Psyllid ID: psy13312

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MSDESLDDGTATMVPRRENLNIINVTQLDKDSILVCYGKSSGLEPITCLQAQSIYQESKFTLSLESI
Secondary Structure (PSIPRED)
ccccccccccEEEEEcccccEEEEEEEEcccEEEEEEccEEEEEEcccccccccEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccHHccEEEEEEEEcccEEEEEEccccccEEEEEEEcccEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
msdeslddgtatmvprrenlniinvtqldkdsilvcygkssglepitclqAQSIYQESKFTLSLESI
Flexible Loop (DISEMBL)
msdeslddgtatmvprrenlniinvtqldkDSILVCYGKSSGLEPITCLQAQSIYQESKFTLSLESI
Low Complexity Region (SEG)
MSDESLDDGTATMVPRRENLNIINVTQLDKDSILVCYGKSSGLEPITCLQAQSIYQESKFTLSLESI
Disordered region (IsUnstruct)
******************NLNIINVTQLDKDSILVCYGKSSGLEPITCLQAQSIYQ***********
Disordered Region (DISOPRED)
*********TATMVPRRENLNIINVTQLDKDSILVCYGKSSGLEPITCLQAQSIYQESKFTLSLESI
Disordered Region (DISEMBL)
**********ATMVPRRENLNIINVTQLDKDSILVCYGKSSGLEPITCLQAQSIYQESK********
Disordered Region (DISPRO)
********GTATMVPRRENLNIINVTQLDKDSILVCYGKSSGLEPITCLQAQSIYQESKFTLSLESI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSDESLDDGTATMVPRRENLNIINVTQLDKDSILVCYGKSSGLEPITCLQAQSIYQESKFTLSLESI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
189235723	761	PREDICTED: similar to mitogen-activated	0.537	0.047	0.783	2e-08
270003381	857	hypothetical protein TcasGA2_TC002609 [T	0.537	0.042	0.783	3e-08
307191886	882	Mitogen-activated protein kinase kinase	0.537	0.040	0.729	3e-07
332025920	897	Mitogen-activated protein kinase kinase	0.537	0.040	0.729	3e-07
322792326	884	hypothetical protein SINV_06196 [Solenop	0.537	0.040	0.729	8e-07
307171171	897	Mitogen-activated protein kinase kinase	0.537	0.040	0.729	8e-07
340717282	901	PREDICTED: mitogen-activated protein kin	0.537	0.039	0.702	2e-06
340717284	896	PREDICTED: mitogen-activated protein kin	0.537	0.040	0.702	2e-06
350407772	900	PREDICTED: mitogen-activated protein kin	0.537	0.04	0.702	2e-06
380030704	900	PREDICTED: mitogen-activated protein kin	0.537	0.04	0.702	2e-06

>gi|189235723|ref|XP_001807436.1| PREDICTED: similar to mitogen-activated protein kinase kinase kinase kinase 2-like [Tribolium castaneum]

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/37 (78%), Positives = 34/37 (91%), Gaps = 1/37 (2%)

Query: 2   SDESLD-DGTATMVPRRENLNIINVTQLDKDSILVCY 37
           SDE  D DGTAT++P+RENLNI+NVTQLDKDSIL+CY
Sbjct: 618 SDELQDMDGTATVIPKRENLNIVNVTQLDKDSILICY 654

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003381|gb|EEZ99828.1| hypothetical protein TcasGA2_TC002609 [Tribolium castaneum]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 34/37 (91%), Gaps = 1/37 (2%)

Query: 2   SDESLD-DGTATMVPRRENLNIINVTQLDKDSILVCY 37
           SDE  D DGTAT++P+RENLNI+NVTQLDKDSIL+CY
Sbjct: 714 SDELQDMDGTATVIPKRENLNIVNVTQLDKDSILICY 750

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191886|gb|EFN75305.1| Mitogen-activated protein kinase kinase kinase kinase 5 [Harpegnathos saltator]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%), Gaps = 1/37 (2%)

Query: 2   SDESLD-DGTATMVPRRENLNIINVTQLDKDSILVCY 37
           SDE  D DG+AT++PRRENLN+INVTQ +KD+ILVCY
Sbjct: 739 SDELEDMDGSATVIPRRENLNVINVTQFEKDAILVCY 775

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025920|gb|EGI66076.1| Mitogen-activated protein kinase kinase kinase kinase 5 [Acromyrmex echinatior]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%), Gaps = 1/37 (2%)

Query: 2   SDESLD-DGTATMVPRRENLNIINVTQLDKDSILVCY 37
           SDE  D DG+AT++PRRENLN+INVTQ +KD+ILVCY
Sbjct: 754 SDELEDMDGSATVIPRRENLNVINVTQFEKDAILVCY 790

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322792326|gb|EFZ16310.1| hypothetical protein SINV_06196 [Solenopsis invicta]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%), Gaps = 1/37 (2%)

Query: 2   SDESLD-DGTATMVPRRENLNIINVTQLDKDSILVCY 37
           SDE  D DG+AT++PRRENLN+INVTQ +KD ILVCY
Sbjct: 741 SDELEDMDGSATVIPRRENLNVINVTQFEKDVILVCY 777

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171171|gb|EFN63158.1| Mitogen-activated protein kinase kinase kinase kinase 3 [Camponotus floridanus]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%), Gaps = 1/37 (2%)

Query: 2   SDESLD-DGTATMVPRRENLNIINVTQLDKDSILVCY 37
           SDE  D DG+AT++PRRENLN+INVTQ +KD ILVCY
Sbjct: 754 SDELEDIDGSATVIPRRENLNVINVTQFEKDVILVCY 790

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717282|ref|XP_003397114.1| PREDICTED: mitogen-activated protein kinase kinase kinase kinase 5-like isoform 1 [Bombus terrestris]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 34/37 (91%), Gaps = 1/37 (2%)

Query: 2   SDESLD-DGTATMVPRRENLNIINVTQLDKDSILVCY 37
           SDE  D DG+AT++PRRENL++INVTQL+K++ILVCY
Sbjct: 757 SDELEDMDGSATVIPRRENLHVINVTQLEKNAILVCY 793

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717284|ref|XP_003397115.1| PREDICTED: mitogen-activated protein kinase kinase kinase kinase 5-like isoform 2 [Bombus terrestris]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 34/37 (91%), Gaps = 1/37 (2%)

Query: 2   SDESLD-DGTATMVPRRENLNIINVTQLDKDSILVCY 37
           SDE  D DG+AT++PRRENL++INVTQL+K++ILVCY
Sbjct: 752 SDELEDMDGSATVIPRRENLHVINVTQLEKNAILVCY 788

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407772|ref|XP_003488189.1| PREDICTED: mitogen-activated protein kinase kinase kinase kinase 3-like [Bombus impatiens]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 34/37 (91%), Gaps = 1/37 (2%)

Query: 2   SDESLD-DGTATMVPRRENLNIINVTQLDKDSILVCY 37
           SDE  D DG+AT++PRRENL++INVTQL+K++ILVCY
Sbjct: 757 SDELEDMDGSATVIPRRENLHVINVTQLEKNAILVCY 793

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030704|ref|XP_003698983.1| PREDICTED: mitogen-activated protein kinase kinase kinase kinase 5-like [Apis florea]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 34/37 (91%), Gaps = 1/37 (2%)

Query: 2   SDESLD-DGTATMVPRRENLNIINVTQLDKDSILVCY 37
           SDE  D DG+AT++PRRENL++INVTQL+K++ILVCY
Sbjct: 757 SDELEDMDGSATVIPRRENLHVINVTQLEKNAILVCY 793

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
FB|FBgn0263395	1218	hppy "happyhour" [Drosophila m	0.522	0.028	0.583	0.00011

FB|FBgn0263395 hppy "happyhour" [Drosophila melanogaster (taxid:7227)]

 Score = 107 (42.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 21/36 (58%), Positives = 28/36 (77%)

Query:     4 ESLD-DGTATMVPRRENLNIINVTQLDKDSILVCYG 38
             E L+ D  ATMVPRR+ L ++ V Q++KD+ILVCYG
Sbjct:  1077 EDLEYDAMATMVPRRDLLKVVRVHQVEKDAILVCYG 1112


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.129   0.350    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       67        67   0.00091  102 3  11 23  0.47    28
                                                     29  0.49    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  427 (46 KB)
  Total size of DFA:  74 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.69u 0.07s 7.76t   Elapsed:  00:00:06
  Total cpu time:  7.69u 0.07s 7.76t   Elapsed:  00:00:07
  Start:  Thu Aug 15 11:50:35 2013   End:  Thu Aug 15 11:50:42 2013

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IGI;NAS

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IGI

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IGI

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IGI

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0070328 "triglyceride homeostasis" evidence=IMP

GO:0040009 "regulation of growth rate" evidence=IMP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0032006 "regulation of TOR signaling cascade" evidence=IGI

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0031931 "TORC1 complex" evidence=IPI

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IGI

GO:0046330 "positive regulation of JNK cascade" evidence=IMP

GO:0006915 "apoptotic process" evidence=IDA

GO:0007254 "JNK cascade" evidence=IDA

GO:0007030 "Golgi organization" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	67
pfam00780	266	pfam00780, CNH, CNH domain	0.003

>gnl|CDD|216115 pfam00780, CNH, CNH domain

 Score = 33.4 bits (77), Expect = 0.003
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 5   SLDDGTATMVPRRENLNIINVTQLDKDSILVCY 37
              D +     R+ENL  + V +L  D  L+CY
Sbjct: 165 DPADQSLDFAARKENLKPLAVVRLSDDEFLLCY 197

Domain found in NIK1-like kinase, mouse citron and yeast ROM1, ROM2. Unpublished observations. Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
KOG0576|consensus	829		99.54
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	97.73
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.89

>KOG0576|consensus

Probab=99.54  E-value=3.7e-15  Score=121.29  Aligned_cols=62  Identities=24%  Similarity=0.348  Sum_probs=56.2

Q ss_pred             cCCCcceeecCCCccceEEEEeccCCeEEEEeCCeEEEEcCcceecc--cceeeeeeeeeeccC
Q psy13312          6 LDDGTATMVPRRENLNIINVTQLDKDSILVCYGKSSGLEPITCLQAQ--SIYQESKFTLSLESI   67 (67)
Q Consensus         6 ~~~g~~t~~~~~~~l~vv~VtQLdrDtvLVc~d~~VkiVnl~G~~~~--kl~sel~FdF~IEsi   67 (67)
                      +.|.+..+..+++++.+++|+|+|+|+||||+||+||+||+||+++.  +++|||+|||.|||+
T Consensus       694 ~~~~~w~~~~~~~~~~v~~v~qvdrd~I~v~~~n~V~~v~lqG~~~~~~~~~sel~f~f~iesv  757 (829)
T KOG0576|consen  694 NSDSSWDIEAAGETLPVPQVTQVDRDTILVLFENMVKIVNLQGNGKVAVKLLSELTFDFDIESV  757 (829)
T ss_pred             ccccccceeccCcccCCceeEEecccceEeeecCeeEEEeccCCccccccccccccccCCcceE
Confidence            36667788889999999999999999999999999999999997554  789999999999985

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=97.73  E-value=4.9e-05  Score=55.11  Aligned_cols=45  Identities=22%  Similarity=0.284  Sum_probs=38.5

Q ss_pred             ceEEEEeccCCeEEEEeCCeEEEEcCcceecccceeeeeeeeeecc
Q psy13312         21 NIINVTQLDKDSILVCYGKSSGLEPITCLQAQSIYQESKFTLSLES   66 (67)
Q Consensus        21 ~vv~VtQLdrDtvLVc~d~~VkiVnl~G~~~~kl~sel~FdF~IEs   66 (67)
                      +++.+.||+++.+|+|||+++.+||.+|. ...+..++.|++..++
T Consensus       204 ~p~~i~~l~~~e~Llc~~~~~v~Vn~~G~-~~~r~~~l~w~~~p~~  248 (302)
T smart00036      204 KPISVVQVPRDEFLLCYDEFGVFVNLYGK-RRSRNPILHWEFMPES  248 (302)
T ss_pred             CceEEEEECCCeEEEEECcEEEEEeCCCC-ccccceEEEcCCcccE
Confidence            79999999999999999999999999994 2344678888887665

Unpublished observations.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.89  E-value=0.0017  Score=44.46  Aligned_cols=48  Identities=13%  Similarity=0.236  Sum_probs=38.2

Q ss_pred             cCCCccceEEEEeccCCeEEEEeCCeEEEEcCcceecccceeeeeeeeee
Q psy13312         15 PRRENLNIINVTQLDKDSILVCYGKSSGLEPITCLQAQSIYQESKFTLSL   64 (67)
Q Consensus        15 ~~~~~l~vv~VtQLdrDtvLVc~d~~VkiVnl~G~~~~kl~sel~FdF~I   64 (67)
                      .+.....++.+.+++++.+|+|+++..-+||.+|.+.+  .+.+.|+...
T Consensus       184 ~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r--~~~i~W~~~p  231 (275)
T PF00780_consen  184 SRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSR--KSTIQWSSAP  231 (275)
T ss_pred             hcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcCc--ccEEEcCCch
Confidence            44556778999999999999999999999999998654  3555555543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00