~~E~~p~~~---Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~ 158 (478)
....+++|++|+++ |+...++.....++|..+++.++.. .+|+..+.....
T Consensus 122 ~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~ 179 (475)
T TIGR00924 122 NPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAV 179 (475)
T ss_pred CHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999998764 8888888888888888887776543 478887766543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-20 Score=190.37 Aligned_cols=116 Identities=15% Similarity=0.256 Sum_probs=108.0
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh----------------------
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK---------------------- 86 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~---------------------- 86 (478)
++++++.+.|++.|.+.+|+++++++.|+++||+|||+.+.++.++++++++++++.+
T Consensus 62 ~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~ 141 (633)
T TIGR00805 62 RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSAN 141 (633)
T ss_pred hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccc
Confidence 5788999999999999999999999999999999999999999999999999998863
Q ss_pred -----------------------------hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhH
Q psy13206 87 -----------------------------HVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGI 137 (478)
Q Consensus 87 -----------------------------~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~ 137 (478)
.+..++++|+++|+|.+..++.+.+|+.|+.|+++|+++.++......+|.
T Consensus 142 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~ 221 (633)
T TIGR00805 142 SFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGP 221 (633)
T ss_pred cccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhh
Confidence 256788999999999999999999999999999999999999999999998
Q ss_pred HHHhhcC
Q psy13206 138 LLEYTVG 144 (478)
Q Consensus 138 ~l~~~~g 144 (478)
.++++++
T Consensus 222 ~lG~llg 228 (633)
T TIGR00805 222 AFGYLLG 228 (633)
T ss_pred HHHHHHH
Confidence 8887765
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-18 Score=169.66 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=125.9
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT------KHVYVLYVVRFMQGLAM 102 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a------~~~~~l~~~R~l~G~~~ 102 (478)
++++|..|.+++.++.. ...+++++.|+++||+|||+++.++.+++.+++++++++ ++++.++++|+++|+|.
T Consensus 56 ~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~ 134 (591)
T PTZ00207 56 RYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGC 134 (591)
T ss_pred HhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence 57888899999887743 345678889999999999999999999999999999998 68999999999999999
Q ss_pred hhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHH-HhhcCCc--cchhhHHHHHHHHHHHHH---HhhccccCChHH
Q psy13206 103 GIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILL-EYTVGPY--VDYDTLAYVSLVIPVVFL---MTFIWMPESPYF 176 (478)
Q Consensus 103 g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l-~~~~g~~--~~~~~~~~~~~~~~~~~~---~~~~~~pESp~~ 176 (478)
+...+.+...+.+|+| ++||++.++...+..+|..+ +++...+ .+|+..+++...++++.. ..+...|++|+|
T Consensus 135 ~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~ 213 (591)
T PTZ00207 135 MLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLT 213 (591)
T ss_pred HHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhh
Confidence 9999999999999997 78999999999999988864 3322222 256666665555554432 233446888898
Q ss_pred HHHcCCHHHHHHHHHH
Q psy13206 177 LIMKGRDVDARKSLFW 192 (478)
Q Consensus 177 l~~~~~~~~a~~~l~~ 192 (478)
...++|.+++++..++
T Consensus 214 ~~~~~~~~~~~~~~~~ 229 (591)
T PTZ00207 214 GYQEKHLDEEEKAQRL 229 (591)
T ss_pred cccccCCCHHHHHHHh
Confidence 7666655555555333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-17 Score=163.28 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=106.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy13206 34 SAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYI 113 (478)
Q Consensus 34 ~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 113 (478)
+....|+.+...++.+++.++.|+++|.||||+.++.+.++..+|++.++.++|...++++-.+.|+|.|.... ....+
T Consensus 77 ~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~i 155 (599)
T PF06609_consen 77 SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAI 155 (599)
T ss_pred CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999888775 45568
Q ss_pred hhccccccchhhhHHHHHHHH----HhHHHHhhcCCccchhhHHHHHHHHHHHH
Q psy13206 114 GEISGAKCRGALSTFFIGMLN----TGILLEYTVGPYVDYDTLAYVSLVIPVVF 163 (478)
Q Consensus 114 ~E~~p~~~Rg~~~~~~~~~~~----~G~~l~~~~g~~~~~~~~~~~~~~~~~~~ 163 (478)
+|..|.|+|+....+...... .|..++..+....+|||.+++..+...+.
T Consensus 156 sEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~ 209 (599)
T PF06609_consen 156 SELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIA 209 (599)
T ss_pred HHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHH
Confidence 999999999876655543332 23444444455568999988777665443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-17 Score=162.59 Aligned_cols=374 Identities=15% Similarity=0.203 Sum_probs=214.4
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhc----ccCchhHHHhh-hHHHHHHHHHHHHhhhHHHHH-----------
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVD----YVGRKPCLLTT-GPLYIISWLLVIFTKHVYVLY----------- 92 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~D----r~GRr~~l~~~-~~l~~i~~~~~~~a~~~~~l~----------- 92 (478)
+++.++.+.+++..+..+..++.+++.|+++| |+|||+.++.. .+...++.++.++++++..++
T Consensus 33 ~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~ 112 (477)
T TIGR01301 33 ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPR 112 (477)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhH
Confidence 36678899999999999999999999999999 59999999876 555556667777776653221
Q ss_pred -HHHHHHh-----hhhhhhhhhhhhhhhhccccccc--hhhhHHHHHHHHHhHHHHhhcCCcc-----------------
Q psy13206 93 -VVRFMQG-----LAMGIVFTVAPMYIGEISGAKCR--GALSTFFIGMLNTGILLEYTVGPYV----------------- 147 (478)
Q Consensus 93 -~~R~l~G-----~~~g~~~~~~~~~~~E~~p~~~R--g~~~~~~~~~~~~G~~l~~~~g~~~----------------- 147 (478)
+.+++.| ++.....+...+++.|.+|+++| +.+.++.+.+..+|.++++.+|...
T Consensus 113 ~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~ 192 (477)
T TIGR01301 113 AIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVS 192 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccc
Confidence 1344444 47777888889999999998865 5788888888899988888876432
Q ss_pred --chhhHHHHHHHHHHH-HHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchh
Q psy13206 148 --DYDTLAYVSLVIPVV-FLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDD 224 (478)
Q Consensus 148 --~~~~~~~~~~~~~~~-~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (478)
+.+..|++..+..++ .++..+..+|.|... .++.++. ..++.++. +.+...+.-
T Consensus 193 ~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~~-----~~~~~~~~----------------~~~~~~~~i 249 (477)
T TIGR01301 193 CANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFINS-----EAAPPSKH----------------GEEAFFGEL 249 (477)
T ss_pred cchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchhh-----hccccccc----------------chhhhHHHH
Confidence 234455554443333 344556678876311 0000000 00000000 000000011
Q ss_pred HHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcC--CCCCCc----------hhhHHHHHHHHHHHhhhh
Q psy13206 225 FMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTE--GSLITP----------DECTLLLGILVFLSTFPT 292 (478)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~ 292 (478)
++...+.|+..+++.+...+. +.+++.+..|.+....+.. +.+..+ .....+.++...+.++..
T Consensus 250 ~~~~~~mP~~m~~l~~vqffs----W~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l 325 (477)
T TIGR01301 250 FGAFKYLPRPVWILLLVTCLN----WIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGM 325 (477)
T ss_pred HHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222233333333332222 3344455555555444321 111111 112233444555666677
Q ss_pred hHhhhhcCC-chhHHHhhHHHHHHHHHHHHHHhhcccc-c----ccc-ccc---chHHHHHHHHHHHHHHhcccccchhh
Q psy13206 293 AFLVDRTGR-RPLLLVSCFGSGISQLIAGTYYLLSENY-T----VDL-SKF---NWIPLISITCFAVIYSIGLGPLVPTL 362 (478)
Q Consensus 293 g~l~Dr~GR-r~~l~~~~~~~~i~~~~~~~~~~~~~~~-~----~~~-~~~---~~~~~~~~~~~~~~~~~g~g~~~~~~ 362 (478)
-++.+|+|+ |.....+.++.++++..........++. . ... ... .+..++.....++.++. ...+++++
T Consensus 326 ~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-~~siPfal 404 (477)
T TIGR01301 326 EKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI-TYSIPFAL 404 (477)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH-HHHHhHHH
Confidence 788999996 5565777666666655543222111100 0 000 000 12222222223333322 22457788
Q ss_pred hcccCCcccc--chhhHHHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHhheeecCCCC
Q psy13206 363 QGEFFPSNTR--GLAGGVTTITLTVISFLVMKMYQVICDHYGV--YLNFYIYSLGCIICGVLVYFIIPESKG 430 (478)
Q Consensus 363 ~~El~p~~~R--g~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~--~~~~~~~~~~~~l~~~~~~~~~pEt~~ 430 (478)
.++..|++.| |.-+|+.|.+.-+...+.....+.+.+..|. ...+.+-++..++.++.+++.+|.++.
T Consensus 405 ~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 405 ASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8888885444 8889999999888888888777776666662 344555667777888888888998753
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-17 Score=158.67 Aligned_cols=348 Identities=10% Similarity=0.006 Sum_probs=196.9
Q ss_pred ccceeecchhhhhhhcccccccCCCcccccCcchhhHHH--HHHHHHHHhhhhhh-hhhhcccCchhHHHhhhHHHHH-H
Q psy13206 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVV--SIIELGNLVTPIPI-GFLVDYVGRKPCLLTTGPLYII-S 78 (478)
Q Consensus 3 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~ig~~~~-G~l~Dr~GRr~~l~~~~~l~~i-~ 78 (478)
|+.+|...|.+|.+.+ +.+.++++.|++. +...+...+.+++. ++..||+||||..++...+... .
T Consensus 14 g~~~~~~~p~lp~~l~----------~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 14 GIPIGLAMDALPTLLR----------EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HhHHHHHHHHHHHHHH----------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence 5566777788888876 3578999999973 66677777788777 5579999999997666533222 1
Q ss_pred HHHHH---Hhhh-HHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhc----CCccchh
Q psy13206 79 WLLVI---FTKH-VYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTV----GPYVDYD 150 (478)
Q Consensus 79 ~~~~~---~a~~-~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~----g~~~~~~ 150 (478)
....+ ...+ ...+...-++.++......+..-.+..|..++++++...+....+..+|.+++... ....+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~ 163 (390)
T TIGR02718 84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR 163 (390)
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 22222 1222 33444555666667777777788888899999999988887777777887777643 3356899
Q ss_pred hHHHHHHHHHHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhc
Q psy13206 151 TLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIIS 230 (478)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (478)
..+++......+..+...+++|.+. .+ +++ + + +...++++.++
T Consensus 164 ~~f~~~a~l~~~~~~~~~~~~~~~~-----~~--------------~~~-~---~--------------~~~~~~~~~l~ 206 (390)
T TIGR02718 164 PAFLLVACVPLASLVCVLWLKDRAV-----AS--------------PEA-P---L--------------ARRASLFRFFR 206 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCc-----Cc--------------ccc-c---h--------------hhHHHHHHHHc
Confidence 8888776666554444444433221 00 000 0 0 00112344454
Q ss_pred CcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHH----HHHHHHhhhhhHhhhhcCCchhHH
Q psy13206 231 TPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLG----ILVFLSTFPTAFLVDRTGRRPLLL 306 (478)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~l~Dr~GRr~~l~ 306 (478)
+|..+..+....... .+......+.+..+.+.+ .++...+.+.. ...+++.++.+++.||+|+|+.+.
T Consensus 207 ~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~l~~~G---~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~ 278 (390)
T TIGR02718 207 RPLAWSLLALALLSA-----MTAVSGFGLSKLYLVDAG---WPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFI 278 (390)
T ss_pred CcCHHHHHHHHHHHH-----HHHHHHHHHhhHHHHhcC---CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 443222222111111 111222233333344332 23344444432 234566788999999999999887
Q ss_pred HhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCc-cccchhhHHHHHHHHH
Q psy13206 307 VSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPS-NTRGLAGGVTTITLTV 385 (478)
Q Consensus 307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~-~~Rg~~~g~~~~~~~l 385 (478)
.+.+..++..+...... .. .. ....+.......+..+..+... +....+..+..++ +.+|+..++.+....+
T Consensus 279 ~~~~~~~~~~~~~~~~~--~~-~~---~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l 351 (390)
T TIGR02718 279 LGVGLAGSLALLWFAQA--AF-WL---APGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDL 351 (390)
T ss_pred HHHHHHHHHHHHHHHHH--Hc-cc---CCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 76655433222211111 00 00 0001111111111112222222 2233344444554 8899999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHH
Q psy13206 386 ISFLVMKMYQVICDHYGVYLNFYIYSL 412 (478)
Q Consensus 386 g~~i~~~~~~~l~~~~g~~~~~~~~~~ 412 (478)
+..++|.+.+.+.+..|....|...+.
T Consensus 352 g~~~g~~~~G~l~~~~G~~~~f~~~~~ 378 (390)
T TIGR02718 352 GELIASSIAGYLTDRFGYAGGFLSGTV 378 (390)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 999999999999998886555554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=160.52 Aligned_cols=345 Identities=17% Similarity=0.181 Sum_probs=209.7
Q ss_pred ccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhhhhh
Q psy13206 31 EMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT-----KHVYVLYVVRFMQGLAMGIV 105 (478)
Q Consensus 31 ~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a-----~~~~~l~~~R~l~G~~~g~~ 105 (478)
.-|+...+++.+...+..++.++++|.++||+.||++++.+.++..+.++..++. .+++.+++.-++.|++.+..
T Consensus 41 t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~ 120 (524)
T PF05977_consen 41 TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFF 120 (524)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 4477788999999999999999999999999999999999998887665544432 36899999999999999999
Q ss_pred hhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHHHHHhhccccCChHHHHHcC
Q psy13206 106 FTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKG 181 (478)
Q Consensus 106 ~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~ 181 (478)
.|+-.+++.|..|+++...+.++.+...++..++++.+|.. .+-...+.+..+--++..+.....+..+
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~------- 193 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP------- 193 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-------
Confidence 99999999999999999999999888888887777766543 2222233322211111111111111000
Q ss_pred CHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHH
Q psy13206 182 RDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYAS 261 (478)
Q Consensus 182 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (478)
.+++ .+.| ... +..+..++-..+++..+..+.....+ ..........+|+
T Consensus 194 --------------~~~~----~~~e--~~~------~~l~~G~ryv~~~~~l~~~l~~~~~~--~l~~~a~~aLlPl-- 243 (524)
T PF05977_consen 194 --------------PPSS----LPRE--RFF------SALREGLRYVRSSPPLRSVLLRSFLF--NLFASAVWALLPL-- 243 (524)
T ss_pred --------------cccc----cchh--hhh------hhHHHHHHHHhcchHHHHHHHHHHHH--HHhhhHHHHhhhH--
Confidence 0000 0000 000 00111222222233222222222221 1111222233332
Q ss_pred HHHHhcCCCCCCchhhH---HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccch
Q psy13206 262 STFARTEGSLITPDECT---LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNW 338 (478)
Q Consensus 262 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 338 (478)
+..+.-+ .++..++ ...+++.++|++..+++.+|+++++++..+.++.+++++.++.. ...+
T Consensus 244 -~a~~~l~--~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~------------~~~~ 308 (524)
T PF05977_consen 244 -FARDVLG--GGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS------------PSFW 308 (524)
T ss_pred -HHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc------------hHHH
Confidence 2222211 2333333 34567777888888888899999888887777777665554321 1112
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q psy13206 339 IPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICG 418 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~ 418 (478)
.....+...+++... ......+...+..|.++||+..++.......+..++..+.|.+.+.+|....+.+.++..++..
T Consensus 309 ~~~~~l~l~G~~~~~-~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 309 LALIALFLAGAAWII-ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 222222222222221 1223445667889999999999999999999999999999999999998766665555444444
Q ss_pred HHhh-eeecCC
Q psy13206 419 VLVY-FIIPES 428 (478)
Q Consensus 419 ~~~~-~~~pEt 428 (478)
++.+ .-+|+.
T Consensus 388 ~~~~~~~l~~~ 398 (524)
T PF05977_consen 388 LIALRFPLRQG 398 (524)
T ss_pred HHHHHhcCccc
Confidence 4433 234444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=153.42 Aligned_cols=335 Identities=15% Similarity=0.135 Sum_probs=205.1
Q ss_pred cccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q psy13206 28 TYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFT 107 (478)
Q Consensus 28 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~ 107 (478)
.+.+-.+.+.|++.+++.+-+++-+++.|.+.||+|+|-.++++..++..++++.+|..+|+.+++.|.+||+|.+...+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 45566677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccccc-cchhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCC
Q psy13206 108 VAPMYIGEISGAK-CRGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGR 182 (478)
Q Consensus 108 ~~~~~~~E~~p~~-~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~ 182 (478)
+..+++++.+|.+ +||++++....+.++|.++++.+|.. .+....|.+...+.++-..+.+++-|.-
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~-------- 250 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPT-------- 250 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcc--------
Confidence 9999999999875 47999999999999999999998864 4566666665555544433333321110
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHH
Q psy13206 183 DVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASS 262 (478)
Q Consensus 183 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (478)
+.. + ++.....+++++++.|... ....-+..+ ..+....-|..+.
T Consensus 251 --------------~~~--~--------------~~~~~~~~~~~Ll~dP~I~---~~agai~~~--n~~lafLePtlsl 295 (464)
T KOG3764|consen 251 --------------EMD--P--------------DSTEQGTPMWSLLMDPYIL---LIAGAITFS--NSSLAFLEPTLSL 295 (464)
T ss_pred --------------ccC--c--------------cccccCccHHHHHhCchHh---hhhcchhhc--cchHHHhCcccHH
Confidence 000 0 0011122344555444221 111111111 1112222233332
Q ss_pred HHHhcCCCCC-CchhhHHHHHHHHHHHhhhhhHhhhhcCCch-h-HHHhhHHHHHHHHHHHHHHhhcccccccccccchH
Q psy13206 263 TFARTEGSLI-TPDECTLLLGILVFLSTFPTAFLVDRTGRRP-L-LLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWI 339 (478)
Q Consensus 263 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~-~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (478)
...++..... .-+...+-.++..++++.+.|.++||+++.+ . .+.+.+..+.++....... .+.
T Consensus 296 wm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~-------------~~~ 362 (464)
T KOG3764|consen 296 WMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT-------------SIA 362 (464)
T ss_pred HHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh-------------hHH
Confidence 2222211111 1112223345667789999999999999433 2 2233333332222211110 111
Q ss_pred HHHHHHHHHHHHHhccc--ccchhhhcccCCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy13206 340 PLISITCFAVIYSIGLG--PLVPTLQGEFFPSN------TRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYS 411 (478)
Q Consensus 340 ~~~~~~~~~~~~~~g~g--~~~~~~~~El~p~~------~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~ 411 (478)
.+ .+-.++..++.+.. .+.+ ...++.+.+ .-|...++....-.++.+++|.+.+.+.+..|..+...+.+
T Consensus 363 ~L-~vp~~~l~~~i~~~dasl~P-~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig 440 (464)
T KOG3764|consen 363 QL-WVPNFGLGFGIGLADASLIP-TLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIG 440 (464)
T ss_pred HH-hhhhHHHHHHHHHHHHHHhh-hhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHH
Confidence 11 11112222222211 1111 112222222 44678888888888999999999999988888655555555
Q ss_pred HHHHHHHHH
Q psy13206 412 LGCIICGVL 420 (478)
Q Consensus 412 ~~~~l~~~~ 420 (478)
+..++.+-+
T Consensus 441 ~~n~iyapv 449 (464)
T KOG3764|consen 441 ILNLIYAPV 449 (464)
T ss_pred HHHHHHHHH
Confidence 555544443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=146.50 Aligned_cols=348 Identities=15% Similarity=0.140 Sum_probs=213.8
Q ss_pred ccceeecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHH
Q psy13206 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLV 82 (478)
Q Consensus 3 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~ 82 (478)
|+.-....+.+|.+.+ .++++..|.+++...++.|+.+++++.|++.+|+|+|+.++.+..++++++.+.
T Consensus 26 G~~~~l~diLip~l~~----------~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 26 GFITCLNDILIPHLKE----------VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHhhcchhhHHHHHH----------HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4444445566676664 578999999999999999999999999999999999999999999999999888
Q ss_pred H---HhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCcc-c----------
Q psy13206 83 I---FTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV-D---------- 148 (478)
Q Consensus 83 ~---~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~-~---------- 148 (478)
. -..+|..++.+-|+.|.|.|.--+.+..|++...|++.-.+.....|.+..+|.++++.++..+ .
T Consensus 96 ~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~ 175 (422)
T COG0738 96 WPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA 175 (422)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH
Confidence 4 5578999999999999999999999999999999998888889999999999999888876431 1
Q ss_pred ----hhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchh
Q psy13206 149 ----YDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDD 224 (478)
Q Consensus 149 ----~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (478)
|+.......-.|.+.+.....+ ..+...+.+-++.++ .+ .++.++.+..
T Consensus 176 ~~~~~~~~~~~~v~~pYl~~~~~lvl----------------l~v~~~~~k~p~~~~--~~---------~~~~~~~~~~ 228 (422)
T COG0738 176 QILAIKGADASSVQFPYLILAGLLVL----------------LAVLILLSKLPDLQV--AA---------PSLGASGSAG 228 (422)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH----------------HHHHHHhccCCcCCc--cc---------ccccccccch
Confidence 1111111111111110000000 000000000000000 00 0000011113
Q ss_pred HHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCch
Q psy13206 225 FMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRP 303 (478)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~ 303 (478)
..+.+++|+.+...+...+ ....+ .+.-.|.+.+..+..+ +..++.......-.+.++|.+++.++..|+...|
T Consensus 229 ~~~l~~~~~~~~gvl~~Fl-YVG~E----va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k 303 (422)
T COG0738 229 LSSLFQNKHLRLGVLAIFL-YVGAE----VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK 303 (422)
T ss_pred HHHHHhChHHHHHHHHHHH-HHhHH----HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 4556665544433332222 22222 2333455555555322 2223344445556667788888888888999888
Q ss_pred hHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHH
Q psy13206 304 LLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITL 383 (478)
Q Consensus 304 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~ 383 (478)
.+....++..+.++.... .. +...+..+.+.+++. ....|.+.+...+..| + .....|..-...
T Consensus 304 ~Laf~a~~~ill~~~~~l----~~---------g~v~~~~l~~ig~F~-simfPTIfslal~~l~-~-~ts~~s~~l~ma 367 (422)
T COG0738 304 YLAFYALIAILLLLAVAL----IG---------GVVALYALFLIGLFN-SIMFPTIFSLALKNLG-E-HTSVGSGLLVMA 367 (422)
T ss_pred HHHHHHHHHHHHHHHHHH----hc---------ChHHHHHHHHHHHHh-HHHHHHHHHHHHhccC-c-cccccceeeeeh
Confidence 887766554443333221 10 122233333333322 2345666677778787 3 233334444455
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHH
Q psy13206 384 TVISFLVMKMYQVICDHYGVYLNFY 408 (478)
Q Consensus 384 ~lg~~i~~~~~~~l~~~~g~~~~~~ 408 (478)
.+|+.+.|.+.+++.+..+....+.
T Consensus 368 ivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 368 IVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred eecchHHHHHHHHHHHhhhhHHHHH
Confidence 6789999999999999988765554
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-18 Score=168.74 Aligned_cols=373 Identities=14% Similarity=0.210 Sum_probs=225.6
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHH-HHHhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVR-FMQGLAMGIVFT 107 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R-~l~G~~~g~~~~ 107 (478)
+++-+.++.+|+.|+..-...+..++.+.+.||||.|.+.+.+.++..++.++++|++++|++++.= ++.|+|.|..+.
T Consensus 75 ~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~ 154 (509)
T KOG2504|consen 75 YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYL 154 (509)
T ss_pred HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhc
Confidence 4566788899999999999999999999999999999999999999999999999999998777665 888999999999
Q ss_pred hhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHH-HHHhhccccCChHHHHHcCC
Q psy13206 108 VAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVV-FLMTFIWMPESPYFLIMKGR 182 (478)
Q Consensus 108 ~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~-~~~~~~~~pESp~~l~~~~~ 182 (478)
.+.+.+..+++ ++|+.+.++...+..+|.++-+.+. ...+||...++...+.+- +......-|.+|+-...
T Consensus 155 paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--- 230 (509)
T KOG2504|consen 155 PAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--- 230 (509)
T ss_pred chhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---
Confidence 99999997665 5688888888888888766544443 345888766544433322 22223333433321100
Q ss_pred HHHHHHHHHHH--------hCC----CCCchhhHHHHHHHHHHHHHHhh--ccchhH----HHhhcCcchhHHHHHHHHH
Q psy13206 183 DVDARKSLFWL--------RGG----RESSKDKINLELSNIKQDVEREM--KLSDDF----MDIISTPANRRSLLIVQIV 244 (478)
Q Consensus 183 ~~~a~~~l~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~ 244 (478)
.++..+..... +.. .....+....+.++.++..++.. ...... .++++++ ..+...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~-----~fl~~~~ 305 (509)
T KOG2504|consen 231 EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDP-----KFLLLAL 305 (509)
T ss_pred hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCc-----hHHHHHH
Confidence 01100000000 000 00000000000001100000000 001111 2444432 2222222
Q ss_pred HHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCc--hhHHHhhHHHHHHHHHHHHH
Q psy13206 245 AVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRR--PLLLVSCFGSGISQLIAGTY 322 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr--~~l~~~~~~~~i~~~~~~~~ 322 (478)
.......++.....+++....+.+.+.........++++...++.+..|+++|+...+ .+..++.++.+++.+.+...
T Consensus 306 ~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~ 385 (509)
T KOG2504|consen 306 SNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA 385 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 2222333444444555555554444444555666677888889999999999998843 34455555555554332211
Q ss_pred HhhcccccccccccchHHHHHHHHHHHHHHhcc---cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13206 323 YLLSENYTVDLSKFNWIPLISITCFAVIYSIGL---GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD 399 (478)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~ 399 (478)
. .+. .+..+..+++... ..+.+.+..|+.+.+.-..+.|+...+..++..++|.+.+.+.+
T Consensus 386 ----~---------~~~---~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d 449 (509)
T KOG2504|consen 386 ----T---------TYV---GLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYD 449 (509)
T ss_pred ----c---------cHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeee
Confidence 1 111 1222222222222 23444678899999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHHHhheeec
Q psy13206 400 HYGVYLNFYIYSLGCIICGVLVYFIIP 426 (478)
Q Consensus 400 ~~g~~~~~~~~~~~~~l~~~~~~~~~p 426 (478)
..+.|...+.+...+.+.+...++..|
T Consensus 450 ~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 450 ITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 888665444444455555555555555
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-15 Score=152.42 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=106.1
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcc-cCchhHHHhhhHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY-VGRKPCLLTTGPLYIISWLLVIFTK-HVYVLYVVRFMQGLAMGIVF 106 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr-~GRr~~l~~~~~l~~i~~~~~~~a~-~~~~l~~~R~l~G~~~g~~~ 106 (478)
+++.+..+.+++.+.+........++.|+++|| +|||+++.++.+++.++..++++++ +.+.+.++|+++|++.|...
T Consensus 51 ~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~ 130 (500)
T PRK09584 51 QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFK 130 (500)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhccc
Confidence 467788888898888776666667789999999 5999999999999999999999875 56678889999999999999
Q ss_pred hhhhhhhhhcccccc--chhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHH
Q psy13206 107 TVAPMYIGEISGAKC--RGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVI 159 (478)
Q Consensus 107 ~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~ 159 (478)
+....++.|++|+++ |+...++...+.++|..+++.++. ..+||+.+....+.
T Consensus 131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~ 189 (500)
T PRK09584 131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG 189 (500)
T ss_pred CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 999999999998654 344566677777888777766654 35788888766543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-15 Score=150.08 Aligned_cols=329 Identities=12% Similarity=0.049 Sum_probs=171.6
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhc----ccCchh-HHHhhhHHHHHHHHHHHHhh------hHHHHHHHHHH
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVD----YVGRKP-CLLTTGPLYIISWLLVIFTK------HVYVLYVVRFM 97 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~D----r~GRr~-~l~~~~~l~~i~~~~~~~a~------~~~~l~~~R~l 97 (478)
..++++.+.|.+..+.-+-.++..++.|.++| |+|||+ -++.+.+..+++..+....+ .+..+++.-++
T Consensus 36 v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l 115 (473)
T PRK10429 36 VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYIL 115 (473)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 35789999999999999999999999999999 669955 55566666666655554322 13456666677
Q ss_pred Hhhhhhhhhhhhhhhhhhcc-ccccchhhhHHHHHHHHHhHHHHhhc--------CCc---cchhhHHHHHHHHHHH-HH
Q psy13206 98 QGLAMGIVFTVAPMYIGEIS-GAKCRGALSTFFIGMLNTGILLEYTV--------GPY---VDYDTLAYVSLVIPVV-FL 164 (478)
Q Consensus 98 ~G~~~g~~~~~~~~~~~E~~-p~~~Rg~~~~~~~~~~~~G~~l~~~~--------g~~---~~~~~~~~~~~~~~~~-~~ 164 (478)
.+++.....+.-.++..|.+ ++++|.+..++-..+.++|..+...+ |.. .+|+....+..++..+ .+
T Consensus 116 ~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~ 195 (473)
T PRK10429 116 WGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTI 195 (473)
T ss_pred HHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 77777777777888899999 58999998888555555543322221 211 1233333322222222 22
Q ss_pred HhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHH
Q psy13206 165 MTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIV 244 (478)
Q Consensus 165 ~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
+.+...+|.+.- .+ .++.+ +++.+.+..++..++++..+ .....
T Consensus 196 ~~~~~~~e~~~~------~~------------~~~~~--------------~~~~~~~~~~~~~~~n~~~~----~ll~~ 239 (473)
T PRK10429 196 ITLRNVHEVYSS------DN------------QVSAE--------------GSHLTLKDIVALIYKNDQLS----CLLGM 239 (473)
T ss_pred HHHcCceecCCc------cc------------ccccc--------------ccCCCHHHHHHHHhcCHHHH----HHHHH
Confidence 233334553200 00 00000 00000111222233332211 11111
Q ss_pred HHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHh
Q psy13206 245 AVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYL 324 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~ 324 (478)
.+... .+......+...+.....+..........+.++..+++.++.++++||+|||+.++.+..+..++.+.......
T Consensus 240 ~~~~~-~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
T PRK10429 240 ALAYN-IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL 318 (473)
T ss_pred HHHHH-HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111 11111111111111111111011111222334566777888899999999999988776655544333221111
Q ss_pred hcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCC-----ccc--cchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13206 325 LSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFP-----SNT--RGLAGGVTTITLTVISFLVMKMYQVI 397 (478)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p-----~~~--Rg~~~g~~~~~~~lg~~i~~~~~~~l 397 (478)
... ...+...+.........+. ..+..+++.+|..| +.. .|...|.......++..+++.+.+.+
T Consensus 319 ~~~-------~~~~~~~i~~~l~g~~~~~-~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 319 AAP-------HNALLIVIAGILLNIGTAL-FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred cCc-------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 0111111121222222221 22445677888854 334 35677788888899999999998887
Q ss_pred HHhcc
Q psy13206 398 CDHYG 402 (478)
Q Consensus 398 ~~~~g 402 (478)
.+..|
T Consensus 391 l~~~G 395 (473)
T PRK10429 391 LGLIG 395 (473)
T ss_pred HHHcC
Confidence 76544
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.8e-14 Score=136.89 Aligned_cols=338 Identities=16% Similarity=0.168 Sum_probs=193.0
Q ss_pred eecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccC-chhHHHhhhHHHHHHHHHHHHh
Q psy13206 7 GWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVG-RKPCLLTTGPLYIISWLLVIFT 85 (478)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~G-Rr~~l~~~~~l~~i~~~~~~~a 85 (478)
|.-.|.++.+.+ +.++|..|.|.+.++..+..+++++++|.++||++ +|+.+.+..++.++...+....
T Consensus 19 G~~~p~~~~~L~----------~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~ 88 (400)
T PF03825_consen 19 GAFLPYLPLYLE----------SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS 88 (400)
T ss_pred HHHHHHHHHHHH----------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566666665 34689999999999999999999999999999986 5667777777777777777788
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccc--cchhhhHHHHHHHHHhHHH-HhhcCCccch---hhHHHHHHHH
Q psy13206 86 KHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAK--CRGALSTFFIGMLNTGILL-EYTVGPYVDY---DTLAYVSLVI 159 (478)
Q Consensus 86 ~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~l-~~~~g~~~~~---~~~~~~~~~~ 159 (478)
++++.+++.-++..+......|..-++..+...++ +-|+.=.+-..++.++... +..+....++ ...+++....
T Consensus 89 ~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 168 (400)
T PF03825_consen 89 SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAIL 168 (400)
T ss_pred ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 89999998888888888888888888888877632 2243333333333333211 1111111111 1223333322
Q ss_pred HHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHH
Q psy13206 160 PVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLL 239 (478)
Q Consensus 160 ~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (478)
.++.......+|+.|. .+ +. +++ .++....+..+++++|+...-++
T Consensus 169 ~~ll~~~~l~lp~~~~---~~-~~-------------~~~-----------------~~~~~~~~~~~llk~~~~~~Fll 214 (400)
T PF03825_consen 169 SLLLAGFALFLPKTPP---KR-SA-------------KES-----------------VKKLLGLDALKLLKNPRFLVFLL 214 (400)
T ss_pred HHHHHHHHHhCCCCcc---cc-cc-------------CCC-----------------cccccchHHHHHhcCccHHHHHH
Confidence 3333333345677651 00 00 000 00011122345665554332222
Q ss_pred HHHHHHHHhhhhhhhHHHHhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHH
Q psy13206 240 IVQIVAVADVISGMSAVLPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLI 318 (478)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~ 318 (478)
...+... .......|.+.++++.++ ........-.+..+..++.-...+++..|+|.|++++++.+..++=..+
T Consensus 215 ~~~l~~~-----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l 289 (400)
T PF03825_consen 215 AAFLIGI-----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLL 289 (400)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 2222211 111222334444555443 1111111122334455666677889999999999988887766554433
Q ss_pred HHHHHhhcccccccccccchHHHHHHH----HHHHHHHhcccccchhhhcccCCccccchhhHHHHHH-HHHHHHHHHHH
Q psy13206 319 AGTYYLLSENYTVDLSKFNWIPLISIT----CFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTIT-LTVISFLVMKM 393 (478)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~-~~lg~~i~~~~ 393 (478)
.. ...+ +.+....... ..+..|+.. -.....|..+..|++.|+++.++.+.. ..+|..++..+
T Consensus 290 ~a---~~~~--------~~~~~~~~~~l~q~lhG~tf~~~-~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~i 357 (400)
T PF03825_consen 290 YA---YFSD--------PWPFIVALQLLGQLLHGLTFGLF-HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLI 357 (400)
T ss_pred HH---HhcC--------CcHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHH
Confidence 22 1111 1111111111 122222211 122346889999999999999998765 56888999999
Q ss_pred HHHHHHhcccch
Q psy13206 394 YQVICDHYGVYL 405 (478)
Q Consensus 394 ~~~l~~~~g~~~ 405 (478)
.|++.+++|...
T Consensus 358 gG~l~~~~g~~~ 369 (400)
T PF03825_consen 358 GGWLYDAFGARG 369 (400)
T ss_pred HHHHHHHhcchh
Confidence 999999877543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-14 Score=146.67 Aligned_cols=346 Identities=14% Similarity=0.073 Sum_probs=192.6
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccC-----chhHHHhhhHHHH-HHHHHHHHhhhHH-HHHHHHHHHhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVG-----RKPCLLTTGPLYI-ISWLLVIFTKHVY-VLYVVRFMQGLA 101 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~G-----Rr~~l~~~~~l~~-i~~~~~~~a~~~~-~l~~~R~l~G~~ 101 (478)
++++++.+.+...+...+...+-.+ +|+++||++ ||+.++++.++.. ++....+..++.. ...+.+++.+++
T Consensus 55 ~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 133 (468)
T TIGR00788 55 DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALA 133 (468)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 5789999999999999999999777 999999998 8888888877763 3333333334543 444589999999
Q ss_pred hhhhhhhhhhhhhhccccccchhhhHHHH---HHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHHHHhhccccCCh
Q psy13206 102 MGIVFTVAPMYIGEISGAKCRGALSTFFI---GMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVFLMTFIWMPESP 174 (478)
Q Consensus 102 ~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~---~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~pESp 174 (478)
.+...+++-.++.|..+ ++++...+... .....|.++++.++ ...+|+..+++....+++..+...++||.+
T Consensus 134 ~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 134 KALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred HHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999 55544333322 22234555544443 345788888877777766665667778863
Q ss_pred HHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhh
Q psy13206 175 YFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMS 254 (478)
Q Consensus 175 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (478)
.....+.+ ++..... ........ +..++...+.++.+++|..++.+....+. .....+..
T Consensus 213 ~~~~~~~~-~~~~~~~-------------~~~~~~~~----~~~~~~~~~l~~~l~~~~i~~~l~fifl~--~~~~~~~~ 272 (468)
T TIGR00788 213 AFVRPRIG-TYLEMNM-------------ALLTLGVL----ANVKVQILGLRGAIQLLEIAKPLIFIFLS--YANLPGAS 272 (468)
T ss_pred cccccccc-ccchhhh-------------hhhhhhHH----HHHHHHHHHHHHHHhcHHHHHHHHHHHHH--HhhcCCCC
Confidence 10000000 0000000 00000000 00000011233334433333322222110 00111110
Q ss_pred HHHH-hHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccc
Q psy13206 255 AVLP-YASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDL 333 (478)
Q Consensus 255 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 333 (478)
.... +.+ ...+.+....+......+++.+++....+++.+|++.|+++..+.++.+++.+..... ....+.....
T Consensus 273 ~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l-~~~~~~~~gi 348 (468)
T TIGR00788 273 GSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLIL-VKRWNLAFGI 348 (468)
T ss_pred ceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceee-eeccccccCC
Confidence 0000 111 0112222222333344566777788888888899999998888777766654331100 0000000000
Q ss_pred cccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy13206 334 SKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG 402 (478)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g 402 (478)
.. .+..........+.++.+..| ...+..++.|++.+|+..++.+.+.++|..+++.+.+.+.+..|
T Consensus 349 ~~-~~~~~~~~~l~~~~~g~~~~~-~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 349 SD-EVFVLGDSIIAEVLAQLKFMP-FLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred CC-eeeeeehhHHHHHHHHHHHcc-HHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 111111122223334443333 35678899999999999999999999999999988888888776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-14 Score=143.87 Aligned_cols=320 Identities=14% Similarity=0.092 Sum_probs=175.0
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcc----cCchhH-HHhhhHHHHHHHHHHHHhhh------HHHHHHHHHH
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY----VGRKPC-LLTTGPLYIISWLLVIFTKH------VYVLYVVRFM 97 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr----~GRr~~-l~~~~~l~~i~~~~~~~a~~------~~~l~~~R~l 97 (478)
..++++.+.|.+.++.-+..++..++.|+++|| +|||+. ++.+.+..+++.++....++ ++.+++.-++
T Consensus 39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l 118 (444)
T PRK09669 39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYIL 118 (444)
T ss_pred hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 468899999999999999999999999999999 888555 45666777777666555543 4566667777
Q ss_pred Hhhhhhhhhhhhhhhhhhcc-ccccchhhhHHHHHHHHHhHHHHhhcC--------C---ccchhhHHHHHHHHHHHHH-
Q psy13206 98 QGLAMGIVFTVAPMYIGEIS-GAKCRGALSTFFIGMLNTGILLEYTVG--------P---YVDYDTLAYVSLVIPVVFL- 164 (478)
Q Consensus 98 ~G~~~g~~~~~~~~~~~E~~-p~~~Rg~~~~~~~~~~~~G~~l~~~~g--------~---~~~~~~~~~~~~~~~~~~~- 164 (478)
.+.+.......-.++..|++ ++++|++..++-.....+|..+++.++ . ..+|+....+..++..+..
T Consensus 119 ~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 119 LSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 77776666666678889988 568899888877777666655544321 1 1234444433333332222
Q ss_pred HhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHH
Q psy13206 165 MTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIV 244 (478)
Q Consensus 165 ~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
+.+...+|.++ +++ + ++.+...+++..++++..+..+......
T Consensus 199 ~~~~~~~e~~~---------------------~~~-~---------------~~~~~~~~~~~~~~n~~~~~l~~~~~~~ 241 (444)
T PRK09669 199 CCFFMTKERYT---------------------PEV-D---------------NSSSVWKDLKLLLGNSQWRIMFIFNVVL 241 (444)
T ss_pred HHhCCeEEecC---------------------CCC-c---------------CCCCHHHHHHHHhCCchHHHHHHHHHHH
Confidence 22333333210 000 0 0000112334444444333222211111
Q ss_pred HHHhhhhhhhHHHHhHHHHHHhcCCCCCCc-hhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHH
Q psy13206 245 AVADVISGMSAVLPYASSTFARTEGSLITP-DECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYY 323 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~ 323 (478)
...... ......|... .. ....+. ........+..+++.++.++++||+|||+.+..+.++.++..+.+ +.
T Consensus 242 ~~~~~~--~~~~~~y~~~---~~-~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~--~~ 313 (444)
T PRK09669 242 LTAVVT--RGGATLYYVN---YV-LLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALI--FF 313 (444)
T ss_pred HHHHHH--Hhhhhheeee---ee-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH--HH
Confidence 111111 1111122111 11 110111 111112234445666778899999999998877665544332211 11
Q ss_pred hhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCC-------ccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy13206 324 LLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFP-------SNTRGLAGGVTTITLTVISFLVMKMYQV 396 (478)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p-------~~~Rg~~~g~~~~~~~lg~~i~~~~~~~ 396 (478)
. .. ...+...+.....++..+ +..+..+++.+|..+ .+..|...++.+....+|..+++.+.+.
T Consensus 314 ~-~~-------~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 314 I-PP-------SNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred h-Cc-------chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 10 011111222222222222 233567778888875 2334667788888889999999999888
Q ss_pred HHHhcc
Q psy13206 397 ICDHYG 402 (478)
Q Consensus 397 l~~~~g 402 (478)
+.+..|
T Consensus 385 ll~~~G 390 (444)
T PRK09669 385 ILAWVD 390 (444)
T ss_pred HHHHcC
Confidence 877654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-13 Score=125.58 Aligned_cols=330 Identities=11% Similarity=0.139 Sum_probs=215.0
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
|.++|.+..|+++++-.+...+.+++..+++.|+|.++.+..++++..+++.+=... +.+.++.+-.+.|.|++..-..
T Consensus 41 ~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVL 119 (395)
T COG2807 41 DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVL 119 (395)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHh
Confidence 678899999999999999999999999999999999999999999999999887776 7889999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc-----cchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY-----VDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~ 183 (478)
.+..+.|.+|++- +..++.+......|..+++.+.+. .+||....+...++++.++. |+|...|. +
T Consensus 120 LPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~--WlPq~~r~-----~- 190 (395)
T COG2807 120 LPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI--WLPQALRE-----Q- 190 (395)
T ss_pred hhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH--Hhhhcccc-----c-
Confidence 9999999999875 567777777777776666555432 25776655555555555443 33432110 0
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
.. ..+....+-.+++++|..++- .+.+..+-..++....|.|.+
T Consensus 191 -------------~~------------------~~~~~~~~~~~vw~~~~aW~v-----tLfmGlqS~~~Y~~~~WLP~i 234 (395)
T COG2807 191 -------------AA------------------SIATKLVSVRKVWRSPLAWQV-----TLFMGLQSLLYYIVIGWLPAI 234 (395)
T ss_pred -------------cc------------------ccccccccccccccCchhHHH-----HHHHHhhHHHHHHHHHHHHHH
Confidence 00 000000111223444433322 222333334556677899999
Q ss_pred HHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhc-CCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHH
Q psy13206 264 FARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRT-GRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLI 342 (478)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (478)
+.+.+.+...+...-.+..+..++.++....+++|. .+|+......+.+.+..+-+ .+.. ...+..
T Consensus 235 li~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~---~~~P----------~~~~~l 301 (395)
T COG2807 235 LIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGL---LLAP----------GQLPIL 301 (395)
T ss_pred HHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HHhh----------hhHHHH
Confidence 988876645555555556777788888888999864 45555544433333332211 1110 011111
Q ss_pred HHHHHHHHHHhcccccchh----hhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHH
Q psy13206 343 SITCFAVIYSIGLGPLVPT----LQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLN-FYIYSLGCIIC 417 (478)
Q Consensus 343 ~~~~~~~~~~~g~g~~~~~----~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~-~~~~~~~~~l~ 417 (478)
. .+.++.|.|..++. +.-..-+++.-+.-.|+...++.+.+..+|.+++.+.|..|.+.. .+.++...++.
T Consensus 302 w----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m 377 (395)
T COG2807 302 W----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLM 377 (395)
T ss_pred H----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHH
Confidence 1 23444554443322 223334566667888888999999999999999999999986543 33334333333
Q ss_pred HHHh
Q psy13206 418 GVLV 421 (478)
Q Consensus 418 ~~~~ 421 (478)
.+..
T Consensus 378 ~i~G 381 (395)
T COG2807 378 LIFG 381 (395)
T ss_pred HHHH
Confidence 3333
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-13 Score=133.78 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=103.3
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhccc-CchhHHHhhhHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV-GRKPCLLTTGPLYIISWLLVIFTK-HVYVLYVVRFMQGLAMGIVF 106 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~-GRr~~l~~~~~l~~i~~~~~~~a~-~~~~l~~~R~l~G~~~g~~~ 106 (478)
++++++.+.+++.+.+.....++++++|+++||+ |||+++.++.++..++.++.++.+ +...+.++-.+.++|.|...
T Consensus 39 ~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~ 118 (493)
T PRK15462 39 QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFK 118 (493)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccc
Confidence 3678899999999999999999999999999999 999999999999999987776543 22334445555566677777
Q ss_pred hhhhhhhhhccccc--cchhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHHH
Q psy13206 107 TVAPMYIGEISGAK--CRGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSLV 158 (478)
Q Consensus 107 ~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~ 158 (478)
+...+++.|.+|++ +|....++.....++|..+++.++.. .+|+..+..+.+
T Consensus 119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 88889999999975 78878888887788888777766543 478887766543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=155.14 Aligned_cols=166 Identities=15% Similarity=0.131 Sum_probs=123.3
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHH---HHHhhhHHHHHHHHHHHhhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLL---VIFTKHVYVLYVVRFMQGLAMGIVF 106 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~---~~~a~~~~~l~~~R~l~G~~~g~~~ 106 (478)
.+.+..+.++..+...++..+++++.|+++||+|||+.++.+.++..++... ...+++...++++|++.|++.+...
T Consensus 281 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 360 (490)
T PRK10642 281 LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFT 360 (490)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3556666778888899999999999999999999999988877655443332 2234567888899999999888888
Q ss_pred hhhhhhhhhccccccchhhhHH-HHHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHHHHHhhccccCChHHHHHc-
Q psy13206 107 TVAPMYIGEISGAKCRGALSTF-FIGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMK- 180 (478)
Q Consensus 107 ~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~- 180 (478)
.....++.|.+|++.||...++ .+.+...|.+.....+.. .+|+...+...+++++.++..+++||||+|+..+
T Consensus 361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~ 440 (490)
T PRK10642 361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA 440 (490)
T ss_pred HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence 8888899999999999987775 455444444333333321 2355555555555566566666789999999865
Q ss_pred ----CCHHHHHHHHHHHhC
Q psy13206 181 ----GRDVDARKSLFWLRG 195 (478)
Q Consensus 181 ----~~~~~a~~~l~~~~~ 195 (478)
||.|||++++.++++
T Consensus 441 ~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 441 TPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cccccchhhHHHHhhcccc
Confidence 999999999988863
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-12 Score=131.01 Aligned_cols=353 Identities=18% Similarity=0.246 Sum_probs=197.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHh-hhHHHHHHHHHHHHh-h-hHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy13206 37 SSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLT-TGPLYIISWLLVIFT-K-HVYVLYVVRFMQGLAMGIVFTVAPMYI 113 (478)
Q Consensus 37 ~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~-~~~l~~i~~~~~~~a-~-~~~~l~~~R~l~G~~~g~~~~~~~~~~ 113 (478)
.++..++..+-.++-.++.|-++|+-|+||.++. ...+..+++++..+. + +++...+.=++.-++.+.....-.+|+
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888889999999999999999998886644 444555566666664 3 344444444555567777778888899
Q ss_pred hhccccccc--------------------------hhhhHHHHHHHHHhHHHHhhcCC------cc------chhhHHHH
Q psy13206 114 GEISGAKCR--------------------------GALSTFFIGMLNTGILLEYTVGP------YV------DYDTLAYV 155 (478)
Q Consensus 114 ~E~~p~~~R--------------------------g~~~~~~~~~~~~G~~l~~~~g~------~~------~~~~~~~~ 155 (478)
.|+++++.+ ++.++.......+|.++..++.. .. ..|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999999988 88888777666666554433321 11 12222222
Q ss_pred HHHH-HHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcch
Q psy13206 156 SLVI-PVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPAN 234 (478)
Q Consensus 156 ~~~~-~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
..+. .+..+-.+.++||.|+- + ..++..+....-..+. ...+++..+ +
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~---~---------------~~~~~~~~~~~g~~~l----------~~t~k~~~~---~ 280 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGP---R---------------PLPSGSSYLRFGFKRL----------WRTFKEIRK---L 280 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC---C---------------CCCcchhHHHHHHHHH----------HHHHHHHHh---C
Confidence 2111 12223345556665521 0 0000000000111111 111222111 1
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHh-cCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCc--hhHHHhhHH
Q psy13206 235 RRSLLIVQIVAVADVISGMSAVLPYASSTFAR-TEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRR--PLLLVSCFG 311 (478)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr--~~l~~~~~~ 311 (478)
+ .+.. .++.......+...+......+..+ .+.+..+-....++..+..++|+++.+++.||+|.| ++++.+.+.
T Consensus 281 ~-~~~~-fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 281 R-QLFL-FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLIL 358 (477)
T ss_pred h-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 1 1111 1111221223444444333322222 222322333455667788889999999999999999 776666555
Q ss_pred HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccc---cchhhhcccCCccccchhhHHHHHHHHHHHH
Q psy13206 312 SGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGP---LVPTLQGEFFPSNTRGLAGGVTTITLTVISF 388 (478)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~---~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~ 388 (478)
..+..+. +.+......... ...+. +..+...++...|+ ..-++.+|+.|++..+.-+|+....+...++
T Consensus 359 ~~~i~~~-g~~G~~~~~~g~---~~~~~----f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~ 430 (477)
T PF11700_consen 359 WIIIPLY-GLFGFWPSFFGL---KSPWE----FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSW 430 (477)
T ss_pred HHHHHHH-HHHHhhhcccCc---ccHHH----HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence 4333222 111111110000 01121 22233334444443 4556889999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHhheeecCCCCC
Q psy13206 389 LVMKMYQVICDHYGV-YLNFYIYSLGCIICGVLVYFIIPESKGK 431 (478)
Q Consensus 389 i~~~~~~~l~~~~g~-~~~~~~~~~~~~l~~~~~~~~~pEt~~~ 431 (478)
++|.+++.+.+.++. ...+.... ..++.++..+..+++.|++
T Consensus 431 lGPll~g~i~~~tg~~r~g~~~l~-~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 431 LGPLLFGLITDATGSQRYGFLFLL-VLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHH-HHHHHHHHHHhhccchhhh
Confidence 999999999999884 44444444 4445555555666665544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=138.24 Aligned_cols=318 Identities=14% Similarity=0.048 Sum_probs=165.9
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhccc----CchhHH-HhhhHHHHHHHHHHHHh-----hh--HHHHHHHHH
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV----GRKPCL-LTTGPLYIISWLLVIFT-----KH--VYVLYVVRF 96 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~----GRr~~l-~~~~~l~~i~~~~~~~a-----~~--~~~l~~~R~ 96 (478)
..++++.+.|.+.++..+..++..++.|+++||. |||+.. ..+.+...+.+.+.... ++ .+.+++.-+
T Consensus 38 ~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (448)
T PRK09848 38 VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYM 117 (448)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHH
Confidence 4578999999999999999999999999999996 777755 45555454444443211 11 223444556
Q ss_pred HHhhhhhhhhhhhhhhhhhcccc-ccchhhhHHHHHH-----HHHhHHHHhhcCCcc------chhhHHHHHHHHHHHH-
Q psy13206 97 MQGLAMGIVFTVAPMYIGEISGA-KCRGALSTFFIGM-----LNTGILLEYTVGPYV------DYDTLAYVSLVIPVVF- 163 (478)
Q Consensus 97 l~G~~~g~~~~~~~~~~~E~~p~-~~Rg~~~~~~~~~-----~~~G~~l~~~~g~~~------~~~~~~~~~~~~~~~~- 163 (478)
+.+++.+...+...++..|..++ ++|.+..++-+.+ ...+..+++.+++.. .|..+..+..++.++.
T Consensus 118 ~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~ 197 (448)
T PRK09848 118 GLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLY 197 (448)
T ss_pred HHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 77877777777767777776654 6788776655433 223334444433322 1212222222222222
Q ss_pred HHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHH
Q psy13206 164 LMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQI 243 (478)
Q Consensus 164 ~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (478)
++.+...||++. + +.+ +.....+++.+++++..+........
T Consensus 198 ~~~~~~~~e~~~----~----------------~~~------------------~~~~~~~~~~l~~n~~f~~~~~~~~~ 239 (448)
T PRK09848 198 FICFKSTRENVV----R----------------IVA------------------QPSLKISLQTLKRNRPLFMLCIGALC 239 (448)
T ss_pred HHHHcCcEeccC----C----------------Ccc------------------CCCHHHHHHHHhCCchHHHHHHHHHH
Confidence 223333455421 0 000 00011123445554433222111111
Q ss_pred HHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHH--HH-HHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHH
Q psy13206 244 VAVADVISGMSAVLPYASSTFARTEGSLITPDECTL--LL-GILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAG 320 (478)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~ 320 (478)
. ..+......+.+.++....+ ..+....+ .. .+..+++.++.+++.||+|+|+.+..+.++.+++.+.+.
T Consensus 240 ~-----~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~ 312 (448)
T PRK09848 240 V-----LISTFAVSASSLFYVRYVLN--DTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF 312 (448)
T ss_pred H-----HHHHHHHhhhheeeEeeecC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 11111221122222222111 11221111 11 234556778889999999999999888776666544332
Q ss_pred HHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCc-------cccchhhHHHHHHHHHHHHHHHHH
Q psy13206 321 TYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPS-------NTRGLAGGVTTITLTVISFLVMKM 393 (478)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~-------~~Rg~~~g~~~~~~~lg~~i~~~~ 393 (478)
...+ ...+..........+..+.. .+...++.+|..|. +.+|...|+.+....+|..+++.+
T Consensus 313 ---~~~~-------~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i 381 (448)
T PRK09848 313 ---WVSV-------WSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSI 381 (448)
T ss_pred ---HcCc-------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 1110 01111111122222222221 23345566676654 345888999999999999999999
Q ss_pred HHHHHHhcc
Q psy13206 394 YQVICDHYG 402 (478)
Q Consensus 394 ~~~l~~~~g 402 (478)
.+.+.+..|
T Consensus 382 ~g~~l~~~G 390 (448)
T PRK09848 382 PAFILGLSG 390 (448)
T ss_pred HHHHHHHcC
Confidence 888766544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-12 Score=120.19 Aligned_cols=347 Identities=16% Similarity=0.160 Sum_probs=195.7
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhhcccCchhHH-HhhhHHHHHHHHHHHHhhh---HHHHHHHHHHHhhhhhhhhhhhh
Q psy13206 35 AESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCL-LTTGPLYIISWLLVIFTKH---VYVLYVVRFMQGLAMGIVFTVAP 110 (478)
Q Consensus 35 ~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l-~~~~~l~~i~~~~~~~a~~---~~~l~~~R~l~G~~~g~~~~~~~ 110 (478)
+-.+...++.-+-.++-+++.|.++|+.|+||.. -+..++.++++.+..++++ .+..+.+-.+..++.......-.
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 3357777888888889999999999999988855 4455555667777777765 45556666777888888888888
Q ss_pred hhhhhccccccchhhhHHHHHHHHHhHHHHhhc-------CCc---------------cchhhHHHHHHHHHHH-HHHhh
Q psy13206 111 MYIGEISGAKCRGALSTFFIGMLNTGILLEYTV-------GPY---------------VDYDTLAYVSLVIPVV-FLMTF 167 (478)
Q Consensus 111 ~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~-------g~~---------------~~~~~~~~~~~~~~~~-~~~~~ 167 (478)
+++.+..++++-|+.++..-..-.+|.++...+ ++. .+-|..+.+....-.+ .+-.+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 999999999888887655433333333222111 111 0112111111111111 11112
Q ss_pred ccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHH
Q psy13206 168 IWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVA 247 (478)
Q Consensus 168 ~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (478)
++.|+-++ ...+..+.......+. ..++++..+.+ .....++. ..
T Consensus 218 ~~v~~~~~--------------------~~~~~~~~l~~g~k~L----------~~t~k~i~~~~-~i~~FLiA----~~ 262 (438)
T COG2270 218 LNVHDAEK--------------------ISSPPPTALRNGFKEL----------KSTFKEIRGRK-NLVLFLIA----RF 262 (438)
T ss_pred hccccccc--------------------ccccchHHHHHHHHHH----------HHHHHHHhccc-chHHHHHH----HH
Confidence 22222221 0000000011111111 12233332222 11111111 11
Q ss_pred hhhhhhhHHHHhHHHHHHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhc
Q psy13206 248 DVISGMSAVLPYASSTFART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLS 326 (478)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~ 326 (478)
..-.|..+++.....+-... +.+..+-........+..++|+++.|++.||+|-|+++..+.++..+.++.. ...
T Consensus 263 ~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~----~~~ 338 (438)
T COG2270 263 FYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYL----IFL 338 (438)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHH----HHc
Confidence 12234444444333222212 1122233345566788899999999999999999999888877665544332 111
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhcccc---cchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy13206 327 ENYTVDLSKFNWIPLISITCFAVIYSIGLGP---LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGV 403 (478)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~---~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~ 403 (478)
+. -...+.++...+...|| ..-+|-.++.|++.-++-+|+.+..++..++.+|.+++.+.+.++.
T Consensus 339 ~~------------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 339 EG------------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred cc------------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 10 01122233333444444 3456889999999999999999999999999999999999888875
Q ss_pred chHHHHHHHHHHHHHHHhheeecCCCCCC
Q psy13206 404 YLNFYIYSLGCIICGVLVYFIIPESKGKT 432 (478)
Q Consensus 404 ~~~~~~~~~~~~l~~~~~~~~~pEt~~~~ 432 (478)
.-.-+...+..+..+++.+..+|+.++++
T Consensus 407 ~r~g~~~i~vll~iGl~~L~~v~~~~~~~ 435 (438)
T COG2270 407 SRAGVLSIIVLLLIGLLLLLRVKVPGRRE 435 (438)
T ss_pred hhhHHHHHHHHHHhhHhhEEeecCCCCcc
Confidence 32222333344555666667777764443
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-14 Score=124.01 Aligned_cols=329 Identities=15% Similarity=0.114 Sum_probs=187.5
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcc-cCchhHHHhhhHHHHHHHHHH---HHhhhHHHHHHHHHHHhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY-VGRKPCLLTTGPLYIISWLLV---IFTKHVYVLYVVRFMQGLAMGI 104 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr-~GRr~~l~~~~~l~~i~~~~~---~~a~~~~~l~~~R~l~G~~~g~ 104 (478)
|.+++..+..++-|+|....++-.+++|++.|| +|-|..-++-+.+..++-+.. +.++.+|.+.++||+.|+|.-.
T Consensus 73 d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgES 152 (459)
T KOG4686|consen 73 DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGES 152 (459)
T ss_pred ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchh
Confidence 567777788999999999999999999999997 477776655555555665554 3457899999999999999877
Q ss_pred hhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCcc-ch---------hh-HHHHHHHHHHHHHHhhccccCC
Q psy13206 105 VFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV-DY---------DT-LAYVSLVIPVVFLMTFIWMPES 173 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~-~~---------~~-~~~~~~~~~~~~~~~~~~~pES 173 (478)
...+...|..-|+..++-+.+.++.....-+|..+-..+-+++ +. ++ +..+.+ +.... +..|
T Consensus 153 lAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~-~~~~t------c~~s 225 (459)
T KOG4686|consen 153 LAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLC-FEVKT------CKQS 225 (459)
T ss_pred hhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHH-HHHHH------HHHH
Confidence 7888899999999999999999988888888875543333221 00 10 000000 00000 0000
Q ss_pred hHHHHHcCC-HHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhh
Q psy13206 174 PYFLIMKGR-DVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISG 252 (478)
Q Consensus 174 p~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (478)
---....|- .++|++.+.+-.+.-.+ .++ +.+... .....+...++.++ ....
T Consensus 226 lical~lg~~D~rAerilh~e~g~~Ge--------------------~pk--Ltdv~~---f~ppfw~~~iicv~-yyva 279 (459)
T KOG4686|consen 226 LICALSLGLSDDRAERILHLEEGFLGE--------------------EPK--LTDVNT---FYPPFWVLVIICVL-YYVA 279 (459)
T ss_pred HHHHHHhhhhhhHHHHHHhhhcCcccC--------------------Ccc--cccccc---cCccHHHHHHHHHH-HHHH
Confidence 000111111 12233333221111000 000 111100 00111111111111 0111
Q ss_pred hhHHHHhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccc
Q psy13206 253 MSAVLPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTV 331 (478)
Q Consensus 253 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 331 (478)
++.+....+..+.+..+ +...+............+.+.+.|.++||.||+-.+..+..+..+..-..-.+..
T Consensus 280 ~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~------- 352 (459)
T KOG4686|consen 280 WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF------- 352 (459)
T ss_pred HHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh-------
Confidence 22222334455554333 3333333334445566677888999999999997766554433332222111111
Q ss_pred cccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy13206 332 DLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVY 404 (478)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~ 404 (478)
+.+.+.....+..|..-. ...|.+++-+.|.+.-||+.|.+..+.++|-.+.|.+.+.+.++-|.+
T Consensus 353 ------lsPy~~m~~lGLsysllA-cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y 418 (459)
T KOG4686|consen 353 ------LSPYTSMTFLGLSYSLLA-CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY 418 (459)
T ss_pred ------ccHHHHHHHHhhhHHHHH-HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch
Confidence 123334444444443211 124555666778899999999999999999999999999988876654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-13 Score=132.76 Aligned_cols=323 Identities=18% Similarity=0.225 Sum_probs=195.3
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhc----ccCchhHHH-hhhHHHHHHHHHHHHh-h-------hHHHHHHHH
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVD----YVGRKPCLL-TTGPLYIISWLLVIFT-K-------HVYVLYVVR 95 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~D----r~GRr~~l~-~~~~l~~i~~~~~~~a-~-------~~~~l~~~R 95 (478)
..++++...|.+..+..+-.++-.++.|.++| |+|||+..+ ++.++..++..+.... + ....+.+.-
T Consensus 31 ~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~ 110 (428)
T PF13347_consen 31 VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFY 110 (428)
T ss_pred HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHH
Confidence 35788999999999999999999999999999 899888765 5667777777776655 4 234467777
Q ss_pred HHHhhhhhhhhhhhhhhhhhccc-cccchhhhHHHHHHHHHhHHHHhhcCCc-c----------chhhHHHHHHHHHHHH
Q psy13206 96 FMQGLAMGIVFTVAPMYIGEISG-AKCRGALSTFFIGMLNTGILLEYTVGPY-V----------DYDTLAYVSLVIPVVF 163 (478)
Q Consensus 96 ~l~G~~~g~~~~~~~~~~~E~~p-~~~Rg~~~~~~~~~~~~G~~l~~~~g~~-~----------~~~~~~~~~~~~~~~~ 163 (478)
++..++.......-.++..|.++ +++|.+..++-+.+..+|.++...+.+. . +|++...+..++.++.
T Consensus 111 ~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~ 190 (428)
T PF13347_consen 111 ILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVF 190 (428)
T ss_pred HHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHH
Confidence 77788888888888999999998 5799999999888888887644443321 1 3555444443333332
Q ss_pred H-HhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHH
Q psy13206 164 L-MTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQ 242 (478)
Q Consensus 164 ~-~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (478)
. +.....+|.++ +.+ ..+++.+..+.++..+++|..++......
T Consensus 191 ~~i~~~~~ke~~~---------------------~~~--------------~~~~~~~~~~~~~~~~~nr~~~~l~~~~~ 235 (428)
T PF13347_consen 191 FLITFFFVKERSV---------------------EVT--------------EQEKKISLRDSLRSLFRNRPFRILLLAFF 235 (428)
T ss_pred hhhhhheeeeccc---------------------ccc--------------ccccccccccchhhhcccchHHHHHHHHH
Confidence 2 23334455100 000 00011122344556666554333222222
Q ss_pred HHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHH
Q psy13206 243 IVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTY 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~ 322 (478)
..... .. .......|... ..-+.............+..+++.++.++++||+|+|+.+..+..+.+++.+.+...
T Consensus 236 ~~~~~-~~-~~~~~~~y~~~---~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 236 LQWLA-FA-LMNTFLPYYFT---YVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL 310 (428)
T ss_pred HHHhh-hh-hhhhHHHHHHH---HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence 11111 11 11222223222 211111122233344566777888889999999999999988888877766554322
Q ss_pred HhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCc-------cccchhhHHHHHHHHHHHHHHHHHHH
Q psy13206 323 YLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPS-------NTRGLAGGVTTITLTVISFLVMKMYQ 395 (478)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~-------~~Rg~~~g~~~~~~~lg~~i~~~~~~ 395 (478)
.. . ..+..++.....+++.+ +.....+++.+|+.+. +..|...|+.+....++..+++.+.+
T Consensus 311 ~~--~--------~~~~~~i~~~l~gi~~~-~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 311 GP--G--------SPWLVLILFILAGIGYG-AFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred Hh--h--------hHHHHHHHHHHhHhhhc-ccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 11 0 11222222222222222 2235567788888863 34488888889999999999999888
Q ss_pred HHHHhcc
Q psy13206 396 VICDHYG 402 (478)
Q Consensus 396 ~l~~~~g 402 (478)
.+.+..|
T Consensus 380 ~~l~~~G 386 (428)
T PF13347_consen 380 LLLALVG 386 (428)
T ss_pred HHHHHhC
Confidence 7766543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-11 Score=121.81 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=88.2
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcc----cCchhHHHh-hhHHHHHHHHHHHHhhh------HHHHHHHHHH
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY----VGRKPCLLT-TGPLYIISWLLVIFTKH------VYVLYVVRFM 97 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr----~GRr~~l~~-~~~l~~i~~~~~~~a~~------~~~l~~~R~l 97 (478)
..++++...|.+..+.-+-.++.-++.|.++|| +|||+..++ +.+...++.++.-..+. +..+.+.=++
T Consensus 39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~ 118 (460)
T PRK11462 39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTL 118 (460)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 467888889999999999999999999999996 799877654 55677777666554442 3445556666
Q ss_pred Hhhhhhhhhhhhhhhhhhccc-cccchhhhHHHHHHHHHhHHHHhhc
Q psy13206 98 QGLAMGIVFTVAPMYIGEISG-AKCRGALSTFFIGMLNTGILLEYTV 143 (478)
Q Consensus 98 ~G~~~g~~~~~~~~~~~E~~p-~~~Rg~~~~~~~~~~~~G~~l~~~~ 143 (478)
..++.......-.++..|.++ +++|.+..++-..+..+|..+++.+
T Consensus 119 ~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~ 165 (460)
T PRK11462 119 LTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL 165 (460)
T ss_pred HHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777788899998 7999999998888888776555443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-13 Score=127.63 Aligned_cols=348 Identities=14% Similarity=0.153 Sum_probs=170.5
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHH--HHHHHH-HHhh----hHH-HHHHHHHHHhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYI--ISWLLV-IFTK----HVY-VLYVVRFMQGLA 101 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~--i~~~~~-~~a~----~~~-~l~~~R~l~G~~ 101 (478)
.++|.+|.|.+.|+..+..++.+++.|.++||.|.||-++..+.+.. .+.+.. .+.| |++ ..+++=...|+.
T Consensus 38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~ 117 (412)
T PF01306_consen 38 AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLV 117 (412)
T ss_dssp H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999998776654433322 222222 2222 221 223333334444
Q ss_pred hhhhhhhhhhhhhhccccc--cchhhhHHHHHHHHHhHHHHhhcCCccchhhHHHHHHHHHHHHHHh-hccccCChHHHH
Q psy13206 102 MGIVFTVAPMYIGEISGAK--CRGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMT-FIWMPESPYFLI 178 (478)
Q Consensus 102 ~g~~~~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~pESp~~l~ 178 (478)
..+..++.=+|+.++..++ +-|+.=.+-..++.++..++..+-. .+-+..+|++....++..+. ...-|+.++...
T Consensus 118 f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~ 196 (412)
T PF01306_consen 118 FNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAE 196 (412)
T ss_dssp TTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-
T ss_pred HcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhh
Confidence 5555566555555544432 2255544555555555444332221 12234455544444433333 223333321000
Q ss_pred HcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHH
Q psy13206 179 MKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLP 258 (478)
Q Consensus 179 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (478)
. .+.... ++++...++..++++.|+.+.-.+..... .+.+..+=.
T Consensus 197 ~-----------------~~~~~~-------------~~~~~~~~~~~~l~k~~~fw~~~l~v~g~-----~~~Y~vfdq 241 (412)
T PF01306_consen 197 V-----------------ADALGA-------------KKDKVSLKDVLSLFKMRNFWFFVLFVIGV-----AAIYDVFDQ 241 (412)
T ss_dssp S-----------------STTSSS-------------------HHHHHHHTTSHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred h-----------------hccccc-------------CCCCCcHHHHHHHhcchhHHHHHHHHHHH-----HHHHHHHHH
Confidence 0 000000 00000112234455444332211111111 111111111
Q ss_pred hHHHHHHhcCCCC-CCchhhH---HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccccc
Q psy13206 259 YASSTFARTEGSL-ITPDECT---LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLS 334 (478)
Q Consensus 259 ~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (478)
..+.++.....+. .+....+ .+-.+..++.-.+..++.+|+|-|+.++++..++.+=....+. .+
T Consensus 242 qf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~----~~------- 310 (412)
T PF01306_consen 242 QFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF----AT------- 310 (412)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh----hc-------
Confidence 1222222211110 0111122 2233445566677889999999999988876665554333221 00
Q ss_pred ccchHHHHHHHHHHHHHHhcccc---cchhhhcccCCccccchhhHHH-HHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q psy13206 335 KFNWIPLISITCFAVIYSIGLGP---LVPTLQGEFFPSNTRGLAGGVT-TITLTVISFLVMKMYQVICDHYGVYLNFYIY 410 (478)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~g~g~---~~~~~~~El~p~~~Rg~~~g~~-~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~ 410 (478)
..+. +...-...+.-..- ...=|.++.+|++..++...+. +....++..+.+...|.+.++.|....+++.
T Consensus 311 -~~~~----i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylim 385 (412)
T PF01306_consen 311 -NPWV----ISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIM 385 (412)
T ss_dssp -SHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHH
Confidence 1111 11111111111100 1223778999999999998886 5667888899999999999999876677777
Q ss_pred HHHHHHHHHHhheeecCCC
Q psy13206 411 SLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 411 ~~~~~l~~~~~~~~~pEt~ 429 (478)
+...+...++..+.++..+
T Consensus 386 g~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 386 GLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHHHHheeeecCCC
Confidence 7777777777777665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-11 Score=115.74 Aligned_cols=268 Identities=11% Similarity=0.087 Sum_probs=152.7
Q ss_pred HhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc-----------------
Q psy13206 84 FTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----------------- 146 (478)
Q Consensus 84 ~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----------------- 146 (478)
...+|+.++++=|+.|.|.+..-+.+..|+++..|++++.+..++.+.+..+|.++++.++..
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 457899999999999999999999999999999999999999999999999999888887541
Q ss_pred ---cchhhHHHHHHHHHHHHHHh--hccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhcc
Q psy13206 147 ---VDYDTLAYVSLVIPVVFLMT--FIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKL 221 (478)
Q Consensus 147 ---~~~~~~~~~~~~~~~~~~~~--~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (478)
.+|+..++....+..+..+. +.-+||... ++.+ +.. +++...
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~--------~~~~-------------------~~~------~~~~~~ 132 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE--------ADVA-------------------RVS------SGDTTQ 132 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc--------cccc-------------------ccc------cccccc
Confidence 13444444232222222222 223455310 0000 000 000000
Q ss_pred chhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhc---CCCCCCchhhHHHHHHHHHHHhhhhhHhhhh
Q psy13206 222 SDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFART---EGSLITPDECTLLLGILVFLSTFPTAFLVDR 298 (478)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr 298 (478)
+ ++.++ ++...... +.++.....-.....|.+.++.+. +.+...............++|.+.++++.||
T Consensus 133 ~---~~~~~----~~~~~l~~-~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r 204 (310)
T TIGR01272 133 K---TSAFQ----FTHLVLGA-LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM 204 (310)
T ss_pred h---hhHHh----hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01111 11122221 112211222334445666655432 2222222333444556677899999999999
Q ss_pred cCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHH
Q psy13206 299 TGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGV 378 (478)
Q Consensus 299 ~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~ 378 (478)
+|+|+++..+..++.+..++.. . .+ .......+..++++.+ ...|...+...+.+|++ .+++.++
T Consensus 205 ~g~~~~l~~~~~l~~~~~~l~~---~-~~---------~~~~~~~~~l~g~~~s-~i~P~~~s~a~~~~~~~-~~~asai 269 (310)
T TIGR01272 205 ISQGRYLAFNAFLAVLLSIGAA---L-TH---------GYVAMWFVLALGLFNS-IMFPTIFSLALNALGRH-TSQGSGI 269 (310)
T ss_pred hCHHHHHHHHHHHHHHHHHHHH---H-cC---------CHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhh-hhhhHHH
Confidence 9999988776665555432221 1 00 1111222222222111 22344444556766654 5667776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q psy13206 379 TTITLTVISFLVMKMYQVICDHYGVYLNFY 408 (478)
Q Consensus 379 ~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~ 408 (478)
. ..+.+|+.+.|.+.+.+.+..+...+++
T Consensus 270 ~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 270 L-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred H-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 5 6778999999999999999888666554
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.1e-13 Score=111.05 Aligned_cols=134 Identities=22% Similarity=0.397 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccc
Q psy13206 40 VVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGA 119 (478)
Q Consensus 40 ~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~ 119 (478)
+.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...++++++.+.+.+++.|++.+...+....++.|..|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHH-hhccccCC
Q psy13206 120 KCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLM-TFIWMPES 173 (478)
Q Consensus 120 ~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~-~~~~~pES 173 (478)
++|++..+..+.....|..+++.++. ..+|+..++.......+..+ .+...||+
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999998888888777666554 34676666655544444333 33334553
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-11 Score=116.33 Aligned_cols=325 Identities=18% Similarity=0.172 Sum_probs=184.1
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcc----cCchhHHH-hhhHHHHHHHHHHHHhhh------HHHHHHHHHH
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY----VGRKPCLL-TTGPLYIISWLLVIFTKH------VYVLYVVRFM 97 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr----~GRr~~l~-~~~~l~~i~~~~~~~a~~------~~~l~~~R~l 97 (478)
..++++...|.+..+-=+=.++.-++.|.+.|| +||||..+ .+.+..++.+.++-.+++ ..-.++.=.+
T Consensus 42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l 121 (467)
T COG2211 42 VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYML 121 (467)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHH
Confidence 456788888888887778889999999999996 68877654 455778888888877773 4556667778
Q ss_pred Hhhhhhhhhhhhhhhhhhccc-cccchhhhHHHHHHHHHhHHHHhhcC-C----------ccchhhHHHHHHHHHHHHH-
Q psy13206 98 QGLAMGIVFTVAPMYIGEISG-AKCRGALSTFFIGMLNTGILLEYTVG-P----------YVDYDTLAYVSLVIPVVFL- 164 (478)
Q Consensus 98 ~G~~~g~~~~~~~~~~~E~~p-~~~Rg~~~~~~~~~~~~G~~l~~~~g-~----------~~~~~~~~~~~~~~~~~~~- 164 (478)
.|++-......-.++..|.++ +++|.+..++-+.+.+.|.++...+- | ..+|+....+..++.++..
T Consensus 122 ~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l 201 (467)
T COG2211 122 LGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLL 201 (467)
T ss_pred HHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 888888888888888899886 69999999999999888865543322 2 1234333333333332222
Q ss_pred HhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHH
Q psy13206 165 MTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIV 244 (478)
Q Consensus 165 ~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
.++....|-+. |+ .+.+ + ..+++.+.++...++++..+..+...+..
T Consensus 202 ~~~~~v~ER~~---------~~---------~~~~--~-------------~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~ 248 (467)
T COG2211 202 FCFFNVKERVV---------ET---------QPTK--T-------------GVKLKLKDSFLLIFKNRPLLLLLLMNLLL 248 (467)
T ss_pred HHHHHhhcccC---------cc---------ccCc--c-------------cccccHHHHHHHHHccchHHHHHHHHHHH
Confidence 22222333221 00 0000 0 00011122333445544443333321111
Q ss_pred HHHhhhhhhhHHHHhHHHHHHhcCCC-CCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHH
Q psy13206 245 AVADVISGMSAVLPYASSTFARTEGS-LITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYY 323 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~ 323 (478)
... ..-......|. ....-+. ...+...........+++.++..++++|+|+|+++.++.++..+..+.+-
T Consensus 249 ~~~--~~i~~s~~~yy---~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~--- 320 (467)
T COG2211 249 FIA--FNIRGSIMVYY---VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLY--- 320 (467)
T ss_pred HHH--HHHHhhhhhee---EEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHH---
Confidence 111 11111111221 1111111 11122222333444445577889999999999999998777776655432
Q ss_pred hhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCC-----cccc--chhhHHHHHHHHHHHHHHHHHHHH
Q psy13206 324 LLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFP-----SNTR--GLAGGVTTITLTVISFLVMKMYQV 396 (478)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p-----~~~R--g~~~g~~~~~~~lg~~i~~~~~~~ 396 (478)
.... +..++.++..+...+..+ ...+..|++.+|..+ +..| |...+....+..+|..++..+.++
T Consensus 321 f~~~-------~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 321 FTPA-------GSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred hhcC-------cchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111222222222222222 235678888887762 3333 677777888888999998888888
Q ss_pred HHHhcc
Q psy13206 397 ICDHYG 402 (478)
Q Consensus 397 l~~~~g 402 (478)
..+..|
T Consensus 393 ~L~~~G 398 (467)
T COG2211 393 ILGAIG 398 (467)
T ss_pred HHHHcC
Confidence 776554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-12 Score=132.82 Aligned_cols=137 Identities=14% Similarity=0.080 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q psy13206 38 SWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEIS 117 (478)
Q Consensus 38 ~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~ 117 (478)
.+...+..++.++|+++.|+++||+|||++++++.++.+++.++.+++++...+++++++.|+..++.+++..++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566778999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHhHHHHhhcCCcc---chhhHHHHHHHHHHHHHHhhccccCCh
Q psy13206 118 GAKCRGALSTFFIGMLNTGILLEYTVGPYV---DYDTLAYVSLVIPVVFLMTFIWMPESP 174 (478)
Q Consensus 118 p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~pESp 174 (478)
|.+.||...++......+|.++++.++..+ .....+.+..+..++..+...++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999988776432 223344444444455455555679874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.3e-10 Score=105.81 Aligned_cols=347 Identities=11% Similarity=0.128 Sum_probs=196.2
Q ss_pred CcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh------hHH--HHHHHHHHHhhhhhh
Q psy13206 33 TSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK------HVY--VLYVVRFMQGLAMGI 104 (478)
Q Consensus 33 ~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~------~~~--~l~~~R~l~G~~~g~ 104 (478)
+.+..-|+.-+|.+-++.-.+++-|+.|++|-|..+.++..+..+++.+-..+. .++ ....+..+.+.+.--
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~F 156 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPF 156 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhH
Confidence 455567888899999999999999999999999999999999999998877663 334 666777777777555
Q ss_pred hhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCcc----------chhh--HHHHHHHHHHHH-HH---hhc
Q psy13206 105 VFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV----------DYDT--LAYVSLVIPVVF-LM---TFI 168 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~----------~~~~--~~~~~~~~~~~~-~~---~~~ 168 (478)
....-.-...-|+|+++|..+......+..+|..++.++.|.+ .|.. ++.....+..+. .+ .+.
T Consensus 157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~ 236 (480)
T KOG2563|consen 157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFT 236 (480)
T ss_pred hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5555456667799999999988877776667777776666532 2221 121111111111 11 111
Q ss_pred cccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHh
Q psy13206 169 WMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVAD 248 (478)
Q Consensus 169 ~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (478)
..|-+|.-. .+ ..+++..-..+.++.+++++ ..+.. +....
T Consensus 237 ~~P~tPps~--------------------------s~--------~~~~~~~f~~si~~~~~n~~---F~il~--~~ygi 277 (480)
T KOG2563|consen 237 KKPPTPPSA--------------------------SQ--------AALQDASFPKSIKSCFKNRQ---FIILA--ICYGI 277 (480)
T ss_pred CCCCCCCch--------------------------hH--------hhhhcCcHHHHHHHHHcCcc---HHHHH--HHHhh
Confidence 122222100 00 00011112334555554332 22221 11111
Q ss_pred hhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchh-HHHhhHHHHHHHHHHHHHHhhcc
Q psy13206 249 VISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPL-LLVSCFGSGISQLIAGTYYLLSE 327 (478)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~-l~~~~~~~~i~~~~~~~~~~~~~ 327 (478)
.+..++.+...+...+...+..+..++....+..+..+++++..|.++||...-+. .++......++...+..+. ..
T Consensus 278 ~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t--~~ 355 (480)
T KOG2563|consen 278 GLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT--LF 355 (480)
T ss_pred hHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--cc
Confidence 11111121111111122222233466777888888899999999999999876654 3333333333321111111 11
Q ss_pred cccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc----c
Q psy13206 328 NYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG----V 403 (478)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g----~ 403 (478)
.. ..+........ ..++..+.-|+-.-+-.|..-|..-++..|+.+..+.+.+.+..+..+...+..+ .
T Consensus 356 ~~------~~viv~~t~~~-~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~ 428 (480)
T KOG2563|consen 356 LG------DSVIVFTTCGL-LGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNT 428 (480)
T ss_pred CC------ceEehhhhHHH-HHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCC
Confidence 00 01111112222 2234445556555677788777778999999999999999888888888887776 4
Q ss_pred chHHHHHHHHHHHHHHHhheeecC
Q psy13206 404 YLNFYIYSLGCIICGVLVYFIIPE 427 (478)
Q Consensus 404 ~~~~~~~~~~~~l~~~~~~~~~pE 427 (478)
+..-++....+.+..+++.++.|+
T Consensus 429 ~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 429 FPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred ccchhHhHHHHHHHHHHHhhhhhh
Confidence 333334444444555555555443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=114.60 Aligned_cols=137 Identities=20% Similarity=0.198 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc--
Q psy13206 278 TLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL-- 355 (478)
Q Consensus 278 ~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-- 355 (478)
.....++.+++.++.|+++||+|||+.+..+.++.+++.++.... + ++. . +....++.+.+.
T Consensus 58 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~---------~~~-~--~~~~~~~~g~~~~~ 121 (398)
T TIGR00895 58 FSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA----T---------NVT-Q--LLILRFLAGLGLGG 121 (398)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc----c---------chH-H--HHHHHHHHhccccc
Confidence 334456667888999999999999999988877776665543311 1 011 1 111222333333
Q ss_pred -cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCC
Q psy13206 356 -GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKG 430 (478)
Q Consensus 356 -g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~ 430 (478)
.+....+.+|.+|++.|+++.++.+....+|..+++.+.+.+.+..++...+++.++...+..++.+.++||+..
T Consensus 122 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 122 LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID 197 (398)
T ss_pred chhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence 345567889999999999999999999999999999999998888887777777655666666666677888753
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-10 Score=112.53 Aligned_cols=164 Identities=20% Similarity=0.198 Sum_probs=110.2
Q ss_pred hhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccc
Q psy13206 252 GMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTV 331 (478)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 331 (478)
+.....+..+...++.+.+............++..++.++.|+++||+|||+.+..+.++.++..+..... +
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----~---- 91 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS----N---- 91 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH----c----
Confidence 34444455555444443332233334444566677889999999999999999988877777665543321 1
Q ss_pred cccccchHHHHHHHHHHHHHHhccc---ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q psy13206 332 DLSKFNWIPLISITCFAVIYSIGLG---PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFY 408 (478)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~g~g---~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~ 408 (478)
++.. +....+..+.+.+ +....+.+|.+|++.|+++.++.+....++..+++.+.+.+.+..++...++
T Consensus 92 -----~~~~---~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 163 (385)
T TIGR00710 92 -----NIET---LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA 163 (385)
T ss_pred -----cHHH---HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 1111 1112223333332 3455688999999999999999999999999999999998888888877777
Q ss_pred HHHHHHHHHHHHhheeecCCCCC
Q psy13206 409 IYSLGCIICGVLVYFIIPESKGK 431 (478)
Q Consensus 409 ~~~~~~~l~~~~~~~~~pEt~~~ 431 (478)
+.++..++..+..++..||++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 164 FLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC
Confidence 77766666666666677887544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.7e-10 Score=109.25 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc--
Q psy13206 278 TLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL-- 355 (478)
Q Consensus 278 ~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-- 355 (478)
.....++..+++++.|++.||+|||+++..+.++.++..+..... + ++.. +....++.+.+.
T Consensus 49 ~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----~---------~~~~---l~~~r~l~G~~~~~ 112 (412)
T TIGR02332 49 ATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA----T---------GPES---LYLLRILVGIAEAG 112 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh----c---------CHHH---HHHHHHHHHHHHhh
Confidence 334455667888999999999999999988888877766654321 1 0111 111222223322
Q ss_pred -cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH------hcccchHHHHHHHHHHHHHHHhheeecCC
Q psy13206 356 -GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD------HYGVYLNFYIYSLGCIICGVLVYFIIPES 428 (478)
Q Consensus 356 -g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~------~~g~~~~~~~~~~~~~l~~~~~~~~~pEt 428 (478)
.|....+.+|.+|++.|+++.++.+....+|..+++.+.+++.+ ..|+...|++.++..++.+++.++++||+
T Consensus 113 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~ 192 (412)
T TIGR02332 113 FLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDS 192 (412)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCC
Confidence 24445678999999999999999999999999999988887764 25777888877777777777777788988
Q ss_pred CC
Q psy13206 429 KG 430 (478)
Q Consensus 429 ~~ 430 (478)
+.
T Consensus 193 p~ 194 (412)
T TIGR02332 193 PD 194 (412)
T ss_pred cc
Confidence 64
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-12 Score=129.98 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=3.0
Q ss_pred CcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh--------------------
Q psy13206 27 ETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK-------------------- 86 (478)
Q Consensus 27 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~-------------------- 86 (478)
|+.+++++.+.|++.+.+-++.++..++..++++|..|-+.+-++.++++++++++++-+
T Consensus 30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 346889999999999999999999999999999998888888899999999998875410
Q ss_pred ------------------------------hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHh
Q psy13206 87 ------------------------------HVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTG 136 (478)
Q Consensus 87 ------------------------------~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G 136 (478)
.+..++++.++.|+|....++.+.+|+-|..++++-+.+.+.......+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 04689999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC
Q psy13206 137 ILLEYTVGP 145 (478)
Q Consensus 137 ~~l~~~~g~ 145 (478)
+.+|+++|.
T Consensus 190 Pa~Gf~lg~ 198 (539)
T PF03137_consen 190 PALGFLLGS 198 (539)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999888874
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.8e-10 Score=109.82 Aligned_cols=143 Identities=19% Similarity=0.146 Sum_probs=101.4
Q ss_pred hhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhc
Q psy13206 275 DECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIG 354 (478)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (478)
........+..+++.++.|+++||+|||+.+..+.++.++..+..... + ..+...+.....+++.+ .
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~l~g~~~~-~ 98 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----G--------AYVSLYILRVLLGAAEA-P 98 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH----c--------CHHHHHHHHHHHHHHHH-h
Confidence 344455667778889999999999999999888877766665544321 0 01111111122222211 2
Q ss_pred ccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCC
Q psy13206 355 LGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKG 430 (478)
Q Consensus 355 ~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~ 430 (478)
..+....+.+|.+|++.|+++.++.+....+|..+++.+.+.+.+..++...+.+.++..++..+..+++.||++.
T Consensus 99 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 99 FFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 2345667889999999999999999999999999999999988888888877777777666666666667777654
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-09 Score=110.11 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=95.0
Q ss_pred hhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccc
Q psy13206 253 MSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVD 332 (478)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 332 (478)
...+.++.+.+..+.+.+..+.........++..++.++.|+++||+|||+++..+.+..++..++.+.. .
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----~----- 122 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV----S----- 122 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh----c-----
Confidence 3344455555444433322222223334455666788999999999999999888777766665443321 1
Q ss_pred ccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH---------hccc
Q psy13206 333 LSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD---------HYGV 403 (478)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~---------~~g~ 403 (478)
++..+. +..+...++.+.......+.+|.+|++.||++.|+.+..+.+|+.+++.+.+.+.. ..|+
T Consensus 123 ----s~~~l~-~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW 197 (476)
T PLN00028 123 ----SATGFI-AVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW 197 (476)
T ss_pred ----CHHHHH-HHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh
Confidence 011111 11111122222112233467899999999999999988888887777666655432 1367
Q ss_pred chHHHHHHHHHHHHHHHhheeecC
Q psy13206 404 YLNFYIYSLGCIICGVLVYFIIPE 427 (478)
Q Consensus 404 ~~~~~~~~~~~~l~~~~~~~~~pE 427 (478)
...|++.++..++.++..+++.++
T Consensus 198 r~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 198 RIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Confidence 777887777776666665554444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=109.18 Aligned_cols=158 Identities=17% Similarity=0.174 Sum_probs=104.3
Q ss_pred HhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccc
Q psy13206 258 PYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFN 337 (478)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 337 (478)
.+.+....+.+.+..+.........++..++.++.|++.||+|||+.+..+.++.++++++.... + ..
T Consensus 44 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~--------~~ 111 (434)
T PRK11663 44 AAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS----S--------SL 111 (434)
T ss_pred HhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH----h--------HH
Confidence 34444444433322222333344556677888999999999999999988888877776654321 1 00
Q ss_pred hHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q psy13206 338 WIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIIC 417 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~ 417 (478)
+.........++..+. ..+....+.+|.+|++.|+++.++.+....+|..+++.+.+.+.+..++...+++.++..++.
T Consensus 112 ~~l~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 112 WAFALLWVLNAFFQGW-GWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHc-cchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 1111111122222222 224456788999999999999999999999999999999999988888887777777665555
Q ss_pred HHHhheeecCC
Q psy13206 418 GVLVYFIIPES 428 (478)
Q Consensus 418 ~~~~~~~~pEt 428 (478)
+++.++++||+
T Consensus 191 ~~~~~~~~~~~ 201 (434)
T PRK11663 191 GLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHcCCC
Confidence 55555566665
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-10 Score=111.75 Aligned_cols=143 Identities=10% Similarity=0.239 Sum_probs=110.0
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
++++++.+.+++.+...++.+++.++.|+++||+|||+.+..+.+...+......++++++.+++.|++.+++.|...+.
T Consensus 246 ~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~ 325 (393)
T PRK15011 246 ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGI 325 (393)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888899888888888999999999999999999888776666655555566788888899999999999988888
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHHhhccccC
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLMTFIWMPE 172 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~pE 172 (478)
...+..|..|+ +||...++.+....+|..+++.++. ..+|+..++......++.++....+||
T Consensus 326 ~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 326 GMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88899999986 5888888887777777777766553 246766666555555555555444443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.9e-10 Score=108.53 Aligned_cols=166 Identities=15% Similarity=0.088 Sum_probs=108.0
Q ss_pred hhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccc
Q psy13206 250 ISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENY 329 (478)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 329 (478)
..+.....+..+....+.+.+............+...++.++.|+++||+|||+.+..+.++.++..+..... +
T Consensus 16 ~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~----~-- 89 (392)
T PRK10473 16 PAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA----E-- 89 (392)
T ss_pred HHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh----C--
Confidence 3444455556665555443332222223334455667788899999999999999988877776665543311 1
Q ss_pred cccccccchHHHHHHHHHHHHHHhcc---cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q psy13206 330 TVDLSKFNWIPLISITCFAVIYSIGL---GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLN 406 (478)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~g~---g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~ 406 (478)
+...+ ....+..+.+. .+..+.+.+|.+|++.|+++.++.+....++..++|.+.+.+.+..++...
T Consensus 90 -------~~~~~---~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~ 159 (392)
T PRK10473 90 -------TSSLF---LAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSL 159 (392)
T ss_pred -------cHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHH
Confidence 01111 11122222222 234567888999999999999999999999988888888877777777777
Q ss_pred HHHHHHHHHHHHHHhheeecCCCCC
Q psy13206 407 FYIYSLGCIICGVLVYFIIPESKGK 431 (478)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~pEt~~~ 431 (478)
+++.+...++..++.+.++||++.+
T Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (392)
T PRK10473 160 FYTMAAMGILVLLLSLFILKETRPA 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 7777766667766666777887543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=105.76 Aligned_cols=134 Identities=17% Similarity=0.179 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhc---cc
Q psy13206 280 LLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIG---LG 356 (478)
Q Consensus 280 ~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~g 356 (478)
...+...++.++.|.++||+|||+++..+.++.++.++..... + ++..+. ...+..+.+ ..
T Consensus 52 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~---------~~~~l~---~~r~~~G~~~~~~~ 115 (390)
T PRK03545 52 IYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA----W---------NFTVLL---ISRIGIAFAHAIFW 115 (390)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh----c---------cHHHHH---HHHHHHHHHHHHHH
Confidence 3444556778889999999999999998887777766554321 1 011111 111222222 12
Q ss_pred ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 357 PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 357 ~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
+....+.+|.+|++.|+++.|+......++..++|.+.+.+.+..++...|++.++..++..+..+...||.+
T Consensus 116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3445678899999999999999999999999999999988888888888888877766666665555667653
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-09 Score=105.22 Aligned_cols=137 Identities=12% Similarity=0.136 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccc
Q psy13206 280 LLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLV 359 (478)
Q Consensus 280 ~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 359 (478)
...+...++.++.|.++||+|||+++..+.++.++..+..... + ..+..++.-...++..+. ..+..
T Consensus 63 ~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----~--------~~~~l~~~r~l~G~~~g~-~~~~~ 129 (394)
T PRK10213 63 VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA----N--------SFSLLLIGRACLGLALGG-FWAMS 129 (394)
T ss_pred HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH----C--------hHHHHHHHHHHHHHhhHH-HHHHH
Confidence 4556667788899999999999999999888887766553321 1 011111111222222221 23556
Q ss_pred hhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 360 PTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 360 ~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
..+.+|.+|++.|+++.++......++..++|.+.+.+.+.+++...|++.++..++..+......||++
T Consensus 130 ~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 130 ASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 6788999999999999999999999999999999999988888877777766555554444444567754
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=106.58 Aligned_cols=164 Identities=10% Similarity=0.114 Sum_probs=103.0
Q ss_pred hhhhhHHHHhHHHHHHhcCCCCCCchhhHH---HHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhc
Q psy13206 250 ISGMSAVLPYASSTFARTEGSLITPDECTL---LLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLS 326 (478)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~ 326 (478)
..+.....++.+..+.+..+ .+..+.+. ...+...++.++.|+++||+|||+++..+.+..++..+.....
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g--~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~---- 93 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYS--LSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV---- 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH----
Confidence 34555666777766654322 23333333 3445666788899999999999999888777666654433211
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q psy13206 327 ENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLN 406 (478)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~ 406 (478)
+ ..+..+..........+ ...+....+.+|.+|++.|+++.++.+...++|..++|.+.+.+.. .++...
T Consensus 94 ~--------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~ 163 (395)
T PRK10054 94 N--------NVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLP 163 (395)
T ss_pred h--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcH
Confidence 1 01111111111111111 2234456778899999999999999999999999999999888764 577777
Q ss_pred HHHHHHHHHHHHHHhheeecCCC
Q psy13206 407 FYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
|++.++..++..+...+++||++
T Consensus 164 f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 164 FWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 77666555555444545556553
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-09 Score=107.02 Aligned_cols=138 Identities=20% Similarity=0.177 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 276 ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 276 ~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
.......++..++.++.|+++||+|||+++..+.++.+++.+..... . ++..+. ...+..+.+.
T Consensus 54 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~---------~~~~~~---~~~~l~G~~~ 117 (406)
T PRK11551 54 WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA----W---------DFPSLL---VARLLTGVGL 117 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----c---------cHHHHH---HHHHHHHhhH
Confidence 33444556677889999999999999999988877666654433211 1 111111 1122222222
Q ss_pred ---cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 356 ---GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 356 ---g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
.+....+.+|.+|++.|+++.++.+....+|+.+++.+...+.+..++...+++.++..++..++...++||+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 118 GGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 23456688999999999999999999999999999888777777677766676666555555555556678864
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-10 Score=112.28 Aligned_cols=132 Identities=11% Similarity=0.138 Sum_probs=106.0
Q ss_pred ccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhh
Q psy13206 31 EMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAP 110 (478)
Q Consensus 31 ~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~ 110 (478)
+.+..+.+++.++..++.++++++.|++.||+|||+.+..+.++..++.++.++++|.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999989999999999999999999999999888888
Q ss_pred hhhhhccccccchhhhHH-HHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHH
Q psy13206 111 MYIGEISGAKCRGALSTF-FIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVV 162 (478)
Q Consensus 111 ~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~ 162 (478)
.++.|..|++.|+...+. .+....+|..+++.++ ...+|+..+.......++
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i 394 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLL 394 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 999999999999876443 3444455555544433 234677777665554443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-08 Score=98.89 Aligned_cols=129 Identities=19% Similarity=0.179 Sum_probs=100.9
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhccc-CchhHHHhhhHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV-GRKPCLLTTGPLYIISWLLVIFTK--HVYVLYVVRFMQGLAMGIVF 106 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~-GRr~~l~~~~~l~~i~~~~~~~a~--~~~~l~~~R~l~G~~~g~~~ 106 (478)
+++|.+++.-+.+.|.----+..++.|+++||+ |+|++++.+.+++.+|-+..+.++ +...++++-.+.++|.|..=
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 678888877777777666667888999999998 999999999999999999999884 78999999999999999999
Q ss_pred hhhhhhhhhcccccc--chhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHH
Q psy13206 107 TVAPMYIGEISGAKC--RGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLV 158 (478)
Q Consensus 107 ~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~ 158 (478)
+....++.|..|++. |-...+......++|.++++.+.+ ..+|+..+-...+
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aav 193 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAV 193 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999987532 223333444556677666666543 4567766654433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=6e-09 Score=103.17 Aligned_cols=138 Identities=20% Similarity=0.212 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhc
Q psy13206 275 DECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIG 354 (478)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (478)
........+...++.++.|+++||+|||+.+..+.++.+++.+..... + ++.. +....+..+.+
T Consensus 50 g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~----~---------~~~~---l~~~~~l~G~~ 113 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA----P---------GYIT---MFIARLVIGIG 113 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh----c---------cHHH---HHHHHHHHHhh
Confidence 334444566777889999999999999999988877777665554311 1 1111 11122223332
Q ss_pred c---cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 355 L---GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG--VYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 355 ~---g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g--~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
. .+....+..|.+|++.|+++.++.+....+|..+++.+.+.+.+..+ +...+++.+ ...+..++.....||++
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~-~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 114 MGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISI-LPIIFALWLRKNIPEAE 192 (405)
T ss_pred hhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH-HHHHHHHHHHHhCCCCh
Confidence 2 23455678899999999999999999999999999988888877665 555554433 33333444445667764
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.8e-10 Score=111.54 Aligned_cols=141 Identities=14% Similarity=0.219 Sum_probs=110.9
Q ss_pred CcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhhhhhhhh
Q psy13206 33 TSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK----HVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 33 ~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~----~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+..+.+.+.++..++.+++.++.|++.||+|||+++.++.++..++..+...+. +++.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346678999999999999999999999999999999999999988876666632 3567888999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHH-HHHHHhHHHHhhcCCc----------cchhhHHHHHHHHHHH-HHHhhccccCC
Q psy13206 109 APMYIGEISGAKCRGALSTFFI-GMLNTGILLEYTVGPY----------VDYDTLAYVSLVIPVV-FLMTFIWMPES 173 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~-~~~~~G~~l~~~~g~~----------~~~~~~~~~~~~~~~~-~~~~~~~~pES 173 (478)
...++.|++|+++||+..++.+ ....+|..+++.++.. .+|+..+.......++ ..+...+++|+
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999986 5567777766665421 3577766655444433 33444456776
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.8e-09 Score=103.09 Aligned_cols=163 Identities=22% Similarity=0.253 Sum_probs=104.1
Q ss_pred hhhHHHHhHHHHHHhcCCCCCCc-----hhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhc
Q psy13206 252 GMSAVLPYASSTFARTEGSLITP-----DECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLS 326 (478)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~ 326 (478)
+.....++.+.+..+.+.+..+. .....+..+...+++++.|+++||+|||+.+..+.+..++..+.....
T Consensus 29 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---- 104 (408)
T PRK09874 29 AFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA---- 104 (408)
T ss_pred HHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH----
Confidence 33445566666655543332221 122233445667788899999999999999888777666655443211
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q psy13206 327 ENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLN 406 (478)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~ 406 (478)
+ ..+..++.....++ +.+..+....+..|.+|++.|+++.++.+....++..+++.+.+.+.+..++...
T Consensus 105 ~--------~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 174 (408)
T PRK09874 105 Q--------NIWQFLILRALLGL--LGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPV 174 (408)
T ss_pred h--------hHHHHHHHHHHHHH--hhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 1 01111111111121 1223344455677889999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHhheeecCC
Q psy13206 407 FYIYSLGCIICGVLVYFIIPES 428 (478)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~pEt 428 (478)
+++.++..++..+..+++.||+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 175 FFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 7777766666666665666665
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.8e-10 Score=111.79 Aligned_cols=159 Identities=25% Similarity=0.251 Sum_probs=109.0
Q ss_pred HHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccc
Q psy13206 256 VLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSK 335 (478)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 335 (478)
..+..+.+..+.+.+............++..++.++.|+++||+|||+.++.+.++.+++.+.... .+
T Consensus 21 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~-------- 88 (485)
T TIGR00711 21 VNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV----AP-------- 88 (485)
T ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC----cC--------
Confidence 334445544444433333444555667778889999999999999999998888777776554331 11
Q ss_pred cchHHHHHHHHHHHHHHhcc---cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy13206 336 FNWIPLISITCFAVIYSIGL---GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSL 412 (478)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~g~---g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~ 412 (478)
++..+ ....+..+.+. .+....+.+|.+|++.|+++.++......++..+++.+.+.+.++.++...|++.+.
T Consensus 89 -~~~~l---~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~ 164 (485)
T TIGR00711 89 -NLELM---IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVP 164 (485)
T ss_pred -CHHHH---HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhH
Confidence 11111 12222233332 345667889999999999999999999999999999999999888888877777666
Q ss_pred HHHHHHHHhheeecCCCC
Q psy13206 413 GCIICGVLVYFIIPESKG 430 (478)
Q Consensus 413 ~~~l~~~~~~~~~pEt~~ 430 (478)
..++..++.+++.||+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 165 IGIIVVVVAFFILPRDKP 182 (485)
T ss_pred HHHHHHHHHHHHcCCccc
Confidence 666665666666777543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-09 Score=105.37 Aligned_cols=139 Identities=15% Similarity=0.011 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccccc
Q psy13206 279 LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPL 358 (478)
Q Consensus 279 ~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~ 358 (478)
.+..++..++.++.|.++||+|||++++.+.++.+++.+.... .++ .+..++.-...++..+ ...+.
T Consensus 58 s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~----a~~--------~~~l~~~r~l~Gi~~~-~~~~~ 124 (413)
T PRK15403 58 SLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF----TTS--------MTQFLIARFIQGTSIC-FIATV 124 (413)
T ss_pred HHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH----cCC--------HHHHHHHHHHHHHHHH-HHHHH
Confidence 3445666778899999999999999998887777766554331 110 1111111112222111 11234
Q ss_pred chhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCC
Q psy13206 359 VPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKG 430 (478)
Q Consensus 359 ~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~ 430 (478)
.+.+.+|.+|++.|+++.++.+....++..++|.+.+.+.+..++...|++.++..++..+..++.+||+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 125 GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 456788999999999999999999999999999888888888888888877776666665555566888754
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.08 E-value=9e-10 Score=106.57 Aligned_cols=137 Identities=20% Similarity=0.329 Sum_probs=119.7
Q ss_pred ccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchh-HHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhh
Q psy13206 31 EMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKP-CLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVA 109 (478)
Q Consensus 31 ~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~-~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~ 109 (478)
+.++.+.+++.+...++..++.++.|++.||+|||+ .+..+.++..++.+...+.++.+.+.+..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 668888999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHHhh
Q psy13206 110 PMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLMTF 167 (478)
Q Consensus 110 ~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~~ 167 (478)
..++.|..|+++|++..+..+.....|..+++.+.. ..+|+..+.+...+.++..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888888877766643 3467766666665555544443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-09 Score=104.60 Aligned_cols=137 Identities=14% Similarity=0.052 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc-
Q psy13206 278 TLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG- 356 (478)
Q Consensus 278 ~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g- 356 (478)
.....++..++.++.|+++||+|||+++............. ....+ ++ ..+....+..+.+.+
T Consensus 32 ~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~----~~~~~---------~~---~~l~~~R~l~G~g~~~ 95 (368)
T TIGR00903 32 AITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGR----LLDPF---------NY---EWLLACQLLAALGQPF 95 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH----HHHhc---------cH---HHHHHHHHHHHhHhHH
Confidence 33455667788999999999999998765443332222111 00000 11 122223333343333
Q ss_pred -ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCC
Q psy13206 357 -PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKG 430 (478)
Q Consensus 357 -~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~ 430 (478)
+......+|.+|++.|+++.++.+....+|..+++.+.+.+.+.+||...|++.++..++..++.++++||++.
T Consensus 96 ~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 96 LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPF 170 (368)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 22344558999999999999999999999999999999999888899888887777777777777778898653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.3e-09 Score=102.97 Aligned_cols=159 Identities=10% Similarity=0.061 Sum_probs=105.9
Q ss_pred HHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccccc
Q psy13206 255 AVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLS 334 (478)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (478)
...+..+...++.+.+............++..+++++.|++.||+|||+++..+.++.++..+..+.. +
T Consensus 21 ~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~----~------- 89 (382)
T PRK10091 21 GIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS----S------- 89 (382)
T ss_pred HHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh----C-------
Confidence 33444554444333332223344455677778899999999999999999998888877766554321 1
Q ss_pred ccchHHHHHHHHHHHHHHhcc---cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy13206 335 KFNWIPLISITCFAVIYSIGL---GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYS 411 (478)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~g~---g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~ 411 (478)
..+. +....++.+.+. .+....+.+|++|++.|+++.++......++..+++.+.+.+.+..++...+++.+
T Consensus 90 -~~~~----l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~ 164 (382)
T PRK10091 90 -SYLM----LAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA 164 (382)
T ss_pred -cHHH----HHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence 0111 111222233222 23445677899999999999999988888999999888888888888888887777
Q ss_pred HHHHHHHHHhheeecCCC
Q psy13206 412 LGCIICGVLVYFIIPESK 429 (478)
Q Consensus 412 ~~~~l~~~~~~~~~pEt~ 429 (478)
+...+..+..++++||.+
T Consensus 165 ~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 165 VFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 666666555566778864
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-09 Score=103.18 Aligned_cols=115 Identities=24% Similarity=0.309 Sum_probs=94.3
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCc-hhHHHhhhHHHHHHHHHH-HHh---h-hHHHHHHHHHHHhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGR-KPCLLTTGPLYIISWLLV-IFT---K-HVYVLYVVRFMQGLAM 102 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GR-r~~l~~~~~l~~i~~~~~-~~a---~-~~~~l~~~R~l~G~~~ 102 (478)
|.+-+++..||+.++..+|.+++++.+|+...|.|. |+.++.+.++..++.++- +++ + .-+.++++|++.|+|.
T Consensus 65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~ 144 (488)
T KOG2325|consen 65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV 144 (488)
T ss_pred CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence 344456667999999999999999999999999996 777999999999999888 333 2 5689999999999996
Q ss_pred hhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC
Q psy13206 103 GIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG 144 (478)
Q Consensus 103 g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g 144 (478)
|. ..+.-.|++.-+-.+.|-++.+....+..+|..+|+.++
T Consensus 145 ~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q 185 (488)
T KOG2325|consen 145 GN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQ 185 (488)
T ss_pred cc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHH
Confidence 55 467799999988888888888877777777766666554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.4e-09 Score=105.01 Aligned_cols=142 Identities=13% Similarity=0.126 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc-
Q psy13206 277 CTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL- 355 (478)
Q Consensus 277 ~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 355 (478)
......++.++++++.|+++||+|||+++..+.++..++.++.+.. .+.. .......+....+..+++.
T Consensus 61 ~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~----~~~~------~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 61 VNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS----PGSS------PKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc----cCcc------cchHHHHHHHHHHHHHHHHh
Confidence 3444566777899999999999999999988877777765543321 1000 0000111222233333333
Q ss_pred --cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH-----------------------hcccchHHHHH
Q psy13206 356 --GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD-----------------------HYGVYLNFYIY 410 (478)
Q Consensus 356 --g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~-----------------------~~g~~~~~~~~ 410 (478)
.+..+.+.+|.+|++.||++.++.+....+|..+++.+...+.. ..+|...+.+.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~ 210 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG 210 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence 35677899999999999999999999988888887777654432 12455555444
Q ss_pred HHHHHHHHHHhheeecCCC
Q psy13206 411 SLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 411 ~~~~~l~~~~~~~~~pEt~ 429 (478)
+++.++ .++..+++||+.
T Consensus 211 ~ip~~i-~~~~~~~lpESp 228 (502)
T TIGR00887 211 AVPALL-ALYFRLTIPETP 228 (502)
T ss_pred HHHHHH-HHHHHHhCCCCH
Confidence 444443 333446789984
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=105.08 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=107.4
Q ss_pred HHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccccc
Q psy13206 255 AVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLS 334 (478)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (478)
.+.|..+.+..+.+.+..+.........++..++.++.|+++||+|||+.+..+.++.+++.+..... ++
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~----~~------ 78 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA----QT------ 78 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH----cc------
Confidence 34455565554433332222333444566677888999999999999999988887777766554321 10
Q ss_pred ccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy13206 335 KFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGC 414 (478)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~ 414 (478)
.+.........+++.+ ...+....+.+|.+|++.|+++.++.+....++..+++.+.+.+.+..++...+++.+...
T Consensus 79 --~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (377)
T PRK11102 79 --IDQLIYMRFLHGLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAA 155 (377)
T ss_pred --HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 1111111111121111 1234456788999999999999999999999999999999998888888777777777666
Q ss_pred HHHHHHhheeecCCC
Q psy13206 415 IICGVLVYFIIPESK 429 (478)
Q Consensus 415 ~l~~~~~~~~~pEt~ 429 (478)
++..+...++.||++
T Consensus 156 ~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 156 ILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHhCCccC
Confidence 666666666777764
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-08 Score=101.45 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=102.2
Q ss_pred HHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccccc
Q psy13206 255 AVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLS 334 (478)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (478)
...+..+.+..+.+.+............+...++.++.|.++||+|||+.+..+.+..++..+.... .+
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~----~~------- 94 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF----AH------- 94 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH----Hc-------
Confidence 3344445444433333222233334455666788899999999999999988887766665544321 11
Q ss_pred ccchHHHHHHHHHHHHHHhcc---cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy13206 335 KFNWIPLISITCFAVIYSIGL---GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYS 411 (478)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~g~---g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~ 411 (478)
++.. +....++.+.+. .+....+..|.++.+.|+.+.++.+....++..++|.+.+.+.+..++...+++.+
T Consensus 95 --~~~~---l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 95 --SLTV---LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred --cHHH---HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 0111 111122222222 23445577889999999999999888888888899988888888888877777766
Q ss_pred HHHHHHHHHhheeecCCCCC
Q psy13206 412 LGCIICGVLVYFIIPESKGK 431 (478)
Q Consensus 412 ~~~~l~~~~~~~~~pEt~~~ 431 (478)
+..++..+...++.||++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~ 189 (394)
T PRK11652 170 LLGAGVTFSMARWMPETRPA 189 (394)
T ss_pred HHHHHHHHHHHHhCCccCcc
Confidence 65555555555667886543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.7e-09 Score=102.71 Aligned_cols=136 Identities=14% Similarity=0.080 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhc---c
Q psy13206 279 LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIG---L 355 (478)
Q Consensus 279 ~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~ 355 (478)
....++..++.++.|.++||+|||+.+..+.+..+++.+..... + ++..+. . ..+..+.+ .
T Consensus 55 ~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----~---------~~~~l~-~--~~~l~G~~~~~~ 118 (406)
T PRK15402 55 TAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA----Q---------SIEQFT-L--LRFLQGIGLCFI 118 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----c---------cHHHHH-H--HHHHHHhHhhhH
Confidence 34556667888899999999999999988877777665543211 1 011111 1 12222222 1
Q ss_pred cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCC
Q psy13206 356 GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKG 430 (478)
Q Consensus 356 g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~ 430 (478)
.+..+.+.+|.+|++.|+++.++......++..++|.+.+.+.+..++...+++.++..++..+..++..||+++
T Consensus 119 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 119 GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 244566778999999999999998888888888888888888888888777877777666666656666788754
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.2e-09 Score=100.58 Aligned_cols=136 Identities=12% Similarity=0.149 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccc
Q psy13206 278 TLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGP 357 (478)
Q Consensus 278 ~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 357 (478)
.....+..+++.++.|+++||+|||+.+..+.++.+++.+.......... ...+..++.....++..+ ...+
T Consensus 40 ~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~-~~~~ 111 (365)
T TIGR00900 40 ALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG-------LNIWQVYVLAGILAIAQA-FFTP 111 (365)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHH-HHHH
Confidence 34445666788899999999999999998887776666554433221100 011111112122222222 1234
Q ss_pred cchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Q psy13206 358 LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLV 421 (478)
Q Consensus 358 ~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~ 421 (478)
....+.+|++|++.|++..++.+....+|..+++.+.+.+.+..++...+++.++..++..+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999999999999999999998888888777766665554444443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=105.86 Aligned_cols=142 Identities=17% Similarity=0.137 Sum_probs=96.9
Q ss_pred hhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhc
Q psy13206 275 DECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIG 354 (478)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (478)
........+..+++.++.|+++||+|||+.+..+.++.+++.++..... ..+. +. +..+....+.+
T Consensus 33 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------------~~~~-~~-~~~~~~g~~~~ 98 (379)
T TIGR00881 33 GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST------------SLWV-MA-ALWALNGIFQG 98 (379)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh------------hHHH-HH-HHHHHHHhhcc
Confidence 3344455677778899999999999999999988877777665543211 0111 11 11111112222
Q ss_pred -ccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHH-HHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCC
Q psy13206 355 -LGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMK-MYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKG 430 (478)
Q Consensus 355 -~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~-~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~ 430 (478)
..+....+.+|.+|++.|+++.++.+....+|..+++. +...+.+..++...+++.++..++.+++.+++.||++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 99 MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ 176 (379)
T ss_pred ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcc
Confidence 23556678899999999999999999999999999884 55555566677777777676666666777777777643
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.8e-09 Score=102.61 Aligned_cols=119 Identities=17% Similarity=0.189 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 276 ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 276 ~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
.......++..++.++.|+++||+|||+.+..+.+..+++.+...... ++. .+....+..+.+.
T Consensus 57 ~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-------------~~~---~l~~~r~l~G~g~ 120 (426)
T PRK12307 57 FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS-------------GVI---MLTLSRFIVGMGM 120 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh-------------HHH---HHHHHHHHHHHHH
Confidence 344455667778899999999999999999988888777765543211 011 1222223333332
Q ss_pred ---cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q psy13206 356 ---GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIY 410 (478)
Q Consensus 356 ---g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~ 410 (478)
.+....+..|.+|++.|+++.++......+|..+++.+.+.+.+..++...+++.
T Consensus 121 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~ 178 (426)
T PRK12307 121 AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG 178 (426)
T ss_pred hhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence 2345567889999999999999999999999999988888887777777666553
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=106.18 Aligned_cols=131 Identities=12% Similarity=0.214 Sum_probs=106.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy13206 36 ESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGE 115 (478)
Q Consensus 36 ~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E 115 (478)
+.++..+.+.++.+++.++.|++.||+|||+.+..+..+..++.++..+.+|.+.+++.+++.|++.+..++.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35667788889999999999999999999999999988888888888888899899999999999999999988888899
Q ss_pred ccccccchhhhHHHHHHHHHhHHHHhhc-C---CccchhhHHHHHHHHHHHHHHh
Q psy13206 116 ISGAKCRGALSTFFIGMLNTGILLEYTV-G---PYVDYDTLAYVSLVIPVVFLMT 166 (478)
Q Consensus 116 ~~p~~~Rg~~~~~~~~~~~~G~~l~~~~-g---~~~~~~~~~~~~~~~~~~~~~~ 166 (478)
..|+++||+..+.......+|..+++.+ | ...+|+..+++.....++..+.
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 384 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLAL 384 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888777776554433 2 2346776666555444444333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-09 Score=105.51 Aligned_cols=139 Identities=17% Similarity=0.086 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 276 ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 276 ~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
.......++...+.++.|+++||+|||+.+..+.++.+++.+..+.. + ++.. +....++.+.+.
T Consensus 45 ~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a----~---------~~~~---li~~r~l~G~g~ 108 (495)
T PRK14995 45 WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS----P---------TASW---LIATRALLAIGA 108 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc----C---------CHHH---HHHHHHHHHHHH
Confidence 33344455666777889999999999999999888877776654321 1 1111 112222233332
Q ss_pred c---ccchhhhccc-CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCC
Q psy13206 356 G---PLVPTLQGEF-FPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKG 430 (478)
Q Consensus 356 g---~~~~~~~~El-~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~ 430 (478)
+ |.......+. .|++.|+++.|+......+|..++|.+.+.+.++.+|.+.|++.....++..++.++++||.++
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 109 AMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 2 2222334444 4789999999999999999999999999999999998888877766666666666667777543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-08 Score=101.27 Aligned_cols=153 Identities=16% Similarity=0.228 Sum_probs=96.6
Q ss_pred HHHhHHHHHHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhc-CCchhHHHhhHHHHHHHHHHHHHHhhcccccccc
Q psy13206 256 VLPYASSTFART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRT-GRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDL 333 (478)
Q Consensus 256 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 333 (478)
...+.+.++.+. +.+..+.............++++++|+++||+ |||+.++.+.++.++..+++... ..
T Consensus 28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~---~~------ 98 (493)
T PRK15462 28 MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS---EI------ 98 (493)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh---hc------
Confidence 334455444433 22222222233334455567888999999999 99999988888777765543210 00
Q ss_pred cccchHHHHHHHHHHHHHHhcc-cccchhhhcccCCcc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q psy13206 334 SKFNWIPLISITCFAVIYSIGL-GPLVPTLQGEFFPSN--TRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIY 410 (478)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~El~p~~--~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~ 410 (478)
........+. ....+.|. .++..++.+|++|++ .|+++.++.+..+++|++++|.+.+++.+..|+...|.+.
T Consensus 99 --~~~~~~l~l~--li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~ia 174 (493)
T PRK15462 99 --HPSFLYLSLA--IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLA 174 (493)
T ss_pred --chhHHHHHHH--HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHH
Confidence 0011111111 12222232 355667899999986 7999999999999999999999999999888887777765
Q ss_pred HHHHHHHHHHhh
Q psy13206 411 SLGCIICGVLVY 422 (478)
Q Consensus 411 ~~~~~l~~~~~~ 422 (478)
++. ++.+++.+
T Consensus 175 aig-m~l~li~~ 185 (493)
T PRK15462 175 AVG-MIAGLVIF 185 (493)
T ss_pred HHH-HHHHHHHH
Confidence 543 34444433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-09 Score=102.91 Aligned_cols=142 Identities=20% Similarity=0.281 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhc
Q psy13206 275 DECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIG 354 (478)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (478)
........+...++.++.|.++||+|||+++..+.++.+++.+... +. + ..+...+.....+++. ..
T Consensus 35 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~---~--------~~~~~~~~~~l~g~~~-~~ 101 (352)
T PF07690_consen 35 GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-FA---S--------NFWLLLIARFLLGIGS-GF 101 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-HH---C--------CHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-hh---h--------hHHHHhhhcccccccc-cc
Confidence 3344445667778899999999999999999888888887733332 11 1 1121111111112111 12
Q ss_pred ccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 355 LGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 355 ~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
..+....+.+|.+|++.|+++.++.+....+|..+++.+.+.+.+..++...+++.++..++..++...+.++++
T Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~ 176 (352)
T PF07690_consen 102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPP 176 (352)
T ss_dssp HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---S
T ss_pred ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcc
Confidence 345566788999999999999999999999999999999998887778777888888777777665445555443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-09 Score=103.61 Aligned_cols=140 Identities=13% Similarity=0.309 Sum_probs=108.2
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVA 109 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~ 109 (478)
.+.++.+.+++.+.......++.++.|++.||+|||+.+.++.++..+...+..+.++.+.+.+.+++.|++.|...+..
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 309 (375)
T TIGR00899 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG 309 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888777788899999999999999999988877766666666677888889999999999999999999
Q ss_pred hhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHHhhccc
Q psy13206 110 PMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLMTFIWM 170 (478)
Q Consensus 110 ~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (478)
..++.|..|++ |+...+..+....+|..+++.++. ..+|+..++......++..+...++
T Consensus 310 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 310 MLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence 99999998865 568888888777777777665543 2467766666555555544444443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=103.22 Aligned_cols=160 Identities=16% Similarity=0.081 Sum_probs=102.3
Q ss_pred hhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccc
Q psy13206 253 MSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVD 332 (478)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 332 (478)
...+.++.+.+..+.+.+............+...++.++.|+++||+|||+++..+.++.+++.+.... .+
T Consensus 26 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----~~----- 96 (471)
T PRK10504 26 TTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL----SG----- 96 (471)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH----hC-----
Confidence 334455666655543333222222333344556678889999999999999988776666655543221 11
Q ss_pred ccccchHHHHHHHHHHHHHHhcc---cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy13206 333 LSKFNWIPLISITCFAVIYSIGL---GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYI 409 (478)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~---g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~ 409 (478)
+...+ ....++.+.+. .|....+..|.+|++.|+++.++.+....++..++|.+.+.+.+..++...|++
T Consensus 97 ----~~~~l---~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~ 169 (471)
T PRK10504 97 ----TLNEL---LLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI 169 (471)
T ss_pred ----CHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence 01111 11122233322 345566788999999999999999999999999999999999888887777776
Q ss_pred HHHHHHHHHHHhheeecCC
Q psy13206 410 YSLGCIICGVLVYFIIPES 428 (478)
Q Consensus 410 ~~~~~~l~~~~~~~~~pEt 428 (478)
......+..+......|+.
T Consensus 170 ~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 170 NIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 6555555555555555554
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.1e-09 Score=85.83 Aligned_cols=135 Identities=19% Similarity=0.234 Sum_probs=93.4
Q ss_pred HHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccch
Q psy13206 281 LGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVP 360 (478)
Q Consensus 281 ~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 360 (478)
..++.+++.++.+++.||+|||+.+..+.....+..+..... + ..+.........+...+ ...+..+
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~~~g~~~~-~~~~~~~ 73 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS----S--------NITVLIIARFLQGFGAA-FALVAGA 73 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh----c--------cHHHHHHHHHHHHHHHH-HHHHhHH
Confidence 356677888899999999999999887776666655443211 1 01111111122222221 1234566
Q ss_pred hhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCC
Q psy13206 361 TLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPES 428 (478)
Q Consensus 361 ~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt 428 (478)
.+..|.+|++.|+++.++.+....++..+++.+.+.+.+..++...+++.+....+..+..+++.|||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 78899999999999999999999999999999999988877765667666666666666666667764
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=98.39 Aligned_cols=166 Identities=17% Similarity=0.070 Sum_probs=96.9
Q ss_pred hhhhHHHHhHHHHHHh-cCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccc
Q psy13206 251 SGMSAVLPYASSTFAR-TEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENY 329 (478)
Q Consensus 251 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~ 329 (478)
.......++.+..+.+ .+.+............++..++.++.|+++||+|||+.+..+.++.++..+...... .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~---~-- 89 (366)
T TIGR00886 15 SVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV---Q-- 89 (366)
T ss_pred HHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh---h--
Confidence 3444555666643333 222222233344445667778899999999999999999888887777665543210 0
Q ss_pred cccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh---------
Q psy13206 330 TVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH--------- 400 (478)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~--------- 400 (478)
++..+.. ..+....+.+..+....+.+|.+|++.|+++.++......+|..+++.+.+.+...
T Consensus 90 -------~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 161 (366)
T TIGR00886 90 -------SYSVLLL-LRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161 (366)
T ss_pred -------hHHHHHH-HHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 0111111 11111112222233456788999999999999998877777777777776665542
Q ss_pred -cccchHH-HHHHHHHHHHHHHhheeecCCC
Q psy13206 401 -YGVYLNF-YIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 401 -~g~~~~~-~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
.++...+ +..++...+..++.+.+.+|+.
T Consensus 162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (366)
T TIGR00886 162 HLAWGWAFVIVPAGILLLPALLIFFVGADTP 192 (366)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence 2455555 3334444444444455556543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-08 Score=101.03 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc
Q psy13206 277 CTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG 356 (478)
Q Consensus 277 ~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g 356 (478)
......++.+++.++.|+++||+|||++++.+.++.+++.+..+......... ....+.....+....++.+++.+
T Consensus 60 ~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~R~l~G~~~g 135 (479)
T PRK10077 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSI----GPDNTGYVPEFVIYRIIGGIGVG 135 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccc----cccchhHHHHHHHHHHHHhhhHh
Confidence 34445667778999999999999999999988887766655433211000000 00011111223334444444444
Q ss_pred ---ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH--------HhcccchHHHHHHHHHHHHHHHhheee
Q psy13206 357 ---PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVIC--------DHYGVYLNFYIYSLGCIICGVLVYFII 425 (478)
Q Consensus 357 ---~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~--------~~~g~~~~~~~~~~~~~l~~~~~~~~~ 425 (478)
+....+.+|.+|++.||++.++......+|..+.+.+...+. +..+++..|++.++..++.. +..+++
T Consensus 136 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l 214 (479)
T PRK10077 136 LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFV 214 (479)
T ss_pred HHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcC
Confidence 456678899999999999999998888888877665543332 34567777776655555543 445678
Q ss_pred cCCC
Q psy13206 426 PESK 429 (478)
Q Consensus 426 pEt~ 429 (478)
||+.
T Consensus 215 ~~s~ 218 (479)
T PRK10077 215 PETP 218 (479)
T ss_pred CCCc
Confidence 9875
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=105.17 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=105.9
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhH--HHHHHHHHHHhhhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHV--YVLYVVRFMQGLAMGIVFT 107 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~--~~l~~~R~l~G~~~g~~~~ 107 (478)
++.++.+.+++.+.+.++..+++++.|++.||+|||+.+.++.++..++.++..+.++. ..+++..++.|++.|...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 314 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS 314 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence 45677788999999999999999999999999999999999999998888887777643 3455678999999999988
Q ss_pred hhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHH
Q psy13206 108 VAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSL 157 (478)
Q Consensus 108 ~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~ 157 (478)
..+.++.|..|+++||+..++.+....+|..+++.+.. ..+|+..+.+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~ 368 (377)
T TIGR00890 315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTG 368 (377)
T ss_pred ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Confidence 88999999999999999999998888888777766543 345666555443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-08 Score=98.31 Aligned_cols=159 Identities=16% Similarity=0.099 Sum_probs=98.4
Q ss_pred hhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccc
Q psy13206 253 MSAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVD 332 (478)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 332 (478)
...+.|..+....+.+.+.........+..++..+++++.|+++||+|||+.+..+.++.++..+.... .+
T Consensus 22 ~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~----- 92 (401)
T PRK11043 22 TDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW----VE----- 92 (401)
T ss_pred HHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH----hc-----
Confidence 344445444443333322222233334445666788999999999999999988877766665544321 11
Q ss_pred ccccchHHHHHHHHHHHHHHhcc---cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy13206 333 LSKFNWIPLISITCFAVIYSIGL---GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYI 409 (478)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~---g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~ 409 (478)
++..+. ...+..+.+. .+....+.+|.+|++.|+...+..+....++..++|.+.+.+.+..++...+++
T Consensus 93 ----~~~~l~---~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~ 165 (401)
T PRK11043 93 ----SAAQLL---VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT 165 (401)
T ss_pred ----CHHHHH---HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 011111 1122222222 223345778999999999998888888888999999999998888888777777
Q ss_pred HHHHHHHHHHHhheeecC
Q psy13206 410 YSLGCIICGVLVYFIIPE 427 (478)
Q Consensus 410 ~~~~~~l~~~~~~~~~pE 427 (478)
.++..++..+..+.+.|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 166 LFAITLLLILPTLRLKPS 183 (401)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 666655555544443333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=99.37 Aligned_cols=162 Identities=13% Similarity=0.131 Sum_probs=103.4
Q ss_pred hhhhHHHHhHHHHHHhcCCCCCCchhhHHHHH---HHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcc
Q psy13206 251 SGMSAVLPYASSTFARTEGSLITPDECTLLLG---ILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSE 327 (478)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~ 327 (478)
.+.+...++.+..+.+..+ .++...+.+.+ +...+..++.|+++||+|||+++..+.++.++..+..... +
T Consensus 24 ~~~~~~~~~~~~~~~~~~g--~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~----~ 97 (400)
T PRK11646 24 LGFFVVFPLISIRFVDQLG--WAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA----H 97 (400)
T ss_pred HHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh----c
Confidence 3445556666655544322 23444444444 3444557888999999999999998888877766554311 1
Q ss_pred cccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy13206 328 NYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNF 407 (478)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~ 407 (478)
..+...+.....++..+ ...|...++..|.+|++.|+++.|+.+....++..++|.+.+.+. ..++...+
T Consensus 98 --------~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f 167 (400)
T PRK11646 98 --------EPWLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVC 167 (400)
T ss_pred --------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHH
Confidence 11111111111121111 123445567889999999999999999999999999999999887 56776777
Q ss_pred HHHHHHHHHHHHHhheeecCC
Q psy13206 408 YIYSLGCIICGVLVYFIIPES 428 (478)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~pEt 428 (478)
++.+...++.+++...+.||.
T Consensus 168 ~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 168 ATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCcc
Confidence 766665555555544556764
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.9e-09 Score=98.69 Aligned_cols=137 Identities=17% Similarity=0.190 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHH-HHHHHHhcccc
Q psy13206 279 LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITC-FAVIYSIGLGP 357 (478)
Q Consensus 279 ~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~g~ 357 (478)
....+..-++-++.|.++||.+.|..+..++++++++.++++.... ......+.. -+.+-+.|. |
T Consensus 71 s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s-------------~~~~~~l~~lng~fQg~Gw-p 136 (448)
T COG2271 71 SAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPS-------------LFLFAVLWVLNGWFQGMGW-P 136 (448)
T ss_pred HHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhH-------------HHHHHHHHHHHHHHhcCCC-c
Confidence 3344555578889999999999999999999999999988774321 111112222 222333333 4
Q ss_pred cchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHH--HHHHHhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 358 LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMY--QVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 358 ~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~--~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
.+.-...-.+|++.||+..++=|...++|+.+.+.+. +.+..+.++...|++-++.+++.+++.++..++|.
T Consensus 137 p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 137 PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4555667789999999999999999999999999999 88888888889999999999999998888776654
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-08 Score=99.32 Aligned_cols=138 Identities=13% Similarity=0.194 Sum_probs=87.2
Q ss_pred HHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc---ccc
Q psy13206 283 ILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG---PLV 359 (478)
Q Consensus 283 ~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g---~~~ 359 (478)
++..+++++.|+++||+|||+.+..+.+..++..+..+.. +++. .........+....+..+.+.| |..
T Consensus 74 ~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~l~~~R~l~G~g~g~~~~~~ 145 (432)
T PRK10406 74 LMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL----PGYE----TIGTWAPALLLLARLFQGLSVGGEYGTS 145 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc----CCch----hHHHHHHHHHHHHHHHHHhhhhhhHhhH
Confidence 3344888999999999999999999888888777664321 1000 0000111223334445555444 455
Q ss_pred hhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH--------HhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 360 PTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVIC--------DHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 360 ~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~--------~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
..+.+|.+|++.||+..++.......|..+++.+...+. ..+||...|++.++..++ .++....+||++
T Consensus 146 ~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll-~~~~~~~~~e~~ 222 (432)
T PRK10406 146 ATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV-ALWLRRQLDETS 222 (432)
T ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-HHHHHhcCCCCc
Confidence 678999999999999998877766666666655544332 246777777765554443 333445577764
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-08 Score=100.35 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc
Q psy13206 277 CTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG 356 (478)
Q Consensus 277 ~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g 356 (478)
......++..+++++.|+++||+|||+++..+.++.++..+....... .. ...+...+.....+++.+. ..
T Consensus 68 ~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~----~~----~~~~~~~~~~~l~gi~~g~-~~ 138 (452)
T PRK11273 68 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW----AT----SSIAVMFVLLFLCGWFQGM-GW 138 (452)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc----cc----ccHHHHHHHHHHHHHHHhc-cc
Confidence 334455666788999999999999999998888877776655432110 00 0011111112222222222 22
Q ss_pred ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHH-HHHHhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 357 PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQ-VICDHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 357 ~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~-~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
+.......|.+|++.|+++.++.+....+++.+.+.+.. .+....++...+++.++.+++..++.++++||+.
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 333456778999999999999998888888654444432 2323346666777766666666666667777764
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.9e-08 Score=94.14 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=117.8
Q ss_pred hHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccc
Q psy13206 254 SAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDL 333 (478)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 333 (478)
+......+.+-++.+.+.....+....++.+..+++++...+.||+.||++++....+..+..++...- +
T Consensus 30 fv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA----p------ 99 (394)
T COG2814 30 FVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA----P------ 99 (394)
T ss_pred HHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh----c------
Confidence 334445566555555554455666677788888999999999999999999998888888777664421 1
Q ss_pred cccchHHHHHHHHHHHHHHh---cccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q psy13206 334 SKFNWIPLISITCFAVIYSI---GLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIY 410 (478)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~ 410 (478)
++.. +....+..+. ...+....+..++.|+++|+++.++......++..++..+-.++-+.+||...|+..
T Consensus 100 ---~f~~---Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~i 173 (394)
T COG2814 100 ---SFAV---LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAI 173 (394)
T ss_pred ---cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHH
Confidence 1111 1111222222 223456678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhheeec
Q psy13206 411 SLGCIICGVLVYFIIP 426 (478)
Q Consensus 411 ~~~~~l~~~~~~~~~p 426 (478)
+...++..+..+..+|
T Consensus 174 a~l~ll~~~~~~~~lP 189 (394)
T COG2814 174 AVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9888888888888888
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.5e-07 Score=84.20 Aligned_cols=320 Identities=14% Similarity=0.153 Sum_probs=170.0
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccC-----chhHHHhhhHHH-HHHHHHHHHh-----h-------hH---
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVG-----RKPCLLTTGPLY-IISWLLVIFT-----K-------HV--- 88 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~G-----Rr~~l~~~~~l~-~i~~~~~~~a-----~-------~~--- 88 (478)
+.+.+.-.+.+.+..++-.. ..+.+|+.+|+.+ ||..+++...+. ..+..+..++ . +.
T Consensus 10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g 88 (403)
T PF03209_consen 10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG 88 (403)
T ss_pred hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence 56666667777777777655 5889999999999 888776554443 3333333222 2 11
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC-----CccchhhHHHHHHH--HH
Q psy13206 89 -YVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG-----PYVDYDTLAYVSLV--IP 160 (478)
Q Consensus 89 -~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g-----~~~~~~~~~~~~~~--~~ 160 (478)
....+.=.+.|+|.+...+...++++|.+|+++|+++.++.-.+..+|++++..+. ++...|....+... +.
T Consensus 89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~ 168 (403)
T PF03209_consen 89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIA 168 (403)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 23444456779999999999999999999999999999999888888887765543 33333333222221 11
Q ss_pred HHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHH
Q psy13206 161 VVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLI 240 (478)
Q Consensus 161 ~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (478)
+++.+.-.|-.|.++ .+... ...+++......+++...+|+.++.+..
T Consensus 169 ~~l~~ia~wg~E~r~----------------------~~~~~----------~~~~~~~~f~~a~~~~~~~~~a~~f~~f 216 (403)
T PF03209_consen 169 LLLNLIALWGQEPRR----------------------SRRAA----------AAERPRPPFREAWRQVWASPQARRFFVF 216 (403)
T ss_pred HHHHHHHHHhcccCC----------------------ccccc----------CCCCCCccHHHHHHHHHhCCChhHHHHH
Confidence 122222223233221 00000 0000011122345555556665554443
Q ss_pred HHHHHHHhhhhhhhHHH-HhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhh-hcCCchhHHHhhHHHHHHHHH
Q psy13206 241 VQIVAVADVISGMSAVL-PYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVD-RTGRRPLLLVSCFGSGISQLI 318 (478)
Q Consensus 241 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~D-r~GRr~~l~~~~~~~~i~~~~ 318 (478)
..+..+. +.....++ ||.-+++. .+.......+.+.+.+.+++-...+++.. |.+.++.-..++.+++++..+
T Consensus 217 l~l~t~a--~~~QD~iLEPygg~Vfg---msv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l 291 (403)
T PF03209_consen 217 LFLGTLA--FFMQDVILEPYGGEVFG---MSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL 291 (403)
T ss_pred HHHHHHH--HHhhHHHcCCchhHHcC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 3322221 11222222 33333332 12223345556667777888877777666 677777766777777666554
Q ss_pred HHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13206 319 AGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVI 397 (478)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l 397 (478)
+....... ..+.....+..+++..+...- ..-...-++.+++..|+.+|.=...+.++..++...-+.+
T Consensus 292 ii~a~~~~---------~~~~~~~~~~l~G~g~G~f~v-gals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 292 IILAGPLG---------SPWLFRPGVFLLGLGNGLFTV-GALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHHHHhcc---------cchHHHHHHHHHHHhhhHHHH-HHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43222111 122222222222222221110 1112334667777788888776555555555544444443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-09 Score=106.43 Aligned_cols=133 Identities=16% Similarity=0.151 Sum_probs=105.4
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhccc--CchhHHHh--hhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV--GRKPCLLT--TGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIV 105 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~--GRr~~l~~--~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~ 105 (478)
.+.++.+.+++.++..++.++++++.|+++||. ++|+...+ +.++..++.++..++++++.+++.+++.|++.|..
T Consensus 271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~ 350 (455)
T TIGR00892 271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV 350 (455)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchH
Confidence 467888899999999999999999999999984 34443333 33444455556677889999999999999999999
Q ss_pred hhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----c-chhhHHHHHHHHHHH
Q psy13206 106 FTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----V-DYDTLAYVSLVIPVV 162 (478)
Q Consensus 106 ~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~-~~~~~~~~~~~~~~~ 162 (478)
.+....++.|..|++++|...++.+....+|..+++.++.. . +|+..+++.....++
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li 412 (455)
T TIGR00892 351 GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVS 412 (455)
T ss_pred HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHH
Confidence 99999999999999999999999999999998888776543 2 466666665544443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=103.23 Aligned_cols=139 Identities=20% Similarity=0.244 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc
Q psy13206 277 CTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG 356 (478)
Q Consensus 277 ~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g 356 (478)
......++..++.++.|+++||+|||+.++.+.++.+++.++..... . .... ..+....++.+.+.+
T Consensus 76 ~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---~-------~~~~---~~~~~~r~l~G~~~~ 142 (481)
T TIGR00879 76 VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---F-------ALSV---EMLIVGRVLLGIGVG 142 (481)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---c-------ccch---HHHHHHHHHHHhhhh
Confidence 33445666778899999999999999999888777766655442111 0 0010 011222233333332
Q ss_pred ---ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHH---HHHHHhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 357 ---PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMY---QVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 357 ---~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~---~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
+....+.+|.+|++.|+++.++.+....+|..+++.+. ....+..++...+.+.++ ..+..++..+++||+.
T Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~-~~~~~~~~~~~l~~~~ 220 (481)
T TIGR00879 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI-PAGLLFLGLFFLPESP 220 (481)
T ss_pred HHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH-HHHHHHHHHhcCCCCh
Confidence 34567889999999999999999999999999888877 443345566666666443 3444444556778874
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-08 Score=99.74 Aligned_cols=145 Identities=12% Similarity=0.052 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 276 ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 276 ~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
.......++..+++++.|+++||+|||+.+..+.++.+++.+..... +.. ....+...+.....+++.+. .
T Consensus 65 ~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~l~~~~~l~g~~~g~-~ 135 (438)
T TIGR00712 65 FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFV----PWA----TSSIAIMFVLLFLNGWFQGM-G 135 (438)
T ss_pred HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcc----ccc----cchHHHHHHHHHHHHHHhhc-c
Confidence 33444556677888999999999999998888777766665543211 000 00001111111122222222 1
Q ss_pred cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 356 GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD-HYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 356 g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~-~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
.+....+..|.+|++.|+++.++.+....+++.+++.+.+...+ ..++...|++.++.+++..+..+++.||++
T Consensus 136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 23344567899999999999999999999999888887776444 456777787777777776666667777753
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.7e-09 Score=95.56 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHh-
Q psy13206 275 DECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSI- 353 (478)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 353 (478)
+..+..+++.+++.++..|.++||+|||++++++.+..++.....+.. .++ .+..+ ..+.-+.
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-------------~~F-~afv~--aR~l~Gi~ 134 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-------------RNF-AAFVL--ARFLGGIF 134 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-------------HHH-HHHHH--HHHhhhhc
Confidence 445566788999999999999999999999998887777754443211 011 11111 1222222
Q ss_pred -cccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13206 354 -GLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD 399 (478)
Q Consensus 354 -g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~ 399 (478)
|.-....++.+|+++++.|+.+++..+....+|-.++|.+-+++..
T Consensus 135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 3334567899999999999999999999999999999999888876
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-08 Score=101.29 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhc---
Q psy13206 278 TLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIG--- 354 (478)
Q Consensus 278 ~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--- 354 (478)
.....++..++.++.|+++||+|||+.+..+.++.++..+..+.. . ++..+ ....+..+.+
T Consensus 61 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~---------~~~~l---~~~~~l~G~~~~~ 124 (496)
T PRK03893 61 ISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA----P---------GYWTL---FIARLVIGMGMAG 124 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH----h---------HHHHH---HHHHHHHHHHHHH
Confidence 334556667888999999999999999888877777766554321 1 01111 1112222222
Q ss_pred ccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 355 LGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 355 ~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
..+....+..|.+|++.|+++.++.+....+|..+++.+.+.+.+..++...+++.. ...+..+......||++
T Consensus 125 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~-~~~~~~~~~~~~~p~~~ 198 (496)
T PRK03893 125 EYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGI-LPIIFALWLRKNLPEAE 198 (496)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH-HHHHHHHHHHHhCCCch
Confidence 234456678899999999999999999999999999999999888888776665433 22333333334456653
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=104.54 Aligned_cols=117 Identities=17% Similarity=0.255 Sum_probs=106.1
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh------------------h---
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK------------------H--- 87 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~------------------~--- 87 (478)
-+++++++.|++.+.+=+|..+...+..+.+-|.-|-+.+-++.++++++++++++-+ +
T Consensus 126 RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~ 205 (735)
T KOG3626|consen 126 RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSS 205 (735)
T ss_pred hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCcc
Confidence 5788999999999999999999999999999999999999999999999999986620 0
Q ss_pred -------------------------------HHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHh
Q psy13206 88 -------------------------------VYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTG 136 (478)
Q Consensus 88 -------------------------------~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G 136 (478)
+..++++.++.|+|....++....|+-|...+++-..+.++......+|
T Consensus 206 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lG 285 (735)
T KOG3626|consen 206 SLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILG 285 (735)
T ss_pred ccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhh
Confidence 2378889999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC
Q psy13206 137 ILLEYTVGP 145 (478)
Q Consensus 137 ~~l~~~~g~ 145 (478)
+++|.++|.
T Consensus 286 PaiGfllgS 294 (735)
T KOG3626|consen 286 PAIGFLLGS 294 (735)
T ss_pred hHHHHHHHH
Confidence 999888774
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-08 Score=97.54 Aligned_cols=141 Identities=19% Similarity=0.252 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccc
Q psy13206 280 LLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLV 359 (478)
Q Consensus 280 ~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 359 (478)
+..++.++|++..++++||+|||+.+.++.+...+..+++........ .....+.-+..+...+.. ....
T Consensus 68 ~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~---------~e~li~GR~i~Gl~~gl~-~~~~ 137 (485)
T KOG0569|consen 68 IFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPS---------FEMLILGRLIVGLACGLS-TGLV 137 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHHHhHHH-HHHH
Confidence 345677889999999999999999888887777666555443322110 001111111112111211 1345
Q ss_pred hhhhcccCCccccchhhHHHHHHHHHHHHHHHHH-HHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCC
Q psy13206 360 PTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKM-YQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKG 430 (478)
Q Consensus 360 ~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~-~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~ 430 (478)
+.|..|+.|++.||....+......+|..++..+ .+.+......|...+.+.....+..++...++||+.+
T Consensus 138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 6789999999999999999888888887777443 3334333222222333333444555556688999853
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=101.30 Aligned_cols=126 Identities=10% Similarity=0.164 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhc
Q psy13206 37 SSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEI 116 (478)
Q Consensus 37 ~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~ 116 (478)
.++..+.+.++.++++++.|++.||+|||+.+..+..+..++.++..+.++.+.+.+++++.|++.+...+.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45667778888999999999999999999999999999988888888888999999999999999999999988999999
Q ss_pred cccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHH
Q psy13206 117 SGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVV 162 (478)
Q Consensus 117 ~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~ 162 (478)
.|+++||+..+..+....+|..+++.+.. ..+|+..+.......++
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~ 380 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVL 380 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999988887777766665443 34677666655544443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.6e-08 Score=94.78 Aligned_cols=130 Identities=13% Similarity=0.053 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccc
Q psy13206 278 TLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGP 357 (478)
Q Consensus 278 ~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 357 (478)
.....++..++.++.|++.||+|||+.+..+.++.++..+.... .+ ..+...+.....+++.+.. .+
T Consensus 48 ~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~----~~--------~~~~~~~~~~l~G~~~g~~-~~ 114 (394)
T PRK03699 48 FTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF----SH--------SLALFSIAMFVLGVVSGIT-MS 114 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----cc--------hHHHHHHHHHHHHHhhHhh-cc
Confidence 33455667788899999999999999988887776666554331 11 0111111112222222221 23
Q ss_pred cchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHH
Q psy13206 358 LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD-HYGVYLNFYIYSLGCIICGVL 420 (478)
Q Consensus 358 ~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~-~~g~~~~~~~~~~~~~l~~~~ 420 (478)
....+.+|.+|++.|+.+.+..+....+++.+.|.+.+.+.+ ..++...+.+.++..++..++
T Consensus 115 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 115 IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999888888888888888877654 457777777666655554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=102.23 Aligned_cols=141 Identities=15% Similarity=0.009 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccccc
Q psy13206 279 LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPL 358 (478)
Q Consensus 279 ~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~ 358 (478)
....++..++.++.|+++||+|||+++..+.+..++..+..+....... ...+..++.-...+++.+. ..|.
T Consensus 71 s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~-~~~~ 142 (467)
T PRK09556 71 LGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGS-------VSLGLMIALWALSGFFQST-GGPC 142 (467)
T ss_pred HHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHhc-cchH
Confidence 3345566678899999999999999998888877777665553211100 0011111111112222222 2355
Q ss_pred chhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHHHhheeecC
Q psy13206 359 VPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHY---GVYLNFYIYSLGCIICGVLVYFIIPE 427 (478)
Q Consensus 359 ~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~---g~~~~~~~~~~~~~l~~~~~~~~~pE 427 (478)
...+.+|.+|++.||++.|+......+|..+++.+..++.... ++...+.+.++..++.+++.+++.++
T Consensus 143 ~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 143 SYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred HHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 6678999999999999999999988899888888776655542 34445555566666565655555544
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.9e-09 Score=100.99 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=97.8
Q ss_pred ccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhh
Q psy13206 31 EMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAP 110 (478)
Q Consensus 31 ~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~ 110 (478)
+.++.+.+++.++..++.++++++.|++.||+|||+++..+..+..++.++.. . .......+++.|++.++..|...
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHH
Confidence 56777889999999999999999999999999999999888888877665443 2 33445678889998888899999
Q ss_pred hhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHH
Q psy13206 111 MYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPV 161 (478)
Q Consensus 111 ~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~ 161 (478)
.++.|..|+++++...+.......+|..+++.++. ..++++.+.+.....+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l 362 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSF 362 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 99999999988887776666667777766665543 2355555554443333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-07 Score=94.64 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=87.0
Q ss_pred HHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc---ccch
Q psy13206 284 LVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG---PLVP 360 (478)
Q Consensus 284 ~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g---~~~~ 360 (478)
...+++++.|+++||+|||+.+..+.++.++++++.+.. +++. ...+.....+....+..+++.+ +...
T Consensus 76 ~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~l~~~R~l~G~~~g~~~~~~~ 147 (438)
T PRK09952 76 FRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLL----PSFS----TIGWWAPVLLVTLRAIQGFAVGGEWGGAA 147 (438)
T ss_pred HHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC----CcHH----HHHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence 345777889999999999999999888888776654421 1100 0001111223334455555544 3445
Q ss_pred hhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH--------hcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 361 TLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD--------HYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 361 ~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~--------~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
.+.+|.+|++.||...+.......+|..++..+...+.. .++|...|++.++..++ .++.....||++
T Consensus 148 ~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~ 223 (438)
T PRK09952 148 LLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESA 223 (438)
T ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence 688999999999999998888878887777666555442 45777777665544332 333334567764
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.7e-08 Score=96.90 Aligned_cols=158 Identities=11% Similarity=0.019 Sum_probs=90.7
Q ss_pred HhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccc
Q psy13206 258 PYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFN 337 (478)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 337 (478)
++.+....+.+.+..+.........+...++.++.|+++||+|||+.+..+.++.+++.+......... .+
T Consensus 34 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~---------~~ 104 (402)
T TIGR00897 34 GWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGH---------AN 104 (402)
T ss_pred HhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC---------cc
Confidence 444444444333323334444556677788999999999999999999888777776654321111000 01
Q ss_pred hHHHHHHHHHHHHHHhcccc---cchhhhcccCCccccchhhHHHHHHHHHHH-HHHHHHHHHHHHhcccchHHHHHHHH
Q psy13206 338 WIPLISITCFAVIYSIGLGP---LVPTLQGEFFPSNTRGLAGGVTTITLTVIS-FLVMKMYQVICDHYGVYLNFYIYSLG 413 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~g~---~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~-~i~~~~~~~l~~~~g~~~~~~~~~~~ 413 (478)
+..+. ......+.+.+. ....+..+.+|+++|+++.|+.+....+|. .+++.+.+.+.+..|+...++.....
T Consensus 105 ~~~l~---~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 105 YPLIL---LFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHH---HHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 11111 122223333322 233456788999999999999998888886 46677766776666643333333323
Q ss_pred HHHHHHHhheeecC
Q psy13206 414 CIICGVLVYFIIPE 427 (478)
Q Consensus 414 ~~l~~~~~~~~~pE 427 (478)
..+..++.+++.++
T Consensus 182 ~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 182 VLTGGVIALFSNKD 195 (402)
T ss_pred HHHHHHHHHhccCC
Confidence 33333333344444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-08 Score=102.08 Aligned_cols=136 Identities=13% Similarity=0.204 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc--
Q psy13206 279 LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG-- 356 (478)
Q Consensus 279 ~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-- 356 (478)
....++..++.++.|+++||+|||+.+..+.++.++..++...... . .+ ..+....++.+.+.+
T Consensus 83 s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~---------~~---~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 83 SSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG--G---------GI---ALVVFCRVIQGLAQGSV 148 (465)
T ss_pred HHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH--c---------Cc---hHHHHHHHHHHHhcccc
Confidence 3345667788999999999999999998887777766554321110 0 01 112223333344333
Q ss_pred -ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHhheeecCC
Q psy13206 357 -PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHY-GVYLNFYIYSLGCIICGVLVYFIIPES 428 (478)
Q Consensus 357 -~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~-g~~~~~~~~~~~~~l~~~~~~~~~pEt 428 (478)
|....+.+|.+|++.|+++.++.+....+|..+++.+.+.+.+.. +++..|++.++..++..++.+.+.||.
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 445668899999999999999999999999999999999988884 888888887777666666555555554
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-07 Score=88.43 Aligned_cols=89 Identities=20% Similarity=0.221 Sum_probs=77.7
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
..+.+..|.+.+...-+.+..+...+.|.++||+|||+..+...++++++++. -.++|+..|+++|++.|++....+.+
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~ 141 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSA 141 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999998864 45689999999999999999998888
Q ss_pred hhhh-hhhccc
Q psy13206 109 APMY-IGEISG 118 (478)
Q Consensus 109 ~~~~-~~E~~p 118 (478)
-=++ +.|.-.
T Consensus 142 FEsW~V~Eh~~ 152 (354)
T PF05631_consen 142 FESWMVHEHNK 152 (354)
T ss_pred HHHHHHHHHHH
Confidence 7776 467643
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9e-08 Score=96.91 Aligned_cols=126 Identities=18% Similarity=0.270 Sum_probs=84.7
Q ss_pred HHHHHhhhhhHhhhh-cCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhc-ccccchh
Q psy13206 284 LVFLSTFPTAFLVDR-TGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIG-LGPLVPT 361 (478)
Q Consensus 284 ~~~~~~~~~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~g~~~~~ 361 (478)
......+++|+++|| +|||++++.+.++.+++.+.+.... . ... .+.+.......+.| ..|....
T Consensus 62 ~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~---~--------~~~--ll~~~~~l~~ig~g~~~~~~~~ 128 (489)
T PRK10207 62 LVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL---L--------KPD--LIFIALGTIAVGNGLFKANPAS 128 (489)
T ss_pred HHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc---c--------chh--HHHHHHHHHHhccccccCCHHH
Confidence 334455689999999 9999999999888888776654210 0 001 11111111222222 2355677
Q ss_pred hhcccCCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhe
Q psy13206 362 LQGEFFPSNT--RGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYF 423 (478)
Q Consensus 362 ~~~El~p~~~--Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~ 423 (478)
+.+|.+|++. |+.+.++.+...++|+.++|.+.+++.++.|++..|++.++ .++.+++.+.
T Consensus 129 li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~ 191 (489)
T PRK10207 129 LLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYF 191 (489)
T ss_pred HHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHH
Confidence 8899998884 57889999999999999999999999999998777766443 3444444333
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-09 Score=100.73 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=112.6
Q ss_pred CchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHH
Q psy13206 273 TPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYS 352 (478)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (478)
.....+....+...+++++.|+++||+.||+++.++..+..++.+..+... -...+..+..+-+
T Consensus 69 ~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~----------------~Fwq~~l~R~~vG 132 (493)
T KOG1330|consen 69 ELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN----------------HFWQVLLCRGFVG 132 (493)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhc
Confidence 334556667788889999999999999999999999888888776654321 0122333444445
Q ss_pred hcc---cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHhheeecCC
Q psy13206 353 IGL---GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG-VYLNFYIYSLGCIICGVLVYFIIPES 428 (478)
Q Consensus 353 ~g~---g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~l~~~~~~~~~pEt 428 (478)
+|- .|+.+.+.++.||...|++..++.+.+..+|..++..+-..+.+..+ |++.|..-++..+++++++.++.+|.
T Consensus 133 iGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP 212 (493)
T KOG1330|consen 133 IGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREP 212 (493)
T ss_pred cchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCc
Confidence 443 46778899999999999999999999999999887777666766666 67788888889999999999999887
Q ss_pred CCCCHHH
Q psy13206 429 KGKTFAQ 435 (478)
Q Consensus 429 ~~~~~~~ 435 (478)
..+..++
T Consensus 213 ~rga~~~ 219 (493)
T KOG1330|consen 213 ERGARDE 219 (493)
T ss_pred ccccccc
Confidence 6554433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-07 Score=92.34 Aligned_cols=147 Identities=16% Similarity=0.069 Sum_probs=87.9
Q ss_pred CchhhHHHH---HHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHH
Q psy13206 273 TPDECTLLL---GILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAV 349 (478)
Q Consensus 273 ~~~~~~~~~---~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (478)
+..+.+.+. .+...++.++.|++.||+|.|+++..+.++.++.++.++... . +.. .++..++. ..+..
T Consensus 68 s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~--~-~~~-----~s~~~lli-~r~l~ 138 (462)
T PRK15034 68 TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAV--Q-NPN-----TPFGIFIV-IALLC 138 (462)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--c-ccC-----CCHHHHHH-HHHHH
Confidence 444444443 444556667889999999999999888888777665544210 0 000 01111111 11111
Q ss_pred HHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH-----Hhcc-------------cchHHHHHH
Q psy13206 350 IYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVIC-----DHYG-------------VYLNFYIYS 411 (478)
Q Consensus 350 ~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~-----~~~g-------------~~~~~~~~~ 411 (478)
..+.+..+.....+++.||++.||++.|+....+++|..+.+.+.+.+. +.+| .....++++
T Consensus 139 Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~ 218 (462)
T PRK15034 139 GFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWV 218 (462)
T ss_pred HHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHH
Confidence 1122222344557889999999999999998788888877776666543 2222 333445667
Q ss_pred HHHHHHHHHhheeecCC
Q psy13206 412 LGCIICGVLVYFIIPES 428 (478)
Q Consensus 412 ~~~~l~~~~~~~~~pEt 428 (478)
+..++.+++.+++.++.
T Consensus 219 ~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 219 PLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 66667776666666553
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-07 Score=92.36 Aligned_cols=303 Identities=19% Similarity=0.253 Sum_probs=169.6
Q ss_pred HHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhhhhhhhhhhhcccccc
Q psy13206 44 IELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLA--MGIVFTVAPMYIGEISGAKC 121 (478)
Q Consensus 44 ~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~--~g~~~~~~~~~~~E~~p~~~ 121 (478)
-.+...+.+...|.++||+|||..+........+..+...+.. +|.++ +.|+. .+.....+.+|+++....++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhH
Confidence 3567788899999999999999999999999998888887766 44333 44443 34566788888999999999
Q ss_pred chhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHHHH-HhhccccCChHHHHHcCCHHHHHHHHHHHhCC
Q psy13206 122 RGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIMKGRDVDARKSLFWLRGG 196 (478)
Q Consensus 122 Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~~~-~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~ 196 (478)
|....+..+..+..+..+++.++.. .+.-..+++.....++.. .....+|||-.- +.+. + ...+.....
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~-~--~~~~~~~~~ 219 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERS-D--ATLRELTPG 219 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc---cccc-c--ccccccCCC
Confidence 9999999999887777777766643 233334444444433332 234557888420 0000 0 000000000
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhc--------C
Q psy13206 197 RESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFART--------E 268 (478)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 268 (478)
+.. +....+..+.......+|..+....... ..+.+...... .
T Consensus 220 ~~~-------------------~~~~~~~~~~~~~~~~~r~~l~l~l~~~----------~~~~~~~~~~~~~~~~yl~~ 270 (463)
T KOG2816|consen 220 SLD-------------------SSHVADAFQSLTKVGPDRLLLLLLLVAF----------LSSLPEAGGASDVLLLYLKA 270 (463)
T ss_pred ccc-------------------chhhhhhhhhhcccCCCccchHHHHHHH----------HHHHHHhcCceeEEEEEEee
Confidence 000 0000011111111122222222111111 11111110000 0
Q ss_pred CCCCCchhhH---HHHHHHHHHHhhhh-hHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHH
Q psy13206 269 GSLITPDECT---LLLGILVFLSTFPT-AFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISI 344 (478)
Q Consensus 269 ~~~~~~~~~~---~~~~~~~~~~~~~~-g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (478)
...-+...++ ...+....++.++. ..+...+|-|++...++..-.+.....+... ..|.....
T Consensus 271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~------------~~w~~~~~- 337 (463)
T KOG2816|consen 271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT------------ETWMMFAA- 337 (463)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc------------cchhhhHH-
Confidence 0001222222 22333444455544 4778888888877766666666555443221 12222221
Q ss_pred HHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13206 345 TCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH 400 (478)
Q Consensus 345 ~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~ 400 (478)
.....++....|...+..+-+..++.+|+..++...+..+.+.+.|.+++.+...
T Consensus 338 -~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 338 -GVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred -HHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1122233334455667788888999999999999999999999999999877543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.1e-07 Score=86.40 Aligned_cols=150 Identities=22% Similarity=0.367 Sum_probs=116.2
Q ss_pred CcccccCcchhh-HHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhh
Q psy13206 27 ETYIEMTSAESS-WVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIV 105 (478)
Q Consensus 27 ~~~~~~~~~~~~-~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~ 105 (478)
+.+.|++.+|.. =+.-+..-++.+..++...+.|..|-|+++++..+...+...+.-+.++...+-+..++.|++.+.+
T Consensus 32 ~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~e 111 (412)
T PF01770_consen 32 GPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAE 111 (412)
T ss_pred CCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH
Confidence 335688877763 3555666778889999999999999999999999999999999999999999999999999998775
Q ss_pred hhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC------ccchhhHHHHHHHHHHHHHHhhccccCChHHH
Q psy13206 106 FTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP------YVDYDTLAYVSLVIPVVFLMTFIWMPESPYFL 177 (478)
Q Consensus 106 ~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l 177 (478)
.+-++|+--..|+++--++.+.......+|..++.++|- ..+++.+.++......+.++.-+++|-.++-+
T Consensus 112 -vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~ 188 (412)
T PF01770_consen 112 -VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSL 188 (412)
T ss_pred -HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 455667666678887778888888877777777666663 34566777777665566555556677655433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.1e-08 Score=97.92 Aligned_cols=134 Identities=23% Similarity=0.333 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 276 ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 276 ~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
....+..++.+++.++.|+++||+|||++++.+.++.+++.+..+. .+ ++. .+..+.++.+++.
T Consensus 131 ~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~----~~---------~~~---~~~~~r~l~G~~~ 194 (505)
T TIGR00898 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF----SP---------NYT---VFLVFRLLVGMGI 194 (505)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH----cc---------cHH---HHHHHHHHHHhhc
Confidence 3344566777889999999999999999998887777766554331 11 111 1222223333333
Q ss_pred ---cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 356 ---GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 356 ---g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
.+....+.+|.+|++.|+.+.++......+|..+.+.+...+.+ +...+++.++..++..+.. +++||+.
T Consensus 195 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp 267 (505)
T TIGR00898 195 GGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESP 267 (505)
T ss_pred cchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCCh
Confidence 34566789999999999999999888877787777766544433 4556666666555554444 6788874
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=98.18 Aligned_cols=115 Identities=11% Similarity=0.071 Sum_probs=101.4
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVA 109 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~ 109 (478)
.+.++.+.+++.+.+.+|.++|.++.|++.||.++|+.+..+.++..++.++.++.++.+.+.++.++.|++.+...+..
T Consensus 254 ~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 333 (417)
T PRK10489 254 WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQ 333 (417)
T ss_pred cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999888888888888888888888888888888899999999998888888
Q ss_pred hhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC
Q psy13206 110 PMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG 144 (478)
Q Consensus 110 ~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g 144 (478)
.+++.|..|+++||+..++......+|..+++.++
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 334 YTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 89999999999999999998877777777666654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-07 Score=93.79 Aligned_cols=149 Identities=13% Similarity=0.145 Sum_probs=96.7
Q ss_pred hhhHHHHhHHHHHHhc---CCCCCCchhhHHHHHHHHHHHhhhhhHhhhh-cCCchhHHHhhHHHHHHHHHHHHHHhhcc
Q psy13206 252 GMSAVLPYASSTFART---EGSLITPDECTLLLGILVFLSTFPTAFLVDR-TGRRPLLLVSCFGSGISQLIAGTYYLLSE 327 (478)
Q Consensus 252 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~~~~~~~~~ 327 (478)
+++...++.+.++.+. +.+................++.+++|+++|| +|||+++..+.++.+++.++++.. +
T Consensus 25 ~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~----~ 100 (475)
T TIGR00924 25 SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS----I 100 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc----c
Confidence 3445556666665543 2221222333334456677888999999999 899999999888877776554321 0
Q ss_pred cccccccccchHHHHHHHHHHHHHHhc-ccccchhhhcccCCccc---cchhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy13206 328 NYTVDLSKFNWIPLISITCFAVIYSIG-LGPLVPTLQGEFFPSNT---RGLAGGVTTITLTVISFLVMKMYQVICDHYGV 403 (478)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~El~p~~~---Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~ 403 (478)
..+...+... ....+.| ..|....+.+|.+|++. |+++.++.+...++|+.+++.+.+.+.++.++
T Consensus 101 --------~~~~~~~~~~--l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~ 170 (475)
T TIGR00924 101 --------YPDLIFYGLG--TIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY 170 (475)
T ss_pred --------cHhHHHHHHH--HHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 0111111111 1222222 23556678889998764 89999999999999999999999999988887
Q ss_pred chHHHHHHHHH
Q psy13206 404 YLNFYIYSLGC 414 (478)
Q Consensus 404 ~~~~~~~~~~~ 414 (478)
...|.+.++..
T Consensus 171 ~~~f~~~~~~~ 181 (475)
T TIGR00924 171 HVGFNLAAVGM 181 (475)
T ss_pred HHHHHHHHHHH
Confidence 77776655433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-07 Score=91.18 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=101.0
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhccc-----CchhHHHhhhHHHHHHHHHHHHhh----hHHHHHHHHHHHh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV-----GRKPCLLTTGPLYIISWLLVIFTK----HVYVLYVVRFMQG 99 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~-----GRr~~l~~~~~l~~i~~~~~~~a~----~~~~l~~~R~l~G 99 (478)
++++++.+.+.+.+...+...+ -+++|.++|-+ -||+=++++.++..++.+..+..+ +.....++=++.-
T Consensus 19 ~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~ 97 (433)
T PF03092_consen 19 DLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLAS 97 (433)
T ss_pred HcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHH
Confidence 6889999998888888877654 67889999998 355556667766666565555543 4666777778889
Q ss_pred hhhhhhhhhhhhhhhhccc--cccchhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHHh-hccccC
Q psy13206 100 LAMGIVFTVAPMYIGEISG--AKCRGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLMT-FIWMPE 172 (478)
Q Consensus 100 ~~~g~~~~~~~~~~~E~~p--~~~Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~-~~~~pE 172 (478)
+|......++-+++.|... ++.||...++......+|.+++..++. ..+++..+.+...+|.+..+. ..+.+|
T Consensus 98 ~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 98 FGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999984 334777777777778888887766542 235566666666666555433 333444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-06 Score=85.60 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccc
Q psy13206 41 VSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAK 120 (478)
Q Consensus 41 ~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~ 120 (478)
.++.+.-..+..++.+.+.|+.|.|+.+.++...+...-+..-+ +|-+.+++.-.+.|+|.+..+...-.|++|.+.++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 78888888899999999999999999999999999877666554 67888999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHhHHHH
Q psy13206 121 CRGALSTFFIGMLNTGILLE 140 (478)
Q Consensus 121 ~Rg~~~~~~~~~~~~G~~l~ 140 (478)
.+.+..+..=.....+.++|
T Consensus 135 tie~Nisi~Wai~~~~li~G 154 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIG 154 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 99988776544444444444
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-07 Score=91.40 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccc
Q psy13206 280 LLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLV 359 (478)
Q Consensus 280 ~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 359 (478)
...+...+..++.|+++||+|||++++.+.++.++..+..... . .. .+.....+ .......|..
T Consensus 46 ~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~----~---------~~--~~~r~l~G-~~~a~~~pa~ 109 (393)
T PRK11195 46 FFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG----I---------HP--LLAYGLVG-IGAAAYSPAK 109 (393)
T ss_pred HHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH----H---------HH--HHHHHHHH-HHHHHHHHHH
Confidence 3445666778889999999999999999888777655443211 0 01 11111111 1122234566
Q ss_pred hhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 360 PTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 360 ~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
.++.+|++|++.|+++.|+......++..++|.+.+.+.+.. +...+.+.+. +.+.+++..+++||++
T Consensus 110 ~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~-~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 110 YGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCAL-IYLLAALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHhcCCCCc
Confidence 778899999999999999999999999999999999887754 3333333332 2233344456777754
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-07 Score=93.89 Aligned_cols=114 Identities=10% Similarity=0.119 Sum_probs=101.6
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVA 109 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~ 109 (478)
.+.++.+.|++.++..++.+++.++.|++.||+|+|+.+.++.+...+..++.++++|.+.+++.++++|+..|...+..
T Consensus 235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~ 314 (382)
T TIGR00902 235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAA 314 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccchhhhHHHH-HHHHHhHHHHhhcC
Q psy13206 110 PMYIGEISGAKCRGALSTFFI-GMLNTGILLEYTVG 144 (478)
Q Consensus 110 ~~~~~E~~p~~~Rg~~~~~~~-~~~~~G~~l~~~~g 144 (478)
..|+.+. |+++|+...+..+ ....+|..+++.++
T Consensus 315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~ 349 (382)
T TIGR00902 315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA 349 (382)
T ss_pred HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 9999998877765 34556666655554
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-07 Score=88.50 Aligned_cols=142 Identities=19% Similarity=0.218 Sum_probs=98.0
Q ss_pred CCchhhHHHHHHHHH---HHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHH
Q psy13206 272 ITPDECTLLLGILVF---LSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFA 348 (478)
Q Consensus 272 ~~~~~~~~~~~~~~~---~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (478)
.++.+..++.++..+ +.-++-|.+.||+|.|+....+.++..+-++.++... .+ ..+ .-++...
T Consensus 46 LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~--~~--------~~~---~~ll~~g 112 (417)
T COG2223 46 LSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV--TY--------PST---WQLLVIG 112 (417)
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc--cC--------Cch---HHHHHHH
Confidence 455566665554444 4556789999999999998888887776655543211 11 111 0122223
Q ss_pred HHHHhccc--ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHhhe
Q psy13206 349 VIYSIGLG--PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG---VYLNFYIYSLGCIICGVLVYF 423 (478)
Q Consensus 349 ~~~~~g~g--~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g---~~~~~~~~~~~~~l~~~~~~~ 423 (478)
.+.+.+-+ .....++++.||++++|.+.|+.. .+|+|..+...+.|.+....+ ++....++.+..++.++..++
T Consensus 113 ll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~ 191 (417)
T COG2223 113 LLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL 191 (417)
T ss_pred HHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322 233457899999999999999999 999999999999999998888 777777788777777777776
Q ss_pred eecC
Q psy13206 424 IIPE 427 (478)
Q Consensus 424 ~~pE 427 (478)
...+
T Consensus 192 ~~~d 195 (417)
T COG2223 192 GMND 195 (417)
T ss_pred HhCC
Confidence 6543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.2e-07 Score=90.45 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=74.5
Q ss_pred HHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc---ccchhh
Q psy13206 286 FLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG---PLVPTL 362 (478)
Q Consensus 286 ~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g---~~~~~~ 362 (478)
.+++++.|+++||+|||++++.+.++..+..+..+.. +++. .........+....+..+.+.+ +....+
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~----~~~~----~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~ 141 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV----PGYA----TIGLAAPLLVLLGRLLQGFSAGVELGGVSVY 141 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC----CcHH----HHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence 3578889999999999999999888877776654421 1100 0000001122333444444443 334578
Q ss_pred hcccCCccccchhhHHHHHHHHHHHHHHHHHHHHH--------HHhcccchHHHH
Q psy13206 363 QGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVI--------CDHYGVYLNFYI 409 (478)
Q Consensus 363 ~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l--------~~~~g~~~~~~~ 409 (478)
.+|.+|++.|+++.++.....+++..+++.+.+.+ .+..|+...|++
T Consensus 142 ~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~ 196 (434)
T PRK15075 142 LAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLI 196 (434)
T ss_pred HHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHH
Confidence 99999999999999998887777766665554443 245677666654
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-07 Score=95.19 Aligned_cols=137 Identities=23% Similarity=0.210 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 276 ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 276 ~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
....+..++.++|+++.|.++||+|||++++.+.++..++.+..+.. + ++..+..+-++..++..+.
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a----~---------~~~~~~~~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA----P---------NYWMFLIFRFLSGFFGSGP 188 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh----C---------cHHHHHHHHHHHHhhccch
Confidence 34556677888999999999999999999999988888876543321 1 1222222222222222333
Q ss_pred cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 356 GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 356 g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
....+.+..|+++++.|+.+..+ ....+.++...+...+++.. +|...+++.+++..+..++ +++.||++
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 34566788999999999999999 88888888888888888776 4555555555555544444 56667874
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.1e-08 Score=95.98 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=88.9
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHH--HHHHHh--hhHHHHHHHHHHHhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISW--LLVIFT--KHVYVLYVVRFMQGLAMGIV 105 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~--~~~~~a--~~~~~l~~~R~l~G~~~g~~ 105 (478)
.+.++.+.+++.+...++..+++++.|+++||+|||+.+.....+..+.. +...+. ++.+.+.+..++.|++.+..
T Consensus 250 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 329 (394)
T TIGR00883 250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMY 329 (394)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999998876555544433 222222 46778888899999999999
Q ss_pred hhhhhhhhhhccccccchhhhHHH-HHHHHHhHHHHhhcC
Q psy13206 106 FTVAPMYIGEISGAKCRGALSTFF-IGMLNTGILLEYTVG 144 (478)
Q Consensus 106 ~~~~~~~~~E~~p~~~Rg~~~~~~-~~~~~~G~~l~~~~g 144 (478)
.+....++.|..|+++|++..+.. +.....|..+++.++
T Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~ 369 (394)
T TIGR00883 330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIA 369 (394)
T ss_pred hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHH
Confidence 999999999999999999887763 344445554444443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.8e-07 Score=88.31 Aligned_cols=119 Identities=15% Similarity=0.165 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc--
Q psy13206 279 LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG-- 356 (478)
Q Consensus 279 ~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-- 356 (478)
....++..+++++.|+++||+|||+++..+..+.+++.+..+.. + ++.. +....+..+++.+
T Consensus 51 s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a----~---------~~~~---ll~~r~l~Gig~~~~ 114 (393)
T PRK09705 51 ALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY----P---------QSAL---LLSSALLGGVGIGII 114 (393)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC----c---------chHH---HHHHHHHHHhHHHHH
Confidence 33455667888999999999999999999999888887765421 1 1111 1122222233222
Q ss_pred -ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHH
Q psy13206 357 -PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHY-GVYLNFYIYSLGC 414 (478)
Q Consensus 357 -~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~-g~~~~~~~~~~~~ 414 (478)
+....+..+.+| +.|+.+.++......+|..+++.+.+.+.++. ++...+.++++..
T Consensus 115 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~ 173 (393)
T PRK09705 115 QAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPA 173 (393)
T ss_pred hhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344567788887 77999999999888889999988888887765 5655555555443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=96.64 Aligned_cols=115 Identities=12% Similarity=0.193 Sum_probs=103.8
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
.++.++...|++.+.+.+|.++|+++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.|++.....+.
T Consensus 248 ~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~ 327 (524)
T PF05977_consen 248 VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSS 327 (524)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhc
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTV 143 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~ 143 (478)
..+.+.+..|++.||++.+..+.....+..++..+
T Consensus 328 ~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll 362 (524)
T PF05977_consen 328 LNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLL 362 (524)
T ss_pred HHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876666555554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.2e-07 Score=100.25 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccc
Q psy13206 280 LLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLV 359 (478)
Q Consensus 280 ~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 359 (478)
+..+..++++++.|+++||+|||++++.+.++.++..++........ ..+..++..++.+++. ....+..
T Consensus 55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~-~~~~~~~ 124 (1146)
T PRK08633 55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG---------WFWLAFAVTFLLGAQS-AIYSPAK 124 (1146)
T ss_pred HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc---------cHHHHHHHHHHHHHHH-HhhchHH
Confidence 34555678888999999999999999887766554444332211110 0111111111222211 1234556
Q ss_pred hhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13206 360 PTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH 400 (478)
Q Consensus 360 ~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~ 400 (478)
..+.+|++|++.|+++.|+......+|..+++.+.+.+...
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999998888765
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.8e-07 Score=88.28 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 276 ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 276 ~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
.......++.++++++.+++.||+|||+.+..+.++.+++.+....... .+ ++. ......+..+.|.
T Consensus 42 ~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-~~---------~~~---~~l~~~~l~G~g~ 108 (410)
T TIGR00885 42 LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-IM---------NYT---LFLVGLFILTAGL 108 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-hc---------cHH---HHHHHHHHHHhhH
Confidence 3444456677889999999999999999999988887777655321110 00 111 1111122223333
Q ss_pred c---ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13206 356 G---PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVIC 398 (478)
Q Consensus 356 g---~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~ 398 (478)
+ +....+..++.|++.|++..++.+....+|..+++.+.+.+.
T Consensus 109 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 109 GFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 223456778889999999999999999999999998887764
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.6e-07 Score=87.15 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=83.5
Q ss_pred hhhhhHhhhhc-----CCchhH-HHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhh
Q psy13206 289 TFPTAFLVDRT-----GRRPLL-LVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTL 362 (478)
Q Consensus 289 ~~~~g~l~Dr~-----GRr~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~ 362 (478)
.++.|.++||+ ||||.+ +.+.+..++.+..++. ... . .....+...............+...++
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~---~~~-~------~~l~~l~~~~~~~~~~~~~~~~~~~a~ 107 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF---LVP-S------TDLPLLAGLAFLIAFFSATQDIALDAW 107 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc---CCc-c------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999997 899874 4555555554433321 110 0 011111111111112222234556678
Q ss_pred hcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 363 QGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG--------VYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 363 ~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g--------~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
.+|.+|++.|+.+.++......+|..+++.+.+.+....+ +...|++.++..++..++.++..||++
T Consensus 108 ~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 108 RLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred HHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 8999999999999999999999999999999888887777 777777777655555444444567754
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=88.15 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=74.9
Q ss_pred HhhhhhHhhhh-cCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhc-ccccchhhhcc
Q psy13206 288 STFPTAFLVDR-TGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIG-LGPLVPTLQGE 365 (478)
Q Consensus 288 ~~~~~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~g~~~~~~~~E 365 (478)
..+++|+++|| +|||+.++.+.++.+++.+++... .+ ..+...+..... ..+.| ..+....+.+|
T Consensus 73 ~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~---~~--------~~~~l~~~~~l~--gig~g~~~~~~~~l~~~ 139 (500)
T PRK09584 73 LVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS---GH--------DAGIVYMGMATI--AVGNGLFKANPSSLLST 139 (500)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh---cc--------cHHHHHHHHHHH--HHhhhcccCCHHHHHHH
Confidence 34578999999 599999988888777765544311 00 001111111112 22222 23555678899
Q ss_pred cCCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy13206 366 FFPSNT--RGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSL 412 (478)
Q Consensus 366 l~p~~~--Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~ 412 (478)
.+|++. |+.+.++.+...++|+.++|.+.+++.+..|+...|.+.++
T Consensus 140 ~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 140 CYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred hcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 998654 45678888999999999999999999998888777776554
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.2e-07 Score=90.55 Aligned_cols=135 Identities=17% Similarity=0.325 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc--
Q psy13206 279 LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG-- 356 (478)
Q Consensus 279 ~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-- 356 (478)
.....+.+++.+++++++||+|-|+++..+.+++++.++++....... .+ .++...++.+++.+
T Consensus 80 ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~----------~~----~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 80 SSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG----------FY----LLLVLRFLQGLGQGVL 145 (466)
T ss_pred HHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc----------ch----hhHHHHHHhHHHHhHH
Confidence 335567788999999999999999999999999888887765433211 11 22333444444443
Q ss_pred -ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHhheeecC
Q psy13206 357 -PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH-YGVYLNFYIYSLGCIICGVLVYFIIPE 427 (478)
Q Consensus 357 -~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~-~g~~~~~~~~~~~~~l~~~~~~~~~pE 427 (478)
|....+.+...|+..|++..++......+|..++..+.+.+.+. .||...|++.++..++..++.+++..|
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566889999999999999999999999999999999999998 999999999998888887775555433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=98.21 Aligned_cols=138 Identities=13% Similarity=0.081 Sum_probs=86.4
Q ss_pred HHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccch
Q psy13206 281 LGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVP 360 (478)
Q Consensus 281 ~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 360 (478)
..+..++.++++|+++||+|||+++.....+..+.... +....... ..+. ++...+..........|...
T Consensus 61 ~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~-~~~~~~~~--------s~~~-l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 61 FILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAAL-AIYGFHLN--------SVPL-LFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHH-HHHHHHHh--------hHHH-HHHHHHHHHHHHHhhchHHH
Confidence 34555678888999999999999764322222221111 11111111 0111 22222111222223457777
Q ss_pred hhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 361 TLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 361 ~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
++.++++|++.|+.+.|+.++...++..++|.+.+.+....++...| +..+...+.+++..+++|+++
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence 89999999999999999999999999999999999998888776555 444444445555556666653
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-06 Score=84.51 Aligned_cols=175 Identities=11% Similarity=0.048 Sum_probs=93.7
Q ss_pred hHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhh----hcCCchhHHHh-hHHHHHHHHHHHHHHhhccc
Q psy13206 254 SAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVD----RTGRRPLLLVS-CFGSGISQLIAGTYYLLSEN 328 (478)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~D----r~GRr~~l~~~-~~~~~i~~~~~~~~~~~~~~ 328 (478)
....++.+.++...+.+............+..++..++.|.++| |+|||+.++.. .+...++.+++.........
T Consensus 21 ~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~ 100 (477)
T TIGR01301 21 ALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHL 100 (477)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhh
Confidence 33344555455443332222223333345566778888999999 59999987764 44444443333211000000
Q ss_pred ccc--cccccch---HHHHHHHHHHHHHHhcccccchhhhcccCCcccc--chhhHHHHHHHHHHHHHHHHHHHHH--HH
Q psy13206 329 YTV--DLSKFNW---IPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTR--GLAGGVTTITLTVISFLVMKMYQVI--CD 399 (478)
Q Consensus 329 ~~~--~~~~~~~---~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~R--g~~~g~~~~~~~lg~~i~~~~~~~l--~~ 399 (478)
... +.....+ ...+.+...-+..+...+ ...++.+|+.|+++| +.+.++.+....+|+.+++.+.+.. .+
T Consensus 101 ~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~-p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~ 179 (477)
T TIGR01301 101 FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG-PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYK 179 (477)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 000 0000011 111111122222222223 346789999999876 5788888888888888877766543 22
Q ss_pred hc-------------ccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 400 HY-------------GVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 400 ~~-------------g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
.+ +....|++-++..++..++..+..+|..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 180 IFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred hcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 11 1234566666667777777888889965
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.5e-07 Score=92.98 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=102.2
Q ss_pred CchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccc---------------c---c
Q psy13206 273 TPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVD---------------L---S 334 (478)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------~---~ 334 (478)
..........++.+++.++.+++.||.|||+.+..+.++.+++.++.+........+... . .
T Consensus 69 ~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~ 148 (633)
T TIGR00805 69 SSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMEN 148 (633)
T ss_pred cceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCC
Confidence 333444556777888899999999999999999999999988887766543222111000 0 0
Q ss_pred ----------------ccc-hHHHHHHHHHHHHHHhcccc---cchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHH
Q psy13206 335 ----------------KFN-WIPLISITCFAVIYSIGLGP---LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMY 394 (478)
Q Consensus 335 ----------------~~~-~~~~~~~~~~~~~~~~g~g~---~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~ 394 (478)
... ......+....++.++|.++ ....+..|.+|++.|+...++.+....+|..+++.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llg 228 (633)
T TIGR00805 149 LTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLG 228 (633)
T ss_pred CCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 000 00122233345555666554 3457899999999999999999999999999998888
Q ss_pred HHHHHhc---------------------c-cchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 395 QVICDHY---------------------G-VYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 395 ~~l~~~~---------------------g-~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
+.+.+.+ | |+..|++.++..++.++. ++++|++.
T Consensus 229 g~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~-l~~~p~~l 284 (633)
T TIGR00805 229 SFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP-FFFFPKAL 284 (633)
T ss_pred HHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHhCcccc
Confidence 8776532 1 344566666555555544 34556553
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.3e-07 Score=90.41 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=99.7
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCch--hHHHhhhHHHHHHHHHHHH--------hhhHHHHHHHHHHH
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRK--PCLLTTGPLYIISWLLVIF--------TKHVYVLYVVRFMQ 98 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr--~~l~~~~~l~~i~~~~~~~--------a~~~~~l~~~R~l~ 98 (478)
.++++..+...+.-+..+..++|++++|++.||+|-| ++++++++++.+..+...+ .++-+.+.+.=++.
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~ 390 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLI 390 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHH
Confidence 5778888888888888999999999999999999999 8999998888666555555 57788999999999
Q ss_pred hhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhc
Q psy13206 99 GLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTV 143 (478)
Q Consensus 99 G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~ 143 (478)
|+..|+..+.+.++.+|..|+++.+...+++...--....+++++
T Consensus 391 G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll 435 (477)
T PF11700_consen 391 GLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLL 435 (477)
T ss_pred HHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887766666666554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.2e-07 Score=87.41 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=94.9
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVA 109 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~ 109 (478)
.+.++.+.|++.+...++.++++++.|++.||+|+|+.+..+.+...++.++.+++++++.+++..++.|++.+...+..
T Consensus 235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 314 (382)
T PRK11128 235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAA 314 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788999888889999999999999999999999999999998888888889999999999999999999999999
Q ss_pred hhhhhhccccccchhhhHHHH-HHHHHhHHHHhhcC
Q psy13206 110 PMYIGEISGAKCRGALSTFFI-GMLNTGILLEYTVG 144 (478)
Q Consensus 110 ~~~~~E~~p~~~Rg~~~~~~~-~~~~~G~~l~~~~g 144 (478)
..++.+. +++++++..+... .....|..+++.++
T Consensus 315 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~ 349 (382)
T PRK11128 315 MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLS 349 (382)
T ss_pred HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 5556687777665 33445544444443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.2e-07 Score=84.59 Aligned_cols=110 Identities=23% Similarity=0.282 Sum_probs=94.0
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHhhhhhhhhhhhhhh
Q psy13206 35 AESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKH--VYVLYVVRFMQGLAMGIVFTVAPMY 112 (478)
Q Consensus 35 ~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~--~~~l~~~R~l~G~~~g~~~~~~~~~ 112 (478)
.+.+++.+.+.++..+++++.|.++||+|||+.+..+.....++.+.+++..+ .+.+++.|+++|++.|...+....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 46899999999999999999999999999998888888776777788888877 9999999999999999999999999
Q ss_pred hhhcccc-ccchhhhHHHHH-HHHHhHHHHhhcC
Q psy13206 113 IGEISGA-KCRGALSTFFIG-MLNTGILLEYTVG 144 (478)
Q Consensus 113 ~~E~~p~-~~Rg~~~~~~~~-~~~~G~~l~~~~g 144 (478)
+.|+.|+ ++|+...+.... ....|.++++.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLA 152 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 678877777666 4666666555433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.1e-06 Score=85.19 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=85.8
Q ss_pred HHhhhhhHhhhhc-----CCchh-HHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccch
Q psy13206 287 LSTFPTAFLVDRT-----GRRPL-LLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVP 360 (478)
Q Consensus 287 ~~~~~~g~l~Dr~-----GRr~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 360 (478)
.+.++.+.++||+ |||+. +..+.++.+++...++.. .+ . .....+........+......+...
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~---~~-~------~~l~~l~~~~~l~~~~~a~~~i~~~ 129 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL---EP-G------TQLRWLAALAVVIAFCSASQDIVFD 129 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc---CC-c------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999 99986 445555555544433211 10 0 0111111111111222223445567
Q ss_pred hhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 361 TLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD-HYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 361 ~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~-~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
++.+|.+|++.|+++.++......+|..+++.+...+.+ ..|+...|++.++..++..+.. ++.||+.
T Consensus 130 a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~-~~~~e~~ 198 (491)
T PRK11010 130 AWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT-LLAPEPT 198 (491)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence 889999999999999999999999999999988888887 4688888887776655554443 3468864
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.2e-06 Score=82.98 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=98.4
Q ss_pred hHHHHhHHHHHHhcCCCCCCchhhHHHHHHH-HHHHhhhhhHhhhhc-----CCch-hHHHhhHHHHHHHHHHHHHHhhc
Q psy13206 254 SAVLPYASSTFARTEGSLITPDECTLLLGIL-VFLSTFPTAFLVDRT-----GRRP-LLLVSCFGSGISQLIAGTYYLLS 326 (478)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~Dr~-----GRr~-~l~~~~~~~~i~~~~~~~~~~~~ 326 (478)
.....-.|..+.+.+.+ ..+.+.+..+. -.+..++.|.++||+ |||| .+..+.++.+++...+... .
T Consensus 16 ~~~~~~~~~~l~~~g~~---~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~---~ 89 (402)
T PRK11902 16 ALTSGTLQAWMTVEGLD---IQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC---P 89 (402)
T ss_pred HHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc---C
Confidence 33444556666665443 33333332221 246677889999999 8886 5666666666555543211 0
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-cccch
Q psy13206 327 ENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH-YGVYL 405 (478)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~-~g~~~ 405 (478)
. ......+..+.....++.....+...++.+|.+|+++|+++.++......++..+++.+...+.+. .|+..
T Consensus 90 ~-------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~ 162 (402)
T PRK11902 90 P-------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN 162 (402)
T ss_pred c-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence 0 001111222211222233334566778899999999999999999988888998888888887775 47777
Q ss_pred HHHHHHHHHHHHHHHhheeecCCC
Q psy13206 406 NFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
.|++.++..++..+ ..+..||++
T Consensus 163 ~f~i~a~~~l~~~l-~~~~~~e~~ 185 (402)
T PRK11902 163 TYLLMAGLMLAGAL-TTLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHHHHH-HHHhcCCCc
Confidence 77776765554444 345567764
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-06 Score=87.71 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=92.1
Q ss_pred CcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13206 33 TSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT-KHVYVLYVVRFMQGLAMGIVFTVAPM 111 (478)
Q Consensus 33 ~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a-~~~~~l~~~R~l~G~~~g~~~~~~~~ 111 (478)
++.+.+++.++..++.+++.+++|+++||+|||+++.++.++..++.++..+. ++.+.+++..++.|++.|...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899999999999999999999999999988888877776665 46677888899999999999999999
Q ss_pred hhhhccc-------cccchhhhHHHHHHHHHhHHHHhhc
Q psy13206 112 YIGEISG-------AKCRGALSTFFIGMLNTGILLEYTV 143 (478)
Q Consensus 112 ~~~E~~p-------~~~Rg~~~~~~~~~~~~G~~l~~~~ 143 (478)
+++|..+ ++++|...++.+....+|..+++.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i 373 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL 373 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999875 5667888888887777776555443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-06 Score=85.12 Aligned_cols=128 Identities=14% Similarity=0.237 Sum_probs=78.5
Q ss_pred HhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc---ccchhhhc
Q psy13206 288 STFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG---PLVPTLQG 364 (478)
Q Consensus 288 ~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g---~~~~~~~~ 364 (478)
..++.|++.||+|||+++.++.+..+++.+..+.... . . ... . ...+..+....+.|.+ +.......
T Consensus 77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~--~--~--i~~-s---~~~l~l~r~l~G~G~~~~~~~~~~~i~ 146 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQ--E--V--IEG-S---VVRLSVYNGLMTLGCMLFDLGAVVTVL 146 (591)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhc--c--c--ccC-c---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999999998888888766543210 0 0 000 1 1112222222223322 22334567
Q ss_pred ccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecC
Q psy13206 365 EFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPE 427 (478)
Q Consensus 365 El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pE 427 (478)
+.|| +.||++.|+......+|+.+.+.+...+... ++...+++.++...+.+++.+.++++
T Consensus 147 ~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-~~~~~fl~l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 147 SVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-NTSAYFFFLMSFALVVGILAIVFMRL 207 (591)
T ss_pred HhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhheeC
Confidence 8887 6799999999999999998766665554432 33345666666666666665555543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-06 Score=81.41 Aligned_cols=133 Identities=15% Similarity=0.129 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccc
Q psy13206 278 TLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGP 357 (478)
Q Consensus 278 ~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 357 (478)
.........+..+++|+++||+|-|+++..+.+..++++++++... .+..+....++++.+.++
T Consensus 68 ~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~----------------Sl~~L~i~R~llGvaEA~ 131 (511)
T TIGR00806 68 IPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT----------------SVWHMQLMEVFYSVTMAA 131 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH
Confidence 3344556678899999999999999999998888888777665321 122233334444444443
Q ss_pred --cchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHhheeecC
Q psy13206 358 --LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFY--IYSLGCIICGVLVYFIIPE 427 (478)
Q Consensus 358 --~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~--~~~~~~~l~~~~~~~~~pE 427 (478)
....+....+|++.|+++.|+.+....+|.++++.+.+. ...+|+..... ..+..+...+++..+++|-
T Consensus 132 ~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 132 RIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKR 204 (511)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455688899999999999999999999999999999998 55667643322 2344555556666677774
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.7e-07 Score=87.69 Aligned_cols=131 Identities=12% Similarity=0.183 Sum_probs=100.9
Q ss_pred cCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhh
Q psy13206 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPM 111 (478)
Q Consensus 32 ~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~ 111 (478)
.+..+.+++.++..+...++.++.|++.||+|||+.+.++.++.+++..+..+++|.+.+++.++++|++.+........
T Consensus 251 ~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 330 (396)
T TIGR00882 251 QGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFK 330 (396)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888889999999999999999999999999998888888788899999999999999998877777777
Q ss_pred hhhhccccccchhhhHH-HHHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHH
Q psy13206 112 YIGEISGAKCRGALSTF-FIGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVV 162 (478)
Q Consensus 112 ~~~E~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~ 162 (478)
+..|..|++.++...+. .+....+|..+++.++ ...+|+..+.+..+..++
T Consensus 331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i 386 (396)
T TIGR00882 331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLL 386 (396)
T ss_pred HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888898888875544 4455666666555443 234566666554444433
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=89.66 Aligned_cols=136 Identities=19% Similarity=0.234 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 276 ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 276 ~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
.......++..+++++.|+++|++|||+.++.+.+...++.++..... + ...+..-.++.++|.
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-------------~---~~~l~~GR~l~G~g~ 156 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-------------S---WYQLIVGRILTGLGV 156 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------------h---HHHHHHHHHHhccch
Confidence 445556778889999999999999999999988888777766654221 1 112233344444444
Q ss_pred cc---cchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 356 GP---LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHY--GVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 356 g~---~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~--g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
|. ..+.|.+|+.|++.||...+.......+|..++ .+.+....+. +|...+.+..+++++..+. .++.||+.
T Consensus 157 G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 157 GGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred hhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 43 467899999999999999999988888776666 5555544432 5666666667677766666 78889874
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=88.52 Aligned_cols=149 Identities=23% Similarity=0.299 Sum_probs=87.8
Q ss_pred HHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHH
Q psy13206 263 TFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLI 342 (478)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (478)
+..+.+.+ .+..+......+...+++++.|.++|.+|||..++.+.++..++.++.+... +...++
T Consensus 70 I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-------------~~~~~i 135 (599)
T PF06609_consen 70 INADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-------------NMNTFI 135 (599)
T ss_pred HHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-------------cHHHHH
Confidence 33334433 3334455556677788889999999999999999998888888776654211 011111
Q ss_pred HHHHHHHHHHhccc--ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q psy13206 343 SITCFAVIYSIGLG--PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVL 420 (478)
Q Consensus 343 ~~~~~~~~~~~g~g--~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~ 420 (478)
. -..+++.|.| .+....++|+.|.+.|+.+.++..........+++.+...+..+.+|.+.++++.+...+..+.
T Consensus 136 a---g~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 136 A---GMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred H---HHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 1 1222233333 3445568999999999887776654433333344444444444456777777776655544333
Q ss_pred -hheeecCC
Q psy13206 421 -VYFIIPES 428 (478)
Q Consensus 421 -~~~~~pEt 428 (478)
.+++.|.+
T Consensus 213 ~~~fY~PP~ 221 (599)
T PF06609_consen 213 IFFFYFPPP 221 (599)
T ss_pred HHHHhCCCc
Confidence 23344443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=82.57 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 276 ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 276 ~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
..+....++.++|.+..|++.||+|||++....++++.+++++.+... .. + ......+.++++.+..++|.
T Consensus 88 ~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~--~~--~-----~~~~~m~~L~~~R~~LGiGI 158 (538)
T KOG0252|consen 88 LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV--GT--T-----SPLGVMMTLCFFRFLLGIGI 158 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC--CC--C-----CCcchhhHHHHHHHHhhccc
Confidence 344556677889999999999999999999888888888877443221 11 0 11123456777888888877
Q ss_pred c---ccchhhhcccCCccccchhhHHH
Q psy13206 356 G---PLVPTLQGEFFPSNTRGLAGGVT 379 (478)
Q Consensus 356 g---~~~~~~~~El~p~~~Rg~~~g~~ 379 (478)
| |+..++++|....+.||+-.+..
T Consensus 159 GGDYPlSAtI~SE~an~~~RGa~iaav 185 (538)
T KOG0252|consen 159 GGDYPLSATIMSESANKKTRGAFIAAV 185 (538)
T ss_pred cCCCcchHHHhhhhhhhccccceeEEE
Confidence 6 67778999999999999766654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=82.71 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=102.3
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
++++++.+..++.-...+..++|++++|++.||+|-|+++..+++++.+.++...+...-..+.++=.+.|+..|+....
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~ 361 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQAS 361 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHH
Confidence 67889999999999999999999999999999999999999999999999988888877777888889999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhh
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYT 142 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~ 142 (478)
+.+|..+..|+++-++..+++...--....+++.
T Consensus 362 SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~ 395 (438)
T COG2270 362 SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPF 395 (438)
T ss_pred HHHHHHHhCCCccccceeehhhhhhhHHHHHHHH
Confidence 9999999999999999999888776666555544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-05 Score=79.95 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 276 ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 276 ~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
.......++..++.++.|.++||+|||+++..+.++.+++.++..... ..+ ++ .. +....+..+.|.
T Consensus 65 l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~-~a~---------~~-~~--ll~~r~l~G~g~ 131 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIM---------NY-TL--FLVGLFIIAAGL 131 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-hcC---------CH-HH--HHHHHHHHHHHH
Confidence 344445677788999999999999999999999888887765432111 111 11 11 111222222222
Q ss_pred c---ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13206 356 G---PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVI 397 (478)
Q Consensus 356 g---~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l 397 (478)
+ +....+..|..|.+.|....++.+....+|..+++.+.+.+
T Consensus 132 g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33445666877777777788888888888888888776544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.7e-06 Score=82.24 Aligned_cols=128 Identities=14% Similarity=-0.005 Sum_probs=93.8
Q ss_pred cccCcchhhHHHHHHH-HHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHH------hhhHHHHHHHHHHHhhhh
Q psy13206 30 IEMTSAESSWVVSIIE-LGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF------TKHVYVLYVVRFMQGLAM 102 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~-~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~------a~~~~~l~~~R~l~G~~~ 102 (478)
.+.++++.+++.+... .+.++|.++.|++.||+|+|+.+..+.++..+..+.... .++...+...-.+.+++.
T Consensus 238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (390)
T TIGR02718 238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT 317 (390)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH
Confidence 5778889999888775 577889999999999999999998877665333322221 133445566667778888
Q ss_pred hhhhhhhhhhhhhcccc-ccchhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHH
Q psy13206 103 GIVFTVAPMYIGEISGA-KCRGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSL 157 (478)
Q Consensus 103 g~~~~~~~~~~~E~~p~-~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~ 157 (478)
|...+....++.+..++ +++|...+..+....+|..+++.++.. .+++..+....
T Consensus 318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~ 377 (390)
T TIGR02718 318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGT 377 (390)
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 88888888888788776 899999999988888888887776532 34444544443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.3e-06 Score=82.16 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=84.3
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhccc-CchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV-GRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~-GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
.+.++.+.+++.+++.++.++++++.|++.||+ +||+.+..+.++..++.+...+.++..... .-.+.|++.|..++.
T Consensus 227 ~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~ 305 (355)
T TIGR00896 227 HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPL 305 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHH
Confidence 466788899999999999999999999999999 567777788888888777777665543332 457889999999998
Q ss_pred hhhhhhhcc-ccccchhhhHHHHHHHHHhHHHHh
Q psy13206 109 APMYIGEIS-GAKCRGALSTFFIGMLNTGILLEY 141 (478)
Q Consensus 109 ~~~~~~E~~-p~~~Rg~~~~~~~~~~~~G~~l~~ 141 (478)
....+.+.. +++++|...++.+....+|..+++
T Consensus 306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp 339 (355)
T TIGR00896 306 ALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGP 339 (355)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776544 456778877776655555544443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-06 Score=63.00 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=67.0
Q ss_pred cchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhH
Q psy13206 9 PSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHV 88 (478)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~ 88 (478)
.+|.+|.|.+ |..+|..+.+|+.|..++||.+|++...++.++..+++.+..+.++..++++++++.+++
T Consensus 11 yTplLP~M~~----------~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~ 80 (85)
T PF06779_consen 11 YTPLLPLMQA----------DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF 80 (85)
T ss_pred HHhHhHHHHH----------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 4678888876 578899999999999999999999999999999888999999999999999999999988
Q ss_pred HHHH
Q psy13206 89 YVLY 92 (478)
Q Consensus 89 ~~l~ 92 (478)
+...
T Consensus 81 ~~w~ 84 (85)
T PF06779_consen 81 WLWS 84 (85)
T ss_pred HHHh
Confidence 7653
|
Note that many members are hypothetical proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.3e-06 Score=82.55 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=87.5
Q ss_pred ccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhhhhhh
Q psy13206 31 EMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK--HVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 31 ~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~--~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+.++...++......++.++++++.+++.||+|+|+.+.++.++..++.++..+.+ +++.+++.-++.|+|.+...+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444344444445677889999999999999999999999998888877776654 6777888889999999999999
Q ss_pred hhhhhhhccccc-------cchhhhHHHHHHHHHhHHHHhh
Q psy13206 109 APMYIGEISGAK-------CRGALSTFFIGMLNTGILLEYT 142 (478)
Q Consensus 109 ~~~~~~E~~p~~-------~Rg~~~~~~~~~~~~G~~l~~~ 142 (478)
..++..|..|.+ ++|...+..+....+|..++..
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~ 380 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS 380 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence 999999988754 4588888877776666655443
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.1e-06 Score=78.36 Aligned_cols=123 Identities=16% Similarity=0.288 Sum_probs=89.2
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcc----cCchhHHHhhhHHHH-HHHHHHHHhhhH----------------
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDY----VGRKPCLLTTGPLYI-ISWLLVIFTKHV---------------- 88 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr----~GRr~~l~~~~~l~~-i~~~~~~~a~~~---------------- 88 (478)
+++.....+.+--.-.+...+-|++.|..+|| |||||.++.+..+.+ ++-++.+++.++
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 34444545555555667778889999999995 799999887766654 566677776553
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchh-hhHHHHHHHHHhHHHHhhcCCccchhhH
Q psy13206 89 -YVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGA-LSTFFIGMLNTGILLEYTVGPYVDYDTL 152 (478)
Q Consensus 89 -~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~-~~~~~~~~~~~G~~l~~~~g~~~~~~~~ 152 (478)
..++++=-+.=++.-.....+-++..+.+.+.++-+ ++++...+..+|..+++.+|++.+|+..
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~~ 207 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYKI 207 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceEE
Confidence 233333334444555667788899999887666665 8999999999999999999998887643
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.8e-06 Score=68.06 Aligned_cols=117 Identities=14% Similarity=0.230 Sum_probs=90.9
Q ss_pred cccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Q psy13206 22 DMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLA 101 (478)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~ 101 (478)
+..+++..-++++.+--.-.++.+....+.+++.+.+.+++|.|+.++++.+.+.+-.+.. +-++.+.++.+-.+.|+|
T Consensus 24 ~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~ 102 (156)
T PF05978_consen 24 HSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFG 102 (156)
T ss_pred HHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhh
Confidence 3344444445555544445577777788888999999999999999999999998665543 567889999999999999
Q ss_pred hhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHH
Q psy13206 102 MGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILL 139 (478)
Q Consensus 102 ~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l 139 (478)
.+..++....|+.|...++.|++..++.-.....+.+.
T Consensus 103 ~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~ 140 (156)
T PF05978_consen 103 AALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIF 140 (156)
T ss_pred hHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776554444444443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=72.54 Aligned_cols=109 Identities=16% Similarity=0.214 Sum_probs=92.6
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh-------hhHHHHHHHHHHHhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT-------KHVYVLYVVRFMQGLA 101 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a-------~~~~~l~~~R~l~G~~ 101 (478)
.+++|.+|...+.+.--+|..+| ++.|.+.||+|.|.++.++.+...+|-.+.-++ .++|.+++.-++.|.+
T Consensus 31 ~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s 109 (250)
T PF06813_consen 31 RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNS 109 (250)
T ss_pred HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHccc
Confidence 47889999999999999999886 889999999999999999999999888777554 3578999999999998
Q ss_pred hhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHH
Q psy13206 102 MGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILL 139 (478)
Q Consensus 102 ~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l 139 (478)
.+...+++.+...+.+| ++||.+.++.-....++..+
T Consensus 110 ~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai 146 (250)
T PF06813_consen 110 SCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAI 146 (250)
T ss_pred HHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHH
Confidence 77777777777778887 58999999888777766544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-08 Score=100.91 Aligned_cols=137 Identities=19% Similarity=0.279 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc---
Q psy13206 279 LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL--- 355 (478)
Q Consensus 279 ~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--- 355 (478)
....++.++|+++.|.++||+|||+.++.+.++..++.++.+.. +.. .++. .+....++.+++.
T Consensus 53 ~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~----~~~------~~~~---~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 53 SSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA----PSY------NNFW---MLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHhhhccccccccccccccccccccccccccccccccccccc----ccc------cccc---cccccccccccccccc
Confidence 34556677899999999999999999988888777766554321 100 0111 1222223333333
Q ss_pred cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 356 GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH---YGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 356 g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~---~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
.+..+.+..|..|++.|+....+.+....+|..++..+...+... .+|...+.+.+++.+ ..++...++||+.
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l-~~~~~~~~~pESP 195 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSL-LVLLLRFFLPESP 195 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 345678999999999999999988877777765554443222111 124333333333333 3344557889984
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=76.30 Aligned_cols=110 Identities=11% Similarity=0.032 Sum_probs=84.6
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
..+.++.+.++..+.+..+..+|.++.+++.||+|+|+.+.++.++..++.++....++...+ ..=++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999988888888777666655543322 3445889999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHh
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEY 141 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~ 141 (478)
..+...+..|++ .+...++. .+..+|..+.+
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P 281 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVP 281 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHH
Confidence 999998888764 34445543 33345544444
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.1e-05 Score=79.83 Aligned_cols=107 Identities=11% Similarity=0.209 Sum_probs=81.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 34 SAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF-----TKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 34 ~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~-----a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+...+++.++..++.+++.+++++++||+|||+.+.++.++.+++.+...+ ..+.+.+++.=++.|++.+...+.
T Consensus 265 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~ 344 (473)
T PRK10429 265 ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVL 344 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777889999999999999999999999888877766655432 345677777888999999999999
Q ss_pred hhhhhhhccc-------cccchhhhHHHHHHHHHhHHHH
Q psy13206 109 APMYIGEISG-------AKCRGALSTFFIGMLNTGILLE 140 (478)
Q Consensus 109 ~~~~~~E~~p-------~~~Rg~~~~~~~~~~~~G~~l~ 140 (478)
..+++.|..+ +|..|...+......-+|..++
T Consensus 345 ~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~ 383 (473)
T PRK10429 345 QVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFA 383 (473)
T ss_pred HHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHH
Confidence 9999999966 3444556666665555554443
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-05 Score=75.30 Aligned_cols=139 Identities=14% Similarity=0.178 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc-
Q psy13206 278 TLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG- 356 (478)
Q Consensus 278 ~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g- 356 (478)
....++.+++...+.|.+.||+|+|..++++++.+...+++.+.. +.+ + .++.....-+.|..
T Consensus 112 FaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg----~sy--------~----~l~vAR~LQgvgsA~ 175 (464)
T KOG3764|consen 112 FASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG----NSY--------P----MLFVARSLQGVGSAF 175 (464)
T ss_pred HHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc----chh--------H----HHHHHHHHhhhhHHH
Confidence 334567788889999999999999999999988888887765421 111 1 12222333333221
Q ss_pred --ccchhhhcccCCccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCCCC
Q psy13206 357 --PLVPTLQGEFFPSNT-RGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKT 432 (478)
Q Consensus 357 --~~~~~~~~El~p~~~-Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~ 432 (478)
..--++.++.||.+. |++++|+.-.+..+|-.++|..-+.+.+..|.+.+|.+++..+++-+.+-++.++.++..+
T Consensus 176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 122346778888776 6999999999999999999999999999999999999999999998888888887765444
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00042 Score=72.22 Aligned_cols=137 Identities=15% Similarity=0.209 Sum_probs=99.8
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhccc-CchhHHHhhhHHHHHHHHHHHHhhh--------HHHHHHHHHHHhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV-GRKPCLLTTGPLYIISWLLVIFTKH--------VYVLYVVRFMQGL 100 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~-GRr~~l~~~~~l~~i~~~~~~~a~~--------~~~l~~~R~l~G~ 100 (478)
++.+..+...+...|..-.-+..++.|.++|++ ||++++.++.+++.++.++.+++.. ...++++=.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 566777777777788777788899999999987 9999999999999999888777521 2346678888999
Q ss_pred hhhhhhhhhhhhhhhccccccc---hhhhHHHHHHHHHhHHHHhhcCCcc-----------chhhHHHHHHHHHHHHHHh
Q psy13206 101 AMGIVFTVAPMYIGEISGAKCR---GALSTFFIGMLNTGILLEYTVGPYV-----------DYDTLAYVSLVIPVVFLMT 166 (478)
Q Consensus 101 ~~g~~~~~~~~~~~E~~p~~~R---g~~~~~~~~~~~~G~~l~~~~g~~~-----------~~~~~~~~~~~~~~~~~~~ 166 (478)
|.|+.-+...+...|-.+++++ -....++..+.++|.+++..+.+.+ +|+..+.+..+..++.++.
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876543 3444555666777777665553322 3555555554444444333
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=4e-05 Score=76.81 Aligned_cols=142 Identities=18% Similarity=0.264 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 276 ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 276 ~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
....++.++.+++.++.+.+.||++-.+.+..+.+..++..++... .++ ...++.+-++..++-.+.
T Consensus 85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~----~~s---------~~~~ialr~llGl~es~~ 151 (495)
T KOG2533|consen 85 VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA----VHS---------FPGLIALRFLLGLFESGG 151 (495)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----Hhh---------hHHHHHHHHHHHHHhccc
Confidence 3455667788899999999999999655555544444433322211 111 111223333333333345
Q ss_pred cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH------HhcccchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 356 GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVIC------DHYGVYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 356 g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~------~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
.|....+.+-.|.++.||+-+|+-++...+|+.+++.+...+. ...||.+.|++-++.+++.++++++++|+..
T Consensus 152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 6777789999999999999999999999999888888877753 2457778899999999999999999999765
Q ss_pred C
Q psy13206 430 G 430 (478)
Q Consensus 430 ~ 430 (478)
.
T Consensus 232 ~ 232 (495)
T KOG2533|consen 232 S 232 (495)
T ss_pred h
Confidence 4
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-05 Score=80.80 Aligned_cols=139 Identities=17% Similarity=0.294 Sum_probs=116.8
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccC--chhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVG--RKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVF 106 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~G--Rr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~ 106 (478)
....+..+.+.+.|+..+..++|.++.|+++|+.. ++....++++...++.+.+.++++++.++..-.+.|+..|...
T Consensus 327 ~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~ 406 (509)
T KOG2504|consen 327 SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFS 406 (509)
T ss_pred hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999 5667788888888899999999999999999999999999999
Q ss_pred hhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCcc-----chhhHHHHHHHHHHHHHHhh
Q psy13206 107 TVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV-----DYDTLAYVSLVIPVVFLMTF 167 (478)
Q Consensus 107 ~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~ 167 (478)
......+.|..+.++-..+.++......++.++++.++..+ +|...++.+....++....+
T Consensus 407 ~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~ 472 (509)
T KOG2504|consen 407 SLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL 472 (509)
T ss_pred HHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence 99999999999999999999999999888888877665321 35556665555544444333
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.2e-06 Score=76.87 Aligned_cols=95 Identities=21% Similarity=0.262 Sum_probs=80.2
Q ss_pred HHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhH----HHHHHHHHHHhhhhhhhhhhhhhhhhhcccccc
Q psy13206 46 LGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHV----YVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKC 121 (478)
Q Consensus 46 ~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~----~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~ 121 (478)
+.-.-|.++.+.+.||+|||+.+-.+.+++++.+++.-.+.+- ..++.+|++ ..+.+.++++|.-|..|..-
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPTav 467 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPTAV 467 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccchhh
Confidence 4445688999999999999999999999999999888777543 355556655 57778899999999999999
Q ss_pred chhhhHHHHHHHHHhHHHHhhcC
Q psy13206 122 RGALSTFFIGMLNTGILLEYTVG 144 (478)
Q Consensus 122 Rg~~~~~~~~~~~~G~~l~~~~g 144 (478)
|+...+....+.-+|-++.++++
T Consensus 468 RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 468 RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred hhcchhhhhhHHhhhhhhhhHHH
Confidence 99999999999888888887776
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.09 E-value=1e-05 Score=81.67 Aligned_cols=117 Identities=12% Similarity=0.118 Sum_probs=100.6
Q ss_pred cccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHH----------hhhHHHHHHHHHH
Q psy13206 28 TYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF----------TKHVYVLYVVRFM 97 (478)
Q Consensus 28 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~----------a~~~~~l~~~R~l 97 (478)
.+.+.++.+.|.+.+...++.++|....+++.+|++.|+++.++.++.+++.+.... .++.+.+...-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 367889999999999999999999999999999999999999999999887755421 1344456667789
Q ss_pred HhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC
Q psy13206 98 QGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG 144 (478)
Q Consensus 98 ~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g 144 (478)
.+++.|..+....+++.|.+|++++|...++.....++|..++..+|
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~g 407 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLG 407 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888887777654
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.5e-05 Score=76.70 Aligned_cols=106 Identities=9% Similarity=0.153 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy13206 37 SSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF--TKHVYVLYVVRFMQGLAMGIVFTVAPMYIG 114 (478)
Q Consensus 37 ~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~--a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 114 (478)
.+.+.+...+..+++.+++++++||+|+|+.+..+.++..+..+...+ .++++.+.+.-++.|++.++..+...++++
T Consensus 266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~a 345 (444)
T PRK09669 266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFS 345 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677888899999999999999999999887766654443333 357778888999999999999999999999
Q ss_pred hccc-------cccchhhhHHHHHHHHHhHHHHhh
Q psy13206 115 EISG-------AKCRGALSTFFIGMLNTGILLEYT 142 (478)
Q Consensus 115 E~~p-------~~~Rg~~~~~~~~~~~~G~~l~~~ 142 (478)
|..+ ++..|...+.......+|..+++.
T Consensus 346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~ 380 (444)
T PRK09669 346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGA 380 (444)
T ss_pred hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHH
Confidence 9886 233455556665555555544433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.6e-05 Score=79.60 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=90.0
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy13206 35 AESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK--HVYVLYVVRFMQGLAMGIVFTVAPMY 112 (478)
Q Consensus 35 ~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~--~~~~l~~~R~l~G~~~g~~~~~~~~~ 112 (478)
...+++..+..++.+++.+++++++||+|+|+++..+.++.+++.++..+.+ |.+.+++.-++.|++.|...+....+
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5678888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred hhhcccc-------ccchhhhHHHHHHHHHhHHH
Q psy13206 113 IGEISGA-------KCRGALSTFFIGMLNTGILL 139 (478)
Q Consensus 113 ~~E~~p~-------~~Rg~~~~~~~~~~~~G~~l 139 (478)
++|..+. ++.|...+........|..+
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~l 373 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGL 373 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHH
Confidence 9999874 33455555555555555443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.3e-05 Score=74.66 Aligned_cols=122 Identities=20% Similarity=0.363 Sum_probs=83.3
Q ss_pred HHhhhhhHhhhh-cCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc---ccchhh
Q psy13206 287 LSTFPTAFLVDR-TGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG---PLVPTL 362 (478)
Q Consensus 287 ~~~~~~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g---~~~~~~ 362 (478)
...+++|+++|| +|+|+.+..+.++.+++.++++..... .. ....+.+. .+ ..|.| |+...+
T Consensus 76 ~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~---------~~-~gl~i~L~--~I--~iG~Gl~K~NiS~l 141 (498)
T COG3104 76 LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVS---------GP-GGLYIGLA--LI--IVGTGLFKPNISSL 141 (498)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc---------cc-cHHHHHHH--HH--HhccccccccHHHH
Confidence 467789999999 699999999988888887776532100 00 01111211 11 23333 567778
Q ss_pred hcccCCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhe
Q psy13206 363 QGEFFPSNT--RGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYF 423 (478)
Q Consensus 363 ~~El~p~~~--Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~ 423 (478)
.+|++|+++ |-.+.++.++..++|+++.|.+.+++.++.|+...|-..++.+. .+++.+.
T Consensus 142 lg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~-~gl~~f~ 203 (498)
T COG3104 142 LGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMI-IGLVIFL 203 (498)
T ss_pred HHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-HHHHHHH
Confidence 889885543 67778888888999999999999999999998777766665444 4444443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.7e-05 Score=73.76 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=87.1
Q ss_pred ccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhhhhhh
Q psy13206 31 EMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK--HVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 31 ~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~--~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+-+..+..+.......+.+++.+++.++.+|+|+|+++.++.++.+++.++.-+.+ +.+.+++..++.|+|.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 33445556777788888888899999999999999999999999999999998886 7899999999999999999999
Q ss_pred hhhhhhhccc-------cccchhhhHHHHHHHHHhHHH
Q psy13206 109 APMYIGEISG-------AKCRGALSTFFIGMLNTGILL 139 (478)
Q Consensus 109 ~~~~~~E~~p-------~~~Rg~~~~~~~~~~~~G~~l 139 (478)
.++++.|... .|.-|...+......=+|..+
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~al 385 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLAL 385 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence 9999988775 233355445444444444433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00014 Score=65.96 Aligned_cols=138 Identities=14% Similarity=0.058 Sum_probs=77.8
Q ss_pred hHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccc
Q psy13206 254 SAVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDL 333 (478)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 333 (478)
+.+..|.++.-.+-+.+..+.+..+..-.++..+ +++.|.+.|+.|.+.+++++.+...++...+-... ... .
T Consensus 19 Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~--~~~----i 91 (250)
T PF06813_consen 19 YTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAV--SGR----I 91 (250)
T ss_pred cchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--hCc----c
Confidence 4455577766554443322223333333444444 57889999999999998888777777665443221 110 1
Q ss_pred cccchHHHHHHHHHHHHHHhccc-ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13206 334 SKFNWIPLISITCFAVIYSIGLG-PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH 400 (478)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~g-~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~ 400 (478)
.. .....+.+.++....+.... ........+.|| +.||++.|+.-....+++.+...++..+.+.
T Consensus 92 ~~-~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 92 PS-LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred Cc-cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 10 11122222222211111110 111122347887 5799999999999999999888887777655
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.023 Score=56.82 Aligned_cols=112 Identities=10% Similarity=0.072 Sum_probs=82.6
Q ss_pred CcchhhHHHHHHHHHHHhh-hhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh--hh----------------------
Q psy13206 33 TSAESSWVVSIIELGNLVT-PIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT--KH---------------------- 87 (478)
Q Consensus 33 ~~~~~~~~~s~~~~g~~ig-~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a--~~---------------------- 87 (478)
..+...|+-+...+..++. .++.+++++|++|++.+.+....+...-++.++. ++
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3467889888887777777 8999999999999999988777777655555544 11
Q ss_pred -------HHHHHHHHHHHhhhhhhhhh-hhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC
Q psy13206 88 -------VYVLYVVRFMQGLAMGIVFT-VAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG 144 (478)
Q Consensus 88 -------~~~l~~~R~l~G~~~g~~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g 144 (478)
.|...++=...-+-...... .-+.++.|.+..+|-.|..++...+.++|.++++.+.
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~ 185 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI 185 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333344444444554 7788899999999999999999999999988876553
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00053 Score=69.17 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy13206 36 ESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK--HVYVLYVVRFMQGLAMGIVFTVAPMYI 113 (478)
Q Consensus 36 ~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~--~~~~l~~~R~l~G~~~g~~~~~~~~~~ 113 (478)
..+++.+.+.++.++|.+++++++||+|+|+.+..+..+..+..++..+.+ +...+++.=++.|++.++..+....++
T Consensus 264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ 343 (460)
T PRK11462 264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMM 343 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788889999999999999999999988765555544444433332 233344555677888877777777787
Q ss_pred hhccc
Q psy13206 114 GEISG 118 (478)
Q Consensus 114 ~E~~p 118 (478)
.|...
T Consensus 344 ad~~d 348 (460)
T PRK11462 344 SDTVD 348 (460)
T ss_pred HHhHh
Confidence 77666
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00027 Score=70.36 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=95.6
Q ss_pred HHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchh
Q psy13206 282 GILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPT 361 (478)
Q Consensus 282 ~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~ 361 (478)
++..++.+...|.++||+|||..+....+.+.+..+++.... |...+.....+.+ ...-....+
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--------------~~~~~~~~l~g~~--~~~~s~~~a 135 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--------------YWFFLLLGLSGGF--SAIFSVGFA 135 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--------------HHHhhhcccccch--hhhhhhhhh
Confidence 556677788889999999999988777666555443322110 1000000000000 011123456
Q ss_pred hhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCCCCHH
Q psy13206 362 LQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFA 434 (478)
Q Consensus 362 ~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~~~ 434 (478)
++++....+.|....|+.+..-+.+..++|...+.+....+....+.+-.+..++..++..+++||+..++.+
T Consensus 136 ~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 136 YVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred heeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 8899999999999999999999999999999999998888877778777777777778888899998765543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0005 Score=67.71 Aligned_cols=113 Identities=16% Similarity=0.267 Sum_probs=88.4
Q ss_pred CcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh-hhHHHH----HHHHHHHhhhhhhhhh
Q psy13206 33 TSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT-KHVYVL----YVVRFMQGLAMGIVFT 107 (478)
Q Consensus 33 ~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a-~~~~~l----~~~R~l~G~~~g~~~~ 107 (478)
+....+.+.++-.++=+.--...+++..|+|-|+++.++.+.+++=..+.+.. ++.+.. ++.-.++|+..|....
T Consensus 241 ~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~ 320 (400)
T PF03825_consen 241 SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHA 320 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33444555555556666677788999999999999999999999988888887 454433 3345679999999999
Q ss_pred hhhhhhhhccccccchhhhHHHHHH-HHHhHHHHhhcCC
Q psy13206 108 VAPMYIGEISGAKCRGALSTFFIGM-LNTGILLEYTVGP 145 (478)
Q Consensus 108 ~~~~~~~E~~p~~~Rg~~~~~~~~~-~~~G~~l~~~~g~ 145 (478)
++..|+.|.+|++.|+...++.... ..+|..++..++-
T Consensus 321 a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG 359 (400)
T PF03825_consen 321 ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGG 359 (400)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999998877654 5677777766653
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0028 Score=60.53 Aligned_cols=115 Identities=8% Similarity=0.030 Sum_probs=77.8
Q ss_pred chhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHh
Q psy13206 274 PDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSI 353 (478)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (478)
+.........+.++.+++.+++++|+|+|+-++.+..+.++++.+..-.... ..+ .......|...++.
T Consensus 50 a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~----------~~y-~~FL~~lFila~Gi 118 (422)
T COG0738 50 ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS----------KSY-GFFLVALFILASGI 118 (422)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh----------hhH-HHHHHHHHHHHhhh
Confidence 3334444566777899999999999999999999999988887664211110 011 11122222333332
Q ss_pred cc-cccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13206 354 GL-GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD 399 (478)
Q Consensus 354 g~-g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~ 399 (478)
+. -.....+++.+.|++....-..+...+..+|++++|.+.+.+..
T Consensus 119 ~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 119 GLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 22 12345678888888888888899999999999999999887665
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0049 Score=57.48 Aligned_cols=148 Identities=19% Similarity=0.303 Sum_probs=110.6
Q ss_pred ccccCcchhh-HHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q psy13206 29 YIEMTSAESS-WVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFT 107 (478)
Q Consensus 29 ~~~~~~~~~~-~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~ 107 (478)
+.|++..|.. =+.-+..-++.++-.+.=.+.|..--|+++++-.+-..+.+.+..+.++.+.+-+..++.|...+.+ .
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaE-I 113 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAE-I 113 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHH-H
Confidence 5566666542 1233344556777788888999999999999999999999999999999999999999999997776 4
Q ss_pred hhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC------ccchhhHHHHHHHHHHHHHHhhccccCChHHH
Q psy13206 108 VAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP------YVDYDTLAYVSLVIPVVFLMTFIWMPESPYFL 177 (478)
Q Consensus 108 ~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l 177 (478)
+-++|+-+..+++++-++.+..-.....|-.++..++- ..++..+..+...-..+..+.-.++|--+|-+
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl 189 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSL 189 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhh
Confidence 56788888899999999999888777777666665553 24556666666655555555556666555443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00049 Score=67.00 Aligned_cols=107 Identities=16% Similarity=0.213 Sum_probs=88.3
Q ss_pred CcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy13206 33 TSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMY 112 (478)
Q Consensus 33 ~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~ 112 (478)
++...|.+.|+--+.=++.-.+..++.+|+|.|+.++++..++++=..++++++|.+.+.+.+.+.|+..+.......-|
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457888888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccchhhhHHH-HHHHHHhHHH
Q psy13206 113 IGEISGAKCRGALSTFF-IGMLNTGILL 139 (478)
Q Consensus 113 ~~E~~p~~~Rg~~~~~~-~~~~~~G~~l 139 (478)
+++.+|+|......... +....+|..+
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i 364 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIII 364 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHH
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876555443 3444455443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00021 Score=70.20 Aligned_cols=137 Identities=12% Similarity=0.144 Sum_probs=106.5
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVA 109 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~ 109 (478)
.+-.+...|-....-..|-+..-++.+++..++|+-+++..+.....+=-+..+..+|.|+.+-..+++|+..+..+.+.
T Consensus 401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~ 480 (618)
T KOG3762|consen 401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI 480 (618)
T ss_pred cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence 33445556766666677888888888999999999999999999998888888889999999999999999999999999
Q ss_pred hhhhhhccccccchhhhHHHHHH-HHHhHHHHhhcC----CccchhhHHHHHHHHHHHHHHh
Q psy13206 110 PMYIGEISGAKCRGALSTFFIGM-LNTGILLEYTVG----PYVDYDTLAYVSLVIPVVFLMT 166 (478)
Q Consensus 110 ~~~~~E~~p~~~Rg~~~~~~~~~-~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~ 166 (478)
.+|++..+||+.|..+.++.++. ..+|--++.++| ...+-+..+.+..+..++.++.
T Consensus 481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 99999999999999888877653 344444444444 3445566666555544444433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.044 Score=53.32 Aligned_cols=128 Identities=18% Similarity=0.188 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhcc
Q psy13206 38 SWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEIS 117 (478)
Q Consensus 38 ~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~ 117 (478)
+.+.-+--+...+-.+.+.++.+|+.-+.=..++.+++.++-++.++++|.+.=+++=.+.+++.|..=..-..+.. ..
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 33444444556667777888888887666567777888899999999999988888888888887776666666544 44
Q ss_pred ccccchhhhHHHHHHHHHhHHHHhh----cCC-ccchhhHHHHHHHHHHHHHHhhccc
Q psy13206 118 GAKCRGALSTFFIGMLNTGILLEYT----VGP-YVDYDTLAYVSLVIPVVFLMTFIWM 170 (478)
Q Consensus 118 p~~~Rg~~~~~~~~~~~~G~~l~~~----~g~-~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (478)
|+.. .+.+..+...+-++++. +.. -++-|........+|++..+.++++
T Consensus 141 ~~~~----l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 141 GKSS----LSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred Cccc----cccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5432 22222222222222211 111 1233555555666777776665554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00029 Score=51.24 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=42.5
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHH
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLY 75 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~ 75 (478)
+.++|+.|.|.+.++..+-..++++++|.++||+||++.......++
T Consensus 29 ~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 29 QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 57899999999999999999999999999999999999887665544
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0091 Score=53.71 Aligned_cols=69 Identities=28% Similarity=0.390 Sum_probs=53.4
Q ss_pred HHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhh-hhhcc
Q psy13206 48 NLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMY-IGEIS 117 (478)
Q Consensus 48 ~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~-~~E~~ 117 (478)
..+...+.|.++|+-|||+..+.-.+.++++++ +-.++.|-.++++|.+-|++.+-.+..--.+ +.|.-
T Consensus 85 smLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 85 SMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 344455667899999999998877777776554 3557889999999999999998888776665 46654
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0015 Score=59.17 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=88.4
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHH-HHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYII-SWLLVIFTKHVYVLYVVRFMQGLAMGIVFT 107 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i-~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~ 107 (478)
.+++|+.+.+-+.|..+.-.++.++++|.+.|++||+-..+.+.-+..+ +-.+..| +++.=.++-.++|++-.....
T Consensus 294 rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAc 371 (459)
T KOG4686|consen 294 RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLAC 371 (459)
T ss_pred hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHH
Confidence 4678899999999998888899999999999999999987766555443 3233333 233344566778888666656
Q ss_pred hhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC
Q psy13206 108 VAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP 145 (478)
Q Consensus 108 ~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~ 145 (478)
..+-.+.-..|.++-|.+.++.+..+++|..+.+++..
T Consensus 372 slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag 409 (459)
T KOG4686|consen 372 SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAG 409 (459)
T ss_pred HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhh
Confidence 56777888889999999999999999999877666543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.03 Score=53.05 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=25.3
Q ss_pred HHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHH
Q psy13206 285 VFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLI 318 (478)
Q Consensus 285 ~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~ 318 (478)
.++...+.|.++||+|||+..+..+++-++.++.
T Consensus 82 s~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 82 SAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 3455566788999999999887777776666553
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0026 Score=62.98 Aligned_cols=140 Identities=13% Similarity=0.100 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhhhhHhhhhcCC-chhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccc
Q psy13206 279 LLLGILVFLSTFPTAFLVDRTGR-RPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGP 357 (478)
Q Consensus 279 ~~~~~~~~~~~~~~g~l~Dr~GR-r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 357 (478)
....++.+++++..|+...|.+. |+.++.|++++.++.++-....+.. .++ ...++...++.++|.+.
T Consensus 78 aa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~---------~~~--~y~mL~~R~l~Gvg~~n 146 (488)
T KOG2325|consen 78 AASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP---------NGV--KYLMLVARILTGVGVGN 146 (488)
T ss_pred HHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc---------cch--HHHHHHHHHHcCcCccc
Confidence 33556677888888999999885 5566777777777776642222211 111 12233345556666554
Q ss_pred --cchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh------------ccc-chHHHHHHHHHHHHHHHhh
Q psy13206 358 --LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH------------YGV-YLNFYIYSLGCIICGVLVY 422 (478)
Q Consensus 358 --~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~------------~g~-~~~~~~~~~~~~l~~~~~~ 422 (478)
..-.|.+.....++|.++++.......+|..++|.+-..+... +.. ..+-++.++..++..++.+
T Consensus 147 ~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~ 226 (488)
T KOG2325|consen 147 FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL 226 (488)
T ss_pred HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence 3456888888888899888888776666665555543332211 011 1345666767777777777
Q ss_pred eeecCCC
Q psy13206 423 FIIPESK 429 (478)
Q Consensus 423 ~~~pEt~ 429 (478)
++.+|..
T Consensus 227 ~~f~E~~ 233 (488)
T KOG2325|consen 227 FFFKEVY 233 (488)
T ss_pred hheeecc
Confidence 7777753
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0067 Score=57.17 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=85.2
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcc-cCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY-VGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFT 107 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr-~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~ 107 (478)
|.+.|+.+.|++.|...+..+..++....+++| -.+|+..+.....+.++.+.+.+.+.-..+.- =+++|+|.|+.++
T Consensus 237 ~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~ 315 (395)
T COG2807 237 DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFP 315 (395)
T ss_pred HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHH
Confidence 457899999999999999999999999999995 46777778888888888888878765433333 3999999999999
Q ss_pred hhhhhhhhccccccchhhhHHHHHHHHHhHHHHh
Q psy13206 108 VAPMYIGEISGAKCRGALSTFFIGMLNTGILLEY 141 (478)
Q Consensus 108 ~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~ 141 (478)
.+.+++..-++..++. ..+....+.+|.+++.
T Consensus 316 laL~li~~rs~~a~~A--a~LSgmaQg~GYllAa 347 (395)
T COG2807 316 LALTLILLRSSDAAIA--AALSGMAQGVGYLLAA 347 (395)
T ss_pred HHHHHHHhhcCChHHH--HHHHHHhhhhhHHHHh
Confidence 9999998877665543 2233445666666553
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.011 Score=57.48 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=75.0
Q ss_pred CchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHH
Q psy13206 273 TPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYS 352 (478)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (478)
.....+.+..++.++.++++.|+.||+|-|...+++..+.+++..+=.+.. .+ . ..+..+-++... +-..+
T Consensus 80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss--~p-~---v~~~f~~~l~~~---Gq~ia 150 (480)
T KOG2563|consen 80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISS--LP-F---VPPLFRRPLTHT---GQSIA 150 (480)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc--Cc-c---ccccchhhhhHH---hHHHH
Confidence 345666777788888999999999999999999888888777765532211 11 0 001112111111 11111
Q ss_pred hcccc----cchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13206 353 IGLGP----LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHY 401 (478)
Q Consensus 353 ~g~g~----~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~ 401 (478)
....+ ++.=+..-+||+++|.++..++.+.+-+|..++-.+-+.+..+.
T Consensus 151 a~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 151 AAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 11111 12234567899999999999999988888887766666665543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0077 Score=57.98 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=94.7
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhc-ccCchhHHHhhhHHHHHHHHHH---HHhhhHHHHHHHHHHHhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVD-YVGRKPCLLTTGPLYIISWLLV---IFTKHVYVLYVVRFMQGLAMGI 104 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~D-r~GRr~~l~~~~~l~~i~~~~~---~~a~~~~~l~~~R~l~G~~~g~ 104 (478)
-++++..|..-+++..-.|..+|-...|++.. |.+.|+.-.+++....++-.+. +...+.+.+...=++.|++.|.
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~ 317 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL 317 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence 56889999999999999999999999998887 6777777777777777665554 4446789999999999999999
Q ss_pred hhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhh
Q psy13206 105 VFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYT 142 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~ 142 (478)
....+.+.+.+.+++++-|..++.+...+.+..-++..
T Consensus 318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~ 355 (403)
T PF03209_consen 318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTF 355 (403)
T ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887776665544443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.63 Score=46.13 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccc---
Q psy13206 281 LGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGP--- 357 (478)
Q Consensus 281 ~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~--- 357 (478)
-++..+.+++...++.+|+|-.+.=+.+......++.+... ....+.. +........+......-=.|.+.
T Consensus 302 gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~-~~~~~~~-----~~~~~s~~~l~~gi~~SR~GLW~fDL 375 (432)
T PF06963_consen 302 GAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVV-SFWAPGS-----PFSSISAYLLLGGIALSRIGLWSFDL 375 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH-HHhcCCC-----CchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 34556678888999999999888766666655554433322 2221100 00111122222211222234332
Q ss_pred cchhhhcccCCccccchhhHHHHHHHHHHHHHH
Q psy13206 358 LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLV 390 (478)
Q Consensus 358 ~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~ 390 (478)
...-+..|..|.+.||+..|+-+...++...+.
T Consensus 376 ~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 376 AVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred HHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 234477899999999999999988887776543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.12 Score=51.47 Aligned_cols=36 Identities=6% Similarity=-0.038 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccch
Q psy13206 87 HVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRG 123 (478)
Q Consensus 87 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg 123 (478)
.++..++.=++.|++.|........+.+ .+|+++-+
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~~~ 140 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTYSS 140 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHHHH
Confidence 5777777788999998888888888877 45565544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.051 Score=57.00 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=66.1
Q ss_pred HHHhhhhhHhhhh-cCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc---ccchh
Q psy13206 286 FLSTFPTAFLVDR-TGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG---PLVPT 361 (478)
Q Consensus 286 ~~~~~~~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g---~~~~~ 361 (478)
-+..+++|+++|+ +||++.++.+.++..++.+++..... . ... .........+. ..+.+.|.| |+..+
T Consensus 37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~--~-~~~---~~~~~~~~l~g--LaLia~G~GgiKp~vsa 108 (654)
T TIGR00926 37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI--P-SSG---HPLHDLLDLLG--LALIALGTGGIKPCVSA 108 (654)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC--c-ccc---cchHHHHHHHH--HHHHHhhccccccCchh
Confidence 3566778999996 79999888887776666655442110 0 000 00001111111 122233444 45556
Q ss_pred hhcccCCcc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13206 362 LQGEFFPSN---TRGLAGGVTTITLTVISFLVMKMYQVICDHY 401 (478)
Q Consensus 362 ~~~El~p~~---~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~ 401 (478)
...|.++.+ .|-....+....+++|+++++.+.+++.+..
T Consensus 109 f~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 109 FGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred hhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777643 3667888889999999999999999887554
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.32 Score=49.06 Aligned_cols=111 Identities=12% Similarity=0.075 Sum_probs=70.0
Q ss_pred CcchhhHHHHHHH-HHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh--hh----------------------
Q psy13206 33 TSAESSWVVSIIE-LGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT--KH---------------------- 87 (478)
Q Consensus 33 ~~~~~~~~~s~~~-~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a--~~---------------------- 87 (478)
.++...++=...- -+.++......+++||++|.+++.+....+...=.+.++. |+
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 4444555544333 3455667778999999999999987777766544444442 21
Q ss_pred -------HHHHHHHHHHHhhhhhhhhh-hhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhc
Q psy13206 88 -------VYVLYVVRFMQGLAMGIVFT-VAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTV 143 (478)
Q Consensus 88 -------~~~l~~~R~l~G~~~g~~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~ 143 (478)
.|...++=.+.-+-.....+ .-+.+..|.++.++-.|...+...+.++|.+++..+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~ 199 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQL 199 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222223333 347788999999999999999999988888776544
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0094 Score=43.34 Aligned_cols=56 Identities=20% Similarity=0.430 Sum_probs=39.7
Q ss_pred hhhhhHHHHhHHHHHHhcCCCCCCchhhHHHH---HHHHHHHhhhhhHhhhhcCCchhHHHh
Q psy13206 250 ISGMSAVLPYASSTFARTEGSLITPDECTLLL---GILVFLSTFPTAFLVDRTGRRPLLLVS 308 (478)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~Dr~GRr~~l~~~ 308 (478)
+.+...+.||.+..+.+.+. ++.+.+.+. -+..+++.++.|.++||.+|++..+..
T Consensus 13 f~~~g~~~Pfl~~~~~~~Gl---~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~ 71 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQLGL---SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG 71 (77)
T ss_pred HHHHHHHHhhhhHhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence 44556678888887776544 444444444 455668889999999999999876554
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.011 Score=58.48 Aligned_cols=129 Identities=15% Similarity=0.139 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccccc
Q psy13206 279 LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPL 358 (478)
Q Consensus 279 ~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~ 358 (478)
.+.-.+.++.-+..+++.+|+||-+++..++.+.++=.+..+ .+. +.|..+-+=++-++.++ ..+..
T Consensus 413 a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S---~L~---------n~W~vLPieilqgit~a-liWaa 479 (618)
T KOG3762|consen 413 ALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS---YLQ---------NPWMVLPIEILQGITHA-LIWAA 479 (618)
T ss_pred hhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH---Hhc---------CchheeeHHHHHHHHHH-HHHHH
Confidence 333445556666778999999999999887666655443322 111 12322211122222222 12234
Q ss_pred chhhhcccCCccccchhhHHHHHH-HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q psy13206 359 VPTLQGEFFPSNTRGLAGGVTTIT-LTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVL 420 (478)
Q Consensus 359 ~~~~~~El~p~~~Rg~~~g~~~~~-~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~ 420 (478)
..+|.+...||+.|.++.++.... -.+|-.++..+.+.+.+.++....|.++++++++..++
T Consensus 480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 557889999999999999988644 23444455555566667778777788888777766554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.57 Score=45.82 Aligned_cols=102 Identities=15% Similarity=0.232 Sum_probs=73.4
Q ss_pred hHHHhhhHHHHHHHHHHHHhh---h------HHHHHHHHHHHhhhhhhhhhhhhhhhhhcccccc---chhhhHHHHHHH
Q psy13206 66 PCLLTTGPLYIISWLLVIFTK---H------VYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKC---RGALSTFFIGML 133 (478)
Q Consensus 66 ~~l~~~~~l~~i~~~~~~~a~---~------~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~---Rg~~~~~~~~~~ 133 (478)
|++.++.+++.+|.++..++. + ...++++-++.++|.|+.=|....+..|..++++ |.....++....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567788888888888854442 2 2689999999999999999999999999998763 344556677889
Q ss_pred HHhHHHHhhcCCcc----chhhHHHHHHHHHHHHHHhh
Q psy13206 134 NTGILLEYTVGPYV----DYDTLAYVSLVIPVVFLMTF 167 (478)
Q Consensus 134 ~~G~~l~~~~g~~~----~~~~~~~~~~~~~~~~~~~~ 167 (478)
++|.+++..+.+++ +|+.-+.++.+..++.++.+
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 99999988777654 46665655554444444433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.18 Score=50.48 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=84.9
Q ss_pred CCchhhHHHHHHHHHH--HhhhhhHhhhhcC-----CchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHH
Q psy13206 272 ITPDECTLLLGILVFL--STFPTAFLVDRTG-----RRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISI 344 (478)
Q Consensus 272 ~~~~~~~~~~~~~~~~--~~~~~g~l~Dr~G-----Rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (478)
.++.+...+..+..++ .-++.|.++|.+. ||+-++++.++..+..+.++.. .. ... .......
T Consensus 22 ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~---~~-~~~------s~~~~~~ 91 (433)
T PF03092_consen 22 LSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL---PA-SES------SAAIAVV 91 (433)
T ss_pred CCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc---cc-ccc------hhhhHHH
Confidence 3555666666666654 4457899999763 4455666666554444433221 11 000 0111111
Q ss_pred HHHHHHHHhccc-ccchhhhcccC---CccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q psy13206 345 TCFAVIYSIGLG-PLVPTLQGEFF---PSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVL 420 (478)
Q Consensus 345 ~~~~~~~~~g~g-~~~~~~~~El~---p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~ 420 (478)
.++...++.... .+.-++..|.. |.+ ||...+.+.....+|+.++..+.+++.+..+....|.+.+....+..+.
T Consensus 92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~ 170 (433)
T PF03092_consen 92 LLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV 170 (433)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence 111122221111 12233445554 444 8888888888889999999888889888888777777777666666666
Q ss_pred hheeecCCC
Q psy13206 421 VYFIIPESK 429 (478)
Q Consensus 421 ~~~~~pEt~ 429 (478)
.+++.+|.+
T Consensus 171 ~~~~~~e~~ 179 (433)
T PF03092_consen 171 ALFLLEERK 179 (433)
T ss_pred HHHhhhhcc
Confidence 667777743
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=95.39 E-value=3.3 Score=41.37 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=26.0
Q ss_pred hhhhhhccccccchhhhHHHHHHHHHhHHHHhhc
Q psy13206 110 PMYIGEISGAKCRGALSTFFIGMLNTGILLEYTV 143 (478)
Q Consensus 110 ~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~ 143 (478)
-.+.-....++++|.+++....+++.|..+++.+
T Consensus 140 DGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 140 DGWALTMLSPENVGYASTCQTVGQTAGYFLSFTV 173 (544)
T ss_pred ehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHH
Confidence 3344455678999999999888999998877654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.3 Score=44.54 Aligned_cols=41 Identities=5% Similarity=-0.056 Sum_probs=37.5
Q ss_pred cchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13206 358 LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVIC 398 (478)
Q Consensus 358 ~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~ 398 (478)
+.|.+.+|++++++-.+-.++....+++|..+++.+...+.
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999998887766
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.65 Score=48.66 Aligned_cols=151 Identities=15% Similarity=0.158 Sum_probs=90.3
Q ss_pred HHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccc----------------------------
Q psy13206 281 LGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVD---------------------------- 332 (478)
Q Consensus 281 ~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------- 332 (478)
.-+++.+..++..+...|.-|-+.+-.+.+++++..++...-....+.+..+
T Consensus 141 ~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 220 (735)
T KOG3626|consen 141 YDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCR 220 (735)
T ss_pred cccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccC
Confidence 4455566666667777776666777788888888877776543222111000
Q ss_pred -----c---cccchHHHHHHHHHHHHHHhcccccc---hhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-
Q psy13206 333 -----L---SKFNWIPLISITCFAVIYSIGLGPLV---PTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDH- 400 (478)
Q Consensus 333 -----~---~~~~~~~~~~~~~~~~~~~~g~g~~~---~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~- 400 (478)
. ......+.+.+++-.++.++|..|+. .+|.-|..-++.-..-.|+...+..+|.+++-.+.+.+...
T Consensus 221 ~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lY 300 (735)
T KOG3626|consen 221 PSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLY 300 (735)
T ss_pred CCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHee
Confidence 0 01122233344444555666766654 35888888888888889999988888888776666654422
Q ss_pred -----------------cc-cchHHHHHHHHHHHHHHHhheeecCCCCCC
Q psy13206 401 -----------------YG-VYLNFYIYSLGCIICGVLVYFIIPESKGKT 432 (478)
Q Consensus 401 -----------------~g-~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~ 432 (478)
.| ||..|++.+...++.++-. ++.|.+..++
T Consensus 301 vD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp~~ 349 (735)
T KOG3626|consen 301 VDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELPKS 349 (735)
T ss_pred eccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCccc
Confidence 13 4455666665555555544 5566555443
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.68 Score=46.06 Aligned_cols=94 Identities=19% Similarity=0.294 Sum_probs=68.1
Q ss_pred HHHHhhhhhhhhhh---cccCchhHHHhhhHHHHHHHHHHHHh------------------hhHHHHHHHHHHHhhhhhh
Q psy13206 46 LGNLVTPIPIGFLV---DYVGRKPCLLTTGPLYIISWLLVIFT------------------KHVYVLYVVRFMQGLAMGI 104 (478)
Q Consensus 46 ~g~~ig~~~~G~l~---Dr~GRr~~l~~~~~l~~i~~~~~~~a------------------~~~~~l~~~R~l~G~~~g~ 104 (478)
+|..+|.++.+.++ +|+||++.+.++..+..++.++.-.. +++....+.=+++|++.+.
T Consensus 290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~ 369 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDAC 369 (461)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHH
Confidence 44444555555555 66799999999999888888777553 2456777888999999999
Q ss_pred hhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHH
Q psy13206 105 VFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLE 140 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~ 140 (478)
.-+..++++.... ++.|..+.++.-....++..++
T Consensus 370 ~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 370 FNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVA 404 (461)
T ss_pred HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 5555555555555555554443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.57 Score=46.43 Aligned_cols=116 Identities=11% Similarity=0.013 Sum_probs=83.1
Q ss_pred ccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh---hh-H-HHHHHHHHHHhh-----
Q psy13206 31 EMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT---KH-V-YVLYVVRFMQGL----- 100 (478)
Q Consensus 31 ~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a---~~-~-~~l~~~R~l~G~----- 100 (478)
++++...|.+=+.-.+..+.|.+.+.++.+|+|-.+.=..+.....+...++..+ +. . ....+.=++.|+
T Consensus 289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~ 368 (432)
T PF06963_consen 289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI 368 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence 7788889999999999999999999999999999998777777665544444322 21 1 122222233333
Q ss_pred hhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc
Q psy13206 101 AMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY 146 (478)
Q Consensus 101 ~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~ 146 (478)
|.=+.-....-++.|..|+++||...+......++--++.+.++..
T Consensus 369 GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 369 GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTII 414 (432)
T ss_pred HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2334445667788999999999999999888888877776655543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.018 Score=59.08 Aligned_cols=116 Identities=15% Similarity=0.069 Sum_probs=1.7
Q ss_pred HHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccc--------------------------
Q psy13206 280 LLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDL-------------------------- 333 (478)
Q Consensus 280 ~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------------------------- 333 (478)
...++.++..++..++.+|--|-+.+-.+.++++++.++...-.+....+....
T Consensus 46 ~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 125 (539)
T PF03137_consen 46 SYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSD 125 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCc
Confidence 344556666677777777754445566778888888777766544333221000
Q ss_pred --------cccchHHHHHHHHHHHHHHhcccccc---hhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHH
Q psy13206 334 --------SKFNWIPLISITCFAVIYSIGLGPLV---PTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQ 395 (478)
Q Consensus 334 --------~~~~~~~~~~~~~~~~~~~~g~g~~~---~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~ 395 (478)
..........+..-.+..++|..|.. .+|.-|..+++.-+.-.|+......+|..++..+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~ 198 (539)
T PF03137_consen 126 CQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGS 198 (539)
T ss_dssp --------------------------SSS--------------------------------------------
T ss_pred cccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHH
Confidence 00011112222233344455555543 458889999999888888888888777766655444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.38 Score=46.98 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=80.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHH---HHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhh
Q psy13206 34 SAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYII---SWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAP 110 (478)
Q Consensus 34 ~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i---~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~ 110 (478)
.++..|....|.+|-.++.--...+ |+-|-+.+.+--.+..+ .....-+.+|.|.+++.-+..|+-.|+.|..+.
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF 357 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF 357 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4456888888998877775444333 45333332222222222 222234458899999999999999999999999
Q ss_pred hhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC
Q psy13206 111 MYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP 145 (478)
Q Consensus 111 ~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~ 145 (478)
..+.|-.|+++|...++....+-+.|++++.+++.
T Consensus 358 ~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l 392 (402)
T PF02487_consen 358 YRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL 392 (402)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999998877663
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=93.47 E-value=7.8 Score=37.48 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=70.4
Q ss_pred ccceeecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhc-----ccCchhHHHhhhHHHHH
Q psy13206 3 GTSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVD-----YVGRKPCLLTTGPLYII 77 (478)
Q Consensus 3 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~D-----r~GRr~~l~~~~~l~~i 77 (478)
|..+|... .+|.+.++ .+.|-++++...-.+. . .---+.+.++.| |+||||.-++=.- +.+
T Consensus 44 GiP~GL~~-~iP~lL~a----------k~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q-~ll 109 (510)
T KOG3574|consen 44 GIPLGLIG-AIPLLLQA----------KGVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQ-YLL 109 (510)
T ss_pred CCchhHhh-hhHHHhcC----------CCcchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhccccceeeehH-HHH
Confidence 55566655 77877752 2334333333221111 1 113466778888 9999997543221 112
Q ss_pred HHHHHHHh-------------hhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhc
Q psy13206 78 SWLLVIFT-------------KHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTV 143 (478)
Q Consensus 78 ~~~~~~~a-------------~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~ 143 (478)
|.++..++ +|...+...=++.=+..+.--.+.-.+.-....+++-|.+++....+++.|..++..+
T Consensus 110 G~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 110 GLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred HHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 22222222 2333333333444444444445555566666788999999888888888888877654
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=92.97 E-value=4.8 Score=33.77 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccc
Q psy13206 278 TLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGP 357 (478)
Q Consensus 278 ~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 357 (478)
..+......+++++.+.+++++|.|+.+.++.++..+-... +... ..+..+.. ..+.+++.++
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~---~~~~----------~~~~l~~~----s~l~G~~~a~ 105 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS---FFYP----------NSYTLYPA----SALLGFGAAL 105 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHhh----------hHHHHHHH----HHHHhhhhHH
Confidence 34455556678888899999999999988876665543222 1110 11211111 2222333322
Q ss_pred ---cchhhhcccCCccccchhhHHHHHHHHHHHHH
Q psy13206 358 ---LVPTLQGEFFPSNTRGLAGGVTTITLTVISFL 389 (478)
Q Consensus 358 ---~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i 389 (478)
....+..+..+++.|++-.++.-.+...+..+
T Consensus 106 lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~ 140 (156)
T PF05978_consen 106 LWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIF 140 (156)
T ss_pred hhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 23346778888888888777665554444333
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.86 Score=45.34 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=18.3
Q ss_pred hHhhhhcCCchhHHH-hhHHHHHHHHHHHH
Q psy13206 293 AFLVDRTGRRPLLLV-SCFGSGISQLIAGT 321 (478)
Q Consensus 293 g~l~Dr~GRr~~l~~-~~~~~~i~~~~~~~ 321 (478)
.....|+||||..++ .-.++++.++.++.
T Consensus 61 s~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~ 90 (544)
T PF13000_consen 61 SVYSKRIGRRKSWIIPIQYLSGILMLYLSY 90 (544)
T ss_pred hhcccccCCcchhhhHHHHHHHHHHHHHHh
Confidence 355669999998655 44555555555443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.38 E-value=5 Score=36.86 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhc---cc
Q psy13206 280 LLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIG---LG 356 (478)
Q Consensus 280 ~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~g 356 (478)
...+....+.++.|.+.||.|||+.+..+........+.... ..+ .... .+.......+.+ ..
T Consensus 47 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~---~~~~~~~~~g~~~~~~~ 112 (338)
T COG0477 47 AFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL----APN-------VGLA---LLLILRLLQGLGGGGLL 112 (338)
T ss_pred HHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh----Ccc-------chHH---HHHHHHHHHHhhhHHHH
Confidence 344455566688999999999997776665442222111111 100 0011 111111112222 23
Q ss_pred ccchhhhcccCCc-cccchhhHHHHH-HHHHHHHHHHHHHHHHHHh
Q psy13206 357 PLVPTLQGEFFPS-NTRGLAGGVTTI-TLTVISFLVMKMYQVICDH 400 (478)
Q Consensus 357 ~~~~~~~~El~p~-~~Rg~~~g~~~~-~~~lg~~i~~~~~~~l~~~ 400 (478)
+....+.+|.+|. +.|+...+.... ...++..+++.+.+.+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 113 PVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788899887 678888887777 4666666666555444433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=92.25 E-value=3.1 Score=40.78 Aligned_cols=127 Identities=14% Similarity=0.223 Sum_probs=69.8
Q ss_pred HHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc--cccchhhhc
Q psy13206 287 LSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL--GPLVPTLQG 364 (478)
Q Consensus 287 ~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--g~~~~~~~~ 364 (478)
+..++...+.|..|-|++++.+.+...+...++. + .+. +..+-..-++|+.+. -...++|.=
T Consensus 56 ~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll-~---~~s------------v~~mq~~q~~yg~~~a~evay~sYiy 119 (412)
T PF01770_consen 56 AFLLPVFLLTDYLRYKPVIILQALSYIITWLLLL-F---GTS------------VLAMQLMQFFYGLATAAEVAYYSYIY 119 (412)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-H---HCc------------HHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 3445567899999999998887766555544321 1 110 111111223333322 233445555
Q ss_pred ccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHhheeecCCC
Q psy13206 365 EFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG-VYLNFYIYSLGCIICGVLVYFIIPESK 429 (478)
Q Consensus 365 El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~l~~~~~~~~~pEt~ 429 (478)
-..|+++--++.+.+++..-+|.+++..+...+....+ .+......+..+...+++..+++|..+
T Consensus 120 s~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 120 SVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK 185 (412)
T ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 55677777788888888877777766666555554323 222222334444455555556666644
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=91.13 E-value=3.1 Score=37.83 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=16.7
Q ss_pred cccchhhhHHHHHHHHHhHHHHh
Q psy13206 119 AKCRGALSTFFIGMLNTGILLEY 141 (478)
Q Consensus 119 ~~~Rg~~~~~~~~~~~~G~~l~~ 141 (478)
.|+|+..+.+...+.++|.++..
T Consensus 1 ~k~K~~~s~~n~~gf~iG~ii~~ 23 (267)
T PF07672_consen 1 QKKKSILSQFNPWGFNIGTIIVN 23 (267)
T ss_pred CCccceeeeeccccchhhHHHHH
Confidence 36777777777788888876653
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=3.2 Score=42.60 Aligned_cols=107 Identities=16% Similarity=0.109 Sum_probs=59.7
Q ss_pred cCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhH-HHH-HHHHHH----HHhhh-HHHHHHHHHHHhhhhhh
Q psy13206 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGP-LYI-ISWLLV----IFTKH-VYVLYVVRFMQGLAMGI 104 (478)
Q Consensus 32 ~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~-l~~-i~~~~~----~~a~~-~~~l~~~R~l~G~~~g~ 104 (478)
-+..+.+.+.++|+.|..+|+...|+++++--|+....-..+ +.. ++..+. ++... ...++..-++.|+-.|+
T Consensus 47 ~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~ 126 (521)
T PRK03612 47 DSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGM 126 (521)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667889999999999999999988744333332211111 111 111111 11111 12234455678899999
Q ss_pred hhhhhhhhhhhccc---cccchhhhHHHHHHHHHhHH
Q psy13206 105 VFTVAPMYIGEISG---AKCRGALSTFFIGMLNTGIL 138 (478)
Q Consensus 105 ~~~~~~~~~~E~~p---~~~Rg~~~~~~~~~~~~G~~ 138 (478)
.+|....+..+... .+.-|+..+....+..+|.+
T Consensus 127 ~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l 163 (521)
T PRK03612 127 EIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGL 163 (521)
T ss_pred HHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHH
Confidence 99998888766433 23334444444444444443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.00 E-value=23 Score=35.58 Aligned_cols=114 Identities=14% Similarity=0.053 Sum_probs=77.9
Q ss_pred cCcchhhHHHHHHHH-HHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhh------HHHHHHHHHHHhhh---
Q psy13206 32 MTSAESSWVVSIIEL-GNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKH------VYVLYVVRFMQGLA--- 101 (478)
Q Consensus 32 ~~~~~~~~~~s~~~~-g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~------~~~l~~~R~l~G~~--- 101 (478)
..++...++=+.+-+ ++.+-.++..++.+++-|.+++.+....+...=+++++.-. ..-....|=+++..
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 456667777777777 78888999999999999999998888888777777766411 01112233222211
Q ss_pred -----------------------hhhhhh-hhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC
Q psy13206 102 -----------------------MGIVFT-VAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP 145 (478)
Q Consensus 102 -----------------------~g~~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~ 145 (478)
-..... .-..+..|.+..++-.|...+.....+++.+++..+..
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~ 205 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTS 205 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 112222 23445678888999999999999999988887765543
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=89.09 E-value=2.4 Score=43.82 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=81.6
Q ss_pred ccCcchhhHHHHHHHHHHHhhhhhhhhhhccc-CchhHHHhhhHHHHHHHHHHHHhhh----------------------
Q psy13206 31 EMTSAESSWVVSIIELGNLVTPIPIGFLVDYV-GRKPCLLTTGPLYIISWLLVIFTKH---------------------- 87 (478)
Q Consensus 31 ~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~-GRr~~l~~~~~l~~i~~~~~~~a~~---------------------- 87 (478)
+.+...+.-.++.+.=-.....+..++++|-| ||=+++.++.++..++.++..++..
T Consensus 69 ~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s 148 (571)
T KOG1237|consen 69 HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPS 148 (571)
T ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcc
Confidence 44444444455555555556678889999988 9999999999988888655433311
Q ss_pred ---HHHHHHHHHHHhhhhhhhhhhhhhhhhhccc---cccc-h--hhhHHHHHHHHHhHHHHhhcCC
Q psy13206 88 ---VYVLYVVRFMQGLAMGIVFTVAPMYIGEISG---AKCR-G--ALSTFFIGMLNTGILLEYTVGP 145 (478)
Q Consensus 88 ---~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p---~~~R-g--~~~~~~~~~~~~G~~l~~~~g~ 145 (478)
...++.+.-+..+|.|+.-+....+-+|-++ ++++ . ....++....+.|.+++..+-.
T Consensus 149 ~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v 215 (571)
T KOG1237|consen 149 KLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV 215 (571)
T ss_pred hHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence 1367778888899999999999999999888 3322 2 4455667778888887765543
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=88.64 E-value=26 Score=34.38 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccch
Q psy13206 87 HVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRG 123 (478)
Q Consensus 87 ~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg 123 (478)
.|...++.=.+.|++.|......+...++ +|+++-.
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytq 151 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQ 151 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHH
Confidence 46777777788888888877777777766 4555443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=88.63 E-value=2.1 Score=31.57 Aligned_cols=66 Identities=15% Similarity=-0.017 Sum_probs=43.0
Q ss_pred HHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHH
Q psy13206 255 AVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAG 320 (478)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~ 320 (478)
.+.|..|...++.+.+..+.........++.++|.+...++.++..+|+.+..+.+...+.++.++
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 344455544444443434444555566778888888888888887777888888777777666554
|
Note that many members are hypothetical proteins. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=88.17 E-value=4.2 Score=41.17 Aligned_cols=111 Identities=12% Similarity=0.039 Sum_probs=65.6
Q ss_pred hhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccc-ccccc----------cccchH-HHHHHHHHHHHHH----
Q psy13206 289 TFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSEN-YTVDL----------SKFNWI-PLISITCFAVIYS---- 352 (478)
Q Consensus 289 ~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~----------~~~~~~-~~~~~~~~~~~~~---- 352 (478)
.++-.++.|+++|.+++............+.+...+...+ .+.+. ....+. ..+--..+..+|.
T Consensus 76 ~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aEl 155 (491)
T PF03219_consen 76 TILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAEL 155 (491)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445789999999998876655555544444443221111 11110 000110 1111112222221
Q ss_pred hc---ccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13206 353 IG---LGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD 399 (478)
Q Consensus 353 ~g---~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~ 399 (478)
.| ..-+.|.+..|+++.++-.+-.++....+++|..+++.+...+.+
T Consensus 156 wgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 156 WGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 223578899999999999999999999999999988888777766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=87.52 E-value=0.16 Score=48.34 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=2.2
Q ss_pred cccchhhhcccCCccccchhhHHHHHHHHHHHHHH
Q psy13206 356 GPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLV 390 (478)
Q Consensus 356 g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~ 390 (478)
+.....+.++..+++.|-.+..++.....+|-.++
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~G 300 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIG 300 (309)
T ss_dssp -HHHH------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888777777766655554443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=84.94 E-value=5.8 Score=38.72 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=47.5
Q ss_pred ccchhhhcccCCcc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhh
Q psy13206 357 PLVPTLQGEFFPSN---TRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVY 422 (478)
Q Consensus 357 ~~~~~~~~El~p~~---~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~ 422 (478)
|+...+.+|.++++ .|...........++|+.++....+++.++.++...|.+.++..+ .+++.+
T Consensus 52 ~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~-~~~~~f 119 (372)
T PF00854_consen 52 PNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML-LALIVF 119 (372)
T ss_dssp HHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH-HHHHHH
T ss_pred ccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH-HHHHHH
Confidence 56777788888765 456677778899999999999999999999988777766554444 444433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=84.25 E-value=36 Score=33.19 Aligned_cols=29 Identities=34% Similarity=0.363 Sum_probs=18.0
Q ss_pred hhhHhhh-----hcCCchhHHH-hhHHHHHHHHHH
Q psy13206 291 PTAFLVD-----RTGRRPLLLV-SCFGSGISQLIA 319 (478)
Q Consensus 291 ~~g~l~D-----r~GRr~~l~~-~~~~~~i~~~~~ 319 (478)
+-..++| |+||||..++ +..+.+..+..+
T Consensus 82 lWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllL 116 (510)
T KOG3574|consen 82 LWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLL 116 (510)
T ss_pred HHHhhhHHHHHHhhccccceeeehHHHHHHHHHHH
Confidence 3456777 9999998654 444445444443
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=83.61 E-value=4.6 Score=39.40 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=77.7
Q ss_pred hHHHHH-HHHHHHhhhhhhhhhhcccCchhHHHhhhHHHH-HHHHH-H------HHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 38 SWVVSI-IELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYI-ISWLL-V------IFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 38 ~~~~s~-~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~-i~~~~-~------~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
-.+... |.++..+|.+...++-++ +||+..+...+=.. +-.+. | .+-.+-+.+++.-.+.|+..|=....
T Consensus 285 ~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl 363 (406)
T KOG1479|consen 285 LLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL 363 (406)
T ss_pred HHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence 344455 889999998888887666 56665444433332 22222 1 22345678889999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG 144 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g 144 (478)
.+.+.-+-.|++++-.++.+...+...|..+|.+++
T Consensus 364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999888888888888887765443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.50 E-value=32 Score=35.40 Aligned_cols=48 Identities=4% Similarity=-0.013 Sum_probs=29.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHHH
Q psy13206 373 GLAGGVTTITLTVISFLVMKMYQVI-CDHYGVYLNFYIYSLGCIICGVL 420 (478)
Q Consensus 373 g~~~g~~~~~~~lg~~i~~~~~~~l-~~~~g~~~~~~~~~~~~~l~~~~ 420 (478)
|...|-......+|+.++..+++.+ ...+|.....++.+...++.+++
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALV 192 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 5566777777888888888877764 44566554454555444444433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=80.96 E-value=7.2 Score=38.99 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcccCch--hHHH--hhhHHHHHHHHHHHH---------hhhHHHHHHHHHHHhhhhhhh
Q psy13206 39 WVVSIIELGNLVTPIPIGFLVDYVGRK--PCLL--TTGPLYIISWLLVIF---------TKHVYVLYVVRFMQGLAMGIV 105 (478)
Q Consensus 39 ~~~s~~~~g~~ig~~~~G~l~Dr~GRr--~~l~--~~~~l~~i~~~~~~~---------a~~~~~l~~~R~l~G~~~g~~ 105 (478)
.+..+|.+|..+|-.+..+. ..-++| +.++ +.-+++..--++|.. -++-+..++.-++.|+..|-.
T Consensus 311 i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~ 389 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL 389 (437)
T ss_pred HHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence 34567778888888766543 112333 4433 233344444344432 246677788899999999999
Q ss_pred hhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcC
Q psy13206 106 FTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG 144 (478)
Q Consensus 106 ~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g 144 (478)
.+.++.+..+..++++|..++.+...+...|..+|..++
T Consensus 390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888899888776543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.44 E-value=47 Score=33.41 Aligned_cols=42 Identities=7% Similarity=-0.052 Sum_probs=36.2
Q ss_pred cchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13206 358 LVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICD 399 (478)
Q Consensus 358 ~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~ 399 (478)
+.|....|+...++-.+-.++.+..++++..+...+..++.+
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788999999999999999999999999888888877765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 478 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-17 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 4e-07
Identities = 67/472 (14%), Positives = 134/472 (28%), Gaps = 141/472 (29%)
Query: 74 LYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMY--IGEISGAKCRG--ALSTFF 129
+ W L+ + + V +F++ + + Y + + R ++ +
Sbjct: 64 TLRLFWTLLSKQEEM----VQKFVEEV-------LRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 130 IGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFLMTFIW-MPESPYFLI--MKG----- 181
I + L + Y+ VS + P + L + + + LI + G
Sbjct: 113 IEQRDR---LYNDNQVFAKYN----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 182 ------RDVDARKSL----FWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIIST 231
+ + FWL +S + + L + ++ D I
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 232 PAN---------------RRSLLI---VQIVAVAD---------VISGMSAVLPYASSTF 264
+ LL+ VQ + + + V + S+
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA- 284
Query: 265 ARTEGSLI------TPDECTLLLGILV-FLSTFPTAFLVDRTGRRPLLLVSCFGSGISQL 317
T SL TPDE + +L+ +L P + P L S I
Sbjct: 285 TTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDG 340
Query: 318 IAGTYYLLSENY-TVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEF-----FPSNT 371
+A +N+ V+ K I S+ L P + F FP +
Sbjct: 341 LA-----TWDNWKHVNCDKLTTIIESSLNV--------LEP--AEYRKMFDRLSVFPPSA 385
Query: 372 RGLAGGVTTITLTV-----ISFLVMKMYQVIC-----DHYGVYLNFYIYSLGCIICGVLV 421
+ TI L++ I VM + + + I S+
Sbjct: 386 H-----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--------- 431
Query: 422 YFIIPESKGKTFAQIQEELNKHIAHKSKLKEQRKQNKINRNNEKADNNNVTK 473
Y + +++ E H + + K D++++
Sbjct: 432 YL-------ELKVKLENEYALH----RSIVDHYNIPK------TFDSDDLIP 466
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 5e-04
Identities = 53/318 (16%), Positives = 88/318 (27%), Gaps = 99/318 (31%)
Query: 67 C--LLTTGPLYIISWLLVIFTKHVYVLYVVR-FMQGLAMGI---------------VFTV 108
C LLTT + +L T H+ + + + V T
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVDYDTLA--------------- 153
P + I R L+T+ + +V+ D L
Sbjct: 326 NPRRLSII-AESIRDGLATW-----------DNW--KHVNCDKLTTIIESSLNVLEPAEY 371
Query: 154 ---YVSLVIPVVFLMTFIWMPES---PYFLIMKGRDVDARKSLFWLRGGRESSKDKINLE 207
+ L + F P S P L+ SL W + +N +
Sbjct: 372 RKMFDRLSV---F-------PPSAHIPTILL----------SLIWFDVIKSDVMVVVN-K 410
Query: 208 LSN----IKQDVEREMKLSDDFMDIISTPANRRSL--LIVQIVAVADVISGMSAVLPYAS 261
L KQ E + + ++++ N +L IV + + PY
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 262 STFARTEG---SLITPDECTLLLGILVFLSTFPTAFL----VDRTGRRPLLLVSCFGSGI 314
F G I E L F FL +++ R + GS +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTL---------FRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 315 SQLIAGTYYLLSENYTVD 332
+ L +Y + Y D
Sbjct: 522 NTLQQLKFY---KPYICD 536
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 16/123 (13%), Positives = 39/123 (31%), Gaps = 11/123 (8%)
Query: 55 IGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIG 114
+++ +G K LL G + + + F + +++ + + + YI
Sbjct: 279 APLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338
Query: 115 EISGAKCRGALSTFF----------IGMLNTGILLEYTVGPYVDYDTLAYVSLVIPVVFL 164
+ + + G + E +G Y L V+L ++ +
Sbjct: 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISV 397
Query: 165 MTF 167
T
Sbjct: 398 FTL 400
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.92 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.91 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.9 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.23 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.12 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.1 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.01 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.93 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.91 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.84 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-52 Score=423.42 Aligned_cols=424 Identities=21% Similarity=0.363 Sum_probs=317.8
Q ss_pred cccceeecchhhhhhhcccccccCCCcc--cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHH
Q psy13206 2 AGTSMGWPSPVLRLFKSNITDMFRNETY--IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISW 79 (478)
Q Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~ 79 (478)
+||.+|+|..........+.+.+..+.+ .+.++.+.||++|++++|.++|++++|+++||+|||++++++.+++.+++
T Consensus 20 g~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~ 99 (491)
T 4gc0_A 20 GGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISG 99 (491)
T ss_dssp HHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4677888877665544344344433322 24456678999999999999999999999999999999999999999999
Q ss_pred HHHH------------------HhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHh
Q psy13206 80 LLVI------------------FTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEY 141 (478)
Q Consensus 80 ~~~~------------------~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~ 141 (478)
++++ +++|+++++++|+++|+|.|+..+++++|++|++|+++||+..++.+.+...|.+++.
T Consensus 100 i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~ 179 (491)
T 4gc0_A 100 VGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVY 179 (491)
T ss_dssp HHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhh
Confidence 9999 4889999999999999999999999999999999999999999999999999988776
Q ss_pred hcCCc------------cchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHH
Q psy13206 142 TVGPY------------VDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELS 209 (478)
Q Consensus 142 ~~g~~------------~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 209 (478)
.++.. ..||..+.....++++.++...++||||||+..|+|.||+.+.+++.++... ..++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~-----~~~~~~ 254 (491)
T 4gc0_A 180 CVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL-----ATQAVQ 254 (491)
T ss_dssp HHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred hcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch-----hHHHHH
Confidence 65421 2345555555566667777788899999999999999999999987753211 111111
Q ss_pred HHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHh
Q psy13206 210 NIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLST 289 (478)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (478)
+.++..+++++.. .....+ .+++..+.......+++.+...+..|.+......+...........+.++..++++
T Consensus 255 ~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (491)
T 4gc0_A 255 EIKHSLDHGRKTG-GRLLMF----GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFT 329 (491)
T ss_dssp HHHHHHHHHHHHT-THHHHS----CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhh-hHHHHh----cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHH
Confidence 1111111111111 111111 12344445555566667777777778887776655543344455666778888999
Q ss_pred hhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCc
Q psy13206 290 FPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPS 369 (478)
Q Consensus 290 ~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~ 369 (478)
+++++++||+|||+.++.+..+++++++.++...... ...+........+..+++.+.+|..+.+++|++|+
T Consensus 330 ~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt 401 (491)
T 4gc0_A 330 VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 401 (491)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT--------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH
Confidence 9999999999999999988888887776665443221 12234455556667778888889999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHh------cccchHHHHHHHHHHHHHHHhheeecCCCCCCHHHHHHHHhhh
Q psy13206 370 NTRGLAGGVTTITLTVISFLVMKMYQVICDH------YGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEELNKH 443 (478)
Q Consensus 370 ~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~------~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~~~~~~~~~~~~ 443 (478)
+.|+++.|+++..+++++++++.+++.+.+. .+....++++++.+++.++++++++||||||++||+|+.++++
T Consensus 402 ~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 402 AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 9999999999999999999999998876432 3444567888888888898899999999999999998776543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=268.63 Aligned_cols=358 Identities=15% Similarity=0.162 Sum_probs=236.9
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF----TKHVYVLYVVRFMQGLAMGI 104 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~----a~~~~~l~~~R~l~G~~~g~ 104 (478)
++ .++.+.+++.+++.++..++++++|+++||+|||+++.++.++++++.+++++ ++|++.++++|+++|++.|.
T Consensus 57 ~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 135 (451)
T 1pw4_A 57 QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM 135 (451)
T ss_dssp ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHH
T ss_pred Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhh
Confidence 35 78899999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cc-hhhHHHHHHHHHHHH-HHhhccccCChHHHH
Q psy13206 105 VFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VD-YDTLAYVSLVIPVVF-LMTFIWMPESPYFLI 178 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~-~~~~~~~~~~~~~~~-~~~~~~~pESp~~l~ 178 (478)
..+...+++.|++|+++|+++.++.+....+|.++++.++.. .+ ||+.+++...+.++. ++.+.++||+|++..
T Consensus 136 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (451)
T 1pw4_A 136 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCG 215 (451)
T ss_dssp THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTC
T ss_pred ccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcC
Confidence 999999999999999999999999999999998888777643 46 998877766655543 344566899986432
Q ss_pred HcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchh-HHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHH
Q psy13206 179 MKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDD-FMDIISTPANRRSLLIVQIVAVADVISGMSAVL 257 (478)
Q Consensus 179 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (478)
.+.+.+ .+++ ...+. +...+++...+.. .++.++++ .++..... ......+...+.
T Consensus 216 ~~~~~~-----------~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~ 272 (451)
T 1pw4_A 216 LPPIEE-----------YKND----YPDDY---NEKAEQELTAKQIFMQYVLPNK----LLWYIAIA-NVFVYLLRYGIL 272 (451)
T ss_dssp CCSCTT-----------TCCC--------------------CCTHHHHHHTSSCH----HHHHHHHH-HHHHHHHHHHHH
T ss_pred CCChhh-----------hccc----ccccc---hhhhhcccccccchHHHHHcCH----HHHHHHHH-HHHHHHHHHHHH
Confidence 111000 0000 00000 0000011111111 23333322 22221111 111222334445
Q ss_pred HhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhc--CCchhHHHhhHHHH-HHHHHHHHHHhhcccccccc
Q psy13206 258 PYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRT--GRRPLLLVSCFGSG-ISQLIAGTYYLLSENYTVDL 333 (478)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~--GRr~~l~~~~~~~~-i~~~~~~~~~~~~~~~~~~~ 333 (478)
.+.+.++.+..+ +............++.+++.++.+++.||+ |||+.+..+..+.. ++.+.+ .. ..
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~------ 342 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY---WM-NP------ 342 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT---TS-CC------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH---HH-hc------
Confidence 566655554322 211223344455667788899999999999 99988776655544 332221 11 10
Q ss_pred cccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHH-HHHHHHHHHHHHHHhcccchHHHHHHH
Q psy13206 334 SKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTV-ISFLVMKMYQVICDHYGVYLNFYIYSL 412 (478)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~l-g~~i~~~~~~~l~~~~g~~~~~~~~~~ 412 (478)
....+.........+++. .+..+..+.+..|.+|++.||++.|+.+....+ +..+++.+.+.+.+..+....+++.++
T Consensus 343 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 421 (451)
T 1pw4_A 343 AGNPTVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 421 (451)
T ss_dssp TTCHHHHHHHHHHHHHHH-THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHH-hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 001122122222222211 122344567889999999999999999999999 999999999999998887666766666
Q ss_pred HHHHHHHHh
Q psy13206 413 GCIICGVLV 421 (478)
Q Consensus 413 ~~~l~~~~~ 421 (478)
..++..++.
T Consensus 422 ~~~~~~~~~ 430 (451)
T 1pw4_A 422 GSILAVILL 430 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=252.12 Aligned_cols=329 Identities=14% Similarity=0.124 Sum_probs=227.5
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHH---HHhhhHHHHHHHHHHHhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLV---IFTKHVYVLYVVRFMQGLAMGIV 105 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~---~~a~~~~~l~~~R~l~G~~~g~~ 105 (478)
++++++.+.+++.+++.+++.+++++.|+++||+|||++++++.++++++++++ ++++|++.++++|+++|++.|..
T Consensus 55 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~ 134 (438)
T 3o7q_A 55 AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCL 134 (438)
T ss_dssp HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHh
Confidence 467899999999999999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred hhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCccc------------------------------hhhHHHH
Q psy13206 106 FTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVD------------------------------YDTLAYV 155 (478)
Q Consensus 106 ~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~~------------------------------~~~~~~~ 155 (478)
.+....++.|+.|+++|++..++.+....+|.++++.++..+. ||+.+++
T Consensus 135 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 214 (438)
T 3o7q_A 135 ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMI 214 (438)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999988888765422 7777655
Q ss_pred HHHHHHHHHH--hhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcc
Q psy13206 156 SLVIPVVFLM--TFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPA 233 (478)
Q Consensus 156 ~~~~~~~~~~--~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (478)
...+..+..+ .+...||+++.. .+++++ ++...++++.++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~p~~~~~~------------------~~~~~~-----------------~~~~~~~~~~~~~~~ 259 (438)
T 3o7q_A 215 IVAIVLLVALLIMLTKFPALQSDN------------------HSDAKQ-----------------GSFSASLSRLARIRH 259 (438)
T ss_dssp HHHHHHHHHHHHHHCCCCCCTTTC------------------CCCSST-----------------TSHHHHHHHHTTCSH
T ss_pred HHHHHHHHHHHHHHHcCCcccccc------------------cccccc-----------------cchhhhHHHHHhChH
Confidence 4443333322 233457765310 000000 011123444555443
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHhHHHH-HHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHH
Q psy13206 234 NRRSLLIVQIVAVADVISGMSAVLPYASST-FART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFG 311 (478)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~ 311 (478)
.+....... ...........+.+.+ +.+. +.+............++.+++.++.++++||+|||+.+..+.++
T Consensus 260 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~ 334 (438)
T 3o7q_A 260 WRWAVLAQF-----CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI 334 (438)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 332222111 1112233444566665 5444 22322233444555677788999999999999999998888777
Q ss_pred HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHH
Q psy13206 312 SGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVM 391 (478)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~ 391 (478)
.+++.+.... .+ .....+......++++ ...|..+.+..|.+|++ |+++.++.. .+.+++.++|
T Consensus 335 ~~~~~~~~~~----~~---------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~ 398 (438)
T 3o7q_A 335 AMALCLISAF----AG---------GHVGLIALTLCSAFMS-IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVT 398 (438)
T ss_dssp HHHHHHHHHH----CC---------HHHHHHHHHHHHHHHT-THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHH
T ss_pred HHHHHHHHHH----cC---------CcHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHH
Confidence 6665444321 11 0111222222222222 23456677878999977 899988877 6789999999
Q ss_pred HHHHHHHHhcc-cchHHHHHHHH
Q psy13206 392 KMYQVICDHYG-VYLNFYIYSLG 413 (478)
Q Consensus 392 ~~~~~l~~~~g-~~~~~~~~~~~ 413 (478)
.+.+.+.+..| ....+++.++.
T Consensus 399 ~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 399 PVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp HHHHHHHHHHTSSGGGGHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999988 65666554433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-28 Score=243.24 Aligned_cols=396 Identities=14% Similarity=0.077 Sum_probs=226.5
Q ss_pred cccccCcchhhHHHHHHHHHHHhhhhhhhhhhcc-cCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhh
Q psy13206 28 TYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY-VGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVF 106 (478)
Q Consensus 28 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr-~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~ 106 (478)
.+++.++.+.+++.+++.++..+++++.|+++|| +|||+++.++.++..++.+++++++|++.++++|+++|++.|...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3578899999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccccc--chhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHHhhcc-----ccCChH
Q psy13206 107 TVAPMYIGEISGAKC--RGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLMTFIW-----MPESPY 175 (478)
Q Consensus 107 ~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~-----~pESp~ 175 (478)
+...+++.|++|+++ |+...+..+...++|..+++.++. ..+||+.+++.....++..+...+ .++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999988 666777777888888777776654 357888887665443333322221 111100
Q ss_pred HHHHcCCHHHHHHHHHH---------------HhCCCCCchhhHHH-HHHHHHHHH--HHhhccchhHHHhhcCcchhHH
Q psy13206 176 FLIMKGRDVDARKSLFW---------------LRGGRESSKDKINL-ELSNIKQDV--EREMKLSDDFMDIISTPANRRS 237 (478)
Q Consensus 176 ~l~~~~~~~~a~~~l~~---------------~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 237 (478)
--....+.++.++..++ ......+..+.... ......... ...........+..+ ++..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 284 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEH-LRVVS- 284 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------CTT-
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHH-HHHHH-
Confidence 00011123333333222 01111111110000 000000000 000000000000000 00111
Q ss_pred HHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHH-----HhhHH
Q psy13206 238 LLIVQIVAVADVISGMSAVLPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLL-----VSCFG 311 (478)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~-----~~~~~ 311 (478)
........ ......+.....+.+....+... +............+..+++..+.+++.||+|||+... .+.++
T Consensus 285 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAA-VLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHH-HHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 11111010 10111111112223333333222 2234455556677778888889999999999997654 44444
Q ss_pred HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHH
Q psy13206 312 SGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVM 391 (478)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~ 391 (478)
.+++.+.+........ .+.....+........+++.. ....+..+.+..|.+|++.||++.|+.+....+|..+++
T Consensus 364 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~ 439 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG---TSGKVSPLWLVGSWALVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA 439 (491)
T ss_dssp HHHHHTTTHHHHHHCC---CCTTCCTHHHHHHHHHHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC---CCCCccHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333322111100 000011122222222222222 223566778999999999999999999999999999999
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCCC
Q psy13206 392 KMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGK 431 (478)
Q Consensus 392 ~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~ 431 (478)
.+.+.+.+. +....+.++++.+++.+++.+++.|+++++
T Consensus 440 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 440 QLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988776543 444566777777777777776666666543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-26 Score=222.79 Aligned_cols=320 Identities=17% Similarity=0.142 Sum_probs=205.3
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++.++++|++.++++|+++|++.+...+.
T Consensus 29 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~ 108 (375)
T 2gfp_A 29 DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVM 108 (375)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHHHHH-hhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVVFLM-TFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~~~~-~~~~~pESp~~l~~~~~~ 183 (478)
...++.|+.|+++|++..+..+....+|..+++.++.. .+||..+++.....++..+ ...++||+|++. ++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~- 184 (375)
T 2gfp_A 109 ARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---AP- 184 (375)
T ss_dssp HHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CC-
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---cc-
Confidence 99999999999999999999999988888887776543 3688777766655555444 455678887421 00
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
++ +...++++.+++|..+..... . .....+...+..+.+.+
T Consensus 185 -------------~~---------------------~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~ 225 (375)
T 2gfp_A 185 -------------RT---------------------RLLTSYKTLFGNSGFNCYLLM----L-IGGLAGIAAFEACSGVL 225 (375)
T ss_dssp -------------CC---------------------CTTTCSTHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHCSCS
T ss_pred -------------cc---------------------cHHHHHHHHhcCcchHHHHHH----H-HHHHHHHHHHHHHHHHH
Confidence 00 001122233322221111111 1 11111222222222222
Q ss_pred HHh-cCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHH-HHHHHHHHHHHHhhcccccccccccchHHH
Q psy13206 264 FAR-TEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFG-SGISQLIAGTYYLLSENYTVDLSKFNWIPL 341 (478)
Q Consensus 264 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (478)
+.+ .+.+............++.+++.++.+++.||.+||. ..+... ...+......... .. ...+...
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~ 295 (375)
T 2gfp_A 226 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF-GV-------MNVWTLL 295 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH-HH-------HHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh-cc-------ccHHHHH
Confidence 111 1111011122233345566677777788888887732 222221 1111110000000 00 0011111
Q ss_pred HHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy13206 342 ISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGV 403 (478)
Q Consensus 342 ~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~ 403 (478)
.....+++.++. ..+....+..|.+| +.||++.|+.+....++..+++.+.+.+.+..+.
T Consensus 296 ~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 355 (375)
T 2gfp_A 296 VPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQG 355 (375)
T ss_dssp HHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 222223333332 34666778889998 8999999999999999999999998888765543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=209.37 Aligned_cols=136 Identities=16% Similarity=0.194 Sum_probs=119.3
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhccc-CchhHHHhhhHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV-GRKPCLLTTGPLYIISWLLVIFTK-HVYVLYVVRFMQGLAMGIVFT 107 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~-GRr~~l~~~~~l~~i~~~~~~~a~-~~~~l~~~R~l~G~~~g~~~~ 107 (478)
.+.++.+.+++.+++.++..+++++.|+++||+ |||+++.++.++..++.++.++++ |++.++++|+++|++.|...+
T Consensus 49 ~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 128 (524)
T 2xut_A 49 EELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKP 128 (524)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence 338999999999999999999999999999999 999999999999999999999999 999999999999999999999
Q ss_pred hhhhhhhhccccccchhhhHH---HHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHH
Q psy13206 108 VAPMYIGEISGAKCRGALSTF---FIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLM 165 (478)
Q Consensus 108 ~~~~~~~E~~p~~~Rg~~~~~---~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~ 165 (478)
...+++.|++|+++|++..+. .....++|..+++.++. ..+|++.+++.....++..+
T Consensus 129 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 129 LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999877666 77788888888877764 34788877766555444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-25 Score=221.24 Aligned_cols=356 Identities=11% Similarity=0.062 Sum_probs=198.5
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHH---HHHHhhhH-HHHHHHHHHHhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWL---LVIFTKHV-YVLYVVRFMQGLAMGI 104 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~---~~~~a~~~-~~l~~~R~l~G~~~g~ 104 (478)
+++.++.+.|++.+++.+++.++++++|+++||+|||++++++..++.+++. ..++++.. ..+..+|++.|++.|.
T Consensus 37 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 116 (417)
T 2cfq_A 37 INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGF 116 (417)
T ss_dssp TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999988887765322 12333322 1345677888887777
Q ss_pred hhhhhhhhhhhcccc--ccchhhhHHHHHHHHHhHHHHhhcCCc---cchhhHHHHHHHHHHHHHHhhccc-cCChHHHH
Q psy13206 105 VFTVAPMYIGEISGA--KCRGALSTFFIGMLNTGILLEYTVGPY---VDYDTLAYVSLVIPVVFLMTFIWM-PESPYFLI 178 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~--~~Rg~~~~~~~~~~~~G~~l~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~-pESp~~l~ 178 (478)
.++.....+.++.++ ++|+...+.......+|..+++.++.. .+|+..+++.....++..+...+. ||+|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--- 193 (417)
T 2cfq_A 117 CFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS--- 193 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---
T ss_pred HHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccccc---
Confidence 666666666666654 345554444443444444444433321 357766665444333333333333 45432
Q ss_pred HcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHH
Q psy13206 179 MKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLP 258 (478)
Q Consensus 179 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (478)
+.+.++ .+++.. ++....+.++.++++..+........ ....+..+..
T Consensus 194 -~~~~~~----------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 241 (417)
T 2cfq_A 194 -SATVAN----------AVGANH----------------SAFSLKLALELFRQPKLWFLSLYVIG-----VSCTYDVFDQ 241 (417)
T ss_dssp -SSCSSS----------SSSSCC----------------CCCCHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred -cccccc----------cccccc----------------ccccHHHHHHHhcCCchhhHHHHHHH-----HHHHHHHHHH
Confidence 000000 000000 00001123344443332221111111 1111112222
Q ss_pred hHHHHHHhcCCCC-CCch---hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccccc
Q psy13206 259 YASSTFARTEGSL-ITPD---ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLS 334 (478)
Q Consensus 259 ~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (478)
+.+.++.+..... .... ....+..+...++.++.++++||+|||+++..+.++.++..+... . .+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~---~-~~------- 310 (417)
T 2cfq_A 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS---F-AT------- 310 (417)
T ss_dssp HHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT---T-CC-------
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH---H-hc-------
Confidence 2333333221100 0111 222333455667888999999999999988777666555433321 0 10
Q ss_pred ccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHH-HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy13206 335 KFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVT-TITLTVISFLVMKMYQVICDHYGVYLNFYIYSLG 413 (478)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~-~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~ 413 (478)
..+..........+.+. ...+..+.+++|.+|++.||++.++. +...++|+.++|.+.+.+.+..+....|.+.++.
T Consensus 311 -~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~ 388 (417)
T 2cfq_A 311 -SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp -SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHH
Confidence 11111111111122111 11223467899999999999999995 7888899999999999988877755566666766
Q ss_pred HHHHHHHhheeecCCCCCC
Q psy13206 414 CIICGVLVYFIIPESKGKT 432 (478)
Q Consensus 414 ~~l~~~~~~~~~pEt~~~~ 432 (478)
.++..++.+++.||++..+
T Consensus 389 ~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 389 ALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHhhhcCCCchH
Confidence 6666666666778766444
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=120.43 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=106.4
Q ss_pred CchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHH
Q psy13206 273 TPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYS 352 (478)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (478)
..........++..++.++.|+++||+|||+.++.+.++.+++.++........++ .+..++.....+++.+
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~ 134 (451)
T 1pw4_A 63 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--------IAVMFVLLFLCGWFQG 134 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS--------SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc--------HHHHHHHHHHHHHHhh
Confidence 33444455667777889999999999999999999888888776665431100111 1111222222222222
Q ss_pred hcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHhheeecCCCC
Q psy13206 353 IGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG-VYLNFYIYSLGCIICGVLVYFIIPESKG 430 (478)
Q Consensus 353 ~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~l~~~~~~~~~pEt~~ 430 (478)
...+....+.+|.+|++.|+++.++.+....+|..+++.+.+.+.+..+ +...+++.++..++..++.++++||++.
T Consensus 135 -~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 135 -MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp -HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred -hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 2335566789999999999999999999999999999999998888888 8888888887777777777777888654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-10 Score=109.30 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc
Q psy13206 277 CTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG 356 (478)
Q Consensus 277 ~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g 356 (478)
......+...++.++.|+++||+|||+.+..+.++.++..+...... + .+.........+++.+ ...
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~--------~~~l~~~~~l~g~~~~-~~~ 106 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS----S--------LTVLIAASAMQGMGTG-VGG 106 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH----H--------HHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc----c--------HHHHHHHHHHHHHHHH-hhh
Confidence 33445666778899999999999999999988888777766543211 0 0111111111111111 123
Q ss_pred ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCCC
Q psy13206 357 PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGK 431 (478)
Q Consensus 357 ~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~ 431 (478)
+....+.+|.+|++.|+++.++.+....+|..+++.+.+.+.+..++...+++.++..++..+..++++||++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 456678899999999999999999999999999999998887777777777777766666666566778887543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-09 Score=106.70 Aligned_cols=138 Identities=7% Similarity=-0.058 Sum_probs=88.7
Q ss_pred HHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccccc
Q psy13206 255 AVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLS 334 (478)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (478)
...+..+....+.+.+............++..++.++.|+++||+|||+.++.+.++.+++.++...... .+
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-~~------- 115 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-IM------- 115 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-TT-------
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-cc-------
Confidence 3344445444443333222333444456666788999999999999999999998888877665422111 11
Q ss_pred ccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Q psy13206 335 KFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVIC-DHYG 402 (478)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~-~~~g 402 (478)
..+..++.....+++.+ ...+....+.+|.+|++.|+++.++.+....+|..+++.+.+.+. +..+
T Consensus 116 -~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 116 -NYTLFLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp -CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred -cHHHHHHHHHHHHhhHH-HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 11111111122222221 123455678899999999999999999999999999999988887 4443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-09 Score=105.14 Aligned_cols=137 Identities=18% Similarity=0.202 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHhhhhhHhhhh-cCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 277 CTLLLGILVFLSTFPTAFLVDR-TGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 277 ~~~~~~~~~~~~~~~~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
......++..+++++.|+++|| +|||+++..+.++.+++.+.... .+ ..+...+.....+++.+ ..
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~~~~l~g~~~~-~~ 125 (491)
T 4aps_A 59 IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----PF--------GASALFGSIILIIIGTG-FL 125 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS----CC--------STTHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----hh--------hHHHHHHHHHHHHHHHH-hc
Confidence 3344566677889999999999 89999999888877776655431 11 11222222222222222 12
Q ss_pred cccchhhhcccCCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeec
Q psy13206 356 GPLVPTLQGEFFPSNT--RGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIP 426 (478)
Q Consensus 356 g~~~~~~~~El~p~~~--Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~p 426 (478)
.+....+.+|.+|++. |+++.++.+....+|..++|.+.+.+.+..++...|++.++..++..+..++..|
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3556778999999998 7778888889999999999999999999888887777766555554444433333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-08 Score=102.16 Aligned_cols=137 Identities=17% Similarity=0.235 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHHHHhhhhhHhhhhc-CCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHh
Q psy13206 275 DECTLLLGILVFLSTFPTAFLVDRT-GRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSI 353 (478)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (478)
........+...++.++.|+++||+ |||+++..+.++.+++.++.... + ...+.........+++.+
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~l~g~~~~- 124 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF----E-------HSVQGFYTGLFLIALGSG- 124 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----S-------SCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----c-------ccHHHHHHHHHHHHHhcc-
Confidence 3444455667778899999999999 99999988877777765554321 0 001111111122222221
Q ss_pred cccccchhhhcccCCccccchhhHH---HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhe
Q psy13206 354 GLGPLVPTLQGEFFPSNTRGLAGGV---TTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYF 423 (478)
Q Consensus 354 g~g~~~~~~~~El~p~~~Rg~~~g~---~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~ 423 (478)
...+....+.+|.+|++.|+++.+. .+....+|..++|.+.+.+.+..++...|++.++..++..+..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 125 GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 2335667789999999999877666 888899999999999988888888777777766555554444333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-08 Score=100.06 Aligned_cols=145 Identities=19% Similarity=0.140 Sum_probs=85.8
Q ss_pred HHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccc----cccc-ccccchHHHHHHHHHHHHHHhcc
Q psy13206 281 LGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSEN----YTVD-LSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 281 ~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
..++.++|+++.|+++||+|||+.++.+.++..++.+..+........ .... ....++. .+....+..+++.
T Consensus 64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~---~l~~~R~l~G~g~ 140 (491)
T 4gc0_A 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVP---EFVIYRIIGGIGV 140 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHH---HHHHHHHHHHHHH
Confidence 456678899999999999999999999888887776654421100000 0000 0001111 2223334444433
Q ss_pred c---ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHHHhheee
Q psy13206 356 G---PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG-------VYLNFYIYSLGCIICGVLVYFII 425 (478)
Q Consensus 356 g---~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g-------~~~~~~~~~~~~~l~~~~~~~~~ 425 (478)
| +..+.+.+|..|++.|+...++.+....+|..+.+.+........+ .+...........+..++..++.
T Consensus 141 G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
T 4gc0_A 141 GLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTV 220 (491)
T ss_dssp HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcC
Confidence 3 4567899999999999999999988887777766665544443221 11111222223333344455678
Q ss_pred cCC
Q psy13206 426 PES 428 (478)
Q Consensus 426 pEt 428 (478)
||+
T Consensus 221 peS 223 (491)
T 4gc0_A 221 PES 223 (491)
T ss_dssp CCC
T ss_pred CCC
Confidence 997
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-09 Score=105.95 Aligned_cols=141 Identities=10% Similarity=0.143 Sum_probs=104.8
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy13206 34 SAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYI 113 (478)
Q Consensus 34 ~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 113 (478)
..+.+++.++..++.+++.++.|+++||+|||+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888999999999999999999999998888888877777788888899999999999888888888999
Q ss_pred hhccccccchhhhHHH-HHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHHHHH-hhccccCCh
Q psy13206 114 GEISGAKCRGALSTFF-IGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVVFLM-TFIWMPESP 174 (478)
Q Consensus 114 ~E~~p~~~Rg~~~~~~-~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~~~~-~~~~~pESp 174 (478)
.|..|++.||...+.. +....+|..+++.++.. .+++..+.......++..+ .+...||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999877763 55555666655555432 2344444444433333333 233455543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 478 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 4e-16 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-08 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 78.2 bits (191), Expect = 4e-16
Identities = 48/412 (11%), Positives = 114/412 (27%), Gaps = 28/412 (6%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIIS----WLLVIFTKH 87
+ + + +S I + + +G + D + L L + T
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 88 VYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV 147
+ V++V+ F+ G G+ + + K RG + + + N G + + +
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL-FLL 174
Query: 148 DYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLE 207
+ + + + + + + + +K E
Sbjct: 175 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQE 234
Query: 208 LSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFART 267
L+ + ++ + + L + I V + + +
Sbjct: 235 LTAKQIFMQYVLP--------------NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVK 280
Query: 268 EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSE 327
+L L T ++ D+ R F + + Y++
Sbjct: 281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA 340
Query: 328 NYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVIS 387
N + G L+ E P G A G T + +
Sbjct: 341 G--------NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 392
Query: 388 FLVMK-MYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQE 438
+ + D +G F + G I+ +L+ ++ K + +QE
Sbjct: 393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 53.2 bits (126), Expect = 3e-08
Identities = 39/407 (9%), Positives = 99/407 (24%), Gaps = 35/407 (8%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVL 91
++ +++ + + I L +L+ G L D +G + LL ++ + +L
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 92 YVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVDYDT 151
+ + GI A +
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM-------------F 146
Query: 152 LAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNI 211
+ + + F + ++L + A F S+
Sbjct: 147 GCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVAN------- 199
Query: 212 KQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSL 271
S + L + I + +S FA E
Sbjct: 200 -AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGT 258
Query: 272 ITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTV 331
T + +L F +++R G + LL++ + + +
Sbjct: 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-------- 310
Query: 332 DLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVT-TITLTVISFLV 390
+ + ++ + + L F V + +
Sbjct: 311 -----SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365
Query: 391 MKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQ 437
+ + + G + + L + ++ F + + + Q
Sbjct: 366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.19 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.9 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2e-31 Score=263.42 Aligned_cols=364 Identities=15% Similarity=0.155 Sum_probs=229.7
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK----HVYVLYVVRFMQGLAMGIV 105 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~----~~~~l~~~R~l~G~~~g~~ 105 (478)
.++|+.|.||+.|++.+++.+++++.|+++||+|||+++.++.++.+++++++++++ +++.++++|++.|++.|..
T Consensus 54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 133 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 133 (447)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHT
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhh
Confidence 588999999999999999999999999999999999999999999999999998874 7789999999999999999
Q ss_pred hhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCC-----ccchhhHHHHHHHHHHHH-HHhhccccCChHHHHH
Q psy13206 106 FTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP-----YVDYDTLAYVSLVIPVVF-LMTFIWMPESPYFLIM 179 (478)
Q Consensus 106 ~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~-----~~~~~~~~~~~~~~~~~~-~~~~~~~pESp~~l~~ 179 (478)
.+....++.|++|+++||++.++.+....+|..+++.++. ..+||+.+++...+.++. ++.+.+++|+|+....
T Consensus 134 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (447)
T d1pw4a_ 134 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL 213 (447)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC
T ss_pred hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhccc
Confidence 9999999999999999999999999999988877765543 346787766655544443 3445556777643211
Q ss_pred cCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhcc-chhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHH
Q psy13206 180 KGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKL-SDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLP 258 (478)
Q Consensus 180 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (478)
.... +. +++..+ +.++..+++... +...+..++++ ..+...... ............
T Consensus 214 ~~~~--------------~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~ 270 (447)
T d1pw4a_ 214 PPIE--------------EY-KNDYPD---DYNEKAEQELTAKQIFMQYVLPNK----LLWYIAIAN-VFVYLLRYGILD 270 (447)
T ss_dssp CSCT--------------TT-CCC----------------CCTHHHHHHTSSCH----HHHHHHHHH-HHHHHHHHHHHH
T ss_pred chhh--------------hh-hhhccc---chhhccccccchhhHHHHHHHcCc----hHHHHHHHh-hhhhhhhhcchh
Confidence 1000 00 000000 000011111111 11222222221 111111111 111222333444
Q ss_pred hHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccc
Q psy13206 259 YASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFN 337 (478)
Q Consensus 259 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 337 (478)
+.+..+.+..+ +.........+..+..+++.++.+++.||++||+..........+.......+.... ....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 343 (447)
T d1pw4a_ 271 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP-------AGNP 343 (447)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC-------TTCH
T ss_pred hhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcc-------cccH
Confidence 55555444332 212233444556677788999999999999998765544443333322222211110 1111
Q ss_pred hHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy13206 338 WIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVIS-FLVMKMYQVICDHYGVYLNFYIYSLGCII 416 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~-~i~~~~~~~l~~~~g~~~~~~~~~~~~~l 416 (478)
+...+.....+ +...+..+..+.+..|.+|++.||++.|+.+..+++++ .++|.+.+.+.+..|....+++.++..++
T Consensus 344 ~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 422 (447)
T d1pw4a_ 344 TVDMICMIVIG-FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 422 (447)
T ss_dssp HHHHHHHHHHH-HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 22222222221 12223345566788999999999999999999988854 55788889999999887777776666665
Q ss_pred HHHHhhee
Q psy13206 417 CGVLVYFI 424 (478)
Q Consensus 417 ~~~~~~~~ 424 (478)
..++.+++
T Consensus 423 ~~~~~~~~ 430 (447)
T d1pw4a_ 423 AVILLIVV 430 (447)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=5.9e-24 Score=206.05 Aligned_cols=372 Identities=11% Similarity=0.039 Sum_probs=216.8
Q ss_pred eeecchhhhhhhcccccccCCCcccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHh
Q psy13206 6 MGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT 85 (478)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a 85 (478)
.+...|.+|.+.++ ++++|+.|.|++.+++.+++.++++++|+++||+|||++++++..+..++..+.++.
T Consensus 23 ~~~~~~~l~~~l~~---------~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~ 93 (417)
T d1pv7a_ 23 MGAYFPFFPIWLHD---------INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93 (417)
T ss_dssp HHHHHHHHHHHHHH---------HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 34445666664432 468899999999999999999999999999999999999999999999998888887
Q ss_pred hhHHH----HHHHHHHHhhhhhhhhhhhhhhhhhccccc--cchhhhHHHHHHHHHhHHHHhhcCCc---cchhhHHHHH
Q psy13206 86 KHVYV----LYVVRFMQGLAMGIVFTVAPMYIGEISGAK--CRGALSTFFIGMLNTGILLEYTVGPY---VDYDTLAYVS 156 (478)
Q Consensus 86 ~~~~~----l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~l~~~~g~~---~~~~~~~~~~ 156 (478)
.+... .++.+.+.|.+.+...........+..+++ ++.+..+........+..+++.++.. ..|+..++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 173 (417)
T d1pv7a_ 94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLG 173 (417)
T ss_dssp THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccch
Confidence 66554 455666666666666666555555444433 33344444555555555555554432 2334343333
Q ss_pred HH-HHHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchh
Q psy13206 157 LV-IPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANR 235 (478)
Q Consensus 157 ~~-~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (478)
.. ..+...+.....+|+|+....+ ++.. . ++++.......+..+.+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~--------------------~~~~~~~~~~~~~~~~~~~~ 223 (417)
T d1pv7a_ 174 SGCALILAVLLFFAKTDAPSSATVA---NAVG-------A--------------------NHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHHHHHHHHHSSCCCSCSSSCSS---HHHH-------S--------------------CCCCCCHHHHHHHTTSSHHH
T ss_pred hhHHHHHHHHHHHHhcccccchhhh---hhhh-------h--------------------hccccccccccccccccccc
Confidence 33 3334445555667766311000 0000 0 00000011111222222112
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCC-CC---chhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHH
Q psy13206 236 RSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSL-IT---PDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFG 311 (478)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~ 311 (478)
............ ................... .. .........+...++..+.+++.||.|||+.+..+.++
T Consensus 224 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~ 298 (417)
T d1pv7a_ 224 FLSLYVIGVSCT-----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHH
T ss_pred chhhhhHHHHHH-----HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHH
Confidence 111111111110 1111111111111111100 01 11223334556667888899999999999998888777
Q ss_pred HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHH-HHHHHHHHHH
Q psy13206 312 SGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTT-ITLTVISFLV 390 (478)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~-~~~~lg~~i~ 390 (478)
.++..+.+.. . ...+........+++.++. ..+....+.+|.+|++.|+++.++.. ....+|..++
T Consensus 299 ~~~~~~~~~~----~--------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 365 (417)
T d1pv7a_ 299 MSVRIIGSSF----A--------TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp HHHHHHHHHT----C--------CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHhhhcccc----c--------cccchhhHHHHHHHHHHHH-HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7666554321 1 1112222222223333222 23556678899999999999999865 5567899999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCCCCHH
Q psy13206 391 MKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFA 434 (478)
Q Consensus 391 ~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~~~ 434 (478)
|.+.+.+.+..|....+++.++..++..++.++.+++++..++.
T Consensus 366 ~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 99999999999987788888877777777777777777666553
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=3.4e-11 Score=116.79 Aligned_cols=151 Identities=11% Similarity=0.043 Sum_probs=102.2
Q ss_pred CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHH
Q psy13206 270 SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAV 349 (478)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (478)
+..+.........++..+++++.|+++||+|||+++..+.++.+++.++.+.......+ .+...+.....++
T Consensus 57 s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~ 128 (447)
T d1pw4a_ 57 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--------IAVMFVLLFLCGW 128 (447)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS--------SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhh--------HHHHHHHHHHHHH
Confidence 33344444555667777899999999999999999999988888776665432211110 1111112122222
Q ss_pred HHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHhheeecCC
Q psy13206 350 IYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHY-GVYLNFYIYSLGCIICGVLVYFIIPES 428 (478)
Q Consensus 350 ~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~-g~~~~~~~~~~~~~l~~~~~~~~~pEt 428 (478)
+.+ ...+....+.+|.+|++.|+++.++.+....+|..+++.+.+.+.... ++...+++.+....+.+++.+++++|+
T Consensus 129 ~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 129 FQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHH-HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred hhh-hhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence 222 223455678899999999999999999999999999988887766655 455667777777777777776766665
Q ss_pred C
Q psy13206 429 K 429 (478)
Q Consensus 429 ~ 429 (478)
+
T Consensus 208 ~ 208 (447)
T d1pw4a_ 208 P 208 (447)
T ss_dssp S
T ss_pred h
Confidence 4
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=8.8e-10 Score=104.70 Aligned_cols=133 Identities=11% Similarity=0.152 Sum_probs=108.7
Q ss_pred ccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhh
Q psy13206 31 EMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAP 110 (478)
Q Consensus 31 ~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~ 110 (478)
+.+....+...+...++..++..+.+++.||+|||+.+.++.++..++.++..+.++.+.+++.-++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34555677888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccchhhhHHH-HHHHHHhHHHHhhcC----CccchhhHHHHHHHHHHHH
Q psy13206 111 MYIGEISGAKCRGALSTFF-IGMLNTGILLEYTVG----PYVDYDTLAYVSLVIPVVF 163 (478)
Q Consensus 111 ~~~~E~~p~~~Rg~~~~~~-~~~~~~G~~l~~~~g----~~~~~~~~~~~~~~~~~~~ 163 (478)
.++.|..|+++||...+.. +....+|..+++.++ ...+++..+++...+.++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~ 392 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 9999999999999988764 344556655555443 2345666665544444443
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