Psyllid ID: psy13360

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160-
MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINYNGKDKNFIKFLIKIMLLKNKNSYDIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI
ccEEEEcccccccccHHHEHHHHHccccccccccEEEEccccEEEEEEcccEEEEEEEEEEEEccccEEEEHHHHHHHHHHHccccccEEEEEEEccEEEEEccccEEEEEccccccccEEEEccccEEEEEEccHHHHHHHHHHHHHHccHHHHHHHccEEEEEEcccEEEEcccccEEEEEEEEccccccccccEEEccccHHHHHHHHHcccccEEEEEEccEEEEEEEHHHHHHHHcccccccEEEEEEccccccEEEcHHHHHHHHccEEEEEcccccEEEEEEEccEEEEEEEccccccccHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccccccEEEEEEEEccHHHHHcccccEEEEEEcccccEEEEEccccccccccccccccccccHHEEEHHHHcccccccccccccccccccccEEEcccccccEEEEEEEccEEEEEEEEcccccccccccccccccccEEEEccccccccEEEEEccccccccEEEEHHHHHHHHHHHHccccccEEEEEEcccccEEEEEEcccHHHHHHHHHccccccccccEEEcccccccccccEEEEEEEEEccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEcccccccccccccccccEEccccccccEEccccHHHccccHHHHHHHHHHccccccccccccccccccEEEEEccccccHHHHHHHHHHHHcccHHHHHcccEEEEccccccEEEccEEEEEccHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEEEEccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEcEEEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHccccccccHHHHHHHccccccccc
ccEEEEcEHHHHHHHHHHHccccccccccHHHHEEEEEEEccEEEEEEEcccEEEEEEEEcccccEcEEEEEEHHHHHHHHHHcccccEEEEEEEccEEEEEEccEEEEEEcEcHHHccEEEEcccccEEEEEEHHHHHHHHHccHHHcccccccccccEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEEEEEEcHHHHHHHHHccccccccEEEEEcccEEEEEEccEEEEEEccccccccHHHHccccccEEEEEEHHHHHHHHHHHHccccccccEEEEEEEccEEEEEEEcccccEEEEEEEcEcccccccHHHHHHHHHHHcccccccccccccccccHHHcEEccccHHHHHccHHHHccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEEEccccccccEcccEEccccEEHHHHHHHcccEEcHHHccccccccccccccHHHHHHcEEEEEEEEEEccEEEEEEEEccEEcccEEEEEccEEEcccEEEcccccccEEEEEcccHHHcccccccHHHHHHHHHHHHHHccccEEEEEEcccccEEEEccccHHHHHHHHHcccccEcccccEEEEEcEcEEEEccEEEEEEEEEEcccccEEEEEEccEEccccEHHHHHHHHHHHHHHHHHHHHccHHHHHcccccHHHHHccEEEEEEEEcccccEcccccccEccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccHccccccccccccccccccEEEEEEcccccccccccccccccEEccccccEEEEEHHHHHHHHcHHHHHHHHHHHccccccccccHHHccEEEEEEEEcccccHHHHHHHHHHHHHHHcHHHHHcccEEEEccccEEEcccccEEEEcccHHHHHHHHHHHHccccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHccHHHHHHHHHHHHHHHcccccEEEEEEcccccccEEEEEEEccccEEEEEcHHHHccHHHHHHHHHHHHHHcHcccccEEEEccccccEEEccccHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHcccHHHHHHEEEEHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccc
mqlvvnteknailhPLQMVISIVEKKNILPILSNILVcknsekisflstdTEVQITTYTAVGYGNSSINIIVAARKFIDILRslpetekvTIYIENKHMFiksgkskftlqtldakeypimtlnskydfeFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSfqkkniiavssdghrltYYQVNIdkkfsscsdiiiprkTVFTLQRLLEnkenpvelkisnnQIKIIFSNIEIISKLIdgkfldykYVISNKYEKSFLVNRNKLLRSLQRISIIsndklkgvrlvikpnYLKITVSSSNREKASEELeinyngkdkNFIKFLIKIMLlknknsydiqdtqessysasSIQILEGLEAvrkrpemyigdtsdgtglHHFVFEILDNAIDESLAGYCTKINvtiysdnsisisdngrgipidikiddkhkpkrSAAEIVMTELhaggkfnknsykisgglhgiGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTingisvspikiigdtnkqgtkihFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKeifefkggtsgfVSYINKSKLVVHPTIFQAIGNKisekknniNIDVSMQWNNSYNENILCFTnnilqvdggthltglRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVlsikipdpkfnsqtknklvsseVRKPVEEIIIKTLFDFlqenpgesKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKladcqeknpeLCELYIVEgdsaggsvkqgrdRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGigieqdefnlEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYiyiaqpplykikygnnecylrdDIEEERYMLKIAFKNVKLISIengdiikenYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYkglgemnpgqlwettmnPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI
mqlvvnteknailhpLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTavgygnssINIIVAARKFIDILRSLPETEKVTIYIENKhmfiksgkskftlQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKkfsscsdiiiPRKTVFTLQRLLENKenpvelkisnnqiKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRisiisndklkgvrlvikpnylkitvsssnrekaseeleinyngkdknFIKFLIKIMLLKNKNSYDIQDTqessysassiQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTiysdnsisisdngrgipidikiddkhkpkRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTIngisvspikiigdtnkqgTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPTIFQAIGnkisekknNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKyieeneflkkskIEIIGEDIREGLTCVLSikipdpkfnsqtknklvssevrkpVEEIIIKTLfdflqenpgeSKLICEKIIEAARsreaarktreltrkknliddielstkladcqekNPELCELYIVEGDsaggsvkqgrdrrfqavlplrgkvlniEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIImtdadidgAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDinfinnkdykKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIelnalhaknidi
MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQikiifsnieiiskliDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINYNGKDKNFIKFLIKIMLLKNKNSYDIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYsdnsisisdnGRGipidikiddkhkpkRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERikkkeifefkggTSGFVSYINKSKLVVHPTIFQAignkisekknniniDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICekiieaarsreaarktreLTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQittlistlgigiEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQlnnkyllnikkkflkkknyiiDINFINNKDYKKLVSIISTFkkiigkgviiqksigEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI
*****NTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITV************EINYNGKDKNFIKFLIKIMLLKNKNSYDI************IQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKID*********AEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDP**************VRKPVEEIIIKTLFDFLQENPGESKLICEKIIEA******************LIDDIELSTKLADCQEKNPELCELYIVEGDSA*******RDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALH******
**L****EKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLK************************NFIKF****************************QILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI
MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVS********EELEINYNGKDKNFIKFLIKIMLLKNKNSYDIQ**********SIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI
*QLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINYNGKDKNFIKFLIKIMLLKN*************YSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGD************RFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI
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MQLVVNTEKNAILHPLQMVISIVEKKNILPILSNILVCKNSEKISFLSTDTEVQITTYTAVGYGNSSINIIVAARKFIDILRSLPETEKVTIYIENKHMFIKSGKSKFTLQTLDAKEYPIMTLNSKYDFEFTLSQKTLKCILNMVYFSIAQQDIRYYLNGLLLSFQKKNIIAVSSDGHRLTYYQVNIDKKFSSCSDIIIPRKTVFTLQRLLENKENPVELKISNNQIKIIFSNIEIISKLIDGKFLDYKYVISNKYEKSFLVNRNKLLRSLQRISIISNDKLKGVRLVIKPNYLKITVSSSNREKASEELEINYNGKDKNFIKFLIKIMLLKNKNSYDIQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1161 2.2.26 [Sep-21-2011]
P22118781 DNA gyrase subunit B OS=N yes N/A 0.665 0.989 0.509 0.0
Q9KVX3805 DNA gyrase subunit B OS=V yes N/A 0.681 0.982 0.496 0.0
O51859805 DNA gyrase subunit B OS=V yes N/A 0.680 0.981 0.487 0.0
P0A2I3804 DNA gyrase subunit B OS=S yes N/A 0.680 0.982 0.483 0.0
P0A2I4804 DNA gyrase subunit B OS=S N/A N/A 0.680 0.982 0.483 0.0
P0AES8804 DNA gyrase subunit B OS=S yes N/A 0.680 0.982 0.481 0.0
P0AES6804 DNA gyrase subunit B OS=E N/A N/A 0.680 0.982 0.481 0.0
P0AES7804 DNA gyrase subunit B OS=E N/A N/A 0.680 0.982 0.481 0.0
P43701806 DNA gyrase subunit B OS=H yes N/A 0.685 0.987 0.487 0.0
P13364806 DNA gyrase subunit B OS=P yes N/A 0.683 0.985 0.489 0.0
>sp|P22118|GYRB_NEIGO DNA gyrase subunit B OS=Neisseria gonorrhoeae GN=gyrB PE=3 SV=1 Back     alignment and function desciption
 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/829 (50%), Positives = 575/829 (69%), Gaps = 56/829 (6%)

Query: 339  IQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYC 398
            + + +   Y A SIQ+LEGLEAV KRP MYIGDT DG+GLHH VFE+LDNAIDE+LAG+C
Sbjct: 1    MTEQKHEEYGADSIQVLEGLEAVPKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHC 60

Query: 399  TKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKIS 458
             KI VTI++D+S+S++DNGRG+P  I      K  RSAAE++MT LHAGGKF+ NSYKIS
Sbjct: 61   DKITVTIHADHSVSVADNGRGMPTGIH----PKEGRSAAEVIMTVLHAGGKFDNNSYKIS 116

Query: 459  GGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT 518
            GGLHG+G+S VN LS ++ LTI R+ K H++ F            + G +  P+KI+GD+
Sbjct: 117  GGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRF------------VRGETEEPLKIVGDS 164

Query: 519  NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGG 578
            +K+GT + F    + F NIE+ ++IL KRIRELSFLNNGV I L DER  K E F   GG
Sbjct: 165  DKKGTTVRFLAGTETFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGKHESFALSGG 224

Query: 579  TSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQV 638
             +GFV Y+N+ K  +H  IF A G     +K+ ++++ +MQWN+SY E++ CFTNNI Q 
Sbjct: 225  VAGFVQYMNRKKTPLHEKIFYAFG-----EKDGMSVECAMQWNDSYQESVQCFTNNIPQR 279

Query: 639  DGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQT 698
            DGGTHLT LR  +TR IN YIE NE  KK+K+E  G+D+REGLTCVLS+K+PDPKF+SQT
Sbjct: 280  DGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQT 339

Query: 699  KNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKN 758
            K+KLVS E+   V E+I + L DFL+ENP E+K+I  KI++AAR+R+AARK RE+TR+K 
Sbjct: 340  KDKLVSGEIGPVVNEVINQALTDFLEENPNEAKIITGKIVDAARARQAARKAREITRRKG 399

Query: 759  LIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKA 818
            L+D + L  KLADCQEK+P L ELY+VEG+SAGGS  QGRDR+FQA+LPL+GK+LN    
Sbjct: 400  LMDGLGLPGKLADCQEKDPALSELYLVEGNSAGGSAMQGRDRKFQAILPLKGKILN---- 455

Query: 819  RFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYR 878
                      + TLI+ LG GI ++EFN EKLRYHRIIIMTDAD+DGAHIR LLLTFFYR
Sbjct: 456  ----------VATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYR 505

Query: 879  KMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIK 938
            +MP L+E GYIYIAQPPLYK KYG  E YL+D++E+++++L +A +  K++S  +G  I+
Sbjct: 506  QMPDLVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVS--DGRTIE 563

Query: 939  ENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLN- 997
                     ++     ++ +  + +D  +L A++    ++L + ENA++   ++   L+ 
Sbjct: 564  GAELADTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSENADKAVAELSGLLDE 623

Query: 998  -DSNIEIIV-----EFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFK 1051
             ++ +E I      +F ++  K   N+   +++ K       F+N+K Y+ L    +  K
Sbjct: 624  KEAALERIEGHEGHQFIKITRKLHGNVMVSYIEPK-------FLNSKAYQTLTQTAAALK 676

Query: 1052 KIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETT 1111
             ++G+G  + K   E    Y A++F   ++ L + A+  +  QRYKGLGEMNP QLWETT
Sbjct: 677  GLVGEGAKLYKGENE----YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETT 732

Query: 1112 MNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNID 1160
            M+P +R LLKV+I+D I AD++F+TLMGD VE RR FIE NAL A+NID
Sbjct: 733  MDPTVRRLLKVRIEDRI-ADEVFVTLMGDEVEPRRAFIENNALIAQNID 780
DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.
Neisseria gonorrhoeae (taxid: 485)
EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 3
>sp|Q9KVX3|GYRB_VIBCH DNA gyrase subunit B OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=gyrB PE=3 SV=1 Back     alignment and function description
>sp|O51859|GYRB_VIBPA DNA gyrase subunit B OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=gyrB PE=3 SV=2 Back     alignment and function description
>sp|P0A2I3|GYRB_SALTY DNA gyrase subunit B OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=gyrB PE=3 SV=2 Back     alignment and function description
>sp|P0A2I4|GYRB_SALTI DNA gyrase subunit B OS=Salmonella typhi GN=gyrB PE=3 SV=2 Back     alignment and function description
>sp|P0AES8|GYRB_SHIFL DNA gyrase subunit B OS=Shigella flexneri GN=gyrB PE=3 SV=2 Back     alignment and function description
>sp|P0AES6|GYRB_ECOLI DNA gyrase subunit B OS=Escherichia coli (strain K12) GN=gyrB PE=1 SV=2 Back     alignment and function description
>sp|P0AES7|GYRB_ECO57 DNA gyrase subunit B OS=Escherichia coli O157:H7 GN=gyrB PE=3 SV=2 Back     alignment and function description
>sp|P43701|GYRB_HAEIN DNA gyrase subunit B OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=gyrB PE=3 SV=1 Back     alignment and function description
>sp|P13364|GYRB_PSEPU DNA gyrase subunit B OS=Pseudomonas putida GN=gyrB PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1161
399020745835 DNA gyrase, B subunit [Herbaspirillum sp 0.708 0.984 0.647 0.0
134093298835 DNA gyrase subunit B [Herminiimonas arse 0.715 0.995 0.641 0.0
340785200826 DNA gyrase subunit B [Collimonas fungivo 0.701 0.985 0.641 0.0
152980048832 DNA gyrase subunit B [Janthinobacterium 0.705 0.984 0.645 0.0
445499783834 DNA gyrase B subunit GyrB [Janthinobacte 0.701 0.977 0.643 0.0
398836814832 DNA gyrase, B subunit [Herbaspirillum sp 0.709 0.990 0.633 0.0
427400237833 DNA gyrase, B subunit [Massilia timonae 0.701 0.978 0.629 0.0
415952619832 DNA gyrase subunit B [Herbaspirillum fri 0.709 0.990 0.629 0.0
409408605832 DNA gyrase subunit B [Herbaspirillum sp. 0.709 0.990 0.630 0.0
300309349832 DNA gyrase subunit B [Herbaspirillum ser 0.709 0.990 0.629 0.0
>gi|399020745|ref|ZP_10722870.1| DNA gyrase, B subunit [Herbaspirillum sp. CF444] gi|398093976|gb|EJL84348.1| DNA gyrase, B subunit [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
 Score = 1139 bits (2945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/823 (64%), Positives = 677/823 (82%), Gaps = 1/823 (0%)

Query: 340  QDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCT 399
            +  Q++ Y ASSIQILEGLEAVRKRP MYIGDTSDGTGLHH VFE+LDN+IDESLAG+CT
Sbjct: 13   EQPQQNQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDESLAGHCT 72

Query: 400  KINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISG 459
            +I+VTI+SDNSISI+DNGRGIP  IK+DDKH+PKRSAAEIVMTELHAGGKF++NSYK+SG
Sbjct: 73   EIHVTIHSDNSISITDNGRGIPTGIKMDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 132

Query: 460  GLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTN 519
            GLHG+G+SCVNGLS+ L+LT+ R+ K+H MEF  G+ Q+R I+ ++G+ VSPIK+IGDT+
Sbjct: 133  GLHGVGVSCVNGLSKLLRLTVRRDGKVHAMEFVRGIPQDRQIEVVDGVQVSPIKVIGDTD 192

Query: 520  KQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGT 579
            K+GT++HFW DE+IF+++EFHYEIL KRIRELSFLNNGV I L D+R  K+E F F+GGT
Sbjct: 193  KRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIRLTDQRTGKEEDFAFEGGT 252

Query: 580  SGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVD 639
             GFV YINK+K +++PTIFQA G ++S++  NI++DVSMQWN++YNE +LCFTNNI Q D
Sbjct: 253  RGFVEYINKNKSILNPTIFQATGERMSDQNTNISVDVSMQWNDAYNEQVLCFTNNIPQRD 312

Query: 640  GGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTK 699
            GGTHLTGLR+ +TR INKYIEEN+F KK+K+E+ G+D+REGLTCVLS+K+P+PKF+SQTK
Sbjct: 313  GGTHLTGLRAAMTRVINKYIEENDFAKKAKVEVSGDDMREGLTCVLSVKVPEPKFSSQTK 372

Query: 700  NKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNL 759
            +KLVSSEVR PVEEI+ KTL DFLQE P ++K+IC KI+EAAR+REAARK RELTR+K +
Sbjct: 373  DKLVSSEVRGPVEEIVAKTLTDFLQEKPNDAKIICGKIVEAARAREAARKARELTRRKGV 432

Query: 760  IDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKAR 819
            +D + LS KLADCQEK+P LCELYIVEGDSAGGS KQGRDR+FQA+LPLRGKVLN+EKAR
Sbjct: 433  MDGLGLSAKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKAR 492

Query: 820  FEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRK 879
            FEK++ SEQITTLI+TLG  I  DEFN +KLRYHRIIIMTDAD+DGAHIR LLLT FYR+
Sbjct: 493  FEKMLSSEQITTLIATLGTSIGPDEFNADKLRYHRIIIMTDADVDGAHIRTLLLTLFYRQ 552

Query: 880  MPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKE 939
            MP+L+E G+IYIAQPPLYK+K G +E YL+DD+EE  YM++IA  + +L+  E    I  
Sbjct: 553  MPQLVERGHIYIAQPPLYKVKAGKDERYLKDDVEEAHYMMQIALNDAELVPSEGAAPISG 612

Query: 940  NYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDS 999
                +L+ +YN    I+ RL ++ID + LSAIM+ V L L+T   AEQ A  +   +N+ 
Sbjct: 613  APLTELVRQYNTANAIIMRLTRMIDATALSAIMTGVTLQLNTAAEAEQSAVALKAAINEP 672

Query: 1000 NIEIIVEFDQLNNKYLLNIKKKFLKK-KNYIIDINFINNKDYKKLVSIISTFKKIIGKGV 1058
             I++IV  D+L +K++L I++ +    K   ID +F+N  DY+ L +  +TF+ +IG G 
Sbjct: 673  GIDVIVRSDELTDKHVLRIQRMYHGNIKVTAIDTDFVNGPDYQVLANAAATFRGLIGPGA 732

Query: 1059 IIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRC 1118
            +I++  G+KIK+   N+F++ + +LR EAE  V KQRYKGLGEMNP QLWETTM+P +R 
Sbjct: 733  LIRRGTGDKIKESAINDFHQAMAWLREEAERGVSKQRYKGLGEMNPEQLWETTMDPTVRR 792

Query: 1119 LLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 1161
            LLKV+I+DAI+AD+IFMTLMGD+VE RR FIELNAL A NID+
Sbjct: 793  LLKVQIEDAIAADQIFMTLMGDDVEPRRAFIELNALQAGNIDV 835

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|134093298|ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] gi|133737201|emb|CAL60244.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|340785200|ref|YP_004750665.1| DNA gyrase subunit B [Collimonas fungivorans Ter331] gi|340550467|gb|AEK59842.1| DNA gyrase subunit B [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
>gi|152980048|ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] gi|151280125|gb|ABR88535.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|445499783|ref|ZP_21466638.1| DNA gyrase B subunit GyrB [Janthinobacterium sp. HH01] gi|444789778|gb|ELX11326.1| DNA gyrase B subunit GyrB [Janthinobacterium sp. HH01] Back     alignment and taxonomy information
>gi|398836814|ref|ZP_10594142.1| DNA gyrase, B subunit [Herbaspirillum sp. YR522] gi|398210880|gb|EJM97514.1| DNA gyrase, B subunit [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|427400237|ref|ZP_18891475.1| DNA gyrase, B subunit [Massilia timonae CCUG 45783] gi|425720977|gb|EKU83892.1| DNA gyrase, B subunit [Massilia timonae CCUG 45783] Back     alignment and taxonomy information
>gi|415952619|ref|ZP_11557187.1| DNA gyrase subunit B [Herbaspirillum frisingense GSF30] gi|407757356|gb|EKF67352.1| DNA gyrase subunit B [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|409408605|ref|ZP_11257040.1| DNA gyrase subunit B [Herbaspirillum sp. GW103] gi|386431927|gb|EIJ44755.1| DNA gyrase subunit B [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|300309349|ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seropedicae SmR1] gi|300072134|gb|ADJ61533.1| DNA gyrase subunit B protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1161
TIGR_CMR|SO_0011805 SO_0011 "DNA gyrase, B subunit 0.682 0.983 0.440 2.7e-178
UNIPROTKB|P0AES6804 gyrB [Escherichia coli K-12 (t 0.682 0.985 0.435 8.3e-177
TIGR_CMR|ECH_0620798 ECH_0620 "DNA gyrase, B subuni 0.519 0.755 0.449 1.4e-159
UNIPROTKB|Q9KVX3805 gyrB "DNA gyrase subunit B" [V 0.608 0.878 0.428 1.3e-158
TIGR_CMR|VC_0015805 VC_0015 "DNA gyrase, subunit B 0.608 0.878 0.428 1.3e-158
TIGR_CMR|APH_0716793 APH_0716 "DNA gyrase, B subuni 0.671 0.983 0.408 1.3e-153
UNIPROTKB|A6UX65806 gyrB "DNA gyrase subunit B" [P 0.440 0.635 0.488 6.4e-153
UNIPROTKB|Q3KMH2804 gyrB_1 "DNA gyrase subunit B" 0.494 0.713 0.432 6.6e-149
UNIPROTKB|Q74H89795 gyrB "DNA gyrase subunit B" [G 0.470 0.686 0.426 2.4e-142
TIGR_CMR|GSU_0003795 GSU_0003 "DNA gyrase, B subuni 0.470 0.686 0.426 2.4e-142
TIGR_CMR|SO_0011 SO_0011 "DNA gyrase, B subunit" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
 Score = 1731 (614.4 bits), Expect = 2.7e-178, P = 2.7e-178
 Identities = 365/829 (44%), Positives = 508/829 (61%)

Query:   344 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINV 403
             E+SY +SSI++L+GL+AVRKRP MYIGDT DGTGLHH VFE++DN+IDE+LAG+CT I +
Sbjct:     3 ENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITI 62

Query:   404 TIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHG 463
             TI+          GRG               SAAE++MT LHAGGKF+ NSYK+SGGLHG
Sbjct:    63 TIHVDGSVSVKDDGRGIPVSIHEEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHG 118

Query:   464 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGT 523
             +G+S VN LS+ LQLTI R+ K+H   + +GV              +PIK IGD  K GT
Sbjct:   119 VGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD------------APIKEIGDATKTGT 166

Query:   524 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFV 583
             +I FW  E+ FSN+EFH+EIL KR+RELSFLN+GV I L+DER             S FV
Sbjct:   167 EIRFWPSEQTFSNVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKNEFFKYEGGISAFV 226

Query:   584 SYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTH 643
              Y+N++K  V+  +F                +V+MQWN+ Y ENI CFTNNI Q DGGTH
Sbjct:   227 DYLNRNKTPVNKDVFH----FMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTH 282

Query:   644 LTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLV 703
             L G RS +TR +N Y+E   + KK K    G+D REGLT V+S+K+PDPKF+SQTK+KLV
Sbjct:   283 LAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLV 342

Query:   704 SSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDI 763
             SSEV+  VE+ + + L D+L ENP ++KLI                   +TR+K  +D  
Sbjct:   343 SSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLG 402

Query:   764 ELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKI 823
              L  KLADCQEK+P L E+YIVEGDSAGGS KQGR+R+ QA+LPL+GK+LN+EKARF+K+
Sbjct:   403 GLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 462

Query:   824 ILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKL 883
             + S++             +DE+N +K RYH IIIMTDAD+DG+HIR LLLTFF+R+MP+L
Sbjct:   463 LSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPEL 522

Query:   884 IEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFF 943
             IE GY+YIAQPPL+K+K G  E YL+D+    +Y+   A     +   +    +      
Sbjct:   523 IERGYVYIAQPPLFKVKKGKQEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLE 582

Query:   944 KLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDT-------RENAEQFAKKIIKKL 996
             +L+ +Y +   IV RL+Q     I + ++   +++ D        +E  + F  ++++ L
Sbjct:   583 RLVTQYREVEAIVARLEQRYPTHITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVE-L 641

Query:   997 NDSNI----EIIVEFDQXXXXXXXXXXXXXXXXXXXXXDINFINNKDYKKLVSIISTFXX 1052
              +S +    E +++  +                       +F  + DY+++  + +    
Sbjct:   642 ENSGVLYSGEPVLD-PERKVYLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEG 700

Query:  1053 XXXXXXXXXXXXXEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTM 1112
                          +++K+    +F + +++  +EA+  +  QRYKGLGEMNP QLWETTM
Sbjct:   701 LIEVGGYVQRG--DRVKE--VGSFIEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTM 756

Query:  1113 NPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 1161
             +P  R +L+V I DA+ AD++F  LMGD VE RR+FIE NAL+  N+D+
Sbjct:   757 DPESRRMLQVTIDDAVGADQLFTCLMGDQVEPRREFIEANALNVANLDV 805
GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS
GO:0006260 "DNA replication" evidence=ISS
GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISS
UNIPROTKB|P0AES6 gyrB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0620 ECH_0620 "DNA gyrase, B subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVX3 gyrB "DNA gyrase subunit B" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0015 VC_0015 "DNA gyrase, subunit B" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0716 APH_0716 "DNA gyrase, B subunit" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
UNIPROTKB|A6UX65 gyrB "DNA gyrase subunit B" [Pseudomonas aeruginosa PA7 (taxid:381754)] Back     alignment and assigned GO terms
UNIPROTKB|Q3KMH2 gyrB_1 "DNA gyrase subunit B" [Chlamydia trachomatis A/HAR-13 (taxid:315277)] Back     alignment and assigned GO terms
UNIPROTKB|Q74H89 gyrB "DNA gyrase subunit B" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0003 GSU_0003 "DNA gyrase, B subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q68WF6GYRB_RICTY5, ., 9, 9, ., 1, ., 30.46240.66920.9628yesN/A
P55992GYRB_HELPY5, ., 9, 9, ., 1, ., 30.40570.65200.9793yesN/A
P29435GYRB_BUCAP5, ., 9, 9, ., 1, ., 30.49930.67780.9800yesN/A
Q4UKX5GYRB_RICFE5, ., 9, 9, ., 1, ., 30.46300.66920.9616yesN/A
P22118GYRB_NEIGO5, ., 9, 9, ., 1, ., 30.50900.66580.9897yesN/A
P05652GYRB_BACSU5, ., 9, 9, ., 1, ., 30.50600.47800.8699yesN/A
Q9Z8R3GYRB_CHLPN5, ., 9, 9, ., 1, ., 30.43690.66830.9639yesN/A
O51859GYRB_VIBPA5, ., 9, 9, ., 1, ., 30.48780.68040.9813yesN/A
Q92H87GYRB_RICCN5, ., 9, 9, ., 1, ., 30.45540.67700.9739yesN/A
O67137GYRB_AQUAE5, ., 9, 9, ., 1, ., 30.42300.67610.9911yesN/A
Q9KVX3GYRB_VIBCH5, ., 9, 9, ., 1, ., 30.49690.68130.9826yesN/A
P13364GYRB_PSEPU5, ., 9, 9, ., 1, ., 30.48970.68380.9851yesN/A
Q89B37GYRB_BUCBP5, ., 9, 9, ., 1, ., 30.50180.68210.9850yesN/A
P0A2I3GYRB_SALTY5, ., 9, 9, ., 1, ., 30.48360.68040.9825yesN/A
P43701GYRB_HAEIN5, ., 9, 9, ., 1, ., 30.48730.68560.9875yesN/A
O87667GYRB_CAMJE5, ., 9, 9, ., 1, ., 30.42390.65280.9856yesN/A
Q9I7C2GYRB_PSEAE5, ., 9, 9, ., 1, ., 30.49150.68470.9863yesN/A
P57126GYRB_BUCAI5, ., 9, 9, ., 1, ., 30.49160.67010.9688yesN/A
B8GXQ0GYRB_CAUCN5, ., 9, 9, ., 1, ., 30.44640.68210.9838yesN/A
Q1RHT8GYRB_RICBR5, ., 9, 9, ., 1, ., 30.45120.67700.9727yesN/A
Q9ZLX3GYRB_HELPJ5, ., 9, 9, ., 1, ., 30.40480.65890.9896yesN/A
Q9ZCX2GYRB_RICPR5, ., 9, 9, ., 1, ., 30.45830.66830.9615yesN/A
P0AES8GYRB_SHIFL5, ., 9, 9, ., 1, ., 30.48120.68040.9825yesN/A
P0CAX1GYRB_CAUCR5, ., 9, 9, ., 1, ., 30.44640.68210.9838yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.99.1.30.824
3rd Layer2.7.70.691
4th Layer2.7.7.7LOW CONFIDENCE prediction!
3rd Layer5.99.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1161
PRK14939756 PRK14939, gyrB, DNA gyrase subunit B; Provisional 0.0
PRK05644638 PRK05644, gyrB, DNA gyrase subunit B; Validated 0.0
COG0187635 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/ 0.0
TIGR01059654 TIGR01059, gyrB, DNA gyrase, B subunit 0.0
PRK05559631 PRK05559, PRK05559, DNA topoisomerase IV subunit B 0.0
smart00433594 smart00433, TOP2c, TopoisomeraseII 0.0
TIGR01058637 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subu 0.0
TIGR01055625 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subu 1e-134
PTZ00109903 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisio 1e-132
PRK05643367 PRK05643, PRK05643, DNA polymerase III subunit bet 4e-98
cd00140365 cd00140, beta_clamp, Beta clamp domain 1e-86
cd00822172 cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DN 4e-70
smart00480345 smart00480, POL3Bc, DNA polymerase III beta subuni 9e-69
cd03366114 cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: 6e-65
COG0592364 COG0592, DnaN, DNA polymerase sliding clamp subuni 1e-59
cd01030115 cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: 2e-59
pfam00204173 pfam00204, DNA_gyraseB, DNA gyrase B 4e-58
TIGR00663367 TIGR00663, dnan, DNA polymerase III, beta subunit 4e-57
PTZ00108 1388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 1e-45
PHA02569602 PHA02569, 39, DNA topoisomerase II large subunit; 6e-43
PRK14940367 PRK14940, PRK14940, DNA polymerase III subunit bet 2e-38
PRK14943374 PRK14943, PRK14943, DNA polymerase III subunit bet 2e-36
PLN03128 1135 PLN03128, PLN03128, DNA topoisomerase 2; Provision 8e-36
PRK05644638 PRK05644, gyrB, DNA gyrase subunit B; Validated 2e-31
TIGR01059654 TIGR01059, gyrB, DNA gyrase, B subunit 5e-29
COG0187635 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/ 1e-28
pfam0098665 pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, ca 2e-28
PRK14941374 PRK14941, PRK14941, DNA polymerase III subunit bet 5e-25
pfam02767116 pfam02767, DNA_pol3_beta_2, DNA polymerase III bet 1e-24
PLN03237 1465 PLN03237, PLN03237, DNA topoisomerase 2; Provision 8e-24
PRK05559631 PRK05559, PRK05559, DNA topoisomerase IV subunit B 2e-22
smart00433594 smart00433, TOP2c, TopoisomeraseII 1e-20
pfam00712120 pfam00712, DNA_pol3_beta, DNA polymerase III beta 4e-20
cd03365120 cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisome 5e-20
PRK14945362 PRK14945, PRK14945, DNA polymerase III subunit bet 1e-19
PRK06673376 PRK06673, PRK06673, DNA polymerase III subunit bet 1e-18
PRK14942373 PRK14942, PRK14942, DNA polymerase III subunit bet 2e-18
TIGR01058637 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subu 2e-17
pfam0175186 pfam01751, Toprim, Toprim domain 2e-13
cd00329107 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer 4e-13
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 4e-12
PTZ00109903 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisio 5e-12
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 2e-11
PRK07761376 PRK07761, PRK07761, DNA polymerase III subunit bet 2e-11
PRK14944375 PRK14944, PRK14944, DNA polymerase III subunit bet 1e-10
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 1e-10
pfam02768121 pfam02768, DNA_pol3_beta_3, DNA polymerase III bet 8e-10
PRK14947384 PRK14947, PRK14947, DNA polymerase III subunit bet 1e-09
TIGR01055625 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subu 1e-07
cd0018883 cd00188, TOPRIM, Topoisomerase-primase domain 6e-04
cd03481153 cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_Sc 0.002
PRK00448 1437 PRK00448, polC, DNA polymerase III PolC; Validated 0.003
>gnl|CDD|237860 PRK14939, gyrB, DNA gyrase subunit B; Provisional Back     alignment and domain information 
 Score = 1226 bits (3174), Expect = 0.0
 Identities = 424/821 (51%), Positives = 576/821 (70%), Gaps = 65/821 (7%)

Query: 341  DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTK 400
                +SY ASSI++L+GL+AVRKRP MYIGDT DGTGLHH V+E++DNAIDE+LAG+C  
Sbjct: 1    SMMSNSYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDD 60

Query: 401  INVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGG 460
            I VTI++D S+S+SDNGRGIP DI      +   SAAE++MT LHAGGKF++NSYK+SGG
Sbjct: 61   ITVTIHADGSVSVSDNGRGIPTDIH----PEEGVSAAEVIMTVLHAGGKFDQNSYKVSGG 116

Query: 461  LHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNK 520
            LHG+G+S VN LS +L+LTI R+ KIH  EF             +G+ V+P+K++G+T+K
Sbjct: 117  LHGVGVSVVNALSEWLELTIRRDGKIHEQEFE------------HGVPVAPLKVVGETDK 164

Query: 521  QGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTS 580
             GT++ FW   +IF N EF Y+IL KR+REL+FLN+GV I L DER  K+E F ++GG  
Sbjct: 165  TGTEVRFWPSPEIFENTEFDYDILAKRLRELAFLNSGVRIRLKDERDGKEEEFHYEGGIK 224

Query: 581  GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDG 640
             FV Y+N++K  +HP IF       S +K+ I ++V++QWN+SY EN+LCFTNNI Q DG
Sbjct: 225  AFVEYLNRNKTPLHPNIFY-----FSGEKDGIGVEVALQWNDSYQENVLCFTNNIPQRDG 279

Query: 641  GTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKN 700
            GTHL G R+ +TR IN YIE+    KK+K+ + G+D REGLT VLS+K+PDPKF+SQTK+
Sbjct: 280  GTHLAGFRAALTRTINNYIEKEGLAKKAKVSLTGDDAREGLTAVLSVKVPDPKFSSQTKD 339

Query: 701  KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLI 760
            KLVSSEVR  VE ++ + L +FL+ENP E+K+I  KII+AAR+REAARK RELTR+K  +
Sbjct: 340  KLVSSEVRPAVESLVNEKLSEFLEENPNEAKIIVGKIIDAARAREAARKARELTRRKGAL 399

Query: 761  DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 820
            D   L  KLADCQEK+P L ELY+VEGDSAGGS KQGRDR+FQA+LPL+GK+LN+EKARF
Sbjct: 400  DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARF 459

Query: 821  EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKM 880
            +K++ S++I TLI+ LG GI +DEFN +KLRYH+IIIMTDAD+DG+HIR LLLTFFYR+M
Sbjct: 460  DKMLSSQEIGTLITALGCGIGRDEFNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFYRQM 519

Query: 881  PKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKEN 940
            P+LIE G++YIAQPPLYK+K G  E YL+DD   + Y++++A +   L  + +G  I   
Sbjct: 520  PELIERGHLYIAQPPLYKVKKGKQEQYLKDDEALDDYLIELALEGATLH-LADGPAISGE 578

Query: 941  YFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSN 1000
               KL+ +Y    +I+ RL++    ++L A++    L+LD   +    A           
Sbjct: 579  ALEKLVKEYRAVRKIIDRLERRYPRAVLEALIYAPALDLDDLADEAAVAA---------- 628

Query: 1001 IEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVII 1060
                                         +D +F+ + +Y++LV +    + +I +G  +
Sbjct: 629  -----------------------------LDADFLTSAEYRRLVELAEKLRGLIEEGAYL 659

Query: 1061 QKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLL 1120
            ++  GE  +K   ++F + +++L  EA   +  QRYKGLGEMNP QLWETTM+P  R LL
Sbjct: 660  ER--GE--RKQPVSSFEEALDWLLAEARKGLSIQRYKGLGEMNPEQLWETTMDPENRRLL 715

Query: 1121 KVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 1161
            +V I+DAI+AD+IF TLMGD VE RR+FIE NAL+  N+D+
Sbjct: 716  QVTIEDAIAADEIFTTLMGDEVEPRREFIEENALNVANLDV 756

Length = 756
>gnl|CDD|235542 PRK05644, gyrB, DNA gyrase subunit B; Validated Back     alignment and domain information
>gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233254 TIGR01059, gyrB, DNA gyrase, B subunit Back     alignment and domain information
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII Back     alignment and domain information
>gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>gnl|CDD|130127 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional Back     alignment and domain information
>gnl|CDD|235541 PRK05643, PRK05643, DNA polymerase III subunit beta; Validated Back     alignment and domain information
>gnl|CDD|238082 cd00140, beta_clamp, Beta clamp domain Back     alignment and domain information
>gnl|CDD|238419 cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E Back     alignment and domain information
>gnl|CDD|214686 smart00480, POL3Bc, DNA polymerase III beta subunit Back     alignment and domain information
>gnl|CDD|173786 cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit Back     alignment and domain information
>gnl|CDD|223665 COG0592, DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173780 cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II Back     alignment and domain information
>gnl|CDD|215785 pfam00204, DNA_gyraseB, DNA gyrase B Back     alignment and domain information
>gnl|CDD|233078 TIGR00663, dnan, DNA polymerase III, beta subunit Back     alignment and domain information
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>gnl|CDD|184904 PRK14940, PRK14940, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|184907 PRK14943, PRK14943, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional Back     alignment and domain information
>gnl|CDD|235542 PRK05644, gyrB, DNA gyrase subunit B; Validated Back     alignment and domain information
>gnl|CDD|233254 TIGR01059, gyrB, DNA gyrase, B subunit Back     alignment and domain information
>gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|201537 pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, carboxyl terminus Back     alignment and domain information
>gnl|CDD|184905 PRK14941, PRK14941, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|202381 pfam02767, DNA_pol3_beta_2, DNA polymerase III beta subunit, central domain Back     alignment and domain information
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional Back     alignment and domain information
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII Back     alignment and domain information
>gnl|CDD|216076 pfam00712, DNA_pol3_beta, DNA polymerase III beta subunit, N-terminal domain Back     alignment and domain information
>gnl|CDD|173785 cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II Back     alignment and domain information
>gnl|CDD|184909 PRK14945, PRK14945, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|135998 PRK06673, PRK06673, DNA polymerase III subunit beta; Validated Back     alignment and domain information
>gnl|CDD|184906 PRK14942, PRK14942, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>gnl|CDD|216679 pfam01751, Toprim, Toprim domain Back     alignment and domain information
>gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|236089 PRK07761, PRK07761, DNA polymerase III subunit beta; Validated Back     alignment and domain information
>gnl|CDD|184908 PRK14944, PRK14944, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|111641 pfam02768, DNA_pol3_beta_3, DNA polymerase III beta subunit, C-terminal domain Back     alignment and domain information
>gnl|CDD|237861 PRK14947, PRK14947, DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|130127 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>gnl|CDD|173773 cd00188, TOPRIM, Topoisomerase-primase domain Back     alignment and domain information
>gnl|CDD|239563 cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA Back     alignment and domain information
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1161
COG0187635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 100.0
PRK14939756 gyrB DNA gyrase subunit B; Provisional 100.0
PTZ00109903 DNA gyrase subunit b; Provisional 100.0
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 100.0
PRK05644638 gyrB DNA gyrase subunit B; Validated 100.0
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 100.0
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 100.0
TIGR01059654 gyrB DNA gyrase, B subunit. This model describes t 100.0
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 100.0
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 100.0
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 100.0
PLN03128 1135 DNA topoisomerase 2; Provisional 100.0
PLN03237 1465 DNA topoisomerase 2; Provisional 100.0
KOG0355|consensus 842 100.0
PRK14944375 DNA polymerase III subunit beta; Provisional 100.0
PRK14942373 DNA polymerase III subunit beta; Provisional 100.0
PRK14947384 DNA polymerase III subunit beta; Provisional 100.0
PRK14940367 DNA polymerase III subunit beta; Provisional 100.0
PRK06673376 DNA polymerase III subunit beta; Validated 100.0
PRK14946366 DNA polymerase III subunit beta; Provisional 100.0
cd03366114 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisome 100.0
cd01030115 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisome 100.0
PRK14941374 DNA polymerase III subunit beta; Provisional 100.0
PRK07761376 DNA polymerase III subunit beta; Validated 100.0
PRK14945362 DNA polymerase III subunit beta; Provisional 100.0
smart00480345 POL3Bc DNA polymerase III beta subunit. 100.0
PRK05643367 DNA polymerase III subunit beta; Validated 100.0
PRK14943374 DNA polymerase III subunit beta; Provisional 100.0
TIGR00663367 dnan DNA polymerase III, beta subunit. University) 100.0
cd03365120 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-prima 100.0
COG0592364 DnaN DNA polymerase sliding clamp subunit (PCNA ho 100.0
cd00140365 beta_clamp Beta clamp domain. The beta subunit (pr 100.0
cd00822172 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: 100.0
PF00204173 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA 100.0
PF0098665 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl term 99.97
cd03481153 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: T 99.96
PRK00095617 mutL DNA mismatch repair protein; Reviewed 99.88
PF00712120 DNA_pol3_beta: DNA polymerase III beta subunit, N- 99.87
cd00140365 beta_clamp Beta clamp domain. The beta subunit (pr 99.86
PF02767116 DNA_pol3_beta_2: DNA polymerase III beta subunit, 99.85
PRK01115247 DNA polymerase sliding clamp; Validated 99.8
PRK05643367 DNA polymerase III subunit beta; Validated 99.8
TIGR00663367 dnan DNA polymerase III, beta subunit. University) 99.79
PRK14945362 DNA polymerase III subunit beta; Provisional 99.79
PRK14943374 DNA polymerase III subunit beta; Provisional 99.77
smart00480345 POL3Bc DNA polymerase III beta subunit. 99.75
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 99.68
PRK07761376 DNA polymerase III subunit beta; Validated 99.66
cd00577248 PCNA Proliferating Cell Nuclear Antigen (PCNA) dom 99.64
PRK14940367 DNA polymerase III subunit beta; Provisional 99.6
PRK14941374 DNA polymerase III subunit beta; Provisional 99.6
PRK14944375 DNA polymerase III subunit beta; Provisional 99.55
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 99.54
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 99.54
PRK04184535 DNA topoisomerase VI subunit B; Validated 99.51
PRK14942373 DNA polymerase III subunit beta; Provisional 99.48
PRK14946366 DNA polymerase III subunit beta; Provisional 99.47
PRK06673376 DNA polymerase III subunit beta; Validated 99.46
PRK14947384 DNA polymerase III subunit beta; Provisional 99.46
PRK14867659 DNA topoisomerase VI subunit B; Provisional 99.45
PF02768121 DNA_pol3_beta_3: DNA polymerase III beta subunit, 99.38
PF00712120 DNA_pol3_beta: DNA polymerase III beta subunit, N- 99.32
COG0592364 DnaN DNA polymerase sliding clamp subunit (PCNA ho 99.18
PRK14868795 DNA topoisomerase VI subunit B; Provisional 99.12
COG0323638 MutL DNA mismatch repair enzyme (predicted ATPase) 99.11
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 99.03
PF01751100 Toprim: Toprim domain; InterPro: IPR006171 This is 98.99
PF02767116 DNA_pol3_beta_2: DNA polymerase III beta subunit, 98.91
PRK01115247 DNA polymerase sliding clamp; Validated 98.74
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.57
KOG1978|consensus672 98.57
cd00329107 TopoII_MutL_Trans MutL_Trans: transducer domain, h 98.53
cd00577248 PCNA Proliferating Cell Nuclear Antigen (PCNA) dom 98.45
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 98.43
PRK05218613 heat shock protein 90; Provisional 98.28
KOG1979|consensus694 98.2
PHA03383262 PCNA-like protein; Provisional 98.07
TIGR00590259 pcna proliferating cell nuclear antigen (pcna). Al 97.89
PLN00057263 proliferating cell nuclear antigen; Provisional 97.87
PTZ00113275 proliferating cell nuclear antigen; Provisional 97.85
PTZ00483264 proliferating cell nuclear antigen; Provisional 97.79
TIGR00590259 pcna proliferating cell nuclear antigen (pcna). Al 97.79
PRK14083601 HSP90 family protein; Provisional 97.78
PTZ00113275 proliferating cell nuclear antigen; Provisional 97.76
PLN00057263 proliferating cell nuclear antigen; Provisional 97.73
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 97.57
PHA03383262 PCNA-like protein; Provisional 97.46
PTZ00483264 proliferating cell nuclear antigen; Provisional 97.42
KOG1977|consensus 1142 97.33
PTZ00272701 heat shock protein 83 kDa (Hsp83); Provisional 97.24
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 97.07
PF02768121 DNA_pol3_beta_3: DNA polymerase III beta subunit, 97.05
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 96.61
PRK04069161 serine-protein kinase RsbW; Provisional 96.46
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 96.43
PHA02545223 45 sliding clamp; Provisional 96.29
PTZ00130814 heat shock protein 90; Provisional 96.19
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 96.08
PRK10549466 signal transduction histidine-protein kinase BaeS; 95.93
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 95.91
COG3920221 Signal transduction histidine kinase [Signal trans 95.72
PRK11086542 sensory histidine kinase DcuS; Provisional 95.61
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 95.44
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 95.42
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 95.41
COG3290537 CitA Signal transduction histidine kinase regulati 95.37
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 95.36
PRK03660146 anti-sigma F factor; Provisional 95.29
PRK09470461 cpxA two-component sensor protein; Provisional 95.23
PRK10604433 sensor protein RstB; Provisional 95.11
PRK10364457 sensor protein ZraS; Provisional 95.1
PRK11006430 phoR phosphate regulon sensor protein; Provisional 94.96
PRK10337449 sensor protein QseC; Provisional 94.9
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 94.57
PRK11100475 sensory histidine kinase CreC; Provisional 94.57
PRK09467435 envZ osmolarity sensor protein; Provisional 94.41
PRK09303380 adaptive-response sensory kinase; Validated 94.29
PRK15347921 two component system sensor kinase SsrA; Provision 94.25
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 94.15
PRK10755356 sensor protein BasS/PmrB; Provisional 94.08
PRK09835482 sensor kinase CusS; Provisional 93.75
KOG1636|consensus260 93.56
PRK10815485 sensor protein PhoQ; Provisional 93.48
COG4191603 Signal transduction histidine kinase regulating C4 93.07
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 93.01
PRK11644495 sensory histidine kinase UhpB; Provisional 92.77
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 92.55
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 92.51
KOG1636|consensus260 92.35
PRK13837828 two-component VirA-like sensor kinase; Provisional 92.24
COG3850574 NarQ Signal transduction histidine kinase, nitrate 91.9
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 91.73
COG0642336 BaeS Signal transduction histidine kinase [Signal 91.66
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 91.44
PRK10841924 hybrid sensory kinase in two-component regulatory 91.36
PRK11360607 sensory histidine kinase AtoS; Provisional 91.04
COG3852363 NtrB Signal transduction histidine kinase, nitroge 91.02
PRK10618894 phosphotransfer intermediate protein in two-compon 90.6
PRK10490895 sensor protein KdpD; Provisional 90.3
PRK10547670 chemotaxis protein CheA; Provisional 90.24
PRK13560807 hypothetical protein; Provisional 90.21
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 89.98
cd0018883 TOPRIM Topoisomerase-primase domain. This is a nuc 89.29
PF04139252 Rad9: Rad9; InterPro: IPR007268 Rad9 is required f 89.27
PRK11091779 aerobic respiration control sensor protein ArcB; P 89.26
COG4585365 Signal transduction histidine kinase [Signal trans 88.13
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 88.0
PRK13557540 histidine kinase; Provisional 87.99
COG5000712 NtrY Signal transduction histidine kinase involved 87.98
PF02747128 PCNA_C: Proliferating cell nuclear antigen, C-term 87.8
KOG0787|consensus414 87.63
PRK13559361 hypothetical protein; Provisional 87.56
PRK099591197 hybrid sensory histidine kinase in two-component r 85.07
COG5002459 VicK Signal transduction histidine kinase [Signal 84.2
PF00705127 PCNA_N: Proliferating cell nuclear antigen, N-term 83.52
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=4e-222  Score=1904.75  Aligned_cols=630  Identities=59%  Similarity=0.958  Sum_probs=605.8

Q ss_pred             ccccCcchhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCcEEEEECCCccccc
Q psy13360        344 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPID  423 (1161)
Q Consensus       344 ~~~y~~~~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~  423 (1161)
                      .++|++++|++|+||||||||||||||||+.++|||||||||||||||||+||||+.|.|+||+||||+|.||||||||+
T Consensus         3 ~~~Y~a~~I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~sisV~DnGRGIPvd   82 (635)
T COG0187           3 TNNYDASSIQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDGSISVEDNGRGIPVD   82 (635)
T ss_pred             cCcCCHhHceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCCeEEEEECCCCCccc
Confidence            36799999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEEEEeCCEEEEEEEEcCccccccccc
Q psy13360        424 IKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKT  503 (1161)
Q Consensus       424 ~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~  503 (1161)
                      +||+    +++|++|+|||.||||||||+++||+||||||||+|||||||+||+|+|+|+|+.|+|.|++|         
T Consensus        83 iH~~----~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~G---------  149 (635)
T COG0187          83 IHPK----EKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFERG---------  149 (635)
T ss_pred             cCCC----CCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeCC---------
Confidence            9999    889999999999999999999999999999999999999999999999999999999999999         


Q ss_pred             cCCccccCcEEecc--CCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccCCCcEEEEeecccceEE-EEEeCCchh
Q psy13360        504 INGISVSPIKIIGD--TNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKE-IFEFKGGTS  580 (1161)
Q Consensus       504 ~~~~~~~~~~~~g~--~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~-~f~~~~Gi~  580 (1161)
                         .++++++++|.  ++++||+|+||||++||++..|++++|.+|||++|||||||+|.|+|+|..... .|||++||+
T Consensus       150 ---~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~~~~~~y~~Gl~  226 (635)
T COG0187         150 ---VPVTPLEVIGSTDTKKTGTKVRFKPDPEIFGETEFDYEILKRRLRELAFLNKGVKITLTDERTGEEKKEFHYEGGLK  226 (635)
T ss_pred             ---CcCCCceecccCCCCCCccEEEEEcChHhcCCcccCHHHHHHHHHHHhccCCCCEEEEEeccCCcccceeecccHHH
Confidence               78888888885  357899999999999999999999999999999999999999999999975322 599999999


Q ss_pred             hhhhhhhcCCcccCCceEEEeeccccccCCceEEEEEEeecCCCcceeeeeecccccCCCCchhHHHHHHHHHHHHHHHH
Q psy13360        581 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIE  660 (1161)
Q Consensus       581 ~fv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~veva~~~~~~~~e~~~SFvN~I~T~~GGtHv~g~~~alt~~in~~~~  660 (1161)
                      +|+++++..+.++|+.++++.++.     +++.|||||||+++|+|+++||||||+|++||||++||++||||+||+|++
T Consensus       227 ~yv~~l~~~k~~l~~~~~~~~~~~-----~~~~vEvA~q~~d~~~e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~  301 (635)
T COG0187         227 DYVEYLNKGKTPLHEEIFYFNGEK-----DGIAVEVALQWNDGYSENILSFVNNIPTREGGTHEAGFRSALTRAINEYAK  301 (635)
T ss_pred             HHHHHHhcCCCccccCceecccCc-----cceEEEEEEEEecCCceEEEEeecCccCCCCchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987776     789999999999999999999999999999999999999999999999999


Q ss_pred             HhcccccccccCChhhHhcceEEEEEEeecCCCcccccccccccccccchhHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q psy13360        661 ENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEA  740 (1161)
Q Consensus       661 ~~~l~Kk~~~~~~~~diregL~~vvsv~i~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~  740 (1161)
                      +++++|+.+  ++++||||||++||||+||||||+||||+||+|++++++|++++++.|..||++||..|+.|++|++.+
T Consensus       302 ~~~~~k~~~--l~g~Diregl~aviSvki~~PqFegQTK~KL~n~e~~~~V~~~v~~~~~~~l~enp~~a~~i~~k~i~a  379 (635)
T COG0187         302 KKNLLKEGD--LTGDDIREGLTAVISVKIPDPQFEGQTKEKLGNSEVRSIVEKLVSEAFSLFLEENPQEAKKIVEKAIAA  379 (635)
T ss_pred             HhCcCcccC--CCHHHHhhccEEEEEEECCCCCcCcccccccccHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            999998765  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcccccccccccCccccCCCCCCCcceEEEEeccCCCcccccccCCcceEeeccCCccccccccch
Q psy13360        741 ARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF  820 (1161)
Q Consensus       741 ~~ar~aa~~a~~~~r~k~~~~~~~lpgKl~dc~~~~~~~~eL~ivEGDSA~gsak~grdr~~qailPLrGKilNv~ka~~  820 (1161)
                      |+||+|||+||+++|||++++...||||||||+++||++|||||||||||||||||||||+|||||||||||||||||+.
T Consensus       380 a~aR~aarkare~~R~k~~~~~~~LpGKLadC~skd~~~~ELfiVEGDSAGGSAKqgRdR~~QAILPLRGKiLNVeka~~  459 (635)
T COG0187         380 AKAREAARKARELTRRKSALDIPGLPGKLADCTSKDPEKSELFLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARL  459 (635)
T ss_pred             HHHHHHHHHHHHHHhhhcccccCCCCCcCcccccCCcccceEEEEecCCcchhhhhccCccceEEecccCcchhhhhccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhccHhHHHHHHHhCCCCCCCCCcccccccceEEEeecCCCCChhhHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEE
Q psy13360        821 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIK  900 (1161)
Q Consensus       821 ~ki~~n~Ei~~l~~alG~~~~~~~~~~~~lRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~~Pl~kv~  900 (1161)
                      +||++|+||++|++|||||+++ +||+++||||||||||||||||+|||||||||||||||+||++|||||||||||||+
T Consensus       460 ~kil~N~EI~~ii~AlG~g~~~-~fd~~~LRY~kIiIMTDADvDGaHIrtLLlTfFyr~m~~LIe~G~vyiA~PPLYkv~  538 (635)
T COG0187         460 DKILKNEEIQTIITALGTGIGK-DFDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMPPLIENGHVYIAQPPLYKVK  538 (635)
T ss_pred             hhhhhhHHHHHHHHHhCCCCCC-CCChhhCccCcEEEEecCCCChHHHHHHHHHHHHHHhHHHHHcCcEEEEcCceEEEE
Confidence            9999999999999999999995 599999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCcceeecCHHHHHHHHHHhcccceEEEEcCCCcccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCcC
Q psy13360        901 YGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLD  980 (1161)
Q Consensus       901 ~gk~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  980 (1161)
                      +||++.|+|||.|+++.+.+                                                            
T Consensus       539 ~~k~~~Y~~~d~E~~~~~~~------------------------------------------------------------  558 (635)
T COG0187         539 KGKKTFYAYDDEELEKLLER------------------------------------------------------------  558 (635)
T ss_pred             cCCceeEeCCHHHHHHHHHH------------------------------------------------------------
Confidence            99999999999997665421                                                            


Q ss_pred             ChHHHHHHHHHHHHHhccCceEEEEEeecccceEEEEEEEeecceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEE
Q psy13360        981 TRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVII 1060 (1161)
Q Consensus       981 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1161)
                                     +                                                                
T Consensus       559 ---------------~----------------------------------------------------------------  559 (635)
T COG0187         559 ---------------L----------------------------------------------------------------  559 (635)
T ss_pred             ---------------h----------------------------------------------------------------
Confidence                           0                                                                


Q ss_pred             EeccccccceeeecCHHHHHHHHHHhccCCceeeEEecCCCCChhhhhhhccCcCceeEEEeeeccHHHHHHHHHHhcCC
Q psy13360       1061 QKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGD 1140 (1161)
Q Consensus      1061 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqr~KGLGEmn~~qlwettm~p~~r~l~~v~~~d~~~a~~~~~~lmg~ 1140 (1161)
                           .  +                 + ++++||||||||||||+|||||||||++|+|+||+|+||++||++|++||||
T Consensus       560 -----~--~-----------------~-~~~~IqRyKGLGEMnp~QLwETTmdP~~R~L~~V~i~da~~ad~~f~~LMGd  614 (635)
T COG0187         560 -----G--K-----------------K-KGYEIQRYKGLGEMNPDQLWETTMDPETRRLLQVTIEDADEADEIFSTLMGD  614 (635)
T ss_pred             -----c--c-----------------c-CCceeEeecccCCCCHHHHHHhccCccceeEEEEEcccHHHHHHHHHHHcCC
Confidence                 0  0                 1 4699999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHhhcccccCCC
Q psy13360       1141 NVELRRKFIELNALHAKNIDI 1161 (1161)
Q Consensus      1141 ~v~~Rr~fi~~~a~~~~~ld~ 1161 (1161)
                      +|||||+||++||.++.++||
T Consensus       615 ~ve~Rr~fIe~na~~~~~~di  635 (635)
T COG0187         615 KVEPRRNFIEENALFVENLDI  635 (635)
T ss_pred             CchHHHHHHHHHhhhhhhccC
Confidence            999999999999999999997

>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>KOG0355|consensus Back     alignment and domain information
>PRK14944 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14942 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14947 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14940 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK06673 DNA polymerase III subunit beta; Validated Back     alignment and domain information
>PRK14946 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit Back     alignment and domain information
>cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II Back     alignment and domain information
>PRK14941 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK07761 DNA polymerase III subunit beta; Validated Back     alignment and domain information
>PRK14945 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>smart00480 POL3Bc DNA polymerase III beta subunit Back     alignment and domain information
>PRK05643 DNA polymerase III subunit beta; Validated Back     alignment and domain information
>PRK14943 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>TIGR00663 dnan DNA polymerase III, beta subunit Back     alignment and domain information
>cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II Back     alignment and domain information
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00140 beta_clamp Beta clamp domain Back     alignment and domain information
>cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E Back     alignment and domain information
>PF00204 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>PF00986 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl terminus The Prosite motif does not match this Pfam entry Back     alignment and domain information
>cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III Back     alignment and domain information
>cd00140 beta_clamp Beta clamp domain Back     alignment and domain information
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III Back     alignment and domain information
>PRK01115 DNA polymerase sliding clamp; Validated Back     alignment and domain information
>PRK05643 DNA polymerase III subunit beta; Validated Back     alignment and domain information
>TIGR00663 dnan DNA polymerase III, beta subunit Back     alignment and domain information
>PRK14945 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14943 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>smart00480 POL3Bc DNA polymerase III beta subunit Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK07761 DNA polymerase III subunit beta; Validated Back     alignment and domain information
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea Back     alignment and domain information
>PRK14940 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14941 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14944 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>PRK14942 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14946 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK06673 DNA polymerase III subunit beta; Validated Back     alignment and domain information
>PRK14947 DNA polymerase III subunit beta; Provisional Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III Back     alignment and domain information
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III Back     alignment and domain information
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase Back     alignment and domain information
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III Back     alignment and domain information
>PRK01115 DNA polymerase sliding clamp; Validated Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>KOG1978|consensus Back     alignment and domain information
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins Back     alignment and domain information
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>KOG1979|consensus Back     alignment and domain information
>PHA03383 PCNA-like protein; Provisional Back     alignment and domain information
>TIGR00590 pcna proliferating cell nuclear antigen (pcna) Back     alignment and domain information
>PLN00057 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>PTZ00113 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>PTZ00483 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>TIGR00590 pcna proliferating cell nuclear antigen (pcna) Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PTZ00113 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>PLN00057 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PHA03383 PCNA-like protein; Provisional Back     alignment and domain information
>PTZ00483 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>KOG1977|consensus Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PHA02545 45 sliding clamp; Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>KOG1636|consensus Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1636|consensus Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>cd00188 TOPRIM Topoisomerase-primase domain Back     alignment and domain information
>PF04139 Rad9: Rad9; InterPro: IPR007268 Rad9 is required for transient cell-cycle arrests and transcriptional induction of DNA repair in response to DNA damage Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication [] Back     alignment and domain information
>KOG0787|consensus Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF00705 PCNA_N: Proliferating cell nuclear antigen, N-terminal domain; InterPro: IPR022648 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1161
1ei1_A391 Dimerization Of E. Coli Dna Gyrase B Provides A Str 1e-102
3nuh_B420 A Domain Insertion In E. Coli Gyrb Adopts A Novel F 7e-83
1kij_A390 Crystal Structure Of The 43k Atpase Domain Of Therm 1e-59
4duh_A220 Crystal Structure Of 24 Kda Domain Of E. Coli Dna G 2e-59
1aj6_A219 Novobiocin-resistant Mutant (r136h) Of The N-termin 6e-59
1kzn_A205 Crystal Structure Of E. Coli 24kda Domain In Comple 5e-56
4hyp_A215 Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To 5e-56
3g7e_A203 Crystal Structure Of E. Coli Gyrase B Co-Complexed 5e-56
3qsb_B366 Structure Of E. Coli Poliiibeta With (Z)-5-(1-((4'- 3e-52
3q4l_A368 Structure Of A Small Peptide Ligand Bound To E.Coli 6e-52
2pol_A366 Three-Dimensional Structure Of The Beta Subunit Of 6e-52
3pwe_A366 Crystal Structure Of The E. Coli Beta Clamp Mutant 1e-51
2xur_B373 The G157c Mutation In The Escherichia Coli Sliding 6e-51
1jql_A366 Mechanism Of Processivity Clamp Opening By The Delt 1e-49
3f1v_A366 E. Coli Beta Sliding Clamp, 148-153 Ala Mutant Leng 2e-48
2xcr_B 726 The 3.5a Crystal Structure Of The Catalytic Core (B 1e-46
2xcr_B 726 The 3.5a Crystal Structure Of The Catalytic Core (B 1e-18
2xco_A 726 The 3.1a Crystal Structure Of The Catalytic Core (B 1e-46
2xco_A 726 The 3.1a Crystal Structure Of The Catalytic Core (B 1e-18
3lnu_A408 Crystal Structure Of Pare Subunit Length = 408 4e-46
4hxz_A390 Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To 6e-45
1s16_A390 Crystal Structure Of E. Coli Topoisomerase Iv Pare 2e-43
2xcs_B 692 The 2.1a Crystal Structure Of S. Aureus Gyrase Comp 7e-43
2xcs_B 692 The 2.1a Crystal Structure Of S. Aureus Gyrase Comp 6e-18
4hz5_A216 Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To 3e-42
4em7_A226 Crystal Structure Of A Topoisomerase Atp Inhibitor 2e-40
3foe_C268 Structural Insight Into The Quinolone-Dna Cleavage 1e-37
3foe_C268 Structural Insight Into The Quinolone-Dna Cleavage 7e-14
2zjt_A247 Crystal Structure Of Dna Gyrase B' Domain Sheds Lig 2e-33
2zjt_A247 Crystal Structure Of Dna Gyrase B' Domain Sheds Lig 6e-15
3ig0_A242 Crystal Structure Of The Second Part Of The Mycobac 4e-33
3ig0_A242 Crystal Structure Of The Second Part Of The Mycobac 8e-15
4gee_A215 Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To 1e-32
2xkk_A 767 Crystal Structure Of Moxifloxacin, Dna, And A. Baum 2e-32
2xkj_E 767 Crystal Structure Of Catalytic Core Of A. Baumannii 2e-32
3ttz_A198 Crystal Structure Of A Topoisomerase Atpase Inhibit 3e-31
4b6c_A196 Structure Of The M. Smegmatis Gyrb Atpase Domain In 3e-31
3g75_A184 Crystal Structure Of Staphylococcus Aureus Gyrase B 1e-29
4hz0_A213 Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To 2e-29
3fv5_A201 Crystal Structure Of E. Coli Topoisomerase Iv Co-Co 1e-28
2awa_A390 Crystal Structure Of Dna Polymerase Iii, Beta Chain 2e-18
2avt_A378 Crystal Structure Of The Beta Subunit From Dna Poly 1e-17
1s14_A194 Crystal Structure Of Escherichia Coli Topoisomerase 5e-17
1vpk_A378 Crystal Structure Of Dna Polymerase Iii, Beta Subun 3e-16
4fm9_A 763 Human Topoisomerase Ii Alpha Bound To Dna Length = 2e-13
3qx3_A 803 Human Topoisomerase Iibeta In Complex With Dna And 2e-13
4gfh_A 1103 Topoisomerase Ii-Dna-Amppnp Complex Length = 1103 8e-11
4gfh_F 1099 Topoisomerase Ii-Dna-Amppnp Complex Length = 1099 9e-11
3t0p_A371 Crystal Structure Of A Putative Dna Polymerase Iii 2e-10
3l4j_A 722 Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 3e-10
3rb9_A395 Crystal Structure Of The M. Tuberculosis Beta Clamp 2e-09
3p16_A408 Crystal Structure Of Dna Polymerase Iii Sliding Cla 2e-09
1bgw_A 793 Topoisomerase Residues 410-1202 Length = 793 4e-09
2rgr_A 759 Topoisomerase Iia Bound To G-segment Dna Length = 7 4e-09
3cwv_A369 Crystal Structure Of B-Subunit Of The Dna Gyrase Fr 2e-05
>pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural Mechanism For Activating The Atpase Catalytic Center Length = 391 Back     alignment and structure 
Iteration: 1

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/384 (47%), Positives = 249/384 (64%), Gaps = 22/384 (5%)
Query: 352 IQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYXXXXX 411
           I++L+GL+AVRKRP MYIGDT DGTGLHH VFE++DNAIDE+LAG+C +I VTI+     
Sbjct: 9   IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSV 68
Query: 412 XXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNG 471
                GRG               SAAE++MT LHAGGKF+ NSYK+SGGLHG+G+S VN 
Sbjct: 69  SVQDDGRGIPTGIHPEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNA 124
Query: 472 LSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTKIHFWVDE 531
           LS+ L+L I R  KIH   + +GV Q            +P+ + G+T K GT + FW   
Sbjct: 125 LSQKLELVIQREGKIHRQIYEHGVPQ------------APLAVTGETEKTGTMVRFWPSL 172
Query: 532 KIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFVSYINKSK 590
           + F+N+ EF YEIL KR+RELSFL++GV I L D+R               FV Y+NK+K
Sbjct: 173 ETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNK 232
Query: 591 LVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSG 650
             +HP IF                +V++QWN+ + ENI CFTNNI Q DGGTHL G R+ 
Sbjct: 233 TPIHPNIF-----YFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 287
Query: 651 ITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKP 710
           +TR +N Y+++  + KK+K+   G+D REGL  V+S+K+PDPKF+SQTK+KLVSSEV+  
Sbjct: 288 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 347
Query: 711 VEEIIIKTLFDFLQENPGESKLIC 734
           VE+ + + L ++L ENP ++K++ 
Sbjct: 348 VEQQMNELLAEYLLENPTDAKIVV 371
>pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 420 Back     alignment and structure
>pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus Thermophilus Gyrase B In Complex With Novobiocin Length = 390 Back     alignment and structure
>pdb|4DUH|A Chain A, Crystal Structure Of 24 Kda Domain Of E. Coli Dna Gyrase B In Complex With Small Molecule Inhibitor Length = 220 Back     alignment and structure
>pdb|1AJ6|A Chain A, Novobiocin-resistant Mutant (r136h) Of The N-terminal 24 Kda Fragment Of Dna Gyrase B Complexed With Novobiocin At 2.3 Angstroms Resolution Length = 219 Back     alignment and structure
>pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With Clorobiocin Length = 205 Back     alignment and structure
>pdb|4HYP|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 215 Back     alignment and structure
>pdb|3G7E|A Chain A, Crystal Structure Of E. Coli Gyrase B Co-Complexed With Inhibitor Length = 203 Back     alignment and structure
>pdb|3QSB|B Chain B, Structure Of E. Coli Poliiibeta With (Z)-5-(1-((4'-Fluorobiphenyl-4- Yl)methoxyimino)butyl)-2,2-Dimethyl-4, 6-Dioxocyclohexanecarbonitrile Length = 366 Back     alignment and structure
>pdb|3Q4L|A Chain A, Structure Of A Small Peptide Ligand Bound To E.Coli Dna Sliding Clamp Length = 368 Back     alignment and structure
>pdb|2POL|A Chain A, Three-Dimensional Structure Of The Beta Subunit Of Escherichia Coli Dna Polymerase Iii Holoenzyme: A Sliding Dna Clamp Length = 366 Back     alignment and structure
>pdb|3PWE|A Chain A, Crystal Structure Of The E. Coli Beta Clamp Mutant R103c, I305c, C260s, C333s At 2.2a Resolution Length = 366 Back     alignment and structure
>pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta Subunit Wrench Of The Clamp Loader Complex Of E. Coli Dna Polymerase Iii: Structure Of Beta-Delta (1-140) Length = 366 Back     alignment and structure
>pdb|3F1V|A Chain A, E. Coli Beta Sliding Clamp, 148-153 Ala Mutant Length = 366 Back     alignment and structure
>pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 Back     alignment and structure
>pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 Back     alignment and structure
>pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 Back     alignment and structure
>pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 Back     alignment and structure
>pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit Length = 408 Back     alignment and structure
>pdb|4HXZ|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 390 Back     alignment and structure
>pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda Subunit Complexed With Adpnp Length = 390 Back     alignment and structure
>pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna Length = 692 Back     alignment and structure
>pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna Length = 692 Back     alignment and structure
>pdb|4HZ5|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity Length = 216 Back     alignment and structure
>pdb|4EM7|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor Length = 226 Back     alignment and structure
>pdb|3FOE|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex Of Type Iia Topoisomerases Length = 268 Back     alignment and structure
>pdb|3FOE|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex Of Type Iia Topoisomerases Length = 268 Back     alignment and structure
>pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On The Mechanism For T-Segment Navigation Length = 247 Back     alignment and structure
>pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On The Mechanism For T-Segment Navigation Length = 247 Back     alignment and structure
>pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain At 2.1 A Resolution Length = 242 Back     alignment and structure
>pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain At 2.1 A Resolution Length = 242 Back     alignment and structure
>pdb|4GEE|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 215 Back     alignment and structure
>pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 Back     alignment and structure
>pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 Back     alignment and structure
>pdb|3TTZ|A Chain A, Crystal Structure Of A Topoisomerase Atpase Inhibitor Length = 198 Back     alignment and structure
>pdb|4B6C|A Chain A, Structure Of The M. Smegmatis Gyrb Atpase Domain In Complex With An Aminopyrazinamide Length = 196 Back     alignment and structure
>pdb|3G75|A Chain A, Crystal Structure Of Staphylococcus Aureus Gyrase B Co- Complexed With Inhibitor Length = 184 Back     alignment and structure
>pdb|4HZ0|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 213 Back     alignment and structure
>pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed With Inhibitor Length = 201 Back     alignment and structure
>pdb|2AWA|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec 2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae Tigr4 At 2.50 A Resolution Length = 390 Back     alignment and structure
>pdb|2AVT|A Chain A, Crystal Structure Of The Beta Subunit From Dna Polymerase Of Streptococcus Pyogenes Length = 378 Back     alignment and structure
>pdb|1S14|A Chain A, Crystal Structure Of Escherichia Coli Topoisomerase Iv Pare 24kda Subunit Length = 194 Back     alignment and structure
>pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit (Tm0262) From Thermotoga Maritima At 2.00 A Resolution Length = 378 Back     alignment and structure
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna Length = 763 Back     alignment and structure
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And Etoposide Length = 803 Back     alignment and structure
>pdb|3T0P|A Chain A, Crystal Structure Of A Putative Dna Polymerase Iii Beta Subunit (Eubrec_0002; Ere_29750) From Eubacterium Rectale Atcc 33656 At 2.26 A Resolution Length = 371 Back     alignment and structure
>pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 722 Back     alignment and structure
>pdb|3RB9|A Chain A, Crystal Structure Of The M. Tuberculosis Beta Clamp Length = 395 Back     alignment and structure
>pdb|3P16|A Chain A, Crystal Structure Of Dna Polymerase Iii Sliding Clamp Length = 408 Back     alignment and structure
>pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 Back     alignment and structure
>pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna Length = 759 Back     alignment and structure
>pdb|3CWV|A Chain A, Crystal Structure Of B-Subunit Of The Dna Gyrase From Myxococcus Xanthus Length = 369 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1161
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 0.0
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 0.0
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 0.0
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 0.0
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 0.0
3nuh_B420 DNA gyrase subunit B; topoisomerase, supercoiling, 1e-165
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 1e-139
4duh_A220 DNA gyrase subunit B; structure-based drug design, 1e-130
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 1e-120
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 1e-118
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 1e-107
3d1g_A366 DNA polymerase III subunit beta; chemical probe, D 1e-105
3k9f_C268 DNA topoisomerase 4 subunit B; quinolone, topoisom 1e-99
3k9f_C268 DNA topoisomerase 4 subunit B; quinolone, topoisom 2e-31
1vpk_A378 DNA polymerase III, beta subunit; TM0262, structur 4e-98
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 7e-95
2avt_A378 DNA polymerase III beta subunit; beta clamp, slidi 5e-93
3t0p_A371 DNA polymerase III, beta subunit; DNA clamp, struc 3e-92
3m4i_A242 DNA gyrase subunit B; GYRB, toprim, type II topois 3e-89
3m4i_A242 DNA gyrase subunit B; GYRB, toprim, type II topois 2e-35
3p16_A408 DNA polymerase III subunit beta; DNA polymerase II 2e-88
3qx3_A 803 DNA topoisomerase 2-beta; toprim domain, winged-he 1e-50
2xkj_E 767 Topoisomerase IV; type IIA topoisomerase; 2.20A {A 4e-50
2xkj_E 767 Topoisomerase IV; type IIA topoisomerase; 2.20A {A 1e-07
2xcs_B 692 DNA gyrase subunit B, DNA gyrase subunit A; isomer 1e-46
2xcs_B 692 DNA gyrase subunit B, DNA gyrase subunit A; isomer 3e-07
3l4j_A 757 DNA topoisomerase 2; topoisomerase, protein-DNA co 3e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 2e-04
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 391 Back     alignment and structure
 Score =  678 bits (1752), Expect = 0.0
 Identities = 214/411 (52%), Positives = 298/411 (72%), Gaps = 22/411 (5%)

Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
           +S  +SSI++L+GL+AVRKRP MYIGDT DGTGLHH VFE++DNAIDE+LAG+C +I VT
Sbjct: 2   NSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 61

Query: 405 IYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
           I++DNS+S+ D+GRGIP  I      +   SAAE++MT LHAGGKF+ NSYK+SGGLHG+
Sbjct: 62  IHADNSVSVQDDGRGIPTGIH----PEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 117

Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 524
           G+S VN LS+ L+L I R  KIH   +             +G+  +P+ + G+T K GT 
Sbjct: 118 GVSVVNALSQKLELVIQREGKIHRQIYE------------HGVPQAPLAVTGETEKTGTM 165

Query: 525 IHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFV 583
           + FW   + F+N+ EF YEIL KR+RELSFL++GV I L D+R  K++ F ++GG   FV
Sbjct: 166 VRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEGGIKAFV 225

Query: 584 SYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTH 643
            Y+NK+K  +HP IF       S +K+ I ++V++QWN+ + ENI CFTNNI Q DGGTH
Sbjct: 226 EYLNKNKTPIHPNIFY-----FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 280

Query: 644 LTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLV 703
           L G R+ +TR +N Y+++  + KK+K+   G+D REGL  V+S+K+PDPKF+SQTK+KLV
Sbjct: 281 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 340

Query: 704 SSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELT 754
           SSEV+  VE+ + + L ++L ENP ++K++  KII+AAR+REAAR+ RE+T
Sbjct: 341 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT 391
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Length = 390 Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Length = 408 Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390 Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Length = 369 Back     alignment and structure
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420 Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Length = 418 Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Length = 220 Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Length = 226 Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Length = 400 Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Length = 201 Back     alignment and structure
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A* Length = 366 Back     alignment and structure
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* Length = 268 Back     alignment and structure
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* Length = 268 Back     alignment and structure
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 Length = 378 Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Length = 198 Back     alignment and structure
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A* Length = 378 Back     alignment and structure
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale} Length = 371 Back     alignment and structure
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Length = 242 Back     alignment and structure
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Length = 242 Back     alignment and structure
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A* Length = 408 Back     alignment and structure
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} Length = 803 Back     alignment and structure
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 Back     alignment and structure
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 Back     alignment and structure
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Length = 692 Back     alignment and structure
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Length = 692 Back     alignment and structure
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1161
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 100.0
3nuh_B420 DNA gyrase subunit B; topoisomerase, supercoiling, 100.0
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 100.0
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 100.0
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 100.0
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 100.0
3k9f_C268 DNA topoisomerase 4 subunit B; quinolone, topoisom 100.0
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 100.0
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 100.0
3m4i_A242 DNA gyrase subunit B; GYRB, toprim, type II topois 100.0
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 100.0
2xkj_E 767 Topoisomerase IV; type IIA topoisomerase; 2.20A {A 100.0
3l4j_A 757 DNA topoisomerase 2; topoisomerase, protein-DNA co 100.0
3qx3_A 803 DNA topoisomerase 2-beta; toprim domain, winged-he 100.0
2xcs_B 692 DNA gyrase subunit B, DNA gyrase subunit A; isomer 100.0
4duh_A220 DNA gyrase subunit B; structure-based drug design, 100.0
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 100.0
3t0p_A371 DNA polymerase III, beta subunit; DNA clamp, struc 100.0
3p16_A408 DNA polymerase III subunit beta; DNA polymerase II 100.0
3d1g_A366 DNA polymerase III subunit beta; chemical probe, D 100.0
2avt_A378 DNA polymerase III beta subunit; beta clamp, slidi 100.0
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 100.0
1vpk_A378 DNA polymerase III, beta subunit; TM0262, structur 100.0
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 100.0
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 100.0
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 99.89
3aiz_C246 DNA polymerase sliding clamp C; protein-protein co 99.89
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 99.87
1rwz_A245 DNA polymerase sliding clamp; torus, processivity 99.87
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 99.87
1ud9_A245 DNA polymerase sliding clamp A; DNA-binding, DNA r 99.86
2ijx_A244 DNA polymerase sliding clamp A; PCNA3 subunit, pro 99.86
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 99.86
1iz5_A249 Proliferating cell nuclear antigen; DNA, replicati 99.86
3aiz_A248 DNA polymerase sliding clamp B; protein-protein co 99.85
1vpk_A378 DNA polymerase III, beta subunit; TM0262, structur 99.83
3k4x_A798 PCNA, proliferating cell nuclear antigen; DNA repl 99.83
2zvv_A276 PCNA 1, proliferating cellular nuclear antigen 1; 99.79
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 99.78
1plq_A258 Proliferating cell nuclear antigen (PCNA); DNA-bin 99.76
3fds_D245 DNA polymerase sliding clamp C; protein-protein co 99.75
1u7b_A261 PCNA, cyclin, proliferating cell nuclear antigen; 99.75
3ifv_A247 PCNA; processivity factor, sliding clamp, halophil 99.74
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 99.72
3lx2_A259 DNA polymerase sliding clamp 2; PCNA, DNA processi 99.65
3k4x_A798 PCNA, proliferating cell nuclear antigen; DNA repl 99.63
3p91_A265 Proliferating cell nuclear antigen; DNA binding pr 99.62
3p16_A408 DNA polymerase III subunit beta; DNA polymerase II 99.6
3t0p_A371 DNA polymerase III, beta subunit; DNA clamp, struc 99.6
3d1g_A366 DNA polymerase III subunit beta; chemical probe, D 99.58
2avt_A378 DNA polymerase III beta subunit; beta clamp, slidi 99.55
3aiz_C246 DNA polymerase sliding clamp C; protein-protein co 98.93
1iz5_A249 Proliferating cell nuclear antigen; DNA, replicati 98.86
1rwz_A245 DNA polymerase sliding clamp; torus, processivity 98.72
2zvv_A276 PCNA 1, proliferating cellular nuclear antigen 1; 98.72
2ijx_A244 DNA polymerase sliding clamp A; PCNA3 subunit, pro 98.7
3fds_D245 DNA polymerase sliding clamp C; protein-protein co 98.64
3aiz_A248 DNA polymerase sliding clamp B; protein-protein co 98.63
3lx2_A259 DNA polymerase sliding clamp 2; PCNA, DNA processi 98.62
1ud9_A245 DNA polymerase sliding clamp A; DNA-binding, DNA r 98.58
1plq_A258 Proliferating cell nuclear antigen (PCNA); DNA-bin 98.54
1u7b_A261 PCNA, cyclin, proliferating cell nuclear antigen; 98.49
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 98.47
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 98.47
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 98.46
3fds_C249 DNA polymerase sliding clamp B; protein-protein co 98.37
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 98.36
3p91_A265 Proliferating cell nuclear antigen; DNA binding pr 98.36
3ifv_A247 PCNA; processivity factor, sliding clamp, halophil 98.29
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 98.25
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 98.24
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 98.2
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 98.18
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 98.07
3peh_A281 Endoplasmin homolog; structural genomics, structur 97.97
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 97.9
3fds_C249 DNA polymerase sliding clamp B; protein-protein co 97.73
2cg9_A677 ATP-dependent molecular chaperone HSP82; chaperone 97.71
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 97.66
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 97.48
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 97.31
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 97.17
3a1j_A266 Cell cycle checkpoint control protein RAD9A; DNA d 97.08
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 97.07
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 96.96
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 96.92
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 96.85
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 96.81
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 96.8
3a1j_C263 Cell cycle checkpoint protein RAD1; DNA damage, DN 96.74
3zxo_A129 Redox sensor histidine kinase response regulator; 96.73
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 96.7
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 96.63
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 96.55
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 96.53
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 96.51
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 96.45
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 96.33
3g65_A296 Cell cycle checkpoint control protein RAD9A; PCNA, 96.31
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 96.27
3a1j_A266 Cell cycle checkpoint control protein RAD9A; DNA d 96.25
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 96.0
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 95.99
3a1j_C263 Cell cycle checkpoint protein RAD1; DNA damage, DN 95.97
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 95.89
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 95.87
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 95.84
1b77_A228 GP45, protein (sliding clamp); replisome; 2.10A {E 95.4
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 95.24
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 94.0
3a1j_B281 HHUS1, checkpoint protein HUS1; DNA damage, DNA re 93.58
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 91.95
3g65_A296 Cell cycle checkpoint control protein RAD9A; PCNA, 90.54
3a1j_B281 HHUS1, checkpoint protein HUS1; DNA damage, DNA re 80.97
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=2.6e-163  Score=1562.73  Aligned_cols=538  Identities=24%  Similarity=0.372  Sum_probs=448.8

Q ss_pred             ccccCcchhhccccccceeeccceEEeecCCC----------------------CccchhHHhHHHhhHhhhcCCC-CCe
Q psy13360        344 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDG----------------------TGLHHFVFEILDNAIDESLAGY-CTK  400 (1161)
Q Consensus       344 ~~~y~~~~i~~L~~~e~vrkRP~mYiGs~~~~----------------------~gl~hlv~EivdNsiDe~~~g~-~~~  400 (1161)
                      +..|.++.||+|+||||||||||||||||+..                      +|||||||||||||+||++||+ |+.
T Consensus         4 ~~~~~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~   83 (1177)
T 4gfh_A            4 EPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKR   83 (1177)
T ss_dssp             ---CHHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred             CCCchhhcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCe
Confidence            34567778999999999999999999999873                      3999999999999999999997 699


Q ss_pred             EEEEEec-CCcEEEEECCCccccccccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEE
Q psy13360        401 INVTIYS-DNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLT  479 (1161)
Q Consensus       401 I~V~i~~-dgsisV~DnGrGIPv~~~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~  479 (1161)
                      |+|+||. ||||+|+||||||||++||+    +|+|+||+|||+||||||||+++|++||||||||+|||||||+||.|+
T Consensus        84 I~V~i~~~d~sisV~DnGRGIPvd~h~~----~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~~~ve  159 (1177)
T 4gfh_A           84 IDVNIHAEEHTIEVKNDGKGIPIEIHNK----ENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILE  159 (1177)
T ss_dssp             EEEEEETTTTEEEEEECSSCCCCSBCTT----TCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEEEEEE
T ss_pred             EEEEEECCCCEEEEEecCCcccccccCC----CCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCceEEE
Confidence            9999995 99999999999999999999    999999999999999999999999999999999999999999999998


Q ss_pred             EE--eCCEEEEEEEEcCccccccccccCCccccCcEEecc--CCCCCcEEEEEeCccccccCCCCHHHHHHHHHhhhccC
Q psy13360        480 IN--RNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD--TNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLN  555 (1161)
Q Consensus       480 v~--r~g~~~~q~f~~G~~~~~~~~~~~~~~~~~~~~~g~--~~~~GT~V~F~PD~~iF~~~~~~~~~l~~Rl~elA~ln  555 (1161)
                      |+  |+|+.|+|+|++|            .++.++..++.  ..++||+|+||||++||++..|+++++..|++++|+||
T Consensus       160 v~~~r~Gk~y~q~f~~g------------~~~~~~~~i~~~~~~~tGT~V~F~PD~~iF~~~~~~~d~l~~~~r~~~~l~  227 (1177)
T 4gfh_A          160 TADLNVGQKYVQKWENN------------MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDIN  227 (1177)
T ss_dssp             EEETTTTEEEEEEEETT------------TTEECCCEEEECCSSCCCEEEEEEECHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCEEEEEEEECC------------cccCCCCeeecCCCCCCceEEEEEeCHHhcCCcEeCHHHHHHHHHHHHHhc
Confidence            85  8999999999999            44444444443  34689999999999999999999999999999999987


Q ss_pred             C---CcEEEEeecccceEEEEEeCCchhhhhhhhhcCCcccCCc-------eEEEeeccccccCCceEEEEEEeecCCCc
Q psy13360        556 N---GVCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPT-------IFQAIGNKISEKKNNINIDVSMQWNNSYN  625 (1161)
Q Consensus       556 p---gl~i~l~d~r~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~veva~~~~~~~~  625 (1161)
                      +   ++.+.+++++.   ..++|++|+.+|+++++..+...+..       +..+..+.     .+..||||++|++++.
T Consensus       228 ~~~~~~~~~~~g~~~---~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~-----~~~~~eva~~~~d~~~  299 (1177)
T 4gfh_A          228 GSVRDINVYLNGKSL---KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER-----INNRWEVAFAVSDISF  299 (1177)
T ss_dssp             HHSSSCEEEESSCBC---CCCSHHHHHGGGTTTC-----------------CCSCEEEE-----EETTEEEEEEECSSSC
T ss_pred             CCCceEEEEecCCee---EEeeccchhhhhhhhhccceeccccccccccCCCceEEEEe-----ccceEEEeecccCCcc
Confidence            5   46788888764   35789999999999988665433321       11112222     3456999999998775


Q ss_pred             ceeeeeecccccCCCCchhHHHHHHHHHHHHHHHHHhcccccccccCChhhHhcceEEEEEEeecCCCcccccccccccc
Q psy13360        626 ENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSS  705 (1161)
Q Consensus       626 e~~~SFvN~I~T~~GGtHv~g~~~alt~~in~~~~~~~l~Kk~~~~~~~~diregL~~vvsv~i~~P~FegQTK~kL~n~  705 (1161)
                      + ++||||||+|++||||++||++||+++||+|+.+     +++.+++++|||+||++||||+++||||+||||+||+|+
T Consensus       300 ~-~~SFvN~I~T~~GGTHv~gfr~altr~in~~~~k-----~~~~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~  373 (1177)
T 4gfh_A          300 Q-QISFVNSIATTMGGTHVNYITDQIVKKISEILKK-----KKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTR  373 (1177)
T ss_dssp             E-EEEEESSCEETTEEHHHHHHHHHHHHHHHHHHHH-----HSSSCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCC
T ss_pred             e-eeeeeeeeecCCCchHHHHHHHHHHHHHHHHhhh-----hccccCCHHHHhCCceEEEEeeeccCccccchhhhhcCc
Confidence            4 5799999999999999999999999999999854     334679999999999999999999999999999999998


Q ss_pred             cccchhHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccCccccCC---CCCCCcceE
Q psy13360        706 EVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQ---EKNPELCEL  782 (1161)
Q Consensus       706 ~v~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~~~~~ar~aa~~a~~~~r~k~~~~~~~lpgKl~dc~---~~~~~~~eL  782 (1161)
                      .........+.   ..|+.  +...+.|+++++++|++|+++++++...++|+.+  .++| ||+||+   ++||++|||
T Consensus       374 ~~~~~~~~~~~---~~~~~--~~~~~~i~~~~~~~a~~~~~~~~~k~~~~~k~~~--~~~~-KL~d~~~~~skd~~~~EL  445 (1177)
T 4gfh_A          374 VKDFGSRCEIP---LEYIN--KIMKTDLATRMFEIADANEENALKKSDGTRKSRI--TNYP-KLEDANKAGTKEGYKCTL  445 (1177)
T ss_dssp             GGGSSSCCCCC---HHHHH--HHTTSHHHHHHHHHHTTCC------------CCC--CSCT-TCBCCTTTTTTTTTTCEE
T ss_pred             hhcceeeccch---HHHhh--hhhhHHHHHHHHHHHHHHHHHHHHhhhhhcchhh--cccc-ccccccccCCCCccceEE
Confidence            55433322221   12222  2223468888898888877666666555555543  3344 898887   689999999


Q ss_pred             EEEeccCCCccccccc---CCcceEeeccCCccccccccchhHHhccHhHHHHHHHhCCCCCCCCCcccccccceEEEee
Q psy13360        783 YIVEGDSAGGSVKQGR---DRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMT  859 (1161)
Q Consensus       783 ~ivEGDSA~gsak~gr---dr~~qailPLrGKilNv~ka~~~ki~~n~Ei~~l~~alG~~~~~~~~~~~~lRY~kiiimt  859 (1161)
                      |||||||||||||+||   +|+|||||||||||||||||+.+||++|+||++|++|||||+|.+.+|+++||||||||||
T Consensus       446 fiVEGDSAgGsAk~Grak~~Rd~QAIlPLRGKiLNv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMT  525 (1177)
T 4gfh_A          446 VLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMT  525 (1177)
T ss_dssp             EEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEEC
T ss_pred             EEecCCchhhhHhhcccccCcccEEecccCceechhhhhHHHHHhhcHHHHHHHHHhCCCcCcccCccccCCCCeEEEee
Confidence            9999999999999999   8999999999999999999999999999999999999999999655599999999999999


Q ss_pred             cCCCCChhhHHHHHHHHHHhcHhhhh-cCcEEEEcCcEEEEEeCC---cceeecCHHHHHHHHH
Q psy13360        860 DADIDGAHIRALLLTFFYRKMPKLIE-YGYIYIAQPPLYKIKYGN---NECYLRDDIEEERYML  919 (1161)
Q Consensus       860 DaD~DG~HI~~Llltff~~~~p~Li~-~g~v~~~~~Pl~kv~~gk---~~~y~~~~~e~~~~~~  919 (1161)
                      ||||||+|||||||||||||||+||+ +||||+|+||||||+.||   ...|||+++|+++|..
T Consensus       526 DADvDGsHIrtLLltfF~r~~p~Lie~~G~vyia~pPLykv~~~k~~k~~~~~y~~~e~e~~~~  589 (1177)
T 4gfh_A          526 DQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWRE  589 (1177)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHHHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHHHHhChhhEeeCCEEEEEecceEEEEEecCCcceEEEechHHHHHHHH
Confidence            99999999999999999999999999 899999999999998654   4579999999999964
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Back     alignment and structure
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Back     alignment and structure
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A* Back     alignment and structure
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale} Back     alignment and structure
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A* Back     alignment and structure
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A* Back     alignment and structure
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A* Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A* Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A* Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2 Back     alignment and structure
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C* Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A* Back     alignment and structure
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B* Back     alignment and structure
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 Back     alignment and structure
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B Back     alignment and structure
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B* Back     alignment and structure
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A* Back     alignment and structure
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis} Back     alignment and structure
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica} Back     alignment and structure
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A* Back     alignment and structure
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale} Back     alignment and structure
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A* Back     alignment and structure
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A* Back     alignment and structure
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A* Back     alignment and structure
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A* Back     alignment and structure
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A* Back     alignment and structure
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A Back     alignment and structure
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C* Back     alignment and structure
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B* Back     alignment and structure
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B* Back     alignment and structure
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis} Back     alignment and structure
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2 Back     alignment and structure
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B Back     alignment and structure
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A* Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C* Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica} Back     alignment and structure
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C* Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>1b77_A GP45, protein (sliding clamp); replisome; 2.10A {Enterobacteria phage RB69} SCOP: d.131.1.2 d.131.1.2 PDB: 1b8h_A* 1czd_A* 3u5z_G* 3u60_G* 3u61_G* Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens} Back     alignment and structure
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1161
d1ei1a2219 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli 3e-73
d1kija2212 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermoph 7e-61
d1bjta_ 760 e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra 1e-54
d1s14a_168 d.122.1.2 (A:) Topoisomerase IV subunit B {Escheri 2e-49
d1ei1a1172 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia col 2e-49
d1kija1172 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermop 6e-41
d1s16a1167 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B 2e-37
d1pvga2239 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's 6e-36
d1ok7a1122 d.131.1.1 (A:1-122) DNA polymerase III, beta subun 8e-23
d1pvga1161 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's 2e-21
d1ok7a2122 d.131.1.1 (A:123-244) DNA polymerase III, beta sub 2e-21
d1vpka2123 d.131.1.1 (A:121-243) DNA polymerase III, beta sub 5e-21
d1vpka1120 d.131.1.1 (A:1-120) DNA polymerase III, beta subun 8e-20
d1ok7a3122 d.131.1.1 (A:245-366) DNA polymerase III, beta sub 1e-05
d1vpka3123 d.131.1.1 (A:244-366) DNA polymerase III, beta sub 3e-05
d2hkja3219 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A 9e-05
d1h7sa2203 d.122.1.2 (A:29-231) DNA mismatch repair protein P 5e-04
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Length = 219 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA gyrase B
species: Escherichia coli [TaxId: 562]

 Score =  240 bits (613), Expect = 3e-73
 Identities = 124/234 (52%), Positives = 168/234 (71%), Gaps = 17/234 (7%)

Query: 345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVT 404
           +S  +SSI++L+GL+AVRKRP MYIGDT DGTGLHH VFE++DNAIDE+LAG+C +I VT
Sbjct: 2   NSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 61

Query: 405 IYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 464
           I++DNS+S+ D+GRGIP  I      +   SAAE++MT LHAGGKF+ NSYK+SGGLHG+
Sbjct: 62  IHADNSVSVQDDGRGIPTGI----HPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 117

Query: 465 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 524
           G+S VN LS+ L+L I R  KIH   +             +G+  +P+ + G+T K GT 
Sbjct: 118 GVSVVNALSQKLELVIQREGKIHRQIYE------------HGVPQAPLAVTGETEKTGTM 165

Query: 525 IHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG 577
           + FW   + F+N+ EF YEIL KR+RELSFL++GV I L D+R  K++ F ++G
Sbjct: 166 VRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG 219
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 212 Back     information, alignment and structure
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Length = 168 Back     information, alignment and structure
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} Length = 172 Back     information, alignment and structure
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 172 Back     information, alignment and structure
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Length = 167 Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 Back     information, alignment and structure
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161 Back     information, alignment and structure
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Length = 123 Back     information, alignment and structure
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Length = 120 Back     information, alignment and structure
>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Length = 123 Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1161
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 100.0
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 100.0
d1bjta_ 760 DNA topoisomerase II, C-terminal fragment (residue 100.0
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 100.0
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 100.0
d1ei1a1172 DNA gyrase B {Escherichia coli [TaxId: 562]} 100.0
d1kija1172 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 100.0
d1s16a1167 Topoisomerase IV subunit B {Escherichia coli [TaxI 100.0
d1pvga1161 DNA topoisomerase II {Baker's yeast (Saccharomyces 99.91
d1vpka2123 DNA polymerase III, beta subunit {Thermotoga marit 99.88
d1ok7a2122 DNA polymerase III, beta subunit {Escherichia coli 99.87
d1ok7a1122 DNA polymerase III, beta subunit {Escherichia coli 99.87
d1vpka1120 DNA polymerase III, beta subunit {Thermotoga marit 99.86
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.61
d1ok7a1122 DNA polymerase III, beta subunit {Escherichia coli 99.44
d1vpka1120 DNA polymerase III, beta subunit {Thermotoga marit 99.43
d1vpka3123 DNA polymerase III, beta subunit {Thermotoga marit 99.41
d1ok7a3122 DNA polymerase III, beta subunit {Escherichia coli 99.41
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.34
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 99.31
d1vpka2123 DNA polymerase III, beta subunit {Thermotoga marit 99.05
d1ok7a2122 DNA polymerase III, beta subunit {Escherichia coli 98.96
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 97.68
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 97.61
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 97.2
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 97.19
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 97.18
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 97.18
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 97.06
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 97.03
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 97.03
d1vpka3123 DNA polymerase III, beta subunit {Thermotoga marit 96.93
d1ok7a3122 DNA polymerase III, beta subunit {Escherichia coli 96.88
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 96.85
d1rwza1122 Proliferating cell nuclear antigen (PCNA) {Archaeo 96.42
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 95.77
d1rwza1122 Proliferating cell nuclear antigen (PCNA) {Archaeo 95.39
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 94.8
d1iz5a1119 Proliferating cell nuclear antigen (PCNA) {Archaeo 93.95
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 93.17
d1ud9a1119 Proliferating cell nuclear antigen (PCNA) {Archaeo 92.26
d1plqa1126 Proliferating cell nuclear antigen (PCNA) {Baker's 91.63
d1u7ba1126 Proliferating cell nuclear antigen (PCNA) {Human ( 90.8
d1u7ba2129 Proliferating cell nuclear antigen (PCNA) {Human ( 89.02
d1ud9a1119 Proliferating cell nuclear antigen (PCNA) {Archaeo 88.81
d1iz5a2121 Proliferating cell nuclear antigen (PCNA) {Archaeo 87.99
d1plqa2132 Proliferating cell nuclear antigen (PCNA) {Baker's 86.61
d1rwza2122 Proliferating cell nuclear antigen (PCNA) {Archaeo 85.89
d1u7ba1126 Proliferating cell nuclear antigen (PCNA) {Human ( 85.2
d1iz5a1119 Proliferating cell nuclear antigen (PCNA) {Archaeo 85.2
d1plqa1126 Proliferating cell nuclear antigen (PCNA) {Baker's 83.03
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA gyrase B
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.5e-67  Score=560.53  Aligned_cols=217  Identities=57%  Similarity=0.957  Sum_probs=209.5

Q ss_pred             cccCcchhhccccccceeeccceEEeecCCCCccchhHHhHHHhhHhhhcCCCCCeEEEEEecCCcEEEEECCCcccccc
Q psy13360        345 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHFVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPIDI  424 (1161)
Q Consensus       345 ~~y~~~~i~~L~~~e~vrkRP~mYiGs~~~~~gl~hlv~EivdNsiDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~~  424 (1161)
                      +.|++++|++|+++||||||||||||||+..+|||||+|||||||+||+++|+|+.|.|+++.||+|+|+|||||||+++
T Consensus         2 ~~~~~~~i~~L~~lE~Vr~RP~mYiGs~~~~~gl~~l~~Eil~Na~De~~~~~~~~i~v~i~~dgsIsV~ddGrGIPv~~   81 (219)
T d1ei1a2           2 NSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGI   81 (219)
T ss_dssp             CCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred             CcCCHhhCeeecchhHHHhCCCcEEccCCCcccchhhhHhHhhhhhhhhcCCCccceeEEEcCCCeEEEEECCccccccc
Confidence            67999999999999999999999999998657999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCcceEEEEeeecccCCCCCCceeeecccccchhhHhhhhccEEEEEEEeCCEEEEEEEEcCcccccccccc
Q psy13360        425 KIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTI  504 (1161)
Q Consensus       425 ~~~~~~~~~~~~~e~v~t~l~ag~kfd~~~yk~sgGlhGvG~svvNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~  504 (1161)
                      ||+    +++|+||+|||+||||+|||+++|++|||+||||+|||||||++|+|+++|+|+.|+|+|++|          
T Consensus        82 h~~----~~~~~~e~if~~l~tg~~fd~~~~~~sgG~nGvG~~~~NalS~~f~v~~~r~g~~y~q~f~~g----------  147 (219)
T d1ei1a2          82 HPE----EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHG----------  147 (219)
T ss_dssp             CTT----TSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETT----------
T ss_pred             cCc----cCCchhhhhhhhhhhccCCCCCcceeEcCccccceeEEEEeeeEEEEEEEECCEEEEEEEeCC----------
Confidence            999    999999999999999999999999999999999999999999999999999999999999999          


Q ss_pred             CCccccCcEEeccCCCCCcEEEEEeCcccccc-CCCCHHHHHHHHHhhhccCCCcEEEEeecccceEEEEEeCC
Q psy13360        505 NGISVSPIKIIGDTNKQGTKIHFWVDEKIFSN-IEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG  577 (1161)
Q Consensus       505 ~~~~~~~~~~~g~~~~~GT~V~F~PD~~iF~~-~~~~~~~l~~Rl~elA~lnpgl~i~l~d~r~~~~~~f~~~~  577 (1161)
                        .+..|+.+++.++++||+|+|+||+++|+. ..|++++|.+|++++|||||||+|+|+|+|.++++.|||+|
T Consensus       148 --~~~~~~~~~~~~~~~gT~I~F~PD~~iF~~~~~~~~~~l~~R~~dlA~L~~Gl~V~lnder~~~~~~f~~~G  219 (219)
T d1ei1a2         148 --VPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG  219 (219)
T ss_dssp             --EESSCCEEEEECSCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCS
T ss_pred             --eECCCceeccCcCCCCEEEEEEECccccCCcccccHHHHHHHHHHHcccCCCcEEEEEEcCCCcEEEEECCC
Confidence              677788888888899999999999999965 58999999999999999999999999999999999999986
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure