Psyllid ID: psy13246

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMINWSGIKPNPIITLVTHL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHccccccEEEEEcccccEEEEEEEEccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEcccccccccEEEEEcc
Coil and Loop (DISEMBL)
MVRVNVLSDALKSINNAekrgkrqvliRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMInwsgikpnpIITLVTHL
Flexible Loop (DISEMBL)
MVRVNVLSDALksinnaekrgkrqvlirpcSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMInwsgikpnpiiTLVTHL
Low Complexity Region (SEG)
MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMINWSGIKPNPIITLVTHL
Disordered region (IsUnstruct)
**********************RQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMINWSGIKPNPIITLV***
Disordered Region (DISOPRED)
*VRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMINWSGIKPNPIITLVTHL
Disordered Region (DISEMBL)
MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMINWSGIKPNPIITLVTHL
Disordered Region (DISPRO)
**RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMINWSGIKPNPIITLVTHL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCMINWSGIKPNPIITLVTHL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
P62246	130	40S ribosomal protein S15	yes	N/A	0.654	0.407	0.830	2e-18
P62245	130	40S ribosomal protein S15	yes	N/A	0.654	0.407	0.830	2e-18
P62244	130	40S ribosomal protein S15	yes	N/A	0.654	0.407	0.830	2e-18
Q76I82	130	40S ribosomal protein S15	yes	N/A	0.654	0.407	0.830	2e-18
Q5R938	130	40S ribosomal protein S15	yes	N/A	0.654	0.407	0.830	2e-18
Q6XIM8	130	40S ribosomal protein S15	N/A	N/A	0.827	0.515	0.661	2e-17
P48149	130	40S ribosomal protein S15	yes	N/A	0.827	0.515	0.661	2e-17
Q7KR04	130	40S ribosomal protein S15	yes	N/A	0.654	0.407	0.773	3e-17
Q90YQ8	130	40S ribosomal protein S15	N/A	N/A	0.654	0.407	0.792	7e-17
P33095	130	40S ribosomal protein S15	yes	N/A	0.654	0.407	0.735	1e-14

>sp|P62246|RS15A_RAT 40S ribosomal protein S15a OS=Rattus norvegicus GN=Rps15a PE=1 SV=2

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 49/53 (92%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVI 53
          MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E  +I
Sbjct: 1  MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEII 53

Rattus norvegicus (taxid: 10116)

>sp|P62245|RS15A_MOUSE 40S ribosomal protein S15a OS=Mus musculus GN=Rps15a PE=2 SV=2

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 49/53 (92%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVI 53
          MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E  +I
Sbjct: 1  MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEII 53

Mus musculus (taxid: 10090)

>sp|P62244|RS15A_HUMAN 40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 49/53 (92%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVI 53
          MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E  +I
Sbjct: 1  MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEII 53

Homo sapiens (taxid: 9606)

>sp|Q76I82|RS15A_BOVIN 40S ribosomal protein S15a OS=Bos taurus GN=RPS15A PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 49/53 (92%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVI 53
          MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E  +I
Sbjct: 1  MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEII 53

Bos taurus (taxid: 9913)

>sp|Q5R938|RS15A_PONAB 40S ribosomal protein S15a OS=Pongo abelii GN=RPS15A PE=2 SV=1

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 49/53 (92%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVI 53
          MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E  +I
Sbjct: 1  MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEII 53

Pongo abelii (taxid: 9601)

>sp|Q6XIM8|RS15A_DROYA 40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 55/68 (80%), Gaps = 1/68 (1%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
          MVR+NVL+DALK INNAEKRGKRQVL+RPCSKVI+KFLTVMMKHG + E F I+    + 
Sbjct: 1  MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGE-FEIVDDHRSG 59

Query: 61 YCMINWSG 68
            ++N +G
Sbjct: 60 KIVVNLTG 67

Drosophila yakuba (taxid: 7245)

>sp|P48149|RS15A_DROME 40S ribosomal protein S15Aa OS=Drosophila melanogaster GN=RpS15Aa PE=2 SV=2

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 55/68 (80%), Gaps = 1/68 (1%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
          MVR+NVL+DALK INNAEKRGKRQVL+RPCSKVI+KFLTVMMKHG + E F I+    + 
Sbjct: 1  MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGE-FEIVDDHRSG 59

Query: 61 YCMINWSG 68
            ++N +G
Sbjct: 60 KIVVNLTG 67

Drosophila melanogaster (taxid: 7227)

>sp|Q7KR04|RS15B_DROME 40S ribosomal protein S15Ab OS=Drosophila melanogaster GN=RpS15Ab PE=2 SV=3

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 48/53 (90%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVI 53
          MVR+NVL+DALK INNAEKRGKRQVL+RPCSKVI+KFLTVMMKHG + E  ++
Sbjct: 1  MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIV 53

Drosophila melanogaster (taxid: 7227)

>sp|Q90YQ8|RS15A_ICTPU 40S ribosomal protein S15a OS=Ictalurus punctatus GN=rps15a PE=2 SV=3

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 47/53 (88%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVI 53
          MVR+NVL+DALK INNAEKRGK QVLIRPCSKVIV+FLTVMMKHG + E  +I
Sbjct: 1  MVRMNVLADALKCINNAEKRGKAQVLIRPCSKVIVRFLTVMMKHGYIGEFEII 53

Ictalurus punctatus (taxid: 7998)

>sp|P33095|RS15A_STRPU 40S ribosomal protein S15a OS=Strongylocentrotus purpuratus GN=RPS15A PE=2 SV=3

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 45/53 (84%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVI 53
          MVR+NVL+DAL+SI NAEKR KRQVLIRPCSKV VKFL VMMKHG + E  ++
Sbjct: 1  MVRMNVLADALRSICNAEKRCKRQVLIRPCSKVTVKFLMVMMKHGYIGEFEIV 53

Strongylocentrotus purpuratus (taxid: 7668)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
392332458	151	PREDICTED: 40S ribosomal protein S15a-li	0.827	0.443	0.705	1e-17
110671418	130	putative ribosomal protein S15A [Diaphor	0.654	0.407	0.867	2e-17
62083449	130	ribosomal protein S15A [Lysiphlebus test	0.827	0.515	0.720	2e-17
332374812	130	unknown [Dendroctonus ponderosae]	0.827	0.515	0.720	3e-17
91090057	130	PREDICTED: similar to ribosomal protein	0.827	0.515	0.705	4e-17
264667377	130	ribosomal protein S15A [Chrysomela tremu	0.827	0.515	0.705	4e-17
156544938	130	PREDICTED: 40S ribosomal protein S15a-li	0.827	0.515	0.705	5e-17
322790861	131	hypothetical protein SINV_12532 [Solenop	0.827	0.511	0.705	5e-17
307189014	130	40S ribosomal protein S15a [Camponotus f	0.827	0.515	0.705	5e-17
307214885	130	40S ribosomal protein S15a [Harpegnathos	0.827	0.515	0.705	5e-17

>gi|392332458|ref|XP_003752587.1| PREDICTED: 40S ribosomal protein S15a-like [Rattus norvegicus] gi|392352179|ref|XP_002727968.2| PREDICTED: 40S ribosomal protein S15a-like [Rattus norvegicus]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
          MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E F I+G     
Sbjct: 22 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGE-FEIIGDHRAG 80

Query: 61 YCMINWSG 68
            ++N +G
Sbjct: 81 KIVVNLAG 88

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|110671418|gb|ABG81960.1| putative ribosomal protein S15A [Diaphorina citri]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/53 (86%), Positives = 49/53 (92%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVI 53
          MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG + E  ++
Sbjct: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIV 53

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62083449|gb|AAX62449.1| ribosomal protein S15A [Lysiphlebus testaceipes]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
          MVR+NVLSDALKSINNAEKRGKRQVL+RPCSKVIVKFLTVMMKHG + E F I+    + 
Sbjct: 1  MVRMNVLSDALKSINNAEKRGKRQVLLRPCSKVIVKFLTVMMKHGYIGE-FEIVDDHRSG 59

Query: 61 YCMINWSG 68
            ++N SG
Sbjct: 60 KIVVNLSG 67

Source: Lysiphlebus testaceipes

Species: Lysiphlebus testaceipes

Genus: Lysiphlebus

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374812|gb|AEE62547.1| unknown [Dendroctonus ponderosae]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
          MVR+NVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG + E F I+    + 
Sbjct: 1  MVRMNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGE-FEIVDDHRSG 59

Query: 61 YCMINWSG 68
            ++N +G
Sbjct: 60 KIVVNLTG 67

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090057|ref|XP_968917.1| PREDICTED: similar to ribosomal protein S15Ae [Tribolium castaneum] gi|270013522|gb|EFA09970.1| hypothetical protein TcasGA2_TC012128 [Tribolium castaneum]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
          MVR+NVLSDALKSINNAEKRGKRQVLIRPCSKVI+KFLTVMMKHG + E F I+    + 
Sbjct: 1  MVRMNVLSDALKSINNAEKRGKRQVLIRPCSKVIIKFLTVMMKHGYIGE-FEIVDDHRSG 59

Query: 61 YCMINWSG 68
            ++N +G
Sbjct: 60 KIVVNLTG 67

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|264667377|gb|ACY71274.1| ribosomal protein S15A [Chrysomela tremula]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
          MVR+NVLSDALKSINNAEKRGKRQVLIRPCSKV+VKFLTVMMKHG + E F I+    + 
Sbjct: 1  MVRMNVLSDALKSINNAEKRGKRQVLIRPCSKVVVKFLTVMMKHGYIGE-FEIVDDHRSG 59

Query: 61 YCMINWSG 68
            ++N +G
Sbjct: 60 KIVVNLTG 67

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544938|ref|XP_001607263.1| PREDICTED: 40S ribosomal protein S15a-like [Nasonia vitripennis]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
          MVR+NVLSDALKSINNAEKRGKRQVL+RPCSKVIVKFLTVMMKHG + E F I+    + 
Sbjct: 1  MVRMNVLSDALKSINNAEKRGKRQVLLRPCSKVIVKFLTVMMKHGYIGE-FEIVDDHRSG 59

Query: 61 YCMINWSG 68
            ++N +G
Sbjct: 60 KVVVNLTG 67

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790861|gb|EFZ15546.1| hypothetical protein SINV_12532 [Solenopsis invicta]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
          MVR+NVLSDALKSINNAEKRGKRQVL+RPCSKVIVKFLTVMMKHG + E F I+    + 
Sbjct: 2  MVRMNVLSDALKSINNAEKRGKRQVLLRPCSKVIVKFLTVMMKHGYIGE-FEIVDDHRSG 60

Query: 61 YCMINWSG 68
            ++N +G
Sbjct: 61 KVVVNLTG 68

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189014|gb|EFN73531.1| 40S ribosomal protein S15a [Camponotus floridanus]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
          MVR+NVLSDALKSINNAEKRGKRQVL+RPCSKVIVKFLTVMMKHG + E F I+    + 
Sbjct: 1  MVRMNVLSDALKSINNAEKRGKRQVLLRPCSKVIVKFLTVMMKHGYIGE-FEIVDDHRSG 59

Query: 61 YCMINWSG 68
            ++N +G
Sbjct: 60 KVVVNLTG 67

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214885|gb|EFN89753.1| 40S ribosomal protein S15a [Harpegnathos saltator]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
          MVR+NVLSDALKSINNAEKRGKRQVL+RPCSKVIVKFLTVMMKHG + E F I+    + 
Sbjct: 1  MVRMNVLSDALKSINNAEKRGKRQVLLRPCSKVIVKFLTVMMKHGYIGE-FEIVDDHRSG 59

Query: 61 YCMINWSG 68
            ++N +G
Sbjct: 60 KVVVNLTG 67

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
RGD|2318744	130	Rps15al2 "ribosomal protein S1	0.827	0.515	0.705	5.1e-19
UNIPROTKB|F1NXW3	136	RPS15A "Uncharacterized protei	0.827	0.492	0.691	2.8e-18
UNIPROTKB|Q76I82	130	RPS15A "40S ribosomal protein	0.827	0.515	0.691	2.8e-18
UNIPROTKB|E2RPP2	237	RPS15A "Uncharacterized protei	0.827	0.282	0.691	2.8e-18
UNIPROTKB|J9P798	130	RPS15A "Uncharacterized protei	0.827	0.515	0.691	2.8e-18
UNIPROTKB|H3BN98	237	H3BN98 "Uncharacterized protei	0.827	0.282	0.691	2.8e-18
UNIPROTKB|I3L246	111	RPS15A "40S ribosomal protein	0.827	0.603	0.691	2.8e-18
UNIPROTKB|I3L3P7	100	RPS15A "40S ribosomal protein	0.827	0.67	0.691	2.8e-18
UNIPROTKB|P62244	130	RPS15A "40S ribosomal protein	0.827	0.515	0.691	2.8e-18
RGD|619939	130	Rps15a "ribosomal protein S15a	0.827	0.515	0.691	2.8e-18

RGD|2318744 Rps15al2 "ribosomal protein S15A-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/68 (70%), Positives = 56/68 (82%)

Query:     1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
             MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E F I+G     
Sbjct:     1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGE-FEIIGDHRAG 59

Query:    61 YCMINWSG 68
               ++N +G
Sbjct:    60 KIVVNLAG 67

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1NXW3 RPS15A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 47/68 (69%), Positives = 55/68 (80%)

Query:     1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
             MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E F I+      
Sbjct:     7 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGE-FEIIDDHRAG 65

Query:    61 YCMINWSG 68
               ++N +G
Sbjct:    66 KIVVNLTG 73

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0045787 "positive regulation of cell cycle" evidence=IEA

UNIPROTKB|Q76I82 RPS15A "40S ribosomal protein S15a" [Bos taurus (taxid:9913)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 47/68 (69%), Positives = 55/68 (80%)

Query:     1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
             MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E F I+      
Sbjct:     1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGE-FEIIDDHRAG 59

Query:    61 YCMINWSG 68
               ++N +G
Sbjct:    60 KIVVNLTG 67

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RPP2 RPS15A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 47/68 (69%), Positives = 55/68 (80%)

Query:     1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
             MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E F I+      
Sbjct:   167 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGE-FEIIDDHRAG 225

Query:    61 YCMINWSG 68
               ++N +G
Sbjct:   226 KIVVNLTG 233

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J9P798 RPS15A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 47/68 (69%), Positives = 55/68 (80%)

Query:     1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
             MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E F I+      
Sbjct:     1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGE-FEIIDDHRAG 59

Query:    61 YCMINWSG 68
               ++N +G
Sbjct:    60 KIVVNLTG 67

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|H3BN98 H3BN98 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 47/68 (69%), Positives = 55/68 (80%)

Query:     1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
             MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E F I+      
Sbjct:   167 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGE-FEIIDDHRAG 225

Query:    61 YCMINWSG 68
               ++N +G
Sbjct:   226 KIVVNLTG 233

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|I3L246 RPS15A "40S ribosomal protein S15a" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 47/68 (69%), Positives = 55/68 (80%)

Query:     1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
             MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E F I+      
Sbjct:     1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGE-FEIIDDHRAG 59

Query:    61 YCMINWSG 68
               ++N +G
Sbjct:    60 KIVVNLTG 67

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|I3L3P7 RPS15A "40S ribosomal protein S15a" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 47/68 (69%), Positives = 55/68 (80%)

Query:     1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
             MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E F I+      
Sbjct:     1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGE-FEIIDDHRAG 59

Query:    61 YCMINWSG 68
               ++N +G
Sbjct:    60 KIVVNLTG 67

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|P62244 RPS15A "40S ribosomal protein S15a" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 47/68 (69%), Positives = 55/68 (80%)

Query:     1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
             MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E F I+      
Sbjct:     1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGE-FEIIDDHRAG 59

Query:    61 YCMINWSG 68
               ++N +G
Sbjct:    60 KIVVNLTG 67

GO:0005739 "mitochondrion" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=NAS;IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;NAS;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009615 "response to virus" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0045787 "positive regulation of cell cycle" evidence=IDA

GO:0003723 "RNA binding" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

RGD|619939 Rps15a "ribosomal protein S15a" [Rattus norvegicus (taxid:10116)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 47/68 (69%), Positives = 55/68 (80%)

Query:     1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
             MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E F I+      
Sbjct:     1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGE-FEIIDDHRAG 59

Query:    61 YCMINWSG 68
               ++N +G
Sbjct:    60 KIVVNLTG 67

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0009615 "response to virus" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

GO:0045787 "positive regulation of cell cycle" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q76I82	RS15A_BOVIN	No assigned EC number	0.8301	0.6543	0.4076	yes	N/A
P33095	RS15A_STRPU	No assigned EC number	0.7358	0.6543	0.4076	yes	N/A
O14469	RS22_SCHPO	No assigned EC number	0.7142	0.6049	0.3769	yes	N/A
Q3E7Y3	RS22B_YEAST	No assigned EC number	0.6206	0.7160	0.4461	yes	N/A
Q9LX88	R15A4_ARATH	No assigned EC number	0.7142	0.6049	0.3769	yes	N/A
Q7KR04	RS15B_DROME	No assigned EC number	0.7735	0.6543	0.4076	yes	N/A
P62244	RS15A_HUMAN	No assigned EC number	0.8301	0.6543	0.4076	yes	N/A
P62245	RS15A_MOUSE	No assigned EC number	0.8301	0.6543	0.4076	yes	N/A
P62246	RS15A_RAT	No assigned EC number	0.8301	0.6543	0.4076	yes	N/A
Q6FMW9	RS22_CANGA	No assigned EC number	0.6206	0.7160	0.4461	yes	N/A
P0C0W1	RS22A_YEAST	No assigned EC number	0.6379	0.7160	0.4461	yes	N/A
Q5R938	RS15A_PONAB	No assigned EC number	0.8301	0.6543	0.4076	yes	N/A
P46793	RS15A_DICDI	No assigned EC number	0.5862	0.7160	0.4461	yes	N/A
P42798	R15A1_ARATH	No assigned EC number	0.7346	0.6049	0.3769	yes	N/A
P48149	RS15A_DROME	No assigned EC number	0.6617	0.8271	0.5153	yes	N/A
Q752J5	RS22_ASHGO	No assigned EC number	0.6379	0.7160	0.4461	yes	N/A
Q6CW21	RS22_KLULA	No assigned EC number	0.6379	0.7160	0.4461	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	81
PTZ00158	130	PTZ00158, PTZ00158, 40S ribosomal protein S15A; Pr	1e-24
PLN00146	130	PLN00146, PLN00146, 40S ribosomal protein S15a; Pr	4e-22
PRK04034	130	PRK04034, rps8p, 30S ribosomal protein S8P; Review	8e-13
COG0096	132	COG0096, RpsH, Ribosomal protein S8 [Translation,	1e-08
pfam00410	129	pfam00410, Ribosomal_S8, Ribosomal protein S8	2e-08

>gnl|CDD|185487 PTZ00158, PTZ00158, 40S ribosomal protein S15A; Provisional

 Score = 88.6 bits (220), Expect = 1e-24
 Identities = 35/53 (66%), Positives = 44/53 (83%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVI 53
          MVR++VL+D L+SI NAEK+GKRQVLIRP SKV+VKFL VM KHG + E  ++
Sbjct: 1  MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIV 53

Length = 130

>gnl|CDD|215075 PLN00146, PLN00146, 40S ribosomal protein S15a; Provisional

 Score = 82.4 bits (204), Expect = 4e-22
 Identities = 34/45 (75%), Positives = 40/45 (88%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          MVR +VL+DALK++ NAEKRGKRQVLIRP SKV++KFL VM KHG
Sbjct: 1  MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHG 45

Length = 130

>gnl|CDD|179721 PRK04034, rps8p, 30S ribosomal protein S8P; Reviewed

 Score = 58.3 bits (142), Expect = 8e-13
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          MV ++ L++AL +I NAE  GK++V+I+P SK+I   L VM   G
Sbjct: 1  MVLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEG 45

Length = 130

>gnl|CDD|223174 COG0096, RpsH, Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]

 Score = 47.9 bits (115), Expect = 1e-08
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          M+  + L+D L  I NAE+  K++V+  P SK+    L V+ K G
Sbjct: 1  MMMTDPLADMLTRIRNAERA-KKEVVSMPASKLKGAILKVLKKEG 44

Length = 132

>gnl|CDD|215906 pfam00410, Ribosomal_S8, Ribosomal protein S8

 Score = 47.1 bits (113), Expect = 2e-08
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 5  NVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          + ++D L  I NA+   K  VLI P SK+ +  L ++ + G
Sbjct: 1  DPIADMLTRIRNAQMAKKETVLI-PASKLKISILKILKEEG 40

Length = 129

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
COG0096	132	RpsH Ribosomal protein S8 [Translation, ribosomal	99.95
PTZ00158	130	40S ribosomal protein S15A; Provisional	99.94
KOG1754|consensus	130		99.93
PLN00146	130	40S ribosomal protein S15a; Provisional	99.92
PRK04034	130	rps8p 30S ribosomal protein S8P; Reviewed	99.91
CHL00042	132	rps8 ribosomal protein S8	99.88
PRK00136	130	rpsH 30S ribosomal protein S8; Validated	99.84
PF00410	129	Ribosomal_S8: Ribosomal protein S8; InterPro: IPR0	99.8
PF09639	88	YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a	85.59

>COG0096 RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=9.9e-29  Score=169.17  Aligned_cols=74  Identities=34%  Similarity=0.375  Sum_probs=70.3

Q ss_pred             CCccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC-Cccccc
Q psy13246          1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG-IKPNPI   74 (81)
Q Consensus         1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g-i~pr~~   74 (81)
                      |+++|||||||||||||++++|+.|. .|+||++.+||++|++||||++|++++|++++.++|     +|.|| |+|+..
T Consensus         1 m~~~DpiAdmltrIrNa~~~~~~~v~-~P~SKl~~~il~vLk~eGYI~~f~~~~~~~~~~~~v~Lky~~n~~~vI~~~~r   79 (132)
T COG0096           1 MMMTDPLADMLTRIRNAERAKKEVVS-MPASKLKGAILKVLKKEGYIKDFEVIDDGRKGKLRVQLKYRINGCGVISPIKR   79 (132)
T ss_pred             CccccHHHHHHHHhHhHHHhccceee-cchHHHHHHHHHHHHHcCCcceEEEEeCCcceEEEEEEEeccCCCccccccee
Confidence            88899999999999999999888887 999999999999999999999999999999999999     89999 999876


Q ss_pred             e
Q psy13246         75 I   75 (81)
Q Consensus        75 ~   75 (81)
                      +
T Consensus        80 V   80 (132)
T COG0096          80 V   80 (132)
T ss_pred             c
Confidence            5

>PTZ00158 40S ribosomal protein S15A; Provisional

Probab=99.94  E-value=4.5e-27  Score=160.34  Aligned_cols=75  Identities=53%  Similarity=0.744  Sum_probs=68.9

Q ss_pred             CCccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC-Cccccc
Q psy13246          1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG-IKPNPI   74 (81)
Q Consensus         1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g-i~pr~~   74 (81)
                      |+.+||||||||+||||++++|++|.++|+||++.+||+||++||||++|++.++++.+.+.|     |++|| |+||.-
T Consensus         1 m~~~~~iadmlt~IrNa~~~~~~~V~v~p~Skl~~~il~IL~~eGyI~~~~~~~~~~~~~i~v~l~~rIsk~g~IS~RvY   80 (130)
T PTZ00158          1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD   80 (130)
T ss_pred             CCcccHHHHHHHhhhhHHhCCCCeEEEeCCcHHHHHHHHHHHHCCcccceEEEecCCEEEEEEEEcCccccCCCCccceE
Confidence            888999999999999999999999984499999999999999999999999988877777766     99999 999875


Q ss_pred             e
Q psy13246         75 I   75 (81)
Q Consensus        75 ~   75 (81)
                      .
T Consensus        81 ~   81 (130)
T PTZ00158         81 V   81 (130)
T ss_pred             C
Confidence            4

>KOG1754|consensus

Probab=99.93  E-value=7.7e-26  Score=153.99  Aligned_cols=77  Identities=62%  Similarity=0.839  Sum_probs=73.7

Q ss_pred             CCccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC-Cccccc
Q psy13246          1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG-IKPNPI   74 (81)
Q Consensus         1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g-i~pr~~   74 (81)
                      |+.+|.+||+|+.|+||.++||.||.+.|+||...+||.+|++||||++|++++|++.|++.|     +|+|| |+|||-
T Consensus         1 m~~~~vLaDalksinNA~krGK~qvlirp~Skvii~FL~vmmkhGyIg~fei~ddhragkivv~L~gRlNkcg~Isprfd   80 (130)
T KOG1754|consen    1 MVRMNVLADALKSINNAEKRGKRQVLIRPSSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD   80 (130)
T ss_pred             CchHHHHHHHHHHhhhHHhcCCceEEecccHHHHHHHHHHHHHcCcccceEEecCCccceEEEecccccccccccccccc
Confidence            778999999999999999999999999999999999999999999999999999999999988     99999 999997


Q ss_pred             eee
Q psy13246         75 ITL   77 (81)
Q Consensus        75 ~~~   77 (81)
                      +-+
T Consensus        81 V~l   83 (130)
T KOG1754|consen   81 VKL   83 (130)
T ss_pred             ccc
Confidence            643

>PLN00146 40S ribosomal protein S15a; Provisional

Probab=99.92  E-value=1.5e-25  Score=152.32  Aligned_cols=75  Identities=55%  Similarity=0.746  Sum_probs=68.4

Q ss_pred             CCccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC-Cccccc
Q psy13246          1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG-IKPNPI   74 (81)
Q Consensus         1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g-i~pr~~   74 (81)
                      |+.+||||||||+||||++++|++|.++|+||++.+|+++|++||||++|+..++++.+.+.|     ||+|+ |+||.-
T Consensus         1 m~~~~~iad~lt~IrNa~~a~~~~v~~~p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~~i~~~~~IS~Rvy   80 (130)
T PLN00146          1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFD   80 (130)
T ss_pred             CCCcChHHHHHHHhHhHHHcCCCeEEEEcChHHHHHHHHHHHHCCCCcceEEEecCCcceEEEEEcccccCCcEEEcCEe
Confidence            888999999999999999999999975799999999999999999999999887776667766     89999 999875


Q ss_pred             e
Q psy13246         75 I   75 (81)
Q Consensus        75 ~   75 (81)
                      .
T Consensus        81 ~   81 (130)
T PLN00146         81 V   81 (130)
T ss_pred             c
Confidence            4

>PRK04034 rps8p 30S ribosomal protein S8P; Reviewed

Probab=99.91  E-value=8.3e-25  Score=148.17  Aligned_cols=74  Identities=41%  Similarity=0.525  Sum_probs=66.7

Q ss_pred             CCccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC-Cccccc
Q psy13246          1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG-IKPNPI   74 (81)
Q Consensus         1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g-i~pr~~   74 (81)
                      |+++||||||||+||||++|++++|..+|+||++.+||++|++||||++|++.++++.+.+.|     +|+|. ||||.-
T Consensus         1 m~~~d~iad~lt~IrNa~~a~~~~v~~~p~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~~v~Lk~~~~~~~~IkPRvy   80 (130)
T PRK04034          1 MVLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEYIDDGRAGKFKVELLGRINKCGAIKPRYP   80 (130)
T ss_pred             CCcccHHHHHHHHhHhHHHcCCceEEEEcccHHHHHHHHHHHHCCCceEEEEEcCCCccceEEEECCccCCCCcCCCCeE
Confidence            777899999999999999999999866999999999999999999999999887776666666     78899 999764

>CHL00042 rps8 ribosomal protein S8

Probab=99.88  E-value=1.7e-22  Score=137.38  Aligned_cols=60  Identities=17%  Similarity=0.243  Sum_probs=55.5

Q ss_pred             ccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE
Q psy13246          3 RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM   63 (81)
Q Consensus         3 ~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V   63 (81)
                      ++||||||||+||||++++|.+|. +|+||++.+||++|++||||++|++.++++.+.+.|
T Consensus         2 ~~d~iad~lt~IrNa~~a~~~~v~-ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~i~v   61 (132)
T CHL00042          2 GNDTIADMLTRIRNANMVKKGTVR-IPATNITENIVKILLREGFIENVREHRENNKYFLVL   61 (132)
T ss_pred             CcchHHHHHHHhHHHHHCCCCEEE-EeccHHHHHHHHHHHHCCcccceEEEecCCeeEEEE
Confidence            489999999999999999999998 799999999999999999999999887777767665

>PRK00136 rpsH 30S ribosomal protein S8; Validated

Probab=99.84  E-value=6.7e-21  Score=128.96  Aligned_cols=61  Identities=20%  Similarity=0.243  Sum_probs=55.3

Q ss_pred             CccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE
Q psy13246          2 VRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM   63 (81)
Q Consensus         2 ~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V   63 (81)
                      +++||||||||+||||+++||.+|. +|+||++.+||++|++||||++|+..++++.++++|
T Consensus         1 m~~d~i~d~lt~IrNa~~~~~~~v~-ip~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~~v   61 (130)
T PRK00136          1 SMTDPIADMLTRIRNAQMAKHETVS-MPASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRI   61 (130)
T ss_pred             CCcChHHHHHHHHHHHHHcCCCeEE-ecccHHHHHHHHHHHHCCcccceEEEecCCcceEEE
Confidence            1489999999999999999999998 999999999999999999999999887666566666

>PF00410 Ribosomal_S8: Ribosomal protein S8; InterPro: IPR000630 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.80  E-value=2.4e-19  Score=120.60  Aligned_cols=70  Identities=27%  Similarity=0.320  Sum_probs=61.4

Q ss_pred             chHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCcc-ceEEE--------------EecCC-
Q psy13246          5 NVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRT-TVYCM--------------INWSG-   68 (81)
Q Consensus         5 D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~-~~i~V--------------in~~g-   68 (81)
                      |||||+|++||||++++|++|. +|+|+++.++|++|++||||++|++.+++++ +.+.|              |+.|. 
T Consensus         1 D~lad~l~~I~Na~~~~~~~v~-ip~sk~~~~il~iL~~eGyI~~f~~~~~~~~~~~i~I~Lky~~~~~~~i~~i~~iSk   79 (129)
T PF00410_consen    1 DPLADLLTRIRNASRARKRFVI-IPYSKLNLSILKILKKEGYISGFEIIDDNRNGKRIWIELKYRRNGKPVIKKIKRISK   79 (129)
T ss_dssp             SHHHHHHHHHHHHHHTTCSEEE-EEHCHHHHHHHHHHHHTTSEEEEEEEESSSSEEEEEEEESBCSSSSBSSSEEEESSB
T ss_pred             CcHHHHHHHhHHHHHCCCCEEE-ecccHHHHHHHHHHhhccccceeEeeccCCCceEEEEEEccccccchhhhhhhcccC
Confidence            9999999999999999999998 7999999999999999999999999888875 45666              55666 


Q ss_pred             Cccccce
Q psy13246         69 IKPNPII   75 (81)
Q Consensus        69 i~pr~~~   75 (81)
                      ..+|+-+
T Consensus        80 p~~r~y~   86 (129)
T PF00410_consen   80 PGRRVYI   86 (129)
T ss_dssp             TTCCCEE
T ss_pred             CCcceec
Confidence            6666544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S8 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S8 is known to bind directly to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups eubacterial, algal and plant chloroplast, cyanelle, archaebacterial and Marchantia polymorpha mitochondrial S8; mammalian and plant S15A; and yeast S22 (S24) ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1S1H_H 3O30_O 3O2Z_O 3IZB_H 3U5G_W 3U5C_W 3OTO_H 1AN7_A 2HGR_K 3BBN_H ....

>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx

Probab=85.59  E-value=0.45  Score=29.95  Aligned_cols=25  Identities=16%  Similarity=0.177  Sum_probs=19.3

Q ss_pred             hHHHHHHHHHHhhcCccCceEEEcC
Q psy13246         31 SKVIVKFLTVMMKHGKLPEVFVILG   55 (81)
Q Consensus        31 Skl~~~il~IL~~eGYI~~~~~~~~   55 (81)
                      +..-..+++-|+++|||+|+.+..+
T Consensus        24 ~~~~~~il~~L~d~GyI~G~~~~~~   48 (88)
T PF09639_consen   24 DSYWSDILRMLQDEGYIKGVSVVRY   48 (88)
T ss_dssp             HHHHHHHHHHHHHHTSEE--EESSS
T ss_pred             HHHHHHHHHHHHHCCCccceEEEec
Confidence            4666789999999999999988765

100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	81
2zkq_h	130	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-19
3iz6_H	130	Localization Of The Small Subunit Ribosomal Protein		4e-15
3izb_H	130	Localization Of The Small Subunit Ribosomal Protein		2e-14
1s1h_H	129	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		9e-14
3jyv_H	125	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-13
3zey_J	130	High-resolution Cryo-electron Microscopy Structure		1e-11
2xzm_H	130	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-11
3j20_I	130	Promiscuous Behavior Of Proteins In Archaeal Riboso		3e-07

>pdb|2ZKQ|HH Chain h, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 130

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 49/53 (92%)
Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVI 53
          MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHG + E  +I
Sbjct: 1  MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEII 53

>pdb|3IZ6|H Chain H, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 130

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 43/49 (87%)
Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPE 49
          MVRV+VL+DALK++ NAEKRGKRQVLIRP SKVI+KFL VM KHG + E
Sbjct: 1  MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGE 49

>pdb|3IZB|H Chain H, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 130

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 43/58 (74%)
Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRT 58
          M R +VL+DAL +INNAEK GKRQVLIRP SKVI+KFL VM KHG + E   I   R+
Sbjct: 1  MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRS 58

>pdb|1S1H|H Chain H, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 129

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 42/56 (75%)
Query: 3  RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRT 58
          R +VL+DAL +INNAEK GKRQVLIRP SKVI+KFL VM KHG + E   I   R+
Sbjct: 2  RSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRS 57

>pdb|3JYV|H Chain H, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 125

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 40/53 (75%)
Query: 6  VLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRT 58
          +L+DAL +INNAEK GKRQVLIRP SKVI+KFL VM KHG + E   I   R+
Sbjct: 1  LLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRS 53

>pdb|3ZEY|J Chain J, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 130

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 41/53 (77%)
Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVI 53
          M  ++VL++AL+ I  AE+RGKRQVLIRP SKV+VKFL VM KHG + E  ++
Sbjct: 1  MTMMSVLANALRCIAGAERRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIV 53

>pdb|2XZM|H Chain H, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 130

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 44/58 (75%)
Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRT 58
          MV+VN+L++ LK + NAEK GK+QVL+RP SKV++KFL +M K+G + E  VI   R+
Sbjct: 1  MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRS 58

>pdb|3J20|I Chain I, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 130

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTV 60
          M  ++ L++AL  I N+E+ GKR+V I+P SK+I + L VM K+G + E   I   R  V
Sbjct: 1  MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
Query: 61 Y-----CMINWSG-IKP 71
          Y       IN +G IKP
Sbjct: 61 YRVQLLGRINKAGAIKP 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	81
3u5c_W	130	40S ribosomal protein S22-A; translation, ribosome	2e-18
1i6u_A	130	30S ribosomal protein S8P; protein-RNA interaction	1e-17
2xzm_H	130	Ribosomal protein S8 containing protein; ribosome,	6e-17

>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h Length = 130

 Score = 72.1 bits (178), Expect = 2e-18
 Identities = 34/45 (75%), Positives = 38/45 (84%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          M R +VL+DAL +INNAEK GKRQVLIRP SKVI+KFL VM KHG
Sbjct: 1  MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHG 45

>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1 Length = 130

 Score = 70.2 bits (173), Expect = 1e-17
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          M  ++ L++AL  I+N E+ GK+ V I+P SK+I + L VM  +G
Sbjct: 1  MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNG 45

>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H Length = 130

 Score = 68.7 bits (169), Expect = 6e-17
 Identities = 27/45 (60%), Positives = 38/45 (84%)

Query: 1  MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          MV+VN+L++ LK + NAEK GK+QVL+RP SKV++KFL +M K+G
Sbjct: 1  MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNG 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
3u5c_W	130	40S ribosomal protein S22-A; translation, ribosome	99.95
2xzm_H	130	Ribosomal protein S8 containing protein; ribosome,	99.95
1i6u_A	130	30S ribosomal protein S8P; protein-RNA interaction	99.95
1sei_A	130	Ribosomal protein S8; prokaryotic, rRNA-binding; 1	99.92
3bbn_H	134	Ribosomal protein S8; small ribosomal subunit, spi	99.92
2vqe_H	138	30S ribosomal protein S8, 30S ribosomal protein S6	99.91
1s03_H	129	30S ribosomal protein S8; protein-RNA complex, SPC	99.91
3rf2_A	168	30S ribosomal protein S8; RNA-binding protein, hyp	99.88
2hgc_A	102	YJCQ protein; SR346, structure, autostructure, NES	82.41

>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h

Probab=99.95  E-value=9.2e-29  Score=167.07  Aligned_cols=75  Identities=55%  Similarity=0.724  Sum_probs=70.0

Q ss_pred             CCccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC-Cccccc
Q psy13246          1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG-IKPNPI   74 (81)
Q Consensus         1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g-i~pr~~   74 (81)
                      |+.+|+||||||+||||++++|++|.+.|+||++.+||++|++||||++|++++|++++++.|     +|+|| |+||+-
T Consensus         1 m~~~d~iad~lt~IrNA~~~~~~~v~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~r~~k~~~ISpR~y   80 (130)
T 3u5c_W            1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFN   80 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTTCSEEEECSCCHHHHHHHHHHHTTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCB
T ss_pred             CCcccHHHHHHHHhHHHHHcCCceEEEecCCHHHHHHHHHHHHCCCccceeeeccCCCceEEEEEccccCCCCeEEccee
Confidence            888999999999999999999999985599999999999999999999999999999999988     89999 999975


Q ss_pred             e
Q psy13246         75 I   75 (81)
Q Consensus        75 ~   75 (81)
                      .
T Consensus        81 ~   81 (130)
T 3u5c_W           81 V   81 (130)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H

Probab=99.95  E-value=1.2e-28  Score=166.53  Aligned_cols=75  Identities=48%  Similarity=0.693  Sum_probs=69.1

Q ss_pred             CCccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC-Cccccc
Q psy13246          1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG-IKPNPI   74 (81)
Q Consensus         1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g-i~pr~~   74 (81)
                      |+++||||||||+||||++++|++|.+.|+||++.+||++|++||||++|+++++++++++.|     ||+|+ |+||+-
T Consensus         1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~y   80 (130)
T 2xzm_H            1 MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRSKKVVVELIGRINKCGVISPRYD   80 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHTSSCCEEEECCSSSCEEEEECCSCCCCEEECTTCCB
T ss_pred             CCccCHHHHHHHHhHHHHHcCCCEEEEEcchHHHHHHHHHHHHCCCcceEEEEecCCceEEEEEEecccccCcEEECcee
Confidence            888999999999999999999999983399999999999999999999999999888888888     99999 999975


Q ss_pred             e
Q psy13246         75 I   75 (81)
Q Consensus        75 ~   75 (81)
                      .
T Consensus        81 ~   81 (130)
T 2xzm_H           81 V   81 (130)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1

Probab=99.95  E-value=1.8e-28  Score=165.68  Aligned_cols=74  Identities=36%  Similarity=0.499  Sum_probs=69.0

Q ss_pred             CCccchHHHHHHHhhhHhhcCCceEEEE-echHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC-Ccccc
Q psy13246          1 MVRVNVLSDALKSINNAEKRGKRQVLIR-PCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG-IKPNP   73 (81)
Q Consensus         1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~-p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g-i~pr~   73 (81)
                      |+++||||||||+||||++++|++|. + |+||++.+||++|++||||++|+++++++++++.|     ||+|+ |+||+
T Consensus         1 M~~~d~iad~lt~IrNA~~~~~~~V~-i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~   79 (130)
T 1i6u_A            1 MSLMDPLANALNHISNCERVGKKVVY-IKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRF   79 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTTCSEEE-ESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCC
T ss_pred             CCccCHHHHHHHHhHHHHHcCCCEEE-EECchHHHHHHHHHHHHCCccccEEEEecCCceEEEEEEeeecccCCEEECCe
Confidence            88899999999999999999999998 6 99999999999999999999999998888888888     99999 99997


Q ss_pred             ce
Q psy13246         74 II   75 (81)
Q Consensus        74 ~~   75 (81)
                      -.
T Consensus        80 y~   81 (130)
T 1i6u_A           80 PV   81 (130)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1

Probab=99.92  E-value=1.6e-25  Score=151.28  Aligned_cols=60  Identities=17%  Similarity=0.249  Sum_probs=57.1

Q ss_pred             ccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE
Q psy13246          3 RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM   63 (81)
Q Consensus         3 ~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V   63 (81)
                      ++||||||||+||||++++|++|. +|+||++.+||++|++||||++|+++++++++.+.|
T Consensus         2 ~~d~iad~lt~IrNA~~~~~~~v~-iP~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v   61 (130)
T 1sei_A            2 MTDPIADMLTAIRNANMVRHEKLE-VPASKIKREIAEILKREGFIRDYEYIEDNKQGILRI   61 (130)
T ss_dssp             CSHHHHHHHHHHHHHHHTTCSEEE-EECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEE
T ss_pred             ccChHHHHHHHhHHHHHcCCCEEE-ecCcHHHHHHHHHHHHCCCceeEEEEecCCccEEEE
Confidence            589999999999999999999998 799999999999999999999999988887788887

>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.92  E-value=4.4e-25  Score=149.96  Aligned_cols=67  Identities=10%  Similarity=0.119  Sum_probs=63.0

Q ss_pred             ccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcC-CccceEEE----EecCC-Ccc
Q psy13246          3 RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILG-IRTTVYCM----INWSG-IKP   71 (81)
Q Consensus         3 ~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~-~~~~~i~V----in~~g-i~p   71 (81)
                      ++||||||||+||||++++|++|. +|+||++.+||++|++||||++|+++++ ++ +++.|    .|+|+ |+|
T Consensus         2 ~~d~iad~lt~IrNA~~~~k~~V~-iP~Sk~~~~il~iL~~eGyI~~~~~~~~~~~-~~i~v~Lky~~~~~vI~p   74 (134)
T 3bbn_H            2 GKDTIADIITCIRNADMNRKGTVR-IVSTNITENIVKILLREGFIENARKHQERNK-YFLVLTLRHRRNKKGPYL   74 (134)
T ss_dssp             CSCHHHHHHHHHHHHHHTTCSEEE-EECCHHHHHHTHHHHTTTSSSCEEEEESSSC-EEEEEECCBCCCSSSCCB
T ss_pred             cccHHHHHHHHhHHHHHcCCCEEE-EeCcHHHHHHHHHHHHCCcceeEEEEecCCC-cEEEEEEecCCCCceeec
Confidence            489999999999999999999998 7999999999999999999999999888 77 78888    78999 997

>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...

Probab=99.91  E-value=5.9e-25  Score=149.93  Aligned_cols=69  Identities=16%  Similarity=0.127  Sum_probs=63.5

Q ss_pred             CccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----Eec-------CC-
Q psy13246          2 VRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INW-------SG-   68 (81)
Q Consensus         2 ~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~-------~g-   68 (81)
                      .++||||||||+||||++++|++|. +|+||++.+||++|++||||++|++.++++++.+.|     .|+       |+ 
T Consensus         1 m~~d~iad~ltrIrNA~~~~k~~V~-iP~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~~~~~~~~~~~v   79 (138)
T 2vqe_H            1 MLTDPIADMLTRIRNATRVYKESTD-VPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQV   79 (138)
T ss_dssp             CCSCHHHHHHHHHHHHHHTTCSCCC-CBCCHHHHHHHHHHHHTTSSSEEEEEEETTEEEEEEECCBCCCCSSSCCCCCBS
T ss_pred             CccchHHHHHHHhHHHHHcCCCEEE-ecCcHHHHHHHHHHHHcCcceeEEEEecCCceEEEEEEecCcCCccccccCCcc
Confidence            1489999999999999999999998 899999999999999999999999988887788888     677       99 


Q ss_pred             Ccc
Q psy13246         69 IKP   71 (81)
Q Consensus        69 i~p   71 (81)
                      |+|
T Consensus        80 I~~   82 (138)
T 2vqe_H           80 IHH   82 (138)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            886

>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...

Probab=99.91  E-value=1.2e-24  Score=146.81  Aligned_cols=67  Identities=21%  Similarity=0.267  Sum_probs=59.2

Q ss_pred             ccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE----EecCC-Ccc
Q psy13246          3 RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM----INWSG-IKP   71 (81)
Q Consensus         3 ~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V----in~~g-i~p   71 (81)
                      ++||||||||+||||++++|++|. +|+||++.+||++|++||||++|++ ++++++.+.|    .|+|+ |+|
T Consensus         2 ~~d~iad~lt~IrNA~~~~~~~v~-iP~Sk~~~~il~iL~~eGyI~~~~~-~~~~~~~i~v~Lky~~~~~vI~~   73 (129)
T 1s03_H            2 MQDPIADMLTRIRNGQAANKAAVT-MPSSKLKVAIANVLKEEGFIEDFKV-EGDTKPELELTLKYFQGKAVVES   73 (129)
T ss_dssp             -CCHHHHHHHHHHHHHHTTCSEEE-EECCHHHHHHHHHHHHTTSEEEEEE-ECSSSCEEEEEECBSSSSBSCSC
T ss_pred             CcChHHHHHHHhHHHHHcCCCEEE-EeCcHHHHHHHHHHHHCCcceeEEE-cCCCceEEEEEEecCCCCccccc
Confidence            589999999999999999999998 7999999999999999999999998 6777778888    45555 554

>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus}

Probab=99.88  E-value=2.5e-23  Score=146.05  Aligned_cols=55  Identities=27%  Similarity=0.361  Sum_probs=50.3

Q ss_pred             CCccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCC
Q psy13246          1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGI   56 (81)
Q Consensus         1 M~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~   56 (81)
                      |+++||||||||+||||++++|.+|. +|+||++.+|+++|++||||++|++.+++
T Consensus         1 m~~~d~iad~lt~IrNA~~ar~~~v~-iP~Skl~~~i~~iL~~eGyI~~~~~~~~~   55 (168)
T 3rf2_A            1 MSAVDPIADMFSAIKNAIMRRDDFLY-VPSSKLKERILDVLKKEGFIQDWEALKGE   55 (168)
T ss_dssp             ---CCHHHHHHHHHHHHHHTTCSEEE-EECCHHHHHHHHHHHHHTSEEEEEECCHH
T ss_pred             CCcccHHHHHHHHHHHHHHcCCCEEE-ecccHHHHHHHHHHHHCCCccceEEecCC
Confidence            88899999999999999999999998 89999999999999999999999998776

>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77

Probab=82.41  E-value=0.47  Score=30.35  Aligned_cols=23  Identities=9%  Similarity=0.033  Sum_probs=19.6

Q ss_pred             HHHHHHHHHhhcCccCceEEEcC
Q psy13246         33 VIVKFLTVMMKHGKLPEVFVILG   55 (81)
Q Consensus        33 l~~~il~IL~~eGYI~~~~~~~~   55 (81)
                      .-..+++.|+++|||.+..+.++
T Consensus        32 ~~~~il~~L~d~GyI~Gv~~~~~   54 (102)
T 2hgc_A           32 QFDDAVNFLKREGYIIGVHYSDD   54 (102)
T ss_dssp             HHHHHHHHHHHHTSEECCEESSS
T ss_pred             HHHHHHHHHHHCCCccceEEEeC
Confidence            34679999999999999988766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	81
d1i6ua_	129	d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Meth	3e-11
d1seia_	130	d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stea	8e-08
d2gy9h1	126	d.140.1.1 (H:3-128) Ribosomal protein S8 {Escheric	2e-07
d1an7a_	136	d.140.1.1 (A:) Ribosomal protein S8 {Thermus therm	3e-06

>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 52.6 bits (126), Expect = 3e-11
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 5  NVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          + L++AL  I+N E+ GK+ V I+P SK+I + L VM  +G
Sbjct: 4  DPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNG 44

>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]} Length = 130

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.1 bits (104), Expect = 8e-08
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 7  LSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          ++D L +I NA      ++ + P SK+  +   ++ + G
Sbjct: 6  IADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREG 43

>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (100), Expect = 2e-07
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 7  LSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          ++D L  I N +   K  V + P SK+ V    V+ + G
Sbjct: 4  IADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEG 41

>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]} Length = 136

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Thermus thermophilus [TaxId: 274]

 Score = 40.0 bits (93), Expect = 3e-06
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 7  LSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHG 45
          ++D L  I NA +  K    + P S+   + L ++ + G
Sbjct: 4  IADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREG 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d1i6ua_	129	Ribosomal protein S8 {Archaeon Methanococcus janna	99.94
d1seia_	130	Ribosomal protein S8 {Bacillus stearothermophilus	99.92
d1an7a_	136	Ribosomal protein S8 {Thermus thermophilus [TaxId:	99.88
d2gy9h1	126	Ribosomal protein S8 {Escherichia coli [TaxId: 562	99.85

>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=2.2e-27  Score=158.28  Aligned_cols=74  Identities=36%  Similarity=0.521  Sum_probs=67.5

Q ss_pred             CccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC-Cccccce
Q psy13246          2 VRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG-IKPNPII   75 (81)
Q Consensus         2 ~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g-i~pr~~~   75 (81)
                      +|+|||||||||||||++++|++|.+.|+||++.+||++|++||||++|++.++++++.++|     .|.|+ |+|+.-+
T Consensus         1 sm~D~iaD~ltrIrNA~~~~~~~V~i~P~Skl~~~Il~iL~~eGyI~~~~~~~~~~~~~i~i~L~~~~~~~~~I~~~~~v   80 (129)
T d1i6ua_           1 SLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFPV   80 (129)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCEE
T ss_pred             CCccHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHHHHHHHHhhhccccCCCceeEEEecccccCccccceEee
Confidence            46899999999999999999999983399999999999999999999999999988888877     78888 9988754

>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=1e-25  Score=149.16  Aligned_cols=70  Identities=19%  Similarity=0.197  Sum_probs=62.7

Q ss_pred             CccchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCCCccc
Q psy13246          2 VRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSGIKPN   72 (81)
Q Consensus         2 ~~~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~gi~pr   72 (81)
                      +|+||||||||+||||+++||++|. +|+||++.++|++|++||||++|+++++++++.+.|     .|+|.|+|+
T Consensus         1 vm~D~iaD~lt~IrNA~~a~k~~V~-ip~Skl~~~il~vL~~eGyI~~f~~~~~~~~~~i~v~Lk~~~~~~~i~~~   75 (130)
T d1seia_           1 VMTDPIADMLTAIRNANMVRHEKLE-VPASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPNERVITGL   75 (130)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTCSEEE-EECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEEEECBSSSSBSCCCE
T ss_pred             CccchHHHHHHHHHHHHHcCCCEEE-ecCcHHHHHHHHHHHHhcccceeEEeeccCCceEEEEecccCCccccccc
Confidence            3589999999999999999999998 799999999999999999999999999999888888     445555543

>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=2.1e-23  Score=138.33  Aligned_cols=72  Identities=18%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             cchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCC--Ccccccee
Q psy13246          4 VNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSG--IKPNPIIT   76 (81)
Q Consensus         4 ~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~g--i~pr~~~~   76 (81)
                      +|||||||++||||+++||++|. +|+||++.+||++|++||||++|+++++++.+.+.+     +|.|+  ..|++.|.
T Consensus         1 tD~iaD~lt~IrNA~~~~k~~v~-ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~   79 (136)
T d1an7a_           1 TDPIADMLTRIRNATRVYKESTD-VPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIH   79 (136)
T ss_dssp             CCHHHHHHHHHHHHHTTTCSEEE-EECCHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEECEEEECSSSCCSEEESCC
T ss_pred             CCcHHHHHHHHHhHHHcCCCEEE-ecccHHHHHHHHHHHHCCcccceEEeccCCcceeeeeeehhhhcccCCCCCCcccc
Confidence            69999999999999999999998 899999999999999999999999999887766555     66666  45554443

>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.9e-22  Score=131.59  Aligned_cols=69  Identities=19%  Similarity=0.192  Sum_probs=58.1

Q ss_pred             cchHHHHHHHhhhHhhcCCceEEEEechHHHHHHHHHHhhcCccCceEEEcCCccceEEE-----EecCCCccccc
Q psy13246          4 VNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGKLPEVFVILGIRTTVYCM-----INWSGIKPNPI   74 (81)
Q Consensus         4 ~D~iaD~LtrIrNA~~a~k~~V~~~p~Skl~~~il~IL~~eGYI~~~~~~~~~~~~~i~V-----in~~gi~pr~~   74 (81)
                      +|||||||++||||+++||++|. +|+||++.+||++|++||||++|++.++++ +.+.|     .|++.|+|+..
T Consensus         1 qD~iaD~l~~I~NA~~~~k~~v~-ip~Skl~~~il~iL~~eGyI~~f~~~~~~k-~~i~i~Lky~~~k~vI~~~~~   74 (126)
T d2gy9h1           1 QDPIADMLTRIRNGQAANKAAVT-MPSSKLKVAIANVLKEEGFIEDFKVEGDTK-PELELTLKYFQGKAVVESIQR   74 (126)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEC-CBCCHHHHHHHHHHHHHTSEEEEEEECSSS-CEEEEEECCCSSSCSCSCCEE
T ss_pred             CCcHHHHHHHhHhHHHcCCCEEE-eeCcHHHHHHHHHHHhcCcccccEEecCCC-ceEEEEEeccCCCEEEecceE
Confidence            59999999999999999999998 799999999999999999999999877654 56666     23333665543