Psyllid ID: psy13371
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 212 | 2.2.26 [Sep-21-2011] | |||||||
| Q80W68 | 789 | Kin of IRRE-like protein | yes | N/A | 0.622 | 0.167 | 0.273 | 2e-07 | |
| Q6X936 | 789 | Kin of IRRE-like protein | yes | N/A | 0.622 | 0.167 | 0.273 | 2e-07 | |
| Q96J84 | 757 | Kin of IRRE-like protein | yes | N/A | 0.622 | 0.174 | 0.273 | 5e-07 | |
| P16573 | 519 | Carcinoembryonic antigen- | no | N/A | 0.481 | 0.196 | 0.296 | 5e-07 | |
| Q8IZU9 | 778 | Kin of IRRE-like protein | no | N/A | 0.570 | 0.155 | 0.304 | 9e-07 | |
| Q8BR86 | 778 | Kin of IRRE-like protein | no | N/A | 0.584 | 0.159 | 0.304 | 9e-07 | |
| A2ASS6 | 35213 | Titin OS=Mus musculus GN= | no | N/A | 0.575 | 0.003 | 0.298 | 1e-06 | |
| Q99PJ0 | 344 | Neurotrimin OS=Mus muscul | no | N/A | 0.702 | 0.433 | 0.295 | 4e-06 | |
| Q62718 | 344 | Neurotrimin OS=Rattus nor | no | N/A | 0.683 | 0.421 | 0.296 | 6e-06 | |
| Q9P121 | 344 | Neurotrimin OS=Homo sapie | no | N/A | 0.702 | 0.433 | 0.295 | 7e-06 |
| >sp|Q80W68|KIRR1_MOUSE Kin of IRRE-like protein 1 OS=Mus musculus GN=Kirrel PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAE--ILGSPD 95
R+ + + ++ L I A+ D YECQ + +RS L V++P E I G P
Sbjct: 103 RYRVVGSADAGQYNLEITDAELSDDASYECQATEAALRSRRAKLTVLIPPEETRIDGGPV 162
Query: 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE-----KGEVTTS 150
+ + G+ NLTC ++ +P A I W+ + + G TE K E T S
Sbjct: 163 ILLQAGTPYNLTCR-AFNAKPAATIIWFRD------GTQQEGAVTSTELLKDGKRETTIS 215
Query: 151 YLLIQQAELKDSGKYSCSPSNADVAS 176
LLI+ +L ++C N + +
Sbjct: 216 QLLIEPTDLDIGRVFTCRSMNEAIPN 241
|
Plays a significant role in the normal development and function of the glomerular permeability. Is a signaling protein that needs the presence of TEC kinases to fully trans-activate the transcription factor AP-1. Mus musculus (taxid: 10090) |
| >sp|Q6X936|KIRR1_RAT Kin of IRRE-like protein 1 OS=Rattus norvegicus GN=Kirrel PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAE--ILGSPD 95
R+ + + ++ L I A+ D YECQ + +RS L V++P + I G P
Sbjct: 103 RYRVVGSADAGQYNLEITDAELSDDASYECQATEAALRSRRAKLTVLIPPEDTRIDGGPV 162
Query: 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE-----KGEVTTS 150
+ + G+ NLTC ++ +P A I W+ + + G TE K E T S
Sbjct: 163 ILLQAGTPYNLTCR-AFNAKPAATIIWFRD------GTQQEGAVTSTELLKDGKRETTIS 215
Query: 151 YLLIQQAELKDSGKYSCSPSNADVAS 176
LLIQ +L ++C N + +
Sbjct: 216 QLLIQPTDLDIGRVFTCRSMNEAIPN 241
|
Plays a significant role in the normal development and function of the glomerular permeability. Is a signaling protein that needs the presence of TEC kinases to fully trans-activate the transcription factor AP-1. Rattus norvegicus (taxid: 10116) |
| >sp|Q96J84|KIRR1_HUMAN Kin of IRRE-like protein 1 OS=Homo sapiens GN=KIRREL PE=1 SV=2 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAE--ILGSPD 95
R+ + + ++ L I A+ D YECQ + +RS L V++P + I G P
Sbjct: 71 RYRVVGSADAGQYNLEITDAELSDDASYECQATEAALRSRRAKLTVLIPPEDTRIDGGPV 130
Query: 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE-----KGEVTTS 150
+ + G+ NLTC ++ +P A I W+ + + G TE K E T S
Sbjct: 131 ILLQAGTPHNLTCR-AFNAKPAATIIWFRD------GTQQEGAVASTELLKDGKRETTVS 183
Query: 151 YLLIQQAELKDSGKYSCSPSNADVAS 176
LLI +L ++C N + S
Sbjct: 184 QLLINPTDLDIGRVFTCRSMNEAIPS 209
|
Plays a significant role in the normal development and function of the glomerular permeability. Signaling protein that needs the presence of TEC kinases to fully trans-activate the transcription factor AP-1. Homo sapiens (taxid: 9606) |
| >sp|P16573|CEAM1_RAT Carcinoembryonic antigen-related cell adhesion molecule 1 OS=Rattus norvegicus GN=Ceacam1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 23/125 (18%)
Query: 46 EGDEWTLHIKWAQKRDAGVYECQLSTQPV--RSFFVNLNVVV-PTAEILGSPDLHVDEGS 102
EG+ TL + ++ D G YEC+ RS NL+V+ P A ++ PD+++ +GS
Sbjct: 195 EGNR-TLTLLNVRRTDKGYYECEARNPATFNRSDPFNLDVIYGPDAPVISPPDIYLHQGS 253
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162
+NL+C + PPA FW +I EK + ++ L I +S
Sbjct: 254 NLNLSCHADSN--PPAQYFW-----------------LINEKLQTSSQELFISNITTNNS 294
Query: 163 GKYSC 167
G Y+C
Sbjct: 295 GTYAC 299
|
This protein is a calcium-independent cell adhesion molecule with homophilic binding properties. May play a role in the formation and maintenance of the specialized membrane structure of the apical surface of the hepatocytes. Rattus norvegicus (taxid: 10116) |
| >sp|Q8IZU9|KIRR3_HUMAN Kin of IRRE-like protein 3 OS=Homo sapiens GN=KIRREL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 52 LHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAE--ILGSPDLHVDEGSTINLTCS 109
L I A+ +D VYECQ +RS L V+VP + ILG P + + G +NLTC
Sbjct: 112 LKILRAELQDDAVYECQAIQAAIRSRPARLTVLVPPDDPVILGGPVISLRAGDPLNLTCH 171
Query: 110 IKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169
+ +P A I W EVI+ ++ + K E S L I ++++ C
Sbjct: 172 ADNA-KPAASIIWLRKGEVIN-GATYSKTLLRDGKRESIVSTLFISPGDVENGQSIVCRA 229
Query: 170 SNADV 174
+N +
Sbjct: 230 TNKAI 234
|
Could be involved in the hematopoietic supportive capacity of stroma cells. Homo sapiens (taxid: 9606) |
| >sp|Q8BR86|KIRR3_MOUSE Kin of IRRE-like protein 3 OS=Mus musculus GN=Kirrel3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 49 EWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAE--ILGSPDLHVDEGSTINL 106
E L I A+ +D VYECQ +RS L V+VP + ILG P + + G +NL
Sbjct: 109 EHHLKILRAELQDDAVYECQAIQAAIRSRPARLTVLVPPDDPIILGGPVISLRAGDPLNL 168
Query: 107 TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166
TC + +P A I W EVI+ ++ + K E S L I ++++
Sbjct: 169 TCHADNA-KPAASIIWLRKGEVIN-GATYSKTLLRDGKRESIVSTLFISPGDVENGQSIV 226
Query: 167 CSPSNADV 174
C +N +
Sbjct: 227 CRATNKAI 234
|
Could be involved in the hematopoietic supportive capacity of stroma cells. The secreted extracellular domain is directly responsible for supporting hematopoietic stem cells. Mus musculus (taxid: 10090) |
| >sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 61 DAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYI 120
D Y C++ T L + L +L V EG TI L C + +P A +
Sbjct: 14228 DEAEYSCEVRTARTSGMLTVLEEEAVFTKNLA--NLEVSEGDTIKLVCEVS---KPGAEV 14282
Query: 121 FWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS-PSNADVASVYV 179
WY DE I G ++T+ + L+IQ A+L+D+G Y+C PS+ + V V
Sbjct: 14283 IWYKGDEEII---ETGRFEILTDGRK---RILIIQNAQLEDAGSYNCRLPSSRTDSKVKV 14336
Query: 180 HVLNGEYTGWSESL 193
H L E+ ++L
Sbjct: 14337 HELAAEFISKPQNL 14350
|
Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q99PJ0|NTRI_MOUSE Neurotrimin OS=Mus musculus GN=Ntm PE=2 SV=2 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 13 TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
TRV+W+ I L G+ + D R + + ++++ I+ D G Y C + T
Sbjct: 64 TRVAWLNRSTI--LYAGNDKWCLDPRVVLLSNTQ-TQYSIEIQNVDVYDEGPYTCSVQTD 120
Query: 73 P-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
++ V+L V V + S D+ ++EG+ I+LTC PEP + W H
Sbjct: 121 NHPKTSRVHLIVQVSPKIVEISSDISINEGNNISLTCIATGRPEP--TVTWRH------- 171
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVH 180
S V ++E YL IQ + SG+Y CS SN DVA+ V
Sbjct: 172 -ISPKAVGFVSED-----EYLEIQGITREQSGEYECSASN-DVAAPVVR 213
|
Neural cell adhesion molecule. Mus musculus (taxid: 10090) |
| >sp|Q62718|NTRI_RAT Neurotrimin OS=Rattus norvegicus GN=Ntm PE=1 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 20/165 (12%)
Query: 13 TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
TRV+W+ I L G+ + D R + + ++++ I+ D G Y C + T
Sbjct: 64 TRVAWLNRSTI--LYAGNDKWCLDPRVVLLSNTQ-TQYSIEIQNVDVYDEGPYTCSVQTD 120
Query: 73 P-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
++ V+L V V + S D+ ++EG+ I+LTC PEP + W H
Sbjct: 121 NHPKTSRVHLIVQVSPKIVEISSDISINEGNNISLTCIATGRPEP--TVTWRH------- 171
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVAS 176
S V ++E YL IQ + SG+Y CS SN DVA+
Sbjct: 172 -ISPKAVGFVSED-----EYLEIQGITREQSGEYECSASN-DVAA 209
|
Neural cell adhesion molecule. Rattus norvegicus (taxid: 10116) |
| >sp|Q9P121|NTRI_HUMAN Neurotrimin OS=Homo sapiens GN=NTM PE=1 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 20/169 (11%)
Query: 13 TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
TRV+W+ I L G+ + D R + + ++++ I+ D G Y C + T
Sbjct: 64 TRVAWLNRSTI--LYAGNDKWCLDPRVVLLSNTQ-TQYSIEIQNVDVYDEGPYTCSVQTD 120
Query: 73 P-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
++ V+L V V + S D+ ++EG+ I+LTC PEP + W H
Sbjct: 121 NHPKTSRVHLIVQVSPKIVEISSDISINEGNNISLTCIATGRPEP--TVTWRH------- 171
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVH 180
S V ++E YL IQ + SG Y CS SN DVA+ V
Sbjct: 172 -ISPKAVGFVSED-----EYLEIQGITREQSGDYECSASN-DVAAPVVR 213
|
Neural cell adhesion molecule. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 212 | ||||||
| 91076100 | 310 | PREDICTED: similar to dpr6 CG14162-PA [T | 0.849 | 0.580 | 0.822 | 3e-85 | |
| 270014584 | 450 | hypothetical protein TcasGA2_TC004621 [T | 0.849 | 0.4 | 0.822 | 1e-84 | |
| 195012753 | 380 | GH16056 [Drosophila grimshawi] gi|193897 | 0.948 | 0.528 | 0.743 | 1e-84 | |
| 195126190 | 332 | GI12319 [Drosophila mojavensis] gi|19391 | 0.896 | 0.572 | 0.765 | 2e-84 | |
| 195493105 | 390 | GE21735 [Drosophila yakuba] gi|194180377 | 0.948 | 0.515 | 0.738 | 3e-84 | |
| 195169196 | 282 | GL12584 [Drosophila persimilis] gi|19846 | 0.853 | 0.641 | 0.801 | 3e-84 | |
| 442631516 | 390 | dpr6, isoform C [Drosophila melanogaster | 0.948 | 0.515 | 0.738 | 5e-84 | |
| 242015686 | 253 | conserved hypothetical protein [Pediculu | 0.844 | 0.707 | 0.794 | 1e-83 | |
| 24662101 | 283 | dpr6, isoform A [Drosophila melanogaster | 0.853 | 0.639 | 0.795 | 3e-83 | |
| 195589223 | 380 | GD14231 [Drosophila simulans] gi|1941963 | 0.853 | 0.476 | 0.795 | 4e-83 |
| >gi|91076100|ref|XP_968498.1| PREDICTED: similar to dpr6 CG14162-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 148/180 (82%), Positives = 164/180 (91%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+++ L VSWIRHRDIHILTVGSYTYTSDQRF A H E DEWTL IKWAQKRDAG+Y
Sbjct: 83 RVRNLGNKTVSWIRHRDIHILTVGSYTYTSDQRFQANHHPETDEWTLQIKWAQKRDAGIY 142
Query: 66 ECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
ECQ+STQPVRS+FVNLNVVVPTA+ILG PDLHVD+GSTINLTCSI++SPEPPAYIFWYH
Sbjct: 143 ECQISTQPVRSYFVNLNVVVPTAQILGGPDLHVDKGSTINLTCSIRFSPEPPAYIFWYHR 202
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
D+VISYDS+RGGVSVITEKG+VTTS+LLIQ A++ DSGKYSCSPSNADVASV VHVLNGE
Sbjct: 203 DDVISYDSNRGGVSVITEKGDVTTSFLLIQHADISDSGKYSCSPSNADVASVRVHVLNGE 262
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270014584|gb|EFA11032.1| hypothetical protein TcasGA2_TC004621 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/180 (82%), Positives = 164/180 (91%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+++ L VSWIRHRDIHILTVGSYTYTSDQRF A H E DEWTL IKWAQKRDAG+Y
Sbjct: 223 RVRNLGNKTVSWIRHRDIHILTVGSYTYTSDQRFQANHHPETDEWTLQIKWAQKRDAGIY 282
Query: 66 ECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
ECQ+STQPVRS+FVNLNVVVPTA+ILG PDLHVD+GSTINLTCSI++SPEPPAYIFWYH
Sbjct: 283 ECQISTQPVRSYFVNLNVVVPTAQILGGPDLHVDKGSTINLTCSIRFSPEPPAYIFWYHR 342
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
D+VISYDS+RGGVSVITEKG+VTTS+LLIQ A++ DSGKYSCSPSNADVASV VHVLNGE
Sbjct: 343 DDVISYDSNRGGVSVITEKGDVTTSFLLIQHADISDSGKYSCSPSNADVASVRVHVLNGE 402
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195012753|ref|XP_001983739.1| GH16056 [Drosophila grimshawi] gi|193897221|gb|EDV96087.1| GH16056 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 151/203 (74%), Positives = 173/203 (85%), Gaps = 2/203 (0%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+++ L VSWIRHRDIHILTVGSYTYTSDQRF A H ++ D+WTL IKWAQKRDAG+Y
Sbjct: 89 RVRNLANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTDDWTLQIKWAQKRDAGMY 148
Query: 66 ECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
ECQ+STQPVRS+FV LNVVVPTA ILG PDLHVD+GSTINLTC++K+SPEPPAYIFWYHH
Sbjct: 149 ECQISTQPVRSYFVRLNVVVPTATILGGPDLHVDKGSTINLTCTVKFSPEPPAYIFWYHH 208
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
+EVI+YDSSRGGVSVITEKG+VTTS+LLIQ A+L DSGKYSC+PSNADVASV VHVLNGE
Sbjct: 209 EEVINYDSSRGGVSVITEKGDVTTSFLLIQNADLADSGKYSCAPSNADVASVRVHVLNGE 268
Query: 186 YTGWSE--SLGTQTKYLTFTNLF 206
+ + S G Q +LT L
Sbjct: 269 HPEAMQTGSSGCQYSWLTIVMLL 291
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195126190|ref|XP_002007557.1| GI12319 [Drosophila mojavensis] gi|193919166|gb|EDW18033.1| GI12319 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 150/196 (76%), Positives = 170/196 (86%), Gaps = 6/196 (3%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+++ L VSWIRHRDIHILTVGSYTYTSDQRF A H ++ D+WTL IKWAQKRDAG+Y
Sbjct: 81 RVRNLANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTDDWTLQIKWAQKRDAGMY 140
Query: 66 ECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
ECQ+STQPVRS+FV LNVVVPTA ILG PDLHVD+GSTINLTC++K+SPEPPAYIFWYHH
Sbjct: 141 ECQISTQPVRSYFVRLNVVVPTATILGGPDLHVDKGSTINLTCTVKFSPEPPAYIFWYHH 200
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
+EVI+YDSSRGGVSVITEKG+VTTS+LLIQ A+L DSGKYSC+PSNADVASV VHVLNG+
Sbjct: 201 EEVINYDSSRGGVSVITEKGDVTTSFLLIQNADLADSGKYSCAPSNADVASVRVHVLNGK 260
Query: 186 YTGWSESLGTQTKYLT 201
Y L TQ Y T
Sbjct: 261 Y------LPTQPDYPT 270
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195493105|ref|XP_002094276.1| GE21735 [Drosophila yakuba] gi|194180377|gb|EDW93988.1| GE21735 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 150/203 (73%), Positives = 173/203 (85%), Gaps = 2/203 (0%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+++ L VSWIRHRDIHILTVGSYTYTSDQRF A H ++ ++WTL IKWAQKRDAG+Y
Sbjct: 96 RVRNLANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTEDWTLQIKWAQKRDAGMY 155
Query: 66 ECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
ECQ+STQPVRS+FV LNVVVPTA ILG PDLHVD+GSTINLTC++K+SPEPPAYIFWYHH
Sbjct: 156 ECQISTQPVRSYFVRLNVVVPTATILGGPDLHVDKGSTINLTCTVKFSPEPPAYIFWYHH 215
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
+EVI+YDSSRGGVSVITEKG+VTTS+LLIQ A+L DSGKYSC+PSNADVASV VHVLNGE
Sbjct: 216 EEVINYDSSRGGVSVITEKGDVTTSFLLIQNADLADSGKYSCAPSNADVASVRVHVLNGE 275
Query: 186 YTGWSE--SLGTQTKYLTFTNLF 206
+ + S G Q +LT L
Sbjct: 276 HPEAMQTGSSGCQYNWLTIVLLV 298
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195169196|ref|XP_002025411.1| GL12584 [Drosophila persimilis] gi|198465642|ref|XP_002135016.1| GA23478 [Drosophila pseudoobscura pseudoobscura] gi|194108879|gb|EDW30922.1| GL12584 [Drosophila persimilis] gi|198150253|gb|EDY73643.1| GA23478 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 145/181 (80%), Positives = 165/181 (91%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+++ L VSWIRHRDIHILTVGSYTYTSDQRF A H ++ D+WTL IKWAQKRDAG+Y
Sbjct: 96 RVRNLANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTDDWTLQIKWAQKRDAGMY 155
Query: 66 ECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
ECQ+STQPVRS+FV LNVVVPTA ILG PDLHVD+GSTINLTC++K+SPEPPAYIFWYHH
Sbjct: 156 ECQISTQPVRSYFVRLNVVVPTATILGGPDLHVDKGSTINLTCTVKFSPEPPAYIFWYHH 215
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
+EVI+YDSSRGGVSVITEKG+VTTS+LLIQ A+L DSGKYSC+PSNADVASV VHVLNG+
Sbjct: 216 EEVINYDSSRGGVSVITEKGDVTTSFLLIQNADLADSGKYSCAPSNADVASVRVHVLNGK 275
Query: 186 Y 186
Y
Sbjct: 276 Y 276
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|442631516|ref|NP_001261673.1| dpr6, isoform C [Drosophila melanogaster] gi|440215594|gb|AGB94367.1| dpr6, isoform C [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 150/203 (73%), Positives = 173/203 (85%), Gaps = 2/203 (0%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+++ L VSWIRHRDIHILTVGSYTYTSDQRF A H ++ ++WTL IKWAQKRDAG+Y
Sbjct: 96 RVRNLANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTEDWTLQIKWAQKRDAGMY 155
Query: 66 ECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
ECQ+STQPVRS+FV LNVVVPTA ILG PDLHVD+GSTINLTC++K+SPEPPAYIFWYHH
Sbjct: 156 ECQISTQPVRSYFVRLNVVVPTATILGGPDLHVDKGSTINLTCTVKFSPEPPAYIFWYHH 215
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
+EVI+YDSSRGGVSVITEKG+VTTS+LLIQ A+L DSGKYSC+PSNADVASV VHVLNGE
Sbjct: 216 EEVINYDSSRGGVSVITEKGDVTTSFLLIQNADLADSGKYSCAPSNADVASVRVHVLNGE 275
Query: 186 YTGWSE--SLGTQTKYLTFTNLF 206
+ + S G Q +LT L
Sbjct: 276 HPEAMQTGSSGCQYNWLTIVLLL 298
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242015686|ref|XP_002428479.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513102|gb|EEB15741.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 151/190 (79%), Positives = 162/190 (85%), Gaps = 11/190 (5%)
Query: 7 LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66
+K L VSWIRHRDIHILTVG YTYTSDQRF A H ++ DEWTL IK+AQKRDAGVYE
Sbjct: 20 VKNLANKTVSWIRHRDIHILTVGVYTYTSDQRFMATHHKDNDEWTLQIKFAQKRDAGVYE 79
Query: 67 CQLSTQPVRSFFVNLNVV-----------VPTAEILGSPDLHVDEGSTINLTCSIKYSPE 115
CQ+STQPVRS+FVNLNVV +PTA ILG PDLHVD GSTINLTC+IKYSP+
Sbjct: 80 CQISTQPVRSYFVNLNVVGEYRSLFAIQRLPTASILGGPDLHVDRGSTINLTCTIKYSPK 139
Query: 116 PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVA 175
PPA+IFWYHHDEVISYDSSRGGVSVITEKGE+TTSYLLIQ AEL DSGKYSCSPSNADVA
Sbjct: 140 PPAFIFWYHHDEVISYDSSRGGVSVITEKGEITTSYLLIQNAELSDSGKYSCSPSNADVA 199
Query: 176 SVYVHVLNGE 185
SV VHVLNGE
Sbjct: 200 SVRVHVLNGE 209
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24662101|ref|NP_652439.1| dpr6, isoform A [Drosophila melanogaster] gi|17862178|gb|AAL39566.1| LD13525p [Drosophila melanogaster] gi|23093767|gb|AAF50177.2| dpr6, isoform A [Drosophila melanogaster] gi|220953174|gb|ACL89130.1| dpr6-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 144/181 (79%), Positives = 165/181 (91%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+++ L VSWIRHRDIHILTVGSYTYTSDQRF A H ++ ++WTL IKWAQKRDAG+Y
Sbjct: 96 RVRNLANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTEDWTLQIKWAQKRDAGMY 155
Query: 66 ECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
ECQ+STQPVRS+FV LNVVVPTA ILG PDLHVD+GSTINLTC++K+SPEPPAYIFWYHH
Sbjct: 156 ECQISTQPVRSYFVRLNVVVPTATILGGPDLHVDKGSTINLTCTVKFSPEPPAYIFWYHH 215
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
+EVI+YDSSRGGVSVITEKG+VTTS+LLIQ A+L DSGKYSC+PSNADVASV VHVLNG+
Sbjct: 216 EEVINYDSSRGGVSVITEKGDVTTSFLLIQNADLADSGKYSCAPSNADVASVRVHVLNGK 275
Query: 186 Y 186
Y
Sbjct: 276 Y 276
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195589223|ref|XP_002084355.1| GD14231 [Drosophila simulans] gi|194196364|gb|EDX09940.1| GD14231 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 144/181 (79%), Positives = 164/181 (90%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+++ L VSWIRHRDIHILTVGSYTYTSDQRF A H ++ ++WTL IKWAQKRDAG+Y
Sbjct: 153 RVRNLANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTEDWTLQIKWAQKRDAGMY 212
Query: 66 ECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
ECQ+STQPVRS+FV LNVVVPTA ILG PDLHVD+GSTINLTC++K+SPEPPAYIFWYHH
Sbjct: 213 ECQISTQPVRSYFVRLNVVVPTATILGGPDLHVDKGSTINLTCTVKFSPEPPAYIFWYHH 272
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
+EVI+YDSSRGGVSVITEKG+VTTS+LLIQ A+L DSGKYSC+PSNADVASV VHVLNG
Sbjct: 273 EEVINYDSSRGGVSVITEKGDVTTSFLLIQNADLADSGKYSCAPSNADVASVRVHVLNGR 332
Query: 186 Y 186
Y
Sbjct: 333 Y 333
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 212 | ||||||
| FB|FBgn0040823 | 283 | dpr6 "dpr6" [Drosophila melano | 0.853 | 0.639 | 0.795 | 2.6e-79 | |
| FB|FBgn0052057 | 408 | dpr10 "dpr10" [Drosophila mela | 0.485 | 0.252 | 0.631 | 2.6e-61 | |
| FB|FBgn0038282 | 602 | dpr9 "dpr9" [Drosophila melano | 0.806 | 0.284 | 0.621 | 7.3e-59 | |
| FB|FBgn0052600 | 344 | dpr8 "dpr8" [Drosophila melano | 0.853 | 0.526 | 0.552 | 4.6e-57 | |
| FB|FBgn0053512 | 323 | dpr4 "dpr4" [Drosophila melano | 0.863 | 0.566 | 0.543 | 1.2e-47 | |
| FB|FBgn0085414 | 326 | dpr12 "dpr12" [Drosophila mela | 0.811 | 0.527 | 0.508 | 6.4e-44 | |
| FB|FBgn0034286 | 419 | dpr13 "dpr13" [Drosophila mela | 0.797 | 0.403 | 0.485 | 4.2e-40 | |
| FB|FBgn0037908 | 336 | dpr5 "dpr5" [Drosophila melano | 0.905 | 0.571 | 0.448 | 2.9e-39 | |
| FB|FBgn0053202 | 360 | dpr11 "dpr11" [Drosophila mela | 0.839 | 0.494 | 0.459 | 6.3e-37 | |
| FB|FBgn0040726 | 367 | dpr "defective proboscis exten | 0.863 | 0.498 | 0.468 | 4.4e-36 |
| FB|FBgn0040823 dpr6 "dpr6" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 144/181 (79%), Positives = 165/181 (91%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+++ L VSWIRHRDIHILTVGSYTYTSDQRF A H ++ ++WTL IKWAQKRDAG+Y
Sbjct: 96 RVRNLANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTEDWTLQIKWAQKRDAGMY 155
Query: 66 ECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
ECQ+STQPVRS+FV LNVVVPTA ILG PDLHVD+GSTINLTC++K+SPEPPAYIFWYHH
Sbjct: 156 ECQISTQPVRSYFVRLNVVVPTATILGGPDLHVDKGSTINLTCTVKFSPEPPAYIFWYHH 215
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
+EVI+YDSSRGGVSVITEKG+VTTS+LLIQ A+L DSGKYSC+PSNADVASV VHVLNG+
Sbjct: 216 EEVINYDSSRGGVSVITEKGDVTTSFLLIQNADLADSGKYSCAPSNADVASVRVHVLNGK 275
Query: 186 Y 186
Y
Sbjct: 276 Y 276
|
|
| FB|FBgn0052057 dpr10 "dpr10" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 65/103 (63%), Positives = 78/103 (75%)
Query: 83 VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT 142
V VPTA ILG PDL+VD+GSTINLTC IK+SPEPP +IFWYH D+V+S ++S G + T
Sbjct: 199 VAVPTATILGGPDLYVDKGSTINLTCIIKFSPEPPTHIFWYHQDKVLSEETSGGRLKFKT 258
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
K E T S LLI A+L SGKYSC PSN ++AS+ VHVL GE
Sbjct: 259 IKSEETKSILLIYDADLLHSGKYSCYPSNTEIASIRVHVLQGE 301
|
|
| FB|FBgn0038282 dpr9 "dpr9" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 110/177 (62%), Positives = 139/177 (78%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
+VSW+RHRDIH+LTVG YTYTSDQRF AIH+ + ++W L IK+ Q RD+G+YECQ+ST P
Sbjct: 291 QVSWVRHRDIHLLTVGRYTYTSDQRFRAIHQPQTEDWMLQIKYPQHRDSGIYECQVSTTP 350
Query: 74 VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH------HDE 127
S +++LNVV P+ EI+G+PDL+++ GSTINLTC I+ SPEPPAYIFW H H +
Sbjct: 351 HMSHYIHLNVVEPSTEIIGAPDLYIESGSTINLTCIIQNSPEPPAYIFWNHNNAFPSHPQ 410
Query: 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNG 184
+I+YDS RGGVSV+T KG+ TTS+LLI+ A DSG Y C+PSNA SV VHVLNG
Sbjct: 411 IINYDSPRGGVSVVTNKGDTTTSFLLIKSARPSDSGHYQCNPSNAKPKSVTVHVLNG 467
|
|
| FB|FBgn0052600 dpr8 "dpr8" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 100/181 (55%), Positives = 142/181 (78%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
++K L VSW+RHRDIH+LTVG YTYTSDQRF A+H ++WTL I++AQ++D+G+Y
Sbjct: 65 RVKNLGNRTVSWVRHRDIHLLTVGRYTYTSDQRFEAMHSPHAEDWTLRIRYAQRKDSGIY 124
Query: 66 ECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
ECQ+ST P V LN+V P +I+G P+LH++ GSTINLTC +K++PEPP + W H+
Sbjct: 125 ECQISTTPPIGHSVYLNIVEPVTDIIGGPELHINRGSTINLTCIVKFAPEPPPTVIWSHN 184
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
E+I++DS RGG+S++TEKG +TTS LL+Q+A +DSG Y+C+PSNA+ SV VH+++GE
Sbjct: 185 REIINFDSPRGGISLVTEKGVLTTSRLLVQKAITQDSGLYTCTPSNANPTSVRVHIVDGE 244
Query: 186 Y 186
+
Sbjct: 245 H 245
|
|
| FB|FBgn0053512 dpr4 "dpr4" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 101/186 (54%), Positives = 129/186 (69%)
Query: 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKR 60
+LH R ++ L VSWIR RD+HILTVG TYT+DQRF ++H DEWTL I Q R
Sbjct: 64 LLHCR-VRNLGDRAVSWIRKRDLHILTVGILTYTNDQRFQSLHSEGSDEWTLRISSPQPR 122
Query: 61 DAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYI 120
D+G YECQ+ST+P S LNVVV A+ILG+ +L + GS INLTC SP PP++I
Sbjct: 123 DSGTYECQVSTEPKISQGFRLNVVVSRAKILGNAELFIKSGSDINLTCLAMQSPVPPSFI 182
Query: 121 FWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVH 180
+WY V++Y S RGG++VITE+ TS LLI +A DSG Y+CSPS++D ASV VH
Sbjct: 183 YWYKGKRVMNY-SQRGGINVITERS-TRTSKLLIAKATPADSGNYTCSPSSSDSASVVVH 240
Query: 181 VLNGEY 186
V+NGE+
Sbjct: 241 VINGEH 246
|
|
| FB|FBgn0085414 dpr12 "dpr12" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 88/173 (50%), Positives = 121/173 (69%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
++SWIR RD HIL+ G+ YT+D+RF+ +H + WTL IK+ Q+RD G+YECQ+ST
Sbjct: 113 QISWIRRRDWHILSSGAQLYTNDERFAILHTPGSNMWTLQIKFVQRRDHGMYECQVSTPT 172
Query: 74 -VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYD 132
+ S FVNL VVVP A ILGS +LHVD GSTINL C I+ SP PP Y++W +D +I+Y
Sbjct: 173 GIISHFVNLQVVVPEAFILGSGELHVDMGSTINLVCIIEKSPTPPQYVYWQKNDRLINYV 232
Query: 133 SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
SR +++ T G T S L+I++ ++ DSG Y+CS SN + AS+YV V G+
Sbjct: 233 DSRRDITIETTPGPRTQSRLIIREPQVTDSGNYTCSASNTEPASIYVFVSKGD 285
|
|
| FB|FBgn0034286 dpr13 "dpr13" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 83/171 (48%), Positives = 113/171 (66%)
Query: 15 VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV 74
VSWIR +D H+LTVG TY+SD+RFSA H + ++WTL IK+ Q RDAGVYECQ+ST P
Sbjct: 207 VSWIRKKDYHLLTVGLTTYSSDERFSATHLKHSEDWTLQIKFVQLRDAGVYECQVSTHPP 266
Query: 75 RSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS 134
S F++L+VV AEI G P ++ GST+ L C + + E YIFWYH + +I+YD
Sbjct: 267 TSIFLHLSVVEARAEITGPPIRYLTPGSTLRLQCRVVQNTEASEYIFWYHDNRMINYDID 326
Query: 135 RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGE 185
RG ++V TE + +S L IQ+ + SG ++C SN ASV VH+ G+
Sbjct: 327 RG-INVSTEP-DFQSSELTIQRTRREHSGNFTCVASNTQPASVLVHIFKGD 375
|
|
| FB|FBgn0037908 dpr5 "dpr5" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 88/196 (44%), Positives = 124/196 (63%)
Query: 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRD 61
LH R ++ L VSWIR RD+HILT+G TYT+DQRF A H DEW L I Q+RD
Sbjct: 110 LHCR-VRHLGDRAVSWIRQRDLHILTIGIMTYTNDQRFLARHIDNSDEWVLKIVSVQQRD 168
Query: 62 AGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIF 121
AGVYECQ+ST+P S L VV A+IL + +L + GS INLTC +P P ++
Sbjct: 169 AGVYECQVSTEPKISLAYKLVVVTSKAQILANRELFIQSGSDINLTCIAPQAPGPYTHML 228
Query: 122 WYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181
W+ E++S DS+RGG+ V +E+ ++ TS L+I + + DSG Y+CS N++ SV+VH+
Sbjct: 229 WHKDTELVS-DSARGGIRVESEQ-QMKTSNLVISRVQHTDSGNYTCSADNSNSDSVFVHI 286
Query: 182 LNGE-YTGWSESLGTQ 196
+ E + LG++
Sbjct: 287 IKSEQHAAMQHELGSR 302
|
|
| FB|FBgn0053202 dpr11 "dpr11" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 86/187 (45%), Positives = 120/187 (64%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDE-WTLHIKWAQKRDAGV 64
++K L VSWIR RD HILTV + +DQRF AI ++ D+ WTL IK+ Q RDAG
Sbjct: 140 RVKQLGNKSVSWIRLRDGHILTVDRAVFIADQRFLAI--KQPDKYWTLQIKYVQARDAGS 197
Query: 65 YECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH 124
YECQ+ST+P S V L VVVP EILG PD +V GS + L C ++ + EPP +I WYH
Sbjct: 198 YECQVSTEPKVSARVQLQVVVPRTEILGEPDRYVKAGSNVVLRCIVRGALEPPTFIMWYH 257
Query: 125 HDEVISYDSSRGGVSV---ITE---KGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVY 178
E ++ DS R + + E +G+ T L+I+ A+ +D+G Y+CSPSN+ A+V
Sbjct: 258 GAEQLAADSRRHRTQLDPNLPEASGEGQSTIGSLIIESAKKRDTGNYTCSPSNSPSATVT 317
Query: 179 VHVLNGE 185
++++NGE
Sbjct: 318 LNIINGE 324
|
|
| FB|FBgn0040726 dpr "defective proboscis extension response" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/192 (46%), Positives = 113/192 (58%)
Query: 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGD-EWTLHIKWAQKR 60
LH R ++ L VSWIR RD+HILT G TYTSDQRF + R +G WTL IK+ Q R
Sbjct: 73 LHCR-VERLGDKDVSWIRKRDLHILTAGGTTYTSDQRFQVL-RPDGSANWTLQIKYPQPR 130
Query: 61 DAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYI 120
D+GVYECQ++T+P S NVV AEI G DL V GS INLTC I P I
Sbjct: 131 DSGVYECQINTEPKMSLSYTFNVVELKAEIFGPSDLMVKTGSDINLTCKIMQGPHELGNI 190
Query: 121 FWYHHDEVIS------YDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174
FWY E++ DSS + V + + TS L I++A D+G Y+C P+ A
Sbjct: 191 FWYKGSEMLDGKGENEIDSSMARIRVEDDWTDGLTSRLKIKRAMPGDTGNYTCVPTVAKT 250
Query: 175 ASVYVHVLNGEY 186
+SVYVHV+ GE+
Sbjct: 251 SSVYVHVIIGEH 262
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 212 | |||
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 3e-10 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 3e-10 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 5e-08 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 5e-08 | |
| pfam13895 | 80 | pfam13895, Ig_2, Immunoglobulin domain | 7e-08 | |
| cd04983 | 109 | cd04983, IgV_TCR_alpha_like, Immunoglobulin (Ig) v | 3e-06 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 4e-06 | |
| cd00099 | 105 | cd00099, IgV, Immunoglobulin variable domain (IgV) | 2e-05 | |
| pfam13927 | 74 | pfam13927, Ig_3, Immunoglobulin domain | 8e-05 | |
| cd05891 | 92 | cd05891, Ig_M-protein_C, C-terminal immunoglobulin | 4e-04 | |
| cd05744 | 75 | cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l | 6e-04 | |
| cd05737 | 92 | cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob | 9e-04 | |
| cd00099 | 105 | cd00099, IgV, Immunoglobulin variable domain (IgV) | 0.001 | |
| pfam00047 | 62 | pfam00047, ig, Immunoglobulin domain | 0.002 | |
| cd05892 | 75 | cd05892, Ig_Myotilin_C, C-terminal immunoglobulin | 0.002 | |
| pfam07686 | 114 | pfam07686, V-set, Immunoglobulin V-set domain | 0.003 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 0.004 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 0.004 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-10
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
P + V EG ++ L+C + S PP + WY + +S R + +TS L
Sbjct: 1 PPSVTVKEGESVTLSC--EASGSPPPEVTWYKQGGKLLAESGR-----FSVSRSGSTSTL 53
Query: 153 LIQQAELKDSGKYSCSPSNADV---ASVYVHV 181
I +DSG Y+C+ +N+ + + V
Sbjct: 54 TISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-10
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
P + V EG ++ L+C + S PP + WY + +S R + +TS L
Sbjct: 1 PPSVTVKEGESVTLSC--EASGSPPPEVTWYKQGGKLLAESGR-----FSVSRSGSTSTL 53
Query: 153 LIQQAELKDSGKYSCSPSNADV---ASVYVHV 181
I +DSG Y+C+ +N+ + + V
Sbjct: 54 TISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-08
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159
EG ++ LTC + +P P I W + + + + S L I+ L
Sbjct: 1 EGQSVTLTCPAEGNPVPN--ITWLKDGKPLPESNRF----------VASGSTLTIKSVSL 48
Query: 160 KDSGKYSCSPSNA 172
+DSG Y+C N+
Sbjct: 49 EDSGLYTCVAENS 61
|
Length = 63 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-08
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D+ V EG + TC++ P+P + W+ + + S R +T +G T L I
Sbjct: 9 DVEVQEGESARFTCTVTGDPDPT--VSWFKDGQPLR-SSDRF---KVTYEGGTYT--LTI 60
Query: 155 QQAELKDSGKYSCSPSN 171
+ D GKY+C +N
Sbjct: 61 SNVQPDDEGKYTCVATN 77
|
Length = 90 |
| >gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 7e-08
Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 22/96 (22%)
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
+L V EG + LTCS PP WY +S +
Sbjct: 3 VLTPSPTVVFEGEDVTLTCSA--PGNPPPNYTWYKDGVPLSS----------------SQ 44
Query: 150 SYLLIQQAELKDSGKYSCSPSNADV----ASVYVHV 181
+ +DSG Y+C SN V + V
Sbjct: 45 NGFFTPNVSAEDSGTYTCVASNGGGGKTSNPVTLTV 80
|
This domain contains immunoglobulin-like domains. Length = 80 |
| >gnl|CDD|143184 cd04983, IgV_TCR_alpha_like, Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-06
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSR-----GGVSVI 141
L V EG + L C+ YS Y+FWY +I S+ G S
Sbjct: 5 PQSLSVQEGENVTLNCN--YSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSAT 62
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSC 167
+K +S L I A+L DS Y C
Sbjct: 63 LDKSR-KSSSLHISAAQLSDSAVYFC 87
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. Length = 109 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 4e-06
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSG 163
+ LTC P P I W + + + SS + +S L I L+DSG
Sbjct: 1 VTLTCLASGPPPP--TITWLKNGKPLP--SSVLTRVRSSRGTSSGSSTLTISNVTLEDSG 56
Query: 164 KYSC 167
Y+C
Sbjct: 57 TYTC 60
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143167 cd00099, IgV, Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-05
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHHD------EVISYDSSRGGVSV-------ITEKGE 146
EG ++ L+C+ S YIFWY +I S+ + T
Sbjct: 5 EGESVTLSCTYSGSFSSY-YIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSS 63
Query: 147 VTTSYLLIQQAELKDSGKYSC 167
++ L I + +DS Y C
Sbjct: 64 KSSFTLTISSLQPEDSAVYYC 84
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 105 |
| >gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 8e-05
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
I SP V G + LTCS + P PP WY + + G
Sbjct: 3 VITVSPSPSVTSGGGVTLTCSAEGGPPPPTI-SWYRNGSISGGSGGLGSSG--------- 52
Query: 149 TSYLLIQQAELKDSGKYSCSPSN 171
S L + +DSG Y+C SN
Sbjct: 53 -STLTLSSVTSEDSGTYTCVASN 74
|
This family contains immunoglobulin-like domains. Length = 74 |
| >gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 4e-04
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 90 ILGSPDL-HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
I G PD+ + EG T+NLTC++ +P+P + W+ +D+ I SV E+G+
Sbjct: 4 IGGLPDVVTIMEGKTLNLTCTVFGNPDPE--VIWFKNDQDIELSEH---YSVKLEQGKYA 58
Query: 149 TSYLLIQQAELKDSGKYSCSPSN 171
+ L I+ +DSGKYS + N
Sbjct: 59 S--LTIKGVTSEDSGKYSINVKN 79
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92 |
| >gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 6e-04
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK-GEVTTSYLLIQQAELKDS 162
+ L C + S PP IFW ++E+++Y++ R +S+ + G + LLIQ A +D+
Sbjct: 1 VRLECRV--SAIPPPQIFWKKNNEMLTYNTDR--ISLYQDNCGRIC---LLIQNANKEDA 53
Query: 163 GKYSCSPSN-ADVAS 176
G Y+ S N A V S
Sbjct: 54 GWYTVSAVNEAGVVS 68
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75 |
| >gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 9e-04
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 92 GSPDL-HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTS 150
G PD+ + EG T+NLTC++ P+P + W +D+ ++ S V V E+G+ +
Sbjct: 6 GLPDVVTIMEGKTLNLTCTVFGDPDPE--VSWLKNDQALAL-SDHYNVKV--EQGK--YA 58
Query: 151 YLLIQQAELKDSGKYSCSPSN 171
L I+ +DSGKY N
Sbjct: 59 SLTIKGVSSEDSGKYGIVVKN 79
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92 |
| >gnl|CDD|143167 cd00099, IgV, Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.001
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 13 TRVSWIRHRD-------IHILTVGSYTYTSDQ-RFSAIHRREGDEWTLHIKWAQKRDAGV 64
+ W R + I+I + GS + RFS +TL I Q D+ V
Sbjct: 22 YYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81
Query: 65 YECQLSTQP 73
Y C +S
Sbjct: 82 YYCAVSLSG 90
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 105 |
| >gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 35.2 bits (81), Expect = 0.002
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160
GS++ LTCS S P + W+ +V T++ V++ L I +
Sbjct: 1 GSSVTLTCS--VSGPPQVDVTWFKEG-----KGLEESTTVGTDENRVSSITLTISNVTPE 53
Query: 161 DSGKYSCS 168
DSG Y+C
Sbjct: 54 DSGTYTCV 61
|
Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62 |
| >gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Score = 35.7 bits (82), Expect = 0.002
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK-GEVTTSYLLIQQAELKDS 162
+ L C I S PP IFW ++E++ Y++ R +S+ + G VT LLI+ KD+
Sbjct: 1 VKLECQI--SAIPPPKIFWKRNNEMVQYNTDR--ISLYQDNSGRVT---LLIKNVNKKDA 53
Query: 163 GKYSCSPSN-ADVAS 176
G Y+ S N A VA+
Sbjct: 54 GWYTVSAVNEAGVAT 68
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75 |
| >gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain | Back alignment and domain information |
|---|
Score = 36.0 bits (83), Expect = 0.003
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPA-YIFWYHH------DEVISYDSSRGGVSVITE-K 144
+ V EG ++ L CS +S + ++WY + +I Y +S V K
Sbjct: 8 PRPVTVAEGGSVTLPCS--FSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFK 65
Query: 145 GEVTTS--------YLLIQQAELKDSGKYSCSPSNAD 173
G VT S L I L DSG Y+C+ SN +
Sbjct: 66 GRVTLSGNGSKNDFSLTISNLRLSDSGTYTCAVSNPN 102
|
This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 34.8 bits (80), Expect = 0.004
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+ G P V+W + + RFS R G TL I D+G Y
Sbjct: 17 EASGSPPPEVTWYKQGGKLLA--------ESGRFSV--SRSGSTSTLTISNVTPEDSGTY 66
Query: 66 ECQLS-TQPVRSFFVNLNV 83
C + + S L V
Sbjct: 67 TCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 34.8 bits (80), Expect = 0.004
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+ G P V+W + + RFS R G TL I D+G Y
Sbjct: 17 EASGSPPPEVTWYKQGGKLLA--------ESGRFSV--SRSGSTSTLTISNVTPEDSGTY 66
Query: 66 ECQLS-TQPVRSFFVNLNV 83
C + + S L V
Sbjct: 67 TCAATNSSGSASSGTTLTV 85
|
Length = 85 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 212 | |||
| KOG3513|consensus | 1051 | 99.9 | ||
| KOG3513|consensus | 1051 | 99.88 | ||
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.83 | |
| KOG4194|consensus | 873 | 99.82 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.82 | |
| KOG4194|consensus | 873 | 99.8 | ||
| KOG4221|consensus | 1381 | 99.79 | ||
| KOG4221|consensus | 1381 | 99.76 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.72 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.68 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.64 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.6 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.59 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.57 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.56 | |
| KOG4222|consensus | 1281 | 99.56 | ||
| KOG4222|consensus | 1281 | 99.56 | ||
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.54 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.53 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.52 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.52 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.51 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.51 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.5 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.5 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.5 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.48 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.48 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.48 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.47 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.47 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.47 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.47 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.46 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.46 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.46 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.46 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.46 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.46 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.45 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.45 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.45 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.44 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.44 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.44 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.44 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.43 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.43 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.43 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.42 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.41 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.41 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.41 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.41 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.41 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.41 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.41 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.4 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.4 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.4 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.4 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.4 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.4 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.4 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.39 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.39 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.39 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.39 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.39 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.39 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.39 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.38 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.38 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.38 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.38 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.38 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.38 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.38 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.38 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.37 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.37 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.37 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.37 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.37 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.37 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.36 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.36 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.36 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.36 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.35 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.35 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.35 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.35 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.35 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.35 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 99.35 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.34 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.34 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 99.34 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.33 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.33 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.33 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.32 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.32 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.32 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.31 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.31 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.31 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.31 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.31 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.31 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.31 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.31 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.31 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.3 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.3 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.3 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.3 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.3 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.29 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.29 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.29 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.29 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.29 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.29 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.29 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.28 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.28 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.28 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.28 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.27 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.27 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.26 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.25 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.25 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.25 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.25 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.25 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.25 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.24 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.24 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.24 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.23 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.23 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.23 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.23 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.22 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.22 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.22 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.22 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 99.22 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.21 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.21 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.21 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.2 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.2 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.18 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.18 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.18 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.17 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.17 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.17 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.16 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.15 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.15 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.15 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.13 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.13 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.13 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.13 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.12 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.11 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.11 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 99.1 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.09 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 99.09 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.09 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.08 | |
| PHA03376 | 221 | BARF1; Provisional | 99.08 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.07 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.06 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 99.04 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.02 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.02 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.02 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.02 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 99.02 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 99.01 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 99.01 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.01 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 99.0 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 99.0 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 98.99 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.98 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 98.98 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.97 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.96 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 98.96 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 98.96 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 98.95 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.95 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.94 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.94 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.94 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.93 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.93 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.93 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.92 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.92 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 98.92 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.91 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.9 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 98.9 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.9 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.89 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.89 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.89 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 98.89 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.89 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.89 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.88 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 98.87 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.87 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.85 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 98.84 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.83 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 98.82 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.81 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.81 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.81 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.8 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.79 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.79 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.79 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.78 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.78 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.78 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.78 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.77 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 98.77 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.76 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.76 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.75 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 98.74 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.74 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.72 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.72 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.72 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.7 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.69 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.69 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.69 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.69 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.66 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.65 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 98.63 | |
| KOG3515|consensus | 741 | 98.62 | ||
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.62 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.62 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.6 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 98.59 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.59 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.57 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 98.57 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.56 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.55 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 98.54 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.53 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 98.52 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.52 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.52 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 98.52 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.49 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.49 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.49 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.48 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.48 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.46 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 98.46 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.44 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 98.43 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 98.43 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.43 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.42 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 98.41 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.41 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.41 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.4 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.38 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.37 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.37 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.37 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 98.35 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 98.34 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.33 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 98.32 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.32 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.3 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.3 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 98.29 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 98.29 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 98.27 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.26 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 98.26 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.25 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.25 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.25 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.25 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 98.23 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 98.23 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.22 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 98.21 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 98.2 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 98.2 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 98.19 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 98.18 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.17 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 98.16 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 98.16 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 98.14 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 98.14 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.13 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.11 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.09 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.09 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 98.07 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.05 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 98.05 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 98.04 | |
| PHA03376 | 221 | BARF1; Provisional | 98.04 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 98.03 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.92 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.91 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 97.88 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.84 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 97.82 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 97.78 | |
| KOG3515|consensus | 741 | 97.67 | ||
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 97.63 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 97.61 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 97.59 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 97.58 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.53 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 97.5 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 97.48 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 97.45 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 97.44 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 97.4 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 97.38 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 97.38 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 97.37 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 97.33 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.28 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 97.23 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 97.17 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 97.14 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 97.08 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 97.07 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 97.01 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 96.99 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 96.97 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 96.91 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 96.85 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 96.83 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 96.78 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 96.77 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 96.71 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 96.69 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 96.67 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 96.65 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 96.63 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 96.45 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 96.34 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 96.28 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 95.93 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 95.65 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 95.12 | |
| KOG1480|consensus | 909 | 94.93 | ||
| PHA03042 | 286 | CD47-like protein; Provisional | 94.91 | |
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 94.81 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 94.76 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 94.54 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 94.43 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 93.84 | |
| PHA03052 | 69 | Hypothetical protein; Provisional | 93.71 | |
| PF02124 | 211 | Marek_A: Marek's disease glycoprotein A; InterPro: | 92.94 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 91.61 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 91.29 | |
| KOG4597|consensus | 560 | 90.29 | ||
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 90.24 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 89.74 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 88.34 | |
| PF02480 | 439 | Herpes_gE: Alphaherpesvirus glycoprotein E; InterP | 87.82 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 87.5 | |
| KOG4597|consensus | 560 | 86.65 | ||
| PHA03189 | 348 | UL14 tegument protein; Provisional | 85.09 | |
| KOG1480|consensus | 909 | 84.68 | ||
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 83.83 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 83.76 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 83.16 |
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=162.49 Aligned_cols=161 Identities=22% Similarity=0.311 Sum_probs=127.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
|.|.|.+.|.|.|+|.|.|.++. ..+ .|.... .....|.|.+++.+|+|.|.|.+.|. +...+.+
T Consensus 259 v~LECfA~G~P~P~i~W~k~~g~-~~~---------~r~~~~----~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~ 324 (1051)
T KOG3513|consen 259 VKLECFALGNPTPQIKWRKVDGK-PPP---------RRATYS----NYGKVLKIPNVQYEDAGEYECIAENSRGSATHSG 324 (1051)
T ss_pred EEEEEEecCCCCCcEEEEeCCCC-CCC---------cceeee----ccccEEEecccCcCCCeEEEEEEecccccceeeE
Confidence 57999999999999999998863 111 122222 13448999999999999999999996 6777888
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+|..+..+.+..+..|+++.+.|.+.+.|.|. +.|.+++.++....... +. .-..+ .|.|++++.
T Consensus 325 ~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~--v~WlkNg~pl~~~~r~~-~~-~i~~g-----~L~is~v~~ 395 (1051)
T KOG3513|consen 325 HVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPT--VKWLKNGEPLEPAERDP-RY-KIDDG-----TLIISNVQE 395 (1051)
T ss_pred EEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCc--eEEeeCCeecCccCCCc-ce-EEeCC-----EEEEEeccc
Confidence 89999999888889999999999999999999998888 99999999986332211 12 22333 399999999
Q ss_pred cCCEEEEEEcccC---CeeEEEEEEeec
Q psy13371 160 KDSGKYSCSPSNA---DVASVYVHVLNG 184 (212)
Q Consensus 160 ~d~g~y~C~~~n~---~~~~~~~~v~~~ 184 (212)
.|+|.|.|.|+|. ...++.+.|+..
T Consensus 396 ~dsg~YQC~A~Nk~G~i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 396 SDSGVYQCIAENKYGTIYANAELKVLAS 423 (1051)
T ss_pred ccCeEEEeeeecccceEeeeeEEEEEcc
Confidence 9999999999998 345566766654
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=156.16 Aligned_cols=164 Identities=24% Similarity=0.374 Sum_probs=124.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.+.|++.|.|.|.++|++++. .+.+.. .++|+.+. .+.|+|.+++.+|+|.|.|.+.|. +.....+
T Consensus 349 v~~eC~a~g~P~p~v~WlkNg~-pl~~~~-----r~~~~~i~------~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA 416 (1051)
T KOG3513|consen 349 VTLECKASGKPNPTVKWLKNGE-PLEPAE-----RDPRYKID------DGTLIISNVQESDSGVYQCIAENKYGTIYANA 416 (1051)
T ss_pred eEEEEEecCCCCCceEEeeCCe-ecCccC-----CCcceEEe------CCEEEEEecccccCeEEEeeeecccceEeeee
Confidence 4689999999999999999873 332211 13456664 348999999999999999999997 5667788
Q ss_pred EEEEecc-cceeeCCCce--eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEee
Q psy13371 80 NLNVVVP-TAEILGSPDL--HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 80 ~l~v~~~-~~~~~~~~~~--~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.|+|... |.....+... .+..|..+.+.|...+.|.|. +.|.+.++.+ ..+++..+.++|. |.|.+
T Consensus 417 ~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~--~~W~k~~~~~----~~~~r~~i~edGt-----L~I~n 485 (1051)
T KOG3513|consen 417 ELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPK--VSWLKGGEKL----LQSGRIRILEDGT-----LEISN 485 (1051)
T ss_pred EEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcce--EEEEcCCccc----ccCceEEECCCCc-----EEecc
Confidence 9999876 4444444433 577899999999999888887 9999988843 2445667777776 99999
Q ss_pred eeecCCEEEEEEcccC-CeeEEEEEEeecccC
Q psy13371 157 AELKDSGKYSCSPSNA-DVASVYVHVLNGEYT 187 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~-~~~~~~~~v~~~~~~ 187 (212)
++.+|+|.|+|.|.|. ........+.....+
T Consensus 486 ~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~t 517 (1051)
T KOG3513|consen 486 VTRSDAGKYTCVAENKLGKAESTGNLIVKDAT 517 (1051)
T ss_pred cCcccCcEEEEEEEcccCccceEEEEEEecCc
Confidence 9999999999999998 333333333333333
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-19 Score=124.50 Aligned_cols=152 Identities=20% Similarity=0.288 Sum_probs=99.2
Q ss_pred CeeEeeeCCCC-----------CceEEEEeeCcceeeeecceeeecCCc---eEEEee-CCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGLL-----------PTRVSWIRHRDIHILTVGSYTYTSDQR---FSAIHR-REGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~p-----------~~~v~W~~~~~~~~~~~~~~~~~~~~r---~~~~~~-~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.+.+.| .+.|.|+|.+....... .+.| ..+..+ ....+.+|.|.+++.+|+|.|
T Consensus 40 v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~------~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y 113 (227)
T PHA02826 40 MVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRD------SGARTKIKKITHNEIGDRSENLWIGNVINIDEGIY 113 (227)
T ss_pred EEEEccccccccccccccccCCCccEEEEeCCeEEEEEc------CCCccccccccccceecCCCeEEECCCChHHCEEE
Confidence 47899998744 46999999863111110 1111 000000 112345899999999999999
Q ss_pred EEEecCC-CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCC---CCCceEEEEEcCeEEEeeCCCCceeEE
Q psy13371 66 ECQLSTQ-PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSP---EPPAYIFWYHHDEVISYDSSRGGVSVI 141 (212)
Q Consensus 66 ~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~p~~~v~W~~~~~~~~~~~~~~~~~~~ 141 (212)
+|.+.+. +.....+.|.|..+ +....+.+|+.+.|.|.+.+.+ .|.+.+.|+++++++... .+...
T Consensus 114 ~C~a~N~~~~~~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~----~r~~~ 183 (227)
T PHA02826 114 ICTISSGNICEESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT----DRIQL 183 (227)
T ss_pred EEEEEECCcceEEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC----CCEEE
Confidence 9999985 34455566666432 1234567899999999986432 133459999999987421 12222
Q ss_pred eecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 142 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+ ..|.|.+++.+|+|.|+|.+...
T Consensus 184 ~~~~----~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 184 RNNN----STLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred eCCC----CEEEECcCCHHhCEEEEEEEEEe
Confidence 2222 24999999999999999999864
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=138.41 Aligned_cols=174 Identities=21% Similarity=0.340 Sum_probs=127.5
Q ss_pred eeEeeeCCC--CCceEEEEeeCcceeeee----cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--C
Q psy13371 2 LHQRKLKGL--LPTRVSWIRHRDIHILTV----GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--P 73 (212)
Q Consensus 2 ~l~C~~~~~--p~~~v~W~~~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~ 73 (212)
.++|.+.+. ....+.|.+++. +++. +...+....|...+.+...-...|++.+++..|+|.|.|.+.|. .
T Consensus 522 rftC~a~sssasplsi~WR~dne--vq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGS 599 (873)
T KOG4194|consen 522 RFTCNAYSSSASPLSIEWRKDNE--VQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGS 599 (873)
T ss_pred EEEEEeccCCCCCceeEeeeccc--cCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCc
Confidence 589999884 567999999873 2221 11122222333333222223456999999999999999999995 3
Q ss_pred ceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeE-EEeeCCCCceeEEeecCceEEEEE
Q psy13371 74 VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV-ISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 74 ~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
..+..+.++|...|.+..+|.+.++..|+.+.|.|.+.|.|.|. +.|-++|.. ++.. .....++..++.. +
T Consensus 600 tysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~Pe--IawqkdggtdFPAA-~eRRl~Vmpedd~-----f 671 (873)
T KOG4194|consen 600 TYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPE--IAWQKDGGTDFPAA-RERRLHVMPEDDV-----F 671 (873)
T ss_pred chhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcc--eeehhcCCCCCchh-hhheeeecCCCCE-----E
Confidence 56778889999999999999999999999999999999999888 999988765 4222 2223334444443 8
Q ss_pred EEeeeeecCCEEEEEEcccC---CeeEEEEEEeecc
Q psy13371 153 LIQQAELKDSGKYSCSPSNA---DVASVYVHVLNGE 185 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~---~~~~~~~~v~~~~ 185 (212)
.|.++..+|.|.|+|+|+|. ......+.|++.+
T Consensus 672 ~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p 707 (873)
T KOG4194|consen 672 FITNVKIEDQGIYTCTAQNVAGQISANATLTVLETP 707 (873)
T ss_pred EEecccccccceeEEeeeccccceeeceEEEEecCC
Confidence 89999999999999999997 3455677776653
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-18 Score=126.74 Aligned_cols=160 Identities=21% Similarity=0.322 Sum_probs=105.9
Q ss_pred eeEee-----eCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cce
Q psy13371 2 LHQRK-----LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVR 75 (212)
Q Consensus 2 ~l~C~-----~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 75 (212)
.|.|. ..+.|.+.|.|++.+ .+ .+.|+... .+..|.|.+++.+|+|.|+|.+.+. +..
T Consensus 140 ~i~C~~~~~~~~~~~~~~i~W~k~~--~~---------~~~r~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~ 203 (326)
T PHA02785 140 EMVCPNINAFIASNVNADIIWSGHR--RL---------RNKRLKQR-----TPGIITIEDVRKNDAGYYTCVLKYIYGDK 203 (326)
T ss_pred EEECCChhhcccCCCCceEEEccCC--cc---------CCcceEec-----CCCeEEEeecChhhCeEEEEEEEeccCCE
Confidence 47786 346688999998743 21 12344433 2347999999999999999999984 222
Q ss_pred ----eEEEEEEEec--ccceeeCCCceeeeCCCcEEEEeEEeeCCCC-CceEEEEEcCeEEEeeCCC-CceeEEee----
Q psy13371 76 ----SFFVNLNVVV--PTAEILGSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWYHHDEVISYDSSR-GGVSVITE---- 143 (212)
Q Consensus 76 ----~~~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~~~~~~~~~~~-~~~~~~~~---- 143 (212)
...+.|.|.. .++.+..|....+..|+.++|.|.+.+.|.+ .+.+.|.++|..+...... ..+.....
T Consensus 204 ~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~ 283 (326)
T PHA02785 204 TYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYT 283 (326)
T ss_pred EEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccc
Confidence 2234455543 2333455667778889999999999988754 2359999999877432111 11211111
Q ss_pred --cCceEEEEEEEeeeeecCCEEEEEEcccCCeeEE
Q psy13371 144 --KGEVTTSYLLIQQAELKDSGKYSCSPSNADVASV 177 (212)
Q Consensus 144 --~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~ 177 (212)
........|.|.+++.+|.|.|+|.|.|..+...
T Consensus 284 ~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 284 TDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred cccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 1111235699999999999999999999854333
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-19 Score=134.63 Aligned_cols=151 Identities=19% Similarity=0.359 Sum_probs=115.5
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.++|.|.|+|.|.|.++. -.+... ..|..+.+ ++-.+.|.|++.+|+|.|+|.+.+. +..+..++
T Consensus 631 rl~CaAtG~P~PeIawqkdggt-dFPAA~-----eRRl~Vmp----edd~f~Itnvk~eD~GiYtC~A~n~AG~isanAt 700 (873)
T KOG4194|consen 631 RLECAATGHPRPEIAWQKDGGT-DFPAAR-----ERRLHVMP----EDDVFFITNVKIEDQGIYTCTAQNVAGQISANAT 700 (873)
T ss_pred eeeeeccCCCCcceeehhcCCC-CCchhh-----hheeeecC----CCCEEEEecccccccceeEEeeeccccceeeceE
Confidence 5899999999999999998852 233221 23555543 3336778899999999999999985 67888899
Q ss_pred EEEecccceeeCCCceeeeCCCcEEEEeEEeeCCC-CCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 81 l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
|.|.+.|.+..+-.+..+..|+.+.|.|.+.+.|. |. +.|+++++++.... +....+.+. -|.+.+...
T Consensus 701 L~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr--~~W~k~d~pil~t~----rh~f~d~dQ----llvv~~~~~ 770 (873)
T KOG4194|consen 701 LTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPR--LEWFKEDKPILITE----RHTFPDGDQ----LLVVKENLV 770 (873)
T ss_pred EEEecCCcccccccceEEEecceEEEEEecCCCCCCcc--ccccCCCCceEEee----cccCCCCCe----EEEEEehhh
Confidence 99998876666666778999999999999988765 54 99999998875432 122233322 378888889
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|+|...+.
T Consensus 771 ~daG~yTcem~~~ 783 (873)
T KOG4194|consen 771 EDAGIYTCEMSNT 783 (873)
T ss_pred hhcceEEEEEEee
Confidence 9999999999986
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=135.54 Aligned_cols=159 Identities=29% Similarity=0.393 Sum_probs=120.1
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFFV 79 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~ 79 (212)
.|.|.+.+.|.|.+.|.+++. .++ .++|+... .++.|.|.+++..|.|.|.|.+.++. ..+..+
T Consensus 159 ~f~c~vn~e~~p~i~w~kn~~--pl~-------~~~r~i~l-----psG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a 224 (1381)
T KOG4221|consen 159 LFSCEVNAEPVPTIMWLKNDQ--PLP-------LDSRVIVL-----PSGALEISGLQPSDTGEYRCVVTGGASQRTSNEA 224 (1381)
T ss_pred EEEEEEcCccCceeEEecccc--ccc-------CCCcEEEc-----CCCcEEecccccCCCceEEEEEecCCcCCcccee
Confidence 589999999999999999873 222 13455554 45689999999999999999999863 346677
Q ss_pred EEEEeccc------ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEE
Q psy13371 80 NLNVVVPT------AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 80 ~l~v~~~~------~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (212)
.|+|...+ .++..|....+..|+++.|.|.+.+.|.|. |.|.+++..+..+. .+...... +.|.
T Consensus 225 ~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~--v~Wlrng~~i~~ds---~rivl~g~-----~sll 294 (1381)
T KOG4221|consen 225 ELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPS--VKWLRNGEKISVDS---YRIVLVGG-----SSLL 294 (1381)
T ss_pred EEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCc--eEEeeCCeeeeecc---eEEEEecc-----cceE
Confidence 88887322 134556677889999999999999998888 99999999886443 12222222 2399
Q ss_pred EeeeeecCCEEEEEEcccC---CeeEEEEEEeec
Q psy13371 154 IQQAELKDSGKYSCSPSNA---DVASVYVHVLNG 184 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~---~~~~~~~~v~~~ 184 (212)
|++++..|+|.|+|.|.|. ..+...+.|+..
T Consensus 295 iS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~ 328 (1381)
T KOG4221|consen 295 ISNATDDDSGKYTCRATNTNDSIDASAEVTVLAP 328 (1381)
T ss_pred EeccccccCceEEEEecCCCcccccceEEEEEcC
Confidence 9999999999999999984 445556666544
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-18 Score=136.56 Aligned_cols=148 Identities=23% Similarity=0.397 Sum_probs=116.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|+|.+.+.|.|.|.|+|++ ..+..++ .|+.+. +..+|.|.+++..|+|.|+|.+.|. ......+
T Consensus 255 v~leCvvs~~p~p~v~Wlrng--~~i~~ds------~rivl~-----g~~slliS~a~~~dSg~YtC~Atn~~D~idasa 321 (1381)
T KOG4221|consen 255 VVLECVVSGVPKPSVKWLRNG--EKISVDS------YRIVLV-----GGSSLLISNATDDDSGKYTCRATNTNDSIDASA 321 (1381)
T ss_pred EEEEEEecCCCCCceEEeeCC--eeeeecc------eEEEEe-----cccceEEeccccccCceEEEEecCCCcccccce
Confidence 479999999999999999976 3333222 244443 4558999999999999999999985 4566778
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|+|..+|..+..|......++.++.+.|.+.+.|.|. +.|+++|..+.. +....+...+. |.|.-+..
T Consensus 322 ev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~--v~w~kNgd~~ip----sdy~ki~~~~~-----lrIlgi~~ 390 (1381)
T KOG4221|consen 322 EVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPT--VRWYKNGDRIIP----SDYFKIVGGGN-----LRILGIVK 390 (1381)
T ss_pred EEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcce--EEEEecCcccCc----ccceEecCCCC-----cEEEEEec
Confidence 88999998888888888888999999999998876666 999999987743 22334444443 77777788
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
.|.|.|.|.+.|+
T Consensus 391 sdeg~yQcvaen~ 403 (1381)
T KOG4221|consen 391 SDEGFYQCVAEND 403 (1381)
T ss_pred ccchhhhhhhccC
Confidence 9999999999997
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.3e-16 Score=114.99 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=93.4
Q ss_pred CeeEeee-----CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc
Q psy13371 1 MLHQRKL-----KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV 74 (212)
Q Consensus 1 ~~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~ 74 (212)
+.|.|.+ .|.|.+.+.|+|++.. . .+.... .....|.|.++..+|+|.|+|.+.|. +.
T Consensus 44 ~~l~C~~~~~~~~g~p~~~i~W~K~g~~--~----------~~~~~~----~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~ 107 (326)
T PHA02785 44 VILPCPQINTLSSGYNILDILWEKRGAD--N----------DRIIPI----DNGSNMLILNPTQSDSGIYICITKNETYC 107 (326)
T ss_pred EEEECCCccccccCCCCceEEEEECCCc--c----------ceEEEc----cCCceEEEcccCcccCeEEEEEEECCCcc
Confidence 4689997 6889999999998631 0 011111 12225778999999999999999986 34
Q ss_pred eeEEEEEEEecccc--eeeCCCceeeeCCCcEEEEeEE-----eeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce
Q psy13371 75 RSFFVNLNVVVPTA--EILGSPDLHVDEGSTINLTCSI-----KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147 (212)
Q Consensus 75 ~~~~~~l~v~~~~~--~~~~~~~~~~~~g~~~~l~C~~-----~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (212)
....+.|+|..... ....+....+.+|..+.+.|.. .+++.| .+.|+++.. + ...+......
T Consensus 108 ~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~--~i~W~k~~~-~-----~~~r~~~~~~--- 176 (326)
T PHA02785 108 DMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNA--DIIWSGHRR-L-----RNKRLKQRTP--- 176 (326)
T ss_pred eEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCc--eEEEccCCc-c-----CCcceEecCC---
Confidence 55567777754321 1111222346689999999972 234444 499986542 2 1112222222
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+++.+|.|.|+|.+.|.
T Consensus 177 --~~L~i~~v~~~d~G~Y~C~~~n~ 199 (326)
T PHA02785 177 --GIITIEDVRKNDAGYYTCVLKYI 199 (326)
T ss_pred --CeEEEeecChhhCeEEEEEEEec
Confidence 24999999999999999999986
|
|
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=98.91 Aligned_cols=122 Identities=19% Similarity=0.199 Sum_probs=83.0
Q ss_pred EEEEcccCCCCCEEEEEEecCC-CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEE
Q psy13371 51 TLHIKWAQKRDAGVYECQLSTQ-PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129 (212)
Q Consensus 51 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~ 129 (212)
+|+|.+++.+|+|.|.|.+.+. +.....+.|.|..+|.....+.......|+.+.|.|.+.+.+++.+.+.|++++...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 7999999999999999999875 456777888888877665555544455788999999999875455679999987542
Q ss_pred Ee-----eCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 130 SY-----DSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 130 ~~-----~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.. ............++.+ ..+.|.+.....++.+.|+|.+.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence 11 0000001122233333 2355776544445566999999886
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-15 Score=86.56 Aligned_cols=74 Identities=23% Similarity=0.409 Sum_probs=55.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|++. .+... +.|+.+.. ...+..+|+|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~--~i~~~------~~r~~~~~-~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a 71 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNE--MVQYN------TDRISLYQ-DNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHA 71 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCE--ECcCC------CCeEEEEE-cCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEE
Confidence 5799999999999999999873 22211 24666653 2334468999999999999999999996 5566666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 72 ~L~V 75 (75)
T cd05892 72 RLDV 75 (75)
T ss_pred EEeC
Confidence 6653
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-14 Score=86.31 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=66.3
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
...+.+..+..|+.+.|.|.+.|.|.|. +.|++++..+... ......... ..+.|.|.++..+|+|.|+|.+
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~~~G~p~p~--v~W~kdg~~l~~~----~~~~~~~~~--~~s~L~I~~~~~~D~G~Ytc~a 75 (98)
T cd05762 4 IQFPEDMKVRAGESVELFCKVTGTQPIT--CTWMKFRKQIQEG----EGIKIENTE--NSSKLTITEGQQEHCGCYTLEV 75 (98)
T ss_pred EECCcCEEEECCCEEEEEEEEcccCCCc--eEEEECCEEecCC----CcEEEEecC--CeeEEEECCCChhhCEEEEEEE
Confidence 4456677899999999999999988777 9999999988421 122222211 1256999999999999999999
Q ss_pred ccC---CeeEEEEEEeecccC
Q psy13371 170 SNA---DVASVYVHVLNGEYT 187 (212)
Q Consensus 170 ~n~---~~~~~~~~v~~~~~~ 187 (212)
.|+ ....+.+.|...+.+
T Consensus 76 ~N~~G~~~~~~~l~V~~~P~p 96 (98)
T cd05762 76 ENKLGSRQAQVNLTVVDKPDP 96 (98)
T ss_pred EcCCCceeEEEEEEEecCCCC
Confidence 998 445566666555443
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=83.77 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=54.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|++. .+... ..|+.... ...+...|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~--~l~~~------~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a 71 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENE--SLTHN------TDRVSMHQ-DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTA 71 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCE--ECCCC------CCeEEEEE-cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEE
Confidence 5799999999999999999873 22211 23555542 2223447999999999999999999996 5556666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 72 ~L~V 75 (75)
T cd05893 72 RLDV 75 (75)
T ss_pred EEeC
Confidence 6543
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=81.47 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=49.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
|.|.|.++|.|.|.+.|+|++. .+.. ......|.|.++..+|+|.|+|.+.|. +..+..+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~--~l~~-----------------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~ 61 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGK--LISG-----------------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRI 61 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCE--ECcc-----------------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEE
Confidence 5799999999999999999873 2221 012348999999999999999999986 4455555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.+++
T Consensus 62 ~~~l 65 (67)
T cd05863 62 SLEL 65 (67)
T ss_pred EEEE
Confidence 5554
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-14 Score=81.53 Aligned_cols=73 Identities=23% Similarity=0.343 Sum_probs=53.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. . +... ..|+.+.. ...+..+|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~-~-i~~~------~~r~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNE-M-LTYN------TDRISLYQ-DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNA 71 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCE-E-CCCC------CCcEEEEE-cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEE
Confidence 4799999999999999999873 2 2211 23555542 2334567999999999999999999996 5556666
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 72 ~l~ 74 (75)
T cd05744 72 RLD 74 (75)
T ss_pred EEe
Confidence 554
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=116.38 Aligned_cols=150 Identities=23% Similarity=0.410 Sum_probs=117.2
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.+.|.+.|.|.|.+.|.+.++ .++ .+|+.+.. .+.+|.|.+++..|+|.|.|.+.+. +.......
T Consensus 244 ~f~c~v~GdP~P~Vrwkk~~~--~~P--------~~ry~i~~----d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ 309 (1281)
T KOG4222|consen 244 EFDCRVGGDPQPTVRWKKDDP--SLP--------RSRYSILD----DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASAT 309 (1281)
T ss_pred ccccccCCCCCCceeeeccCC--CCC--------ccceeeee----ccccccccccCCCcccceeeeccccccccccccc
Confidence 478999999999999999764 232 34666663 3468999999999999999999986 56777888
Q ss_pred EEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeE-EEe---eCCCCceeEEeecCceEEEEEEEee
Q psy13371 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV-ISY---DSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 81 l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
++|..++.+...+.+..+..|..++|.|.+.++|.|. ++|.+.+.. +-. ......+..+...+ .|.|.+
T Consensus 310 ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~Pa--vfW~keg~q~llf~~~p~~~~~r~svs~~g-----~L~it~ 382 (1281)
T KOG4222|consen 310 LTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPA--VFWLKEGSQDLLFSASPPSSNGRGSVSPTG-----TLTITN 382 (1281)
T ss_pred eEEecCcccccccCccccccCceEEeeeecCCCCCcc--eEEeccCcceecccCCCCCcCccceecCCC-----Cccccc
Confidence 9999998887777778888999999999999998888 999987753 211 11122233333333 399999
Q ss_pred eeecCCEEEEEEcccC
Q psy13371 157 AELKDSGKYSCSPSNA 172 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~ 172 (212)
++..|.|.|.|...+.
T Consensus 383 v~~~d~g~Yvcq~~~~ 398 (1281)
T KOG4222|consen 383 VRQSDEGYYVCQTQTS 398 (1281)
T ss_pred ccccccceEeeccccc
Confidence 9999999999998765
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=116.34 Aligned_cols=157 Identities=23% Similarity=0.314 Sum_probs=116.7
Q ss_pred eeEee-eCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--CceeEE
Q psy13371 2 LHQRK-LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSFF 78 (212)
Q Consensus 2 ~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~ 78 (212)
.|+|. -.|.|.|.+.|.|++. .+. .+...++.+. ..+.|.|.+++.+|+|.|.|.+.|. ...+..
T Consensus 150 vlEcgpP~ghpeptvSw~Kdg~--pl~-----~~~~~~~~li-----sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~ 217 (1281)
T KOG4222|consen 150 VLECGPPRGHPEPTVSWVKDGK--PLD-----HYDVPIIALI-----SGGNLLISNVRKSDEGTYACVATNMVGERESIP 217 (1281)
T ss_pred EEeccCCCCCCCCcceeecCCC--ccc-----cccceeEEEe-----cCCcEEEeccccCCCceeeeeeccccccccccc
Confidence 46675 3456889999999884 221 1112233333 3558999999999999999999985 356777
Q ss_pred EEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 79 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
.+|+|.+.|.+...+....+..|..+.+.|.+.++|.|. +.|.+.+..+. ..+..+..+.. +|.|.++.
T Consensus 218 A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~--Vrwkk~~~~~P-----~~ry~i~~d~q----tl~i~r~t 286 (1281)
T KOG4222|consen 218 ARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPT--VRWKKDDPSLP-----RSRYSILDDTQ----TLRIDRVT 286 (1281)
T ss_pred ceeeeccCCccccccccceeecccccccccccCCCCCCc--eeeeccCCCCC-----ccceeeeeccc----cccccccC
Confidence 899999999888888889999999999999999988887 89988776552 22333444322 49999999
Q ss_pred ecCCEEEEEEcccC---CeeEEEEEE
Q psy13371 159 LKDSGKYSCSPSNA---DVASVYVHV 181 (212)
Q Consensus 159 ~~d~g~y~C~~~n~---~~~~~~~~v 181 (212)
..|.|.|.|.+.|. ......+.|
T Consensus 287 p~deg~y~C~a~n~vG~l~asa~ltV 312 (1281)
T KOG4222|consen 287 PTDEGTYVCPAENLVGGLEASATLTV 312 (1281)
T ss_pred CCcccceeeeccccccccccccceEE
Confidence 99999999999996 334444444
|
|
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=83.34 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=60.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.|.|.|.|++++. .++..+......+.|+.+.. ....+.+|.|.+++.+|+|.|+|.+......+..+.
T Consensus 15 v~L~C~v~g~~~~~v~W~k~~~-~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~ 92 (95)
T cd05882 15 VTLKCGVKEHDNSSLQWSNTAQ-QTLYFGEKRALRDNRIQLVK-STPTELIISISNVQLSDEGEYTCSIFTMPVRTAKAT 92 (95)
T ss_pred EEEEEEEeCCCCCeEEEeccCc-cEEEeCCeEEEeCCeEEEEe-CCCceEEEEECCCCcccCEEEEEEEEeeccccEEEE
Confidence 3699999999999999999875 33344444444567887653 344678999999999999999999998655555555
Q ss_pred EE
Q psy13371 81 LN 82 (212)
Q Consensus 81 l~ 82 (212)
|.
T Consensus 93 ~~ 94 (95)
T cd05882 93 VT 94 (95)
T ss_pred EE
Confidence 54
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-14 Score=81.89 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=52.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|++. .+. .+.|+.+. .+.+|.|.+++.+|+|.|.|.+.|. +..+..+
T Consensus 4 ~~l~C~~~g~P~p~v~W~k~~~-~l~--------~~~r~~~~-----~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 69 (73)
T cd05852 4 VIIECKPKAAPKPKFSWSKGTE-LLV--------NNSRISIW-----DDGSLEILNITKLDEGSYTCFAENNRGKANSTG 69 (73)
T ss_pred EEEEEecceeCCCEEEEEeCCE-ecc--------cCCCEEEc-----CCCEEEECcCChhHCEEEEEEEECCCCceeEEE
Confidence 4699999999999999999763 222 13466654 3447999999999999999999996 4555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 70 ~l~ 72 (73)
T cd05852 70 VLS 72 (73)
T ss_pred EEE
Confidence 554
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=80.04 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=53.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+. .+.++.+. .......|.|.++..+|+|.|+|.+.|. +..+..+
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~--~l~-------~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGK--PLK-------LSGRVQIE--TTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATI 70 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCE--EcC-------CCCeEEEE--ECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEE
Confidence 4699999999999999999873 221 13355554 2345678999999999999999999996 4555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 71 ~l~ 73 (74)
T cd05748 71 NVK 73 (74)
T ss_pred EEE
Confidence 554
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=83.92 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=59.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.++|.|.|.+.|+|++. .+.. +.++.+. .......|.|.++..+|+|.|+|.+.|. +.....+
T Consensus 18 v~l~C~~~G~p~p~v~W~kdg~--~l~~-------~~~~~~~--~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~ 86 (98)
T cd05762 18 VELFCKVTGTQPITCTWMKFRK--QIQE-------GEGIKIE--NTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQV 86 (98)
T ss_pred EEEEEEEcccCCCceEEEECCE--EecC-------CCcEEEE--ecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEE
Confidence 3689999999999999999873 2221 2345544 2345668999999999999999999996 6677788
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|.+.|
T Consensus 87 ~l~V~~~P 94 (98)
T cd05762 87 NLTVVDKP 94 (98)
T ss_pred EEEEecCC
Confidence 88887755
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=81.47 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=56.9
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|.....+.+..+.+|+.+.|.|.+.|.|.|. +.|++++..+.. ... ....+ ..|.|.++..+|.|.|+
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~--v~W~k~~~~~~~----~~~--~~~~~----~~L~I~~v~~~D~G~Y~ 69 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFALGNPVPV--IRWRKILEPMPA----TAE--ISMSG----AVLKIFNIQPEDEGTYE 69 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEecccCCCE--EEEEECCcCCCC----CCE--EecCC----CEEEECcCChhhCEEEE
Confidence 3445566778899999999999999998887 999999876521 111 11122 24999999999999999
Q ss_pred EEcccC
Q psy13371 167 CSPSNA 172 (212)
Q Consensus 167 C~~~n~ 172 (212)
|.|.|.
T Consensus 70 C~A~N~ 75 (88)
T cd05851 70 CEAENI 75 (88)
T ss_pred EEEEcC
Confidence 999998
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=81.83 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=53.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+... ++|+.+. .......|.|.++..+|+|.|+|.+.|. +..+..+
T Consensus 13 v~l~c~~~G~P~P~v~W~k~~~-~i~~~-------~~r~~~~--~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 13 LRLDVPISGEPAPTVTWSRGDK-AFTET-------EGRVRVE--SYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEeeEeecCCCeEEEEECCE-ECccC-------CCeEEEE--EcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 4699999999999999999873 22211 2355554 2334678999999999999999999996 4555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05894 83 FVK 85 (86)
T ss_pred EEE
Confidence 554
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-13 Score=81.56 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=55.6
Q ss_pred CceeeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEEeeCCCCceeEEeec---CceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 94 PDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVISYDSSRGGVSVITEK---GEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
....+.+|+.+.|.|.+.+ .|.|. +.|+++|.++... ........ +....+.|.|.++..+|+|.|+|.|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~--v~W~Kdg~~i~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A 84 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPH--INWTYDNRTLTNK----LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLA 84 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCc--cEEEeCCeeCCCC----cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEE
Confidence 4567889999999999999 66666 9999999888421 11121111 2234467999999999999999999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.|.
T Consensus 85 ~N~ 87 (101)
T cd04975 85 SNS 87 (101)
T ss_pred ECC
Confidence 998
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=78.70 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=50.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|+++ .++ ..++... .+..|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~--~~~--------~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 65 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDG--ELP--------KGRAEIL-----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASA 65 (69)
T ss_pred CEEEEECccCCCCEEEEEECCc--cCC--------CCcEEEe-----eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEE
Confidence 4799999999999999999863 121 2344443 3347999999999999999999996 4455555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 66 ~l~ 68 (69)
T cd05725 66 SLT 68 (69)
T ss_pred EEE
Confidence 554
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=79.87 Aligned_cols=68 Identities=19% Similarity=0.392 Sum_probs=49.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.+ ..++.+.. +..|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 2 v~l~C~~~G~P~p~v~W~k~g~-~~~~--------~~~~~~~~-----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 67 (71)
T cd05723 2 VIFECEVTGKPTPTVKWVKNGD-MVIP--------SDYFKIVK-----EHNLQVLGLVKSDEGFYQCIAENDVGNVQASA 67 (71)
T ss_pred EEEEEEEEEeCCCEEEEEECCe-ECCC--------CCCEEEEe-----cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEE
Confidence 4699999999999999999874 2222 23444431 235788899999999999999996 4555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 68 ~L~ 70 (71)
T cd05723 68 QLI 70 (71)
T ss_pred EEE
Confidence 554
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=77.97 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=50.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. . +.... ..+..|+|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~-~~~~-~--------~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 66 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDG-PLSP-N--------RTKKL----NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHY 66 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCc-CCCC-C--------ceeEE----cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEE
Confidence 5799999999999999999874 2211 1 11111 13458999999999999999999996 4555555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 67 ~l~V 70 (71)
T cd05876 67 TVTV 70 (71)
T ss_pred EEEE
Confidence 5554
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-13 Score=78.65 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=52.0
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.+.|.|.|.+.|+|++.. ..+.. .+.|+.... ....|.|.+++.+|+|.|.|.+.|. +..+..+.
T Consensus 2 ~l~C~~~G~P~P~v~W~k~~~~-~~~~~-----~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~ 71 (75)
T cd05763 2 RLECAATGHPTPQIAWQKDGGT-DFPAA-----RERRMHVMP----EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANAT 71 (75)
T ss_pred EeEeecccccCCEEEEEeCCCc-cCCcc-----cccceEEec----CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEE
Confidence 6899999999999999998742 11111 123444431 2347899999999999999999985 55566666
Q ss_pred EEE
Q psy13371 81 LNV 83 (212)
Q Consensus 81 l~v 83 (212)
|.|
T Consensus 72 l~V 74 (75)
T cd05763 72 LTV 74 (75)
T ss_pred EEE
Confidence 665
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=77.54 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=49.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
|.|.|.+.|.|.|.+.|+|++. .+... .++.. ...+|.|.++..+|+|.|+|.+.|. +.....+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~--~l~~~-------~~~~~------~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~ 65 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGK--LISEK-------NRTKK------SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRL 65 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCE--ECCCC-------CEEEc------CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEE
Confidence 6799999999999999999773 22211 12211 3358999999999999999999986 3445555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.+++
T Consensus 66 ~~~~ 69 (71)
T cd04976 66 TFTL 69 (71)
T ss_pred EEEE
Confidence 5544
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=78.51 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=55.6
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEe--ecCceEEEEEEEeeeeecCCEEEEEEcccC---Cee
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT--EKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVA 175 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~---~~~ 175 (212)
|+.++|.|.+.+.|.|. +.|.+++..+... ..+.... ..+....+.|.|.++..+|+|.|+|.|.|. ...
T Consensus 1 g~~~~l~C~~~g~p~~~--i~W~k~~~~i~~~---~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 75 (88)
T cd05735 1 GQKKEMSCTAHGEKPII--VRWEKEDRIINPE---MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRG 75 (88)
T ss_pred CCeEEEEEEEECCCCCE--EEEeeCCEECCCC---CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceE
Confidence 68899999999886665 9999999876322 1222222 233444567999999999999999999998 344
Q ss_pred EEEEEEee
Q psy13371 176 SVYVHVLN 183 (212)
Q Consensus 176 ~~~~~v~~ 183 (212)
.+.+.|..
T Consensus 76 ~~~L~V~~ 83 (88)
T cd05735 76 IIQLTVQE 83 (88)
T ss_pred EEEEEEeC
Confidence 45555543
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=79.27 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=50.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.++... .+..|+|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 5 v~l~C~~~g~P~p~i~W~k~g~--~~~~-------~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 70 (74)
T cd05745 5 VDFLCEAQGYPQPVIAWTKGGS--QLSV-------DRRHLVL-----SSGTLRISRVALHDQGQYECQAVNIVGSQRTVA 70 (74)
T ss_pred EEEEeECCEecCCEEEEEECCE--ECCC-------CCCeEEc-----cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEE
Confidence 3699999999999999999773 2221 2233332 2348999999999999999999996 5555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 71 ~L~ 73 (74)
T cd05745 71 QLT 73 (74)
T ss_pred EEe
Confidence 554
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-13 Score=80.92 Aligned_cols=79 Identities=23% Similarity=0.223 Sum_probs=56.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++...... .........|+.+. .+..|+|.+++.+|+|.|+|.+.|. +.....+
T Consensus 4 v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~r~~v~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 4 VTFQCEATGNPQPAIFWQKEGSQNLLF-SYQPPQSSSRFSVS-----QTGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred EEEEEECCccCCCEEEEEeCCCcceee-cccCCCCCCeEEEC-----CCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 469999999999999999976422211 11011124566664 2347999999999999999999995 5667777
Q ss_pred EEEEec
Q psy13371 80 NLNVVV 85 (212)
Q Consensus 80 ~l~v~~ 85 (212)
.|.|..
T Consensus 78 ~l~V~~ 83 (90)
T cd05726 78 YLEVTD 83 (90)
T ss_pred EEEEee
Confidence 787765
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=77.81 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=49.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.++.+. .+..|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~-~~~~--------~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 66 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGV-QVTE--------SGKFHIS-----PEGYLAIRDVGVADQGRYECVARNTIGYASVSM 66 (69)
T ss_pred CEeEecceEeCCCEEEEEECCE-ECCC--------CCCEEEC-----CCCEEEECcCChhhCEEEEEEEECCCCcEEEEE
Confidence 5799999999999999999762 2221 2344443 2347999999999999999999986 4444444
Q ss_pred E
Q psy13371 80 N 80 (212)
Q Consensus 80 ~ 80 (212)
.
T Consensus 67 ~ 67 (69)
T cd05746 67 V 67 (69)
T ss_pred E
Confidence 3
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=78.81 Aligned_cols=72 Identities=29% Similarity=0.541 Sum_probs=55.1
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEe-ecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT-EKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
|....+.+|+.+.|.|.+.+.|.|. +.|++++..+... ...... ..+. ...|.|.++..+|+|.|+|.|.|
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~--v~W~k~g~~l~~~----~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N 79 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPE--VSWLKNDQALALS----DHYNVKVEQGK--YASLTIKGVSSEDSGKYGIVVKN 79 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCe--EEEEECCEECccC----CCEEEEEcCCC--EEEEEEccCChhhCEEEEEEEEE
Confidence 3456789999999999999988777 9999999877422 112222 2121 24599999999999999999999
Q ss_pred C
Q psy13371 172 A 172 (212)
Q Consensus 172 ~ 172 (212)
.
T Consensus 80 ~ 80 (92)
T cd05737 80 K 80 (92)
T ss_pred C
Confidence 8
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=77.93 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=56.1
Q ss_pred CeeEeeeCCCCCc--eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLLPT--RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.|.|.| .+.|+|++. .+.... .+.++.... ......+|.|.+++.+|+|.|+|.+.+. +..+.
T Consensus 3 ~~L~C~a~g~P~p~~~v~W~~~g~--~i~~~~----~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~ 75 (85)
T cd05854 3 LTLQCHASHDPTMDLTFTWSLDDF--PIDLDK----PNGHYRRME-VKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA 75 (85)
T ss_pred EEEEEEEecCCCCCeEEEEEECCe--EccccC----CCCcEEEEE-ecceEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence 4699999999987 589999763 222111 123432221 1224468999999999999999999996 56777
Q ss_pred EEEEEEeccc
Q psy13371 78 FVNLNVVVPT 87 (212)
Q Consensus 78 ~~~l~v~~~~ 87 (212)
.+.|.|..+|
T Consensus 76 ~~~L~V~~~P 85 (85)
T cd05854 76 SATLVVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 8888887654
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=78.58 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=57.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeC--CCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR--EGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.|.|.+.+.|+|++. .+... ..|+.+.... ......|.|.++..+|+|.|+|.+.|. +....
T Consensus 4 ~~l~C~~~g~p~~~i~W~k~~~--~i~~~------~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 75 (88)
T cd05735 4 KEMSCTAHGEKPIIVRWEKEDR--IINPE------MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRG 75 (88)
T ss_pred EEEEEEEECCCCCEEEEeeCCE--ECCCC------CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceE
Confidence 4699999999999999999773 22111 2355544211 112357999999999999999999996 56677
Q ss_pred EEEEEEeccc
Q psy13371 78 FVNLNVVVPT 87 (212)
Q Consensus 78 ~~~l~v~~~~ 87 (212)
.+.|.|..+|
T Consensus 76 ~~~L~V~~~P 85 (88)
T cd05735 76 IIQLTVQEPP 85 (88)
T ss_pred EEEEEEeCCC
Confidence 7888887654
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-13 Score=78.06 Aligned_cols=62 Identities=31% Similarity=0.612 Sum_probs=49.1
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+|+.+.|.|.+.+.|.|. +.|++++..+... ........+ .|.|.++..+|.|.|+|.|.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~--i~W~k~g~~~~~~----~~~~~~~~~-----~L~I~~v~~~D~G~Y~C~A~N~ 62 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPV--IAWTKGGSQLSVD----RRHLVLSSG-----TLRISRVALHDQGQYECQAVNI 62 (74)
T ss_pred CCCeEEEEeECCEecCCE--EEEEECCEECCCC----CCeEEccCC-----eEEEeeCCHHhCEEEEEEEEeC
Confidence 588999999999998887 9999999876321 122222222 4999999999999999999998
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.5e-13 Score=81.80 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=55.4
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec----CceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK----GEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
...+..|+.+.|.|.+.+.|.|. +.|++++.++.... ....... .....++|.|.++..+|+|.|+|.|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~--v~W~kdg~~l~~~~----~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~ 85 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQ--IRWLKDNRTLIENL----TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQ 85 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCc--eEEEECCEECcCCc----ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEE
Confidence 45678899999999999998887 99999999874221 1111111 12233579999999999999999999
Q ss_pred cCC
Q psy13371 171 NAD 173 (212)
Q Consensus 171 n~~ 173 (212)
|+.
T Consensus 86 N~~ 88 (101)
T cd05859 86 NED 88 (101)
T ss_pred cCC
Confidence 983
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.46 E-value=8e-13 Score=81.32 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=54.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|........... ...++|+.+. ...+..+|+|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 19 v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~--~~~~~r~~v~--~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 94 (98)
T cd05870 19 ATLSCKAEGEPIPEITWKRASDGHTFSEGD--KSPDGRIEVK--GQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSM 94 (98)
T ss_pred EEEEEecccCCCCeEEEEECCCCceeccCC--cCcCceEEEe--ecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEE
Confidence 368999999999999999964322221110 0123567664 2334568999999999999999999996 4455555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|+
T Consensus 95 ~l~ 97 (98)
T cd05870 95 YLD 97 (98)
T ss_pred EEe
Confidence 554
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=77.72 Aligned_cols=80 Identities=23% Similarity=0.478 Sum_probs=60.3
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|..+..|.+..+..|+.+.|.|.+.+.|.|. +.|++++..+.. ..+....... ..+.|.|.++..+|+|.|
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~--v~W~k~g~~l~~----~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y 74 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPT--VTWMREGQIIVS----SQRHQITSTE--YKSTFEISKVQMSDEGNY 74 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCE--EEEEECCEECCC----CCcEEEEEcC--CeeEEEECCCCcccCEeE
Confidence 34455667788899999999999999988776 999999886632 1122222221 124699999999999999
Q ss_pred EEEcccCC
Q psy13371 166 SCSPSNAD 173 (212)
Q Consensus 166 ~C~~~n~~ 173 (212)
+|.|.|..
T Consensus 75 ~C~a~N~~ 82 (92)
T cd05747 75 TVVVENSE 82 (92)
T ss_pred EEEEEcCC
Confidence 99999983
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-13 Score=77.77 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=51.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. . +. .+.|+.+. .+.+|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 4 v~L~C~~~g~P~p~v~W~k~~~-~-~~-------~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 69 (73)
T cd04969 4 VIIECKPKAAPKPTISWSKGTE-L-LT-------NSSRICIW-----PDGSLEILNVTKSDEGKYTCFAENFFGKANSTG 69 (73)
T ss_pred EEEEEeeeEcCCCEEEEEECCE-E-cc-------cCCCEEEC-----CCCeEEEccCChhHCEEEEEEEECCCCceEEEE
Confidence 3689999999999999999873 2 21 13455543 2347999999999999999999996 4555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 70 ~l~ 72 (73)
T cd04969 70 SLS 72 (73)
T ss_pred EEE
Confidence 554
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.3e-13 Score=76.91 Aligned_cols=62 Identities=26% Similarity=0.480 Sum_probs=48.5
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
|+.+.|.|.+.+.|.|. +.|++++..+.. ..+.....++ .|.|.+++.+|.|.|+|.|.|..
T Consensus 1 G~~~~l~C~~~g~P~p~--v~W~k~~~~l~~----~~r~~~~~~g-----~L~I~~v~~~D~G~Y~C~A~N~~ 62 (73)
T cd05852 1 GGRVIIECKPKAAPKPK--FSWSKGTELLVN----NSRISIWDDG-----SLEILNITKLDEGSYTCFAENNR 62 (73)
T ss_pred CCeEEEEEecceeCCCE--EEEEeCCEeccc----CCCEEEcCCC-----EEEECcCChhHCEEEEEEEECCC
Confidence 67899999999988776 999999876631 2233333333 49999999999999999999983
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-12 Score=76.22 Aligned_cols=78 Identities=26% Similarity=0.380 Sum_probs=53.6
Q ss_pred CcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC---CeeEEE
Q psy13371 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVY 178 (212)
Q Consensus 102 ~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~---~~~~~~ 178 (212)
+.+.|.|.+.+.|.|...+.|++++.++...... ........ ....+.|.|.+++..|+|.|+|.|.|. ...++.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~-~~~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPN-GHYRRMEV-KETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCC-CcEEEEEe-cceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 4689999999999887778999999887433211 11111110 011246999999999999999999998 334444
Q ss_pred EEE
Q psy13371 179 VHV 181 (212)
Q Consensus 179 ~~v 181 (212)
+.|
T Consensus 79 L~V 81 (85)
T cd05854 79 LVV 81 (85)
T ss_pred EEE
Confidence 444
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=79.44 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=57.9
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNL 81 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l 81 (212)
.|.|.+++.|.+.|.|++.+. ..+..+......++|+.... ...+..+|+|.+++.+|+|.|+|.+.+....+..+.|
T Consensus 16 ~L~C~~~~~p~~~v~W~~~~~-~~l~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l 93 (95)
T cd07701 16 NLTCRVDQNDNTSLQWSNPAQ-QTLYFDDKKALRDNRIELVR-ASWHELSISISDVSLSDEGQYTCSLFTMPVKTSKAYL 93 (95)
T ss_pred EEEEEEecCCceEEEEeCCCC-eEEEEcCcccccCCCEEEEE-CCCCcEEEEECcCCcccCEEEEEEeEeecCccEEEEE
Confidence 699999999999999997654 22222222223467888743 3456789999999999999999999986545555555
Q ss_pred EE
Q psy13371 82 NV 83 (212)
Q Consensus 82 ~v 83 (212)
.|
T Consensus 94 ~v 95 (95)
T cd07701 94 TV 95 (95)
T ss_pred EC
Confidence 43
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-13 Score=78.17 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=47.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|+|.++.. .+........++|+... .+.+|.|.++..+|+|.|.|.+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~-~~~~~~~~~~~~r~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~ 66 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRG-HPQHTHTCCLAGRIQLL-----SNGSLLIKHVLEEDSGYYLCKVSND 66 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCcc-ccccccccccCCCEEEe-----cCCeEEECcCCcccCEEEEEEEEeC
Confidence 479999999999999999975321 11110011124566554 3468999999999999999999986
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=79.71 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=51.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.++.+.. ......+|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 19 v~L~C~v~G~P~p~v~W~k~g~-~l~~--------~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 19 LNLTCTVFGDPDPEVSWLKNDQ-ALAL--------SDHYNVKV-EQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred EEEEEEEEecCCCeEEEEECCE-ECcc--------CCCEEEEE-cCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 3699999999999999999763 2221 33454442 1234568999999999999999999985 4455554
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.+.
T Consensus 89 ~v~ 91 (92)
T cd05737 89 TVS 91 (92)
T ss_pred EEe
Confidence 443
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-12 Score=76.11 Aligned_cols=72 Identities=24% Similarity=0.402 Sum_probs=55.1
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
...+..|+.+.|.|.+.+.|.|. +.|++++.++... ..+........ .+.|.|.++..+|+|.|+|.|.|..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~--v~W~k~~~~i~~~---~~r~~~~~~~~--~~~L~I~~~~~~D~G~Y~c~a~N~~ 75 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPT--VTWSRGDKAFTET---EGRVRVESYKD--LSSFVIEGAEREDEGVYTITVTNPV 75 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCe--EEEEECCEECccC---CCeEEEEEcCC--eEEEEECCCccCcCEEEEEEEEeCC
Confidence 45678999999999999998887 9999999877422 11222222211 2469999999999999999999983
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=76.80 Aligned_cols=60 Identities=23% Similarity=0.411 Sum_probs=45.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|+|++. . +... ..++.+.. ....|.|.++..+|+|.|.|.+.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~-~-l~~~------~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~ 60 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGT-P-LSDG------QGNYSVSS----KERTLTLRSAGPDDSGLYYCCAHNA 60 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCE-E-CCCC------CccEEEeC----CCCEEEEeeCCcccCEEEEEEEEeC
Confidence 5799999999999999999873 2 2211 12333331 2348999999999999999999996
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-12 Score=76.73 Aligned_cols=77 Identities=27% Similarity=0.555 Sum_probs=59.2
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+.. ..+......+ ..+.|.|.++..+|+|.|+|.
T Consensus 3 ~~~~~~~~~v~~G~~~~l~c~~~~~p~~~--v~W~~~~~~l~~----~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~ 74 (90)
T PF07679_consen 3 FTKKPKDVTVKEGESVTLECEVSGNPPPT--VTWYKNGRPLTS----SQRYQIESDG--GSSSLTIKNVTREDAGTYTCV 74 (90)
T ss_dssp EEEESSEEEEETTSEEEEEEEEEESSSSE--EEEEETTEEEES----SSSEEEEEET--TEEEEEESSESGGGSEEEEEE
T ss_pred EEEecCCEEEeCCCEEEEEEEEEeCCCCc--ccccccccceee----eeeeeeeccc--ceeEEccCCCChhhCEEEEEE
Confidence 34455778899999999999999886665 999999988853 2222333332 235699999999999999999
Q ss_pred cccCC
Q psy13371 169 PSNAD 173 (212)
Q Consensus 169 ~~n~~ 173 (212)
+.|..
T Consensus 75 ~~n~~ 79 (90)
T PF07679_consen 75 ASNSS 79 (90)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99983
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=77.52 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=53.9
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCC-CCceEEEEE-cCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYH-HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~-p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
.|....+..|+.+.|.|.+.+.|. |. +.|++ ++..+... ..+....... ...++|.|.++..+|+|.|+|.|
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~--i~W~~~~g~~l~~~---~~r~~v~~~~-~~~~~L~I~~v~~~D~G~YtC~A 79 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKD--ISWFSPNGEKLTPN---QQRISVVRND-DYSSTLTIYNANIDDAGIYKCVV 79 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCE--EEEECCCCcCcccc---CCeEEEEeCC-CCceEEEEeccChhhCEEEEEEE
Confidence 455667889999999999999875 45 99997 66555321 1122221111 12356999999999999999999
Q ss_pred ccCC
Q psy13371 170 SNAD 173 (212)
Q Consensus 170 ~n~~ 173 (212)
.|..
T Consensus 80 ~N~~ 83 (96)
T cd05865 80 SNED 83 (96)
T ss_pred EcCC
Confidence 9973
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=75.01 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=47.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
..|.|.+.|.|.|.+.|+|++. . +... .++ . ....|.|.++..+|+|.|+|.+.|. +..+...
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~-~-l~~~-------~~~--~-----~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~ 64 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQ-L-IVLN-------HTF--K-----RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRH 64 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCE-E-CCCC-------CEE--c-----cCCEEEECcCCHHHCEEEEEEEEECCCceeeEE
Confidence 3689999999999999999873 2 2211 111 1 2347999999999999999999996 4344444
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.+++
T Consensus 65 t~~l 68 (70)
T cd05864 65 TFQL 68 (70)
T ss_pred EEEE
Confidence 4433
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-12 Score=77.99 Aligned_cols=86 Identities=20% Similarity=0.356 Sum_probs=56.7
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCC-CceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR-GGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
|.....+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+...... .........+......+...+...+|+|.|
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~--i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPT--IQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeCCcCCCCE--EEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 4455667778899999999999999987776 9999999877542111 111222233322111122233468999999
Q ss_pred EEEcccCCe
Q psy13371 166 SCSPSNADV 174 (212)
Q Consensus 166 ~C~~~n~~~ 174 (212)
+|.|.|..+
T Consensus 80 ~C~a~N~~G 88 (100)
T cd07693 80 VCVAHNSLG 88 (100)
T ss_pred EEEEEcccc
Confidence 999999843
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-12 Score=75.99 Aligned_cols=72 Identities=22% Similarity=0.375 Sum_probs=54.7
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+... ... .... ..|.|.+++.+|+|.|+|.
T Consensus 4 ~~~~p~~~~~~~g~~v~l~C~~~g~P~p~--v~W~k~~~~~~~~----~~~-~~~~-----~~L~i~~v~~~D~G~Y~C~ 71 (88)
T cd04968 4 IVVFPKDTYALKGQNVTLECFALGNPVPQ--IKWRKVDGSMPSS----AEI-SMSG-----AVLKIPNIQFEDEGTYECE 71 (88)
T ss_pred EEECCCceEEeCCCcEEEEEEeeEeCCCE--EEEEECCCcCCCc----cEE-EEeC-----CEEEECCCCcccCEEEEEE
Confidence 34456677789999999999999987776 9999987654211 111 1122 2499999999999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
|.|.
T Consensus 72 a~N~ 75 (88)
T cd04968 72 AENI 75 (88)
T ss_pred EEEC
Confidence 9998
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.9e-13 Score=79.75 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=50.9
Q ss_pred CeeEeeeCCCCCceEEEEeeC---cceeeeecceeeecCCceEEEee-----CCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHR---DIHILTVGSYTYTSDQRFSAIHR-----REGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~---~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.|.|+|++ +..+.+.+ ..+...... .......|+|.+++.+|+|.|+|.+.|.
T Consensus 4 v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd04974 4 VEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDG------LPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNS 77 (90)
T ss_pred EEEEEEEeCCCCCeEEEEEecccCCceeCCCC------CceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecc
Confidence 369999999999999999964 11111111 111111111 1123457999999999999999999996
Q ss_pred -CceeEEEEEEE
Q psy13371 73 -PVRSFFVNLNV 83 (212)
Q Consensus 73 -~~~~~~~~l~v 83 (212)
+.....+.|.|
T Consensus 78 ~G~~~~sa~L~V 89 (90)
T cd04974 78 IGPSHHSAWLTV 89 (90)
T ss_pred cCcccCCEEEEe
Confidence 55566666665
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.5e-12 Score=76.98 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=58.2
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec--CceEEEEEEEeeeee-cCCEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK--GEVTTSYLLIQQAEL-KDSGKY 165 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~-~d~g~y 165 (212)
.+..+....+.+|+.+.|.|.+.+.|.|. .+.|.+++..+..... .+...... .....+.|.|.++.. +|.|.|
T Consensus 4 ~i~~~~~~~~~~G~~v~L~C~~~g~P~P~-~v~W~~~~~~i~~~~~--~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 4 IITSEATQYAILGDKGRVECFIFSTPPPD-RIVWTWKENELESGSS--GRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred eEcCCCcEEEeCCCcEEEEEEEcccCCCC-EeEEEECCEEccCCCC--CCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 44445566789999999999999887762 3899999987743321 12222221 122335699999998 558999
Q ss_pred EEEcccCCe
Q psy13371 166 SCSPSNADV 174 (212)
Q Consensus 166 ~C~~~n~~~ 174 (212)
+|.|.|..+
T Consensus 81 ~C~A~N~~G 89 (98)
T cd05758 81 NCTAWNSFG 89 (98)
T ss_pred EEEEEcCCC
Confidence 999999843
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=75.23 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=50.2
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFFV 79 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~ 79 (212)
.|.|.+.|.|.|.|.|+|++. .+... .+.|+... .+..|.|.+++.+|+|.|.|.+.|.. ..+..+
T Consensus 2 ~l~C~~~G~P~p~v~W~k~~~--~~~~~-----~~~~~~~~-----~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a 69 (74)
T cd05738 2 TMLCAASGNPDPEITWFKDFL--PVDTT-----SNGRIKQL-----RSGALQIENSEESDQGKYECVATNSAGTRYSAPA 69 (74)
T ss_pred EEEEEEeEecCCEEEEEECCE--ECccC-----CCCCEEEc-----CCcEEEECCCChhhCEEEEEEEECCCCceEcccE
Confidence 689999999999999999873 22110 13455443 34479999999999999999999863 234555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 70 ~l~v 73 (74)
T cd05738 70 NLYV 73 (74)
T ss_pred EEEE
Confidence 5544
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=78.09 Aligned_cols=80 Identities=20% Similarity=0.151 Sum_probs=55.3
Q ss_pred CeeEeeeCCCCCc--eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLLPT--RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.+.|.| .+.|++++. .+.... .+.++.... ......+|.|.+++.+|+|.|+|.+.|. +..+.
T Consensus 3 ~~L~C~~~g~P~p~i~~~W~~~g~-~i~~~~-----~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 75 (85)
T cd04970 3 ITLQCHASHDPTLDLTFTWSFNGV-PIDFDK-----DGGHYRRVG-GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSA 75 (85)
T ss_pred EEEEEEEecCCCCCeEEEEEECCe-EeeccC-----CCccEEEEe-cccccceEEEccCCHHhCeeeEEEEecCCCcEEE
Confidence 4699999999987 669998763 222111 012222211 1224568999999999999999999985 56677
Q ss_pred EEEEEEeccc
Q psy13371 78 FVNLNVVVPT 87 (212)
Q Consensus 78 ~~~l~v~~~~ 87 (212)
.+.|.|..+|
T Consensus 76 ~~~l~V~~pP 85 (85)
T cd04970 76 SADLIVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 7888887654
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.3e-12 Score=75.76 Aligned_cols=82 Identities=34% Similarity=0.545 Sum_probs=59.1
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|....+.+|+.+.|.|.+.+.|.|. +.|++++..+... .........+. .+.|.|.++..+|+|.|+|.|.|.
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~--i~W~k~~~~~~~~---~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~ 80 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPE--VIWFKNDQDIELS---EHYSVKLEQGK--YASLTIKGVTSEDSGKYSINVKNK 80 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCe--EEEEECCEECCCC---CCEEEEEcCCC--EEEEEECCCChhhCEEEEEEEEeC
Confidence 4567889999999999999887776 9999998876321 11111112222 245999999999999999999998
Q ss_pred -CeeEEEEEE
Q psy13371 173 -DVASVYVHV 181 (212)
Q Consensus 173 -~~~~~~~~v 181 (212)
....+.+.|
T Consensus 81 ~G~~~~~~~v 90 (92)
T cd05891 81 YGGETVDVTV 90 (92)
T ss_pred CCceeeEEEE
Confidence 444455544
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=75.29 Aligned_cols=79 Identities=22% Similarity=0.371 Sum_probs=54.5
Q ss_pred CcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC---CeeEEE
Q psy13371 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVY 178 (212)
Q Consensus 102 ~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~---~~~~~~ 178 (212)
+.+.|.|.+.+++.+...+.|+++++++..... ..++... .+....+.|.|.+++..|+|.|+|.|+|. ...+..
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~-~~~~~~~-~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKD-GDHFERV-GGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCC-CccEEEe-ccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 468999999887777777999999998853321 1222221 11111134999999999999999999997 445555
Q ss_pred EEEe
Q psy13371 179 VHVL 182 (212)
Q Consensus 179 ~~v~ 182 (212)
+.|.
T Consensus 79 L~V~ 82 (85)
T cd05853 79 LIVR 82 (85)
T ss_pred EEEe
Confidence 5543
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=77.28 Aligned_cols=75 Identities=24% Similarity=0.370 Sum_probs=52.1
Q ss_pred CeeEeeeCCCCC-ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--CceeE
Q psy13371 1 MLHQRKLKGLLP-TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~ 77 (212)
+.|.|.+.|.|. |.+.|+++++..+... +.|+.+.. ......+|+|.+++.+|+|.|+|.+.|. +..+.
T Consensus 18 v~l~C~v~G~P~~p~i~W~~~~g~~l~~~-------~~r~~v~~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~ 89 (96)
T cd05865 18 KFFLCQVAGEAKDKDISWFSPNGEKLTPN-------QQRISVVR-NDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEA 89 (96)
T ss_pred EEEEEEEeCCCCCCEEEEECCCCcCcccc-------CCeEEEEe-CCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence 368999999995 7999998544222221 22444432 2233568999999999999999999995 44555
Q ss_pred EEEEEE
Q psy13371 78 FVNLNV 83 (212)
Q Consensus 78 ~~~l~v 83 (212)
.+.|.|
T Consensus 90 s~~l~v 95 (96)
T cd05865 90 TVNVKI 95 (96)
T ss_pred EEEEEE
Confidence 555554
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.1e-12 Score=76.62 Aligned_cols=80 Identities=25% Similarity=0.405 Sum_probs=55.5
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEeeC-CCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISYDS-SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
+..+.+..+.+|+.++|.|.+.+.|.|. +.|++. +..+.... ....+....... ....|.|.+++.+|+|.|+
T Consensus 5 i~~~~~~~~~~G~~v~l~C~~~G~P~p~--i~W~k~~~g~~~~~~~~~~~~r~~v~~~~--~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 5 IIQLKNETTVENGAATLSCKAEGEPIPE--ITWKRASDGHTFSEGDKSPDGRIEVKGQH--GESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred EEeeccEEEcCCCcEEEEEecccCCCCe--EEEEECCCCceeccCCcCcCceEEEeecC--CeeEEEEeeCCcCCCEEEE
Confidence 3445678899999999999999988777 999985 33332111 111222222211 1245999999999999999
Q ss_pred EEcccCC
Q psy13371 167 CSPSNAD 173 (212)
Q Consensus 167 C~~~n~~ 173 (212)
|.|.|..
T Consensus 81 C~A~N~~ 87 (98)
T cd05870 81 CEAASRI 87 (98)
T ss_pred EEEeccC
Confidence 9999983
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=75.81 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=50.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.... ..+++.. .+..|.|.+++.+|+|.|.|.+.|. +.....+
T Consensus 4 v~l~C~~~G~P~p~i~W~k~g~-~i~~~~-----~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (76)
T cd05867 4 ARLDCQVEGIPTPNITWSINGA-PIEGTD-----PDPRRHV------SSGALILTDVQPSDTAVYQCEARNRHGNLLANA 71 (76)
T ss_pred EEEEEEeeEeCCCeEEEEECCE-ECCCCC-----CCceEEe------eCCEEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence 4699999999999999999773 222111 0123333 2347999999999999999999995 5555556
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd05867 72 HVHV 75 (76)
T ss_pred EEEE
Confidence 6554
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-12 Score=74.84 Aligned_cols=63 Identities=22% Similarity=0.425 Sum_probs=48.1
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.|.|. +.|++++.++...... .+.. ... ..|.|.+++.+|+|.|+|.|.|.
T Consensus 1 G~~v~l~C~~~G~P~p~--i~W~k~g~~i~~~~~~-~~~~-~~~-----~~L~I~~~~~~D~G~Y~C~a~N~ 63 (76)
T cd05867 1 GETARLDCQVEGIPTPN--ITWSINGAPIEGTDPD-PRRH-VSS-----GALILTDVQPSDTAVYQCEARNR 63 (76)
T ss_pred CCeEEEEEEeeEeCCCe--EEEEECCEECCCCCCC-ceEE-eeC-----CEEEECCCChhhCEEEEEEEECC
Confidence 67899999999998776 9999999877432111 1111 122 24999999999999999999997
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=79.86 Aligned_cols=79 Identities=15% Similarity=0.286 Sum_probs=51.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.......... ..... .......|+|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 21 ~~l~~~v~g~P~P~v~W~kdg~--~l~~~~~~~~~~-~~~~~--~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~ 95 (101)
T cd05859 21 KEFVVEVEAYPPPQIRWLKDNR--TLIENLTEITTS-EHNVQ--ETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTF 95 (101)
T ss_pred EEEEEEEEEeCCCceEEEECCE--ECcCCcceEEec-ccccc--ceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEE
Confidence 3689999999999999999883 322211100000 00000 0112357999999999999999999996 4566666
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 96 ~l~V~ 100 (101)
T cd05859 96 ALQIQ 100 (101)
T ss_pred EEEEE
Confidence 66654
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.4e-12 Score=76.80 Aligned_cols=78 Identities=27% Similarity=0.409 Sum_probs=55.8
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC-CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS-RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
..+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+..... ...+..... ....+.|.|.+++.+|+|.|+|.|
T Consensus 6 ~~~~~~~~~~g~~v~l~C~~~g~p~p~--v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a 81 (96)
T cd05732 6 TYLENQTAVELEQITLTCEAEGDPIPE--ITWRRATRNFSEGDKSLDGRIVVRG--HARVSSLTLKDVQLTDAGRYDCEA 81 (96)
T ss_pred eecCceeEecCCcEEEEEEEeEcCCCc--EEEEECCcccCCCCccccceEEEeC--CccEEEEEECcCCcCcCEEeEEEE
Confidence 344567789999999999999987777 999998865432110 111222211 112356999999999999999999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.|.
T Consensus 82 ~N~ 84 (96)
T cd05732 82 SNR 84 (96)
T ss_pred EeC
Confidence 998
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=74.77 Aligned_cols=63 Identities=24% Similarity=0.461 Sum_probs=48.0
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.|.|. +.|+++++++...... .... .++ ..|.|.+++.+|.|.|+|.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~--i~W~k~g~~i~~~~~~--~~~~-~~~----~~l~i~~v~~~D~G~Y~C~A~N~ 63 (76)
T cd05868 1 GEDGTLICRANGNPKPS--ISWLTNGVPIEIAPTD--PSRK-VDG----DTIIFSKVQERSSAVYQCNASNE 63 (76)
T ss_pred CCCEEEEEEeeEeCCCe--EEEEECCEEccccCCC--ceEE-ecC----CEEEECCCCHhhCEEEEEEEEcC
Confidence 67899999999998887 9999999887432111 1111 122 24889999999999999999998
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-12 Score=72.94 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=43.8
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++|.|.+.+.|.|. +.|+++|.++.... . .+.|.|.++..+|+|.|+|.|.|+
T Consensus 1 ~~l~c~v~g~P~P~--v~W~kdg~~l~~~~----------~----~~~L~i~~v~~~D~G~YtC~a~N~ 53 (67)
T cd05863 1 VKLPVKVAAYPPPE--FQWYKDGKLISGKH----------S----QHSLQIKDVTEASAGTYTLVLWNS 53 (67)
T ss_pred CEEEEEEEEeCCCE--EEEEECCEECcccC----------C----cCEEEECCCCHHHCEEEEEEEEEC
Confidence 47899999998887 99999998874110 0 135999999999999999999998
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.8e-12 Score=76.32 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=52.4
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC-CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS-RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.......|+.++|.|.+.+.|.|. +.|++++..+..... ...+....... ..+.|.|.++..+|+|.|+|.|.|.
T Consensus 10 ~~~~~~~g~~v~l~C~~~G~P~P~--v~W~~~~~~~~~~~~~~~~~~~v~~~~--~~~~L~I~~v~~~D~G~Y~C~A~N~ 85 (97)
T cd05869 10 NQTAMELEEQITLTCEASGDPIPS--ITWRTSTRNISSEEKTLDGHIVVRSHA--RVSSLTLKYIQYTDAGEYLCTASNT 85 (97)
T ss_pred CceEEEcCCCEEEEEEeeEeCCCE--EEEEECCccccCCccccCccEEEEcCc--cEEEEEEecCccCcCEEEEEEEecC
Confidence 333455589999999999987776 999998876532111 11112222211 2256999999999999999999998
Q ss_pred C
Q psy13371 173 D 173 (212)
Q Consensus 173 ~ 173 (212)
.
T Consensus 86 ~ 86 (97)
T cd05869 86 I 86 (97)
T ss_pred C
Confidence 3
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-12 Score=73.88 Aligned_cols=66 Identities=29% Similarity=0.510 Sum_probs=51.5
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....|+...+.+|+.++|.|.+.+.|.+. .+.|++++..+... . ..|.|.++ .+|+|.|+|.
T Consensus 3 v~~~P~~~~v~~G~~V~L~C~~~~~p~~~-~~~W~kng~~l~~~-----------~-----~~l~i~~~-~~dsG~Y~C~ 64 (78)
T cd05752 3 VSLDPPWTTIFQGEKVTLTCNGFNSPEQN-STQWYHNGKLLETT-----------T-----NSYRIRAA-NNDSGEYRCQ 64 (78)
T ss_pred EEeCCCCeEeeCCCCEEEEEeCCCCCCCc-cEEEEECCEEeecc-----------C-----CeEEEeec-ccCCEEeEEE
Confidence 34556777899999999999998775432 38999999876211 1 23889888 9999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
|.|.
T Consensus 65 a~~~ 68 (78)
T cd05752 65 TQGS 68 (78)
T ss_pred CCCC
Confidence 9886
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=75.06 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=49.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. . +.. .+.... .....|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~-~-~~~--------~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 66 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGG-E-LPA--------DRTKFE----NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTI 66 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCe-E-CCC--------CceeEe----cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEE
Confidence 4799999999999999999873 2 211 111111 13447999999999999999999996 4455555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 67 ~l~V 70 (71)
T cd05731 67 SVTV 70 (71)
T ss_pred EEEE
Confidence 5544
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-12 Score=75.79 Aligned_cols=71 Identities=27% Similarity=0.450 Sum_probs=55.4
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
..|.+..+..|+.+.|.|.+.+.|.|. +.|++++..+.. ..+.. ...+ .|.|.++..+|+|.|+|.|.
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~--v~W~k~g~~~~~----~~~~~-~~~~-----~L~i~~~~~~D~G~Y~C~a~ 71 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPA--YRWLKNGQPLAS----ENRIE-VEAG-----DLRITKLSLSDSGMYQCVAE 71 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCE--EEEEECCEECCC----CCeEE-EeCC-----EEEEeeCCHHHCEEEEEEEE
Confidence 345667889999999999999988776 999999987632 11222 2222 49999999999999999999
Q ss_pred cCC
Q psy13371 171 NAD 173 (212)
Q Consensus 171 n~~ 173 (212)
|+.
T Consensus 72 N~~ 74 (85)
T cd05728 72 NKH 74 (85)
T ss_pred CCC
Confidence 983
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-12 Score=77.72 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=52.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++++. .+..... ..++|+.+. .......|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 20 v~l~C~~~G~P~P~v~W~~~~~-~~~~~~~---~~~~~~~v~--~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 93 (97)
T cd05869 20 ITLTCEASGDPIPSITWRTSTR-NISSEEK---TLDGHIVVR--SHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSM 93 (97)
T ss_pred EEEEEEeeEeCCCEEEEEECCc-cccCCcc---ccCccEEEE--cCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEE
Confidence 3689999999999999999763 2211110 123455443 2233468999999999999999999996 5555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 94 ~l~ 96 (97)
T cd05869 94 YLE 96 (97)
T ss_pred EEE
Confidence 554
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-12 Score=75.27 Aligned_cols=61 Identities=23% Similarity=0.370 Sum_probs=47.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|++++. .+. .+.|+.+. ...+...|+|.+++.+|+|.|+|.+.|.
T Consensus 4 v~l~C~~~g~P~p~v~W~~~~~-~~~--------~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 64 (78)
T cd05743 4 VEFTCVATGVPTPIINWRLNWG-HVP--------DSARVSIT--SEGGYGTLTIRDVKESDQGAYTCEAINT 64 (78)
T ss_pred EEEEEEEEEecCCEEEEEECCe-ECC--------CCCCEEEE--ECCCEEEEEECCCChHHCEEEEEEEEec
Confidence 3689999999999999998763 221 13455554 2335678999999999999999999985
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=74.11 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=54.5
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+.... ...... ....+.|.|.++..+|.|.|+|.|.|.
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~--v~W~~~g~~~~~~~----~~~~~~--~~~~~~L~I~~v~~~D~g~Y~C~A~N~ 78 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPK--VEWIIAGLIVIQTR----TDTLET--TVDIYNLQLSNITSETQTTVTCTAENP 78 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCe--EEEEECCEEccCCc----cEEEEe--cCCEEEEEEecCCcccCEEEEEEEECC
Confidence 4455688999999999999988777 99999998763211 111111 112346999999999999999999998
Q ss_pred C
Q psy13371 173 D 173 (212)
Q Consensus 173 ~ 173 (212)
.
T Consensus 79 ~ 79 (90)
T cd04972 79 V 79 (90)
T ss_pred C
Confidence 4
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-12 Score=73.77 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=47.8
Q ss_pred eEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEE--E-eeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 3 HQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSA--I-HRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 3 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~--~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
++|.+.|.|.|.|.|+|++ ..+..+ .++.. . .........|.|.++..+|+|.|+|.+.|. +.....
T Consensus 3 i~~~v~G~P~Pti~W~kng--~~l~~~-------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~ 73 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEG--AILNES-------EYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN 73 (79)
T ss_pred EEEEEeEeCCCceEEEECC--EECCCC-------cceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence 7899999999999999988 333321 12111 0 011223468999999999999999999996 444444
Q ss_pred EE
Q psy13371 79 VN 80 (212)
Q Consensus 79 ~~ 80 (212)
+.
T Consensus 74 ~~ 75 (79)
T cd05855 74 VS 75 (79)
T ss_pred EE
Confidence 43
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.4e-12 Score=76.15 Aligned_cols=78 Identities=24% Similarity=0.445 Sum_probs=57.1
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC-
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD- 173 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~- 173 (212)
+..+..|+.+.|.|.+.+.|.|. +.|++++..+... .........+ +.|.|.++..+|.|.|+|.|.|..
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~--v~W~k~g~~~~~~---~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPT--MTWTKDGEPIESG---EEKYSFNEDG----SEMTILDVDKLDEAEYTCIAENKAG 82 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCE--EEEEECCEECcCC---CCEEEEeCCC----CEEEECCCChhhCEEEEEEEEcCCC
Confidence 45688999999999999987777 9999999876422 1122222222 359999999999999999999983
Q ss_pred --eeEEEEEE
Q psy13371 174 --VASVYVHV 181 (212)
Q Consensus 174 --~~~~~~~v 181 (212)
..++.+.|
T Consensus 83 ~~~~~~~L~V 92 (95)
T cd05730 83 EQEAEIHLKV 92 (95)
T ss_pred eEEEEEEEEE
Confidence 34444444
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.8e-12 Score=74.33 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=47.3
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEE-ee----CCCCeEEEEEcccCCCCCEEEEEEecCC-Cce
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAI-HR----REGDEWTLHIKWAQKRDAGVYECQLSTQ-PVR 75 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~-~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 75 (212)
.|.|.+.|.|.|.++|+|++. .+.+ . .+.... .. .....+.|+|.+++.+|+|.|+|.+.|. +..
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~-~i~~-~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~ 72 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGA-VLNE-S-------DYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD 72 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCE-ECcC-C-------CceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence 478999999999999999773 2222 1 111111 00 1223567999999999999999999996 434
Q ss_pred eEEE
Q psy13371 76 SFFV 79 (212)
Q Consensus 76 ~~~~ 79 (212)
+..+
T Consensus 73 ~~~~ 76 (81)
T cd04971 73 SKSI 76 (81)
T ss_pred eeEE
Confidence 4433
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-12 Score=77.87 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=52.2
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeC---CCCeEEEEEcccCCCCCEEEEEEecCC-Cce
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR---EGDEWTLHIKWAQKRDAGVYECQLSTQ-PVR 75 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 75 (212)
+.|.|.+.| .|.|.+.|+|++. .+... .++...... ......|+|..++.+|+|.|+|.+.|. +..
T Consensus 21 v~L~c~v~g~~P~p~v~W~Kdg~--~i~~~-------~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 21 LNLVVEVEAYPPPPHINWTYDNR--TLTNK-------LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred EEEEEEEEecCCCCccEEEeCCe--eCCCC-------cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 479999999 8999999999873 33211 111111100 012357999999999999999999996 556
Q ss_pred eEEEEEEEe
Q psy13371 76 SFFVNLNVV 84 (212)
Q Consensus 76 ~~~~~l~v~ 84 (212)
+..+.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 666666664
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-12 Score=73.40 Aligned_cols=65 Identities=29% Similarity=0.574 Sum_probs=47.6
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
+.|.|.+.+.|.|. +.|+++++.+.... .+.....++. ...+|.|.++..+|+|.|+|.|.|..+
T Consensus 1 v~l~C~v~G~P~P~--i~W~k~~~~i~~~~---~r~~~~~~~~-g~~~L~I~~~~~~D~G~Y~C~A~N~~G 65 (75)
T cd05892 1 VKLECQISAIPPPK--IFWKRNNEMVQYNT---DRISLYQDNS-GRVTLLIKNVNKKDAGWYTVSAVNEAG 65 (75)
T ss_pred CEEEEEEEecCCCe--EEEEECCEECcCCC---CeEEEEEcCC-CcEEEEECCCChhhCEEEEEEEEcCcC
Confidence 47999999998887 99999998874221 2333322211 113599999999999999999999843
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-12 Score=72.24 Aligned_cols=60 Identities=18% Similarity=0.397 Sum_probs=45.7
Q ss_pred cEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
++.|.|.+.|.|.|. +.|++++..+.. ........++. |.|.++..+|+|.|+|.|.|..
T Consensus 1 ~v~l~C~~~G~P~p~--v~W~k~g~~~~~----~~~~~~~~~~~-----l~i~~v~~~D~G~Y~C~A~N~~ 60 (71)
T cd05723 1 DVIFECEVTGKPTPT--VKWVKNGDMVIP----SDYFKIVKEHN-----LQVLGLVKSDEGFYQCIAENDV 60 (71)
T ss_pred CEEEEEEEEEeCCCE--EEEEECCeECCC----CCCEEEEecCC-----EEEEcCCcccCEEEEEEEEcCC
Confidence 478999999998777 999999987632 11222223333 7888999999999999999983
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=73.62 Aligned_cols=69 Identities=26% Similarity=0.508 Sum_probs=48.8
Q ss_pred CcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 102 ~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.+.|.|.+.+.|.|...+.|++++..+............... ...+.|.|.+++..|+|.|+|.|.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~n~ 69 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGK--DSNGDLMIRNAQLKHAGKYTCTAQTV 69 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecc--cccceEEEccCCHHhCeeeEEEEecC
Confidence 4689999999998886568999999887543221111011100 01235999999999999999999997
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-12 Score=74.00 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=48.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+++++..+.. ..++... .+.+|.|.++..+|+|.|+|.+.|. +..+..+
T Consensus 4 ~~l~C~~~g~P~p~v~W~~~~~~~~~~--------~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05764 4 ATLRCKARGDPEPAIHWISPDGKLISN--------SSRTLVY-----DNGTLDILITTVKDTGSFTCIASNAAGEATATV 70 (74)
T ss_pred EEEEEEccCcCCCEEEEEeCCCEEecC--------CCeEEEe-----cCCEEEEEECChhhCEEEEEEEECCCCeEEEEE
Confidence 368999999999999999865422221 1233222 2347999999999999999999996 4445555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 71 ~l~ 73 (74)
T cd05764 71 ELH 73 (74)
T ss_pred EEE
Confidence 443
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-12 Score=75.99 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=50.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.++.. .+..|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 19 v~l~C~~~G~P~P~v~W~k~~~--~~~~-------~~~~~~------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 83 (88)
T cd05851 19 VTLECFALGNPVPVIRWRKILE--PMPA-------TAEISM------SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQA 83 (88)
T ss_pred EEEEEEecccCCCEEEEEECCc--CCCC-------CCEEec------CCCEEEECcCChhhCEEEEEEEEcCCCceEEEE
Confidence 3699999999999999999873 2211 112211 2347999999999999999999996 5566666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 84 ~l~V 87 (88)
T cd05851 84 RVYV 87 (88)
T ss_pred EEEE
Confidence 6655
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-12 Score=73.23 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=43.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.++|.|.|.+.|+|++. .+... ..++.. ...+|.|.++..+|+|.|+|.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~--~l~~~------~~~~~~------~~~~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGL--PAAEK------CSRYHV------DGYSLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCE--ECCCC------CcEEEe------CCCEEEECcCCHHHCEEEEEEEEcc
Confidence 3689999999999999999873 22211 122222 1237999999999999999999985
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.7e-12 Score=74.35 Aligned_cols=80 Identities=18% Similarity=0.237 Sum_probs=57.1
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+...| .+.+.|++++. .+.... .+.||.... ......+|.|.+++.+|+|.|+|.+.+. ...+.
T Consensus 3 ~~l~C~v~~d~~l~~~~~W~~dg~--~i~~~~----~~~~~~~~~-~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a 75 (85)
T cd05853 3 IVLPCQVSHDHSLDIVFTWSFNGH--LIDFQK----DGDHFERVG-GQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSA 75 (85)
T ss_pred EEEEEEeccCCCCCcEEEEEECCE--ECcccC----CCccEEEec-cCCCCCcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence 36899998854 78999999883 332110 123554431 1124458999999999999999999996 56778
Q ss_pred EEEEEEeccc
Q psy13371 78 FVNLNVVVPT 87 (212)
Q Consensus 78 ~~~l~v~~~~ 87 (212)
.+.|.|..||
T Consensus 76 ~a~L~V~~pP 85 (85)
T cd05853 76 AADLIVRGPP 85 (85)
T ss_pred EEEEEEecCC
Confidence 8888888765
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-12 Score=75.77 Aligned_cols=71 Identities=25% Similarity=0.349 Sum_probs=51.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc-eeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV-RSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~-~~~~ 78 (212)
+.|.|.+.|.|. .+.|+++++..+.. +.|+.+. .......|+|.++..+|+|.|+|.+.|. +. ....
T Consensus 18 v~l~C~~~G~P~-~v~W~k~~g~~~~~--------~~r~~~~--~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 86 (92)
T cd05866 18 KFFTCTAIGEPE-SIDWYNPQGEKIVS--------SQRVVVQ--KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 86 (92)
T ss_pred EEEEEEEEEeCC-eEEEEeCCCeEecC--------CCCEEEE--eCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEE
Confidence 368999999998 89999865433322 3466554 2334568999999999999999999986 32 2444
Q ss_pred EEEE
Q psy13371 79 VNLN 82 (212)
Q Consensus 79 ~~l~ 82 (212)
+.|.
T Consensus 87 i~l~ 90 (92)
T cd05866 87 VVLE 90 (92)
T ss_pred EEEE
Confidence 4444
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-12 Score=73.68 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=50.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|++. .+ .... ..+.... ....|.|.+++.+|+|.|.|.+.|. +.....+
T Consensus 4 ~~l~C~a~G~P~P~i~W~k~g~-~i-~~~~-----~~~~~~~-----~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 71 (76)
T cd05868 4 GTLICRANGNPKPSISWLTNGV-PI-EIAP-----TDPSRKV-----DGDTIIFSKVQERSSAVYQCNASNEYGYLLANA 71 (76)
T ss_pred EEEEEEeeEeCCCeEEEEECCE-Ec-cccC-----CCceEEe-----cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEE
Confidence 3689999999999999999763 22 2110 0011111 1237889999999999999999996 5566666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|+|
T Consensus 72 ~l~v 75 (76)
T cd05868 72 FVNV 75 (76)
T ss_pred EEEe
Confidence 6665
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.5e-12 Score=72.90 Aligned_cols=61 Identities=30% Similarity=0.536 Sum_probs=47.7
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.|.|. +.|++++..+... .+......+ .|.|.++..+|+|.|+|.|.|.
T Consensus 1 G~~v~L~C~~~g~P~p~--v~W~k~~~~~~~~----~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~a~N~ 61 (73)
T cd04969 1 GGDVIIECKPKAAPKPT--ISWSKGTELLTNS----SRICIWPDG-----SLEILNVTKSDEGKYTCFAENF 61 (73)
T ss_pred CCeEEEEEeeeEcCCCE--EEEEECCEEcccC----CCEEECCCC-----eEEEccCChhHCEEEEEEEECC
Confidence 67899999999887666 9999999876321 122233333 3999999999999999999998
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-12 Score=72.95 Aligned_cols=65 Identities=28% Similarity=0.478 Sum_probs=47.4
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
+.|.|.+.|.|.|. +.|++++..+... ..+......+. ....|.|.++..+|+|.|+|.|.|..+
T Consensus 1 v~l~C~v~G~P~P~--v~W~k~~~~l~~~---~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G 65 (75)
T cd05893 1 VRLECRVSGVPHPQ--IFWKKENESLTHN---TDRVSMHQDNC-GYICLLIQGATKEDAGWYTVSAKNEAG 65 (75)
T ss_pred CEEEEEEeEecCCE--EEEEECCEECCCC---CCeEEEEEcCC-CEEEEEECCCCHHHCEEEEEEEEcCCC
Confidence 47899999998887 9999999877421 12233322221 123599999999999999999999843
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.3e-12 Score=75.87 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=51.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+. .+.|+.+. .......|.|.+++.+|+|.|.|.+.|. +.....+
T Consensus 21 ~~L~C~~~g~P~p~v~W~k~g~--~l~-------~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 89 (92)
T cd05747 21 ARFSCDVDGEPAPTVTWMREGQ--IIV-------SSQRHQIT--STEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQF 89 (92)
T ss_pred EEEEEEEeecCCCEEEEEECCE--ECC-------CCCcEEEE--EcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEE
Confidence 3699999999999999999863 221 13466654 2334578999999999999999999996 4444444
Q ss_pred E
Q psy13371 80 N 80 (212)
Q Consensus 80 ~ 80 (212)
.
T Consensus 90 ~ 90 (92)
T cd05747 90 T 90 (92)
T ss_pred E
Confidence 3
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=73.10 Aligned_cols=74 Identities=28% Similarity=0.489 Sum_probs=53.5
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc-CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH-DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.+.+..+..|+.+.|.|.+.|.|. . +.|+++ +..+.. ..+......+. ...|.|.++..+|+|.|+|.|.
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~--v~W~k~~g~~~~~----~~r~~~~~~g~--~~~L~I~~v~~~D~G~Y~C~A~ 76 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-S--IDWYNPQGEKIVS----SQRVVVQKEGV--RSRLTIYNANIEDAGIYRCQAT 76 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-e--EEEEeCCCeEecC----CCCEEEEeCCC--eeEEEEecCChHHCEEEEEEEE
Confidence 345667899999999999998764 4 999975 555421 12233333332 1359999999999999999999
Q ss_pred cCCe
Q psy13371 171 NADV 174 (212)
Q Consensus 171 n~~~ 174 (212)
|..+
T Consensus 77 N~~G 80 (92)
T cd05866 77 DAKG 80 (92)
T ss_pred cCCC
Confidence 9843
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-12 Score=73.63 Aligned_cols=63 Identities=24% Similarity=0.406 Sum_probs=47.8
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.|.|. +.|++++..+...... ....... ..|.|.+++.+|+|.|+|.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~--i~W~~~g~~~~~~~~~--~~~~~~~-----~~L~i~~v~~~D~G~Y~C~A~N~ 63 (76)
T cd04978 1 GETGRLDCEAEGIPQPT--ITWRLNGVPIEELPPD--PRRRVDG-----GTLILSNVQPNDTAVYQCNASNV 63 (76)
T ss_pred CCeEEEEEEceeeCCCE--EEEEECCEECCCCCCc--ceEEccC-----CEEEECCCChhhCEEEEEEEEcc
Confidence 67899999999988777 9999999877432211 1111112 24999999999999999999997
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-12 Score=75.46 Aligned_cols=71 Identities=18% Similarity=0.386 Sum_probs=51.3
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+.+|+.+.|.|.+.+.|.|. +.|++++..+....... ..... .. ...|.|.++..+|+|.|+|.+.|..
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~--i~W~k~g~~l~~~~~~~-~~~~~-~~---~~~l~i~~~~~~D~G~Y~C~a~N~~ 74 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPT--MRWLKNGKEFKQEHRIG-GYKVR-NQ---HWSLIMESVVPSDKGNYTCVVENEY 74 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCE--EEEEECCEECCCCCcee-eeEEe-CC---ceEEEEccCCcccCEEEEEEEEeCC
Confidence 3477899999999999887665 99999998774321111 11111 11 1358999999999999999999983
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.2e-12 Score=76.37 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=52.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++++. .+..... ..++|+.+. .......|+|.+++.+|+|.|.|.+.|. +..+..+
T Consensus 19 v~l~C~~~g~p~p~v~W~~~~~--~~~~~~~--~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~ 92 (96)
T cd05732 19 ITLTCEAEGDPIPEITWRRATR--NFSEGDK--SLDGRIVVR--GHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSM 92 (96)
T ss_pred EEEEEEEeEcCCCcEEEEECCc--ccCCCCc--cccceEEEe--CCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEE
Confidence 3689999999999999999762 2211100 113455543 2334568999999999999999999996 4455555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 93 ~l~ 95 (96)
T cd05732 93 YLE 95 (96)
T ss_pred EEe
Confidence 544
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-11 Score=73.05 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=59.4
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEee--cCceEEEEEEEeeeeecC-CEE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE--KGEVTTSYLLIQQAELKD-SGK 164 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d-~g~ 164 (212)
+.+.......+.+|+.+.|.|.+.+.|.|. .+.|.+++..+.... ..++.+.+ .+....+.|.|.++...| .|.
T Consensus 3 P~i~~~~s~~~~~G~~~~L~C~~~s~P~P~-~i~W~w~~~~i~~~~--~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 3 PIISSEQVQYAVRGERGKVKCFIGSTPPPD-RIAWAWKENVLESGT--SERYTVERTSTGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CEEecCceEEEeCCCcEEEEEEEccCCCCc-EEEEEEccccccCCC--CCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence 445556677899999999999998887665 578988877553221 12333322 223345679999998766 789
Q ss_pred EEEEcccCCe
Q psy13371 165 YSCSPSNADV 174 (212)
Q Consensus 165 y~C~~~n~~~ 174 (212)
|.|.|.|..+
T Consensus 80 Y~C~a~N~~G 89 (98)
T cd05898 80 YNCTAWNSFG 89 (98)
T ss_pred EEEEEEeCCc
Confidence 9999999843
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=73.15 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=61.6
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNL 81 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l 81 (212)
.|.|.+++.+...+.|++.+.. +..........++||.+.. ....+.+|+|.+++.+|+|.|+|.+...+..+....+
T Consensus 16 ~L~C~v~~~~~~~v~w~~~~~~-~i~~~~~~~~~d~Rf~~~~-~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~ 93 (95)
T cd05881 16 IISCRVKNNDDSVIQLLNPNRQ-TIYFRDVRPLKDSRFQLVN-FSSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTI 93 (95)
T ss_pred EEEEEEccCCccEEEEEecCCc-EEEecCccccCCcCEEEEe-CCCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEE
Confidence 6899999998889999987753 3333333444688999884 4567889999999999999999999987766666555
Q ss_pred E
Q psy13371 82 N 82 (212)
Q Consensus 82 ~ 82 (212)
.
T Consensus 94 ~ 94 (95)
T cd05881 94 T 94 (95)
T ss_pred E
Confidence 4
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.5e-12 Score=74.26 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=49.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce-eeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH-ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.|.|.|.+.|+|+.... ....... ....++... ....|.|.+++.+|+|.|.|.+.|. +.....
T Consensus 4 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 4 ASFHCDVTGRPPPEITWEKQVHGKENLIMRPN--HVRGNVVVT-----NIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred EEEEeeccccCCCcEEEEecCCCCcceeecCC--cccCCEEEc-----cccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence 469999999999999999974211 1100000 001122222 3458999999999999999999996 455555
Q ss_pred EEEE
Q psy13371 79 VNLN 82 (212)
Q Consensus 79 ~~l~ 82 (212)
+.|.
T Consensus 77 ~~l~ 80 (81)
T cd05765 77 FPLS 80 (81)
T ss_pred EEEe
Confidence 5554
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=74.18 Aligned_cols=72 Identities=13% Similarity=0.297 Sum_probs=50.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. ... ..++.. ......|.|.++..+|+|.|+|.+.|. +.....+
T Consensus 12 ~~L~C~~~g~P~p~i~W~k~g~-~l~~-~~~----~~~~~~----~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05857 12 VKFRCPAAGNPTPTMRWLKNGK-EFKQ-EHR----IGGYKV----RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 81 (85)
T ss_pred EEEEEEcCCCCCCEEEEEECCE-ECCC-CCc----eeeeEE----eCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEE
Confidence 3689999999999999999873 2221 110 001111 124557999999999999999999996 5555555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05857 82 HLD 84 (85)
T ss_pred EEE
Confidence 554
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=74.66 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=56.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.+.+.+.|++.++..+ .........++|+.+.. ....+.+|+|.+++.+|+|.|+|.+......+..+.
T Consensus 15 v~L~C~~~~~~~~~v~W~~p~~~~~-~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~ 92 (95)
T cd05717 15 ATLKCRVKNNDNSSLQWSNPNQQTL-YFNDKRALRDNRIQLVN-FSANELSISISNVSLSDEGRYTCSLYTMPVQTAKAT 92 (95)
T ss_pred EEEEEEECCCCCceEEEeCCCCcEE-EeccccccccCcEEEEc-CCCCeeEEEEccCCcccCEEEEEEEecCCCceEEEE
Confidence 3689999999999999997554222 21211112356888752 344567899999999999999999987654555555
Q ss_pred EEE
Q psy13371 81 LNV 83 (212)
Q Consensus 81 l~v 83 (212)
|.|
T Consensus 93 ~~v 95 (95)
T cd05717 93 VTV 95 (95)
T ss_pred EEC
Confidence 543
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.33 E-value=9e-12 Score=75.38 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=50.3
Q ss_pred CeeEeeeCCCCCceEEEEeeC---cceeeeecceeeecCCceEEEee-----CCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHR---DIHILTVGSYTYTSDQRFSAIHR-----REGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~---~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.|.|+|.. +..+.+.+. .+...... .......|+|.+++.+|+|.|+|.+.|.
T Consensus 4 v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd05858 4 VEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGL------PYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS 77 (90)
T ss_pred EEEEEEEecCCCCEEEEEEecccCCcEeCCCCC------eeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence 369999999999999999853 111111110 01111100 1122357999999999999999999986
Q ss_pred -CceeEEEEEEE
Q psy13371 73 -PVRSFFVNLNV 83 (212)
Q Consensus 73 -~~~~~~~~l~v 83 (212)
+.....+.|.|
T Consensus 78 ~G~~~~~a~L~V 89 (90)
T cd05858 78 IGISHHSAWLTV 89 (90)
T ss_pred CCcccceEEEEE
Confidence 55566666665
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.9e-12 Score=72.97 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=43.5
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++|.|.+.+.|.|. +.|++++........ ..+......+ ..|.|.++..+|+|.|+|.|.|.
T Consensus 1 a~l~C~~~G~P~P~--v~W~k~~~~~~~~~~-~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~A~N~ 62 (75)
T cd05763 1 ARLECAATGHPTPQ--IAWQKDGGTDFPAAR-ERRMHVMPED----DVFFIVDVKIEDTGVYSCTAQNT 62 (75)
T ss_pred CEeEeecccccCCE--EEEEeCCCccCCccc-ccceEEecCC----CEEEEeeCCcccCEEEEEEEEcC
Confidence 47899999988787 999998864221111 1122222222 24999999999999999999997
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=74.49 Aligned_cols=72 Identities=31% Similarity=0.477 Sum_probs=54.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+++.|.|.+.|++++ ..+.. +.++.... ......|.|.+++.+|+|.|+|.+.+. +..+..+
T Consensus 18 ~~l~c~~~~~p~~~v~W~~~~--~~l~~-------~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~ 86 (90)
T PF07679_consen 18 VTLECEVSGNPPPTVTWYKNG--RPLTS-------SQRYQIES--DGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV 86 (90)
T ss_dssp EEEEEEEEESSSSEEEEEETT--EEEES-------SSSEEEEE--ETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEeCCCCcccccccc--cceee-------eeeeeeec--ccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence 368999999999999999986 33321 45666653 337889999999999999999999986 3444555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 87 ~l~V 90 (90)
T PF07679_consen 87 NLTV 90 (90)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=74.48 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=50.0
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.+.+.|.|.+.|+|++. .+.. ++++.... ......+|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus 20 ~L~C~v~g~P~p~i~W~k~~~-~~~~--------~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 20 NLTCTVFGNPDPEVIWFKNDQ-DIEL--------SEHYSVKL-EQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred EEEEEEEEeCCCeEEEEECCE-ECCC--------CCCEEEEE-cCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 699999999999999999873 2221 33454432 1223457999999999999999999985 34444444
Q ss_pred E
Q psy13371 81 L 81 (212)
Q Consensus 81 l 81 (212)
|
T Consensus 90 v 90 (92)
T cd05891 90 V 90 (92)
T ss_pred E
Confidence 3
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-12 Score=73.58 Aligned_cols=71 Identities=20% Similarity=0.174 Sum_probs=50.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++++. .+..... ... .......|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 4 ~~l~C~~~g~P~p~i~W~~~g~-~~~~~~~-------~~~----~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 71 (76)
T cd04978 4 GRLDCEAEGIPQPTITWRLNGV-PIEELPP-------DPR----RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANA 71 (76)
T ss_pred EEEEEEceeeCCCEEEEEECCE-ECCCCCC-------cce----EEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeE
Confidence 3689999999999999998763 2221111 000 1113458999999999999999999996 5556666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd04978 72 FVHV 75 (76)
T ss_pred EEEE
Confidence 6655
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-11 Score=75.31 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=49.1
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEE--eecCceEEEEEEEeeee-ecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI--TEKGEVTTSYLLIQQAE-LKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~ 172 (212)
.|..+.|.|.+.+.|.|. +.|++++..+.... .+... ...+....+.|.|.++. .+|.|.|+|.|.|.
T Consensus 22 ~g~~v~L~C~a~G~P~p~--i~W~k~g~~l~~~~---~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~ 92 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQ--FRWAKNGVPLDLGN---PRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNS 92 (109)
T ss_pred CCCEEEEEEECcccCCCE--EEEEECCEECCCCC---CeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeC
Confidence 467899999999887665 99999998774221 12211 12222233569999987 58999999999998
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=70.87 Aligned_cols=64 Identities=14% Similarity=0.274 Sum_probs=45.8
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
|.|.|.+.| .|.|.+.|+|++. .+...... ..+.+. .......|+|.++..+|+|.|+|.+.|.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~-~l~~~~~~-----~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 65 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGK-ELNRKNKP-----RNIKIR--NKKKNSELQINKAKLADSGEYTCVVENI 65 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCe-eccccCCc-----ceEEEE--ecCceEEEEEccCCcccCeEEEEEEEEc
Confidence 579999999 8999999999763 22211100 011121 2334568999999999999999999986
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=73.73 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=50.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++++. .+.. . .+.... .......|.|.+++.+|.|.|.|.+.|. +.....+
T Consensus 18 v~l~C~~~G~P~p~v~W~~~g~-~~~~-~-------~~~~~~--~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 18 ATIRCTAEGSPLPKVEWIIAGL-IVIQ-T-------RTDTLE--TTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred EEEEEEEEEcCCCeEEEEECCE-EccC-C-------ccEEEE--ecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 3689999999999999999874 2211 1 111111 2234568999999999999999999996 4555565
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|+
T Consensus 87 ~L~ 89 (90)
T cd04972 87 QVT 89 (90)
T ss_pred EEe
Confidence 554
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=71.59 Aligned_cols=66 Identities=27% Similarity=0.439 Sum_probs=49.0
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
|+.+.|.|.+.+.|.|. +.|++++..+.. ..+......+. ...|.|.++..+|.|.|+|.|.|..+
T Consensus 1 G~~v~l~C~~~g~P~p~--v~W~~~~~~~~~----~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G 66 (78)
T cd05743 1 GETVEFTCVATGVPTPI--INWRLNWGHVPD----SARVSITSEGG--YGTLTIRDVKESDQGAYTCEAINTRG 66 (78)
T ss_pred CCEEEEEEEEEEecCCE--EEEEECCeECCC----CCCEEEEECCC--EEEEEECCCChHHCEEEEEEEEecCC
Confidence 67899999999988776 999998876521 12222222221 24699999999999999999999843
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=74.98 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=52.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+... +.++... .....|+|.+++.+|+|.|+|.+.|. +.....+
T Consensus 21 v~L~C~~~g~P~p~v~W~k~g~--~~~~~------~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 21 VTLACDADGFPEPTMTWTKDGE--PIESG------EEKYSFN----EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred EEEEEeccEeCCCEEEEEECCE--ECcCC------CCEEEEe----CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence 3689999999999999999773 22211 1233332 12346999999999999999999996 5566667
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 89 ~L~V~ 93 (95)
T cd05730 89 HLKVF 93 (95)
T ss_pred EEEEE
Confidence 77664
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=73.51 Aligned_cols=69 Identities=17% Similarity=0.372 Sum_probs=52.6
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.+..+.+|+.++|.|.+.+. .|. +.|++++..+.. .+......+ ..|.|.++..+|+|.|.|.|.|..
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~--i~W~kng~~l~~-----~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~ 78 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATY--IWWVNNGSLLVP-----PRLQLSNDN----RTLTFNNVTRSDTGHYQCEASNEV 78 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCE--EEEEECCEECCC-----CCEEEeCCC----CEEEECcCChhhCEEEEEEEEcCC
Confidence 35578899999999999987 666 999999887631 112222222 249999999999999999999984
Q ss_pred e
Q psy13371 174 V 174 (212)
Q Consensus 174 ~ 174 (212)
+
T Consensus 79 G 79 (91)
T cd05740 79 S 79 (91)
T ss_pred C
Confidence 3
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=70.59 Aligned_cols=64 Identities=30% Similarity=0.592 Sum_probs=46.5
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.+.|.|. +.|++++..+.... .+......+. ...+|.|.++..+|+|.|+|.|.|..
T Consensus 1 v~L~C~v~G~P~P~--v~W~k~~~~i~~~~---~r~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~ 64 (75)
T cd05744 1 VRLECRVSAIPPPQ--IFWKKNNEMLTYNT---DRISLYQDNC-GRICLLIQNANKEDAGWYTVSAVNEA 64 (75)
T ss_pred CEEEEEEeecCCCe--EEEEECCEECCCCC---CcEEEEEcCC-CeEEEEECCCCcccCEEEEEEEEcCC
Confidence 47999999998887 99999998774221 1222221111 11359999999999999999999983
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-11 Score=70.70 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=51.8
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.+.|.|.|.+.|+|++. .+.... ..++... .....|.|.++..+|.|.|+|.+.|. +.....+.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~-~l~~~~------~~~~~~~----~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 70 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGM-DITPKL------SKQLTLI----ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISS 70 (76)
T ss_pred EeEeEeeecCCCEEEEEECCE-ECCCCC------CccEEEe----CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEE
Confidence 589999999999999999773 222211 1234332 12347999999999999999999986 55566666
Q ss_pred EEEe
Q psy13371 81 LNVV 84 (212)
Q Consensus 81 l~v~ 84 (212)
|.|.
T Consensus 71 l~V~ 74 (76)
T cd05736 71 LFVE 74 (76)
T ss_pred EEEE
Confidence 6654
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=70.51 Aligned_cols=59 Identities=31% Similarity=0.651 Sum_probs=45.2
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.+.|.|. +.|++++..+.. ..+......+ .|.|.++..+|+|.|+|.|.|..
T Consensus 1 v~L~C~~~g~P~p~--i~W~k~g~~~~~----~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~ 59 (69)
T cd05746 1 VQIPCSAQGDPEPT--ITWNKDGVQVTE----SGKFHISPEG-----YLAIRDVGVADQGRYECVARNTI 59 (69)
T ss_pred CEeEecceEeCCCE--EEEEECCEECCC----CCCEEECCCC-----EEEECcCChhhCEEEEEEEECCC
Confidence 47999999998777 999999877631 1222222232 49999999999999999999983
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=74.14 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=49.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+. .+.++... +..|.|.++..+|+|.|+|.+.|. +.....+
T Consensus 17 ~~l~C~~~g~p~p~v~W~k~g~--~~~-------~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05728 17 LRWECKASGNPRPAYRWLKNGQ--PLA-------SENRIEVE------AGDLRITKLSLSDSGMYQCVAENKHGTIYASA 81 (85)
T ss_pred EEEEEEeeEeCCCEEEEEECCE--ECC-------CCCeEEEe------CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence 3689999999999999999773 222 12344432 237999999999999999999996 4455555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05728 82 ELA 84 (85)
T ss_pred EEE
Confidence 544
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-11 Score=68.62 Aligned_cols=62 Identities=27% Similarity=0.500 Sum_probs=46.8
Q ss_pred cEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.|.|.+.+.|.|. +.|++++..+.. ..+........ .+.|.|.++..+|+|.|+|.|.|.
T Consensus 1 ~~~l~c~~~G~P~p~--v~W~k~g~~l~~----~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~ 62 (74)
T cd05748 1 SVRLEVPISGRPTPT--VTWSKDGKPLKL----SGRVQIETTAS--STSLVIKNAERSDSGKYTLTLKNP 62 (74)
T ss_pred CEEEEeeEeeeCCCe--EEEEECCEEcCC----CCeEEEEECCC--eEEEEECCCCcCcCEEEEEEEECC
Confidence 368999999998887 999999987721 12222222211 256999999999999999999998
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-11 Score=74.97 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=54.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeC--CCCeEEEEEcccC-CCCCEEEEEEecCC-Ccee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR--EGDEWTLHIKWAQ-KRDAGVYECQLSTQ-PVRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~i~~~~-~~d~G~Y~C~~~~~-~~~~ 76 (212)
+.|.|.+.|.|.|.+.|+|++. .+... +.|+...... ......|+|.++. .+|.|.|+|.+.|. +...
T Consensus 26 v~L~C~a~G~P~p~i~W~k~g~--~l~~~------~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~ 97 (109)
T cd05773 26 ANLVCQAQGVPRVQFRWAKNGV--PLDLG------NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDS 97 (109)
T ss_pred EEEEEECcccCCCEEEEEECCE--ECCCC------CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCc
Confidence 3689999999999999999773 22211 2344332111 1124579999997 59999999999996 5567
Q ss_pred EEEEEEEeccc
Q psy13371 77 FFVNLNVVVPT 87 (212)
Q Consensus 77 ~~~~l~v~~~~ 87 (212)
..+.|.+..+|
T Consensus 98 ~~i~L~~~~~p 108 (109)
T cd05773 98 LDIQLVSTSRP 108 (109)
T ss_pred EEEEEEecCCC
Confidence 77777776543
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-11 Score=70.02 Aligned_cols=66 Identities=14% Similarity=0.305 Sum_probs=46.9
Q ss_pred EEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 105 ~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.+.|.+.|.|.|. +.|++++.++..+.... ............+.|.|.++..+|+|.|+|.|.|..
T Consensus 2 ~i~~~v~G~P~Pt--i~W~kng~~l~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~ 67 (79)
T cd05855 2 CIPFTVKGNPKPT--LQWFHEGAILNESEYIC-TKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEY 67 (79)
T ss_pred eEEEEEeEeCCCc--eEEEECCEECCCCccee-eeeEeecccceEEEEEECCCCcccCEEEEEEEEcCC
Confidence 4789999999998 99999999884221110 011111222234569999999999999999999983
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=74.76 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=49.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++.. ... +.+.. ..+..|.|.+++.+|+|.|.|.+.|. +.....+
T Consensus 19 v~l~C~~~g~P~p~v~W~k~~~~-~~~--------~~~~~------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 83 (88)
T cd04968 19 VTLECFALGNPVPQIKWRKVDGS-MPS--------SAEIS------MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQG 83 (88)
T ss_pred EEEEEEeeEeCCCEEEEEECCCc-CCC--------ccEEE------EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEE
Confidence 36999999999999999997742 211 11111 13458999999999999999999986 4555666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 84 ~l~V 87 (88)
T cd04968 84 RIYV 87 (88)
T ss_pred EEEE
Confidence 6654
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=73.28 Aligned_cols=69 Identities=16% Similarity=0.326 Sum_probs=48.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.|.+.|+|++. .+.... ... .......|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 12 v~L~C~~~g~p~p~i~W~k~~~-~~~~~~--------~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 78 (82)
T cd05856 12 VRLKCVASGNPRPDITWLKDNK-PLTPTE--------IGE----SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATY 78 (82)
T ss_pred EEEEEEeeEeCCCcEEEEECCc-CCcCCc--------cce----ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence 4699999999999999999874 221111 000 1224568999999999999999999985 4444444
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|.
T Consensus 79 ~v~ 81 (82)
T cd05856 79 KVD 81 (82)
T ss_pred EEe
Confidence 443
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-11 Score=73.21 Aligned_cols=68 Identities=25% Similarity=0.401 Sum_probs=49.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-C-ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-P-VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~-~~~~~ 78 (212)
+.|.|.+.|. .|.+.|+|++. .+. ++|+.+. .....|+|.+++.+|+|.|.|.+.|. + ..+..
T Consensus 21 v~l~C~a~g~-~p~i~W~kng~--~l~--------~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~ 85 (91)
T cd05740 21 VTLTCEAEGQ-ATYIWWVNNGS--LLV--------PPRLQLS----NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDP 85 (91)
T ss_pred EEEEEEeCCC-CCEEEEEECCE--ECC--------CCCEEEe----CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence 3699999999 99999999773 221 2243333 13347999999999999999999996 2 34556
Q ss_pred EEEEE
Q psy13371 79 VNLNV 83 (212)
Q Consensus 79 ~~l~v 83 (212)
+.|.|
T Consensus 86 ~~L~V 90 (91)
T cd05740 86 YILNV 90 (91)
T ss_pred EEEEe
Confidence 66655
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-11 Score=72.03 Aligned_cols=73 Identities=29% Similarity=0.493 Sum_probs=54.2
Q ss_pred CCCceeeeCCCcEEEEeEE-eeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~-~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.|.+..+.+|+.+.|.|.+ .+.|.|. +.|++++..+.... .+...... ..|.|.++..+|+|.|+|.+.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~--i~W~k~g~~~~~~~---~~~~~~~~-----~~L~I~~~~~~D~G~Y~C~a~ 71 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPT--VSWRKDGQPLNLDN---ERVRIVDD-----GNLLIAEARKSDEGTYKCVAT 71 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCE--EEEEECCEECCCCC---CCEEEccC-----CEEEEeECCcccCEEEEEEEE
Confidence 3566788899999999998 5666565 99999998764321 12222222 249999999999999999999
Q ss_pred cCCe
Q psy13371 171 NADV 174 (212)
Q Consensus 171 n~~~ 174 (212)
|..+
T Consensus 72 N~~G 75 (86)
T cd05724 72 NMVG 75 (86)
T ss_pred eccC
Confidence 9843
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-11 Score=72.93 Aligned_cols=72 Identities=25% Similarity=0.370 Sum_probs=49.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-C-ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-P-VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~-~~~~~ 78 (212)
+.|.|.+.|.| +.+.|+++++..+.. .+++.... ......+|+|.+++.+|+|.|+|.+.|. + ..+..
T Consensus 18 ~~l~C~~~G~p-~~i~W~~~~~~~~~~--------~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s 87 (92)
T cd04977 18 KFFLCQVIGEP-KDISWFSPNGEKLVT--------QQQISVVQ-NDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT 87 (92)
T ss_pred EEEEEEeEeeC-CeEEEECCCCCEecc--------CCCEEEEe-CCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence 46999999997 499999865433332 22443332 3345678999999999999999999996 3 33444
Q ss_pred EEEE
Q psy13371 79 VNLN 82 (212)
Q Consensus 79 ~~l~ 82 (212)
+.|.
T Consensus 88 v~l~ 91 (92)
T cd04977 88 VNLK 91 (92)
T ss_pred EEEE
Confidence 4443
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-11 Score=70.76 Aligned_cols=67 Identities=22% Similarity=0.404 Sum_probs=50.8
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|....+.+|+.+.|.|.+.+. .+. +.|++++.++... .+.... . ..|.|.++..+|+|.|+|.|.|.
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~--v~W~k~g~~l~~~----~~~~~~-~-----~~L~I~~~~~~DsG~Y~C~a~n~ 67 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQS--INWTKDGVQLGEN----NRTRIT-G-----EEVQIKDAVPRDSGLYACVTSSP 67 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-Cce--EEEeeCCcCCCCC----ceEEEe-C-----CEEEECCCChhhCEEEEEEEeCC
Confidence 345678899999999999875 344 9999999877321 122221 2 24999999999999999999987
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=70.08 Aligned_cols=58 Identities=26% Similarity=0.473 Sum_probs=44.8
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.+.|.|. +.|++++.++... .. ..... ..|.|.++..+|+|.|+|.|.|..
T Consensus 1 ~~l~c~v~g~P~p~--v~W~k~g~~l~~~----~~-~~~~~-----~~L~I~~v~~~D~G~YtC~a~N~~ 58 (71)
T cd04976 1 VRLPVKVKAYPPPE--IQWYKNGKLISEK----NR-TKKSG-----HSLTIKDVTEEDAGNYTVVLTNKQ 58 (71)
T ss_pred CEEEeEEEEeCCCE--EEEEECCEECCCC----CE-EEcCC-----CEEEECcCCHHHCEEEEEEEEcCC
Confidence 36899999998777 9999999887322 11 11112 359999999999999999999983
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-11 Score=69.40 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=43.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC---C-CCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ---K-RDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~---~-~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.++|+|++. .+... .+.++.... .+.+|.|.++. + +|+|.|.|.+.|.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~--~~~~~-----~~~~~~~~~----~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~ 65 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGK--FFNVA-----KDPRVSMRR----RSGTLVIDFSGGGRPEDYEGEYQCFARNN 65 (77)
T ss_pred CEEEEeccccCCCEEEEEECCE--EccCc-----CCCcEEEeC----CCceEEEeccCCCCCCCCCEEEEEEEEec
Confidence 4799999999999999999873 22111 134554431 34578887764 2 4699999999996
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.5e-11 Score=70.16 Aligned_cols=73 Identities=18% Similarity=0.326 Sum_probs=50.0
Q ss_pred EEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec---CceEEEEEEEeeeeecCCEEEEEEcccC-CeeEEEEE
Q psy13371 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK---GEVTTSYLLIQQAELKDSGKYSCSPSNA-DVASVYVH 180 (212)
Q Consensus 105 ~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~n~-~~~~~~~~ 180 (212)
.|.|.+.+.|.|. ++|++++.++...... ....... .....+.|.|.++..+|+|.|+|.|.|. ......+.
T Consensus 2 ~i~~~v~G~P~P~--v~W~k~g~~i~~~~~~--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 77 (81)
T cd04971 2 CIPFTVRGNPKPT--LTWYHNGAVLNESDYI--RTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSIS 77 (81)
T ss_pred eEEEEeEeeCCCc--EEEEECCEECcCCCce--eEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEE
Confidence 4789999998888 9999999988532211 1111111 1223456999999999999999999998 33444444
Q ss_pred E
Q psy13371 181 V 181 (212)
Q Consensus 181 v 181 (212)
+
T Consensus 78 ~ 78 (81)
T cd04971 78 A 78 (81)
T ss_pred e
Confidence 3
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-11 Score=71.78 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=52.4
Q ss_pred eeCCCceeee---CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee-ecCCEEE
Q psy13371 90 ILGSPDLHVD---EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE-LKDSGKY 165 (212)
Q Consensus 90 ~~~~~~~~~~---~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y 165 (212)
+..|.+..+. +|+.+.|.|.+.+.|.|. +.|++++..+.... ..+. ...++ .|.|.++. .+|.|.|
T Consensus 5 ~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~--i~W~k~g~~l~~~~--~~~~-~~~~g-----~L~i~~~~~~~D~G~Y 74 (94)
T cd05848 5 VQEPDDAIFPTDSDEKKVILNCEARGNPVPT--YRWLRNGTEIDTES--DYRY-SLIDG-----NLIISNPSEVKDSGRY 74 (94)
T ss_pred EECCCcEEccCCCCCCEEEEEEEeeecCCCE--EEEEECCeECccCC--CceE-EeeCC-----eEEEccCCccCcCEEE
Confidence 3444444332 478999999999998776 99999998774221 1111 22222 38888874 6999999
Q ss_pred EEEcccCCee
Q psy13371 166 SCSPSNADVA 175 (212)
Q Consensus 166 ~C~~~n~~~~ 175 (212)
+|.|.|..+.
T Consensus 75 ~C~A~N~~G~ 84 (94)
T cd05848 75 QCLATNSIGS 84 (94)
T ss_pred EEEEEcCCCe
Confidence 9999998543
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-11 Score=69.79 Aligned_cols=60 Identities=30% Similarity=0.563 Sum_probs=44.9
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++|.|.+.+.|.|. +.|++++.++.... ......... ..|.|.++..+|+|.|.|.|.|.
T Consensus 1 v~L~C~~~g~P~p~--v~W~k~g~~l~~~~---~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~ 60 (77)
T cd05760 1 VTLRCHIDGHPRPT--YQWFRDGTPLSDGQ---GNYSVSSKE----RTLTLRSAGPDDSGLYYCCAHNA 60 (77)
T ss_pred CEEEEEeeecCCCc--EEEEECCEECCCCC---ccEEEeCCC----CEEEEeeCCcccCEEEEEEEEeC
Confidence 47999999998887 99999998763221 111222111 25999999999999999999997
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=70.46 Aligned_cols=61 Identities=26% Similarity=0.369 Sum_probs=43.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCC----CCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQK----RDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|+|++. .+... .+.++... ..++.|.|.++.. +|+|.|.|.+.|.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~--~l~~~-----~~~~~~~~----~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~ 65 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGT--HFDPE-----KDPRVTMK----PDSGTLVIDNMNGGRAEDYEGEYQCYASNE 65 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCe--ECCCC-----CCCCEEEe----CCCCEEEEeccCCCCCcCCCEEEEEEEEcC
Confidence 5799999999999999999773 22211 12333332 1345788887754 7899999999996
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=69.75 Aligned_cols=59 Identities=22% Similarity=0.481 Sum_probs=44.1
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.|.|.|. +.|++++..+... ........ ..|.|.++..+|+|.|+|.|.|..
T Consensus 1 ~~L~C~~~G~P~P~--v~W~k~~~~~~~~----~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~~ 59 (71)
T cd05876 1 LVLECIAEGLPTPE--VHWDRIDGPLSPN----RTKKLNNN-----KTLQLDNVLESDDGEYVCTAENSE 59 (71)
T ss_pred CEEEEEeeEecCCe--EEEEECCcCCCCC----ceeEEcCC-----CEEEEcccCHHhCEEEEEEEEcCC
Confidence 46899999998887 9999998765211 11111111 259999999999999999999983
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.4e-11 Score=71.64 Aligned_cols=76 Identities=24% Similarity=0.470 Sum_probs=51.8
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEee--C--CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC---C
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYD--S--SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---D 173 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~---~ 173 (212)
|+.+.|.|.+.+.|.|. +.|++++...... . ....+......+ .|.|.++..+|+|.|+|.|.|. .
T Consensus 1 G~~v~L~C~~~g~P~p~--v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~ 73 (90)
T cd05726 1 GRTVTFQCEATGNPQPA--IFWQKEGSQNLLFSYQPPQSSSRFSVSQTG-----DLTITNVQRSDVGYYICQTLNVAGSI 73 (90)
T ss_pred CCEEEEEEECCccCCCE--EEEEeCCCcceeecccCCCCCCeEEECCCC-----eEEEeeCChhhCEEEEEEEEcCCCce
Confidence 67899999998887776 9999987643211 0 112223322222 4999999999999999999997 3
Q ss_pred eeEEEEEEee
Q psy13371 174 VASVYVHVLN 183 (212)
Q Consensus 174 ~~~~~~~v~~ 183 (212)
...+.+.|..
T Consensus 74 ~~~~~l~V~~ 83 (90)
T cd05726 74 LTKAYLEVTD 83 (90)
T ss_pred EEEEEEEEee
Confidence 3444555543
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=70.55 Aligned_cols=73 Identities=23% Similarity=0.430 Sum_probs=52.0
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEE-cCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH-HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.|.+..+..|+.+.|.|.+.+.| + .+.|++ ++..+.. ........ .+ ...+.|.|.++..+|+|.|+|.|.
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p-~--~i~W~~~~~~~~~~---~~~~~~~~-~~-~~~~~L~I~~v~~~D~G~Y~C~A~ 77 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEP-K--DISWFSPNGEKLVT---QQQISVVQ-ND-DVRSTLTIYNANIEDAGIYKCVAT 77 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeC-C--eEEEECCCCCEecc---CCCEEEEe-CC-CCEEEEEEecCCcccCEEEEEEEE
Confidence 45667889999999999999875 4 499997 4544422 11111211 11 123569999999999999999999
Q ss_pred cC
Q psy13371 171 NA 172 (212)
Q Consensus 171 n~ 172 (212)
|.
T Consensus 78 N~ 79 (92)
T cd04977 78 DA 79 (92)
T ss_pred cC
Confidence 97
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=70.48 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=51.4
Q ss_pred eCCCceeeeC---CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee-ecCCEEEE
Q psy13371 91 LGSPDLHVDE---GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE-LKDSGKYS 166 (212)
Q Consensus 91 ~~~~~~~~~~---g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~ 166 (212)
..|....+.+ |+.+.|.|.+.+.|.|. +.|++++..+..... .... ...+ .|.|.+.. ..|.|.|.
T Consensus 6 ~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~--i~W~~~g~~l~~~~~--~~~~-~~~g-----~L~I~~~~~~~D~G~Y~ 75 (94)
T cd05850 6 EQPSSLLFPEGSPEEKVTLGCRARASPPAT--YRWKMNGTEIKFAPE--SRYT-LVAG-----NLVINNPQKARDAGSYQ 75 (94)
T ss_pred ECCCCEEecCCCCCCeEEEEeEceeCCCCE--EEEEECCEECccCCC--ceEE-EECC-----eEEEccCCccCcCEEEE
Confidence 3444444434 46899999999987776 999999988742211 1222 2222 38887765 59999999
Q ss_pred EEcccCCee
Q psy13371 167 CSPSNADVA 175 (212)
Q Consensus 167 C~~~n~~~~ 175 (212)
|.|.|..+.
T Consensus 76 C~A~N~~G~ 84 (94)
T cd05850 76 CLAINRCGT 84 (94)
T ss_pred EEEEcCcCc
Confidence 999998443
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=69.58 Aligned_cols=62 Identities=27% Similarity=0.509 Sum_probs=46.3
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
++|.|.+.+.|.|. +.|++++.++.... ..+......+ .|.|.+++.+|+|.|+|.|.|..+
T Consensus 1 a~l~C~~~G~P~p~--v~W~k~~~~~~~~~--~~~~~~~~~g-----~L~i~~~~~~D~G~Y~C~a~N~~G 62 (74)
T cd05738 1 ATMLCAASGNPDPE--ITWFKDFLPVDTTS--NGRIKQLRSG-----ALQIENSEESDQGKYECVATNSAG 62 (74)
T ss_pred CEEEEEEeEecCCE--EEEEECCEECccCC--CCCEEEcCCc-----EEEECCCChhhCEEEEEEEECCCC
Confidence 47899999988787 99999998763221 1223333332 399999999999999999999843
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=68.31 Aligned_cols=61 Identities=26% Similarity=0.465 Sum_probs=41.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCC----CCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQK----RDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|+|++. . +... .+.++... ..+++|.|..+.. .|+|.|+|.+.|.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~-~-l~~~-----~~~~~~~~----~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~ 65 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGT-H-FDID-----KDPKVTMK----PNTGTLVINIMNGEKAEAYEGVYQCTARNE 65 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCe-E-CCCc-----CCCCEEEe----CCCceEEEeccccCCCCCCCEEEEEEEEcC
Confidence 5799999999999999999763 2 2111 12233322 1344677776654 3789999999996
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.3e-11 Score=71.39 Aligned_cols=78 Identities=26% Similarity=0.517 Sum_probs=49.2
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcC----eEEEeeCCCCceeEEeecCc----eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHD----EVISYDSSRGGVSVITEKGE----VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.|.|. +.|+++. ..+....... .......+. ...+.|.|.+++.+|+|.|+|.|.|.
T Consensus 1 G~~v~L~C~~~g~P~P~--i~W~k~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd05858 1 GSTVEFVCKVYSDAQPH--IQWLKHVEKNGSKYGPDGLPY-VTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS 77 (90)
T ss_pred CCeEEEEEEEecCCCCE--EEEEEecccCCcEeCCCCCee-EEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence 67899999999988776 9999853 3332111000 111111110 01246999999999999999999997
Q ss_pred ---CeeEEEEEE
Q psy13371 173 ---DVASVYVHV 181 (212)
Q Consensus 173 ---~~~~~~~~v 181 (212)
...++.+.|
T Consensus 78 ~G~~~~~a~L~V 89 (90)
T cd05858 78 IGISHHSAWLTV 89 (90)
T ss_pred CCcccceEEEEE
Confidence 334444443
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-11 Score=71.53 Aligned_cols=70 Identities=20% Similarity=0.429 Sum_probs=45.1
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcC----eEEEeeCCCCceeEEe--ecC-ceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHD----EVISYDSSRGGVSVIT--EKG-EVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~----~~~~~~~~~~~~~~~~--~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.++|.|.+.+.|.|. +.|++++ ..+............. ... ......|.|.++..+|+|.|+|.|.|.
T Consensus 1 G~~v~l~C~v~g~P~P~--i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd04974 1 GSDVEFHCKVYSDAQPH--IQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNS 77 (90)
T ss_pred CCcEEEEEEEeCCCCCe--EEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecc
Confidence 67899999999998888 9999864 2221111110000100 000 001135999999999999999999998
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.8e-11 Score=69.18 Aligned_cols=67 Identities=28% Similarity=0.533 Sum_probs=51.1
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCC-CceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.|.+..+..|+.+.|.|.+.|.|.| . +.|.+++.++..... . ..+.|.|..+ .|.|.|.|.|.
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~--I~W~k~g~~l~~~~~--------~----~~s~L~i~~~--~d~g~Y~C~A~ 67 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVE--ILWWQGGSPLGDPPA--------P----SPSVLNVPGL--NETSKFSCEAH 67 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeE--EEEEECCEECCCCCC--------C----CCCEEEEccc--cCCeEEEEEEE
Confidence 4667889999999999999999877 6 999999987732000 0 1124777765 57899999999
Q ss_pred cCCe
Q psy13371 171 NADV 174 (212)
Q Consensus 171 n~~~ 174 (212)
|..+
T Consensus 68 N~~G 71 (81)
T cd05749 68 NAKG 71 (81)
T ss_pred eccC
Confidence 9844
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-11 Score=68.39 Aligned_cols=57 Identities=23% Similarity=0.448 Sum_probs=44.6
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.|.|.|. +.|+++++++... .. ... + ..|.|.++..+|+|.|+|.|.|..
T Consensus 1 ~~~~c~v~G~P~P~--v~W~k~g~~l~~~----~~--~~~-~----~~L~I~~v~~~D~G~YtC~a~N~~ 57 (70)
T cd05864 1 VKIPVKYYGYPPPE--VKWYKNGQLIVLN----HT--FKR-G----VHLTIYEVTEKDAGNYTVVLTNPI 57 (70)
T ss_pred CEEEeEEEEeCCCE--EEEEECCEECCCC----CE--Ecc-C----CEEEECcCCHHHCEEEEEEEEECC
Confidence 36899999998887 9999999987321 11 111 1 249999999999999999999984
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.8e-11 Score=68.12 Aligned_cols=62 Identities=32% Similarity=0.656 Sum_probs=45.1
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEc-CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHH-DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
|+.+.|.|.+.+.|.|. +.|++. +..+. . ..+.....++ .|.|..+..+|.|.|+|.|.|+.
T Consensus 1 G~~~~l~C~~~g~P~p~--v~W~~~~~~~~~-~---~~~~~~~~~~-----~L~i~~~~~~D~G~Y~C~a~N~~ 63 (74)
T cd05764 1 GQRATLRCKARGDPEPA--IHWISPDGKLIS-N---SSRTLVYDNG-----TLDILITTVKDTGSFTCIASNAA 63 (74)
T ss_pred CCeEEEEEEccCcCCCE--EEEEeCCCEEec-C---CCeEEEecCC-----EEEEEECChhhCEEEEEEEECCC
Confidence 67899999998887776 999974 55442 1 1122222222 48999999999999999999983
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-11 Score=67.65 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=44.5
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+.|.|.|. +.|++++.++... ..+.. ..+ ..|.|.++..+|+|.|+|.|.|.
T Consensus 1 ~~l~c~v~g~P~P~--v~W~kdg~~l~~~---~~~~~--~~~----~~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 1 YRLTPKVKAFPAPE--VIWLKDGLPAAEK---CSRYH--VDG----YSLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred CeEEeeEEEcCCCe--EEEEECCEECCCC---CcEEE--eCC----CEEEECcCCHHHCEEEEEEEEcc
Confidence 36899999998888 9999999876321 11221 122 24999999999999999999997
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=70.44 Aligned_cols=63 Identities=24% Similarity=0.431 Sum_probs=46.5
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee-ecCCEEEEEEcccCCe
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE-LKDSGKYSCSPSNADV 174 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~~ 174 (212)
|+.+.|.|.+.+.|.|. +.|++++..+... ..+.. ...+ .|.|.++. .+|+|.|+|.|.|..+
T Consensus 19 ~~~v~l~C~a~G~P~P~--i~W~k~~~~i~~~---~~~~~-~~~g-----~L~I~~~~~~~D~G~Y~C~A~N~~G 82 (93)
T cd05849 19 EGKVSVNCRARANPFPI--YKWRKNNLDIDLT---NDRYS-MVGG-----NLVINNPDKYKDAGRYVCIVSNIYG 82 (93)
T ss_pred CCeEEEeCcCccCCCCE--EEEEECCEEccCC---CCeEE-EECC-----EEEECcCCcCCCCEEEEEEEEeCcc
Confidence 45799999999988776 9999999876321 11222 2222 48898875 5899999999999843
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=69.26 Aligned_cols=67 Identities=27% Similarity=0.474 Sum_probs=50.3
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
....|+.+.|.|.+.+.|.|. +.|++++..+...... .... ....|.|.++..+|+|.|+|.+.|..
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~--i~W~k~~~~~~~~~~~-----~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~ 71 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPD--ITWLKDNKPLTPTEIG-----ESRK---KKWTLSLKNLKPEDSGKYTCHVSNRA 71 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCc--EEEEECCcCCcCCccc-----eecC---ceEEEEEccCChhhCEEEEEEEEcCC
Confidence 456799999999999888777 9999998766322111 1111 12459999999999999999999983
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=67.87 Aligned_cols=65 Identities=18% Similarity=0.351 Sum_probs=45.7
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|.+.+ .|.+.+.|+|++. .+..... .+.++... .......|.|.++..+|+|.|+|.+.|.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~-~i~~~~~----~~~~~~~~--~~~~~~~L~I~~~~~~DsG~Y~C~a~N~ 66 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGK-EIGAKNK----PDNKIKIR--KKKKSSELQISKASLADNGEYKCMVSSK 66 (76)
T ss_pred CEEEEecccCCCCCceEEEECCc-ccccCCC----CCceEEEE--eCCcEEEEEECcCCcccCEEEEEEEEeC
Confidence 579999875 6889999999763 2221110 12233332 2344568999999999999999999985
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.4e-11 Score=72.30 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=48.9
Q ss_pred CeeEeeeCC-----CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc
Q psy13371 1 MLHQRKLKG-----LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV 74 (212)
Q Consensus 1 ~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~ 74 (212)
+.|.|.+.+ .|.|.|.|+|++.....+.. .+.|+.. .+..|.|.++..+|+|.|+|.+.|. +.
T Consensus 17 ~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~-----~~~r~~~------~~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 17 VVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTE-----ERSRMHQ------QKDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred eEEECCCCCcccccCCCceEEEEEcCCCCccccc-----ccceeee------cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 479999999 68899999998742111110 1123222 2348999999999999999999986 44
Q ss_pred eeEEEEEE
Q psy13371 75 RSFFVNLN 82 (212)
Q Consensus 75 ~~~~~~l~ 82 (212)
.+..+.|.
T Consensus 86 ~~~~~~L~ 93 (94)
T cd05756 86 MKVSISLT 93 (94)
T ss_pred EEEEEEEE
Confidence 45555554
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.4e-11 Score=72.29 Aligned_cols=71 Identities=28% Similarity=0.481 Sum_probs=50.5
Q ss_pred ceeeeCCCcEEEEeEEee-----CCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 95 DLHVDEGSTINLTCSIKY-----SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
...+.+|+.+.|.|.+.+ .|.|. +.|++++..+........+... .+ ..|.|.++..+|+|.|+|.+
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~--v~Wyk~~~~~~~~~~~~~r~~~-~~-----~~L~I~~~~~~DsG~Y~C~~ 79 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLN--LTWYKSDGKTPIPTEERSRMHQ-QK-----DLLWFLPAALEDSGLYTCVV 79 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCce--EEEEEcCCCCcccccccceeee-cC-----CeEEEccCCcccCeEEEEEE
Confidence 345778999999999987 45555 9999998764322111112211 12 24999999999999999999
Q ss_pred ccCC
Q psy13371 170 SNAD 173 (212)
Q Consensus 170 ~n~~ 173 (212)
.|..
T Consensus 80 ~N~~ 83 (94)
T cd05756 80 RNST 83 (94)
T ss_pred cCCC
Confidence 9983
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=69.82 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=53.9
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeee-----eecCCEEE
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA-----ELKDSGKY 165 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y 165 (212)
..|.+..+.+|+++.|.|.+.+.|.|. +.|++++..+..... .......++ .+.|.++ ..+|.|.|
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~--i~W~k~g~~l~~~~~--~~~~~~~~~-----~l~i~~v~~~~~~~~D~G~Y 74 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPPK--IEWKKDGVLLNLVSD--ERRQQLPNG-----SLLITSVVHSKHNKPDEGFY 74 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCCE--EEEEECCeECccccC--cceEEccCC-----eEEEeeeeccCCCCCcCEEE
Confidence 345667788999999999999887666 999999987743221 112222232 2555555 57899999
Q ss_pred EEEcccC-Cee
Q psy13371 166 SCSPSNA-DVA 175 (212)
Q Consensus 166 ~C~~~n~-~~~ 175 (212)
+|.|.|. .+.
T Consensus 75 ~C~a~N~~~G~ 85 (95)
T cd05722 75 QCVAQNDSLGS 85 (95)
T ss_pred EEEEECCccCc
Confidence 9999998 543
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-11 Score=68.45 Aligned_cols=58 Identities=24% Similarity=0.586 Sum_probs=43.6
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
++|.|.+.+.|.|. +.|++++..+. . .+......+ .|.|.++..+|+|.|+|.|.|..
T Consensus 1 v~l~C~~~g~P~p~--v~W~k~~~~~~----~-~~~~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~ 58 (69)
T cd05725 1 VEFQCEVGGDPVPT--VLWRKEDGELP----K-GRAEILDDK-----SLKIRNVTAGDEGSYTCEAENMV 58 (69)
T ss_pred CEEEEECccCCCCE--EEEEECCccCC----C-CcEEEeeCC-----EEEECcCChhHCEEEEEEEEcCC
Confidence 47899999887776 99999976542 1 122222222 49999999999999999999983
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-10 Score=69.12 Aligned_cols=76 Identities=22% Similarity=0.400 Sum_probs=52.6
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCC----CceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR----GGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
.+..+.+|+.+.|.|.+.+.|.|. +.|.+.++.+...... ..+....... .....|.|.++..+|.|.|+|.+
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~--v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSS--LQWSNTAQQTLYFGEKRALRDNRIQLVKST-PTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCe--EEEeccCccEEEeCCeEEEeCCeEEEEeCC-CceEEEEECCCCcccCEEEEEEE
Confidence 456789999999999999887776 9999887643221110 1111111111 12356999999999999999999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
...
T Consensus 82 ~t~ 84 (95)
T cd05882 82 FTM 84 (95)
T ss_pred Eee
Confidence 875
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=69.85 Aligned_cols=71 Identities=25% Similarity=0.330 Sum_probs=47.5
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.+.|.+.+.|.+.+............ ..........+.|.|.+++.+|+|.|+|.+.|.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~ 71 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTR-QSLSEATELSSTLTIPNATLKDSGTYTCAASSG 71 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecc-cccccceEEEEEEEECCCChhhCEEEEEEEccC
Confidence 68899999999984455559998877543211000000 011111223467999999999999999999997
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=69.10 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=48.4
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.|.|.+.+.+.+...+.|...++......................+.|.|.+++.+|+|.|+|.|.|.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~ 72 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSG 72 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeec
Confidence 688999999988877777789988775431110000000001111223467999999999999999999997
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-11 Score=67.89 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=42.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|++. . +... .++.. +...|+|.++ .|+|.|+|.+.|. +.....+
T Consensus 4 v~L~C~a~G~P~P~v~W~k~g~-~-l~~~-------~~~~~------~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a 66 (69)
T cd05739 4 VNLTCVAVGAPMPYVKWMKGGE-E-LTKE-------DEMPV------GRNVLELTNI--YESANYTCVAISSLGMIEATA 66 (69)
T ss_pred EEEEEEeeecCCCEEEEEECCE-E-CCCc-------cceec------CccEEEEecc--ccCeeEEEEEEeCCCEEEEEE
Confidence 4699999999999999999873 2 2211 12211 2336888887 4899999999986 4344433
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.21 E-value=9e-11 Score=67.70 Aligned_cols=59 Identities=24% Similarity=0.408 Sum_probs=43.8
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.+.|.|. +.|++++..+.. . .......+ ..|.|.++..+|+|.|+|.|.|..
T Consensus 1 v~l~C~~~g~P~p~--v~W~k~~~~~~~----~-~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~ 59 (71)
T cd05731 1 LLLECIAEGLPTPE--ISWIKIGGELPA----D-RTKFENFN----KTLKIDNVSEEDDGEYRCTASNSL 59 (71)
T ss_pred CEEEEEeeEecCCe--EEEEECCeECCC----C-ceeEecCC----CEEEECCCCHHHCEEEEEEEEeCC
Confidence 47899999988777 999999876521 1 11111111 259999999999999999999983
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.6e-11 Score=70.29 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=44.6
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+ .|.|.|.+.|+|++. .+... +.++... .+..|.|.+++.+|+|.|.|.+.|.
T Consensus 14 v~l~C~~~~g~p~p~i~W~k~g~--~~~~~------~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 14 AVLECSPPRGHPEPTVSWRKDGQ--PLNLD------NERVRIV-----DDGNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred EEEEEECCCCCCCCEEEEEECCE--ECCCC------CCCEEEc-----cCCEEEEeECCcccCEEEEEEEEec
Confidence 3689998 788999999999773 22211 2344443 2347999999999999999999985
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-10 Score=67.54 Aligned_cols=77 Identities=18% Similarity=0.088 Sum_probs=49.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC---ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP---VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~ 77 (212)
+.|.|.+.+.|.+.+.|+++++........ ......+.......|+|.+++.+|+|.|.|.+.+.. ..+.
T Consensus 4 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-------~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~ 76 (84)
T cd05861 4 ITVNCIVQGNEVVDFSWTYPGKDIGKGIPE-------VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFK 76 (84)
T ss_pred EEEEEEEECCCccEEEEEECCccCCCCceE-------EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeE
Confidence 469999999999999999766311100000 000000011124579999999999999999998752 3455
Q ss_pred EEEEEEe
Q psy13371 78 FVNLNVV 84 (212)
Q Consensus 78 ~~~l~v~ 84 (212)
.+.++|.
T Consensus 77 sv~i~V~ 83 (84)
T cd05861 77 KVNITVH 83 (84)
T ss_pred EEEEEEe
Confidence 5666654
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.3e-11 Score=69.98 Aligned_cols=77 Identities=17% Similarity=0.098 Sum_probs=49.2
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.+. |.|.+.|.+++........ ...+.... +.......|+|.+++.+|+|.|+|.+.+. +..+.
T Consensus 4 ~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~-----~~~~~~~~-~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~ 77 (84)
T cd05742 4 LVLNCTVLTELNEGVDFQWTYPGKKRGRGKS-----MVTRQSLS-EATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE 77 (84)
T ss_pred EEEEEEEEeCCCccEEEEEecCCcccCCceE-----eecccccc-cceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence 4699999999 8899999886632110000 00011111 11123457999999999999999999986 34555
Q ss_pred EEEEEE
Q psy13371 78 FVNLNV 83 (212)
Q Consensus 78 ~~~l~v 83 (212)
...|.|
T Consensus 78 s~~v~v 83 (84)
T cd05742 78 STKVNI 83 (84)
T ss_pred EEEEEE
Confidence 555544
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=69.11 Aligned_cols=71 Identities=21% Similarity=0.380 Sum_probs=50.2
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+....+.+|+.+.|.|.+.+ |.+. +.|++++..+........+... ..+ .|.|.+++.+|+|.|.|.+.+.
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~--i~W~k~~~~~~~~~~~~~~~~~-~~~-----~L~I~~~~~~D~G~Y~C~a~~~ 73 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLAS--VVWLFQGGPLQRKEEPEERLLV-TED-----GLLIRSVSPADAGVYTCQSVEH 73 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCce--EEEEECCcccccccCcCceEEE-cCC-----CEEEccCCHHHCEEEEEEEecC
Confidence 34567889999999999865 4454 9999998766432110111111 222 2899999999999999999876
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=66.47 Aligned_cols=68 Identities=25% Similarity=0.382 Sum_probs=45.2
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
+.|.|.+.+. .|...+.|+++++.+........+...... ...+.|.|.++..+|+|.|+|.+.|+.+
T Consensus 1 ~~L~C~a~~~-~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~DsG~Y~C~a~N~~g 68 (76)
T cd05895 1 LVLRCETVSE-YPSLRFKWFKNGKEIGAKNKPDNKIKIRKK--KKSSELQISKASLADNGEYKCMVSSKLG 68 (76)
T ss_pred CEEEEecccC-CCCCceEEEECCcccccCCCCCceEEEEeC--CcEEEEEECcCCcccCEEEEEEEEeCCC
Confidence 4689998754 233349999999877533222122222111 1234699999999999999999999843
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=67.19 Aligned_cols=66 Identities=26% Similarity=0.407 Sum_probs=45.8
Q ss_pred EEEEeEEee-CCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 104 INLTCSIKY-SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 104 ~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
+.|.|.+.+ .|.|. +.|++++..+....... ....... ...+.|.|.++..+|.|.|+|.|.|..+
T Consensus 1 ~~l~C~~~g~~P~p~--~~W~k~g~~l~~~~~~~-~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 67 (75)
T cd05750 1 LVLKCEATSEYPSLR--FKWFKDGKELNRKNKPR-NIKIRNK--KKNSELQINKAKLADSGEYTCVVENILG 67 (75)
T ss_pred CEEEEEccCCCCCce--EEEEcCCeeccccCCcc-eEEEEec--CceEEEEEccCCcccCeEEEEEEEEcCC
Confidence 468999998 66665 99999998774322111 1111111 1235699999999999999999999843
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-10 Score=64.27 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=43.6
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
|+.+.|.|.+.+.|.|. +.|++++.++... ... .. +. +.|.|.++ .|+|.|+|.|.|..+
T Consensus 1 G~~v~L~C~a~G~P~P~--v~W~k~g~~l~~~----~~~-~~--~~---~~L~i~~~--~d~G~Y~C~A~N~~G 60 (69)
T cd05739 1 GGSVNLTCVAVGAPMPY--VKWMKGGEELTKE----DEM-PV--GR---NVLELTNI--YESANYTCVAISSLG 60 (69)
T ss_pred CCeEEEEEEeeecCCCE--EEEEECCEECCCc----cce-ec--Cc---cEEEEecc--ccCeeEEEEEEeCCC
Confidence 67899999999998887 9999999876321 111 11 11 24888776 479999999999843
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=67.85 Aligned_cols=66 Identities=27% Similarity=0.553 Sum_probs=45.0
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCe---EEEeeCCC-CceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDE---VISYDSSR-GGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
|+.+.|.|.+.+.|.|. +.|++++. ........ ........ ...|.|.++..+|+|.|+|.|.|..
T Consensus 1 G~~v~l~C~~~g~P~p~--v~W~k~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~ 70 (81)
T cd05765 1 GETASFHCDVTGRPPPE--ITWEKQVHGKENLIMRPNHVRGNVVVTN-----IGQLVIYNAQPQDAGLYTCTARNSG 70 (81)
T ss_pred CCcEEEEeeccccCCCc--EEEEecCCCCcceeecCCcccCCEEEcc-----ccEEEEccCCcccCEEEEEEEecCC
Confidence 67899999999888777 99998742 11111100 00111111 1359999999999999999999983
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-10 Score=68.31 Aligned_cols=69 Identities=23% Similarity=0.408 Sum_probs=52.2
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
.|.+..+..|+++.|.|.+.+ +.+ .+.|.+++.++.... .+... .++. |.|.+++.+|+|.|+|.+.+
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~--~i~W~~ng~~i~~~~---~r~~~-~~~~-----L~I~nv~~~DsG~Y~C~a~e 69 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLA--RVVWKFDGKVLTPES---AKYLL-YRDG-----LLIFNASEADAGRYQCLSVE 69 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCC--eEEEEECCEECCCCC---ceEEE-ECCc-----EEEeCCCHHHCEEEEEEEEe
Confidence 356678899999999999753 334 599999999885331 23332 3333 99999999999999999987
Q ss_pred C
Q psy13371 172 A 172 (212)
Q Consensus 172 ~ 172 (212)
.
T Consensus 70 ~ 70 (87)
T cd05873 70 K 70 (87)
T ss_pred c
Confidence 6
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=67.21 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=45.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+. .+.+.|+|++. .+.. +.|+.+. ...|.|.+++.+|+|.|+|.+.+. +.....+
T Consensus 12 v~l~C~~~~~-~~~v~W~k~g~-~l~~--------~~~~~~~------~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 12 LQLRCRLRDD-VQSINWTKDGV-QLGE--------NNRTRIT------GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred EEEEEEecCC-CceEEEeeCCc-CCCC--------CceEEEe------CCEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 3689999996 57899999873 2221 2344443 127999999999999999999875 3333333
Q ss_pred EE
Q psy13371 80 NL 81 (212)
Q Consensus 80 ~l 81 (212)
.|
T Consensus 76 ~v 77 (79)
T cd04973 76 SV 77 (79)
T ss_pred EE
Confidence 33
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-10 Score=69.15 Aligned_cols=59 Identities=24% Similarity=0.435 Sum_probs=42.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC-CCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|+|++. .+.... +.++... +.+|.|.++. .+|+|.|.|.+.|.
T Consensus 22 v~l~C~~~G~P~P~i~W~k~g~--~l~~~~-----~~~~~~~------~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 22 VILNCEARGNPVPTYRWLRNGT--EIDTES-----DYRYSLI------DGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred EEEEEEeeecCCCEEEEEECCe--ECccCC-----CceEEee------CCeEEEccCCccCcCEEEEEEEEcC
Confidence 3699999999999999999773 222111 1233332 2378888874 69999999999996
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=65.13 Aligned_cols=68 Identities=22% Similarity=0.362 Sum_probs=45.7
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.++|.|.+.+.|.+. +.|.+.++..... ...............+.|.|.+++.+|+|.|+|.+.|.
T Consensus 1 Ge~~~l~C~~~~~~~~~--~~W~~~~~~~~~~--~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~ 68 (84)
T cd05861 1 GETITVNCIVQGNEVVD--FSWTYPGKDIGKG--IPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHES 68 (84)
T ss_pred CCcEEEEEEEECCCccE--EEEEECCccCCCC--ceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEEC
Confidence 68899999998876555 9999876532100 00000111122223467999999999999999999985
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=69.04 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=43.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC-CCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.++|+|++. .+ ... +.|+... +..|.|.++. .+|+|.|.|.+.|.
T Consensus 22 v~l~C~a~G~P~P~i~W~k~~~-~i-~~~------~~~~~~~------~g~L~I~~~~~~~D~G~Y~C~A~N~ 80 (93)
T cd05849 22 VSVNCRARANPFPIYKWRKNNL-DI-DLT------NDRYSMV------GGNLVINNPDKYKDAGRYVCIVSNI 80 (93)
T ss_pred EEEeCcCccCCCCEEEEEECCE-Ec-cCC------CCeEEEE------CCEEEECcCCcCCCCEEEEEEEEeC
Confidence 3689999999999999999873 22 111 2344332 2478998885 69999999999996
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=66.76 Aligned_cols=77 Identities=23% Similarity=0.406 Sum_probs=51.5
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC----CCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS----RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
+.+..+.+|+.+.|.|.+.+.|.|. +.|++.++....... ...+...... .....+|.|.+++.+|+|.|+|.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~--v~W~~~~~~~l~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDNRIELVRA-SWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceE--EEEeCCCCeEEEEcCcccccCCCEEEEEC-CCCcEEEEECcCCcccCEEEEEE
Confidence 3457889999999999998877666 999865432211110 1122222111 11224699999999999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
+.+.
T Consensus 81 ~~t~ 84 (95)
T cd07701 81 LFTM 84 (95)
T ss_pred eEee
Confidence 9875
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.6e-10 Score=68.55 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=44.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEE--cccCCCCCEEEEEEecCC-Cc-ee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHI--KWAQKRDAGVYECQLSTQ-PV-RS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i--~~~~~~d~G~Y~C~~~~~-~~-~~ 76 (212)
+.|.|.+.|.|.|.+.|+|++. .+..... ....+.... ..+....+.+ ..++.+|+|.|+|.+.|. +. .+
T Consensus 19 ~~l~C~~~g~P~p~i~W~k~g~--~l~~~~~--~~~~~~~~~--~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s 92 (100)
T cd07693 19 ATLNCKAEGRPTPTIQWLKNGQ--PLETDKD--DPRSHRIVL--PSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVS 92 (100)
T ss_pred EEEEeeCCcCCCCEEEEEECCE--ECccccC--CCCcceEEe--cCCcEEEEEeeccCCCcCcCEEEEEEEEccccceec
Confidence 3699999999999999999873 2221000 001111111 1111222222 344789999999999996 33 45
Q ss_pred EEEEEEE
Q psy13371 77 FFVNLNV 83 (212)
Q Consensus 77 ~~~~l~v 83 (212)
..+.|.|
T Consensus 93 ~~~~l~v 99 (100)
T cd07693 93 RNASLEV 99 (100)
T ss_pred ceEEEEe
Confidence 5555554
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-10 Score=66.75 Aligned_cols=62 Identities=31% Similarity=0.471 Sum_probs=42.8
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeC----CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDS----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++|.|.+.+.|.|. +.|++++....... ....+...... ..|.|.++..+|+|.|.|.|.|.
T Consensus 1 v~l~C~~~G~P~P~--v~W~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~ 66 (79)
T cd05734 1 VTLNCSAEGYPPPT--IVWKHSKGRGHPQHTHTCCLAGRIQLLSN-----GSLLIKHVLEEDSGYYLCKVSND 66 (79)
T ss_pred CEeEeeCeEeCCCE--EEEEECCCccccccccccccCCCEEEecC-----CeEEECcCCcccCEEEEEEEEeC
Confidence 47999999988787 99998754221110 01122222222 34999999999999999999998
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=66.06 Aligned_cols=61 Identities=26% Similarity=0.464 Sum_probs=44.9
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+.+.|.|. +.|++++..+..... ........+ +.|.|.++..+|.|.|+|.+.|.
T Consensus 1 ~~L~C~v~g~P~p~--v~W~k~~~~l~~~~~--~~~~~~~~~----~~l~I~~~~~~D~G~Y~C~a~N~ 61 (76)
T cd05736 1 ASLRCHAEGIPLPR--LTWLKNGMDITPKLS--KQLTLIANG----SELHISNVRYEDTGAYTCIAKNE 61 (76)
T ss_pred CEeEeEeeecCCCE--EEEEECCEECCCCCC--ccEEEeCCC----CEEEECcCCcccCEEEEEEEEcC
Confidence 46899999987776 999999987643221 122222222 24999999999999999999998
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-10 Score=67.06 Aligned_cols=67 Identities=31% Similarity=0.438 Sum_probs=49.5
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
.++...+.+|+.++|.|.+... .+...+.|++++..+.... . ...|.|.+++.+|+|.|+|.+.+
T Consensus 5 ~~p~~~V~~G~~vtL~C~~~~~-~~~~~~~w~k~g~~~~~~~---------~-----~~~l~I~~~~~~dsG~Y~C~~~~ 69 (83)
T cd05753 5 QVPSRVVFEGEPLVLRCHGWKN-KPVYKVTYYRDGKAKKYSH---------S-----NSNLSIPQATLSDSGSYHCSGII 69 (83)
T ss_pred ECCcceecCCCCEEEEeeCCCC-CcceEEEEEECCeEccccC---------C-----CceEEECccCHHHCEEEEEEEEe
Confidence 3445578999999999998543 2334599999987653110 0 12499999999999999999998
Q ss_pred CC
Q psy13371 172 AD 173 (212)
Q Consensus 172 ~~ 173 (212)
..
T Consensus 70 ~~ 71 (83)
T cd05753 70 GS 71 (83)
T ss_pred CC
Confidence 73
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.5e-10 Score=68.26 Aligned_cols=60 Identities=23% Similarity=0.447 Sum_probs=40.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEccc-----CCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWA-----QKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.|.|.+.|+|++. .+.... +.++... .++++.|.++ +.+|+|.|.|.+.|.
T Consensus 17 v~l~C~v~g~P~p~i~W~k~g~--~l~~~~-----~~~~~~~-----~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 17 VVLNCSAEGEPPPKIEWKKDGV--LLNLVS-----DERRQQL-----PNGSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred EEEeeecccCCCCEEEEEECCe--ECcccc-----CcceEEc-----cCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 4689999999999999999773 222111 1122222 1234555554 689999999999997
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=65.35 Aligned_cols=66 Identities=26% Similarity=0.469 Sum_probs=46.7
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee-ecCCEEEEEEcccCCee
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE-LKDSGKYSCSPSNADVA 175 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~~~ 175 (212)
.|+.+.|.|.+.++|.|. +.|++++..+..... .. ....++ .|.|.++. .+|+|.|+|.|.|..+.
T Consensus 18 ~~~~~~l~C~~~g~p~p~--i~W~k~~~~l~~~~~--~~-~~~~~~-----~L~i~~~~~~~d~G~Y~C~a~N~~G~ 84 (91)
T cd04967 18 DEGKVSLNCRARGSPPPT--YRWLMNGTEIDDEPD--SR-YSLVGG-----NLVISNPSKAKDAGRYQCLASNIVGT 84 (91)
T ss_pred CCCEEEEEEeeeEcCCCE--EEEEECCEECCCCCC--CC-EEEECC-----EEEEecCCccCCCEEEEEEEEcCCCE
Confidence 346799999999887666 999999987632211 11 122222 38888776 48999999999998543
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-10 Score=67.77 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=49.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee-ecce----eeecCCceEEEee-CCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT-VGSY----TYTSDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~----~~~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|.+++.+.+.+.|++.+...+.. .+.. .....+|+..... ...++++|+|.+++.+|+|.|+|.+.+.
T Consensus 10 VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~ 87 (94)
T cd07690 10 AELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVEDK 87 (94)
T ss_pred EEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECCc
Confidence 469999999999999999655221111 0110 0012456665531 2446788999999999999999999874
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=66.57 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=49.4
Q ss_pred CeeEeeeCCCCCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCC--CCeEEEEEcccCCCC-CEEEEEEecCC-Cce
Q psy13371 1 MLHQRKLKGLLPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRRE--GDEWTLHIKWAQKRD-AGVYECQLSTQ-PVR 75 (212)
Q Consensus 1 ~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~i~~~~~~d-~G~Y~C~~~~~-~~~ 75 (212)
+.|.|.+.|.|.| .|.|++++. .+... .+.|+.+..... .....|+|.++..+| .|.|.|.+.|. +..
T Consensus 19 v~L~C~~~g~P~P~~v~W~~~~~--~i~~~-----~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~ 91 (98)
T cd05758 19 GRVECFIFSTPPPDRIVWTWKEN--ELESG-----SSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG 91 (98)
T ss_pred EEEEEEEcccCCCCEeEEEECCE--EccCC-----CCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc
Confidence 3699999999999 699999773 22211 124666653221 123579999999955 99999999986 444
Q ss_pred eEEEE
Q psy13371 76 SFFVN 80 (212)
Q Consensus 76 ~~~~~ 80 (212)
...+.
T Consensus 92 ~~~~~ 96 (98)
T cd05758 92 TAIIS 96 (98)
T ss_pred cEEEE
Confidence 44433
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.1e-09 Score=63.81 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=62.4
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC-
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA- 172 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~- 172 (212)
....+.+|+.+.|.|.+.+.|.|. .+.|.+++..+...... ..........+..+.|.+.++..++.|.|+|.|.|+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~-~~~W~~~~~~l~~~~~~-~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~ 88 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPE-HQQWIYMNRTLTNTSDH-YVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCe-eeEEEcCCcccCccccc-eeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence 346789999999999999997664 47999988765432221 111222233457788999999999999999999998
Q ss_pred CeeEEEEEE
Q psy13371 173 DVASVYVHV 181 (212)
Q Consensus 173 ~~~~~~~~v 181 (212)
...+..+.+
T Consensus 89 ~~~s~tF~l 97 (101)
T cd05860 89 ASASVTFNV 97 (101)
T ss_pred CeEEEEEEE
Confidence 555555544
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=63.57 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=43.6
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee----ecCCEEEEEEcccCCeeE
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE----LKDSGKYSCSPSNADVAS 176 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~C~~~n~~~~~ 176 (212)
+.|.|.+.|.|.|. +.|++++..+..... ........+ ..|.|..+. .+|+|.|+|.|.|..+..
T Consensus 1 ~~l~C~~~G~P~P~--v~W~k~g~~~~~~~~--~~~~~~~~~----~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 1 IIIECEAKGNPVPT--FQWTRNGKFFNVAKD--PRVSMRRRS----GTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred CEEEEeccccCCCE--EEEEECCEEccCcCC--CcEEEeCCC----ceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 46899999998887 999999986632221 122222111 248887653 246999999999985543
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=65.91 Aligned_cols=59 Identities=20% Similarity=0.387 Sum_probs=42.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC-CCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.|.+.|++++. .+... .+.++.+. +.+|.|.++. .+|+|.|.|.+.|.
T Consensus 22 v~l~C~a~g~P~p~i~W~~~g~--~l~~~-----~~~~~~~~------~g~L~I~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05850 22 VTLGCRARASPPATYRWKMNGT--EIKFA-----PESRYTLV------AGNLVINNPQKARDAGSYQCLAINR 81 (94)
T ss_pred EEEEeEceeCCCCEEEEEECCE--ECccC-----CCceEEEE------CCeEEEccCCccCcCEEEEEEEEcC
Confidence 3699999999999999999773 22211 12244432 2368887755 69999999999996
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-08 Score=68.00 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=71.4
Q ss_pred eeEeeeCC---CCCceEEEEeeCc---ceeeee-cce----eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 2 LHQRKLKG---LLPTRVSWIRHRD---IHILTV-GSY----TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 2 ~l~C~~~~---~p~~~v~W~~~~~---~~~~~~-~~~----~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
.|+|..+. .+...|.|+|..+ ...+.. +.. .+...+|+.+.+ ..++.+|.|.+++.+|.|.|+|.++
T Consensus 30 ~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~--~~gnvsLvI~~l~lSDdGtY~C~fQ 107 (221)
T PHA03376 30 TLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTAANISHDGNYLCRMK 107 (221)
T ss_pred EEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEe--cCCeEEEEEEeeeecCCceEEEEEE
Confidence 58888762 2567999999532 122221 111 123346666653 3488999999999999999999999
Q ss_pred CCCcee-EEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe
Q psy13371 71 TQPVRS-FFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE 127 (212)
Q Consensus 71 ~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~ 127 (212)
.+.... ..-.|++..|-.+...........-+...+.|...+.|+|. +.|.-+..
T Consensus 108 kge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~--~~Wle~~~ 163 (221)
T PHA03376 108 LGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPH--VQWLMPEG 163 (221)
T ss_pred cCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCch--heeccccC
Confidence 753222 22223322211111111000112245678999977777777 99986543
|
|
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=63.49 Aligned_cols=64 Identities=25% Similarity=0.441 Sum_probs=42.7
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee----cCCEEEEEEcccCCee
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL----KDSGKYSCSPSNADVA 175 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~~~ 175 (212)
+.|.|.+.|.|.|. +.|++++.++...... ........+ .|.|..+.. .|.|.|+|.|.|..+.
T Consensus 1 ~~l~C~a~G~P~P~--i~W~k~g~~l~~~~~~-~~~~~~~~g-----~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05874 1 IVIQCEAKGKPPPS--FSWTRNGTHFDIDKDP-KVTMKPNTG-----TLVINIMNGEKAEAYEGVYQCTARNERGA 68 (77)
T ss_pred CEEEeeCcccCCCe--EEEEECCeECCCcCCC-CEEEeCCCc-----eEEEeccccCCCCCCCEEEEEEEEcCCCe
Confidence 47899999998777 9999999876322211 111111222 377766653 3789999999998443
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.2e-10 Score=64.91 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=43.7
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee----cCCEEEEEEcccCCee
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL----KDSGKYSCSPSNADVA 175 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~~~ 175 (212)
+.|.|.+.|.|.|. +.|++++..+..... ......... ..|.|.++.. +|+|.|+|.|.|..+.
T Consensus 1 i~l~C~~~G~P~P~--v~W~k~g~~l~~~~~--~~~~~~~~~----g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05733 1 IVIKCEAKGNPPPT--FSWTRNGTHFDPEKD--PRVTMKPDS----GTLVIDNMNGGRAEDYEGEYQCYASNELGT 68 (77)
T ss_pred CEEEeeCcccCCCe--EEEEECCeECCCCCC--CCEEEeCCC----CEEEEeccCCCCCcCCCEEEEEEEEcCCCc
Confidence 47899999988777 999999987743221 112221111 2488877643 7899999999998543
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-09 Score=65.13 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=52.6
Q ss_pred CeeEeeeCCC---CCceEEEEeeCcceeeee--cceee------ecCCceEEEee-CCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL---LPTRVSWIRHRDIHILTV--GSYTY------TSDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~---p~~~v~W~~~~~~~~~~~--~~~~~------~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|+|.+.+. ....+.|+|......... ..... ...+|+.+..+ ...++++|+|.+++.+|+|.|+|.
T Consensus 4 v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 83 (100)
T cd05713 4 AELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLYTCF 83 (100)
T ss_pred EEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEEEEE
Confidence 4699999743 235799998764332211 11000 11257766532 245678999999999999999999
Q ss_pred ecCCC-ceeEEEEEEE
Q psy13371 69 LSTQP-VRSFFVNLNV 83 (212)
Q Consensus 69 ~~~~~-~~~~~~~l~v 83 (212)
+.+.+ ..+..+.|+|
T Consensus 84 v~~~~~~~~~~i~l~v 99 (100)
T cd05713 84 FQSDGFYEEATVELKV 99 (100)
T ss_pred EecCCcEEEEEEEEEE
Confidence 99753 3444455544
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-09 Score=62.64 Aligned_cols=70 Identities=27% Similarity=0.410 Sum_probs=49.7
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.+..|+.+.|.|.+.+.|.+. +.|++++..+..... ... .........|.|.++..+|.|.|.|.+.|..
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~--v~W~k~~~~~~~~~~----~~~-~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~ 74 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPT--ITWLKDGKPFKKEHR----IGG-YKVRKKKWTLILESVVPSDSGKYTCIVENKY 74 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCe--EEEEECCEECcccCc----eeE-EEccCcEEEEEEeECCcccCEEEEEEEEECC
Confidence 466799999999998876555 999999876632211 111 1111122458999999999999999999973
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=64.58 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=48.7
Q ss_pred eeeeCCCcEEEEeEEeeCCC---CCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKYSPE---PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~---p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+..|....|.|...+.+. |.+.+.|++++.++... .... ... ..|.|.++..+|+|.|+|.+.|.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~----~~~~-~~~-----~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD----RKRF-VKG-----SKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC----ccEE-ecC-----CEEEEeeCChhhCEEEEEEEEec
Confidence 35778999999998754321 34459999999887421 1111 122 24999999999999999999986
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-09 Score=63.69 Aligned_cols=71 Identities=14% Similarity=0.338 Sum_probs=48.4
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.+.+.|.+.+.|+|++. .+.. +.++.... .......|.|.++..+|+|.|.|.+.+. +.....+.
T Consensus 13 ~l~C~~~~~p~~~v~W~k~~~-~~~~--------~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 13 RLKCPASGNPRPTITWLKDGK-PFKK--------EHRIGGYK-VRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred EEEEEcCCCCCCeEEEEECCE-ECcc--------cCceeEEE-ccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 689999999999999999763 2211 11122111 1234568999999999999999999985 33444444
Q ss_pred EE
Q psy13371 81 LN 82 (212)
Q Consensus 81 l~ 82 (212)
|+
T Consensus 83 l~ 84 (85)
T cd05729 83 VD 84 (85)
T ss_pred Ee
Confidence 43
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=65.61 Aligned_cols=70 Identities=27% Similarity=0.384 Sum_probs=50.7
Q ss_pred eeeeCCCcEEEEeEEe-eCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 96 LHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+.+|+.+.|.|... +.|.| .+.|++++.+..... ...+.....+|. |.|.+++.+|+|.|+|.|+|..
T Consensus 13 ~~v~eG~~~~L~C~pP~g~P~p--~~~W~k~~~~~~~~~-d~r~~~~~~~G~-----L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 13 VKVKEGWGVVLFCDPPPHYPDL--SYRWLLNEFPNFIPE-DGRRFVSQTNGN-----LYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred eeeeeCCcEEEeeCCCCCCCCC--EEEEEECCccccccc-CCCeEEeCCCCc-----EEEeecCHhhCceeEEEEEecc
Confidence 4688899999999775 44444 499999986542221 122333333554 9999999999999999999873
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-09 Score=65.17 Aligned_cols=73 Identities=16% Similarity=0.313 Sum_probs=48.2
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|+|.... .....+.|+|.....+.... ......+++|..+-.....+++|+|.+++.+|+|.|.|.+...+
T Consensus 7 VtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~ 84 (97)
T cd05775 7 VTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINTKN 84 (97)
T ss_pred EEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEcCC
Confidence 468998876 56779999997643332222 11112233443332234457899999999999999999998754
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.2e-09 Score=63.05 Aligned_cols=77 Identities=23% Similarity=0.425 Sum_probs=50.2
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC----CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS----RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
....+.+|+.++|.|.+.+.+.+. +.|++.++....... ...++...... .....|.|.+++.+|+|.|+|.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~--v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSS--LQWSNPNQQTLYFNDKRALRDNRIQLVNFS-ANELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCce--EEEeCCCCcEEEeccccccccCcEEEEcCC-CCeeEEEEccCCcccCEEEEEEE
Confidence 456789999999999997765555 999864432211110 11222221111 12246999999999999999999
Q ss_pred ccCC
Q psy13371 170 SNAD 173 (212)
Q Consensus 170 ~n~~ 173 (212)
.+..
T Consensus 82 ~~~~ 85 (95)
T cd05717 82 YTMP 85 (95)
T ss_pred ecCC
Confidence 8763
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.5e-09 Score=64.03 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=53.0
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcce---eee---e--cceee-ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIH---ILT---V--GSYTY-TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~---~~~---~--~~~~~-~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|+|.....+ ...|.|+|..... .+. . +.... ...+|..+..+...++++|+|.+++.+|+|.|.|.
T Consensus 3 v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~ 82 (100)
T cd05888 3 TRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKCR 82 (100)
T ss_pred EEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEEE
Confidence 46999997654 4589999854321 111 0 11111 11256666644456788999999999999999999
Q ss_pred ecCC--CceeEEEEEEE
Q psy13371 69 LSTQ--PVRSFFVNLNV 83 (212)
Q Consensus 69 ~~~~--~~~~~~~~l~v 83 (212)
+.+. +..+..+.|.|
T Consensus 83 v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 83 VITFPAGNFEAELVLTV 99 (100)
T ss_pred EEeCCCCCeeeEEEEEe
Confidence 8873 33445555554
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=64.79 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=47.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~ 78 (212)
+.|.|.+.+ |.+.+.|+|++.. +..... ...++... ...|.|.+++.+|+|.|.|.+.+.. .....
T Consensus 14 v~L~C~~~~-p~~~i~W~k~~~~-~~~~~~----~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 14 VFLECSPKS-NLASVVWLFQGGP-LQRKEE----PEERLLVT------EDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred EEEEEeCCC-CCceEEEEECCcc-cccccC----cCceEEEc------CCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 469999987 8889999998742 111100 11233332 1258899999999999999998753 33444
Q ss_pred EEEEEe
Q psy13371 79 VNLNVV 84 (212)
Q Consensus 79 ~~l~v~ 84 (212)
..|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 455543
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-09 Score=66.19 Aligned_cols=72 Identities=25% Similarity=0.244 Sum_probs=52.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+.+.+.|+|...... ..... ......+|+.+..+...+.++|+|.+++.+|+|.|.|.+.+.
T Consensus 16 v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 92 (109)
T cd04983 16 VTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES 92 (109)
T ss_pred EEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 3689999988889999998753211 11110 011245788887555668899999999999999999998864
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=63.65 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=54.9
Q ss_pred CeeEeeeCCCC------------CceEEEEeeCcc---ee-eeecceee---ecCCceEEEee-CCCCeEEEEEcccCCC
Q psy13371 1 MLHQRKLKGLL------------PTRVSWIRHRDI---HI-LTVGSYTY---TSDQRFSAIHR-REGDEWTLHIKWAQKR 60 (212)
Q Consensus 1 ~~l~C~~~~~p------------~~~v~W~~~~~~---~~-~~~~~~~~---~~~~r~~~~~~-~~~~~~~L~i~~~~~~ 60 (212)
+.|+|.+.... .+.|.|+|.... .+ ...+.... ...+|+++..+ ...++++|+|.+++.+
T Consensus 5 VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl~~s 84 (112)
T cd05900 5 LLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITELRSN 84 (112)
T ss_pred EEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeecccc
Confidence 46899998653 469999986421 11 11222111 11247777642 2557899999999999
Q ss_pred CCEEEEEEecCC-CceeEEEEEEEe
Q psy13371 61 DAGVYECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 61 d~G~Y~C~~~~~-~~~~~~~~l~v~ 84 (212)
|+|.|+|.+..+ ...+..+.|.|.
T Consensus 85 DsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 85 DSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cCEEEEEEEecCCCCceeEEEEEEE
Confidence 999999999876 445555555553
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=63.28 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=43.0
Q ss_pred CeeEeeeCCCCC-ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEE
Q psy13371 1 MLHQRKLKGLLP-TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 79 (212)
+.|.|.+.+.|. +.+.|+|++. .+.. ....|.|.++ .+|+|.|+|++.+. ..+..+
T Consensus 18 V~L~C~~~~~p~~~~~~W~kng~--~l~~-------------------~~~~l~i~~~-~~dsG~Y~C~a~~~-~~S~~v 74 (78)
T cd05752 18 VTLTCNGFNSPEQNSTQWYHNGK--LLET-------------------TTNSYRIRAA-NNDSGEYRCQTQGS-SLSDPV 74 (78)
T ss_pred EEEEEeCCCCCCCccEEEEECCE--Eeec-------------------cCCeEEEeec-ccCCEEeEEECCCC-cCCCCE
Confidence 469999999875 5799999873 2210 1237888899 99999999999875 345555
Q ss_pred EEE
Q psy13371 80 NLN 82 (212)
Q Consensus 80 ~l~ 82 (212)
.|+
T Consensus 75 ~l~ 77 (78)
T cd05752 75 HLE 77 (78)
T ss_pred EEe
Confidence 554
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-09 Score=64.33 Aligned_cols=73 Identities=22% Similarity=0.421 Sum_probs=54.4
Q ss_pred CceeeeCCCcEEEEeE-EeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCE-EEEEEccc
Q psy13371 94 PDLHVDEGSTINLTCS-IKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSG-KYSCSPSN 171 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~-~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n 171 (212)
....+.+|+.+.|.|. ..+.|.|. +.|+.++..... ...+.....+|. |.|.+++.+|+| .|.|.|.|
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~--i~W~~~~~~~i~---~~~Ri~~~~~Gn-----L~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLR--IYWMNSDLLHIT---QDERVSMGQNGN-----LYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCE--EEEECCCCcccc---ccccEEECCCce-----EEEEEEehhhCCCCeEEEEEc
Confidence 4567899999999997 57777777 999976644321 123444545554 999999999999 89999998
Q ss_pred CCeeE
Q psy13371 172 ADVAS 176 (212)
Q Consensus 172 ~~~~~ 176 (212)
.....
T Consensus 81 ~~~~~ 85 (95)
T cd05845 81 PGLRT 85 (95)
T ss_pred ccccc
Confidence 85433
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-09 Score=62.82 Aligned_cols=70 Identities=21% Similarity=0.397 Sum_probs=50.7
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
..|....+.+|+.++|.|.+.+.+ |...+.|++++..+.. . ..... ..|.|.++..+|+|.|.|.+.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~-~~~~i~W~~~~~~~~~----~---~~~~~-----~~L~I~~v~~~DsG~Y~C~a~ 72 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKS-PAYTLVWTRVGGGLPS----R---AMDFN-----GILTIRNVQLSDAGTYVCTGS 72 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCC-CCcEEEEEECCCcCCC----c---ccccC-----CEEEECCCCHHHCEEEEEEEe
Confidence 345566789999999999987532 3345999998865311 1 01111 249999999999999999999
Q ss_pred cCC
Q psy13371 171 NAD 173 (212)
Q Consensus 171 n~~ 173 (212)
|..
T Consensus 73 n~~ 75 (85)
T cd05754 73 NML 75 (85)
T ss_pred ccC
Confidence 973
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-09 Score=59.80 Aligned_cols=64 Identities=28% Similarity=0.548 Sum_probs=42.1
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
|+.++|.|.+... .+...+.|.++++..... ........+......|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~-~~~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSG-PPPTTVTWSKNGQSLPEG----STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEES-SSTSEEEEEETTTTTSEE----EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCC-CCCcEEEEEECCccccCc----ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999333 355569999988644211 111112222222224999999999999999985
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=61.80 Aligned_cols=82 Identities=17% Similarity=0.115 Sum_probs=53.8
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecce------ee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSY------TY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~------~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|+|..... ...+|+|.|..+........+ .+ ...+|..+. +....+.+|.|.+++.+|+|.|+|.+.+
T Consensus 3 vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 3 VTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred EEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 4799999854 456999988643211111111 00 112566665 3556789999999999999999999988
Q ss_pred C--CceeEEEEEEE
Q psy13371 72 Q--PVRSFFVNLNV 83 (212)
Q Consensus 72 ~--~~~~~~~~l~v 83 (212)
. +..+....|.|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 5 44555555554
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.6e-09 Score=63.51 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=48.5
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeC----------CCCceeEEee-cCceEEEEEEEeeeeecCCEEE
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS----------SRGGVSVITE-KGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y 165 (212)
.+.+|+.++|.|.+.+.+.+. +.|+++++...... ....+..... ........|.|++++.+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~--i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQ--FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcE--EEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 567899999999998765555 99997653321100 0011111111 0011235699999999999999
Q ss_pred EEEcccCCe
Q psy13371 166 SCSPSNADV 174 (212)
Q Consensus 166 ~C~~~n~~~ 174 (212)
.|.+.|...
T Consensus 81 ~C~v~~~~~ 89 (94)
T cd07690 81 ICEVEDKKE 89 (94)
T ss_pred EEEECCccc
Confidence 999998743
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.2e-09 Score=62.26 Aligned_cols=57 Identities=25% Similarity=0.256 Sum_probs=41.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+ +.+.+.|++++. .+... +.|+.+. +..|.|.+++.+|+|.|+|.+.+.
T Consensus 14 v~L~C~~~~-~~~~i~W~~ng~--~i~~~------~~r~~~~------~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 14 AELKCSPKS-NLARVVWKFDGK--VLTPE------SAKYLLY------RDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred EEEEEECCC-CCCeEEEEECCE--ECCCC------CceEEEE------CCcEEEeCCCHHHCEEEEEEEEec
Confidence 468999865 678999999873 22211 1344432 236999999999999999999876
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=61.51 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=53.0
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcce--eeee----cceeeec--CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIH--ILTV----GSYTYTS--DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~--~~~~----~~~~~~~--~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
|.|.|..... ...+|+|.|..+.. .+.. .+..+.. .+|..... ....+.+|.|.+++.+|+|.|+|.+.+
T Consensus 3 vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~-~~~~d~sI~i~nvt~~D~G~Y~C~~~t 81 (96)
T cd05889 3 MKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLN-STREDMSLSFNNATEEDVGLYCCSLVT 81 (96)
T ss_pred EEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEec-CCCCccEEEEcCCCcccCEEEEEEEEe
Confidence 6799998754 46789999865311 1111 0111111 25666652 344678999999999999999999998
Q ss_pred CCceeEEEEEEE
Q psy13371 72 QPVRSFFVNLNV 83 (212)
Q Consensus 72 ~~~~~~~~~l~v 83 (212)
.+..+....+.|
T Consensus 82 ~P~g~~~~~i~~ 93 (96)
T cd05889 82 YPQGSWEKVIEV 93 (96)
T ss_pred CCCCCeEEEEEE
Confidence 654555444444
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=62.03 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=53.1
Q ss_pred CeeEeeeCCC-CC---ceEEEEeeCccee--e-eecc---eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL-LP---TRVSWIRHRDIHI--L-TVGS---YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~-p~---~~v~W~~~~~~~~--~-~~~~---~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+... |. .+|+|.+..+... . .... ... ...+|..+. +...++++|.|.+++.+|+|.|.|+
T Consensus 3 v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 3 VVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFK-NPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred EEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEc-CCCCCcceEEEcCCccccCEEEEEE
Confidence 3699999853 21 2799988532111 1 1110 011 112677765 3456889999999999999999999
Q ss_pred ecCC--CceeEEEEEEE
Q psy13371 69 LSTQ--PVRSFFVNLNV 83 (212)
Q Consensus 69 ~~~~--~~~~~~~~l~v 83 (212)
+.+. +..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 9984 45566666665
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=62.78 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=52.6
Q ss_pred CeeEeeeCCCC------CceEEEEeeC--c--ce-eee-ecceee-ecC--CceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGLL------PTRVSWIRHR--D--IH-ILT-VGSYTY-TSD--QRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~p------~~~v~W~~~~--~--~~-~~~-~~~~~~-~~~--~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.+...+ .+.|.|+|.. . .. +.. .+.... ... .|+... ....++.+|+|.+++.+|+|.|
T Consensus 5 V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD~G~Y 83 (106)
T cd05714 5 VTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLEDSGRY 83 (106)
T ss_pred EEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHHCEEE
Confidence 46999988753 5799999973 1 11 111 111111 111 233222 2355789999999999999999
Q ss_pred EEEecCC-CceeEEEEEEEe
Q psy13371 66 ECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 66 ~C~~~~~-~~~~~~~~l~v~ 84 (212)
.|.+.+. ......+.|.|.
T Consensus 84 ~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 84 RCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEcCCCceEEEEEEEEE
Confidence 9999976 344666666664
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-08 Score=63.68 Aligned_cols=72 Identities=11% Similarity=0.209 Sum_probs=49.3
Q ss_pred CeeEeeeCCC----CCceEEEEee-Ccce----eeee-cceeee-c----CCceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGL----LPTRVSWIRH-RDIH----ILTV-GSYTYT-S----DQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~----p~~~v~W~~~-~~~~----~~~~-~~~~~~-~----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.++.. +...|.|.+. .... +... ++..+. . .+|..+..+...++.+|.|.+++.+|.|.|
T Consensus 16 v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y 95 (116)
T cd05879 16 VTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTDNGTF 95 (116)
T ss_pred EEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCcccCEEE
Confidence 4699999774 3579999542 2111 1111 122221 1 258887766677899999999999999999
Q ss_pred EEEecCC
Q psy13371 66 ECQLSTQ 72 (212)
Q Consensus 66 ~C~~~~~ 72 (212)
+|.+.+.
T Consensus 96 ~C~v~n~ 102 (116)
T cd05879 96 TCDVKNP 102 (116)
T ss_pred EEEEEcC
Confidence 9999985
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-08 Score=62.24 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=55.9
Q ss_pred CeeEeeeCCCC----------CceEEEEeeCcc-ee--e-eecceee---ecCCceEEEee-CCCCeEEEEEcccCCCCC
Q psy13371 1 MLHQRKLKGLL----------PTRVSWIRHRDI-HI--L-TVGSYTY---TSDQRFSAIHR-REGDEWTLHIKWAQKRDA 62 (212)
Q Consensus 1 ~~l~C~~~~~p----------~~~v~W~~~~~~-~~--~-~~~~~~~---~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~ 62 (212)
+.|+|.+...+ ...|.|+|.... .. . ..+.... ...+|+++..+ ...++++|+|.+++.+|+
T Consensus 5 V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~sD~ 84 (110)
T cd05878 5 VLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRSSDS 84 (110)
T ss_pred EEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCChhhC
Confidence 47999997754 368999996421 11 1 1122211 11357777532 345778999999999999
Q ss_pred EEEEEEecCC-CceeEEEEEEEe
Q psy13371 63 GVYECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 63 G~Y~C~~~~~-~~~~~~~~l~v~ 84 (212)
|.|.|.+... ...+..+.|.|.
T Consensus 85 G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 85 GVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred EEEEEEEEeCCCcceEEEEEEEE
Confidence 9999999875 456677777765
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-08 Score=62.59 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=53.4
Q ss_pred CeeEeeeCCCC------CceEEEEeeCcce----e-eeecce--ee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGLL------PTRVSWIRHRDIH----I-LTVGSY--TY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~p------~~~v~W~~~~~~~----~-~~~~~~--~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.++..| ...|.|+|..... . ...... .. ...+|+.+.. ...++.+|+|.+++.+|+|.|
T Consensus 5 vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~DsG~Y 83 (106)
T cd05877 5 VTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR-AHDLDASLVITDLRLEDYGRY 83 (106)
T ss_pred EEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC-CCCCcEEEEEccCChHHCEEE
Confidence 46999987653 4679999975311 1 111111 00 1135777643 335678999999999999999
Q ss_pred EEEecCC-CceeEEEEEEEe
Q psy13371 66 ECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 66 ~C~~~~~-~~~~~~~~l~v~ 84 (212)
.|.+.++ +.....+.|.|.
T Consensus 84 ~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 84 RCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEecccceEEEEEEEEE
Confidence 9999875 345555666654
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=61.48 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=47.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~ 78 (212)
+.|.|.. +.|.|.+.|+|.++....... ...+.|+... +.+|.|.++.++|+|.|.|.+.+.. .....
T Consensus 14 v~L~C~~-~~p~p~v~Wykq~~g~~~~~~---~~~~~r~~~~------~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 14 TFLECLP-KSPQASVKWLFQRGGDQRKEE---VKTEERLIHT------ERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred EEEEEEC-CCCCceEEEEEECCCCCcccc---ccccccEEEe------cCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 4699996 578899999986532111100 0112344432 2469999999999999999998532 22334
Q ss_pred EEEEEe
Q psy13371 79 VNLNVV 84 (212)
Q Consensus 79 ~~l~v~ 84 (212)
+.|.|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 555554
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=61.77 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=51.4
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcce--eee-e---cceeee--cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIH--ILT-V---GSYTYT--SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~--~~~-~---~~~~~~--~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+...+ ...|.|+|..... .+. . .+.... ..+|..+.. ...++.+|+|.+++.+|+|.|.|.+
T Consensus 3 v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~v 81 (98)
T cd05718 3 VTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLN-SSLEDATISISNLRLEDEGNYICEF 81 (98)
T ss_pred EEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeC-CCCCceEEEEccCCcccCEEEEEEE
Confidence 46999998764 4589999976421 110 0 000011 134554442 1226789999999999999999998
Q ss_pred cCC--CceeEEEEEEE
Q psy13371 70 STQ--PVRSFFVNLNV 83 (212)
Q Consensus 70 ~~~--~~~~~~~~l~v 83 (212)
... +.....+.|.|
T Consensus 82 ~~~~~g~~~~~~~l~V 97 (98)
T cd05718 82 ATFPQGNRQKVTTLTV 97 (98)
T ss_pred EeCCCCcEEEEEEEEe
Confidence 753 44555555555
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.9e-09 Score=57.96 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=40.1
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+ .+.+...+.|+|++.......... ...+.......|.|.+++.+|+|.|+|.+
T Consensus 4 v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~---------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 4 VTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTN---------RSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEEEEEEESSSTSEEEEEETTTTTSEEEEEE---------EEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred EEEEeecCCCCCCcEEEEEECCccccCcceeE---------eecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 4699999 777889999999885333221111 11001111114999999999999999985
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=59.08 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=43.5
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|...+. |.+.|.|||++. .+.........+.+++.. ..|++.-...+|.+.|+|++.|.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~--~l~~~~~~~~~~~~~t~~-------s~L~~~~~~~Ddg~~~~C~A~n~ 65 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRK--ELKGVISQQENGKTVSVS-------NTIRFPVDRKDDGAILSCEASHP 65 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCE--ECCCCcccccCCceEEEE-------EEEEEEeeeccCCcEEEEEEECh
Confidence 3689998886 899999999883 332111111112233333 36899889999999999999985
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-09 Score=62.94 Aligned_cols=58 Identities=26% Similarity=0.403 Sum_probs=41.8
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC-CCCCEEEEEEecCC
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~ 72 (212)
.|.|.+.|.|.|.+.|+|++. .+.... +.++... +..|.|.++. .+|+|.|+|.+.|.
T Consensus 23 ~l~C~~~g~p~p~i~W~k~~~-~l~~~~------~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 23 SLNCRARGSPPPTYRWLMNGT-EIDDEP------DSRYSLV------GGNLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred EEEEeeeEcCCCEEEEEECCE-ECCCCC------CCCEEEE------CCEEEEecCCccCCCEEEEEEEEcC
Confidence 689999999999999999773 221111 2233332 2378888876 49999999999985
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-08 Score=58.85 Aligned_cols=59 Identities=34% Similarity=0.680 Sum_probs=46.2
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+.+|+.+.|.|.+.+.|. ..+.|++++..+.... + .+.+.++..+|.|.|+|.+.+.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~--~~~~w~~~~~~~~~~~-----------~-----~~~~~~~~~~~~g~y~C~~~~~ 67 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPP--PQVQWYKNGSPINSSQ-----------N-----GLFIPNVSPEDSGNYTCRASNG 67 (80)
T ss_dssp SEEETTSEEEEEEEEESSSS--SEEEEEETTEEEEEES-----------S-----EEEESSEEGGGTEEEEEEEEET
T ss_pred eEEeCCCcEEEEEEEEcccc--eeeeeeeeeeeeeeee-----------e-----eeeeeeeccccCEEEEEEEEeC
Confidence 45889999999999986654 4599999887664211 1 1666888999999999999986
|
... |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.8e-08 Score=61.56 Aligned_cols=81 Identities=17% Similarity=0.297 Sum_probs=50.8
Q ss_pred CCCceeeeCCCcEEEEeEEeeCC--CCCceEEEEEcCe------EE-Eee---------CCCCceeEEeecCceEEEEEE
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSP--EPPAYIFWYHHDE------VI-SYD---------SSRGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~--~p~~~v~W~~~~~------~~-~~~---------~~~~~~~~~~~~~~~~~~~l~ 153 (212)
.+....+..|+.+.|.|...... .+...+.|..... .+ .+. ....++.....+......++.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 34567889999999999997543 2345799954311 01 011 011112222222222335699
Q ss_pred EeeeeecCCEEEEEEcccC
Q psy13371 154 IQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~ 172 (212)
|.+++.+|.|.|+|.+.|+
T Consensus 84 I~nv~~sD~G~Y~C~v~n~ 102 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNP 102 (116)
T ss_pred EccCCcccCEEEEEEEEcC
Confidence 9999999999999999986
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=60.35 Aligned_cols=69 Identities=23% Similarity=0.367 Sum_probs=48.3
Q ss_pred CeeEeeeCCCCC--ceEEEEeeCcce----eeeec--ceee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLLP--TRVSWIRHRDIH----ILTVG--SYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p~--~~v~W~~~~~~~----~~~~~--~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+... ..+.|++..... +.... ...+ ...+|+.+..+...+..+|+|.+++.+|+|.|.|.+
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 468999988765 389999876311 11111 1111 224788887655578899999999999999999964
|
|
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.4e-09 Score=57.31 Aligned_cols=61 Identities=33% Similarity=0.681 Sum_probs=44.2
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+|+.+.|.|.+.+.+.+. +.|++++..+. .. . ...... ..|.|.++...|.|.|+|.+.|.
T Consensus 1 ~g~~~~l~C~~~~~~~~~--v~W~~~~~~~~----~~-~-~~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPN--ITWLKDGKPLP----ES-N-RLSASG----STLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred CCceEEEEeeCccCCCCe--EEEEECCEECC----CC-C-EEecCC----cEEEEeeCCcccCEEEEEEEecC
Confidence 478899999976665555 99999887663 11 1 111111 24999999999999999999875
|
|
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=61.54 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=46.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeee-c----ceeeec----CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTV-G----SYTYTS----DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~----~~~~~~----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+...+...|.|++......... . ...... .+|+.+. .+++|+|.+++.+|+|.|.|.+..
T Consensus 4 VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~~l~~~DsG~Y~c~v~~ 78 (92)
T cd05741 4 VTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY-----PNGSLLIQNLTKEDSGTYTLQIIS 78 (92)
T ss_pred EEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc-----CCceEEEccCCchhcEEEEEEEEc
Confidence 4689999887788999999764221111 0 111111 2455554 338999999999999999999987
Q ss_pred CC
Q psy13371 72 QP 73 (212)
Q Consensus 72 ~~ 73 (212)
..
T Consensus 79 ~~ 80 (92)
T cd05741 79 TN 80 (92)
T ss_pred CC
Confidence 64
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.6e-08 Score=60.48 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=54.8
Q ss_pred CeeEeeeCCCC-----------CceEEEEeeC--------c-cee-eeecceee---ecCCceEEEeeC-CCCeEEEEEc
Q psy13371 1 MLHQRKLKGLL-----------PTRVSWIRHR--------D-IHI-LTVGSYTY---TSDQRFSAIHRR-EGDEWTLHIK 55 (212)
Q Consensus 1 ~~l~C~~~~~p-----------~~~v~W~~~~--------~-~~~-~~~~~~~~---~~~~r~~~~~~~-~~~~~~L~i~ 55 (212)
+.|+|.+.-.| .+.|.|.+-. . ..+ ...++... ...+|.++..+. ..++.+|+|.
T Consensus 5 v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL~i~ 84 (117)
T cd05901 5 VVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASLTIV 84 (117)
T ss_pred EEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEEEEc
Confidence 36899998443 3599999851 0 111 11222111 123677776432 4578999999
Q ss_pred ccCCCCCEEEEEEecCC-CceeEEEEEEEe
Q psy13371 56 WAQKRDAGVYECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 56 ~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 84 (212)
+++.+|+|.|.|++..+ ...+..+.|.|.
T Consensus 85 ~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 85 KLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999999875 345566666654
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=62.02 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=54.9
Q ss_pred CeeEeeeCCCC-------CceEEEEeeCc----cee--e-eecceee---ecCCceEEEeeC-CCCeEEEEEcccCCCCC
Q psy13371 1 MLHQRKLKGLL-------PTRVSWIRHRD----IHI--L-TVGSYTY---TSDQRFSAIHRR-EGDEWTLHIKWAQKRDA 62 (212)
Q Consensus 1 ~~l~C~~~~~p-------~~~v~W~~~~~----~~~--~-~~~~~~~---~~~~r~~~~~~~-~~~~~~L~i~~~~~~d~ 62 (212)
+.|+|.++-.| .+.|.|.|... ... . ..+.... ...+|.++..+. ..++.+|+|.+++.+|+
T Consensus 5 v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~ 84 (110)
T cd05902 5 VLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRYSDS 84 (110)
T ss_pred EEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCHHHC
Confidence 46999976432 47999998631 111 1 0111111 223677776432 45789999999999999
Q ss_pred EEEEEEecCC-CceeEEEEEEEe
Q psy13371 63 GVYECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 63 G~Y~C~~~~~-~~~~~~~~l~v~ 84 (212)
|.|.|.+..+ ...+..+.|.|.
T Consensus 85 G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 85 GTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred EEEEEEEEECCcccEEEEEEEEE
Confidence 9999999875 345666667664
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.3e-09 Score=61.89 Aligned_cols=55 Identities=25% Similarity=0.226 Sum_probs=41.4
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+ .|.+.+.|++++.. ++. +. ...+..|.|.+++.+|+|.|.|.+.|.
T Consensus 19 v~L~C~~~~~~~~~~i~W~~~~~~--~~~---------~~------~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 19 VSFICRAKSKSPAYTLVWTRVGGG--LPS---------RA------MDFNGILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred EEEEEEcCCCCCCcEEEEEECCCc--CCC---------cc------cccCCEEEECCCCHHHCEEEEEEEecc
Confidence 368999975 68899999998742 111 10 112347999999999999999999885
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=58.27 Aligned_cols=63 Identities=24% Similarity=0.398 Sum_probs=45.2
Q ss_pred cEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc--eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE--VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++|.|...+. .|.+.+.|+++++++..... ....+. ...+.|.+.....+|.+.|+|.|.|+
T Consensus 1 ~~~L~C~s~~s-kP~a~i~W~k~~~~l~~~~~------~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~ 65 (80)
T cd05885 1 EVELTCLSPRS-KPAATLRWYRDRKELKGVIS------QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHP 65 (80)
T ss_pred CEEEEEeCCCc-cCCCeEEEEECCEECCCCcc------cccCCceEEEEEEEEEEeeeccCCcEEEEEEECh
Confidence 36899998765 46667999999998842110 111221 23456999888889999999999997
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-08 Score=60.42 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=44.0
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe--EEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE--VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
....+|+.+.|.|.. +.|.|. +.|+++.. ..........+... .. ..|.|.+++.+|+|.|+|.+.+.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~--v~Wykq~~g~~~~~~~~~~~r~~~-~~-----~~L~I~~~~~~DsG~Y~C~a~~~ 75 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQAS--VKWLFQRGGDQRKEEVKTEERLIH-TE-----RGLLLRSLQRSDAGVYTCTAVEH 75 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCce--EEEEEECCCCCccccccccccEEE-ec-----CeEEEeeCChhHCEEEEEEEEcc
Confidence 346789999999996 354454 99998532 21111011111211 11 23999999999999999999853
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.2e-08 Score=58.09 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=55.1
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC----CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS----RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
.+..+.+|+++.|.|.+....... +.|++.+..+..... ...++...... ....+|.|++++.+|+|.|+|.+
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~--v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~-~~~~tL~I~~vq~~D~G~Y~Cqv 81 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSV--IQLLNPNRQTIYFRDVRPLKDSRFQLVNFS-SNELRVSLSNVSLSDEGRYFCQL 81 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccE--EEEEecCCcEEEecCccccCCcCEEEEeCC-CCEEEEEECcCCcccCEEEEEEE
Confidence 356789999999999998664444 889877755432111 11222222211 23446999999999999999999
Q ss_pred ccCCeeEEEEE
Q psy13371 170 SNADVASVYVH 180 (212)
Q Consensus 170 ~n~~~~~~~~~ 180 (212)
......+....
T Consensus 82 ~t~p~~~~~~~ 92 (95)
T cd05881 82 YTDPPQEAYTT 92 (95)
T ss_pred EcccCeEEEEE
Confidence 87644444333
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-09 Score=61.68 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=40.2
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
|.|.|.+.+ .+.+.+.|+|++. ... .......|.|.+++.+|+|.|+|.+.+.
T Consensus 17 vtL~C~~~~~~~~~~~~w~k~g~--~~~-----------------~~~~~~~l~I~~~~~~dsG~Y~C~~~~~ 70 (83)
T cd05753 17 LVLRCHGWKNKPVYKVTYYRDGK--AKK-----------------YSHSNSNLSIPQATLSDSGSYHCSGIIG 70 (83)
T ss_pred EEEEeeCCCCCcceEEEEEECCe--Ecc-----------------ccCCCceEEECccCHHHCEEEEEEEEeC
Confidence 579999864 5678899999773 111 0112347999999999999999999985
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.9e-09 Score=63.61 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=45.9
Q ss_pred CeeEee-eCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCE-EEEEEecCC
Q psy13371 1 MLHQRK-LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~ 72 (212)
++|.|. ..|.|.|.|.|+++.... +. .+.|+.+. .++.|.|.+++.+|+| .|.|.+.+.
T Consensus 21 ~~L~C~pP~g~P~P~i~W~~~~~~~-i~-------~~~Ri~~~-----~~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 21 VVLPCNPPKSAVPLRIYWMNSDLLH-IT-------QDERVSMG-----QNGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred EEEEecCCCCCCCCEEEEECCCCcc-cc-------ccccEEEC-----CCceEEEEEEehhhCCCCeEEEEEcc
Confidence 479997 799999999999765321 11 24566554 4579999999999999 799999985
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=62.15 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=51.8
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcc-e---eeeecce----eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDI-H---ILTVGSY----TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~-~---~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+. +...+.|+|.... . +...... .....+|+.+..+......+|+|.+++.+|+|.|.|.+.+
T Consensus 9 v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~ 88 (105)
T cd00099 9 VTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSL 88 (105)
T ss_pred EEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEec
Confidence 4699999987 7889999996531 1 1111100 1122468887765444788999999999999999999987
Q ss_pred CC
Q psy13371 72 QP 73 (212)
Q Consensus 72 ~~ 73 (212)
.+
T Consensus 89 ~~ 90 (105)
T cd00099 89 SG 90 (105)
T ss_pred CC
Confidence 54
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=58.99 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=38.3
Q ss_pred CeeEeeeCCCCCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|.|.| .|.|+|++. .+.. ++ ......|.|.++ .|+|.|.|.+.|.
T Consensus 16 v~l~C~a~G~P~P~~I~W~k~g~--~l~~---------~~------~~~~s~L~i~~~--~d~g~Y~C~A~N~ 69 (81)
T cd05749 16 FNLTCQAVGPPEPVEILWWQGGS--PLGD---------PP------APSPSVLNVPGL--NETSKFSCEAHNA 69 (81)
T ss_pred EEEEEEeeeecCCeEEEEEECCE--ECCC---------CC------CCCCCEEEEccc--cCCeEEEEEEEec
Confidence 3689999999999 799999873 2211 00 011236788776 5889999999996
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-08 Score=61.56 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=46.6
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcc-----eeeee-cceee-----ecCCceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDI-----HILTV-GSYTY-----TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~-----~~~~~-~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.++... ...|.|++.... .+... ..... ...+|+.+..+...++++|+|.+++.+|+|.|
T Consensus 16 vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y 95 (116)
T cd05715 16 VRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQFTDNGTY 95 (116)
T ss_pred eEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCcccCEEE
Confidence 46999987643 257999875421 11111 11110 11245555544556779999999999999999
Q ss_pred EEEecCC
Q psy13371 66 ECQLSTQ 72 (212)
Q Consensus 66 ~C~~~~~ 72 (212)
.|.+.+.
T Consensus 96 ~C~v~~~ 102 (116)
T cd05715 96 TCDVKNP 102 (116)
T ss_pred EEEEEeC
Confidence 9999975
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-08 Score=59.94 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=39.9
Q ss_pred eeEeeeCCC-----CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQRKLKGL-----LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.|.|...+. |.|.+.|+|++. .+... +.... .+..|.|.++..+|+|.|+|.+.+.
T Consensus 14 ~l~Cp~~~~~~~~~~~p~i~Wyk~~~--~i~~~--------~~~~~-----~~~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 14 KIVCPDLDDFKNENTLPPVQWYKDCK--LLEGD--------RKRFV-----KGSKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred EEECCChHHccCCCCCCcEEEeECCE--ECCCC--------ccEEe-----cCCEEEEeeCChhhCEEEEEEEEec
Confidence 588987542 578999999883 22211 11111 3348999999999999999999975
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-08 Score=60.06 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=46.8
Q ss_pred eeeCCCcEEEEeEE-eeC--CCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 97 HVDEGSTINLTCSI-KYS--PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 97 ~~~~g~~~~l~C~~-~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+..|....|.|+- .+. +.+.+.+.|++++.++.... .+.....+. +.|.|.++..+|+|.|+|.+.+.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~---~~~~~~~~~----~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN---EKFYSLKGS----TYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC---cceEecCCC----CEEEEEEcChhhCEEEEEEEEEe
Confidence 45678899999973 222 33444599999998774221 111111111 24999999999999999999986
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.1e-08 Score=61.25 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=45.5
Q ss_pred CeeEeeeCCCC----CceEEEEeeC---cc--eeeeecc-eeeecC----CceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHR---DI--HILTVGS-YTYTSD----QRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~---~~--~~~~~~~-~~~~~~----~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.++..+ ...|.|++.. .. .+..... .....+ +|+.+..+...++.+|+|.+++.+|+|.|+
T Consensus 16 v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~ 95 (115)
T cd05880 16 VRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQPTDNGTYT 95 (115)
T ss_pred EEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCChhhCEEEE
Confidence 36899987543 3579998632 11 1111111 111112 355444445567889999999999999999
Q ss_pred EEecCC
Q psy13371 67 CQLSTQ 72 (212)
Q Consensus 67 C~~~~~ 72 (212)
|.+.+.
T Consensus 96 C~v~~~ 101 (115)
T cd05880 96 CQVKNP 101 (115)
T ss_pred EEEEeC
Confidence 999975
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-08 Score=58.43 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=46.6
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.+.+ ...+.|.+++......... ...+.... ........|.|.+++.+|+|.|+|.+.+. +....
T Consensus 4 ~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~----~~~~~~~~-~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 4 LVLNCTARTELNVGIDFQWDYPGKKEQRAKSV----SENRRSLQ-EHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred EEEEEEEEeCCCCcEEEEEEcCCcccccceec----cccccccc-ccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 36899998765 5688998876422110000 00011010 01123457999999999999999999985 33344
Q ss_pred EEEEEEe
Q psy13371 78 FVNLNVV 84 (212)
Q Consensus 78 ~~~l~v~ 84 (212)
...|.|.
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 4455543
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.7e-08 Score=59.19 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=50.6
Q ss_pred CeeEeeeCCCCC-ceEEEEeeCcce---eeee---cceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLP-TRVSWIRHRDIH---ILTV---GSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~-~~v~W~~~~~~~---~~~~---~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|....... ..|.|+|..+.. +... ..... ...+|+... ....++.+|+|.+++.+|+|.|.|.+..
T Consensus 4 vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~~~~ 82 (97)
T cd05846 4 VTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKCIFNT 82 (97)
T ss_pred EEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEEEEEe
Confidence 479999776543 479999864321 1111 11111 112344443 2455678999999999999999999987
Q ss_pred CC--ceeEEEEEEE
Q psy13371 72 QP--VRSFFVNLNV 83 (212)
Q Consensus 72 ~~--~~~~~~~l~v 83 (212)
.+ ..+..+.|+|
T Consensus 83 ~p~g~~~~~~~L~v 96 (97)
T cd05846 83 FPDGSKSGTMCLTV 96 (97)
T ss_pred CCCCCeeeEEEEEE
Confidence 53 4444555554
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.5e-08 Score=56.81 Aligned_cols=65 Identities=26% Similarity=0.502 Sum_probs=42.9
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc--eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE--VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+.+. .|.+.+.|+++++++.... . ......++. ...+.|.+.....+|.|.|+|.|.|.
T Consensus 2 ~~L~C~v~g~-~P~~~v~W~~~g~~l~~~~--~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~ 68 (82)
T cd05759 2 YNLTCRARGA-KPAAEIIWFRDGEVLDGAT--Y-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNE 68 (82)
T ss_pred EEEEEEEeCc-cCCCEEEEEECCEEccCce--e-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCc
Confidence 6899999875 2334599999998774211 1 111112222 23456888777778889999999986
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-07 Score=54.10 Aligned_cols=70 Identities=30% Similarity=0.703 Sum_probs=49.9
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEc-CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHH-DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+..|+.+.|.|.+.+. +...+.|+++ +..+. ............ ...|.|.++..+|+|.|.|.+.+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~~v~----~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGS--PPPEVTWYKQGGKLLA----ESGRFSVSRSGS--NSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred cEEEeCCCeEEEEEEEccC--CCCeEEEEECCCEEcC----CCCcEEEEEcCC--eeEEEEEeeccccCeEEEEEEEcC
Confidence 4567889999999999876 3345999998 65553 111222222221 346999999999999999999976
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-07 Score=54.10 Aligned_cols=70 Identities=30% Similarity=0.703 Sum_probs=49.9
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEc-CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHH-DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+..|+.+.|.|.+.+. +...+.|+++ +..+. ............ ...|.|.++..+|+|.|.|.+.+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~~v~----~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGS--PPPEVTWYKQGGKLLA----ESGRFSVSRSGS--NSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred cEEEeCCCeEEEEEEEccC--CCCeEEEEECCCEEcC----CCCcEEEEEcCC--eeEEEEEeeccccCeEEEEEEEcC
Confidence 4567889999999999876 3345999998 65553 111222222221 346999999999999999999976
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.1e-08 Score=56.69 Aligned_cols=63 Identities=17% Similarity=0.332 Sum_probs=40.3
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecce--eeecCC-ceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSY--TYTSDQ-RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~--~~~~~~-r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.| .|.+.|.|+|++. .+..... ....++ .+.. ...|.|.....+|.|.|+|.+.+.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~--~l~~~~~~~~~~~~~~~~~~-------~s~L~i~~~~~~~~~~y~C~a~n~ 68 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGE--VLDGATYSKELLKDGKRETT-------VSTLPITPSDHDTGRTFTCRARNE 68 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCE--EccCceeeeeEecCCCeEEE-------EEEEEEeCceecCCCEEEEEEcCc
Confidence 369999998 5889999999773 2221111 000111 1111 125778777778889999999985
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.3e-08 Score=59.18 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=51.3
Q ss_pred CeeEeeeCCC-CCceEEEEeeCccee---eee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHI---LTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~---~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|..... +...+.|+|...... +.. ........+|+.+..+...+..+|+|.+++.+|+|.|.|.+...+
T Consensus 10 vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 10 VTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred EEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 4689998763 567899999764221 110 111112247888875556678899999999999999999998754
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.8e-08 Score=61.23 Aligned_cols=80 Identities=31% Similarity=0.461 Sum_probs=52.0
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe---E---EEeeC----CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE---V---ISYDS----SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~---~---~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..|....+.+|++++|.|.+...+.+ .+.|++... + +.... ....+.............|.|.+++.+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~--~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFY--YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS 80 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCcc--EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence 34556789999999999999765334 489998642 1 11111 112233222222223456999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+.+.
T Consensus 81 DsG~Y~C~~~~~ 92 (109)
T cd04983 81 DSAVYFCALSES 92 (109)
T ss_pred HCEEEEEEEecC
Confidence 999999998865
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.3e-08 Score=61.43 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=50.0
Q ss_pred CeeEeeeCC--CCCceEEEEeeCcce----eeeec---cee---eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKG--LLPTRVSWIRHRDIH----ILTVG---SYT---YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~--~p~~~v~W~~~~~~~----~~~~~---~~~---~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+ .+.+.+.|+|..... +.... ... ....+|+.+..+.......|+|.+++.+|+|.|.|.
T Consensus 16 v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 95 (116)
T cd04982 16 VTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATYYCA 95 (116)
T ss_pred EEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEEEEEE
Confidence 468999988 678899999975321 11111 101 112478888765444678999999999999999999
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
+..
T Consensus 96 ~~~ 98 (116)
T cd04982 96 YWE 98 (116)
T ss_pred Eec
Confidence 865
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-08 Score=55.44 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=42.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.|.+.+.|++++. ... . +... ......|.|.+++.+|+|.|.|.+.+.
T Consensus 5 ~~l~C~~~~~~~~~v~W~~~~~--~~~-~--------~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 5 VTLTCPAEGDPVPNITWLKDGK--PLP-E--------SNRL----SASGSTLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred EEEEeeCccCCCCeEEEEECCE--ECC-C--------CCEE----ecCCcEEEEeeCCcccCEEEEEEEecC
Confidence 3689999999999999999763 221 0 1111 123458999999999999999999764
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-08 Score=70.06 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=43.2
Q ss_pred CeeEeeeCC-----CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-----LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+ .|.|.+.|+|++. .+.. ++|+.+.. ++..|.|.+++.+|+|.|+|.+...
T Consensus 147 v~L~C~~~~~~~~~~p~p~I~WyKng~-~l~~--------~~r~~~~~----~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 147 SKLHCYGTDGISSTFKDYTLTWYKNGN-IVLY--------TDRIQLRN----NNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred EEEEeeCCCCccccCCCceEEEEECCE-ECCC--------CCCEEEeC----CCCEEEECcCCHHhCEEEEEEEEEe
Confidence 368999863 4679999999873 2221 23555431 3348999999999999999999863
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-07 Score=55.09 Aligned_cols=62 Identities=24% Similarity=0.459 Sum_probs=46.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+.+.+.|+++++..+. .+.++.... ......|.|.+++.+|+|.|.|.+.+.
T Consensus 12 ~~l~C~~~~~~~~~~~W~~~~~~~v~--------~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00410 12 VTLSCEVSGSPPPEVTWYKQGGKLLA--------ESGRFSVSR--SGSNSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred EEEEEEEccCCCCeEEEEECCCEEcC--------CCCcEEEEE--cCCeeEEEEEeeccccCeEEEEEEEcC
Confidence 36899999998999999997322222 234555542 222568999999999999999999965
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-07 Score=55.09 Aligned_cols=62 Identities=24% Similarity=0.459 Sum_probs=46.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+.+.+.|+++++..+. .+.++.... ......|.|.+++.+|+|.|.|.+.+.
T Consensus 12 ~~l~C~~~~~~~~~~~W~~~~~~~v~--------~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00409 12 VTLSCEVSGSPPPEVTWYKQGGKLLA--------ESGRFSVSR--SGSNSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred EEEEEEEccCCCCeEEEEECCCEEcC--------CCCcEEEEE--cCCeeEEEEEeeccccCeEEEEEEEcC
Confidence 36899999998999999997322222 234555542 222568999999999999999999965
|
|
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-07 Score=57.81 Aligned_cols=74 Identities=20% Similarity=0.351 Sum_probs=48.0
Q ss_pred eeeeCCCcEEEEeEEee-----C----CCCCceEEEEEcCeEEEeeCCCCce-eEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 96 LHVDEGSTINLTCSIKY-----S----PEPPAYIFWYHHDEVISYDSSRGGV-SVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~-----~----~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
..+.+|+.+.|.|.... + ......+.|++++.......+.... ......+ ..|.|.++..+|+|.|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~----~~Lwf~Pa~~eDSG~Y 85 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE----DSIWFRPAELQDSGLY 85 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC----CEEEEEeCChhhCeEE
Confidence 46789999999999721 0 1123358999997544322211000 1122222 2499999999999999
Q ss_pred EEEcccCC
Q psy13371 166 SCSPSNAD 173 (212)
Q Consensus 166 ~C~~~n~~ 173 (212)
+|.+.|+.
T Consensus 86 ~C~~rN~t 93 (104)
T cd05896 86 TCVLRNST 93 (104)
T ss_pred EEEECCCC
Confidence 99999984
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-08 Score=60.48 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=43.4
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.+|.|.. .+.|.+.+.|++++...... .++|..+. ..++.|.|.+++.+|+|.|.|.+.+.
T Consensus 21 ~~L~C~pP~g~P~p~~~W~k~~~~~~~~-------~d~r~~~~----~~~G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 21 VVLFCDPPPHYPDLSYRWLLNEFPNFIP-------EDGRRFVS----QTNGNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred EEEeeCCCCCCCCCEEEEEECCcccccc-------cCCCeEEe----CCCCcEEEeecCHhhCceeEEEEEec
Confidence 3689964 55699999999986311111 13333332 24679999999999999999999985
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.74 E-value=8e-08 Score=60.33 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=48.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeec--cee---eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVG--SYT---YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~--~~~---~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+ +.+.+.|+|..... +.... ... ...++|+....+ ......|+|.+++.+|+|.|.|.+..
T Consensus 16 v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 93 (110)
T cd05899 16 VTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP-SLTRSSLTIKSAEPEDSAVYLCASSL 93 (110)
T ss_pred EEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc-CCCccEEEECCCChhhCEEEEEEeeC
Confidence 368999988 77899999976421 11111 000 112467877642 23678899999999999999999876
Q ss_pred C
Q psy13371 72 Q 72 (212)
Q Consensus 72 ~ 72 (212)
.
T Consensus 94 ~ 94 (110)
T cd05899 94 G 94 (110)
T ss_pred C
Confidence 3
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.8e-08 Score=60.14 Aligned_cols=78 Identities=26% Similarity=0.390 Sum_probs=50.9
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe--EE---EeeC---------CCCceeEEeecCceEEEEEEEee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE--VI---SYDS---------SRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~--~~---~~~~---------~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
+.|....+.+|+.++|.|...+ +.+ .+.|++... .+ .... ....+........ ....|.|.+
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~--~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~L~I~~ 78 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHD--NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSL-TRSSLTIKS 78 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCC--EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCC-CccEEEECC
Confidence 4566778999999999999876 334 499998642 11 1111 0111222222211 345699999
Q ss_pred eeecCCEEEEEEcccC
Q psy13371 157 AELKDSGKYSCSPSNA 172 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~ 172 (212)
++.+|+|.|.|.+.+.
T Consensus 79 ~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 79 AEPEDSAVYLCASSLG 94 (110)
T ss_pred CChhhCEEEEEEeeCC
Confidence 9999999999998764
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-07 Score=57.98 Aligned_cols=72 Identities=25% Similarity=0.289 Sum_probs=51.9
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcc----eee-eec-----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDI----HIL-TVG-----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~----~~~-~~~-----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|... ......+.|++.... .+. ... .......+|+.+..+....+.+|+|.+++.+|+|.|.|.+
T Consensus 19 v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v 98 (114)
T PF07686_consen 19 VTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQV 98 (114)
T ss_dssp EEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEEEEEE
T ss_pred EEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEEEEEE
Confidence 46899999 567789999996541 111 001 1111224688887666778999999999999999999999
Q ss_pred cCC
Q psy13371 70 STQ 72 (212)
Q Consensus 70 ~~~ 72 (212)
...
T Consensus 99 ~~~ 101 (114)
T PF07686_consen 99 STS 101 (114)
T ss_dssp EES
T ss_pred EEC
Confidence 875
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-07 Score=55.25 Aligned_cols=65 Identities=22% Similarity=0.403 Sum_probs=49.5
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+..|+++.|.|...+. .+.+.|.+++..+..+ .+......| |.|.+++.+|+|.|.|.+...
T Consensus 5 ~~tv~~g~~v~L~C~~~s~---~A~v~W~~ng~~l~~~----~r~~~~~~G------LlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN---LASPVWLFNGTPLNAQ----FSYRVGTDG------LLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred EEEEecCCCEEEECCCCCC---CccEEEEECCcccCCC----cceEEeCCC------CEEEECCHhhCEEEEEEEecC
Confidence 4578899999999998754 3349999999987321 233444444 788899999999999998744
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-07 Score=57.52 Aligned_cols=69 Identities=22% Similarity=0.215 Sum_probs=47.7
Q ss_pred CeeEeeeCCC--CCceEEEEeeCccee----eeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHI----LTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~----~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+++. ....+.|+|...... ..... ......+|+.... .....+|+|.+++.+|+|.|.|.+.+
T Consensus 9 v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 9 VTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK--SGNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred EEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCChhhCEEEEEEEcc
Confidence 4689999876 567899999775221 11111 0001145888763 44778899999999999999999865
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.2e-08 Score=59.44 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=49.1
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..|+.+.|.|.+.+..++.+.+.|++++..+...... .......++. ...+.|.+......+.+.|+|.+.|..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~-~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTT-TPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceec-cccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence 4688999999999885445679999999877432210 1112222332 234556666555669999999999873
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-07 Score=57.15 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=43.1
Q ss_pred eeEeeeCCCCCceEEEEeeCcc----eeeee-cc-eee----ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDI----HILTV-GS-YTY----TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~----~~~~~-~~-~~~----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
.|.|.....+...+.|+|.... .+... .. ... ...+|..+. .+++|.|++++.+|+|.|+|.+.+
T Consensus 17 ~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~-----~ngSL~I~~v~~~D~G~Y~~~v~~ 91 (105)
T cd05774 17 LLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY-----PNGSLLIQNVTQKDTGFYTLQTIT 91 (105)
T ss_pred EEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe-----CCCcEEEecCCcccCEEEEEEEEe
Confidence 5777654444559999996421 11111 10 000 123566665 466999999999999999999988
Q ss_pred CC
Q psy13371 72 QP 73 (212)
Q Consensus 72 ~~ 73 (212)
..
T Consensus 92 ~~ 93 (105)
T cd05774 92 TN 93 (105)
T ss_pred CC
Confidence 64
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=60.19 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=50.7
Q ss_pred CeeEeeeCCC-CCceEEEEeeCccee----eeec-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHI----LTVG-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~----~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+++. ....+.|+|...... .... ......++|+.+..+...++.+|+|.+++.+|+|.|.|.+...
T Consensus 17 v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 17 VTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred EEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence 4699998865 567899999754221 1111 1111224789887655667899999999999999999998753
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.2e-07 Score=52.80 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=45.8
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++|.|.+.+. .|.+.+.|++++.++..... .......+....++|.+.....+|...|+|.|.|+
T Consensus 2 ~~L~C~s~gS-kP~A~I~W~k~~~~l~~~~~---~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~ 66 (82)
T cd05883 2 IELNCTAMAS-KPAATIRWFKGNKELTGKST---VEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHP 66 (82)
T ss_pred EEEEEEecCC-CCCCEEEEEECCEECcCccc---ceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCc
Confidence 6899999866 68788999999988842210 01112234446677888666667777999999987
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.8e-08 Score=58.40 Aligned_cols=59 Identities=20% Similarity=0.365 Sum_probs=39.2
Q ss_pred eeEee-eC----CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQRK-LK----GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~-~~----~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.|.|. .. ..+.|.+.|+|++ ..+... +.++.... +...|.|.++..+|+|.|+|.+.+.
T Consensus 14 ~l~Cp~~~~f~~~~~~~~v~WYKd~--~~l~~~------~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 14 KLVCPDLSDFTINRTDVELQWYKDS--VLLDKD------NEKFYSLK----GSTYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred EEECCCHHHcccCCCCCcEEEccCC--EECcCC------CcceEecC----CCCEEEEEEcChhhCEEEEEEEEEe
Confidence 57786 22 3367899999988 333211 11222211 2336999999999999999999874
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=58.43 Aligned_cols=69 Identities=23% Similarity=0.349 Sum_probs=47.0
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcce----eeeecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIH----ILTVGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~----~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+.. ...+.|+|..... +...... .....+|+... .......|+|.+++.+|+|.|.|.+.+
T Consensus 18 v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 18 ATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS--GSGTDFTLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred EEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe--ccCCEEEEEECCCChHHCEEEEEEEeC
Confidence 46999998765 6789999876321 1111111 11113577765 345678899999999999999999865
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=98.63 E-value=4e-07 Score=56.82 Aligned_cols=71 Identities=28% Similarity=0.491 Sum_probs=48.2
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcce----e---eee---cceeee---cCCceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIH----I---LTV---GSYTYT---SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~----~---~~~---~~~~~~---~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.+.+. ....+.|+|..+.. + ... +..... .++|+.+..........|+|.+++.+|+|.|.
T Consensus 9 vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~Yy 88 (107)
T cd07700 9 VKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDSGTYF 88 (107)
T ss_pred EEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHCEEEE
Confidence 4699999764 45689999987531 0 111 111111 14678775445566788999999999999999
Q ss_pred EEecC
Q psy13371 67 CQLST 71 (212)
Q Consensus 67 C~~~~ 71 (212)
|....
T Consensus 89 Ca~~~ 93 (107)
T cd07700 89 CMTVG 93 (107)
T ss_pred EeEcC
Confidence 99764
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.9e-07 Score=72.02 Aligned_cols=156 Identities=15% Similarity=0.203 Sum_probs=99.2
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--CceeE
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~ 77 (212)
+-|.|.+.+. |.+.+.|++...... +|+... .+..|......++..+.|.|++.+. .....
T Consensus 25 v~l~C~v~~~pp~~~~eW~h~~~~~~-----------~~~~~~-----~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~ 88 (741)
T KOG3515|consen 25 VPLPCRVNSNPPEIDVEWYHSTSGEH-----------GRYATI-----ADPTLVTTGDVRDTVAELNCRAFNSVGMPSRC 88 (741)
T ss_pred ceeeeecCCCCCCcceEEEecCcccc-----------cccccc-----cCCceeeecchhhhhhhhhhhhcccccCceec
Confidence 4689999987 568999999774221 122222 2336667777788888999999985 23334
Q ss_pred EEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeE-EeecCc-eEEEEEEEe
Q psy13371 78 FVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV-ITEKGE-VTTSYLLIQ 155 (212)
Q Consensus 78 ~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~i~ 155 (212)
...+.+.+++.-...........+..+.+.|.+.....|..++.|..+..............- ....+. ...+.+.+.
T Consensus 89 ~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~ 168 (741)
T KOG3515|consen 89 PMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQT 168 (741)
T ss_pred ceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeE
Confidence 445566665543322233345678889999977666567667999988765543322111111 011111 123458888
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
..+.++.|.|+|.+.|.
T Consensus 169 v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 169 VSRKADNGNYTCPANNR 185 (741)
T ss_pred EEEecCCceeEcccccc
Confidence 88899999999999984
|
|
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.6e-07 Score=56.17 Aligned_cols=81 Identities=19% Similarity=0.364 Sum_probs=49.6
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCC--CCceEEEEEcCe------EEE-eeCCC-----C----ceeEEeecCceEEEEEE
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPE--PPAYIFWYHHDE------VIS-YDSSR-----G----GVSVITEKGEVTTSYLL 153 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~--p~~~v~W~~~~~------~~~-~~~~~-----~----~~~~~~~~~~~~~~~l~ 153 (212)
.|....+..|+.++|.|....... ....+.|++... .+. +.... . .+.....+.......|.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 456678899999999999864321 224589986431 111 11100 0 11111111111235699
Q ss_pred EeeeeecCCEEEEEEcccC
Q psy13371 154 IQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~ 172 (212)
|.+++.+|+|.|.|.+.|.
T Consensus 84 I~~v~~~D~G~Y~C~v~~~ 102 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNP 102 (116)
T ss_pred EeeCCcccCEEEEEEEEeC
Confidence 9999999999999999975
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.2e-07 Score=57.62 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=50.6
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE----EEeeCC---------CCceeEEeecCceEEEEEEEe
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV----ISYDSS---------RGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~----~~~~~~---------~~~~~~~~~~~~~~~~~l~i~ 155 (212)
+.|....+.+|+.++|.|.+.+...+...+.|++.. .. +..... ...+.............|.|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 345667788999999999987621233349999863 21 111110 112222222222134569999
Q ss_pred eeeecCCEEEEEEccc
Q psy13371 156 QAELKDSGKYSCSPSN 171 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n 171 (212)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-07 Score=54.27 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=43.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~ 78 (212)
+.|.|.+.+.|.+.+.|++++ ..+.... + .+.+.++..+|.|.|+|.+.+.. ..+..
T Consensus 17 ~~l~C~~~~~p~~~~~w~~~~--~~~~~~~-----------------~--~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~ 75 (80)
T PF13895_consen 17 VTLTCSVSGNPPPQVQWYKNG--SPINSSQ-----------------N--GLFIPNVSPEDSGNYTCRASNGSGSNTSTS 75 (80)
T ss_dssp EEEEEEEESSSSSEEEEEETT--EEEEEES-----------------S--EEEESSEEGGGTEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEcccceeeeeeeee--eeeeeee-----------------e--eeeeeeeccccCEEEEEEEEeCCCCeEeee
Confidence 468999999888999999966 2222110 1 16678899999999999998853 33444
Q ss_pred EEEE
Q psy13371 79 VNLN 82 (212)
Q Consensus 79 ~~l~ 82 (212)
+.|+
T Consensus 76 ~~v~ 79 (80)
T PF13895_consen 76 VNVT 79 (80)
T ss_dssp EEEE
T ss_pred EEee
Confidence 4444
|
... |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-07 Score=58.48 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=48.8
Q ss_pred CeeEeeeCCCC------CceEEEEeeCcce----eeeecc-e---eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGLL------PTRVSWIRHRDIH----ILTVGS-Y---TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~p------~~~v~W~~~~~~~----~~~~~~-~---~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.++..+ ...+.|+|..... +..... . .....+|+++..+...++.+|+|.+++.+|+|.|.
T Consensus 17 VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~ 96 (119)
T cd05712 17 VLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDSGKYF 96 (119)
T ss_pred EEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhCeEEE
Confidence 47999876432 3569999976432 111111 0 01123688886556778899999999999999999
Q ss_pred EEecCC
Q psy13371 67 CQLSTQ 72 (212)
Q Consensus 67 C~~~~~ 72 (212)
|.+...
T Consensus 97 C~~~~~ 102 (119)
T cd05712 97 FRVELG 102 (119)
T ss_pred EEEEcC
Confidence 988653
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=55.31 Aligned_cols=80 Identities=23% Similarity=0.375 Sum_probs=49.0
Q ss_pred CCceeeeCCCcEEEEeEEeeCCC--CCceEEEEEc----Ce--EEEee-CCC--------CceeEEeecCceEEEEEEEe
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPE--PPAYIFWYHH----DE--VISYD-SSR--------GGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~--p~~~v~W~~~----~~--~~~~~-~~~--------~~~~~~~~~~~~~~~~l~i~ 155 (212)
+..+.+.+|+.++|.|.....+. ....+.|++. +. .+... ... ..+.....+.......|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 46678999999999999865432 1235899753 11 12111 100 01111111111123569999
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
+++.+|+|.|.|.+.|.
T Consensus 85 ~v~~~D~G~Y~C~v~~~ 101 (115)
T cd05880 85 QLQPTDNGTYTCQVKNP 101 (115)
T ss_pred eCChhhCEEEEEEEEeC
Confidence 99999999999999986
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.2e-07 Score=55.33 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=33.8
Q ss_pred ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 13 TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 13 ~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
..+.|+|++.....+.. ......|.... +..|.|..+..+|+|.|+|.+.+..
T Consensus 41 ~~v~WyK~~~~~~~~~~--~~~~~~Ri~~~------~~~Lwf~Pa~~eDSG~Y~C~~rN~t 93 (104)
T cd05896 41 LSLMWYKSSGDGEEPIE--IIFDGVRMSKE------EDSIWFRPAELQDSGLYTCVLRNST 93 (104)
T ss_pred ceEEEEECCCCCCCCCc--ccccceeEEEe------CCEEEEEeCChhhCeEEEEEECCCC
Confidence 48999998631211111 00011244433 3479999999999999999999864
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-06 Score=53.09 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=48.9
Q ss_pred eeEeeeCCCCCc-eEEEEeeCcceeeeecceeeecCCceEEEeeC--CCCeEEEEEcccCCCC-CEEEEEEecCC-Ccee
Q psy13371 2 LHQRKLKGLLPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR--EGDEWTLHIKWAQKRD-AGVYECQLSTQ-PVRS 76 (212)
Q Consensus 2 ~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~i~~~~~~d-~G~Y~C~~~~~-~~~~ 76 (212)
.|.|.+.+.|.| .|.|...+. .+..+ .++||.+.... ......|+|.++..+| .|.|.|.+.|. +...
T Consensus 20 ~L~C~~~s~P~P~~i~W~w~~~--~i~~~-----~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~ 92 (98)
T cd05898 20 KVKCFIGSTPPPDRIAWAWKEN--VLESG-----TSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGT 92 (98)
T ss_pred EEEEEEccCCCCcEEEEEEccc--cccCC-----CCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccce
Confidence 699999777765 678887663 22111 14578776422 2345679999998877 79999999996 4444
Q ss_pred EEEE
Q psy13371 77 FFVN 80 (212)
Q Consensus 77 ~~~~ 80 (212)
..+.
T Consensus 93 ~~i~ 96 (98)
T cd05898 93 AIIQ 96 (98)
T ss_pred EEEE
Confidence 4443
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.3e-07 Score=55.39 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=46.3
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++..+..|+.++|.|... .+...+.|+++|........ ........+.|.++..+|+|.|+|.+.+.
T Consensus 9 p~~vV~~G~~VtL~C~~~---~~~~~f~l~k~g~~~~~~~~---------~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 9 PSSVVPLGKPVTLRCQGP---YGAVEYRLYREGSTFAVKKP---------PEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCCccCCCCcEEEEEecC---CCCCEEEEEECCCCcccccc---------CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 345688999999999874 23334888888865421110 01111234999999999999999999764
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-07 Score=54.72 Aligned_cols=60 Identities=30% Similarity=0.540 Sum_probs=39.0
Q ss_pred CcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 102 ~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
+.+.|.|.+.+.+. ...+.|+ ...... ...........+.|.+.++..+|.|.|+|.|.|
T Consensus 16 ~~~~l~C~~~~~~~-~~~~~W~-~~~~~~--------~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 16 GSVTLTCSAEGGPP-PPSISWY-DSNPSF--------NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEESSEES-SEEEEEE-TEEEEE--------EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeEEEEEEEccccC-CeEEEEE-ecCCce--------eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 33999999987752 5569999 111110 011111122335699999999999999999976
|
... |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.3e-07 Score=55.58 Aligned_cols=69 Identities=23% Similarity=0.378 Sum_probs=47.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcc--ee----eeecc--e-ee----ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDI--HI----LTVGS--Y-TY----TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~--~~----~~~~~--~-~~----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 67 (212)
+.|.|.+.+.....+.|+|.... .. ..... . .. ...+|+.... ......|+|.+++.+|+|.|.|
T Consensus 9 vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~sDsgtY~C 86 (104)
T cd05720 9 VELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR--SSNSFVLTLKNFQKENEGYYFC 86 (104)
T ss_pred EEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe--cCCEEEEEECCCCHHHCEEEEE
Confidence 46899997776678999997743 11 11111 1 11 1135777653 3477889999999999999999
Q ss_pred EecC
Q psy13371 68 QLST 71 (212)
Q Consensus 68 ~~~~ 71 (212)
....
T Consensus 87 a~~~ 90 (104)
T cd05720 87 SVAS 90 (104)
T ss_pred EEcc
Confidence 8764
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.3e-07 Score=55.30 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=50.2
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEeeCCC-----CceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYDSSR-----GGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|....+.+|+.++|.|.+.+.. ....+.|++... .+...... ..+..... ......|.|++++.
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~-~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~ 80 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSV-SSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--SGTDFTLTISRVEP 80 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCC-CCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec--cCCEEEEEECCCCh
Confidence 3456667889999999999986543 123489998631 11111100 11122111 11335699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+.+.
T Consensus 81 ~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 81 EDAAVYYCQQYGT 93 (106)
T ss_pred HHCEEEEEEEeCC
Confidence 9999999998653
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.4e-07 Score=54.26 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=44.2
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..++.++|.|.+.+..++.+.+.|.++|..+....... ......++.. ..+.|.+..-...+...|+|.+.+.
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s-~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAAST-APQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeec-ccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence 34567899999998766678899999998753211111 1122222221 2344555433333556999999886
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.52 E-value=8e-07 Score=55.22 Aligned_cols=77 Identities=29% Similarity=0.442 Sum_probs=49.0
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEee-C-------CCCceeEEeecCceEEEEEEEeeeeecCCE
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYD-S-------SRGGVSVITEKGEVTTSYLLIQQAELKDSG 163 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~-~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 163 (212)
.+.+|+.++|.|..... .+...+.|++... .+... . ....+.............|.|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~-~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGS-FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCC-cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 46789999999999864 2333589998542 11111 0 111222222222113356999999999999
Q ss_pred EEEEEcccCCe
Q psy13371 164 KYSCSPSNADV 174 (212)
Q Consensus 164 ~y~C~~~n~~~ 174 (212)
.|.|.+.+...
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987643
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.1e-07 Score=53.04 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=45.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|+|...+. ...+.|++++.. +. .+.|+... ...|.|.+++.+|+|.|.|.....+.....+.
T Consensus 14 v~L~C~~~s~-~A~v~W~~ng~~-l~--------~~~r~~~~------~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~ 77 (85)
T cd05872 14 VVLPCQLRSN-LASPVWLFNGTP-LN--------AQFSYRVG------TDGLLILVTSPEHSGTYRCYSEEEGFQQLVAS 77 (85)
T ss_pred EEEECCCCCC-CccEEEEECCcc-cC--------CCcceEEe------CCCCEEEECCHhhCEEEEEEEecCCCeEEEEE
Confidence 4799999876 459999998842 21 13354443 12477999999999999999887654444443
Q ss_pred EE
Q psy13371 81 LN 82 (212)
Q Consensus 81 l~ 82 (212)
+.
T Consensus 78 y~ 79 (85)
T cd05872 78 YS 79 (85)
T ss_pred EE
Confidence 33
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.3e-07 Score=55.82 Aligned_cols=80 Identities=14% Similarity=0.251 Sum_probs=48.8
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.+.......++.++|.|.+.+..+..+.+.|.++|..+...... .......++.. ..+.|.+..-...+...|+|.+.
T Consensus 8 ~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~-~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~ 86 (100)
T cd07699 8 PPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQT-STTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVT 86 (100)
T ss_pred CCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEec-cccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEE
Confidence 33433455677899999999876567789999999877322111 11122223322 23445554333344569999998
Q ss_pred cC
Q psy13371 171 NA 172 (212)
Q Consensus 171 n~ 172 (212)
++
T Consensus 87 H~ 88 (100)
T cd07699 87 HE 88 (100)
T ss_pred ec
Confidence 86
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.5e-06 Score=53.59 Aligned_cols=79 Identities=28% Similarity=0.551 Sum_probs=50.7
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEE-ee---------CCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VIS-YD---------SSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~-~~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.+.|.|... .......+.|++... .+. .. .....+.....+.......|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp ESEEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred CCeEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 4556789999999999998 233444689998432 111 00 0111122222222223456999999
Q ss_pred eecCCEEEEEEcccC
Q psy13371 158 ELKDSGKYSCSPSNA 172 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~ 172 (212)
+.+|+|.|.|.+...
T Consensus 87 ~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTS 101 (114)
T ss_dssp SGGGEEEEEEEEEES
T ss_pred CcCcCEEEEEEEEEC
Confidence 999999999999875
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=52.67 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=48.5
Q ss_pred CeeEeeeCCCCCce-EEEEeeCcceeeeecceeeecCCceEEEeeCCC--CeEEEEEcccCCCCCEEEEEEecCC-Ccee
Q psy13371 1 MLHQRKLKGLLPTR-VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREG--DEWTLHIKWAQKRDAGVYECQLSTQ-PVRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~ 76 (212)
+.|.|.++.+|.|. +.|.+++.. ..... +..+... +... -...|++..++.+|+|.|+|.+.|. ...+
T Consensus 21 ~~L~V~ieAYP~p~~~~W~~~~~~--l~~~~-----~~~~~~~-~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s 92 (101)
T cd05860 21 LDLIVEYEAYPKPEHQQWIYMNRT--LTNTS-----DHYVKSR-NESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASAS 92 (101)
T ss_pred EEEEEEEEeCCCCeeeEEEcCCcc--cCccc-----cceeEEe-ccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEE
Confidence 35899999999997 999998741 11110 0011111 0011 1246999999999999999999996 3455
Q ss_pred EEEEEEE
Q psy13371 77 FFVNLNV 83 (212)
Q Consensus 77 ~~~~l~v 83 (212)
..+.|.|
T Consensus 93 ~tF~l~v 99 (101)
T cd05860 93 VTFNVYV 99 (101)
T ss_pred EEEEEEE
Confidence 5555554
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-06 Score=49.13 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=43.6
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--cee
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRS 76 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~ 76 (212)
+.|.|.+.|. |...|.|+|++. .+..... .-.....+.... .|.|.--...|...|+|++.+.. ...
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~--~l~~~~~~~~~~~~~~t~~S-------~L~~~p~~eDdG~~~~C~a~~~~l~~~~ 72 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNK--ELTGKSTVEETWSRMFTVTS-------QLMLKVTKEDDGVPVICLVDHPAVKDLQ 72 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCE--ECcCcccceeccCCCcEEEE-------EEEEECchhhCCCEEEEEEcCcccCCce
Confidence 4689999997 899999999873 2221111 001122333332 57774444445557999999852 234
Q ss_pred EEEEEEEe
Q psy13371 77 FFVNLNVV 84 (212)
Q Consensus 77 ~~~~l~v~ 84 (212)
....|.|.
T Consensus 73 ~~~~L~V~ 80 (82)
T cd05883 73 TQRYLEVQ 80 (82)
T ss_pred eeEEEEEE
Confidence 44555554
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=52.45 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=46.9
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCce--EEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAY--IFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
+....+.+|+.++|.|.+.+. .|.+. +.|++++..+....... .........+++.+.....+|...|+|.|.
T Consensus 8 ~~p~~~~eG~~~tL~C~v~g~-~P~a~L~i~W~rG~~~l~~~~~~~----~~~~~~~~~stlt~~~~r~D~g~~~sC~A~ 82 (100)
T cd05755 8 PLPSWQPVGKNYTLQCDVPGV-APRQNLTVVLLRGNETLSRQPFGD----NTKSPVNAPATITITVDREDHGANFSCETE 82 (100)
T ss_pred cCCCcccCCCcEEEEEEEcCc-CCCCcEEEEEeeCCEEcccceecc----ccCCCceeEEEEEEecchhhCCcEEEEEEE
Confidence 334457899999999999865 34444 79999998884321110 011122234557765444444449999998
Q ss_pred cC
Q psy13371 171 NA 172 (212)
Q Consensus 171 n~ 172 (212)
+.
T Consensus 83 l~ 84 (100)
T cd05755 83 LD 84 (100)
T ss_pred ec
Confidence 75
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.9e-06 Score=51.46 Aligned_cols=71 Identities=32% Similarity=0.437 Sum_probs=47.9
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EE-EeeCC---------CCceeEEeecCceEEEEEEEeeeeec
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VI-SYDSS---------RGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~-~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..+.+|+++.|.|.. .|.....+.|++... .+ .+... ..++.....++ +|.|.+++.+
T Consensus 8 ~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng-----SL~I~~v~~~ 80 (105)
T cd05774 8 PQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG-----SLLIQNVTQK 80 (105)
T ss_pred CcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC-----cEEEecCCcc
Confidence 357889999999976 456655799999631 11 11111 12233333333 4999999999
Q ss_pred CCEEEEEEcccCC
Q psy13371 161 DSGKYSCSPSNAD 173 (212)
Q Consensus 161 d~g~y~C~~~n~~ 173 (212)
|+|.|+|.+.+..
T Consensus 81 D~G~Y~~~v~~~~ 93 (105)
T cd05774 81 DTGFYTLQTITTN 93 (105)
T ss_pred cCEEEEEEEEeCC
Confidence 9999999998863
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.3e-06 Score=52.06 Aligned_cols=72 Identities=21% Similarity=0.432 Sum_probs=44.0
Q ss_pred CCCcEEEEeEEeeCC----CCCceEEEEEcCe------EEEeeC--------CCCceeEEeecCceEEEEEEEeeeeecC
Q psy13371 100 EGSTINLTCSIKYSP----EPPAYIFWYHHDE------VISYDS--------SRGGVSVITEKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~----~p~~~v~W~~~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d 161 (212)
.|++++|.|.....| .....+.|++... .+.... ....+...... ......|.|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHH
Confidence 388999999987553 2334599998641 111110 01112222111 1112469999999999
Q ss_pred CEEEEEEcccC
Q psy13371 162 SGKYSCSPSNA 172 (212)
Q Consensus 162 ~g~y~C~~~n~ 172 (212)
+|.|.|.+.+.
T Consensus 80 sG~Y~C~v~~~ 90 (106)
T cd05877 80 YGRYRCEVIDG 90 (106)
T ss_pred CEEEEEEEEec
Confidence 99999999876
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=50.93 Aligned_cols=68 Identities=16% Similarity=0.359 Sum_probs=42.5
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++|.|.+.+..++.+++.|+++++++..... ........++.. ..+.|.+.....++...|+|.+.+.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~-~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVS-TTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEE-ECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 6899999987656678999999986421111 111122233333 2445666554556667999999875
|
|
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.1e-06 Score=52.03 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=44.2
Q ss_pred CCCcEEEEeEEeeCCCC--------CceEEEEEcC--eEEE---ee-------CCCCceeEEee-cCceEEEEEEEeeee
Q psy13371 100 EGSTINLTCSIKYSPEP--------PAYIFWYHHD--EVIS---YD-------SSRGGVSVITE-KGEVTTSYLLIQQAE 158 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p--------~~~v~W~~~~--~~~~---~~-------~~~~~~~~~~~-~~~~~~~~l~i~~~~ 158 (212)
.|++++|.|.....+.+ ...+.|++.. +... .. ....++..... ........|.|++++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 48899999999754322 3568999862 2111 11 01111222211 111122459999999
Q ss_pred ecCCEEEEEEcccC
Q psy13371 159 LKDSGKYSCSPSNA 172 (212)
Q Consensus 159 ~~d~g~y~C~~~n~ 172 (212)
.+|+|.|.|.+...
T Consensus 81 ~sD~G~Y~C~v~~~ 94 (110)
T cd05878 81 SSDSGVYRCEVMHG 94 (110)
T ss_pred hhhCEEEEEEEEeC
Confidence 99999999999865
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=54.41 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=48.1
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee----eec---cee-e--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL----TVG---SYT-Y--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~----~~~---~~~-~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|..++.. ...+.|+|....... ... ... . .-.+||....+.......|+|.+++.+|+|.|.|.
T Consensus 15 vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa 94 (117)
T cd04981 15 LKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCA 94 (117)
T ss_pred EEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEEEEEE
Confidence 46899987643 567999997742211 110 111 0 11368888765555667899999999999999998
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 95 ~~~ 97 (117)
T cd04981 95 RGL 97 (117)
T ss_pred EEc
Confidence 754
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-06 Score=54.29 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=46.8
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEee--cCce-EEEEEEEeeeeecCCEEEEEEc
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE--KGEV-TTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
|+...+..++.++|.|.+.+..++.+.+.|.+++..+.............. ++.. ..+.|.+..-...+...|+|.+
T Consensus 8 p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V 87 (102)
T cd05768 8 PPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVV 87 (102)
T ss_pred cChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEe
Confidence 333344557889999999997767778999999987632211000001111 1222 2344555332223455899999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.+.
T Consensus 88 ~H~ 90 (102)
T cd05768 88 GHE 90 (102)
T ss_pred EeC
Confidence 986
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.7e-06 Score=51.51 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=43.9
Q ss_pred CCCcEEEEeEEeeCC----CCCceEEEEEcC-----e-EEEeeCC--------CCceeEEeecCceEEEEEEEeeeeecC
Q psy13371 100 EGSTINLTCSIKYSP----EPPAYIFWYHHD-----E-VISYDSS--------RGGVSVITEKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~----~p~~~v~W~~~~-----~-~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d 161 (212)
.|++++|.|.....+ .....+.|++.. . .+..... ...+.... ........|.|++++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence 488999999987553 123469999872 1 1111000 00111110 111123569999999999
Q ss_pred CEEEEEEcccC
Q psy13371 162 SGKYSCSPSNA 172 (212)
Q Consensus 162 ~g~y~C~~~n~ 172 (212)
+|.|.|.+.+.
T Consensus 80 ~G~Y~C~v~~~ 90 (106)
T cd05714 80 SGRYRCEVIDG 90 (106)
T ss_pred CEEEEEEEEcC
Confidence 99999999876
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.1e-06 Score=50.02 Aligned_cols=63 Identities=11% Similarity=0.195 Sum_probs=38.2
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeec-ceee-ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVG-SYTY-TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~-~~~~-~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+. |.+.|.|++++. .+... .... ..++.|.... .|.+......+.+.|+|.+.+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~--~l~~~~~~~~~~~~~~~~~~s-------~l~~~~~~~d~g~~~~C~v~h~ 67 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDK--ELKGVKLKEEDENGKTFTVTS-------SLRFQVDREDDGAPIICRVDHP 67 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCE--EccCceeeEecCCCCEEEEEE-------EEEEEcchhhCCCEEEEEEeCh
Confidence 4699999886 889999999873 22211 0111 1122333332 4555444455567899999985
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-06 Score=52.23 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=46.4
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeec-CCEEEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK-DSGKYSCS 168 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~ 168 (212)
+..|.......++.++|.|.+.+..++.+.+.|.++|..+.... .........+.....+.|.+. .+ ....|+|.
T Consensus 5 v~~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~-~~~~~~~~~dty~~~S~L~vt---~~~~~~~ysC~ 80 (96)
T cd07697 5 IFSPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGS-QKSEKDKDNDVYSTTSWLTVT---KDSLGKKFRCI 80 (96)
T ss_pred EECCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCe-EeccEecCCCEEEEEEEEEEC---chhCCCeEEEE
Confidence 33444444555677999999999877888899999998753221 111111111211122334443 32 23369999
Q ss_pred cccCC
Q psy13371 169 PSNAD 173 (212)
Q Consensus 169 ~~n~~ 173 (212)
+.+..
T Consensus 81 V~H~g 85 (96)
T cd07697 81 YKHEG 85 (96)
T ss_pred EEECC
Confidence 99864
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.8e-06 Score=55.43 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=53.3
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcceeeeec--ceeeec--CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--C
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDIHILTVG--SYTYTS--DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--P 73 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~--~~~~~~--~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~ 73 (212)
+.|.|... +...+.|+|+|.+. .+.... +..... .+|+.... ....+..|+|.+++.+|+|.|.|.+..- +
T Consensus 33 VtLsCs~t~s~~~~qVtWkK~~~-~IatY~~~g~~i~~~Fk~Rve~mS-~s~~~StItIknVt~sDeGcY~C~F~tfp~G 110 (189)
T PHA02987 33 VKISCNKTSSFNSILITWKKNNK-TIAGYGPCGPVIVDKFKNKIEYLS-KSFNESTILIKNVSLKDNGCYTCIFNTLLSK 110 (189)
T ss_pred EEEEEecCCCCccceEEEEEcCC-CEEEEecCCcEEChhhcCeEEEec-cCCCcceEEEEeCChhhCeEEEEEEEecCCC
Confidence 36899985 55788999999754 222111 111111 13565321 3445678999999999999999999874 2
Q ss_pred -ceeEEEEEEEec
Q psy13371 74 -VRSFFVNLNVVV 85 (212)
Q Consensus 74 -~~~~~~~l~v~~ 85 (212)
..+...-|+|..
T Consensus 111 ~~~~gt~CLtVt~ 123 (189)
T PHA02987 111 NNEKGVVCLNVTT 123 (189)
T ss_pred CCceeEEEEEEEc
Confidence 445555666654
|
|
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.1e-06 Score=53.65 Aligned_cols=81 Identities=27% Similarity=0.448 Sum_probs=51.2
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEE---Eee-----CCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVI---SYD-----SSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~---~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+.+....+..|+.++|.|...... ....+.|++.. ..+ ... ....++.....+.......|.|+++..+
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~-~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSW-TNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCC-CceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 445667889999999999986532 33458999853 211 110 0111233332211122356999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+...
T Consensus 83 Dsg~Y~C~~~~~ 94 (116)
T cd07706 83 DSAKYFCALSTL 94 (116)
T ss_pred HCEEEEEEEECC
Confidence 999999998753
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.6e-06 Score=51.00 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=44.0
Q ss_pred CCCcEEEEeEEeeCCCC----------CceEEEEEcCe----EE-Eee-------CCCCceeEEee-cCceEEEEEEEee
Q psy13371 100 EGSTINLTCSIKYSPEP----------PAYIFWYHHDE----VI-SYD-------SSRGGVSVITE-KGEVTTSYLLIQQ 156 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p----------~~~v~W~~~~~----~~-~~~-------~~~~~~~~~~~-~~~~~~~~l~i~~ 156 (212)
.|++++|.|.......+ ...+.|++... .+ ... .....+..... ........|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 48899999998743211 34699997521 11 111 11111222221 0011224699999
Q ss_pred eeecCCEEEEEEcccC
Q psy13371 157 AELKDSGKYSCSPSNA 172 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~ 172 (212)
++.+|+|.|.|.+.+.
T Consensus 81 l~~sDsG~Y~C~V~~g 96 (112)
T cd05900 81 LRSNDSGTYRCEVMHG 96 (112)
T ss_pred cccccCEEEEEEEecC
Confidence 9999999999999976
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-06 Score=51.44 Aligned_cols=66 Identities=26% Similarity=0.353 Sum_probs=42.9
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEE-----Ee---------eCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVI-----SY---------DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|++++|.|.... .....+.|++..... .. .....++.....+ ..|.|.+++.+|+|.|+
T Consensus 1 G~~VtL~c~~~~--~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-----~sL~I~~l~~~DsG~Y~ 73 (92)
T cd05741 1 GESVTLPVSNLP--ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-----GSLLIQNLTKEDSGTYT 73 (92)
T ss_pred CCcEEEEcccCC--CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-----ceEEEccCCchhcEEEE
Confidence 788999998754 344469999865321 00 0011122222222 35999999999999999
Q ss_pred EEcccCC
Q psy13371 167 CSPSNAD 173 (212)
Q Consensus 167 C~~~n~~ 173 (212)
|.+....
T Consensus 74 c~v~~~~ 80 (92)
T cd05741 74 LQIISTN 80 (92)
T ss_pred EEEEcCC
Confidence 9998763
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-06 Score=50.86 Aligned_cols=64 Identities=27% Similarity=0.396 Sum_probs=40.2
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC-c-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG-E-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+.+. .|.+++.|+++++.+.... .......+ . ...+.|.+.....++.+.|+|.+.|+
T Consensus 2 ~~L~C~~~~~-~P~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~ 67 (82)
T cd05761 2 VELTCTSSGS-KPAATIRWFKGDKELKGVK----LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHP 67 (82)
T ss_pred EEEEEEecCc-CcCCeEEEEECCEEccCce----eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeCh
Confidence 6899999876 2445799999998874211 11121122 1 12345666544556667999999987
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.7e-06 Score=51.56 Aligned_cols=76 Identities=16% Similarity=0.299 Sum_probs=47.9
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeE----EEee-----CCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV----ISYD-----SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.+.+|++++|.|..... .....+.|++.... +... .....+.....+.......|.|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~~-~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPPK-NRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCCC-CCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 57789999999987643 23345899986421 1100 01112232322222234579999999999999999
Q ss_pred EcccCC
Q psy13371 168 SPSNAD 173 (212)
Q Consensus 168 ~~~n~~ 173 (212)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 998653
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=50.55 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=39.0
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+.+ .+.+.|+.... .... . ..........|.|.++..+|.|.|+|.+.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~~~~-~~~~-~------------~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYDSNP-SFNS-N------------SRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEETEEE-EEEE-E------------EEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEecCC-ceee-e------------eeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 36899999997 89999991111 0000 0 000112455899999999999999999864
|
... |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.3e-06 Score=51.75 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=44.7
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeE---------EEeeCCC---------CceeEEeecCceEEEEEEEeeee
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV---------ISYDSSR---------GGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~---------~~~~~~~---------~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
.+.+|+.++|.|...... ....+.|++.... +...... ..+.............|.|.+++
T Consensus 2 ~v~~G~~vtL~C~~~~~~-~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGIS-ENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EEcCCCCEEEEEEEecCC-CCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 478899999999986432 2224899986431 1111000 11121111111223569999999
Q ss_pred ecCCEEEEEEccc
Q psy13371 159 LKDSGKYSCSPSN 171 (212)
Q Consensus 159 ~~d~g~y~C~~~n 171 (212)
.+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999753
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.6e-06 Score=50.19 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=42.0
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++.++|.|.+.+..++...+.|.++++........ .......++.. ..+.|.+ ...+.+.|+|.+.+.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~-~~~~~~~d~ty~~~s~l~v---~~~~~~~ytC~V~H~ 82 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVES-GEILPNGDGTYQLWVTLEV---PPEDKARYSCRVEHS 82 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccc-cceEECCCCeEEEEEEEEE---CCCCCCEEEEEEEeC
Confidence 67899999999976666689999998633211111 11122223322 2234444 334778999999886
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.1e-06 Score=49.99 Aligned_cols=69 Identities=19% Similarity=0.382 Sum_probs=40.7
Q ss_pred CcEEEEeEEeeCCC-CCceEEEEEcCeE----EE-eeC--------CCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 102 STINLTCSIKYSPE-PPAYIFWYHHDEV----IS-YDS--------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 102 ~~~~l~C~~~~~~~-p~~~v~W~~~~~~----~~-~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
++++|.|....... ....+.|++.... +. ... ....+....... .....|.|.+++.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS-LEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC-CCceEEEEccCCcccCEEEEE
Confidence 46899999875431 2335899986531 11 100 001111111111 123569999999999999999
Q ss_pred Eccc
Q psy13371 168 SPSN 171 (212)
Q Consensus 168 ~~~n 171 (212)
.+..
T Consensus 80 ~v~~ 83 (98)
T cd05718 80 EFAT 83 (98)
T ss_pred EEEe
Confidence 9864
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.8e-06 Score=52.79 Aligned_cols=80 Identities=21% Similarity=0.296 Sum_probs=49.2
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe---E--EE-eeC---------CCCceeEEeecCceEEEEEEEee
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE---V--IS-YDS---------SRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~---~--~~-~~~---------~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.|....+.+|+.++|.|...........+.|++... + +. ... ....+.....+.......|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 456678899999999998754321123489998642 1 11 110 01122222222222334699999
Q ss_pred eeecCCEEEEEEccc
Q psy13371 157 AELKDSGKYSCSPSN 171 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n 171 (212)
+..+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998764
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.8e-06 Score=50.56 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=41.4
Q ss_pred CCcEEEEeEEeeCCC-CCceEEEEEcCe--EEEeeCC-----------CCceeEEeec-CceEEEEEEEeeeeecCCEEE
Q psy13371 101 GSTINLTCSIKYSPE-PPAYIFWYHHDE--VISYDSS-----------RGGVSVITEK-GEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 101 g~~~~l~C~~~~~~~-p~~~v~W~~~~~--~~~~~~~-----------~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y 165 (212)
|+++.|.|....... ....+.|++... .+..... ...+...... .......|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 678999999853211 223588987552 2211100 0011111110 011124699999999999999
Q ss_pred EEEcccC
Q psy13371 166 SCSPSNA 172 (212)
Q Consensus 166 ~C~~~n~ 172 (212)
+|.+.+.
T Consensus 81 ~C~v~~~ 87 (100)
T cd05713 81 TCFFQSD 87 (100)
T ss_pred EEEEecC
Confidence 9999976
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.4e-06 Score=50.45 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=40.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|... .+...+.|+|++...... . .........+.|.+++.+|+|.|+|...+.
T Consensus 19 VtL~C~~~-~~~~~f~l~k~g~~~~~~--~------------~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 19 VTLRCQGP-YGAVEYRLYREGSTFAVK--K------------PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred EEEEEecC-CCCCEEEEEECCCCcccc--c------------cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 47999885 667788999887421110 0 012334568999999999999999999874
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.5e-06 Score=51.64 Aligned_cols=74 Identities=23% Similarity=0.438 Sum_probs=45.7
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCe--E---EEeeC-----CCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDE--V---ISYDS-----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~--~---~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
.+.+|++++|.|...........+.|++... . +.... ....+......+ ....|.|++++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~--~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG--NTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC--CEEEEEECCCChhhCEEEE
Confidence 4678999999999865311223389998642 1 11111 011122222222 3356999999999999999
Q ss_pred EEcccC
Q psy13371 167 CSPSNA 172 (212)
Q Consensus 167 C~~~n~ 172 (212)
|.+.+.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 998753
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.5e-06 Score=52.93 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=48.8
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec-Cce-EEEEEEEeeeeecC-CEEEEE
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK-GEV-TTSYLLIQQAELKD-SGKYSC 167 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~i~~~~~~d-~g~y~C 167 (212)
..|....+..++.++|.|.+.+..+..+.+.|.+++..+....... ......+ +.. ..+.|.+......+ ...|+|
T Consensus 8 ~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~-~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC 86 (115)
T cd05769 8 FPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATD-PQALRENTSTYSISSRLRVSATEWFNPRNTFTC 86 (115)
T ss_pred ECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccc-cceecCCCCeEEEEEEEEEChHHhccCCCeEEE
Confidence 3344344556778999999998766667899999998764221111 1112222 222 23456665443333 459999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+.+.
T Consensus 87 ~V~H~ 91 (115)
T cd05769 87 IVQFY 91 (115)
T ss_pred EEEEe
Confidence 99987
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.6e-06 Score=50.75 Aligned_cols=79 Identities=11% Similarity=0.169 Sum_probs=47.1
Q ss_pred CCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
.|....+..++.++|.|.+.+. .++.+.+.|.++++........ ......++.. ..+.|.+..-...+...|+|.+
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~--~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V 82 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ--PPESHNNATLSVTSTLNVSTDDWISGDTFQCKV 82 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec--ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEE
Confidence 3444456678999999999998 6788889999987533211111 1122223321 2234544332222344899999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.++
T Consensus 83 ~H~ 85 (96)
T cd07696 83 THP 85 (96)
T ss_pred ECC
Confidence 986
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=4e-06 Score=47.34 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=44.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.+.+...+.|++.+......... +.............|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-------RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE-------EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999999888999999977421111000 000001123345679999999999999999998753
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.1e-06 Score=49.37 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=45.9
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.++...+.+|++++|.|.... +...+.|++++...... .............+.|..++.+|+|.|.|...
T Consensus 6 a~p~~vV~~G~~VTL~C~~~~---~~~~f~l~k~g~~~~~~------~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 6 AHPSPVVPSGENVTLQCHSDI---RFDRFILYKEGRSKPVL------HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred ecCCCccCCCCeEEEEEecCC---CCCEEEEEECCCCCCce------ecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 344567889999999998753 23348999988643211 00000111222358999999999999999864
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=50.39 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=46.1
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC-c-eEEEEEEEeeeeecCCE-EEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG-E-VTTSYLLIQQAELKDSG-KYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~i~~~~~~d~g-~y~C~~~n~ 172 (212)
.....|+.++|.|.+.+..++.+.+.|+++|+.+.... .......++ . ...+.|.+.. ...|.+ .|+|.+.+.
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~---~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQ---PNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHR 91 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccc---cceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeC
Confidence 34557888999999998766677899999999874211 111112222 2 2234565543 334434 699999987
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.6e-06 Score=48.99 Aligned_cols=65 Identities=22% Similarity=0.330 Sum_probs=41.4
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce--EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV--TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+.+.. |.+.+.|+++++++.... .......++.. ..+.|.+.....++...|+|.+.|+
T Consensus 2 ~~LtC~a~g~~-P~~~ItW~k~g~~l~~~~---~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~ 68 (83)
T cd07705 2 AKLRCTSSGSK-PAANIKWRKGDQELEGAP---TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHE 68 (83)
T ss_pred EEEEEEecCcc-CCCEeEEEECCEECCCcc---eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECc
Confidence 68999998763 445799999998773211 11112222212 2345666555566777999999987
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.3e-05 Score=48.88 Aligned_cols=81 Identities=19% Similarity=0.308 Sum_probs=47.7
Q ss_pred CCcEEEEeEEeeCCC-----CCceEEEEEcC-----eEEE----------eeCCCCceeEEee-cCceEEEEEEEeeeee
Q psy13371 101 GSTINLTCSIKYSPE-----PPAYIFWYHHD-----EVIS----------YDSSRGGVSVITE-KGEVTTSYLLIQQAEL 159 (212)
Q Consensus 101 g~~~~l~C~~~~~~~-----p~~~v~W~~~~-----~~~~----------~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~ 159 (212)
|+.++|.|.....|. ....+.|.+.. .... ...+..++..... .......+|.|++++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 778999999764332 13468998752 1111 0111122332222 1111235699999999
Q ss_pred cCCEEEEEEcccC---CeeEEEEEE
Q psy13371 160 KDSGKYSCSPSNA---DVASVYVHV 181 (212)
Q Consensus 160 ~d~g~y~C~~~n~---~~~~~~~~v 181 (212)
+|+|.|.|.+... ....+.+.|
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V 106 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEV 106 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEE
Confidence 9999999999875 344444444
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.1e-06 Score=50.80 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=44.7
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCC---CceeEEeec--C----ceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR---GGVSVITEK--G----EVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~---~~~~~~~~~--~----~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
..|+.++|.|..... .....+.|++........... ......... + ......|.|++++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~-~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDG-TEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCC-cEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 368999999987531 233458999875433322210 111000000 0 001246999999999999999999
Q ss_pred ccCC
Q psy13371 170 SNAD 173 (212)
Q Consensus 170 ~n~~ 173 (212)
.+..
T Consensus 81 ~~~~ 84 (97)
T cd05775 81 NTKN 84 (97)
T ss_pred EcCC
Confidence 8763
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=47.01 Aligned_cols=63 Identities=10% Similarity=0.225 Sum_probs=38.1
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecce-ee-ecC-CceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSY-TY-TSD-QRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~-~~-~~~-~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|. |...|+|++++. .+..... .. ..+ +.|+.. ..|.+......|...|+|++.+.
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~--~l~~~~~~~~~~~~~~t~~~~-------s~l~~~~~~~d~g~~~tC~v~h~ 68 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQ--ELEGAPTSVLEDGNGKTFTVS-------SSVEFQVTREDDGAEITCSVGHE 68 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCE--ECCCcceeEEECCCCCEEEEE-------EEEEEEecchhCCCEEEEEEECc
Confidence 3689999996 889999999873 2221110 00 001 123322 14555455556667899999985
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.4e-05 Score=46.95 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=39.9
Q ss_pred CeeEeeeCCCCCc--eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPT--RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|.....+.| .|+|+..++..... ...+..+|.+..+...|+|.++|.+...
T Consensus 17 LtLtl~~~s~s~p~~~i~w~~P~n~~~~~-----------------~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 17 LTLTLHGSSNSLPAFKVEWRGPGNKSKQI-----------------LNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred EEEEEecCCCCCCCccEEEeCCCCcccee-----------------ccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 4689998665554 99999776432211 2234558999999999999999999654
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.3e-06 Score=48.75 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=40.5
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.+.+.. |.+.+.|+++|..+.... ........++. ...+.|.+.....++...|+|.+.|+
T Consensus 2 ~~LtC~a~gf~-P~~~itW~kng~~l~~~~--~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 2 MQLTCKTSGSK-PAADIRWFKNDKEIKDVK--YLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEEeCCcc-CCCEEEEEECCEECcCce--eeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEech
Confidence 68999998764 448899999998863211 00011111121 23345666544455666999999986
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.6e-06 Score=50.78 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=42.0
Q ss_pred CeeEeeeCCC-C-CceEEEEeeCcceeeeecc----eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGL-L-PTRVSWIRHRDIHILTVGS----YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.|. | ...|+|++++. .+.... .....++.|.... .|.+......|.|.|+|.+.+..
T Consensus 16 ~~L~C~a~g~~P~~~~i~W~~~g~--~~~~~~~~~~~~~~~~gt~~~~s-------~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 16 VTLTCLATGFYPPDITVTWLKNGK--ELTSGVTTTPPVPNSDGTYSVSS-------QLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred eEEEEEEeeEECCCcEEEEEECCE--ECCCceeccccccCCCCCEEEEE-------EEEECHHHhCCCCCEEEEEEeCC
Confidence 4689999998 6 47899999773 222111 1112234444432 56777776779999999998854
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-05 Score=49.37 Aligned_cols=82 Identities=22% Similarity=0.281 Sum_probs=50.2
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCC----CCCceEEEEEcCe-----EEEe-eCC-------CCceeEEeecCceEEEEEE
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSP----EPPAYIFWYHHDE-----VISY-DSS-------RGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~----~p~~~v~W~~~~~-----~~~~-~~~-------~~~~~~~~~~~~~~~~~l~ 153 (212)
..|....+.+|+.++|.|...... .....+.|++... .+.. ... ..++.....+.......|.
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 346677899999999999875321 1133589998642 1111 110 1122222112222345699
Q ss_pred EeeeeecCCEEEEEEcccC
Q psy13371 154 IQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~ 172 (212)
|++++.+|+|.|.|.+...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999988654
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.1e-06 Score=50.19 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=46.3
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCC-CCCceEEEEEcCeEEEeeCCCCceeEEeecC-ceEEEEEEEeeeeecCCEEEEEE
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSP-EPPAYIFWYHHDEVISYDSSRGGVSVITEKG-EVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
..|....+..++.++|.|.+.+.. +..+.|.|.++++. .. ... ......++ ....+.|.+..-.-.....|+|.
T Consensus 9 ~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~--~~t-~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~ 84 (99)
T cd04986 9 QRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EA--VQT-SAESDQCGCYSVSSVLPGCAEEWNKGEPFACT 84 (99)
T ss_pred ECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-Cc--EEc-CcccCCCCCEEEEEEEEeCHHHhcCCCeEEEE
Confidence 334434455688899999999876 45678999999875 11 111 11112233 22345566543222334579999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
+.++
T Consensus 85 V~H~ 88 (99)
T cd04986 85 VTHP 88 (99)
T ss_pred EECC
Confidence 9987
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-05 Score=47.71 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=44.7
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceE-EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..|...+|.|.+.+..++.+.+.|.++|+.+. .... .......++... .+.|. +...+...|+|.+.+.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~-~~~~p~~d~tyq~~s~l~---~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQ-SDLSFSKDWTFYLLKSTE---FTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEE-CcEEECCCCCEEEEEEEE---ECCCCCCeEEEEEEEC
Confidence 34666799999999877888899999999874 3211 112223333221 22233 3455666999999986
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-05 Score=48.69 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=43.1
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++..+|.|.+.+..++.+.+.|.++|+.+..+... .......++.. ..+.|.+ ...+...|+|.+.+.
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~-~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSE-TRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEE-eeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeC
Confidence 356679999999987777889999999876322111 11122233322 1233444 345556999999886
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-05 Score=49.23 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=51.7
Q ss_pred CeeEeeeCCCC--C-ceEEEEeeCcceeeee------cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLL--P-TRVSWIRHRDIHILTV------GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p--~-~~v~W~~~~~~~~~~~------~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+++.. . -.+.|+|+.+..+..- +.+.....+|+..+.+.+.+..+|+|.+++.+|.+.|.|...
T Consensus 16 v~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 16 ASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred EEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEee
Confidence 46899998864 3 5799999876421111 111112357888888888899999999999999999999774
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-05 Score=47.94 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=41.5
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCe----EEEeeCC-C--------CceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDE----VISYDSS-R--------GGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~----~~~~~~~-~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
|++++|.|...... ....+.|++... .+..... . ..+...... ......|.|.+++.+|+|.|.|
T Consensus 1 G~~vtL~C~~~~~~-~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~nv~~~D~G~Y~C 78 (97)
T cd05846 1 GGNVTLSCNLTLPE-EVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSL-GLNSTSITIWNVTLEDEGCYKC 78 (97)
T ss_pred CCcEEEEEEeCCCC-eeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCC-CCCccEEEEeCCceeeeEEEEE
Confidence 68899999875432 223589987532 1111100 0 111111111 1133569999999999999999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+...
T Consensus 79 ~~~~~ 83 (97)
T cd05846 79 IFNTF 83 (97)
T ss_pred EEEeC
Confidence 98753
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.2e-05 Score=45.41 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=44.6
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+..|++++|.|.....+.|...+.|...+...... ....+ .+|.+.++...|+|..+|.+...
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~--------~~~~~----ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI--------LNQDK----KTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee--------ccCCc----cEEEeceeCcccCCEEEEEEEEC
Confidence 3578899999999996555564459998654322100 01111 24899999999999999999643
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.8e-05 Score=46.59 Aligned_cols=70 Identities=10% Similarity=0.117 Sum_probs=44.5
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceE-EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..|+..+|.|.+.+..++...+.|.++++.+..... ........++... .+.|.+ ...+...|+|.+.++
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~-~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~ 82 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVV-STELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHS 82 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCce-ecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeC
Confidence 457889999999997767778999999987643211 1111222232222 233443 344556999999987
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.1e-05 Score=46.52 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=44.2
Q ss_pred cEEEEeEEeeCCCCCceEEEEEcCe----EEEe-eC--------CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHHDE----VISY-DS--------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~~~----~~~~-~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
.++|.|..... .....|.|.+... .+.. .. +-.++........ ...+|.|.+++.+|+|.|.|.+
T Consensus 2 ~vtL~C~~~~~-~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~-~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 2 KMKLECVYPKT-GVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTR-EDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CEEEEeEcCCC-CcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCC-CccEEEEcCCCcccCEEEEEEE
Confidence 57889987532 3455688987532 2211 11 1111222221111 2356999999999999999999
Q ss_pred ccC--CeeEEEEEE
Q psy13371 170 SNA--DVASVYVHV 181 (212)
Q Consensus 170 ~n~--~~~~~~~~v 181 (212)
..- ......+.|
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 874 444444444
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.4e-05 Score=48.52 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=43.5
Q ss_pred eeCCCcEEEEeEEeeCCCCCceEEEEEcCeE-------EEeeCC-C----------CceeEEeecCceEEEEEEEeeeee
Q psy13371 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEV-------ISYDSS-R----------GGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 98 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~-------~~~~~~-~----------~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
+.+|+.++|.|........ .+.|++.... +..... . ..+....... ....|.|++++.
T Consensus 3 v~~G~~vtL~C~~~~~~~~--~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~--~~~~L~I~~~~~ 78 (104)
T cd05720 3 AELGQKVELKCEVLNSSPT--GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS--NSFVLTLKNFQK 78 (104)
T ss_pred ccCCCeEEEEEEecCCCCC--cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC--CEEEEEECCCCH
Confidence 6789999999988543223 3899986421 111111 0 1112111111 345699999999
Q ss_pred cCCEEEEEEccc
Q psy13371 160 KDSGKYSCSPSN 171 (212)
Q Consensus 160 ~d~g~y~C~~~n 171 (212)
+|+|.|.|.+.+
T Consensus 79 sDsgtY~Ca~~~ 90 (104)
T cd05720 79 ENEGYYFCSVAS 90 (104)
T ss_pred HHCEEEEEEEcc
Confidence 999999998764
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.4e-05 Score=46.43 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEeeeeecCCEEEEEEcccC
Q psy13371 150 SYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 150 ~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+|.|.+++.+|+|.|.|.+.+.
T Consensus 79 asL~i~~v~~sD~G~Y~C~V~~g 101 (117)
T cd05901 79 ASLTIVKLRASDAGVYRCEVMHG 101 (117)
T ss_pred eEEEEcccccccCEEEEEEEEEC
Confidence 46999999999999999999876
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.2e-05 Score=52.72 Aligned_cols=76 Identities=25% Similarity=0.413 Sum_probs=47.2
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-------EEEEEEEeeeeecCCEEEEE
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-------TTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C 167 (212)
..++.+|+++.|.|.... +.....+.|.+..+.+..-...+......-.++. ..+.|.|.+++.+|+|.|.|
T Consensus 24 ~v~V~ege~VtLsCs~t~-s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 24 KITVSEHVNVKISCNKTS-SFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEcCCCCEEEEEecCC-CCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 356889999999999742 2233459999875433221122211111111111 23579999999999999999
Q ss_pred Eccc
Q psy13371 168 SPSN 171 (212)
Q Consensus 168 ~~~n 171 (212)
....
T Consensus 103 ~F~t 106 (189)
T PHA02987 103 IFNT 106 (189)
T ss_pred EEEe
Confidence 8864
|
|
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00012 Score=44.72 Aligned_cols=69 Identities=14% Similarity=0.248 Sum_probs=40.3
Q ss_pred cEEEEeEEeeCCC--CCceEEEEEcC----eEEEeeCC---------CCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 103 TINLTCSIKYSPE--PPAYIFWYHHD----EVISYDSS---------RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 103 ~~~l~C~~~~~~~--p~~~v~W~~~~----~~~~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
+++|.|.....+. ....|.|.+.. ..+..... ..++..... ......+|.|.+++.+|.|.|.|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~-~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKN-PSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcC-CCCCcceEEEcCCccccCEEEEE
Confidence 5789999874322 22358998742 12211111 111222221 11123569999999999999999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+.+.
T Consensus 81 ~v~t~ 85 (99)
T cd05886 81 EFATF 85 (99)
T ss_pred EEEeC
Confidence 99983
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.7e-05 Score=46.66 Aligned_cols=69 Identities=14% Similarity=0.315 Sum_probs=41.3
Q ss_pred CcEEEEeEEeeCCCCCceEEEEEcC----eEEEeeC---------CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 102 STINLTCSIKYSPEPPAYIFWYHHD----EVISYDS---------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 102 ~~~~l~C~~~~~~~p~~~v~W~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
++++|.|..... .....|.|.+.. ..+.... ...++..... ......+|.|.+++.+|.|.|.|.
T Consensus 1 ~~vtL~C~~~~~-~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~-~~~~d~sl~i~nv~~~D~G~Y~C~ 78 (96)
T cd05887 1 KNVTLKCRIQVN-ETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN-YSLLDATIMLENVGFSDIGVYICK 78 (96)
T ss_pred CCEEEEEEecCC-CcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC-CCCCccEEEEeCCCccccEEEEEE
Confidence 368899998643 344578998742 1221111 1112222221 111235699999999999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
+.+-
T Consensus 79 v~tf 82 (96)
T cd05887 79 AVTF 82 (96)
T ss_pred EEeC
Confidence 8763
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.9e-05 Score=47.16 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=42.9
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.++.++|.|.+.+..+..+.+.|.++|.. .... .........++.. ..+.|.+....-.....|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~-~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGV-KTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCc-EECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999997777888999999986 2111 1111122223322 23445543322223558999999864
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.7e-05 Score=45.62 Aligned_cols=70 Identities=19% Similarity=0.354 Sum_probs=40.7
Q ss_pred cEEEEeEEeeCCC-CCceEEEEEcCe-----EEE-eeCC--------CCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 103 TINLTCSIKYSPE-PPAYIFWYHHDE-----VIS-YDSS--------RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 103 ~~~l~C~~~~~~~-p~~~v~W~~~~~-----~~~-~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
+++|.|....... ....+.|++... .+. .... ..++.....+.......|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 5889999864331 233689998431 111 1100 011222221111123469999999999999999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+.+.
T Consensus 82 ~v~~~ 86 (100)
T cd05888 82 RVITF 86 (100)
T ss_pred EEEeC
Confidence 98873
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.2e-06 Score=48.34 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=43.3
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++.+.|.|.+.+..+..+.+.|.+++..+...... .......++.. ..+.|.+. ..+...|+|.+.+.
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~-~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVET-TPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHE 76 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEE-EEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEET
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeee-cccccccccceeeeEEEEec---CCCCCEEEEEEEEC
Confidence 388999999999876677789999999876211100 01111223322 23345544 45555999999886
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.3e-05 Score=45.18 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=38.8
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeeccee---eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSYT---YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|. |...|+|+|++. .+...... ...++.|.... .|.+..-...+...|+|++.+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~--~l~~~~~~~~~~~~~~t~~~~s-------~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDK--EIKDVKYLKEEDANRKTFTVSS-------TLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCE--ECcCceeeEeeCCCCCEEEEEE-------EEEEEcccccCCCEEEEEEech
Confidence 4689999994 789999999874 22211110 01123334332 5666544455566899999885
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0002 Score=48.18 Aligned_cols=76 Identities=20% Similarity=0.351 Sum_probs=48.3
Q ss_pred ceeeeCCCcEEEEeEEe-eCCCCCceEEEEEc----CeEEE---------eeCCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 95 DLHVDEGSTINLTCSIK-YSPEPPAYIFWYHH----DEVIS---------YDSSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
...+..|+++.|+|... ....+..++.|++. ...+. .+....++..+-.+. ...+|.|.+++.+
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~--gnvsLvI~~l~lS 97 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA--NTFFLVVTAANIS 97 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC--CeEEEEEEeeeec
Confidence 34677899999999875 33346667999994 22211 111112222221111 2246999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|.|.|+|.++..
T Consensus 98 DdGtY~C~fQkg 109 (221)
T PHA03376 98 HDGNYLCRMKLG 109 (221)
T ss_pred CCceEEEEEEcC
Confidence 999999999865
|
|
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.8e-05 Score=44.22 Aligned_cols=67 Identities=21% Similarity=0.403 Sum_probs=39.1
Q ss_pred cEEEEeEEeeCCCCCceEEEEEcCe-----EEEeeC---------CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHHDE-----VISYDS---------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
.+.|.|.......+...+.|++... .+.... ....+.............|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 3689998875433323589988542 111111 11122222222212345699999999999999996
Q ss_pred c
Q psy13371 169 P 169 (212)
Q Consensus 169 ~ 169 (212)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
|
|
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.4e-05 Score=44.82 Aligned_cols=69 Identities=23% Similarity=0.399 Sum_probs=42.6
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|+.+.+.|.+.+. .|.+.+.|+.++..+... ..........+.. ..+.|.+.....++...++|.+.++
T Consensus 14 ~~~~~~~C~s~~~-~P~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~ 83 (89)
T PF08205_consen 14 GEEVTLTCSSSGG-YPPPQITWYLDGGPVVAS--NTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHP 83 (89)
T ss_dssp TEEEEEEEEEEEE-BS-EEEEEEETTCEECEE--EEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEET
T ss_pred ceEEEEEEEeCCe-ECCeEEEEEECCCceeee--eeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECC
Confidence 6799999988754 355569999998776110 0001112222332 2356777655556777999999987
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.7e-05 Score=42.12 Aligned_cols=66 Identities=27% Similarity=0.459 Sum_probs=41.8
Q ss_pred EEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 104 ~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.+.+. +...+.|++++......... ..............|.+.+....|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~--~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGP--PPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCC--CCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 3689999763 44459999987654221110 011112222234569999999999999999998763
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00017 Score=44.85 Aligned_cols=78 Identities=8% Similarity=0.060 Sum_probs=49.5
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCC-ceEEEEEcCe-EEE---eeC-------CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPP-AYIFWYHHDE-VIS---YDS-------SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~-~~v~W~~~~~-~~~---~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+....+.+|+.++|.|.+.+..... ..+.|.++-. .++ ... ....+.....+....+.+|.|.+++.+
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 3456788899999999997654444 5788988532 211 110 011222223333334457999999999
Q ss_pred CCEEEEEEcc
Q psy13371 161 DSGKYSCSPS 170 (212)
Q Consensus 161 d~g~y~C~~~ 170 (212)
|.+.|.|...
T Consensus 85 DTa~Y~Ca~e 94 (115)
T cd05721 85 QTDIYFCKIE 94 (115)
T ss_pred HCeEEEEEee
Confidence 9999999754
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00022 Score=41.31 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=40.2
Q ss_pred eeEeeeCCC-CC-ceEEEEeeCcceeeee---cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQRKLKGL-LP-TRVSWIRHRDIHILTV---GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~~~~~-p~-~~v~W~~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.|.|.+.|. |. ..|.|+|++. .+... .......++.|.... .|.|......+...|+|.+...
T Consensus 3 ~L~C~a~gf~P~~i~v~W~k~g~-~~~~~~~~~~~~~~~~gt~~~~s-------~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 3 TLVCLVSGFYPPDITVTWLRNGQ-EVTSGVSTTDPLKNSDGTYFLSS-------YLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred EEEEEEEeEeCCCCEEEEEECCE-ECCCCEEECceEECCCCCEEEEE-------EEEEccccCCCCCEEEEEEEEc
Confidence 689999997 54 6999999773 12111 011112345555543 5677666667778999999764
|
|
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.002 Score=49.62 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=75.2
Q ss_pred CCCeEEEEEcccCCCCCEEEEEEecCC----CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEee-CCCCCceE
Q psy13371 46 EGDEWTLHIKWAQKRDAGVYECQLSTQ----PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKY-SPEPPAYI 120 (212)
Q Consensus 46 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v 120 (212)
..+...|.|.++...++|.|+=.+.+. ......+.+.+..+|.+...+ ..+.+|+...-.|.+.. +|....++
T Consensus 285 ~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~Svrl 362 (566)
T PHA03269 285 TTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIV 362 (566)
T ss_pred CCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEE
Confidence 445677999999999999998765432 123345555555555333332 25788999999999965 44456789
Q ss_pred EEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecC--CEEEEEEcc
Q psy13371 121 FWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKD--SGKYSCSPS 170 (212)
Q Consensus 121 ~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d--~g~y~C~~~ 170 (212)
.|+.++.++.... .........+|.+ ..|+|.+......| .-..+|.+.
T Consensus 363 rWf~ng~~V~~~~-it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~ 414 (566)
T PHA03269 363 KWTSNFGNIGKNF-ITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVL 414 (566)
T ss_pred EEEeCCcccCccc-cccceeecCCCceEEEEEEeccCccccCCCCCCceEEEE
Confidence 9999998875322 1122232344433 45566653322222 346788764
|
|
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=44.44 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=38.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
|.|.|.... +...+.|+|++........ ++. ......+.+.|..++.+|+|.|.|....
T Consensus 18 VTL~C~~~~-~~~~f~l~k~g~~~~~~~~------~~~-----~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 18 VTLQCHSDI-RFDRFILYKEGRSKPVLHL------YEK-----HHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred EEEEEecCC-CCCEEEEEECCCCCCceec------ccc-----cCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 579998876 5568999998853211000 000 0112345789999999999999999753
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=9.1e-05 Score=60.25 Aligned_cols=162 Identities=22% Similarity=0.317 Sum_probs=85.7
Q ss_pred eeEeeeCC--CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--CceeE
Q psy13371 2 LHQRKLKG--LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSF 77 (212)
Q Consensus 2 ~l~C~~~~--~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~ 77 (212)
.+.|.+.. .|.+.+.|..+...............+.-..- .......+.+...+.++.|+|+|.+.+. .....
T Consensus 116 qi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gs---s~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~ 192 (741)
T KOG3515|consen 116 QIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGS---SYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSF 192 (741)
T ss_pred EEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCc---eeccccceeeEEEEecCCceeEcccccccCccccc
Confidence 35664433 47889999987743222221111100000000 0012335778888899999999999984 23333
Q ss_pred EEEEEEec--cc--ceeeCC-CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 78 FVNLNVVV--PT--AEILGS-PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 78 ~~~l~v~~--~~--~~~~~~-~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
...+.+.. +. ..+... ......+|+.+.|.|.+.+. .|.....|+++........ .......+....+.+
T Consensus 193 ~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg-~P~~~~~w~~~s~~~~~~s----l~~~~~sg~~v~~~~ 267 (741)
T KOG3515|consen 193 AKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGG-NPSQQQTWYKDSRPQSESS----LLSQEPSGDTVSSTL 267 (741)
T ss_pred cceeEeecccccccceecchhhcCcccccceEEEEehhhcC-Ccchhhhhccccccchhhh----cccCCCCCCcccccc
Confidence 33333332 11 112221 22457789999999976654 4555699999887653220 001111222222334
Q ss_pred EEeeeeecCCEEEEEEccc
Q psy13371 153 LIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n 171 (212)
.+..-..++.-...|.+.|
T Consensus 268 ~~~~~r~~~~~~~kc~a~n 286 (741)
T KOG3515|consen 268 VLRVGRQDLQAQLKCKASN 286 (741)
T ss_pred cccccccchhhhhhccccC
Confidence 4443344445577899988
|
|
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.5e-05 Score=47.01 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=44.6
Q ss_pred CeeEeeeCCC-----CCceEEEEeeCcceeeeecce----eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-----LPTRVSWIRHRDIHILTVGSY----TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|+|.+.+. +...|.|.+++. .+...++. ....-++..+ .+...++++|.+.....- .|+|+|.+..
T Consensus 30 V~IPC~v~n~~~~ni~~m~VkWk~~~~-~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnYTCeVt~ 106 (130)
T PF08204_consen 30 VVIPCFVNNLEANNISEMYVKWKFKNK-DIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNYTCEVTE 106 (130)
T ss_dssp EEE--BBSS---SSGGGEEEEEEETTE-EEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEEEEEEEE
T ss_pred EEEEeEeccccccccceEEEEEEECCe-EEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccceEEEEEe
Confidence 3689999873 356899998774 33332211 0111234444 456778999999886655 8999999976
Q ss_pred CC-ceeEEEEEEE
Q psy13371 72 QP-VRSFFVNLNV 83 (212)
Q Consensus 72 ~~-~~~~~~~l~v 83 (212)
.. ..+..+.|..
T Consensus 107 ~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 107 LSREGETTIELKY 119 (130)
T ss_dssp TTEEEEEEEEEEE
T ss_pred cCCCceEEEEEEE
Confidence 42 3444444444
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0045 Score=46.85 Aligned_cols=124 Identities=15% Similarity=0.266 Sum_probs=73.5
Q ss_pred CCCCeEEEEEcccCCCCCEEEEEEecCC---CceeEEEEEEEecccc-eeeCCCceeeeCCCcEEEEeEEeeC-CCCCce
Q psy13371 45 REGDEWTLHIKWAQKRDAGVYECQLSTQ---PVRSFFVNLNVVVPTA-EILGSPDLHVDEGSTINLTCSIKYS-PEPPAY 119 (212)
Q Consensus 45 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~ 119 (212)
....+.+|.|.++...|+|.|+-...+. ....+.+.+.+...|+ +...+ ..+..|+...-.|.+..+ |....+
T Consensus 202 ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~Svr 279 (490)
T PHA03271 202 KTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVY 279 (490)
T ss_pred cccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceE
Confidence 3456778999999999999665544442 2223333444444332 22222 247889999999999754 445668
Q ss_pred EEEEEcCeEEEeeCCCCceeEE--eecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 120 IFWYHHDEVISYDSSRGGVSVI--TEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 120 v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
+.|+.+|............... ..++....+++.+.+...+..-..+|.+.
T Consensus 280 lrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~ 332 (490)
T PHA03271 280 VSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVA 332 (490)
T ss_pred EEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEE
Confidence 9999999877544433322212 22333344556554433334447788764
|
|
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00072 Score=44.25 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=39.3
Q ss_pred eeEeeeCCC-CC-ceEEEEeeCcceee----eec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 2 LHQRKLKGL-LP-TRVSWIRHRDIHIL----TVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 2 ~l~C~~~~~-p~-~~v~W~~~~~~~~~----~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
.|.|.+.|. |. ..|.|+|++..... ..+ ......++.|.+.. .|.+..-...+.+.|.|.+.+
T Consensus 57 ~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s-------~L~v~~~~~~~g~~ytC~V~H 129 (139)
T cd05771 57 TLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSS-------HLTLEPGTEDAGATYTCRVSH 129 (139)
T ss_pred EEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEE-------EEEecCCccCCCCEEEEEEEc
Confidence 689999995 54 58999998742111 001 11112345555543 577765555556689999987
Q ss_pred C
Q psy13371 72 Q 72 (212)
Q Consensus 72 ~ 72 (212)
.
T Consensus 130 ~ 130 (139)
T cd05771 130 V 130 (139)
T ss_pred C
Confidence 5
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00082 Score=40.72 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=37.2
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+++.|.+.+ .|...|+|+++....... ......++++++.. .|.+.-....|...|+|++.+.
T Consensus 18 ~va~C~s~~gkPaa~IsW~~~~~g~~~~--~~~~~~~gt~tv~S-------~l~~~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 18 PVAKCVSANGRPPARISWSSTLGGNANT--TSKENGDGTVTVTS-------EYSLVPTPEANGKEVTCKVEHE 81 (95)
T ss_pred EEEEEEcCCCCCCcEEEEEcCCCCCeeE--EEEeCCCCCEEEEE-------EEEEecCHHHCCCEEEEEEeCc
Confidence 368998774 699999999874221111 11112234555542 4565444444455799999985
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00062 Score=41.20 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=35.5
Q ss_pred CeeEeeeCCC-CC-ceEEEEeeCcceeeee--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGL-LP-TRVSWIRHRDIHILTV--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.|. |. ..|+|++++....... .......++.|.... .|.+ ...+.+.|+|.+.+.+
T Consensus 17 ~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s-------~l~v---~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 17 LTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWV-------TLEV---PPEDKARYSCRVEHSG 83 (93)
T ss_pred EEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEE-------EEEE---CCCCCCEEEEEEEeCC
Confidence 4699999995 54 4999999873111110 011111223333321 3444 3447889999998753
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=39.99 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=35.7
Q ss_pred eeEeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
++.|.+. |.|.+.|.|+++....... ......++.+.+.. .|.+.-....|.-.|+|++.+.
T Consensus 19 va~C~s~~gkP~a~ItW~~~~~~~~~~--~~~~~~~g~~tv~S-------~l~~~p~~~d~G~~~tC~v~h~ 81 (95)
T cd05719 19 VATCVSANGKPPATISWETTLGGEAET--QSKENPNGTVTVTS-------EYRLVPSREANGKELTCVVSHP 81 (95)
T ss_pred EEEEECCCCcCCCEEEEEeCCCCccee--EeecCCCCCEEEEE-------EEEEecCHHHCCCEEEEEEeCc
Confidence 5789985 6799999999863211111 11111233444442 4555444444444699999885
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0039 Score=47.84 Aligned_cols=119 Identities=21% Similarity=0.246 Sum_probs=73.6
Q ss_pred EEEEEcccCCCCCEEEEEEecCC-C--ceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEee-CCCCCceEEEEEc
Q psy13371 50 WTLHIKWAQKRDAGVYECQLSTQ-P--VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHH 125 (212)
Q Consensus 50 ~~L~i~~~~~~d~G~Y~C~~~~~-~--~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~ 125 (212)
..|+|..+...++|.|+=...+. + .....+.+....+|.+...+ ..+.+|+...-.|.+.. +|....++.|+.+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 66999999999999998665442 2 22333444434455433332 24788999999999965 4445678999999
Q ss_pred CeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeee-cCCEEEEEEcc
Q psy13371 126 DEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAEL-KDSGKYSCSPS 170 (212)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~-~d~g~y~C~~~ 170 (212)
+.++..............++. ...|+|.+.+... +..-..+|.+.
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 998862222112222233343 4556676665433 34447888764
|
|
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0049 Score=46.88 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=74.3
Q ss_pred EEEEEcccCCCCCEEEEEEecCC-C--ceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEee-CCCCCceEEEEEc
Q psy13371 50 WTLHIKWAQKRDAGVYECQLSTQ-P--VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHH 125 (212)
Q Consensus 50 ~~L~i~~~~~~d~G~Y~C~~~~~-~--~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~ 125 (212)
..|.|..+....+|.|+=...+. . .....+.+....+|.+...+ ..+.+|+...-.|.+.. +|.....+.|+.+
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 35999999999999998886653 2 22334455544455433332 24788999999999965 4445668999999
Q ss_pred CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeec-CCEEEEEEcc
Q psy13371 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK-DSGKYSCSPS 170 (212)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~~~ 170 (212)
+.++..............++....|++.+.+.... ..-..+|.+.
T Consensus 260 g~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~ 305 (466)
T PHA03270 260 GDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFT 305 (466)
T ss_pred CccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEE
Confidence 98774322222233334445445566666544322 2237788774
|
|
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00091 Score=41.06 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=40.4
Q ss_pred CeeEeeeCCC-C-CceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-L-PTRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
..|.|.+.|. | ...|.|+|++. .+..+ ......++.|+... .|.+......+...|+|.+...
T Consensus 20 ~~L~C~~~gfyP~~i~v~W~~~g~--~~~~~~~~~~~~~~~dgty~~~s-------~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 20 ATLVCLINDFYPGFATVQWKVDGA--TVSSGVQTSTTEQQSDNTYSLSS-------YLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred cEEEEEEEeEECCCCEEEEEECCE--ECcccEeccccEECCCCCEEEEE-------EEEEcHHHhCCCCeEEEEEEec
Confidence 3689999995 5 67899999873 22111 11122255666653 5666555555567899999875
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0033 Score=38.13 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=39.6
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.....+.|.+.+. .|.+++.|+++.... .........++. ...+.|.+.....+|...|+|.+.|+
T Consensus 15 ~~~~va~C~s~~g-kPaa~IsW~~~~~g~-----~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 15 IPVPVAKCVSANG-RPPARISWSSTLGGN-----ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHE 81 (95)
T ss_pred CccEEEEEEcCCC-CCCcEEEEEcCCCCC-----eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCc
Confidence 3457899998755 577779999872211 111112222333 23456777555555666999999997
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00033 Score=38.71 Aligned_cols=52 Identities=31% Similarity=0.479 Sum_probs=34.1
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..|..++|+|+..+ .. +.|.++++...- .. ..+.+.+-. ++.|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~---~~--i~W~~n~~~~~g--~~--------------~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSG---DD--IKWKKNDQVSQG--SD--------------EKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCC---CC--ceEEeCCccCCC--CC--------------ceEEeeccC-CCCceEEEEeCCC
Confidence 35889999998642 22 899999854421 10 014444444 8899999998654
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0014 Score=39.76 Aligned_cols=63 Identities=16% Similarity=0.293 Sum_probs=38.3
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|+|++. .+..+ ......++.|+... .|.+..-...+...|.|.+...+
T Consensus 18 ~L~C~a~gFyP~~I~vtW~~dg~--~~~~~~~~s~~~~~~~~Ty~~~S-------~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 18 QLLCLISGYTPGTIEVEWLVDGQ--VATLVAASTAPQKEEGSTFSTTS-------ELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred EEEEEEEeEECCCCEEEEEECCE--ECcCceeecccEECCCCcEEEEE-------EEEEchHHhcCCCeEEEEEEECC
Confidence 589999995 5 47899999873 22111 11222334455442 45555444445678999998753
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0024 Score=38.76 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=38.9
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
......+.|.+.+. .|.+++.|+++.... .........++. ...+.|.+.....++...|+|.+.|+
T Consensus 14 ~~~~~va~C~s~~g-kP~a~ItW~~~~~~~-----~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~ 81 (95)
T cd05719 14 GEPVTVATCVSANG-KPPATISWETTLGGE-----AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHP 81 (95)
T ss_pred CCccEEEEEECCCC-cCCCEEEEEeCCCCc-----ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCc
Confidence 34467889999654 466679999862111 111111222232 23456777544455555999999987
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0015 Score=39.94 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=35.1
Q ss_pred CeeEeeeCCC-CCce--EEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCE-EEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTR--VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~--v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~ 72 (212)
+.|+|.+.|. |... |.|+|++ ..+........... ......+|.+. +.++|.| .|+|++...
T Consensus 19 ~tL~C~v~g~~P~a~L~i~W~rG~--~~l~~~~~~~~~~~-------~~~~~stlt~~-~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 19 YTLQCDVPGVAPRQNLTVVLLRGN--ETLSRQPFGDNTKS-------PVNAPATITIT-VDREDHGANFSCETELD 84 (100)
T ss_pred EEEEEEEcCcCCCCcEEEEEeeCC--EEcccceeccccCC-------CceeEEEEEEe-cchhhCCcEEEEEEEec
Confidence 3689999995 7665 7999987 33321111000000 11123356664 4455665 799999863
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0031 Score=37.66 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=37.2
Q ss_pred eeEeeeCC-CCCceEEEEeeCcceeeee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKG-LLPTRVSWIRHRDIHILTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~-~p~~~v~W~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.+.|.+.+ +|.+.|.|+.++....... .......++.+.... .|.+..-...+...++|.+.+..
T Consensus 18 ~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S-------~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 18 TLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSS-------TLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp EEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEE-------EEEEETTGGGTTEEEEEEEEETT
T ss_pred EEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEE-------EEEEEcChHHCCeEEEEEEECCc
Confidence 68997665 5999999999875321111 111122233444432 56665444455667999998753
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0029 Score=38.47 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=37.3
Q ss_pred eeEeeeCCC--C-CceEEEEeeCcceeeee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL--L-PTRVSWIRHRDIHILTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~--p-~~~v~W~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|+|+|+++...... .......|+.|++.. .|.+..-...+...|.|.+...+
T Consensus 18 tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s-------~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 18 KLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTS-------TLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred EEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEE-------EEEeCHHHccCCCcEEEEEECCC
Confidence 589999998 4 45889999864221111 111112244455543 45554433334557999998753
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0015 Score=36.36 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=31.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+ ...|.|+++. .+... .+..|-+-+...+-.|.|.|...+
T Consensus 9 V~L~C~~----~tsi~W~kG~--~~~~~-------------------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 9 VFLKCNG----ATNITWKKGK--EILEV-------------------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred EEEEecC----CCcEEEecCc--ccccc-------------------cccEEeccCcccCCCcceEecCcc
Confidence 4689976 2569999933 22221 123667777888889999999876
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0018 Score=35.19 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=27.8
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCCC-ceeEEEEEEEe
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVV 84 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~ 84 (212)
+...|-|-++..+|+|.|.|.+.+.. .....+.|+|.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 34467788999999999999999863 44555666664
|
|
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0036 Score=39.17 Aligned_cols=62 Identities=15% Similarity=0.332 Sum_probs=35.9
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeecceee--ecC-CceEEEeeCCCCeEEEEEcccCCCCCE-EEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVGSYTY--TSD-QRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~~~--~~~-~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|+|++. .+....... ..+ +.|.... .|.+.. ...|.| .|+|.+.+.+
T Consensus 25 tL~C~a~gF~P~~i~v~W~kng~--~~~~~~~~~~p~~d~~ty~~~S-------~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 25 NFTCSAHGFSPRDITVKWLKNGN--ELSAEQPNITPEGDSVSYNVTS-------TVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred EEEEEEeeEeCCCCEEEEEECCE--ECcccccceeeCCCCCcEEEEE-------EEEEEC-ccccccCceEEEEEeCC
Confidence 689999996 5 46999999874 222111111 112 2444432 455543 444544 5999998853
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0014 Score=38.64 Aligned_cols=62 Identities=15% Similarity=0.285 Sum_probs=37.7
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceee--eecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHIL--TVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|++++..... .........++.|.+.. .|.+. ..+...|.|.+....
T Consensus 12 ~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s-------~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 12 TLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTS-------SLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp EEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEE-------EEEEE---TTTTGGEEEEEEETT
T ss_pred EEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeE-------EEEec---CCCCCEEEEEEEECC
Confidence 689999995 5 458999987741110 01111113456666653 45555 455558999998753
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0061 Score=36.79 Aligned_cols=59 Identities=8% Similarity=0.272 Sum_probs=36.7
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeecc----eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVGS----YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|+|+|++. .+. +. .....|+.|+... .|.+ ...+...|.|.+...+
T Consensus 19 ~L~C~a~gFyP~~i~v~W~~dg~--~~~-~~~~~~~~p~~d~tyq~~s-------~l~~---~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 19 VLNCYVTGFHPPDIEIRLLKNGV--KIP-KVEQSDLSFSKDWTFYLLK-------STEF---TPTKGDEYACRVRHNS 83 (93)
T ss_pred EEEEEEEEEeCCCCEEEEEECCE--ECC-CcEECcEEECCCCCEEEEE-------EEEE---CCCCCCeEEEEEEECC
Confidence 589999995 4 57889999873 222 21 1112344444432 3433 4567778999998753
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0022 Score=34.83 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=26.4
Q ss_pred EEEEeeeeecCCEEEEEEcccC---CeeEEEEEEeec
Q psy13371 151 YLLIQQAELKDSGKYSCSPSNA---DVASVYVHVLNG 184 (212)
Q Consensus 151 ~l~i~~~~~~d~g~y~C~~~n~---~~~~~~~~v~~~ 184 (212)
.|.|-+...+|+|.|.|...|+ ...++.+.|..+
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 3889999999999999999987 445555555443
|
|
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0078 Score=36.46 Aligned_cols=60 Identities=18% Similarity=0.345 Sum_probs=35.5
Q ss_pred eeEeeeCCC-CC-ceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-LP-TRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. |. ..++|+|++. .+..+ ......|+.|.... .|.+ ...+...|.|.+...+
T Consensus 18 ~L~C~~~gFyP~~i~v~W~~~g~--~~~~~~~~~~~~~~~dgTy~~~s-------~L~~---~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 18 LLVCHVWGFYPPEITVKWFKNGQ--EETEGVVSTELIPNGDWTYQILV-------MLET---TPSRGDTYTCVVEHSS 83 (94)
T ss_pred EEEEEEeeecCCCCEEEEEECCe--ecCCCceecceEECCCCcEEEEE-------EEEE---cCCCCCEEEEEEEeCC
Confidence 689999995 54 5889999874 22111 11112233444432 3443 3345668999998753
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.1 Score=39.72 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=46.2
Q ss_pred eeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEE-------------eeCCCCceeEEeec----CceEEEEEEEeeee
Q psy13371 97 HVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVIS-------------YDSSRGGVSVITEK----GEVTTSYLLIQQAE 158 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~-------------~~~~~~~~~~~~~~----~~~~~~~l~i~~~~ 158 (212)
.+..|..+.+.|..+- ..+...+..|+..+-+.. .+......+.+... .....++|+|.++.
T Consensus 275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~ 354 (500)
T PHA02914 275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH 354 (500)
T ss_pred EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence 4566999999998863 223444578987653321 01011111111111 12234679999999
Q ss_pred ecCCEEEEEEcccC
Q psy13371 159 LKDSGKYSCSPSNA 172 (212)
Q Consensus 159 ~~d~g~y~C~~~n~ 172 (212)
.+..|-|+|.|...
T Consensus 355 I~N~GCY~~~a~~g 368 (500)
T PHA02914 355 INNAGCYEAQAFMG 368 (500)
T ss_pred EEcCCceEEEEecC
Confidence 99999999999864
|
|
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0095 Score=36.07 Aligned_cols=60 Identities=17% Similarity=0.307 Sum_probs=36.7
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | .-.|+|+|++. .+..+ ......|+.|.... .|.+. +.+...|+|.+...+
T Consensus 19 tL~C~a~gFyP~~I~v~W~~~g~--~~~~~~~~~~~~~~~Dgty~~~s-------~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 19 TLICFVDNFFPPVLNVTWLKNGV--PVTDGVSETRYYPRQDLSFQKFS-------YLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred EEEEEEEEEECCcCEEEEEECCe--EccCceEEeeeEeCCCCcEEEEE-------EEEEE---CCCCCeEEEEEEeCC
Confidence 589999995 5 57889999873 22211 11122345555542 45543 346668999998753
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0069 Score=36.76 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=36.9
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeee--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTV--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|+|+|++.. .... .......++.|.... .|.+..-.-.....|+|.+...+
T Consensus 20 ~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s-------~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 20 TLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASS-------QLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred EEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEE-------EEEEeHHHcCCCCcEEEEEEeCC
Confidence 689999996 5 568899998742 1110 011111245555543 45554432223567999998754
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0084 Score=33.49 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=38.0
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC-CeeEEE
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA-DVASVY 178 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~-~~~~~~ 178 (212)
..+.+.|.|... -. +.|++ |....... . .+|.+.....+-.|.|.|.+.+. ....+.
T Consensus 5 ~~~~V~L~C~~~----ts--i~W~k-G~~~~~~~----------~-----~tlnLGs~~~DPRG~Y~C~~s~~~~~~~LQ 62 (69)
T cd07691 5 SEGKVFLKCNGA----TN--ITWKK-GKEILEVS----------N-----TLLDLGSRINDPRGTYSCKESEPNKEKTLQ 62 (69)
T ss_pred cCceEEEEecCC----Cc--EEEec-Cccccccc----------c-----cEEeccCcccCCCcceEecCccCCCcEEEE
Confidence 345789999651 23 99998 54331110 0 23888888889999999999873 344444
Q ss_pred EE
Q psy13371 179 VH 180 (212)
Q Consensus 179 ~~ 180 (212)
+.
T Consensus 63 Vy 64 (69)
T cd07691 63 VY 64 (69)
T ss_pred EE
Confidence 43
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.013 Score=36.87 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=37.0
Q ss_pred eeEeeeCCC-CC-ceEEEEeeCcceeeeecce----eeec-CCceEEEeeCCCCeEEEEEcccCCCC-CEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-LP-TRVSWIRHRDIHILTVGSY----TYTS-DQRFSAIHRREGDEWTLHIKWAQKRD-AGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~----~~~~-~~r~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. |. ..|.|+|++. .+..+.. .... ++.|+... .|.|......+ ...|.|.+...+
T Consensus 22 tL~Cla~gFyP~~I~V~W~kng~--~l~~g~~~~~~~~~~~~gTYs~~S-------~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 22 TLVCLATGFYPDHVSLSWKVNGK--EVTDGVATDPQALRENTSTYSISS-------RLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred EEEEEEEeEeCCCcEEEEEECCE--ECCCCcccccceecCCCCeEEEEE-------EEEEChHHhccCCCeEEEEEEEeC
Confidence 689999996 54 5899999773 2221110 1111 13444442 56665444334 567999998753
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.023 Score=34.47 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=42.1
Q ss_pred eeeeCCCcEEE-EeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINL-TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l-~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+.+|..+.+ .|.+.+. .|.+++.|+.+..... ........++.. ..+.+.+.....+|.-.++|.+.++
T Consensus 11 ~~~~~g~~~~vA~C~sa~g-kPaa~IsW~~~~~G~~-----~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEG-RPAADVTWETNVYGTS-----ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred eEeecCcceeEEEEEccCC-ccCCEeEEeCCCCCcc-----ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence 45677888888 8988655 5777799997532211 001111122222 2344666544555666999999987
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0053 Score=34.00 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=28.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|...+.. +.|.+++. .... .+..+.+.+-. +++|.|.|.+.+.
T Consensus 10 VtlTCP~~~~~---i~W~~n~~--~~~g-------------------~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 10 VTVTCPLSGDD---IKWKKNDQ--VSQG-------------------SDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEEECCCCCCC---ceEEeCCc--cCCC-------------------CCceEEeeccC-CCCceEEEEeCCC
Confidence 46889865332 99999872 2210 11123334444 8999999998753
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0026 Score=45.21 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=36.4
Q ss_pred CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 11 LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 11 p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
.+|...|..+++. .++ .+++..+. +.+.|.+.+.+.+++|.|+|....
T Consensus 11 iDP~y~W~GP~g~-~l~-------gn~~~nIT-----~TG~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 11 IDPTYLWTGPNGK-PLS-------GNSYVNIT-----ETGKLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CCCceEEECCCCc-ccC-------CCCeEEEc-----cCceEEeeccccccCCceEEEEEE
Confidence 5789999987753 332 23455665 566799999999999999998764
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0095 Score=36.67 Aligned_cols=65 Identities=11% Similarity=0.209 Sum_probs=35.9
Q ss_pred CeeEeeeCCC-C-CceEEEEeeCcceeeeecc---e-eee--cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-L-PTRVSWIRHRDIHILTVGS---Y-TYT--SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~---~-~~~--~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|. | ...|+|+|++. .+..... . ... .++.|+... .|.+..-...+...|+|.+...
T Consensus 19 ~tL~C~a~gFyP~~i~v~W~k~g~-~~~~~~~~~~~~~~~~~~dgTy~~~s-------~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 19 ATLTCLVKGFSPSDIFVKWLQNGQ-PLSKQKYVTTAPMQEPGGNESYFLYS-------KLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred eEEEEEEeeEeCCCCEEEEEECCE-ECCcccccccCcccccCCCCeEEEEE-------EEEEcHHHhcCCCcEEEEeEeC
Confidence 3689999995 5 34789999873 2111110 0 000 124444432 4555333333556799999875
Q ss_pred C
Q psy13371 73 P 73 (212)
Q Consensus 73 ~ 73 (212)
+
T Consensus 91 ~ 91 (102)
T cd05768 91 A 91 (102)
T ss_pred C
Confidence 3
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.016 Score=35.37 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=37.2
Q ss_pred eeEeeeCCC--C-CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL--L-PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~--p-~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|.+++..... ........++.|.+.. .|.|..-.-.....|+|++.+.+
T Consensus 23 tLtClV~~f~~P~~i~V~W~~~g~~~~~-~t~~~~~~dgTys~~S-------~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 23 SLTCTLSGLRDPEGAVFTWTPSGGKEAV-QTSAESDQCGCYSVSS-------VLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred EEEEEEeccCCCCCeEEEEEECCccCcE-EcCcccCCCCCEEEEE-------EEEeCHHHhcCCCeEEEEEECCC
Confidence 689999994 3 468999998753111 1111222345555553 46665332233345999998753
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.026 Score=34.25 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=40.6
Q ss_pred eeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCE-EEEEEccc
Q psy13371 97 HVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSG-KYSCSPSN 171 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n 171 (212)
.+.+|..+++.|.+.+. |.....+.|+++...+..+..... ............+++... .+|.| .|.|.|.-
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~--~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L 84 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLED--MDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKL 84 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccc--cccCCCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence 35789999999999753 333467899887766532211100 000000111123555443 56666 99999864
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.042 Score=33.36 Aligned_cols=60 Identities=8% Similarity=-0.002 Sum_probs=36.2
Q ss_pred EeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 4 QRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 4 ~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.|.+. |.|...|.|+.+..+... .......++.+++.. .+.+...+..|.-.++|.+.+.
T Consensus 23 ~C~sa~gkPaa~IsW~~~~~G~~~--~~~~~~~ngT~TV~S-------~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 23 ACCAAEGRPAADVTWETNVYGTSE--SHSQEHPNGTTTVTS-------EYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred EEEccCCccCCEeEEeCCCCCccc--eeeecCCCCCEEEEE-------EEEEEeCHHHCCcEEEEEEeCc
Confidence 56655 469999999976432211 111222345666663 5666555555556799999875
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.035 Score=33.72 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=17.1
Q ss_pred eeEeeeCCC-C-CceEEEEeeCc
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRD 22 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~ 22 (212)
.|.|.+.|. | .-.|.|+|++.
T Consensus 20 tL~C~a~gFyP~~I~v~W~kng~ 42 (96)
T cd07697 20 IYLCLLENFFPDVIQVHWREGNS 42 (96)
T ss_pred EEEEEEEEEeCCCeEEEEEECCE
Confidence 589999995 5 56889999873
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.053 Score=33.20 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=28.4
Q ss_pred CceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEEEEE
Q psy13371 37 QRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNV 83 (212)
Q Consensus 37 ~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v 83 (212)
.|+.... ++..|.|+.++..|+|.|.-++.+.........+.|
T Consensus 62 ~r~~F~~----enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqV 104 (108)
T PF11465_consen 62 NRFNFTS----ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQV 104 (108)
T ss_dssp HHEEEET----TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEE
T ss_pred ceEeeec----cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEE
Confidence 4565553 567899999999999999999987533333333333
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.094 Score=37.76 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=34.8
Q ss_pred eeEeeeCCC-----CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQRKLKGL-----LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.++|.++.. ....++|.+++. .+...++ . +..+|+++.. ..-.|+|+|++.+.
T Consensus 35 ~IpC~v~n~~~~ni~~~~V~Wkf~~~-~If~~n~---------------t-n~aSL~~~f~-~~l~GNYTCEv~~l 92 (286)
T PHA03042 35 VIVCNLNLLIYYNISNIHINWKFNNK-VIFKKNN---------------T-NTSSLKFNFS-KNLSGNYTCEAINK 92 (286)
T ss_pred EEEeecCChhhcCccceEEEEEeCCe-eEEEecC---------------C-cceEEEEecc-ccCCCceeEEEeec
Confidence 588999885 467899999874 3332221 1 3346776443 34589999999874
|
|
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.078 Score=33.99 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=36.5
Q ss_pred eeCCCcEEEEeEEee---CCCCCceEEEEEcCeEEEeeCCCCceeEEe-------ecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 98 VDEGSTINLTCSIKY---SPEPPAYIFWYHHDEVISYDSSRGGVSVIT-------EKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 98 ~~~g~~~~l~C~~~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
..-++++.|+|.+.. ...+...+.|..++..+-............ .+-.....+|.+...+.- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 345788999999853 122445689999887653322211111100 110011134777654444 899999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+...
T Consensus 103 eVt~~ 107 (130)
T PF08204_consen 103 EVTEL 107 (130)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 99765
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.0041 Score=50.69 Aligned_cols=74 Identities=30% Similarity=0.493 Sum_probs=51.4
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....+....+..+...++.|...-. .|.+.+.|++++....... ......+.. +.+..+...|.|.|+|.
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~-~paae~~w~k~e~~~~pd~----n~~~~~d~~-----li~~~arlsd~~nytc~ 201 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEG-DPKAEVEWLKNEVVIDPDA----NVIRASDHN-----LIISQARLSDSGNYTCE 201 (909)
T ss_pred hccChhhheecccccccccccCccc-chhhhhhccccCCCCCccc----cchhhhcCC-----ccccchhhhhcccceee
Confidence 3444556678888899999987432 3555689999987664311 112222322 88889999999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
|.|-
T Consensus 202 a~ni 205 (909)
T KOG1480|consen 202 ATNI 205 (909)
T ss_pred eehh
Confidence 9874
|
|
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.43 Score=34.51 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=38.3
Q ss_pred eCCCcEEEEeEEeeC---CCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYS---PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~---~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.-++++.+.|.+..- .-....+.|..++...-..+..+ .++|.+ +-...-.|.|+|.+.+.
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn------------~aSL~~-~f~~~l~GNYTCEv~~l 92 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN------------TSSLKF-NFSKNLSGNYTCEAINK 92 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc------------ceEEEE-eccccCCCceeEEEeec
Confidence 347789999998531 11244589999988664322111 123555 34455689999999875
|
|
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.16 Score=38.06 Aligned_cols=23 Identities=17% Similarity=0.415 Sum_probs=20.6
Q ss_pred cEEEEeEEeeCCCCCceEEEEEc
Q psy13371 103 TINLTCSIKYSPEPPAYIFWYHH 125 (212)
Q Consensus 103 ~~~l~C~~~~~~~p~~~v~W~~~ 125 (212)
.+.|.|.+.+..+..+.+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999998878888999999
|
|
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=1.6 Score=34.46 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=31.0
Q ss_pred EeeeCCC-C--CceEEEEeeCcceeee-e--cceeeecCCceEEEeeCCCCeEEEEEcccCCCC--CEEEEEEecC
Q psy13371 4 QRKLKGL-L--PTRVSWIRHRDIHILT-V--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRD--AGVYECQLST 71 (212)
Q Consensus 4 ~C~~~~~-p--~~~v~W~~~~~~~~~~-~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d--~G~Y~C~~~~ 71 (212)
.|.+.++ | .-.+.|+++++ .+.. . .......++.|+..+ .|++......| .-..+|.+.-
T Consensus 348 tC~vA~YYPp~SvrlrWf~ng~-~V~~~~it~t~~~~~dGlFSrVS-------TLtlp~~~~~d~~PPsLrCeV~W 415 (566)
T PHA03269 348 YCKVNKYYPPHSVIVKWTSNFG-NIGKNFITDAIKENADGLFSSVS-------ALHIPAQKNADYPPPAIQCNVLW 415 (566)
T ss_pred EEEeeeecCCCceEEEEEeCCc-ccCccccccceeecCCCceEEEE-------EEeccCccccCCCCCCceEEEEE
Confidence 6888886 4 35889999864 2221 0 111223345555443 45553322222 3456998764
|
|
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=1.1 Score=31.31 Aligned_cols=118 Identities=11% Similarity=0.136 Sum_probs=65.3
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcceeeee--cceeee-----cC---CceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIHILTV--GSYTYT-----SD---QRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~~~~~--~~~~~~-----~~---~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|+|...+.. -....|++.++..+... +..... .+ ..+.++ .+.+..+|+|.++..+..|.|+|++
T Consensus 42 V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~s--v~g~~STLTIkk~~i~N~GCYtc~~ 119 (251)
T PHA02982 42 VKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALS--VSGNSSTFTMKKPDPQNLGCFTCEA 119 (251)
T ss_pred EEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEE--EeccceeEEeccCCcccCCceEEEE
Confidence 47999976654 46789998664322211 111111 11 112222 3446678999999999999999999
Q ss_pred cCCC-cee-EEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe
Q psy13371 70 STQP-VRS-FFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE 127 (212)
Q Consensus 70 ~~~~-~~~-~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~ 127 (212)
..+. ..+ ...=|.|+....... .-.-.....+.|-+-+...+. -.|...|-
T Consensus 120 ks~~~k~E~c~kCl~V~~~~V~~~-----W~e~nNeT~V~CyVgS~~~dv--p~W~V~GV 172 (251)
T PHA02982 120 KDAEGKEETCEKCLEIQKEDILYV-----VEEHNNETIITCFVGSKHGDV--PRFIVAGI 172 (251)
T ss_pred ecCCCchheeheeeeEecceEEEE-----EEecCCeEEEEEEEEeccCCC--ccEEEeeE
Confidence 8742 222 122233322221110 112234568889886654453 27877664
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.065 Score=38.39 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=32.6
Q ss_pred EEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 120 IFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 120 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
+.|...+.... .......+++.|. |.+.+...+++|.|+|....
T Consensus 15 y~W~GP~g~~l---~gn~~~nIT~TG~-----L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 15 YLWTGPNGKPL---SGNSYVNITETGK-----LMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred eEEECCCCccc---CCCCeEEEccCce-----EEeeccccccCCceEEEEEE
Confidence 89997654432 2333456666665 99999999999999998864
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.74 Score=26.90 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=16.5
Q ss_pred EEEEcccCCCCCEEEEEEecC
Q psy13371 51 TLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 51 ~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
.+........|+|.+.|.+..
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~ 64 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASD 64 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcC
Confidence 345567788999999999943
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >PHA03052 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.65 Score=25.84 Aligned_cols=40 Identities=23% Similarity=0.506 Sum_probs=29.6
Q ss_pred CCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYD 132 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~ 132 (212)
|....+..|..+++.|.+.-. +...+.+.|..++...+..
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~ 44 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEED 44 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEecc
Confidence 355678889999999999643 3345668999888877544
|
|
| >PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites [] | Back alignment and domain information |
|---|
Probab=92.94 E-value=2.3 Score=29.88 Aligned_cols=106 Identities=18% Similarity=0.212 Sum_probs=47.1
Q ss_pred ceEEEEeeCcceeeee---cceeeecCCceEEEeeCCCCeEEEEE-cccCCCCCEEEEEEecCC-CceeEEEEEEEeccc
Q psy13371 13 TRVSWIRHRDIHILTV---GSYTYTSDQRFSAIHRREGDEWTLHI-KWAQKRDAGVYECQLSTQ-PVRSFFVNLNVVVPT 87 (212)
Q Consensus 13 ~~v~W~~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~L~i-~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~ 87 (212)
-.+.|+.++. .+.+. .......++.++..+ .|.+ .+...+..-..+|++.-. +..+... ++-...|
T Consensus 7 ~~~~Wf~dg~-~v~~~~~~~~~~~~~~G~~s~vS-------tl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r-~~a~~~P 77 (211)
T PF02124_consen 7 VRFRWFEDGN-PVEPRFIRDSSQVWSDGLFSRVS-------TLTLPGNSADSPPPSIRCQVTWYRDSVSETR-FNATATP 77 (211)
T ss_pred EEEEEEECCE-eCCccceeeEEEEecCCcEEEEE-------EEEecCCCCCCCCCcceEEEEEccCCCeeeE-eeccccc
Confidence 4789999884 22211 111222233343332 4556 233333445688987643 2122111 1111222
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~ 129 (212)
..... +...+.- ..-...|.+.=-|.....+.|..++...
T Consensus 78 ~Vy~~-P~vsv~F-~~g~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 78 SVYPK-PRVSVRF-EDGYAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred ceecC-CEEEEEe-cCCEEEEEcceeeCCCeEEEEEECCccC
Confidence 22211 2222211 2235556664444444568999877643
|
EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection. |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.54 Score=32.67 Aligned_cols=75 Identities=13% Similarity=0.367 Sum_probs=43.9
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-EEEeeCCC--------------CceeEEeecCceEEEEEEEeeeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-VISYDSSR--------------GGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-~~~~~~~~--------------~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
++....++.+.|.|...... ......|..+.. .+...... .......-.+ ..|+|+|.++..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~-~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g--~~STLTIkk~~i 109 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDAD-EISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG--NSSTFTMKKPDP 109 (251)
T ss_pred hhhccCCCcEEEEecCCCcc-hhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec--cceeEEeccCCc
Confidence 34456789999999864332 222367876432 22211000 0111111122 236799999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+..|-|+|.+...
T Consensus 110 ~N~GCYtc~~ks~ 122 (251)
T PHA02982 110 QNLGCFTCEAKDA 122 (251)
T ss_pred ccCCceEEEEecC
Confidence 9999999999863
|
|
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.82 Score=28.14 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=18.6
Q ss_pred EEEEeeeeecCCEEEEEEcccC
Q psy13371 151 YLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 151 ~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+|.|+.++..|+|.|...+++.
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~ 93 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNE 93 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEET
T ss_pred eEEEeecCcccCceEEEEEEcC
Confidence 5999999999999999999986
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.51 Score=36.95 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=48.3
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEc---CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHH---DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
...+..+++..++|-+.|.+.+. |.|.+. +..+.+... ..........+..|.|-+....|+|.|+|.+.+
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r~--V~c~qv~anr~~vv~~~n----q~~e~p~vtstcql~ic~ewq~~a~w~tCs~rc 278 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYRV--VTCEQVFANRENVVMRPN----QTVENPVVTSTCQLVICNEWQADAGWYTCSARC 278 (560)
T ss_pred hhhcccchhhcccccccCCcCce--eeeehhhccccceeecCc----cccCCcceeeeeeEEEcchhhcCCCceeecccc
Confidence 34577899999999999887777 899753 333322210 001011111234599999999999999999998
Q ss_pred C
Q psy13371 172 A 172 (212)
Q Consensus 172 ~ 172 (212)
.
T Consensus 279 g 279 (560)
T KOG4597|consen 279 G 279 (560)
T ss_pred c
Confidence 7
|
|
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=7.5 Score=30.45 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=14.5
Q ss_pred EeeeCCC-C--CceEEEEeeCc
Q psy13371 4 QRKLKGL-L--PTRVSWIRHRD 22 (212)
Q Consensus 4 ~C~~~~~-p--~~~v~W~~~~~ 22 (212)
.|.+.++ | .-.+.|++++.
T Consensus 240 tC~va~YYPp~Sv~lrWf~ng~ 261 (466)
T PHA03270 240 TCVAANYYPGDRAAFRWFEGGD 261 (466)
T ss_pred EEEeeeecCCCceEEEEEeCCc
Confidence 6888886 4 35889999884
|
|
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=89.74 E-value=7.5 Score=30.16 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=63.2
Q ss_pred eeEeeeCC---CCCceEEEEeeCcceeeee-cce--------eeecCCceEEEee----CCCCeEEEEEcccCCCCCEEE
Q psy13371 2 LHQRKLKG---LLPTRVSWIRHRDIHILTV-GSY--------TYTSDQRFSAIHR----REGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 2 ~l~C~~~~---~p~~~v~W~~~~~~~~~~~-~~~--------~~~~~~r~~~~~~----~~~~~~~L~i~~~~~~d~G~Y 65 (212)
-|.|.++- ..-....|+..+- .+-+. +.. .+..+..|.++.. ..-...+|+|.++..+.+|.|
T Consensus 283 ~~~c~~s~~~~e~i~~~~w~~t~~-~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I~N~GCY 361 (500)
T PHA02914 283 DIECFFSMCGNENISNAKWIDTGF-EIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHINNAGCY 361 (500)
T ss_pred EEEEEEeecCCcccccceEEecCC-cccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEEEcCCce
Confidence 46788766 2345778986542 11100 000 1112345555532 122356899999999999999
Q ss_pred EEEecCCC-ceeEEEEEEEecccceeeCCCceeeeC-CCcEEEEeEEeeCCCCCceEEEEEcCeEE
Q psy13371 66 ECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDE-GSTINLTCSIKYSPEPPAYIFWYHHDEVI 129 (212)
Q Consensus 66 ~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~-g~~~~l~C~~~~~~~p~~~v~W~~~~~~~ 129 (212)
+|++..+. ...+..=|.|.. .+.. ..-.+ .....+.|-+-.....+..+.|..+|-..
T Consensus 362 ~~~a~~g~~~~ec~~Cl~V~d--~V~f----~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~ 421 (500)
T PHA02914 362 EAQAFMGKFKEECRHCFKVAD--HVFF----KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSF 421 (500)
T ss_pred EEEEecCcchhhhhhheEecc--EEEE----EEEeccCceEEEEEEEEecccCCceeEEEEccEEe
Confidence 99998752 112211122211 0110 11222 33567788775442223247999887544
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=88.34 E-value=3.8 Score=24.49 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=37.1
Q ss_pred CceeeeCCCcEEEEeEEeeCCC---CCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPE---PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~---p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
+...+..|..++..|.....-. ....+.|..++..++ ...+....++. +.+++.+......-.|-|.
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP-----~~qy~~in~~~---SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP-----GSQYRVINDTV---SSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST-----CGCEEEESTTE---EEEEESS--SSEEEEEEEE
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC-----hhHcceeCCeE---EEEEEccCCCCCceEEEEE
Confidence 4456888999999999863322 344689998887541 12222222222 4467666655544566665
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein | Back alignment and domain information |
|---|
Probab=87.82 E-value=7.1 Score=31.06 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=13.5
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCCC--ceeEEEEEEEecccce--------------------eeCCCceeeeCCCcEE
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQP--VRSFFVNLNVVVPTAE--------------------ILGSPDLHVDEGSTIN 105 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~~--------------------~~~~~~~~~~~g~~~~ 105 (212)
+...|.|.+++.+|+|.|+-...+.+ .....+.|.|..+... +.........+|+++.
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~ 166 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFH 166 (439)
T ss_dssp -----------------------------------------------------------SEEEEEE--SEEE--TT--EE
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEE
Confidence 44579999999999999999887643 3344455565432111 0112234556788887
Q ss_pred EEeEEeeCC----CCCceEEEEEc
Q psy13371 106 LTCSIKYSP----EPPAYIFWYHH 125 (212)
Q Consensus 106 l~C~~~~~~----~p~~~v~W~~~ 125 (212)
+.-.+.... +-...+.|+.-
T Consensus 167 ~~v~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 167 LSVHLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp ---EEEEEESSS--EEEEEEEEEE
T ss_pred EeEEEEeccCCCCCeeEEEEEEEe
Confidence 776654321 11345789864
|
gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B. |
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=87.50 E-value=13 Score=29.55 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=31.2
Q ss_pred EeeeCCC-C--CceEEEEeeCcceee-ee---cceeeecCCceEEEeeCCCCeEEEEEcccCC-CCCEEEEEEecC
Q psy13371 4 QRKLKGL-L--PTRVSWIRHRDIHIL-TV---GSYTYTSDQRFSAIHRREGDEWTLHIKWAQK-RDAGVYECQLST 71 (212)
Q Consensus 4 ~C~~~~~-p--~~~v~W~~~~~~~~~-~~---~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~ 71 (212)
.|.+.++ | .-.+.|++++. .+. .. .......++.++..+ .|++.+... +..-..+|.+.-
T Consensus 256 ~C~aa~YYPp~Sv~~rWf~dg~-~V~~~~~~~~~~~~~~~gl~T~vS-------tlt~~~~~~~~~PP~lrC~v~W 323 (486)
T PHA03273 256 VCVVASYFPHSSVKLRWYKNAK-EVDFTKYVTNASSVWVDGLITRIS-------TLSIPVDPDEEYTPSLRCSIEW 323 (486)
T ss_pred EEEeeeecCCCceEEEEEeCCe-eccccccceeeEEEecCCceEEEE-------EEeccCcccCCCCCCceEEEEE
Confidence 6888886 4 35889999884 222 11 111112233333332 455554322 333468998764
|
|
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=86.65 E-value=1.5 Score=34.51 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=40.6
Q ss_pred eEeeeCCCCCceEEEEeeC--c-ceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 3 HQRKLKGLLPTRVSWIRHR--D-IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 3 l~C~~~~~p~~~v~W~~~~--~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|-+.|.+.+.|.|-+.- + ..++. ...++ ++. .......|.|-+....|+|-|+|.+.+.
T Consensus 216 ~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq~~---e~p-----~vtstcql~ic~ewq~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 216 STCGVQGRQYRVVTCEQVFANRENVVMR-PNQTV---ENP-----VVTSTCQLVICNEWQADAGWYTCSARCG 279 (560)
T ss_pred ccccccCCcCceeeeehhhccccceeec-Ccccc---CCc-----ceeeeeeEEEcchhhcCCCceeeccccc
Confidence 5788999999999997522 1 12222 11110 111 1224567999999999999999999885
|
|
| >PHA03189 UL14 tegument protein; Provisional | Back alignment and domain information |
|---|
Probab=85.09 E-value=14 Score=27.63 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=41.7
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCc--eEE---EEEcCeEEEeeCCCC-------------ceeEEeecCceEEEEEEEee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPA--YIF---WYHHDEVISYDSSRG-------------GVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~--~v~---W~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~i~~ 156 (212)
...+..|+.+++.|.......|.+ .+. |.-.+..+..+...+ .+....+-+.....+|++ +
T Consensus 61 P~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF-~ 139 (348)
T PHA03189 61 PLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF-R 139 (348)
T ss_pred ccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE-E
Confidence 345778999999999864434432 222 211222222221111 111112222222334555 6
Q ss_pred eeecCCEEEEEEcccCCe
Q psy13371 157 AELKDSGKYSCSPSNADV 174 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~~~ 174 (212)
+..+.+|.|.|...|..+
T Consensus 140 v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 140 VSTSTAGMYECVLRNETH 157 (348)
T ss_pred EEecccceEEEEeccccc
Confidence 777889999999999833
|
|
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=84.68 E-value=0.36 Score=40.12 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=37.8
Q ss_pred eEee-eCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 3 HQRK-LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 3 l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|. ..+.|.-.++|++++. +..... .+ ....++.+++..++..|.|+|+|++.+-
T Consensus 149 l~cr~pe~~paae~~w~k~e~--~~~pd~-------n~-----~~~~d~~li~~~arlsd~~nytc~a~ni 205 (909)
T KOG1480|consen 149 LPCRPPEGDPKAEVEWLKNEV--VIDPDA-------NV-----IRASDHNLIISQARLSDSGNYTCEATNI 205 (909)
T ss_pred ccccCcccchhhhhhccccCC--CCCccc-------cc-----hhhhcCCccccchhhhhcccceeeeehh
Confidence 4444 4456788999999873 221111 11 1124568899999999999999999873
|
|
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=83.83 E-value=3.6 Score=31.18 Aligned_cols=19 Identities=5% Similarity=0.080 Sum_probs=16.1
Q ss_pred eeEeeeCCC-C-CceEEEEee
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRH 20 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~ 20 (212)
.|+|.+.|. | .-.+.|.|+
T Consensus 218 tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 218 TLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred eEEEEEEeEeCCccEEEEEec
Confidence 589999996 5 568899998
|
|
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=83.76 E-value=6.3 Score=24.09 Aligned_cols=20 Identities=0% Similarity=0.009 Sum_probs=15.6
Q ss_pred eeEeeeCCC-CC--ceEEEEeeC
Q psy13371 2 LHQRKLKGL-LP--TRVSWIRHR 21 (212)
Q Consensus 2 ~l~C~~~~~-p~--~~v~W~~~~ 21 (212)
.++|.+.+. |. ..|.|+|..
T Consensus 19 tv~C~v~~v~P~~~l~v~LlkG~ 41 (99)
T cd07689 19 TVKCEVPDVYPFDRLEIELLKGE 41 (99)
T ss_pred EEEEEecCcccCCceEEEEecCc
Confidence 689999874 54 789999865
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=83.16 E-value=7.1 Score=22.80 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=16.3
Q ss_pred EEEeeeeecCCEEEEEEc-ccC
Q psy13371 152 LLIQQAELKDSGKYSCSP-SNA 172 (212)
Q Consensus 152 l~i~~~~~~d~g~y~C~~-~n~ 172 (212)
.........|+|.+.|.| .+.
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~ 66 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNE 66 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECT
T ss_pred EEEecCCCCCCEEEEEEEcCCc
Confidence 455566779999999999 554
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 212 | ||||
| 2yd6_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 8e-05 | ||
| 3pxh_A | 201 | Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt | 2e-04 | ||
| 2kkq_A | 116 | Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom | 3e-04 | ||
| 2yd9_A | 304 | Crystal Structure Of The N-Terminal Ig1-3 Module Of | 7e-04 | ||
| 2yd5_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 7e-04 |
| >pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212 | Back alignment and structure |
|
| >pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201 | Back alignment and structure |
|
| >pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116 | Back alignment and structure |
|
| >pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304 | Back alignment and structure |
|
| >pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 5e-26
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
++ T + W L D R + E ++ + D G Y
Sbjct: 29 RVDQNDNTSLQWSN-PAQQTLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLSDEGQY 86
Query: 66 ECQLSTQPVRSFFVNLNVVVP 86
C L T PV++ L V+
Sbjct: 87 TCSLFTMPVKTSKAYLTVLGV 107
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-07
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS-- 139
V + + ++ V EG T LTC + + + W + + Y + +
Sbjct: 2 KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDN 59
Query: 140 -VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVAS--VYVHVL 182
+ + + + L D G+Y+CS V + Y+ VL
Sbjct: 60 RIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVL 105
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 97.8 bits (243), Expect = 1e-25
Identities = 32/186 (17%), Positives = 65/186 (34%), Gaps = 13/186 (6%)
Query: 3 HQRKLKGLLPTRVSWIR----HRDIHILTVGSYTYTSDQRFSAIHR--REGDEWTLHIKW 56
+ R++ VSW + + I + + F R + + L +
Sbjct: 14 YWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTA 73
Query: 57 AQKRDAGVYECQLST-QPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPE 115
A G Y C++ + + +L+VV P + S + S + +TC++ P
Sbjct: 74 ANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPH 133
Query: 116 PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA--D 173
P ++ W + V ++ G + + G + S + +C N +
Sbjct: 134 P--HVQWLMPEGVEPAPTAANGGVMKEKDG--SLSVAVDLSLPKPWHLPVTCVGKNDKEE 189
Query: 174 VASVYV 179
VYV
Sbjct: 190 AHGVYV 195
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-05
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 19/102 (18%)
Query: 98 VDEGSTINLTCSIKY-SPEPPAYIFWYH-------------HDEVISYDSSRGGVSVITE 143
G + LT + S P + W+ H +VI + G I
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNAD---VASVYVHVL 182
T +L++ A + G Y C + ++ V+
Sbjct: 63 SA--NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV 102
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 95.6 bits (237), Expect = 2e-25
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 4 QRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG 63
+ ++K + + W L G D R + E ++ I D G
Sbjct: 59 KCQVKDHEDSSLQWSN-PAQQTLYFGEKRALRDNRIQLVTS-TPHELSISISNVALADEG 116
Query: 64 VYECQLSTQPVRSFFVNLNVVVP 86
Y C + T PVR+ + V+
Sbjct: 117 EYTCSIFTMPVRTAKSLVTVLGI 139
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 37.8 bits (87), Expect = 6e-04
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 9/102 (8%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY-----DSSRGGVSV 140
+ D V G T+ L C + + W + + Y + +
Sbjct: 38 QDDSQPWTSDETVVAGGTVVLKCQ--VKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQL 95
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVL 182
+T + I L D G+Y+CS V + V
Sbjct: 96 VTSTP--HELSISISNVALADEGEYTCSIFTMPVRTAKSLVT 135
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 3e-22
Identities = 35/181 (19%), Positives = 57/181 (31%), Gaps = 24/181 (13%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
+SW + + QR S + + D TL I A DAG+Y+C
Sbjct: 29 DAKDKDISWFSPNGEKLSP-------NQQRISVVWN-DDDSSTLTIYNANIDDAGIYKCV 80
Query: 69 LSTQP--VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
++ + VN+ + EG + C + S P I W H
Sbjct: 81 VTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKG 138
Query: 127 EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA-----DVASVYVHV 181
+ V ++ +YL I+ + D G Y C + + V V
Sbjct: 139 RDVI-LKKDVRFIV------LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Query: 182 L 182
Sbjct: 192 N 192
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 9e-16
Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 28/178 (15%)
Query: 14 RVSWIR-HRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-- 70
+ W RD+ + + S+ L I+ +K D G Y C+
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNN-------------YLQIRGIKKTDEGTYRCEGRIL 177
Query: 71 -TQPVRSFFVNLNVVVPTAEILGSP--DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE 127
+ + + V VP + + G ++ L C PEP + W E
Sbjct: 178 ARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP--TMSWTKDGE 235
Query: 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
I + + ++ S L I+ + D +Y C N AS+++ V
Sbjct: 236 PIENEEEDDEKHIFSDDS----SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 8e-09
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-EVISYDSSRGGVSVITEKGEVTTSYL 152
+ G + C + + I W+ + E +S + R + + +S L
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKD-ISWFSPNGEKLSPNQQR----ISVVWNDDDSSTL 64
Query: 153 LIQQAELKDSGKYSCSPSNA--DVASVYVHV 181
I A + D+G Y C + + V+V
Sbjct: 65 TIYNANIDDAGIYKCVVTAEDGTQSEATVNV 95
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 3e-22
Identities = 30/183 (16%), Positives = 51/183 (27%), Gaps = 34/183 (18%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRF------SAIHRREGDEWTLHIKWAQKRDA 62
+ W I IL T S + + L IK + D+
Sbjct: 21 QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 80
Query: 63 GVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFW 122
Y C++ Q + + D H+ +G ++ LT P +
Sbjct: 81 DTYICEVEDQKEEVQLLVFGLTAN-------SDTHLLQGQSLTLTLESPPGSSP--SVQC 131
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN---ADVASVYV 179
I L + Q EL+DSG ++C+ + +
Sbjct: 132 -----------RSPRGKNIQGGKT-----LSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175
Query: 180 HVL 182
VL
Sbjct: 176 VVL 178
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 9e-07
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 14/97 (14%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGG-----------VSVITEKGE 146
+G T+ LTC+ W + +++ + +
Sbjct: 7 GKKGDTVELTCTASQKKSIQ--FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 147 VTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L+I+ +++DS Y C + V + V
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVED-QKEEVQLLVFG 100
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 2e-21
Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 22/181 (12%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+L+G P +VSW + D L S +++ E ++HI D G Y
Sbjct: 407 ELQGTPPFQVSWHK--DKRELR-------SGKKYK--IMSENFLTSIHILNVDSADIGEY 455
Query: 66 ECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH 124
+C+ S + ++ + P + D+ G + L +I+ + + W+
Sbjct: 456 QCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPI--SVAWFK 513
Query: 125 HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
I +S I + L +AE ++GKY+C N + V
Sbjct: 514 DKGEIVRESDN-----IWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Query: 182 L 182
L
Sbjct: 569 L 569
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 1e-17
Identities = 40/183 (21%), Positives = 62/183 (33%), Gaps = 26/183 (14%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+ G P +++W + I G+Y T + TL + K DAG Y
Sbjct: 220 HVTGTAPIKITW-AKDNREIRPGGNYKMTLV----------ENTATLTVLKVTKGDAGQY 268
Query: 66 ECQLS-TQPVRSFFVNLNVVVPTAEILGSP--DLHVDEGSTINLTCSIKYSPEPPAYIFW 122
C S S L V P + V + C I P + W
Sbjct: 269 TCYASNVAGKDSCSAQLGVQEP-PRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLW 325
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYV 179
Y + I +SS+ +S + L + ++DSG Y+C NA +S +
Sbjct: 326 YKDETEIQ-ESSKFRMSFVESVAV-----LEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 379
Query: 180 HVL 182
V
Sbjct: 380 KVK 382
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 6e-16
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 12/143 (8%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGS 102
L + D+G Y C+ S +L V P + +G+
Sbjct: 341 SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGA 400
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162
++L C ++ +P + W+ + I + +T+ + I + D
Sbjct: 401 DVHLECELQGTPPF--QVSWHKDKRELRSGKKY----KIMSENFLTS--IHILNVDSADI 452
Query: 163 GKYSCSPSNA---DVASVYVHVL 182
G+Y C SN D + +
Sbjct: 453 GEYQCKASNDVGSDTCVGSITLK 475
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 8e-16
Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 15/150 (10%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLSTQP---VRSFFVNLNVVVPTAEILGSP-DLHV 98
+ + + +L I D G Y C+ S + + D+H
Sbjct: 54 MQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHE 113
Query: 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158
G + C I S + WY E++ D + S I L I Q +
Sbjct: 114 TLGFPVAFECRINGSEPLQ--VSWYKDGELLK-DDANLQTSFIHNVAT-----LQILQTD 165
Query: 159 LKDSGKYSCSPSNA---DVASVYVHVLNGE 185
G+Y+CS SN +S + + E
Sbjct: 166 QSHVGQYNCSASNPLGTASSSAKLTLSEHE 195
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 6e-15
Identities = 27/145 (18%), Positives = 46/145 (31%), Gaps = 15/145 (10%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLS---TQPVRSFFVNLNVVVPTAEILGSP-DLHVD 99
+ TL I + G Y C S S + L+ P + +
Sbjct: 151 SFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLA 210
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159
G + C + + I W + I G + + T+ L + +
Sbjct: 211 LGESGTFKCHVTGTAPIK--ITWAKDNREI---RPGGNYKMTLVEN---TATLTVLKVTK 262
Query: 160 KDSGKYSCSPSNA---DVASVYVHV 181
D+G+Y+C SN D S + V
Sbjct: 263 GDAGQYTCYASNVAGKDSCSAQLGV 287
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-07
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
+ G I L C + +PE I WY + + + + + L+
Sbjct: 13 EHVEAAIGEPITLQCKVDGTPEIR--IAWYKEHTKLRSAPA------YKMQFKNNVASLV 64
Query: 154 IQQAELKDSGKYSCSPSNA---DVASVYVHV 181
I + + D G+Y+C N+ +S + +
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVI 95
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 1e-20
Identities = 35/176 (19%), Positives = 59/176 (33%), Gaps = 12/176 (6%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS--- 70
RV W + Y S R + ++D G Y C +S
Sbjct: 32 RVEWKFVQGSTT---ALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEG 88
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130
Q ++L V+VP ++ S V G+ LTCS PP+ W+ +
Sbjct: 89 GQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEH-DGSPPSEYSWFKDGISML 147
Query: 131 YDSSRGGVSVITEKGEVT--TSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
++ + + + + L+ DSG+Y C N + S H+
Sbjct: 148 TADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 6e-07
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISYDSSRGGVSVITEKGEVTTS 150
D+ V E +I LTC+ P + W + + ++ ++S
Sbjct: 8 QSDVQVPENESIKLTCTYSGFSSP--RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSS 65
Query: 151 YLLIQQAELKDSGKYSCSPSNA-----DVASVYVHVL 182
+ KD+G+Y+C S S+++ VL
Sbjct: 66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 1e-20
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+ + W+ + + Y + ++ +H ++ ++ + +D GVY
Sbjct: 24 VTSLRKNSSLQWLTPSG-FTIFLNEYPVLKNSKYQLLHH-SANQLSITVPNVTLQDEGVY 81
Query: 66 ECQLSTQPVRSFFVNLNVVV-PTAEILGSP 94
+C + V + V + V+ E P
Sbjct: 82 KCLHYSDSVSTKEVKVIVLATMKGEFCRYP 111
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-06
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS---VITEKGEVTT 149
+ + V+EG T+ L C + W + + +
Sbjct: 8 TETITVEEGQTLTLKCVTSLRKNSS--LQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQ 65
Query: 150 SYLLIQQAELKDSGKYSCSPSNADV--ASVYVHVL 182
+ + L+D G Y C + V V V VL
Sbjct: 66 LSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVL 100
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 2e-20
Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 14/172 (8%)
Query: 15 VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP- 73
++W R D T G + H +LHIK + D+G Y+C+ +++
Sbjct: 32 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS----SLHIKDVKLSDSGRYDCEAASRIG 87
Query: 74 VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS 133
+ L++ I + EG+ IN++C +K PPA I W V+ +
Sbjct: 88 GHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKS--NPPASIHWRRDKLVLPAKN 145
Query: 134 SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ + L I D G+Y+C+ +N + +
Sbjct: 146 TTN----LKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 3e-09
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV-ITEKGEV 147
I+ + E + L C + P P I W + ++ + I KG+
Sbjct: 3 HIIQLKNETTYENGQVTLVCDAEGEPIP--EITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+S L I+ +L DSG+Y C ++ S+Y+ +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 84.2 bits (207), Expect = 5e-20
Identities = 39/212 (18%), Positives = 71/212 (33%), Gaps = 37/212 (17%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQ---------RFSAIHRREGDEWTLHIKWAQK 59
RV W+ +D + Y S+ R + ++ +L ++ QK
Sbjct: 34 EKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQK 93
Query: 60 RDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPA 118
D G+Y C++ + + + V E DL V G T + CSI+ + E
Sbjct: 94 ADEGIYTCEIRLKNESMVMKKPVELWVLPEE---PRDLRVRVGDTTQMRCSIQSTEEKRV 150
Query: 119 Y----------------IFWYHHDEVISYDSS----RGGVSVITEKGEVTTSYLLIQQAE 158
+ Y + S R V + + S + +Q +
Sbjct: 151 TKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGS-IKLQTVK 209
Query: 159 LKDSGKYSCSPSNA---DVASVYVHVLNGEYT 187
D G Y+CS ++ +HV+ E+
Sbjct: 210 ESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQ 241
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 1e-04
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 18/108 (16%)
Query: 93 SPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYH------HDEVISYDSSRGGVSVITEKG 145
SP L V G ++ + C ++ + + + W E + + S V +
Sbjct: 12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQN 71
Query: 146 EVTTSY--------LLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
LL+Q + D G Y+C V V +
Sbjct: 72 RSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 2e-04
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQ-------------RFSAIHRREGDEWTLHIKWAQ 58
T+V+W+ H +Y S+ R ++ ++ ++ +
Sbjct: 150 VTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVK 209
Query: 59 KRDAGVYECQLSTQPVRSF-FVNLNVVVPTAEILGSPDLHVDEGSTINLTCS 109
+ D G+Y C + + S + L+VV + SP D+G L +
Sbjct: 210 ESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQGILNGN 261
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 7e-20
Identities = 40/175 (22%), Positives = 60/175 (34%), Gaps = 11/175 (6%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS--- 70
RV W T Y + S R + K + D G Y C +S
Sbjct: 35 RVEWKF---DQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG 91
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130
V L V+VP ++ + G+ LTCS + PP+ W+ V+
Sbjct: 92 GNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMP 150
Query: 131 YDS-SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ S S + TT L+ D+G+YSC N + S V +
Sbjct: 151 TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 5e-08
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG--EVTTS 150
P++ + E + + L+C+ P + W + + + +
Sbjct: 11 EPEVRIPENNPVKLSCAYSGFSSP--RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT 68
Query: 151 YLLIQQAELKDSGKYSCSPSNA-----DVASVYVHVL 182
+ + +D+G Y+C S V + VL
Sbjct: 69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 4e-19
Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 18/184 (9%)
Query: 13 TRVSWIRHRDIHILTVGSYTY----TSDQRFSAIHRREGDE---WTLHIKWAQKRDAGVY 65
++++W RH + + V T + +R + R G E +L + + D G Y
Sbjct: 35 SQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNY 94
Query: 66 ECQLSTQP--VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY 123
C T P RS + L V+ + + C PPA I W+
Sbjct: 95 TCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGG-RPPAQITWH 153
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA-----DVASVY 178
+ S V TS ++ + D +C + + +V
Sbjct: 154 SDLGGMPNTSQ---VPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210
Query: 179 VHVL 182
+ V
Sbjct: 211 LTVY 214
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 1e-13
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 28/177 (15%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ--- 68
P +++W H D+ + S + + + + D C+
Sbjct: 147 PAQITW--HSDLGGMPNTSQVPGFLSGTVTVTS------LWILVPSSQVDGKNVTCKVEH 198
Query: 69 LSTQPVRSFFVNLNVVVP-TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE 127
S + + VNL V P I G + + LTC + +P P W
Sbjct: 199 ESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNP-EPTGYNWSTTMG 257
Query: 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ + LLI+ + + C+ +NA A + V V
Sbjct: 258 PL------------PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-07
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAY---IFWYHHDEVISY------------DSSRGGV 138
+ G ++ L C ++ + + W H E S +S R
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67
Query: 139 SVITEKGEVTTSYLLIQQAELKDSGKYSCS----PSNADVASVYVHVL 182
E+ + L + ++D G Y+C P + +++ VL
Sbjct: 68 VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 5e-19
Identities = 36/177 (20%), Positives = 56/177 (31%), Gaps = 25/177 (14%)
Query: 15 VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ-LSTQP 73
V W R G ++ I +G L I DA VY+ + +
Sbjct: 36 VKWYRQ--------GKEIIADGLKYR-IQEFKGGYHQLIIASVTDDDATVYQVRATNQGG 86
Query: 74 VRSFFVNLNVVVPT-----AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV 128
S +L V VP + G +H G +++ P+P I W ++
Sbjct: 87 SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDL 144
Query: 129 ISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
I + TS + E KD+G Y N D +V + V
Sbjct: 145 IDNNGHY-----QVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 7e-09
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+L+V S L C + P+P + WY + I D + + KG L+I
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPI--VKWYRQGKEIIADGLK--YRIQEFKGGYHQ--LII 66
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
D+ Y +N + + V
Sbjct: 67 ASVTDDDATVYQVRATNQGGSVSGTASLEV 96
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 5e-19
Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 11/144 (7%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSP-DLHVDEGS 102
R+ I + D+G Y C + V +I G + +EG
Sbjct: 50 RKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAA-PDITGHKRSENKNEGQ 108
Query: 103 TINLTCSIKYSPEPPAYIFWYH-HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK- 160
+ C P P W + V S+ G I K + L I ++
Sbjct: 109 DAMMYCKSVGYPHPE--WMWRKKENGVFEEISNSSGRFFIINKE--NYTELNIVNLQITE 164
Query: 161 DSGKYSCSPSNA---DVASVYVHV 181
D G+Y C+ +N+ S + V
Sbjct: 165 DPGEYECNATNSIGSASVSTVLRV 188
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 5e-09
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 14/96 (14%)
Query: 90 ILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
I+ S + D + L C++ S Y +W + ++
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME-------- 57
Query: 149 TSYLLIQQAELKDSGKYSCSPSNA--DVASVYVHVL 182
I + +DSG+Y C A+ + V
Sbjct: 58 ---YRINKPRAEDSGEYHCVYHFVSAPKANATIEVK 90
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-18
Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 12/142 (8%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGS 102
L + D+G Y C+ S +L V P + +G+
Sbjct: 149 SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGA 208
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162
++L C ++ +P + W+ + + +++E + + I + D
Sbjct: 209 DVHLECELQGTPPF--QVSWHKDKRELR-SGKK--YKIMSENFLTS---IHILNVDSADI 260
Query: 163 GKYSCSPSNA---DVASVYVHV 181
G+Y C SN + +
Sbjct: 261 GEYQCKASNDVGSYTCVGSITL 282
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 9e-17
Identities = 43/182 (23%), Positives = 65/182 (35%), Gaps = 24/182 (13%)
Query: 6 KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65
+ G P +++W + I G+Y T + + TL + K DAG Y
Sbjct: 28 HVTGTAPIKITW-AKDNREIRPGGNYKMTLVENTA----------TLTVLKVTKGDAGQY 76
Query: 66 ECQLS-TQPVRSFFVNLNVVVPTAEILGSPDLH-VDEGSTINLTCSIKYSPEPPAYIFWY 123
C S S L V P I V + C I SPE + WY
Sbjct: 77 TCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI--KVLWY 134
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVH 180
+ I +SS+ +S + L + ++DSG Y+C NA +S +
Sbjct: 135 KDETEIQ-ESSKFRMSFVESVAV-----LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 188
Query: 181 VL 182
V
Sbjct: 189 VK 190
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-08
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ + G + C + + I W + I + +T T L +
Sbjct: 14 SVDLALGESGTFKCHVTGTAPI--KITWAKDNREIRPGGNY----KMTLVENTAT--LTV 65
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ D+G+Y+C SN D S + V
Sbjct: 66 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 2e-18
Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 24/154 (15%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS--TQPVRSFFVNLNVVVPTAEILG 92
+ + + L +K ++ DAG Y CQ+ + S V L V
Sbjct: 45 NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV-PFFTV 103
Query: 93 SP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
P DL V + L+C PEP I W+ I + V
Sbjct: 104 EPKDLAVPPNAPFQLSCEAVGPPEP-VTIVWWRGTTKIGGPAPSPSV------------- 149
Query: 152 LLIQQAELKDSGKYSCSPSN----ADVASVYVHV 181
+ + S +SC N A + VH+
Sbjct: 150 --LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-09
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
+++G+P L V +G + L CS++ EP I W V+ I +
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSVEGMEEP--DIQWVKDGAVVQNLDQLY----IPVSEQH 57
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA------DVASVYVHVL 182
+L ++ E D+G+Y C + + V +
Sbjct: 58 WIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV 98
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 2e-18
Identities = 31/181 (17%), Positives = 54/181 (29%), Gaps = 27/181 (14%)
Query: 11 LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC--Q 68
L VS +R +L Y ++ + I+ A+ D+ Y C
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFFSPWR-------------GFIIRKAKVLDSNTYVCKTM 164
Query: 69 LSTQPVRSFFVNLNVVVPTAEI----LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH 124
++ + S + L V E L L G + CS + +
Sbjct: 165 VNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG--FNVILK 222
Query: 125 HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ K L + + +D+G YSC SN A++ V
Sbjct: 223 RGDTKLEIPLNSDFQDNYYKK---VRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Query: 182 L 182
+
Sbjct: 280 V 280
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 5e-13
Identities = 29/159 (18%), Positives = 47/159 (29%), Gaps = 15/159 (9%)
Query: 29 GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPT 87
GS + E TL + A ++ G Y C P S ++L V P
Sbjct: 30 GSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPA 89
Query: 88 AEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146
++ V EG L C I P + + S
Sbjct: 90 HSWNLLAQEVTVVEGQEAVLPCLIT-DPALKDSVSLMREGGRQVLRKTVYFFS------- 141
Query: 147 VTTSYLLIQQAELKDSGKYSCSPSNADV----ASVYVHV 181
+I++A++ DS Y C +++ V
Sbjct: 142 -PWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKV 179
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 1e-06
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 20/91 (21%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P+L V+ G T+ L C S + W T E S L
Sbjct: 12 PELVVEPGETVTLRCVSNGS------VEWD-----------GPISPYWTLDPESPGSTLT 54
Query: 154 IQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ A K++G Y C+ +++++V
Sbjct: 55 TRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 2e-18
Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 15/155 (9%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTA--EI 90
++ L I K ++G Y + + + L V TA
Sbjct: 47 STSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF 106
Query: 91 LGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
+ + V +GS + L + P P + +Y I S I+++G++ +
Sbjct: 107 VQRLQSMTVRQGSQVRLQVRVTGIPTP--VVKFYRDGAEIQ-SSLD---FQISQEGDLYS 160
Query: 150 SYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
LLI +A +DSG YS + +N+ ++ + V
Sbjct: 161 --LLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 5e-10
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V EGST I P P + W+ +VIS S+ GV + G L I
Sbjct: 14 SVVVLEGSTATFEAHISGFPVP--EVSWFRDGQVIS-TSTLPGVQISFSDGRAK---LTI 67
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+SG+YS +N ++ + V
Sbjct: 68 PAVTKANSGRYSLKATNGSGQATSTAELLV 97
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 2e-18
Identities = 38/178 (21%), Positives = 54/178 (30%), Gaps = 24/178 (13%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS- 70
P V W RD IL + T T L I Q D G Y+C +
Sbjct: 32 PPEVHW--LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFL 89
Query: 71 -TQPVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV 128
Q S + + L P D V + NL+C + PE P + W
Sbjct: 90 GHQTFVSQPGYVGLEGL-PYFLEEPEDRTVAANTPFNLSCQAQGPPE-PVDLLWL----- 142
Query: 129 ISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN----ADVASVYVHVL 182
+ V + T G L + + +SC N + + VL
Sbjct: 143 ------QDAVPLATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITVL 192
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 3e-09
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT---TSY 151
++ G T L C ++ EPP + W +++ S + E + S
Sbjct: 11 NITGARGLTGTLRCQLQVQGEPPE-VHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQ 69
Query: 152 LLIQQAELKDSGKYSCSPSN------ADVASVYVHVL 182
L I +L D+G+Y C + V + L
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL 106
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 2e-18
Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 21/180 (11%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ--L 69
VS + D + I AG+ C+ +
Sbjct: 37 NLNVSLCARYPEKRFVPDGNRISWD-----------SKKGFTIPSYMISYAGMVFCEAKI 85
Query: 70 STQPVRSFFVNLNVV---VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
+ + +S + VV + + S + + G + L C+ + W +
Sbjct: 86 NDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPS 145
Query: 127 EVISYDS--SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ +R + + + S L I D G Y+C+ S+ S +V V
Sbjct: 146 SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 3e-18
Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 24/175 (13%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
+SW + L+ + QR S + + D TL I A DAG+Y+C ++ +
Sbjct: 34 DISWFS-PNGEKLS------PNQQRIS-VVWNDDDSSTLTIYNANIDDAGIYKCVVTAED 85
Query: 74 --VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
VN+ + EG + C + S P I W H +
Sbjct: 86 GTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKGRDV-- 141
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA-----DVASVYVHV 181
+ ++ YL I+ + D G Y C + + V V
Sbjct: 142 ILKKDVRFIVLSNN-----YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 8e-09
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-EVISYDSSRGGVSVITEKGEVTTSYLL 153
+ G + C + + I W+ + E +S + R +SV+ + +T L
Sbjct: 11 QGEISVGESKFFLCQVAGDAKDK-DISWFSPNGEKLSPNQQR--ISVVWNDDDSST--LT 65
Query: 154 IQQAELKDSGKYSCSPSNA----DVASVYVHVL 182
I A + D+G Y C + A+V V +
Sbjct: 66 IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 78.6 bits (193), Expect = 3e-18
Identities = 34/193 (17%), Positives = 68/193 (35%), Gaps = 28/193 (14%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQR--------------FSAIHRREGDEWTLH 53
+ P + W+ + + S + F++ + GD +++
Sbjct: 29 EDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD-ASIN 87
Query: 54 IKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKY 112
+ Q D G Y+C++ P V + L V+V + D + G+ L C K
Sbjct: 88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKE 147
Query: 113 SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
P W + + + E+T+ + ++ A + SG YSC+ N
Sbjct: 148 GS-LPLQFEWQKLSDSQTMPTPW--------LAEMTSPVISVKNASSEYSGTYSCTVQNR 198
Query: 173 ---DVASVYVHVL 182
D + + V+
Sbjct: 199 VGSDQCMLRLDVV 211
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-05
Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 29/125 (23%)
Query: 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEP--PAYIFWYHHDE--------VIS 130
L++ P I +G T L C SPE P I W +I
Sbjct: 1 LSITTPEQRI------EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIIL 54
Query: 131 YDS----------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASV 177
Y +G V + + + + + +L D G Y C A
Sbjct: 55 YSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKF 114
Query: 178 YVHVL 182
+ VL
Sbjct: 115 LLTVL 119
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 4e-18
Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 18/160 (11%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQ-LSTQPVRSFFVNLNVVVPTAEILG 92
S+QRF I +G L I+ + RD +YEC + S L V+ G
Sbjct: 48 SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG 107
Query: 93 SP-------DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
P V+ T + C+ +P+P I W+ + ++ G + + +
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDTSNNNGRIKQLRSES 165
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSN----ADVASVYVHV 181
L I+Q+E D GKY C +N A ++V
Sbjct: 166 IGA---LQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-06
Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 11/92 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D G + C P P I W + +S + E + + S L I
Sbjct: 15 DQTGVSGGVASFICQATGDPRP--KIVWNKKGKKVSNQRFE-----VIEFDDGSGSVLRI 67
Query: 155 QQAELK-DSGKYSCSPSNA---DVASVYVHVL 182
Q D Y C SN S + VL
Sbjct: 68 QPLRTPRDEAIYECVASNNVGEISVSTRLTVL 99
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 5e-18
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 17/163 (10%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQPVRSFFVNLNVVVPTAE--- 89
+ R R W+L ++ D G Y C + + +L+VV +
Sbjct: 61 KQEHRIGGYKVRNQH-WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 119
Query: 90 -ILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
G P + G + C + +P +I W H E G+ +
Sbjct: 120 LQAGLPANASTVVGGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 148 T-----TSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
L + D+G+Y C SN S ++ VL
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 4e-09
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V +T+ C +P P + W + + + GG V + L++
Sbjct: 28 LHAVPAANTVKFRCPAGGNPMP--TMRWLKNGKEFKQEHRIGGYKVRNQHWS-----LIM 80
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ D G Y+C N + ++ V+
Sbjct: 81 ESVVPSDKGNYTCVVENEYGSINHTYHLDVV 111
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 6e-18
Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 27/183 (14%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
+L VS +R R ++ +Y+++ I A+ + Y+C
Sbjct: 116 PVLEAGVSLVRVRGRPLMRHTNYSFSPWH-------------GFTIHRAKFIQSQDYQCS 162
Query: 69 --LSTQPVRSFFVNLNVVVPTAE----ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFW 122
+ + V S + L V L +L G + CS +
Sbjct: 163 ALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNF--DVF 220
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYV 179
H+ + + L + Q + + +G YSC SN S++
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQ---KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFF 277
Query: 180 HVL 182
V+
Sbjct: 278 RVV 280
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 7e-14
Identities = 27/145 (18%), Positives = 41/145 (28%), Gaps = 15/145 (10%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGSP-DLHVDEG 101
+G L A ++ G Y C P S ++L V P ++ V E
Sbjct: 45 YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFED 104
Query: 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKD 161
L C + P A + + S G I +A+
Sbjct: 105 QDALLPCLLT-DPVLEAGVSLVRVRGRPLMRHTN--YSFSPWHG------FTIHRAKFIQ 155
Query: 162 SGKYSCSPSNADV----ASVYVHVL 182
S Y CS S+ + V
Sbjct: 156 SQDYQCSALMGGRKVMSISIRLKVQ 180
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-05
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 20/92 (21%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
P+L V G+T+ L C S + W T + ++S L
Sbjct: 11 VPELVVKPGATVTLRCVGNGS------VEWDGPPSPH-----------WTLYSDGSSSIL 53
Query: 153 LIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
A +++G Y C+ A+++++V
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 7e-18
Identities = 33/163 (20%), Positives = 52/163 (31%), Gaps = 28/163 (17%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC-------QLSTQPVRSFFVNLNVVVP 86
+D I +G L I DA VY+ +S +L V VP
Sbjct: 46 IADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT------ASLEVEVP 99
Query: 87 TA----EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
+ L +H G +++ P+P I W ++I ++
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDLID-NNGH----YQ 152
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
TS + E KD+G Y N D +V + V
Sbjct: 153 VIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-08
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+L+V S L C + P+P + WY + I D + + KG L+I
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKP--IVKWYRQGKEIIADGLK--YRIQEFKGGYHQ--LII 66
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
D+ Y +N + + V
Sbjct: 67 ASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 9e-18
Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 21/135 (15%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
+ A D+G Y CQ + Q S V+L V+ +L +P L EG TI L C
Sbjct: 52 PSYRFKANNNDSGEYTCQ-TGQTSLSDPVHLTVLFE-WLVLQTPHLEFQEGETIMLRCHS 109
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170
P + ++ + + + I QA SG Y C+ +
Sbjct: 110 WKDK-PLVKVTFFQNGKSQKFSHL--------------DPTFSIPQANHSHSGDYHCTGN 154
Query: 171 NADV----ASVYVHV 181
V + V
Sbjct: 155 IGYTLFSSKPVTITV 169
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-09
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 86 PTAEI-LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144
P A + L P ++V + ++ LTC SPE + W+H+ +I
Sbjct: 3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQ-WFHNGNLIP-------------- 47
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSNADV-ASVYVHVL 182
T +A DSG+Y+C + V++ VL
Sbjct: 48 --THTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL 84
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 1e-17
Identities = 26/134 (19%), Positives = 41/134 (30%), Gaps = 20/134 (14%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
+ I A D+G Y CQ RS + L + +L EG + L C
Sbjct: 49 SYRITSASVNDSGEYRCQRGLSG-RSDPIQLEIHRGWL-LLQVSSRVFTEGEPLALRCHA 106
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170
+ +Y + + + S L I + + +G Y CS
Sbjct: 107 WKDK-LVYNVLYYRNGKAFKFFHW--------------NSNLTILKTNISHNGTYHCSGM 151
Query: 171 NA---DVASVYVHV 181
A + V V
Sbjct: 152 GKHRYTSAGISVTV 165
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 6e-14
Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 20/141 (14%)
Query: 51 TLHIKWAQKRDAGVYECQ-LSTQPVRSFFVNLNVVVP--TAEILGSPDLHVDEGSTINLT 107
L I G Y C + S +++ V + S + EG+ + L+
Sbjct: 132 NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLS 191
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
C K + P + + G ++ +G T+S I A +DSG Y C
Sbjct: 192 CETKLLLQRPGLQLY--------FSFYMGSKTL---RGRNTSSEYQILTARREDSGLYWC 240
Query: 168 SPSNA------DVASVYVHVL 182
+ + + VL
Sbjct: 241 EAATEDGNVLKRSPELELQVL 261
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 3e-08
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 18/99 (18%)
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
L P + V + T+ L C + + P + W+ + +
Sbjct: 5 TLQPPWVSVFQEETVTLHCEVLHLPGSSSTQ-WFLNGTATQTSTPS-------------- 49
Query: 150 SYLLIQQAELKDSGKYSCSPSNADV-ASVYVHVLNGEYT 187
I A + DSG+Y C + + + + G
Sbjct: 50 --YRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLL 86
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 78.6 bits (193), Expect = 3e-17
Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 22/181 (12%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL-- 69
R+ + + R S ++ I AG+ C+
Sbjct: 157 LNVSLCARYPEKRFVP-------DGNRISWDSKK-----GFTIPSYMISYAGMVFCEAKI 204
Query: 70 ---STQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
S Q + V + + + S + + G + L C+ + W +
Sbjct: 205 NDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPS 264
Query: 127 EVISYDS--SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ +R + + + S L I D G Y+C+ S+ S +V V
Sbjct: 265 SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 324
Query: 182 L 182
Sbjct: 325 H 325
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 3e-16
Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 27/191 (14%)
Query: 8 KGLLPTRVSWIR---------HRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ 58
++W + ++ + + D + +K A
Sbjct: 574 DRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNAS 633
Query: 59 KRDAGVYECQLS---TQPVRSFFVNLNVVVPTA-EILGSP-DLHVDEGSTINLTCSIKYS 113
+D G Y C T+ L V+ A I G+ + G +I ++C+ +
Sbjct: 634 LQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGN 693
Query: 114 PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA- 172
P P I W+ +E + DS V+ + L I++ +D G Y+C +
Sbjct: 694 PPP--QIMWFKDNETLVEDSGI----VLKD----GNRNLTIRRVRKEDEGLYTCQACSVL 743
Query: 173 --DVASVYVHV 181
+ +
Sbjct: 744 GCAKVEAFFII 754
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 6e-14
Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 21/149 (14%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCS 109
+ + +Y+C+ + ++ +V EI PD+ E +++L C+
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRG-PEITLQPDMQPTEQESVSLWCT 572
Query: 110 IKYSPEPPAYIFWYHHDEVI--------------SYDSSRGGVSVITEKGEVTTSYLLIQ 155
S + WY + D+ + + + ++
Sbjct: 573 ADRSTFE--NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELK 630
Query: 156 QAELKDSGKYSCSPSNA---DVASVYVHV 181
A L+D G Y C + V +
Sbjct: 631 NASLQDQGDYVCLAQDRKTKKRHCVVRQL 659
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 8e-14
Identities = 37/167 (22%), Positives = 52/167 (31%), Gaps = 37/167 (22%)
Query: 51 TLHIKWAQKRDAGVYECQLS---TQPVRSFFVNLNVVVP---TAEILGSPDLHVDEGSTI 104
L I +RD G Y L+ ++ +S V+L V VP + L SP G+T
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 441
Query: 105 NLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV----------------- 147
LTC++ P PP +I WY E + VSV
Sbjct: 442 TLTCTVYAIP-PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN 500
Query: 148 ----------TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ + S Y C N + HV
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV 547
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 2e-12
Identities = 25/182 (13%), Positives = 51/182 (28%), Gaps = 21/182 (11%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
+ L + + D + + + TL I + D G+Y C
Sbjct: 249 RTELNVGIDFNWEYP-SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTC 307
Query: 68 QLSTQP-VRSFFVNLNVVVP---TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY 123
S+ + + V + G + + P P I WY
Sbjct: 308 AASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP--EIKWY 365
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVH 180
+ + + + L I + +D+G Y+ +N + S V
Sbjct: 366 KNGIPLESNHTI-----------KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414
Query: 181 VL 182
++
Sbjct: 415 LV 416
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 7e-12
Identities = 28/172 (16%), Positives = 46/172 (26%), Gaps = 37/172 (21%)
Query: 15 VSWIRHRDIHILTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS--- 70
+ W+ + T SD F TL I D G Y+C
Sbjct: 59 LDWLWPNNQSGSEQRVEVTECSDGLFCK---------TLTIPKVIGNDTGAYKCFYRETD 109
Query: 71 TQPVRSFFVNLNV---VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH-- 125
V +V + ++ G + ++ T+ + C S + Y
Sbjct: 110 LASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKR 169
Query: 126 ----DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173
IS+DS +G I + +G C D
Sbjct: 170 FVPDGNRISWDSKKG---------------FTIPSYMISYAGMVFCEAKIND 206
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 6e-11
Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 14/131 (10%)
Query: 54 IKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTCSIKY 112
++ ++ C + T+ ++++ +P + L + +T+ +TC
Sbjct: 1 MQSKVLLAVALWLC-VETRAASVGLPSVSLDLPR--LSIQKDILTIKANTTLQITCR--- 54
Query: 113 SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
+ W ++ V V + L I + D+G Y C
Sbjct: 55 -GQRDLDWLWPNNQSGSEQR-----VEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRET 108
Query: 173 D-VASVYVHVL 182
D + +YV+V
Sbjct: 109 DLASVIYVYVQ 119
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 3e-17
Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 34/182 (18%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYT------SDQRFSAIHRREGDEWTLHIKWAQKRDA 62
+ W I IL T +D+ S + + L IK + D+
Sbjct: 20 QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 79
Query: 63 GVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFW 122
Y C++ Q + + D H+ +G ++ LT P +
Sbjct: 80 DTYICEVEDQKEEVQLLVFGLTAN-------SDTHLLQGQSLTLTLES--PPGSSPSVQC 130
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN---ADVASVYV 179
L + Q EL+DSG ++C+ + +
Sbjct: 131 RSPRGKNIQGGKT----------------LSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174
Query: 180 HV 181
V
Sbjct: 175 VV 176
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 7e-08
Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 22/165 (13%)
Query: 48 DEWTLHIKWAQKRDAGVYECQLS-TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINL 106
TL + + +D+G + C + Q F +++ V+ S ++ EG +
Sbjct: 140 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA---SSIVYKKEGEQVEF 196
Query: 107 TCSIKYSPE---PPAYIFWY-----HHDEVISYDSSRGGVSV-------ITEKGEVTTSY 151
+ + ++ E ++W I++D VSV + G+ +
Sbjct: 197 SFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLH 256
Query: 152 LLIQQAELK--DSGKYSCSPSNAD-VASVYVHVLNGEYTGWSESL 193
L + QA + SG + + V+++ T ++L
Sbjct: 257 LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNL 301
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 9e-08
Identities = 20/135 (14%), Positives = 36/135 (26%), Gaps = 33/135 (24%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVR-SFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCS 109
TL Q +G L + + VNL V+ T NLTC
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT-------------QLQKNLTCE 304
Query: 110 IKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169
+ P + ++ + ++G + C
Sbjct: 305 VWGPTSPKLMLSLKLENKEAK-----------------VSKREKAVWVLNPEAGMWQCLL 347
Query: 170 SNAD--VASVYVHVL 182
S++ + + VL
Sbjct: 348 SDSGQVLLESNIKVL 362
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 2e-06
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRG----GVSVITEKGEVTTSY-- 151
+G T+ LTC+ W + +++ + G S + ++ + S
Sbjct: 6 GKKGDTVELTCTASQKKSIQ--FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 152 -----LLIQQAELKDSGKYSCSPSNADVASVYVHVLN 183
L+I+ +++DS Y C + V + V
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVED-QKEEVQLLVFG 99
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-17
Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 30/162 (18%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC-------QLSTQPVRSFFVNLNVVVP 86
+++ +G TL + ++ D GVY C ++ T L +
Sbjct: 49 IQSRKYKMSS--DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETS------SKLLLQAT 100
Query: 87 ---TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+ GST+ L P P + W+H +++ +S +++
Sbjct: 101 PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP--AMTWFHGQKLLQ-NSEN--ITIENT 155
Query: 144 KGEVTTSYLLIQQAELK-DSGKYSCSPSNA---DVASVYVHV 181
+ L+++ + K +GKY SN A + V +
Sbjct: 156 EHYTH---LVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D+ G L+C I P P I WY + + ++ G T L +
Sbjct: 16 DVTTKLGEAAQLSCQIVGRPLP--DIKWYRFGKELIQSRKY----KMSSDGRTHT--LTV 67
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
E +D G Y+C +N S + +
Sbjct: 68 MTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 4e-17
Identities = 28/188 (14%), Positives = 58/188 (30%), Gaps = 22/188 (11%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR-------EGDEWTLHIKWAQKRDAGV 64
T+V+W + + V Y + A +R + T+ + + D GV
Sbjct: 47 ITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGV 106
Query: 65 YECQLSTQPV--RSFFVNLNVVVPTAEILGSPDLHV-----DEGSTINLTCSIKYSPEPP 117
Y C+ +T P R +NL V+ + + + + TC+ PP
Sbjct: 107 YICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGK-PP 165
Query: 118 AYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DV 174
+ + W + + S + + +C +
Sbjct: 166 SVVSWETRLKGEAEYQEIRN----PNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221
Query: 175 ASVYVHVL 182
S+ ++V
Sbjct: 222 ESLTLNVQ 229
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 65.2 bits (158), Expect = 7e-13
Identities = 25/179 (13%), Positives = 47/179 (26%), Gaps = 26/179 (14%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
G P+ VSW + + + I + +++ C
Sbjct: 162 GKPPSVVSW--ETRLKGEAEYQEIRNPNGTVTVIS-------RYRLVPSREAHQQSLACI 212
Query: 69 LS-TQPVRSFFVNLNV-VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
++ + LNV P I G + + LTC +P P W +
Sbjct: 213 VNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANP-PATEYHWTTLN 271
Query: 127 EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ ++ +G Y C +N V V++
Sbjct: 272 GSLPKGVEAQNRTL-----------FFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 1e-06
Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 14/110 (12%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPP--AYIFWYHHDE-----VISYDSSRGGV 138
P+ + + ++ G+ + L CS + W V Y+ S G
Sbjct: 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVS 73
Query: 139 SVITEKGEVT-------TSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181
+ + V + + + EL+D G Y C + + +
Sbjct: 74 VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQL 123
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 6e-17
Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQPVRSFFVNLNVVVPTAE--- 89
+ R I R W+L ++ D G Y C + L+V+ +
Sbjct: 57 RGEHRIGGIKLRHQQ-WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI 115
Query: 90 -ILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
G P + GS + C + +P +I W H EV G +T
Sbjct: 116 LQAGLPANQTAVLGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKVGPDGTPYVTVLKSW 173
Query: 148 TT------SYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ L + +D G+Y C +N + ++ V
Sbjct: 174 ISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH 217
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 6e-09
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
L V +T+ C +P P I W + + GG+ + ++ L++
Sbjct: 24 LLAVPAANTVRFRCPAAGNPTP--SISWLKNGREFRGEHRIGGIKLRHQQWS-----LVM 76
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ D G Y+C N + + VL
Sbjct: 77 ESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 107
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 6e-17
Identities = 34/176 (19%), Positives = 53/176 (30%), Gaps = 20/176 (11%)
Query: 11 LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
LP + W I T + R + L I+ + AG + C
Sbjct: 648 LPLNIDWTLD-GQAISEDLGITTSRVGRRGS---------VLTIEAVEASHAGNFTCHAR 697
Query: 71 TQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
+ F LNV VP IL D +GS + C P+P + W
Sbjct: 698 NLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQ--VTWKKAVGDT 755
Query: 130 SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN----ADVASVYVHV 181
+ ++ V L + + + G Y C N A + + V
Sbjct: 756 PGEYKD---LKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 2e-16
Identities = 33/175 (18%), Positives = 52/175 (29%), Gaps = 24/175 (13%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQ 72
+SW I Y + L+I D G+Y+C
Sbjct: 460 EISWELD-GKKIANNDRYQVGQY-----VTVNGDVVSYLNITSVHANDGGLYKCIAKSKV 513
Query: 73 PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYD 132
V LNV I + G T+ +TC + P I W + + +
Sbjct: 514 GVAEHSAKLNVYGLPY-IRQMEKKAIVAGETLIVTCPVAGYPID--SIVWERDNRALPIN 570
Query: 133 SSRGGVSVITEKGEVTTSYLLIQQAELK-DSGKYSCSPSNA----DVASVYVHVL 182
+ + G L+I+ E D Y+C N S+ V V+
Sbjct: 571 RKQ----KVFPNGT-----LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 3e-16
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 10/139 (7%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQ---PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINL 106
L I+ +K D G+Y+C + S + L I + + ++ G ++ L
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449
Query: 107 TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166
C +P P I W + I+ + +T G+V SYL I D G Y
Sbjct: 450 KCVAGGNPTPE--ISWELDGKKIANNDRYQVGQYVTVNGDVV-SYLNITSVHANDGGLYK 506
Query: 167 CSPSNA---DVASVYVHVL 182
C + S ++V
Sbjct: 507 CIAKSKVGVAEHSAKLNVY 525
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 4e-16
Identities = 37/172 (21%), Positives = 55/172 (31%), Gaps = 31/172 (18%)
Query: 15 VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQP 73
W + I T +D R + TL IK A D+G Y C ++ +
Sbjct: 280 FRWYK--FIEGTTRKQAVVLND-------RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG 330
Query: 74 VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS 133
S L V P + + P VD G TC +P + W + I +
Sbjct: 331 GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK--TVSWMKDGKAIGHSE 388
Query: 134 SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
S L I+ + +D G Y C N AS + +
Sbjct: 389 ----------------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLG 424
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 2e-15
Identities = 31/138 (22%), Positives = 46/138 (33%), Gaps = 13/138 (9%)
Query: 51 TLHIKWAQKR-DAGVYECQLSTQPVRSFFVNLNVVV---PTAEILGSPDLHVDEGSTINL 106
TL I+ ++ D Y C Q S +L V V P + G + L
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639
Query: 107 TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166
CS+ P I W + IS D V S L I+ E +G ++
Sbjct: 640 HCSVPGGD-LPLNIDWTLDGQAISEDLGITTSRVGRR-----GSVLTIEAVEASHAGNFT 693
Query: 167 CSPSNA---DVASVYVHV 181
C N + ++V
Sbjct: 694 CHARNLAGHQQFTTPLNV 711
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 6e-13
Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 31/189 (16%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDA-GVYEC 67
VSW + + D ++ LHI+ D Y+C
Sbjct: 167 ADFVEVVSWHTDEEENYFP----GAEYDGKYLV-----LPSGELHIREVGPEDGYKSYQC 217
Query: 68 Q----LSTQPVRSFFVNLNVVV--------PTAEILGSPDLHVDEGSTINLTCSIKYSPE 115
+ L+ + S V+ + ST+ L C + P
Sbjct: 218 RTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPV 277
Query: 116 PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA--- 172
P WY E +R V+ ++ + + L+I+ A ++DSGKY C +N+
Sbjct: 278 P--VFRWYKFIEGT----TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 331
Query: 173 DVASVYVHV 181
+ + V
Sbjct: 332 ESVETVLTV 340
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 1e-10
Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 43 HRREGDEWTLHIK------WAQKRDAGVYECQLSTQP--VRSFFVNLNVVVPTAEILGSP 94
R+ + L + Q+ A VY C Q + S V++ VV
Sbjct: 87 LRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVN 146
Query: 95 DLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSR-GGVSVITEKGEVTTSYL 152
HV G++ + C I + + + W+ +E + + G ++ GE L
Sbjct: 147 KEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE-----L 201
Query: 153 LIQQAELKDS-GKYSCSPSN 171
I++ +D Y C +
Sbjct: 202 HIREVGPEDGYKSYQCRTKH 221
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 6e-09
Identities = 15/126 (11%), Positives = 40/126 (31%), Gaps = 9/126 (7%)
Query: 52 LHIKWAQKRDAGVYECQ----LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLT 107
+++ + + ++ +Q + + + + P + + + +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYS 166
C +P P I W D D G+ I+ G++ + + + Y+
Sbjct: 61 CKASGNPMP--EIIWIRSDGTAVGDVP--GLRQISSDGKLVFPPFRAEDYRQEVHAQVYA 116
Query: 167 CSPSNA 172
C N
Sbjct: 117 CLARNQ 122
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 8e-17
Identities = 34/174 (19%), Positives = 57/174 (32%), Gaps = 34/174 (19%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ-------------LSTQPVRSFFVN 80
R G++ L I D G Y + LS Q +
Sbjct: 150 RYSDRVKTGV--TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 207
Query: 81 LNVVVPTAEILGSP---------DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
+ A + + + EG +NLTC++ +PP + W +++ +
Sbjct: 208 FQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKAL-- 263
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+S ++ E G T+Y I DSGKY N + + V V
Sbjct: 264 -ASDDHCNLKFEAGR--TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 5e-13
Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 32/172 (18%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
T + W + + I + D++ H + TL I K+DAG+YE L
Sbjct: 36 ETHIVWYKD-EREI--------SVDEK----HDFKDGICTLLITEFSKKDAGIYEVILKD 82
Query: 72 QP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCS----------IKYSPEPPAYI 120
+ L ++ + + + + Y + +
Sbjct: 83 DRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLK--V 140
Query: 121 FWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
W H+ I S R V ++ L I + D GKY +
Sbjct: 141 NWSHNGSAIR-YSDR--VKTGVTGEQIW---LQINEPTPNDKGKYVMELFDG 186
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 5e-09
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 13/104 (12%)
Query: 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV 140
++ + V + L C + +I WY + IS D
Sbjct: 2 IDPFTG-PHFVEYLSWEVTGECNVLLKCKVANIK-KETHIVWYKDEREISVDE-----KH 54
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ G T LLI + KD+G Y + D + + +
Sbjct: 55 DFKDGICT---LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 95
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 8e-17
Identities = 30/135 (22%), Positives = 43/135 (31%), Gaps = 15/135 (11%)
Query: 51 TLHIKWAQKRDAGVYECQ-LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCS 109
L I D+G Y C S L V+VP + +L+ E I C+
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECA 335
Query: 110 IKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169
+ P P + W + +V+ S I L I D G Y C
Sbjct: 336 VSGKPVPT--VNWMKNGDVVI-PSDY---FQIVGGSN-----LRILGVVKSDEGFYQCVA 384
Query: 170 SNA---DVASVYVHV 181
N +S + V
Sbjct: 385 ENEAGNAQSSAQLIV 399
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 3e-16
Identities = 31/143 (21%), Positives = 45/143 (31%), Gaps = 21/143 (14%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPTAE------ILGSPDLHVDEGS 102
L I Q D+GVY C + ++ + ++ EG
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162
L C + P P W +EVI S + + LLI DS
Sbjct: 238 DAVLECCVSGYPPP--SFTWLRGEEVIQLRSKK---YSLLGGSN-----LLISNVTDDDS 287
Query: 163 GKYSCSPSNA---DVASVYVHVL 182
G Y+C + AS + VL
Sbjct: 288 GTYTCVVTYKNENISASAELTVL 310
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 1e-12
Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQP---VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLT 107
+ K D G+Y+C+ S + S + V P + + + G T+ L
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
C + P P I W + + ++ V V+ G L I + + DSG Y C
Sbjct: 143 CEVIGDPMP--TIHWQKNQQDLNPIPGDSRV-VVLPSGA-----LQISRLQPGDSGVYRC 194
Query: 168 SPSNA----DVASVYVHVL 182
S N V +L
Sbjct: 195 SARNPASTRTGNEAEVRIL 213
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 3/87 (3%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
D G + L CS + P W ++ G + +L
Sbjct: 29 SDAVTMRGGNVLLNCSAESDRGVPVIK-WKKDGLIL--ALGMDDRKQQLPNGSLLIQNIL 85
Query: 154 IQQAELKDSGKYSCSPSNADVASVYVH 180
+ D G Y C S D S+
Sbjct: 86 HSRHHKPDEGLYQCEASLGDSGSIISR 112
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 9e-17
Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 17/121 (14%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
+ I A D+G Y CQ + S V L V + +L +P E I+L C
Sbjct: 55 SYFIDAATVDDSGEYRCQ-TQLSTLSDPVQLEVHIG-WLLLQAPRWVFKEEDPIHLRCHS 112
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170
+ + + + + Y S I +A LKDSG Y C
Sbjct: 113 WKNT-ALHKVTYLQNGKGRKYFHH--------------NSDFYIPKATLKDSGSYFCRGL 157
Query: 171 N 171
Sbjct: 158 V 158
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 8e-07
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 18/96 (18%)
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
L V E ++ L C YSPE + W+H++ +IS +S
Sbjct: 11 FLEPQWYRVLEKDSVTLKCQGAYSPEDQST-QWFHNESLISSQASS-------------- 55
Query: 150 SYLLIQQAELKDSGKYSCSPSNADV-ASVYVHVLNG 184
I A + DSG+Y C + + V + V G
Sbjct: 56 --YFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIG 89
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 9e-17
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 15/178 (8%)
Query: 11 LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
+W R + Y F+ + TL I A+ D+GV+ C +
Sbjct: 240 SSVYSTWKR-ENSQTKLQEKYNSWHHGDFNYERQA-----TLTISSARVNDSGVFMCYAN 293
Query: 71 -TQPVRSFFVNLNVVVP---TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126
T + L VV + + + V++G ++L + P P + W + +
Sbjct: 294 NTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP-KPEHQQWIYMN 352
Query: 127 EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV---ASVYVHV 181
+ D E S L + + + + G Y+ SN+DV + V+V
Sbjct: 353 RTFT-DKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 1e-13
Identities = 24/180 (13%), Positives = 43/180 (23%), Gaps = 23/180 (12%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ--L 69
T S + + + + C
Sbjct: 143 VTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAY------------HRLCLHCSVDQ 190
Query: 70 STQPVRSFFVNLNVVVPTAE----ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
+ V S L V + + EG +TC+IK Y W
Sbjct: 191 EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSV-YSTWKRE 249
Query: 126 DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ + + + L I A + DSG + C +N + + V+
Sbjct: 250 NSQTK-LQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 3e-13
Identities = 33/180 (18%), Positives = 46/180 (25%), Gaps = 24/180 (13%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS- 70
P WI T Y + S I LH+ + + G Y +S
Sbjct: 343 PEHQQWIY--MNRTFTDKWEDYPKSENESNIRYVS----ELHLTRLKGTEGGTYTFLVSN 396
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130
+ + N+ V EIL D L C PEP I WY
Sbjct: 397 SDVNAAIAFNVYVNTK-PEIL-----TYDRLVNGMLQCVAAGFPEPT--IDWYFCPGTEQ 448
Query: 131 YDSSRG------GVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
S+ ++ I + K +G C N A
Sbjct: 449 RCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF 508
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 2e-10
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 25/127 (19%)
Query: 60 RDAGVYECQL-----STQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSP 114
R A + C L V+ P + G DL V G I L C
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLC------ 58
Query: 115 EPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174
P ++ W + ++ + + ++AE ++GKY+C+ +
Sbjct: 59 TDPGFVKWTFEILDETNENKQN--------------EWITEKAEATNTGKYTCTNKHGLS 104
Query: 175 ASVYVHV 181
S+YV V
Sbjct: 105 NSIYVFV 111
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 3e-08
Identities = 18/147 (12%), Positives = 38/147 (25%), Gaps = 17/147 (11%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGS 102
E + + A+ + G Y C S + + V P L L+ E +
Sbjct: 73 ETNENKQNEWITEKAEATNTGKYTCTNKHGLSNS--IYVFVRDPAKLFLVDRSLYGKEDN 130
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK-D 161
+ C + +P + + + + K ++I+ +
Sbjct: 131 DTLVRCPL---TDPEVTNYSLKGCQGKP--LPKDLRFIPDPKA-----GIMIKSVKRAYH 180
Query: 162 SGKYSCSPSNADV----ASVYVHVLNG 184
CS + V
Sbjct: 181 RLCLHCSVDQEGKSVLSEKFILKVRPA 207
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-16
Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 25/158 (15%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS--TQPVRSFFVNLNVVVPTAEIL 91
D R+ + L I + D G+Y C + L V + +I
Sbjct: 50 LFDTRY----SIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKP-KIT 104
Query: 92 GSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTS 150
P ++ + EG L C+ +P+P + W D + ++SR + E G
Sbjct: 105 RPPINVKIIEGLKAVLPCTTMGNPKPS--VSWIKGDSALR-ENSR---IAVLESGS---- 154
Query: 151 YLLIQQAELKDSGKYSCSPSN------ADVASVYVHVL 182
L I + +D+G+Y C N + + + V V
Sbjct: 155 -LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-07
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ C+++ P+P I W + +I +R + L I
Sbjct: 16 TVDALVEEVATFMCAVESYPQP--EISWTRNKILIKLFDTRYSI-------RENGQLLTI 66
Query: 155 QQAELKDSGKYSCSPSNA 172
E D G Y C+ +N
Sbjct: 67 LSVEDSDDGIYCCTANNG 84
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 1e-16
Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 38/177 (21%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
T W + + ++D R TL + + D G YEC +
Sbjct: 317 NTTYLWWV-NNQSLPVSPRLQLSNDNR------------TLTLLSVTRNDVGPYECGIQN 363
Query: 72 Q--PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV 128
+ S V LNV+ + SP + G ++L+C + PPA W +
Sbjct: 364 ELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHA--ASNPPAQYSWLIDGNI 421
Query: 129 ISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ L I K+SG Y+C +N+ + +
Sbjct: 422 QQHTQE-----------------LFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 2e-16
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 25/137 (18%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVV-PTAEILGSPDLHVDEGSTINLT 107
TL + + DA Y C + RS V L+V+ P I+ PD G+ +NL+
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLS 580
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
C +P P W + + L I + ++G Y+C
Sbjct: 581 CHSASNPSP--QYSWRINGIPQQHTQV-----------------LFIAKITPNNNGTYAC 621
Query: 168 SPSNA---DVASVYVHV 181
SN S+ +
Sbjct: 622 FVSNLATGRNNSIVKSI 638
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 9e-14
Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 19/140 (13%)
Query: 51 TLHIKWAQKRDAGVYECQLS----TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINL 106
+L I+ + D G Y + + + +P I + V++ +
Sbjct: 72 SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAF 131
Query: 107 TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166
TC + A W+ +++ + + L + D+ Y
Sbjct: 132 TCEPE---TQDATYLWWVNNQSLPVSPRL--------QLSNGNRTLTLFNVTRNDTASYK 180
Query: 167 CSPSN----ADVASVYVHVL 182
C N SV ++VL
Sbjct: 181 CETQNPVSARRSDSVILNVL 200
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 1e-13
Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 22/124 (17%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLT 107
TL + + D Y+C+ RS V LNV+ SP + G +NL+
Sbjct: 165 TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLS 224
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
C +P W+ + +T L I + +SG Y+C
Sbjct: 225 CHAASNPPAQ--YSWFVNGTFQQ-----------------STQELFIPNITVNNSGSYTC 265
Query: 168 SPSN 171
N
Sbjct: 266 QAHN 269
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 1e-12
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 20/146 (13%)
Query: 51 TLHIKWAQKRDAGVYECQ---LSTQPVRSFFVNLNVVVPTAEILGSP--DLHVDEGSTIN 105
L I ++G Y CQ T R+ + V + + V++ +
Sbjct: 249 ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVA 308
Query: 106 LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165
LTC + W+ +++ + + L + D G Y
Sbjct: 309 LTCEPEIQNTT---YLWWVNNQSLPVSPRL--------QLSNDNRTLTLLSVTRNDVGPY 357
Query: 166 SCSPSN----ADVASVYVHVLNGEYT 187
C N V ++VL G
Sbjct: 358 ECGIQNELSVDHSDPVILNVLYGPDD 383
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 2e-12
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 20/141 (14%)
Query: 51 TLHIKWAQKRDAGVYECQLS---TQPVRSFFVNLNVV--VPTAEILGSPDLHVDEGSTIN 105
L I ++++G+Y CQ + + R+ + V +P I + V++ +
Sbjct: 427 ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVA 486
Query: 106 LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165
TC + W+ + + + + L + D+ Y
Sbjct: 487 FTCEPEAQNTT---YLWWVNGQSLPVSPRLQLSN--------GNRTLTLFNVTRNDARAY 535
Query: 166 SCSPSN----ADVASVYVHVL 182
C N V + VL
Sbjct: 536 VCGIQNSVSANRSDPVTLDVL 556
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-06
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWY------HHDEVISYDSSRGGVSVITEKGE 146
S +V EG + L P+ WY + ++I Y +
Sbjct: 6 STPFNVAEGKEVLLLVHN--LPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSG 63
Query: 147 VTTSY----LLIQQAELKDSGKYSCSPSNADVASVYVHV 181
Y LLIQ D+G Y+ +D+ +
Sbjct: 64 REIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATG 102
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 1e-16
Identities = 33/174 (18%), Positives = 55/174 (31%), Gaps = 34/174 (19%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC-------------QLSTQPVRSFFVN 80
R G++ L I D G Y LS Q +
Sbjct: 45 RYSDRVKTGV--TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 102
Query: 81 LNVVVPTAEILGSP---------DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
+ A + + + EG +NLTC++ P P + W +++ ++
Sbjct: 103 FQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP--EVSWLKNEKALA- 159
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ ++ E G T+Y I DSGKY N + + V V
Sbjct: 160 QTDH--CNLKFEAGR--TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-07
Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 7/83 (8%)
Query: 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
+ + I L + Y E + W H+ I Y GE
Sbjct: 6 LSATDLKIQSTAEGIQLYSFVTYYVEDLK-VNWSHNGSAIRYSDRV----KTGVTGEQIW 60
Query: 150 SYLLIQQAELKDSGKYSCSPSNA 172
L I + D GKY +
Sbjct: 61 --LQINEPTPNDKGKYVMELFDG 81
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 2e-16
Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 23/174 (13%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
P + W + + S QR ++EG L I A DAG+Y CQ +
Sbjct: 32 PESIDW-YNPQGEKII-------STQRVVV--QKEGVRSRLTIYNANIEDAGIYRCQATD 81
Query: 72 Q--PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV 128
+ V L + +G + C + SP P + W +H+E
Sbjct: 82 AKGQTQEATVVLEIYQK-LTFREVVSPQEFKQGEDAEVVCRVSSSPAP--AVSWLYHNEE 138
Query: 129 ISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVL 182
++ S + L I D G Y C + +
Sbjct: 139 VTTISD--NRFAMLANNN-----LQILNINKSDEGIYRCEGRVEARGEIDFRDI 185
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-14
Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 18/140 (12%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVN--LNVVVPTAEILGSP---DLHVDEGSTIN 105
L I K D G+Y C+ + + +V I + + G +
Sbjct: 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 213
Query: 106 LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165
+C SPEP I W+ + ++I ++ + + E L ++ D G Y
Sbjct: 214 FSCRASGSPEP--AISWFRNGKLIE-ENEK--YILKGSNTE-----LTVRNIINSDGGPY 263
Query: 166 SCSPSNA---DVASVYVHVL 182
C +N D ++ V
Sbjct: 264 VCRATNKAGEDEKQAFLQVF 283
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-08
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
++ S + + G + TC+ PE I WY+ + R V+ ++G
Sbjct: 6 QVTISLSKVELSVGESKFFTCTAIGEPES---IDWYNPQGEKIISTQR---VVVQKEGVR 59
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA 172
+ L I A ++D+G Y C ++A
Sbjct: 60 SR--LTIYNANIEDAGIYRCQATDA 82
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 3e-16
Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 17/122 (13%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
+ I A D+G Y CQ + S V L V + +L +P E I+L C
Sbjct: 55 SYFIDAATVNDSGEYRCQ-TNLSTLSDPVQLEVHIG-WLLLQAPRWVFKEEDPIHLRCHS 112
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170
+ + + + + Y S I +A LKDSG Y C
Sbjct: 113 WKNT-ALHKVTYLQNGKDRKYFHH--------------NSDFHIPKATLKDSGSYFCRGL 157
Query: 171 NA 172
Sbjct: 158 VG 159
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 8e-07
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 85 VPTAEI-LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+P A + L V E ++ L C YSPE + W+H++ +IS
Sbjct: 5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNST-QWFHNESLIS------------- 50
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNADV-ASVYVHVLNG 184
S I A + DSG+Y C + + + V + V G
Sbjct: 51 ---SQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIG 89
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 75.8 bits (185), Expect = 3e-16
Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 16/185 (8%)
Query: 12 PTRVSWIRHR-------DIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGV 64
+ W + + + G + R S + +T+ + RDAG
Sbjct: 361 KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGF 420
Query: 65 YECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI--KYSPEPPAYIFW 122
Y C + + V + ++ + ++ G T+ + C K+S + W
Sbjct: 421 YWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKW 480
Query: 123 YHHDE--VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA----DVAS 176
+ + S D V ++ S L + D G Y C + A+
Sbjct: 481 NNTGCQALPSQDEGPSKAFVNCDENSRLVS-LTLNLVTRADEGWYWCGVKQGHFYGETAA 539
Query: 177 VYVHV 181
VYV V
Sbjct: 540 VYVAV 544
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 66.2 bits (160), Expect = 5e-13
Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 20/208 (9%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73
R S + D+ + T+G + R + + +++ I +K DAG Y C +
Sbjct: 254 RQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDG 313
Query: 74 VRSFFVNL-----NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV 128
+ V + + GS++ + C Y+ + I ++ E
Sbjct: 314 QLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLC--PYNRKESKSIKYWCLWEG 371
Query: 129 ISYDSSRGGVSV-------------ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVA 175
V + E+ T +++ Q +D+G Y C + +
Sbjct: 372 AQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431
Query: 176 SVYVHVLNGEYTGWSESLGTQTKYLTFT 203
V + E + G T L T
Sbjct: 432 RTTVEIKIIEGEPNLKVPGNVTAVLGET 459
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 63.5 bits (153), Expect = 4e-12
Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 18/201 (8%)
Query: 12 PTRVSWIRHR-----DIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66
TR W R I + G + R + + E + ++I + D+G Y+
Sbjct: 32 HTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYK 91
Query: 67 CQLSTQPVR-SFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH- 124
C L SF V+L V + + VD G T+ + C K +
Sbjct: 92 CGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQI 151
Query: 125 --------HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---D 173
+ G + + + ++I Q L D+G+Y C + +
Sbjct: 152 GLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN 211
Query: 174 VASVYVHVLNGEYTGWSESLG 194
+ + VL E E L
Sbjct: 212 KKNADLQVLKPEPELVYEDLR 232
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 3e-06
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 1/99 (1%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
W + + + S + F +L + + D G Y C +
Sbjct: 472 SYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSR-LVSLTLNLVTRADEGWYWCGVKQ 530
Query: 72 QPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
+ V V + GS D+ + + +
Sbjct: 531 GHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVL 569
|
| >1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 5e-16
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR-------EGDEWTLHIKWAQKRDAGVYE 66
V W ++ + V Y ++F ++H + + D WTL + Q +D G+Y+
Sbjct: 30 VVFWQDQENLVLNEV----YLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQ 85
Query: 67 CQLSTQPVRSFFVNLNVVV 85
C + + +
Sbjct: 86 CIIHHKKPTGMIRIHQMNS 104
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 6e-16
Identities = 24/181 (13%), Positives = 45/181 (24%), Gaps = 23/181 (12%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ--L 69
++ S I + T ++ + C
Sbjct: 120 VSQYSLIECDGKSLPTDLTFVPNPKAGI------------TIKNVKRAYHRLCVRCAAQR 167
Query: 70 STQPVRSFFVNLNVVVPTAEI----LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125
+ S L V I + + +G T + C+IK W
Sbjct: 168 DGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIK-DVSTSVNSMWLKM 226
Query: 126 DEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ + + S L I A + DSG + C +N + + V
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Query: 182 L 182
+
Sbjct: 287 V 287
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 9e-09
Identities = 18/141 (12%), Positives = 30/141 (21%), Gaps = 13/141 (9%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGST 103
E + + A+ G Y C S S + + V P L L E S
Sbjct: 51 MVENKKNEWIQEKAEATRTGTYTCSNSNGLTSS--IYVFVRDPAKLFLVGLPLFGKEDSD 108
Query: 104 INLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSG 163
+ C + D + G +
Sbjct: 109 ALVRCPLTDPQVS--QYSLIECDGKSLPTDLT--FVPNPKAG-----ITIKNVKRAYHRL 159
Query: 164 KYSCSPSNAD--VASVYVHVL 182
C+ + S +
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLK 180
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 3e-07
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 19/89 (21%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
+L V+ G T++LTC + W ++
Sbjct: 19 QSELIVEAGDTLSLTCIDPDF------VRWTFKTYFNEMVENKKNE-------------W 59
Query: 153 LIQQAELKDSGKYSCSPSNADVASVYVHV 181
+ ++AE +G Y+CS SN +S+YV V
Sbjct: 60 IQEKAEATRTGTYTCSNSNGLTSSIYVFV 88
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 6e-16
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 21/136 (15%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
+L+I A+ D+G Y+CQ Q S V L V +L + V EG + L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQ-HQQVNESEPVYLEVF-SDWLLLQASAEVVMEGQPLFLRCHG 109
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170
+ + +Y E + Y + I A ++DSG Y C+
Sbjct: 110 WRNW-DVYKVIYYKDGEALKYWYE--------------NHNISITNATVEDSGTYYCTGK 154
Query: 171 NADV----ASVYVHVL 182
+ + + V+
Sbjct: 155 VWQLDYESEPLNITVI 170
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-07
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 19/101 (18%)
Query: 84 VVPTAEI-LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT 142
V ++ L P + +G + LTC+ + W+H+ + +S
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFF-EVSSTKWFHNGSLSEETNSS------- 52
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCSPSNADV-ASVYVHVL 182
L I A+ +DSG+Y C + VY+ V
Sbjct: 53 ---------LNIVNAKFEDSGEYKCQHQQVNESEPVYLEVF 84
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 7e-16
Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 32/174 (18%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ-LSTQ 72
+ W R D + + + S+ L I Q+ DAG YEC +++
Sbjct: 236 TILWRR-ADGKPIARKARRHKSNG-------------ILEIPNFQQEDAGSYECVAENSR 281
Query: 73 PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
L + D+HV ++ C P+P W + + +
Sbjct: 282 GKNVAKGQLTFYAQ-PNWVQIINDIHVAMEESVFWECKANGRPKP--TYRWLKNGDPLL- 337
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
++ ++ L I L D+G Y C N +S + V+
Sbjct: 338 ---------TRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 3e-13
Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 26/147 (17%)
Query: 51 TLHIKWAQKRDAGVYECQ----LSTQPVRSFFVNLNVVV--------PTAEILGSPDLHV 98
L+I +K D G Y C ++ V L + P E+ +
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA 217
Query: 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158
++G+T+ L C +P P I W D +R + L I +
Sbjct: 218 EKGTTVKLECFALGNPVP--TILWRRADGKPIARKARR---------HKSNGILEIPNFQ 266
Query: 159 LKDSGKYSCSPSNA---DVASVYVHVL 182
+D+G Y C N+ +VA +
Sbjct: 267 QEDAGSYECVAENSRGKNVAKGQLTFY 293
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 4e-13
Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 13/126 (10%)
Query: 51 TLHI-KWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINL 106
+L I + +DAG Y+C + + S L + + V G + L
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
Query: 107 TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166
C W ++ D+ R V E G L I + E D G Y+
Sbjct: 123 LCGPPPHS-GELSYAWIFNEYPSYQDNRR---FVSQETGN-----LYIAKVEKSDVGNYT 173
Query: 167 CSPSNA 172
C +N
Sbjct: 174 CVVTNT 179
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 8e-16
Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 19/165 (11%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVV-----PT 87
+ R I R W+L ++ D G Y C + + L+V+ P
Sbjct: 165 RGEHRIGGIKLRHQQ-WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI 223
Query: 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT----- 142
+ + GS + C + +P +I W H EV G +T
Sbjct: 224 LQAGLPANQTAVLGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKVGPDGTPYVTVLKTA 281
Query: 143 --EKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ L + +D+G+Y+C N+ S ++ VL
Sbjct: 282 GANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 5e-13
Identities = 27/176 (15%), Positives = 49/176 (27%), Gaps = 36/176 (20%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTA------- 88
R L + A D+G Y C+ ++ V +
Sbjct: 47 GTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDG 106
Query: 89 -------------------EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
E + L V +T+ C +P P I W +
Sbjct: 107 EDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP--SISWLKNGREF 164
Query: 130 SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ GG+ + ++ L+++ D G Y+C N + + VL
Sbjct: 165 RGEHRIGGIKLRHQQWS-----LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-07
Identities = 19/98 (19%), Positives = 25/98 (25%), Gaps = 11/98 (11%)
Query: 85 VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144
VP E L G + L+C P W +
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGG-GPMGPTVWVKDGTGLVPSERV--------- 56
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVL 182
V L + A +DSG YSC + V
Sbjct: 57 -LVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVR 93
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 1e-15
Identities = 16/125 (12%), Positives = 38/125 (30%), Gaps = 1/125 (0%)
Query: 58 QKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPP 117
+ C + R + + P L + G + + C +
Sbjct: 199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGF 258
Query: 118 AYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASV 177
+ W ++ + + + T + + + + D+G Y+CS S S
Sbjct: 259 G-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA 317
Query: 178 YVHVL 182
V ++
Sbjct: 318 LVTIV 322
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 2e-14
Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 24/175 (13%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
++W + L G+Y S + R + + D G Y C S
Sbjct: 257 GFGLTWEL--ENKALEEGNYFEMSTYSTNRTMIRIL---FAFVSSVARNDTGYYTCSSSK 311
Query: 72 QPVRSFFVNLNVVVPT--AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
P +S + +V S D +D+ + K P+ W +
Sbjct: 312 HPSQS--ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI--RCTWTFSRKSF 367
Query: 130 SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD---VASVYVHV 181
+KG + G+Y N D +++
Sbjct: 368 P----------CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 7e-12
Identities = 19/158 (12%), Positives = 40/158 (25%), Gaps = 19/158 (12%)
Query: 33 YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEIL 91
S + F + + +++ K G Y + LN+ ++
Sbjct: 361 TFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK-PQV- 418
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV---- 147
+ E S +C P P W + + V K
Sbjct: 419 ------LAEASASQASCFSDGYPLPS--WTWKKCSDKSPNCTEEITEGVWNRKANRKVFG 470
Query: 148 -TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
S + +E C N+ ++ ++
Sbjct: 471 QWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNS 508
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 5e-10
Identities = 11/131 (8%), Positives = 31/131 (23%), Gaps = 15/131 (11%)
Query: 54 IKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYS 113
+ + Y ++ L + + + VD ++I L +
Sbjct: 19 NNDSSVGKSSSYPMV--SESPEDLGCALRPQSSGT-VYEAAAVEVDVSASITLQVLVDAP 75
Query: 114 PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN-- 171
W ++ + ++I + +G+Y +
Sbjct: 76 GNIS--CLWVFKHSSLNCQPH-------FDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126
Query: 172 -ADVASVYVHV 181
V +
Sbjct: 127 TNYTILFTVSI 137
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 3e-07
Identities = 20/139 (14%), Positives = 35/139 (25%), Gaps = 17/139 (12%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEILGS 93
F +R ++ I + AG Y + ++ + +++ L
Sbjct: 91 CQPHFDLQNRGVV---SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR 147
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P E L C + PEP + W D V E+ +
Sbjct: 148 PYFRKMENQDA-LVCISESVPEPI--VEWVLCDSQGESCKEESPAVVKKEEKVLHEL--- 201
Query: 154 IQQAELKDSGKYSCSPSNA 172
C N
Sbjct: 202 -------FGTDIRCCARNE 213
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 2e-15
Identities = 28/170 (16%), Positives = 46/170 (27%), Gaps = 31/170 (18%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR-SFFVNLNVVVPTA---- 88
++ R + ++ Q D G Y QL V L V
Sbjct: 150 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKE 209
Query: 89 --------------EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS 134
+ V + L C + +I WY + IS
Sbjct: 210 AEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK-KETHIVWYKDEREIS-VDE 267
Query: 135 RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ + G T LLI + KD+G Y + D + + +
Sbjct: 268 K----HDFKDGICT---LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 5e-13
Identities = 16/152 (10%), Positives = 43/152 (28%), Gaps = 20/152 (13%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ-------------LSTQPVRSFFVN 80
R +G++ + K D G+Y C + R ++
Sbjct: 44 EDSPRL--EVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALS 101
Query: 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV 140
PT + + + E + + A + + +++ I
Sbjct: 102 HEHKFPTVPVKSELAVEILEKGQVRFWMQAEKL-SGNAKVNYIFNEKEIFEGPKY----K 156
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
+ + +++ + +D G Y+ +
Sbjct: 157 MHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG 188
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 8e-08
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
++ D ++N C P + W DS R + KG + +
Sbjct: 10 VVNVDDDGVISLNFECDKM---TPKSEFSWSKDYVSTE-DSPR---LEVESKG--NKTKM 60
Query: 153 LIQQAELKDSGKYSCSPSNAD 173
+ + D G YSC ++ D
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTD 81
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 2e-15
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 51 TLHIKWAQKRDAGVYECQL--STQPVRSFFVNLNVVVPTA--EILGSP-DLHVDEGSTIN 105
L I+ +++ D G YEC S S NL V V P + G +N
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVN 224
Query: 106 LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165
+TC SP P Y+ W E + T + ++ +++ ++KDS Y
Sbjct: 225 ITCVAVGSPMP--YVKWMQGAEDL------------TPEDDMPVGRNVLELTDVKDSANY 270
Query: 166 SCSPSNA---DVASVYVHV 181
+C ++ A + V
Sbjct: 271 TCVAMSSLGVIEAVAQITV 289
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-14
Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 35/169 (20%)
Query: 35 SDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYEC-------QLSTQPVRSFFVNLNVVVP 86
+ QRF I E L I+ + RD VYEC +++ L V+
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVH------AKLTVLRE 101
Query: 87 TAEILGSP-------DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139
G P V+ T + C+ +P+P I W+ + +S G +
Sbjct: 102 DQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSASNGRIK 159
Query: 140 VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA------DVASVYVHVL 182
+ + L I+ +E D GKY C +N+ A++YV V
Sbjct: 160 Q------LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ 202
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 7e-06
Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D G + C P+P + W + ++ E E + L I
Sbjct: 15 DQIGVSGGVASFVCQATGDPKP--RVTWNKKGKKVNSQRFE-----TIEFDESAGAVLRI 67
Query: 155 QQAELK-DSGKYSCSPSNA---DVASVYVHVL 182
Q D Y C N+ + VL
Sbjct: 68 QPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 3e-15
Identities = 33/161 (20%), Positives = 52/161 (32%), Gaps = 24/161 (14%)
Query: 35 SDQRFSAIHRREGDEWTLHI-----KWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPT 87
+D+ HR +L + D GVY C S +L V +
Sbjct: 52 TDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILR 111
Query: 88 AEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146
+ +P D+ V G + C P I W + R + G+
Sbjct: 112 DDFRQNPSDVMVAVGEPAVMECQPPRG-HPEPTISWKKDGSPLDDKDER----ITIRGGK 166
Query: 147 VTTSYLLIQQAELKDSGKYSCSPSN------ADVASVYVHV 181
L+I D+GKY C +N ++VA + V
Sbjct: 167 -----LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE 202
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-06
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS-VITEKGEVTTSYLL 153
DL V +G L C + P P I WY E + D ++ G + ++
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTP--TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIV 75
Query: 154 IQQAELKDSGKYSCSPSN----ADVASVYVHV 181
+ D G Y C N A + V
Sbjct: 76 HGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 4e-15
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 7/135 (5%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI 110
K G Y C +P+ + N+ + P H++EG T L C
Sbjct: 50 KTEFKVDSDDQWGEYSCVFLPEPMGT--ANIQLHGPPRVKAVKSSEHINEGETAMLVCKS 107
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK-DSGKYSCSP 169
+ P P WY + G S S L I+ ++ D G+Y C+
Sbjct: 108 ESVP-PVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNG 166
Query: 170 SNA---DVASVYVHV 181
+++ D A + + V
Sbjct: 167 TSSKGSDQAIITLRV 181
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-09
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 13/84 (15%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
D GS I LTCS+ S W V+ D+ G +
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------------QKTEFKVD 56
Query: 158 ELKDSGKYSCSPSNADVASVYVHV 181
G+YSC + + + +
Sbjct: 57 SDDQWGEYSCVFLPEPMGTANIQL 80
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 4e-15
Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 40/160 (25%)
Query: 46 EGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVP--------------TAE 89
G+ L +DAG Y C+++ S + L+V +
Sbjct: 61 NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQ 120
Query: 90 ILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
I P + GST+ L C SP P + W+ ++ +++++ +
Sbjct: 121 ICVEPTSQKLMPGSTLVLQCVAVGSPIP--HYQWFKNELPLTHETKK------------- 165
Query: 149 TSYLLIQQAELKDSGKYSCSPSN------ADVASVYVHVL 182
++ +L+ G Y C N + + + L
Sbjct: 166 --LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 8e-08
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 23/131 (17%)
Query: 79 VNLNVVVPTA-EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRG 136
+ + +VP +I +P V G + L C P W+ ++ I
Sbjct: 9 HHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFV--QYQWFKMNKEIPNG---- 62
Query: 137 GVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN----ADVASVYVHVLNGEYTGWSES 192
TS L+ +KD+G Y C +N + V + +
Sbjct: 63 -----------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSV 111
Query: 193 LGTQTKYLTFT 203
G L
Sbjct: 112 DGVSESKLQIC 122
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 5e-15
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 15/137 (10%)
Query: 51 TLHIKWAQKRDAGVYECQ-LSTQPVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTC 108
L I + D+G Y C + +++ V L P +L + G L C
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA-PYWLDEPKNLILAPGEDGRLVC 334
Query: 109 SIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+P+P + W + E + EV ++ + ++ Y C+
Sbjct: 335 RANGNPKPT--VQWMVNGEPLQSAPPNPNR-------EVAGDTIIFRDTQISSRAVYQCN 385
Query: 169 PSN---ADVASVYVHVL 182
SN +A+ +V VL
Sbjct: 386 TSNEHGYLLANAFVSVL 402
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 1e-11
Identities = 38/193 (19%), Positives = 55/193 (28%), Gaps = 42/193 (21%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDA-GVYE 66
GL + W+ I T D+R S H G L+ +D Y
Sbjct: 142 PGLPSPVIFWMSSSMEPI--------TQDKRVSQGH--NG---DLYFSNVMLQDMQTDYS 188
Query: 67 C----QLSTQPVRSFFVNLNVVVPTAEILGSP----------DLHVDEGSTINLTCSIKY 112
C + + L V+ +P V G + L C
Sbjct: 189 CNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASG 248
Query: 113 SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
P P I WY + D ++ L I +DSG+Y C SN
Sbjct: 249 VPTP--DIAWYKKGGDLPSDKAK-----FENFN----KALRITNVSEEDSGEYFCLASNK 297
Query: 173 ---DVASVYVHVL 182
++ V V
Sbjct: 298 MGSIRHTISVRVK 310
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 6e-09
Identities = 24/120 (20%), Positives = 36/120 (30%), Gaps = 13/120 (10%)
Query: 57 AQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPTAEILGSPD-LHVDEGSTINLTCSIKYS 113
+ G Y+C + S + L V + D + V EG+ + L C+
Sbjct: 84 RPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPG 143
Query: 114 PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS-GKYSCSPSNA 172
P IFW R G+ L L+D YSC+
Sbjct: 144 -LPSPVIFWMSSSMEPITQDKR---VSQGHNGD-----LYFSNVMLQDMQTDYSCNARFH 194
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-05
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 79 VNLNVVVPTAEILGSP--DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRG 136
+ + P I D VD I + C K +P P W + + +
Sbjct: 9 IQNELTQP-PTITKQSAKDHIVDPRDNILIECEAKGNPAP--SFHWTRNSRFFN-IAKDP 64
Query: 137 GVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
VS+ G + + G+Y C N
Sbjct: 65 RVSMRRRSGTL-VIDFRSGGRPEEYEGEYQCFARN 98
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 9e-15
Identities = 22/162 (13%), Positives = 44/162 (27%), Gaps = 26/162 (16%)
Query: 12 PTRVSWIRHRDIHILT--VGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69
R++W+ + IL + F + L I K D G Y ++
Sbjct: 29 YQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRM 88
Query: 70 STQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
+ + + + V + P ++ E S LTC + + + Y E +
Sbjct: 89 LHETEDQWKITMEVYEM----VSKPMIYW-ECSNATLTCEVLEGTDV--ELKLYQGKEHL 141
Query: 130 SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+ + + C N
Sbjct: 142 R-----------------SLRQKTMSYQWTNLRAPFKCKAVN 166
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-05
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 10/99 (10%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE---KGEVTT 149
P+++ GS + LT + W H + G + E K V
Sbjct: 6 VPNVNAITGSNVTLTILKH-PLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64
Query: 150 SY----LLIQQAELKDSGKYSCSPSNADV--ASVYVHVL 182
L I +D G Y + + + V
Sbjct: 65 DKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVY 103
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 1e-14
Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 18/140 (12%)
Query: 51 TLHIKWAQKRDAGVYECQ---LSTQPVRSFFVNLNVVVPTA--EILGSPDLHVDEGSTIN 105
L I K D G+Y C+ + + + + V VP A S + + G +
Sbjct: 58 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 117
Query: 106 LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165
+C SPEP I W+ + ++I + E L ++ D G Y
Sbjct: 118 FSCRASGSPEP--AISWFRNGKLIE---ENEKYILKGSNTE-----LTVRNIINSDGGPY 167
Query: 166 SCSPSNA---DVASVYVHVL 182
C +N D ++ V
Sbjct: 168 VCRATNKAGEDEKQAFLQVF 187
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-06
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 9/77 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+G + C + SP P + W +H+E ++ S + L I
Sbjct: 11 PQEFKQGEDAEVVCRVSSSPAP--AVSWLYHNEEVTTISD--NRFAMLANNN-----LQI 61
Query: 155 QQAELKDSGKYSCSPSN 171
D G Y C
Sbjct: 62 LNINKSDEGIYRCEGRV 78
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-14
Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 28/164 (17%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQK-RDAGVYECQLSTQ--PVRSFFVNLNVVVPTAEI 90
+ R++ + + G L I+ + RD YEC S L +
Sbjct: 49 GTQSRYTVLEQ-PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 107
Query: 91 LGSP-------DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
G P ++ G T+ +TC +P P I+W + + + R +
Sbjct: 108 AGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTP--NIYWIKNQTKVDMSNPR----YSLK 161
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSN------ADVASVYVHV 181
G L I+ + +D GKY C N + ++YV V
Sbjct: 162 DGF-----LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-06
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V G + C+ + P P I W + + +S SR +V+ + G ++ L I
Sbjct: 15 NQGVRVGGVASFYCAARGDPPP--SIVWRKNGKKVSGTQSR--YTVLEQPGGISI--LRI 68
Query: 155 QQAELK-DSGKYSCSPSN----ADVASVYVHVL 182
+ D Y C N A A + +
Sbjct: 69 EPVRAGRDDAPYECVAENGVGDAVSADATLTIY 101
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 2e-14
Identities = 36/172 (20%), Positives = 53/172 (30%), Gaps = 31/172 (18%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ-LSTQ 72
W + + T Q R + TL IK A D+G Y C ++
Sbjct: 243 SFRWYKFIE---------GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 293
Query: 73 PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYD 132
S L V P + + P VD G TC +P + W + I +
Sbjct: 294 GGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT--VSWMKDGKAIGHS 351
Query: 133 SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
S L I+ + +D G Y C N AS + +
Sbjct: 352 ESV----------------LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 3e-14
Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 30/189 (15%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDA-GVYEC 67
VSW + + D ++ + G LHI+ D Y+C
Sbjct: 132 ADFVEVVSWHTDEEENYFPGA----EYDGKYLVLP--SG---ELHIREVGPEDGYKSYQC 182
Query: 68 Q----LSTQPVRSFFVNLNVV-------VPTAEILGSPDLHVDEGSTINLTCSIKYSPEP 116
+ L+ + S V+ P L L + TI+L C + P P
Sbjct: 183 RTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP 242
Query: 117 PAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---D 173
WY E ++R V+ ++ + + L+I+ A ++DSGKY C +N+ +
Sbjct: 243 --SFRWYKFIE----GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE 296
Query: 174 VASVYVHVL 182
+ V
Sbjct: 297 SVETVLTVT 305
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 3e-11
Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 26/174 (14%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIK------WAQKRD 61
G + WIR + V S +G L + Q+
Sbjct: 29 SGNPMPEIIWIRSDGTAVGDVPGLRQISS---------DG---KLVFPPFRAEDYRQEVH 76
Query: 62 AGVYECQLSTQ--PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI-KYSPEPPA 118
A VY C Q + S V++ VV HV G++ + C I + +
Sbjct: 77 AQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE 136
Query: 119 YIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS-GKYSCSPSN 171
+ W+ +E + + + + + L I++ +D Y C +
Sbjct: 137 VVSWHTDEEENYFPGAEYDGKYLV----LPSGELHIREVGPEDGYKSYQCRTKH 186
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 4e-04
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSY 151
+ + + + C +P P I W D D G+ I+ G++ +
Sbjct: 11 TNRIDFSNSTGAEIECKASGNPMP--EIIWIRSDGTAVGDVP--GLRQISSDGKLVFPPF 66
Query: 152 LLIQQAELKDSGKYSCSPSNA--DVASVYVHV 181
+ + Y+C N + S VHV
Sbjct: 67 RAEDYRQEVHAQVYACLARNQFGSIISRDVHV 98
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-14
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 51 TLHIKWAQKRDAGVYECQ-LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCS 109
LHI+ D G YEC+ + + ++ + + + D D GS + +C
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCV 317
Query: 110 IKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169
P P + W + ++ + EV+ L + L+DSG Y C
Sbjct: 318 ASGKPRP--AVRWLRDGQPLASQNRI----------EVSGGELRFSKLVLEDSGMYQCVA 365
Query: 170 SNA---DVASVYVHVL 182
N AS + V
Sbjct: 366 ENKHGTVYASAELTVQ 381
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 9e-13
Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 10/124 (8%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPTAEILGSPD-LHVDEGSTINLT 107
+ + +DAG Y+C + V S +L D + + EG + T
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122
Query: 108 CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
CS P W +E ++ + G V G L I + E D G YSC
Sbjct: 123 CSPPPHY-PALSYRWL-LNEFPNFIPADGRRFVSQTTGN-----LYIAKTEASDLGNYSC 175
Query: 168 SPSN 171
++
Sbjct: 176 FATS 179
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 6e-12
Identities = 32/149 (21%), Positives = 47/149 (31%), Gaps = 32/149 (21%)
Query: 51 TLHIKWAQKRDAGVYECQ------LSTQPVRSFFVNLNVVV-------PTAEILGSPDLH 97
L+I + D G Y C T+ V S F L++ P+ + D +
Sbjct: 159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTY 218
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHD-EVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156
G + L C +P P I W D S S + L IQ
Sbjct: 219 ALTGQMVTLECFAFGNPVP--QIKWRKLDGSQTSKWLSSEPL-------------LHIQN 263
Query: 157 AELKDSGKYSCSPSNA---DVASVYVHVL 182
+ +D G Y C N D + +
Sbjct: 264 VDFEDEGTYECEAENIKGRDTYQGRIIIH 292
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 4e-14
Identities = 31/155 (20%), Positives = 51/155 (32%), Gaps = 21/155 (13%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSFFVNLNVVVPTAEIL 91
+ L K D GVY C++ + + L VV +
Sbjct: 254 NGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA-PKYE 312
Query: 92 GSP--DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT 149
P + V +G + + C + P P + W H+ + +S + VT
Sbjct: 313 QKPEKVIVVKQGQDVTIPCKVTGLPAPN--VVWSHNAKPLSGG-----------RATVTD 359
Query: 150 SYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
S L+I+ + D G Y C +N V V
Sbjct: 360 SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 4e-14
Identities = 27/191 (14%), Positives = 57/191 (29%), Gaps = 26/191 (13%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
++W + + + D+R +A +G+ + + D Y C
Sbjct: 126 NAYPKPLITW--KKRLSGADPNADVTDFDRRITAGP--DGNLYFTIVTKEDVSDIYKYVC 181
Query: 68 Q----LSTQPVRSFFVNLNVVV--------PTAEILGSPDLHVDEGSTINLTCSIKYSPE 115
+ V + V S D+ G + C +P
Sbjct: 182 TAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPM 241
Query: 116 PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN---- 171
Y ++ + + ++ + IT + LL + +D G Y+C N
Sbjct: 242 G--YPNYFKNGKDVNGNPED----RITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK 295
Query: 172 ADVASVYVHVL 182
S+ + V+
Sbjct: 296 PQKHSLKLTVV 306
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 7e-13
Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 20/166 (12%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
+ SW + + +A+ + EG +L Q D G Y+C T
Sbjct: 36 GVKYSW-KKDGKSY--------NWQEHNAALRKDEG---SLVFLRPQASDEGHYQCFAET 83
Query: 72 Q--PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129
S ++ A + + EG L C + + P I W
Sbjct: 84 PAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAY-PKPLITWKKRLSGA 142
Query: 130 SYDSSRGGVS---VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
++ G + + + + ++ D KY C+ NA
Sbjct: 143 DPNADVTDFDRRITAGPDGNLYFTI--VTKEDVSDIYKYVCTAKNA 186
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 8e-06
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
++ E + L C I+ + + Y W + + ++ ++G L+
Sbjct: 14 AEVLFRENNPTVLECIIEGNDQGVKYS-WKKDGKSY--NWQEHNAALRKDEGS-----LV 65
Query: 154 IQQAELKDSGKYSCSPSN 171
+ + D G Y C
Sbjct: 66 FLRPQASDEGHYQCFAET 83
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 6e-14
Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 17/155 (10%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLST-------QPVRSFFVNLNVVVPTAE---ILG 92
+ L I + D+G Y+C + V S L V+ ++
Sbjct: 175 TKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLIL 234
Query: 93 SPDLHVDEGSTINLTCSIKYSPEP--PAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTS 150
P ++V G N+TC+ + I W + I G S++T G +T +
Sbjct: 235 DPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWII-GLDFGVYSILTSSGGITEA 293
Query: 151 YLLIQQAELKDSGK-YSCSPSNA---DVASVYVHV 181
L + + G Y+C N + V +
Sbjct: 294 TLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 1e-12
Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 15/170 (8%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQL- 69
P S + HR V ++ R R + L I D+ Y C +
Sbjct: 53 PIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG--DLWIANYTSNDSHRRYLCTVT 110
Query: 70 -STQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEV 128
V ++ P + I + +L + I+L C I + I WY +++
Sbjct: 111 TKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGIL-YAKHYNNITWYKNNQE 169
Query: 129 ISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVY 178
+ D K + L+I EL+DSG+Y C DV
Sbjct: 170 LIIDG---------TKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKN 210
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-06
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 9/108 (8%)
Query: 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139
+ + P+ G+ + G + C ++D+ + + G +
Sbjct: 23 DSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLS----HRYNDKDNVVNWEKIGKT 78
Query: 140 VITEKGEVTTSYLLIQQAELKDSG-KYSCSPSN----ADVASVYVHVL 182
V L I DS +Y C+ + V H+
Sbjct: 79 RRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR 126
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 8e-14
Identities = 36/170 (21%), Positives = 52/170 (30%), Gaps = 14/170 (8%)
Query: 10 LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHR--------REGDEWTLHIKWAQKRD 61
L V W I V Q S R G+ L I + +D
Sbjct: 33 LAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGN-AALQITDVKLQD 91
Query: 62 AGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIF 121
AGVY C +S + + V P +I + S LTC + P+ +
Sbjct: 92 AGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKA--EVI 149
Query: 122 WYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
W D + + S EK TS L I + + C+
Sbjct: 150 WTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTT---TNEIFYCTFRR 196
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-05
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 25/116 (21%)
Query: 83 VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPA-----YIFWYHHDE-VISYDSS-- 134
V VP + V+ GS + + C + E ++W D+ +I +
Sbjct: 4 VTVPKDLYV------VEYGSNMTIECK--FPVEKQLDLAALIVYWEMEDKNIIQFVHGEE 55
Query: 135 ---------RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181
R ++ ++ + + L I +L+D+G Y C S + V
Sbjct: 56 DLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITV 111
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 9e-14
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 84 VVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT 142
P +I P GS ++ TCS S + P W +E + +
Sbjct: 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 143 EKGEVT--TSYLLIQQAELKDSGKYSCSPSN------ADVASVYVH 180
+ GE+ T+ L ++ E G Y C SN + A + ++
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 1e-13
Identities = 26/169 (15%), Positives = 43/169 (25%), Gaps = 29/169 (17%)
Query: 34 TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-------------TQPVRSFFVN 80
++ R + ++ Q D G Y QL +
Sbjct: 45 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKE 104
Query: 81 LNVVVPTAEILGSP------DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS 134
P V + L C + +I WY + IS D
Sbjct: 105 AEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK-KETHIVWYKDEREISVDEK 163
Query: 135 RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN-ADVASVYVHVL 182
+ G T LLI + KD+G Y + + ++
Sbjct: 164 H-----DFKDGICT---LLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 204
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-07
Identities = 7/79 (8%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 95 DLHVDEGSTINLT-CSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
+ + E + + K S + + +++ I + +
Sbjct: 11 AVEILEKGQVRFWMQAEKLSGNAK--VNYIFNEKEIFEGPKY----KMHIDRNTGIIEMF 64
Query: 154 IQQAELKDSGKYSCSPSNA 172
+++ + +D G Y+ +
Sbjct: 65 MEKLQDEDEGTYTFQLQDG 83
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 2e-13
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 19/141 (13%)
Query: 54 IKWAQKRDAGVYECQLSTQP--VRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTCSI 110
++ +++D G Y C + S +L + V + P D V +G T L C
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECG- 131
Query: 111 KYSPEPPAYIFWYHHDEVISYDSSRGGVS----VITEKGEVTTSYLLIQQAELKDSGKYS 166
P + W + + + I + G LLI E D G Y
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN-----LLISNVEPIDEGNYK 186
Query: 167 CSPSN------ADVASVYVHV 181
C N + A + V V
Sbjct: 187 CIAQNLVGTRESSYAKLIVQV 207
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-06
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
DL V + L C ++ PEP I W+ E +S + + + Y +
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEP--TIEWFKDGEPVSTNEKKSHRVQFKDGALF--FYRTM 73
Query: 155 QQAELKDSGKYSCSPSN----ADVASVYVHVL 182
Q + +D G+Y C N A + +
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 2e-13
Identities = 40/212 (18%), Positives = 70/212 (33%), Gaps = 37/212 (17%)
Query: 7 LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREG-------DEWTLHIKWAQK 59
LKG P R + + + + G SD + G TL +
Sbjct: 40 LKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHP 99
Query: 60 RDAGVYECQLSTQPVRSFF------VNLNVVV----PTAEILGSPDLHVDEGSTINLTCS 109
+D G Y CQ++ +R+ F V L V + + + VDEG+ I +TC
Sbjct: 100 QDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCP 159
Query: 110 IKYSPEPPAYIFWY------------HHDEVISYDSSRGGVSVITEKGEVTTSY---LLI 154
+ WY + + + + G + S L+I
Sbjct: 160 CTDCANAN--VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVI 217
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVLN 183
+ A++ D+G+ C + A +L
Sbjct: 218 RAAKITDAGRVWCELATGQGELDADRSSTILK 249
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 2e-05
Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 24/103 (23%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
++ V G T+ L CS + + + P I W G +G
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 152 -----------------------LLIQQAELKDSGKYSCSPSN 171
L + +D G+Y C +
Sbjct: 69 DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ 111
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 3e-13
Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 26/145 (17%)
Query: 51 TLHIKWAQKRDAGVYECQ-LSTQPVRSFFVNLNVVVPTAEILGSP----------DLHVD 99
L+I + D G Y C S +S F ++P E P D++
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159
G + L C +P P I W E + + + + L I +L
Sbjct: 127 MGQNVTLECFALGNPVP--DIRWRKVLEPMPSTAEI----------STSGAVLKIFNIQL 174
Query: 160 KDSGKYSCSPSNA---DVASVYVHV 181
+D G Y C N D ++V
Sbjct: 175 EDEGIYECEAENIRGKDKHQARIYV 199
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-09
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P++ V EG + L C Y W +E + + V G L
Sbjct: 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWL-LNEFPVFITMDKRRFVSQTNGN-----LY 69
Query: 154 IQQAELKDSGKYSCSPSNA 172
I E D G YSC S+
Sbjct: 70 IANVEASDKGNYSCFVSSP 88
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 3e-13
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 23/160 (14%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLS-----TQPVRSFFVNLNVVVPTAE----ILGS 93
G + L + ++ G Y C S Q + + + I+
Sbjct: 155 IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSP 214
Query: 94 PD--LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT------EKG 145
+ + VD GS I L C++ +W + VI D G + ++
Sbjct: 215 ANETMEVDLGSQIQLICNVTGQLSD--IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRR 272
Query: 146 EVTTSYLLIQQAELKD-SGKYSCSPSNA---DVASVYVHV 181
+ L I + E + ++C N D A + +
Sbjct: 273 STLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 5e-13
Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 29/176 (16%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS- 70
++W + S T S ++ S IH+ + L A+ D+G Y C +
Sbjct: 35 KGTITWYK--------DDSKTPVSTEQASRIHQHKE---KLWFVPAKVEDSGHYYCVVRN 83
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDL----HVDEGSTINLTCSIKYSPE----PPAYIFW 122
+ ++ V + + + L C + + W
Sbjct: 84 SSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQW 143
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVY 178
Y + + D+ L++ K G Y+C S + Y
Sbjct: 144 YKDCKPLLLDNIH---------FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY 190
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 5e-06
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
L C + + I WY D + + S I + E L
Sbjct: 14 ILVSSANEIDVRPCPLNPNEHKGT-ITWYKDDSKTPVSTEQA--SRIHQHKEK----LWF 66
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
A+++DSG Y C N+ + +
Sbjct: 67 VPAKVEDSGHYYCVVRNSSYCLRIKISAKFV 97
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 4e-13
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGV 138
L V P I + H G + C I+ +P PP I W + V+ +S
Sbjct: 7 GTLTVNGP-PIISSTQTQHALHGEKGQIKCFIRSTP-PPDRIAWSWKENVLESGTSGRYT 64
Query: 139 SVITEKGEVTTSYLLIQQAELKD-SGKYSCSPSNA---DVASVYVHV 181
E S L I D Y+C+ N+ D + +
Sbjct: 65 VETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 5e-13
Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 1/125 (0%)
Query: 58 QKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPP 117
+ C + R + + P L + G + + C
Sbjct: 199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAV-HVNHG 257
Query: 118 AYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASV 177
+ W ++ + + + T + + + + D+G Y+CS S S
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA 317
Query: 178 YVHVL 182
V ++
Sbjct: 318 LVTIV 322
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 3e-12
Identities = 24/177 (13%), Positives = 45/177 (25%), Gaps = 20/177 (11%)
Query: 8 KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67
++W + L G+Y S + R + + D G Y C
Sbjct: 253 HVNHGFGLTWEL--ENKALEEGNYFEMSTYSTNRTMIRIL---FAFVSSVARNDTGYYTC 307
Query: 68 QLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE 127
S P +S V + S D +D+ + ++ P W +
Sbjct: 308 SSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV--RFKAYPQIRCTWTFSRK 365
Query: 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+KG + G+Y N +++
Sbjct: 366 SFP----------CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 7e-10
Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 15/130 (11%)
Query: 57 AQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEP 116
+ + Y ++ L + + + VD ++I L +
Sbjct: 22 SSVGKSSSYPMV--SESPEDLGCALRPQSSGT-VYEAAAVEVDVSASITLQVLVDAPGNI 78
Query: 117 PAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---D 173
W ++ ++I + +G+Y +
Sbjct: 79 --SCLWVFKHSSLNCQPHFDLQ-------NRGVVSMVILKMTETQAGEYLLFIQSEATNY 129
Query: 174 VASVYVHVLN 183
V + N
Sbjct: 130 TILFTVSIRN 139
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 3e-08
Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 19/147 (12%)
Query: 42 IHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR-SFFVNLNVVVPTAEILGSPDLHVDE 100
+ ++ I + AG Y + ++ + +++ L P E
Sbjct: 95 FDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME 154
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHD-EVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159
L C + PEP + W D + S V E ++ +
Sbjct: 155 NQDA-LVCISESVPEPI--VEWVLCDSQGESCKEESPAVVKKEE--------KVLHELFG 203
Query: 160 KDSGKYSCSPSNA---DVASVYVHVLN 183
D C N + ++ LN
Sbjct: 204 TD---IRCCARNELGRECTRLFTIDLN 227
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 5e-13
Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 31/182 (17%)
Query: 14 RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQ 72
++W + S + + + ++G L + A + D+G Y C
Sbjct: 56 NLTWHK--------NDSARTVPGEEETRMWAQDG---ALWLLPALQEDSGTYVCTTRNAS 104
Query: 73 PVRSFFVNLNVVVPTAEIL--GSPDLHVDEGSTINLTCSI---KYSPEPPAYIFWYHHDE 127
+ L V T L S + ++ L C + I WY
Sbjct: 105 YCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSL 164
Query: 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD-------VASVYVH 180
++ D+ + ++ +G T++LL+ L+D+G Y C + A S+ +
Sbjct: 165 LLDKDNEK----FLSVRG---TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELR 217
Query: 181 VL 182
+
Sbjct: 218 IK 219
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 5e-12
Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 20/151 (13%)
Query: 51 TLHIKWAQKRDAGVYECQLS-----TQPVRSFFVNLNVVVPTAE----ILGSP-DLHVDE 100
L + DAG Y C L+ Q + + L + E I+ +
Sbjct: 181 HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASL 240
Query: 101 GSTINLTCSIKYSP-EPPAYIFWYHHDEVI---SYDSSR---GGVSVITEKGEVT-TSYL 152
GS + + C + P + W+ ++ +Y R G +E E L
Sbjct: 241 GSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPL 300
Query: 153 LIQQAELKDSG-KYSCSPSN-ADVASVYVHV 181
+ +D + C N ++ V
Sbjct: 301 IFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-07
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 14/97 (14%)
Query: 94 PDLHVDEGSTINLTCSIKYSP-----EPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
EG + L C P + W+ +D + + + +
Sbjct: 26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEE--TRMWAQDGA- 82
Query: 149 TSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
L + A +DSG Y C+ NA D S+ + V
Sbjct: 83 ---LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVF 116
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 8e-13
Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 23/183 (12%)
Query: 12 PTRVSWIR-HRDIHILTVGSYTYTSDQRFSAIHRREGDEW----TLHIKWAQKRDAGVYE 66
+W + + + + S+ F+ + +L + +D GVY
Sbjct: 28 LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT 87
Query: 67 CQLSTQPVRSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY 123
++ + R + V T L + V E ++ LTC S + A I W
Sbjct: 88 LDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC---LSNDIGANIQWL 144
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN----ADVASVYV 179
+ + + + R +S S L I + +D+G+Y C SN S+ +
Sbjct: 145 FNSQSLQ-LTERMTLSQ-------NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL 196
Query: 180 HVL 182
++
Sbjct: 197 DII 199
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 1e-12
Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
Query: 50 WTLHIKWAQKRDAGVYECQ--LSTQPVRSFFVNLNVVVPTA--EILGSPDLHVDEGSTIN 105
+ ++ + Y C+ + + V S + + ++ + + V +G I
Sbjct: 141 YDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENIT 200
Query: 106 LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165
L C + + W + + + + S L I AEL+DSG Y
Sbjct: 201 LMCIVIGNEVV--NFEWTYPRKESGRLVEPV-TDFLLDMPYHIRSILHIPSAELEDSGTY 257
Query: 166 SCSPSNA-----DVASVYVHVL 182
+C+ + + D ++ + V+
Sbjct: 258 TCNVTESVNDHQDEKAINITVV 279
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 3e-06
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 19/94 (20%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P+L ++ ST LTCS A + W + + ++ + +S L
Sbjct: 8 PELVLNVSSTFVLTCS------GSAPVVWERMSQEPPQEMAK-------AQDGTFSSVLT 54
Query: 154 IQQAELKDSGKYSCSPSNA------DVASVYVHV 181
+ D+G+Y C+ +++ + +Y+ V
Sbjct: 55 LTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV 88
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-05
Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 34/135 (25%)
Query: 51 TLHIKWAQKRDAGVYEC--QLSTQPVRSFFVNLNVVVPTAEIL------GSPDLHVDEGS 102
L + D G Y C S L + VP + + + E +
Sbjct: 52 VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEIT 111
Query: 103 TINLTCSIKYSPEPPAYIFWYHHDEV----ISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158
I + C + +P + + + YD RG +
Sbjct: 112 EITIPCRVT---DPQLVVTLHEKKGDVALPVPYDHQRGFSGIF----------------- 151
Query: 159 LKDSGKYSCSPSNAD 173
+ Y C + D
Sbjct: 152 --EDRSYICKTTIGD 164
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-12
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 15/123 (12%)
Query: 63 GVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFW 122
Y S R + ++ G ++ EG+ +N+TC + P A I W
Sbjct: 1 ATYAAASSALVPR------GSHMYAPKLQGPVAVYTWEGNQVNITC--EVFAYPSATISW 52
Query: 123 YHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYV 179
+ +++ + S I + SYL + D G Y+C+ N + +
Sbjct: 53 FRDGQLLPSSNY----SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Query: 180 HVL 182
Sbjct: 109 VQA 111
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 3e-12
Identities = 31/186 (16%), Positives = 50/186 (26%), Gaps = 31/186 (16%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS- 70
+ W R L + R I + + L + D G Y C L
Sbjct: 47 GLTLIWYWTRQDRDLEEPINFRLPENR---ISKEKD---VLWFRPTLLNDTGNYTCMLRN 100
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDLHVD----EGSTINLTC---SIKYSPEPPAYIFWY 123
T L VV + L V E +TC + I WY
Sbjct: 101 TTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWY 160
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD-------VAS 176
I ++ L A + ++G Y+C + + +
Sbjct: 161 MGCYKIQNFNNV----------IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRT 210
Query: 177 VYVHVL 182
+ V V+
Sbjct: 211 LTVKVV 216
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 2e-11
Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 23/162 (14%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLS-----TQPVRSFFVNLNVVVPTA----EILGS 93
+ + L A + G Y C ++ + + + VV ++ S
Sbjct: 170 NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHS 229
Query: 94 P----DLHVDEGSTINLTCSIK--YSPEPPAYIFWYHHDEVISYDSSRG----GVSVITE 143
P + G + + C++ + + ++W + + +S
Sbjct: 230 PNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRT 289
Query: 144 KGEVTTSYLLIQQAELKD-SGKYSCSPSNA---DVASVYVHV 181
+ E T L I++ +D Y C +A + V
Sbjct: 290 EDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 7e-05
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 19/104 (18%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAY---------IFWYHHD---EVISYDSSRGGVSVI 141
+ V E + C + Y + WY ++ + R + I
Sbjct: 15 RQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRI 74
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+++ +V L + L D+G Y+C N + + V+
Sbjct: 75 SKEKDV----LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVV 114
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 3e-12
Identities = 25/183 (13%), Positives = 48/183 (26%), Gaps = 23/183 (12%)
Query: 12 PTRVSWIR-HRDIHILTVGSYTYTSDQRFSAIHRREGDEW--------TLHIKWAQKRDA 62
+ W R + S + +H G L + AQ D
Sbjct: 30 HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDE 89
Query: 63 GVYECQLSTQP--VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEP 116
Y C + LNV +++ + TC+ + P
Sbjct: 90 RDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNG-NP 148
Query: 117 PAYIFWYHHDEVISYDSSRGGVSVITEKGEV-------TTSYLLIQQAELKDSGKYSCSP 169
I WY + + + +T + TS L ++ + + C+
Sbjct: 149 APKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAA 208
Query: 170 SNA 172
+
Sbjct: 209 HYS 211
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 1e-04
Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 17/106 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYDSSRGGVSVITEKGE-- 146
P + V G ++ L C+ + + ++ + S + + V
Sbjct: 8 PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGR 67
Query: 147 ------VTTSYLLIQQAELKDSGKYSC----SPSNADVASVYVHVL 182
+ L++ +A++ D Y C + A+ ++V
Sbjct: 68 SPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF 113
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 4e-12
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V EG + ++ ++ P+P + W + + + D R + E G L I
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKP--VVSWLRNRQPVRPDQRR--FAEEAEGGLCR---LRI 66
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
AE D+G Y+C N + V
Sbjct: 67 LAAERGDAGFYTCKAVNEYGARQCEARLEV 96
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 5e-12
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 11/95 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V G +++ P + WYH+ + +SS+ + G +T L I
Sbjct: 17 SHRVPCGQNTRFILNVQSKPTA--EVKWYHNGVELQ-ESSK--IHYTNTSGVLT---LEI 68
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVLNGEY 186
DSG Y +N + V G+Y
Sbjct: 69 LDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGDY 103
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-12
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V EG ++ L C I P P +FW ++E++ +++ R +S+ + T LLI
Sbjct: 24 SKKVLEGDSVKLECQISAIPPP--KLFWKRNNEMVQFNTDR--ISLYQDNTGRVT--LLI 77
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ KD+G Y+ S N + + V
Sbjct: 78 KDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 8e-12
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ + G T NL +P+P W D + + ++ K T+ +
Sbjct: 11 KIKIKAGFTHNLEVDFIGAPDP--TATWTVGDSGAA-LAPE---LLVDAKSSTTS--IFF 62
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
A+ DSG Y N D A V V
Sbjct: 63 PSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-11
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V G ++ L + + W + I +S + V + L I
Sbjct: 16 DQKVRAGESVELFGKVTGTQPI--TCTWMKFRKQIQ-ESEH--MKVENSENGSK---LTI 67
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
A + G Y+ N A V + V+
Sbjct: 68 LAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 1e-11
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS--SRGGVSVITEKGEVTTS 150
S + + G + L C+ + W + + +R + + + S
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 151 YLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
L I D G Y+C+ S+ S +V V
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-11
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ EG + TC + +P+P I+W+ + IS S ++ T L
Sbjct: 17 HYKIFEGMPVTFTCRVAGNPKP--KIYWFKDGKQISPKSDH----YTIQRDLDGTCSLHT 70
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ L D G Y+ +N + + V
Sbjct: 71 TASTLDDDGNYTIMAANPQGRISCTGRLMV 100
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-11
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
G +NL + P P + W + D+SR V V T + ++QA
Sbjct: 36 RKVGEQLNLVVPFQGKPRPQ--VVWTKGGAPL--DTSR--VHVRTSDFDTV---FFVRQA 86
Query: 158 ELKDSGKYSCSPSNA---DVASVYVHVL 182
DSG+Y S D A++ + V+
Sbjct: 87 ARSDSGEYELSVQIENMKDTATIRIRVV 114
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 6e-11
Identities = 22/164 (13%), Positives = 44/164 (26%), Gaps = 35/164 (21%)
Query: 14 RVSWIRHRD---IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70
+ W + D I T+ + TL IK + D +Y+ +
Sbjct: 32 DIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK-----NGTLKIKHLKTDDQDIYKVSIY 86
Query: 71 TQP---VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE 127
V +L + + P + LTC + +P + Y +
Sbjct: 87 DTKGKNVLEKIFDLKIQER----VSKPKISW-TCINTTLTCEVMNGTDP--ELNLYQDGK 139
Query: 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+ ++ + S K+ C+ N
Sbjct: 140 HLKLSQR-----------------VITHKWTTSLSAKFKCTAGN 166
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-06
Identities = 17/99 (17%), Positives = 25/99 (25%), Gaps = 6/99 (6%)
Query: 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
EI + + G INL + I W + R EK
Sbjct: 2 EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61
Query: 149 TSY---LLIQQAELKDSGKYSCSPSNAD---VASVYVHV 181
L I+ + D Y S + V +
Sbjct: 62 LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL 100
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 7e-11
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 81 LNVVVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139
V I+ D+ V EGS+ C + SP + W+ + +
Sbjct: 7 GLVQGRRVHIIEDLEDVDVQEGSSATFRC--RISPANYEPVHWFLDKTPLH-ANEL--NE 61
Query: 140 VITEKGEVTTSYLLIQQAELKDSGKYSC 167
+ + G L ++Q LKDSG
Sbjct: 62 IDAQPGGYHV--LTLRQLALKDSGTIYF 87
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 7e-11
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 14/98 (14%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
I P + V T L+C SP P I W ++S SR E G
Sbjct: 10 VIRQGPVNQTVAVDGTFVLSCVATGSPVP--TILWRKDGVLVSTQDSR---IKQLENGV- 63
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
L I+ A+L D+G+Y+C S S Y+ V
Sbjct: 64 ----LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 7e-11
Identities = 22/168 (13%), Positives = 56/168 (33%), Gaps = 26/168 (15%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREG-----DEWTLHIKWAQKRDAGVYE 66
++W + + + + S + ++ ++L + + D G Y
Sbjct: 28 VNFITW-LFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYR 86
Query: 67 CQLSTQP---VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY 123
Q+ST+ + S+ + + + ++ L + ++LTCS++ + + ++ W
Sbjct: 87 AQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFR-WE 145
Query: 124 HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+S VS + Y+C N
Sbjct: 146 ALGNTLS-SQPNLTVSWDP---------------RISSEQDYTCIAEN 177
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 8e-11
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V G + + + E A + W + ++ + S + G+ L+
Sbjct: 17 DQQVFVGDRVEMAVEVS---EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHI--LIF 71
Query: 155 QQAELKDSGKYSCSPSNADVASVYVHV 181
+D G+Y + + V
Sbjct: 72 SDVVQEDRGRYQVITNG-GQCEAELIV 97
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 8e-11
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 13 TRVSWIRHRDIHILTVGSYT----YTSDQRFSAIHRREGDE---WTLHIKWAQKRDAGVY 65
++++W RH + + V T Y+ +R + R G E +L + + D G Y
Sbjct: 35 SQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNY 94
Query: 66 ECQLSTQP--VRSFFVNLNVVVP 86
C T P RS + L V+
Sbjct: 95 TCLFVTFPQGSRSVDIWLRVLAK 117
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 37.9 bits (88), Expect = 4e-04
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 26/122 (21%)
Query: 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFW--------------YHH 125
++ V P ++ G G ++ L C ++ ++ +H
Sbjct: 1 DVVVQAP-TQVPGFL------GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQ 53
Query: 126 DEVISYDSS-RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS----PSNADVASVYVH 180
+ SY S R E+ + L + ++D G Y+C P + +++
Sbjct: 54 TQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113
Query: 181 VL 182
VL
Sbjct: 114 VL 115
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 9e-11
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGV 138
V L V P ++ + + I ++ +P P + W H+ + + S+
Sbjct: 1 VALTVYYP-PRVVSLEEPELRLEHCI--EFVVRGNPPP--TLHWLHNGQPL--RESKIIH 53
Query: 139 SVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
++GE++ LL + ++G Y+ N ++ H L
Sbjct: 54 VEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL 100
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-10
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+EG + C I+ + + WY + +S + + E G L +
Sbjct: 10 HAVGEEGGHVKYVCKIENYDQST-QVTWYFGVRQLE-NSEK--YEITYEDGVAI---LYV 62
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ D G Y C N D + + V
Sbjct: 63 KDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-10
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V +GS + + P+P WY + I S R + + V L+I
Sbjct: 14 SQTVGQGSDAHFRVRVVGKPDP--ECEWYKNGVKIE-RSDR--IYWYWPEDNVCE--LVI 66
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ +DS N + ++ V
Sbjct: 67 RDVTGEDSASIMVKAINIAGETSSHAFLLV 96
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 1e-10
Identities = 24/176 (13%), Positives = 42/176 (23%), Gaps = 23/176 (13%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS- 70
+ WI TV + C
Sbjct: 187 LEQAGWILTELEQSATVMKSGGLPSLG------------LTLANVTSDLNRKNVTCWAEN 234
Query: 71 TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130
V +NV P + E + S+ P P + W + V++
Sbjct: 235 DVGRAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPS--LRWLFNGSVLN 288
Query: 131 YDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
S + E L + Q ++G Y+ +N AS+ +
Sbjct: 289 ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 9e-08
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 12/92 (13%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
P+ VD G + L C ++ W + S + G +
Sbjct: 165 VPNASVDVGDDVLLRCQVEGRGLEQ--AGWILTELEQSATVMKSGGL-------PSLGLT 215
Query: 153 LIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
L + +C N SV V+V
Sbjct: 216 LANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-10
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 14/98 (14%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
IL P + + T L C P P I W R + I E+G
Sbjct: 10 IILQGPANQTLAVDGTALLKCKATGDPLP--VISWLKEGFTFPGRDPR---ATIQEQGT- 63
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
L I+ + D+G Y+C +++ S + V
Sbjct: 64 ----LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 1e-10
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 6/135 (4%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR-SFFVNLNVVVPTAEILGSP 94
D + EG TL + + Y C + + + + + + +
Sbjct: 40 DSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHL 99
Query: 95 DLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
++ G I + CS+ P I D ++ + K T S +
Sbjct: 100 SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEF---LEDADRKSLETKSLEV 156
Query: 154 IQQAELKDSGK-YSC 167
++D GK C
Sbjct: 157 TFTPVIEDIGKVLVC 171
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-06
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 14/87 (16%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
G +++LTCS P W DS G E TTS L +
Sbjct: 13 AQIGDSVSLTCSTTGCESPF--FSWRTQI-----DSPLNGK----VTNEGTTSTLTMNPV 61
Query: 158 ELKDSGKYSCSPSNA---DVASVYVHV 181
+ Y C+ + + V +
Sbjct: 62 SFGNEHSYLCTATCESRKLEKGIQVEI 88
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 2e-10
Identities = 33/190 (17%), Positives = 55/190 (28%), Gaps = 32/190 (16%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQ--------RFSAIHRREGDEWTLHIKWAQKRDAG 63
P V W R +I T D+ RF + + +L I A+ D G
Sbjct: 36 PLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTG 95
Query: 64 VYECQLSTQP-----VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPE--P 116
Y ++ + +NL V + ++ G L+CS+ S E P
Sbjct: 96 SYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGP 155
Query: 117 PAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV-- 174
P W G + +S L + +C
Sbjct: 156 PLTFSWT------------GNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQV 203
Query: 175 ---ASVYVHV 181
+V ++V
Sbjct: 204 TTERTVQLNV 213
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-10
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 81 LNVVVPTA-EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGV 138
L V+ A I G+ + G +I ++C+ +P P I W+ +E + + S
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPP--QIMWFKDNETLV-EDSG--- 56
Query: 139 SVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
++ + G L I++ +D G Y+C + + +
Sbjct: 57 -IVLKDGNRN---LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-10
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D G + L C + E A + W+ + E I + E L+I
Sbjct: 16 DTTAYCGERVELECEVS---EDDANVKWFKNGEEIIPGPKSR----YRIRVEGKKHILII 68
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHVLNGEYTG 188
+ A D+ +YS + A + V + +G +G
Sbjct: 69 EGATKADAAEYSVMTTGGQSSAKLSVDLKSGPSSG 103
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-10
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V+ G I L C I S P W + + +S R + +KG L+I
Sbjct: 16 DQTVNLGKEICLKCEI--SENIP--GKWTKNGLPVQ-ESDR---LKVVQKG--RIHKLVI 65
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHVLNGEYTG 188
A +D G Y +P +V VHV++G +G
Sbjct: 66 ANALTEDEGDYVFAPDAYNVTLPAKVHVISGPSSG 100
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 7e-10
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V +T+ C +P P + W + + + GG V + L++
Sbjct: 17 LHAVPAANTVKFRCPAGGNPMP--TMRWLKNGKEFKQEHRIGGYKVRNQHWS-----LIM 69
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ D G Y+C N + ++ V+
Sbjct: 70 ESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 7e-10
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH-HDEVISYDSSRGGVSVITEKGEVTTSY 151
DL++ EG L C P + + W + V+S+ S +SV+ +
Sbjct: 359 PRDLNISEGRMAELKCR----TPPMSSVKWLLPNGTVLSHASRHPRISVLND------GT 408
Query: 152 LLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
L L D+G Y+C +N AS Y++V
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 8e-10
Identities = 18/107 (16%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 84 VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
++ T I + ++ ++G +I L C + + + W D++++ ++ G +
Sbjct: 1 MMMTGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPS 60
Query: 144 KGEVTTSY----LLIQQAELKDSGKYSCS----PSNADVASVYVHVL 182
+ L +Q + D+G+Y C P +++ VL
Sbjct: 61 FKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 8e-05
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 13 TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72
T+V+W + + + + F L ++ D G Y C T
Sbjct: 35 TQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPG-LGLTLQSLTVNDTGEYFCIYHTY 93
Query: 73 PVRSF--FVNLNVVVP 86
P ++ + L V+
Sbjct: 94 PDGTYTGRIFLEVLES 109
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 8e-10
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V S P P W + I+ + ++E L I
Sbjct: 15 DTTVSSDSVAKFAVKATGEPRPT--AIWTKDGKAIT-QGGK---YKLSEDKGGFF--LEI 66
Query: 155 QQAELKDSGKYSCSPSN 171
+ + DSG Y+C+ N
Sbjct: 67 HKTDTSDSGLYTCTVKN 83
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 1e-09
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 83 VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT 142
P + L V G + L C ++ + I W + +
Sbjct: 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLR---DDVQSINWLRDGVQLV----------ES 52
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCSPSN-ADVASVYVHV 181
+ +T + ++ + DSG Y+C S+ + + Y V
Sbjct: 53 NRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-09
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH-HDEVISYDSSRGGVSVITEKGEVTTSY 151
DL+V EG L C + + W + V+++ + + ++V+++
Sbjct: 348 PADLNVTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSD------GT 398
Query: 152 LLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
L ++D+G Y+C SN+ AS ++V
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-09
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V EG L CS++ +P P I W + + I Y S E G L I
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVP--RITWLLNGQPIQYARS------TCEAGVAE---LHI 68
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
Q A +D G Y+C NA S +V V
Sbjct: 69 QDALPEDHGTYTCLAENALGQVSCSAWVTV 98
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-09
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V EG + + C + + W + + SSR + + L++
Sbjct: 17 TMEVLEGESCSFECVLSH-ESASDPAMWTVGGKTVG-SSSR--FQATRQGRKYI---LVV 69
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHVLNGEYTG 188
++A D+G+ S AS+ V +G +G
Sbjct: 70 REAAPSDAGEVVFSVRGLTSKASLIVRERSGPSSG 104
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-09
Identities = 30/162 (18%), Positives = 50/162 (30%), Gaps = 14/162 (8%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
T + IR + + + + G HI Q RD+G Y C +
Sbjct: 31 CTELEGIRAS-LQKVENDTSLQSERATLLEEQLPLGK-ALFHIPSVQVRDSGQYRCLVIC 88
Query: 72 QP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130
++ + V I + L V + LTC + P + W + +
Sbjct: 89 GAAWDYKYLTVKVKASYMRI-DTRILEVPGTGEVQLTCQARGYPLA--EVSWQNVSVPAN 145
Query: 131 YDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
R + TS L ++ S +SC NA
Sbjct: 146 TSHIRTPEGLYQ-----VTSVLRLKPQ---PSRNFSCMFWNA 179
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-05
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 83 VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYD---SSRGGVS 139
V P VD GS+++L C + + + +
Sbjct: 5 VTAPKEVYT------VDVGSSVSLECD--FDRRECTELEGIRASLQKVENDTSLQSERAT 56
Query: 140 VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173
++ E+ + + I +++DSG+Y C
Sbjct: 57 LLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGA 90
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-09
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V EG + +C P P + W +V+S + +T +T I
Sbjct: 23 SMTVYEGESARFSCDTDGEPVPT--VTWLRKGQVLSTSARH----QVTTTKYKST--FEI 74
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ D G YS N+ A + +
Sbjct: 75 SSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-09
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 12/105 (11%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
G T+ + C K ++ +E + S G VSV L
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMT--KVWVSPSNEQVLSQGSNGSVSV-------RNGDLF 304
Query: 154 IQQAELKDSGKYSCSPSNA---DVASVYVHVLNGEYTGWSESLGT 195
++ +++D G Y+C + SV + V N G ++L
Sbjct: 305 FKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNA 349
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-09
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V G + L C + + P + W + I S + + +G + L+I
Sbjct: 17 DQWVAPGEDVELRCELSRAGTP---VHWLKDRKAIR-KSQK---YDVVCEGTMAM--LVI 67
Query: 155 QQAELKDSGKYSCSPSNADVASVYVHV 181
+ A LKD+G+Y+C ++ +HV
Sbjct: 68 RGASLKDAGEYTCEVEA-SKSTASLHV 93
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-09
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P V +G I LT + + A + W + + I S+ + G T L
Sbjct: 24 PAYQVSKGHKIRLTVELA---DHDAEVKWLKNGQEIQMSGSK---YIFESIGAKRT--LT 75
Query: 154 IQQAELKDSGKYSCSPSNADV-ASVYV 179
I Q L D Y C ++V
Sbjct: 76 ISQCSLADDAAYQCVVGGEKCSTELFV 102
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-09
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 79 VNLNVVVPTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGG 137
L V + + EG+T L C + S P + W+ E + D R
Sbjct: 11 AMLTVRALPIKFTEGLRNEEATEGATAVLRCEL--SKMAP--VEWWKGHETLR-DGDR-- 63
Query: 138 VSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV-ASVYVHVL 182
S+ + L I+ +D+G+Y C A + V +
Sbjct: 64 HSLRQDGARCE---LQIRGLVAEDAGEYLCMCGKERTSAMLTVRAM 106
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-09
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
DL V EG L C + P + W + + V+ + S+ E + L++
Sbjct: 17 DLEVLEGGAATLRCVLSSVAAP---VKWCYGNNVLR-PGDK--YSLRQEGAMLE---LVV 67
Query: 155 QQAELKDSGKYSCSPSNAD-VASVYVHVL 182
+ +DSG+YSCS + A++ V L
Sbjct: 68 RNLRPQDSGRYSCSFGDQTTSATLTVTAL 96
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-09
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
DL V EG + C + P P + W + + DS+ ++ + V + L+I
Sbjct: 18 DLTVQEGKLCRMDCKVSGLPTP--DLSWQLDGKPVRPDSAH---KMLVRENGVHS--LII 70
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ +D+G Y+C +N + S+ + V
Sbjct: 71 EPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 4e-09
Identities = 20/160 (12%), Positives = 41/160 (25%), Gaps = 26/160 (16%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
V W + + + + + + + F + +L I D YE +
Sbjct: 23 LKEVLW-KKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81
Query: 72 QPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
+ L V+ + P ++ E S LTC + + + Y E +
Sbjct: 82 I-TDTMKFFLYVLEM----VSKPMIYW-ECSNATLTCEVLEGTDVE--LKLYQGKEHLRS 133
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+ + C N
Sbjct: 134 LRQ-----------------KTMSYQWTNLRAPFKCKAVN 156
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-09
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
L + LTC + WY + + +S V+ G L++
Sbjct: 19 SLTFTTSERVVLTCELSR---VDFPATWYKDGQKVE-ESEL---LVVKMDGRKHR--LIL 69
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHVLNGEYTG 188
+A+++DSG++ C V V +G +G
Sbjct: 70 PEAKVQDSGEFECRTEGVSAFFGVTVQDPSGPSSG 104
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 4e-09
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139
+ + VDEG T+ C + +PP I W + + S G ++
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVC--RADGDPPPAILWLSPRKHLVSAKSNGRLT 436
Query: 140 VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
V + L ++ A+++D+G Y C +NA D ++HV
Sbjct: 437 VFPD------GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 4e-09
Identities = 20/149 (13%), Positives = 33/149 (22%), Gaps = 31/149 (20%)
Query: 44 RREGDEWTLHIKWAQKRDAGVYECQ-----LSTQPVRSFFVNLNVVVP--TAEILGSPDL 96
+ G L +K + + + C ++ L V+ E +
Sbjct: 321 QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW 380
Query: 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156
E S C +P P + G
Sbjct: 381 TWPENSQQTPMCQAWGNPLP--ELKCLKD-------------------GTFPLPIGESVT 419
Query: 157 AELKDSGKYSCSPSNA---DVASVYVHVL 182
G Y C + V V+VL
Sbjct: 420 VTRDLEGTYLCRARSTQGEVTREVTVNVL 448
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-06
Identities = 12/124 (9%), Positives = 31/124 (25%), Gaps = 12/124 (9%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQ-PVRSFFVNLNVVVPTAEILGSP-DLHVDEGSTINLTC 108
+ + ++ C + + L V + +P G + L C
Sbjct: 49 RKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRC 108
Query: 109 SI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
+ +P + ++ + + + GE + +SC
Sbjct: 109 QVEGGAPRANLTVVLLRGEKELKREPAV---------GEPAEVTTTVLVRRDHHGANFSC 159
Query: 168 SPSN 171
Sbjct: 160 RTEL 163
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-06
Identities = 20/158 (12%), Positives = 39/158 (24%), Gaps = 31/158 (19%)
Query: 36 DQRFSAIHRREGDE-WTLHIKWAQKRDAGVYE--CQLSTQPV-RSFFVNLNVVVPTAEIL 91
DQR + D D G C + + + + A +
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 288
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
V EG+ + + C P + + +
Sbjct: 289 ILTKPEVSEGTEVTVKCEA--HPRAKVTLNGVPAQPLGP------------------RAQ 328
Query: 152 LLIQQAELKDSGKYSCSPSNA-------DVASVYVHVL 182
LL++ + +SCS + + + VL
Sbjct: 329 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 366
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 8e-05
Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 21/153 (13%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQ---------LSTQPVRSFFVNLNVVVPTAEILGS 93
E E T + + + C+ L S L V A
Sbjct: 135 AVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQL 194
Query: 94 P-DLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
++ + + CS+ P A + D+ ++ + G +
Sbjct: 195 VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN-------DSFSAKA 247
Query: 152 LLIQQAELKDSGKYSCSPSNADV---ASVYVHV 181
+ AE + + + +C+ + V +
Sbjct: 248 SVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 5e-09
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 15/99 (15%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
+ V G+ + C+ K S P + W +R + +
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAK-SKSPAYTLVW-----------TRLHNGKLPSRA 57
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
L I+ + D+G Y C+ SN D + +HV
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 5e-09
Identities = 20/146 (13%), Positives = 32/146 (21%), Gaps = 31/146 (21%)
Query: 47 GDEWTLHIKWAQKRDAGVYECQ-----LSTQPVRSFFVNLNVVV-PTAEILGSP-DLHVD 99
G L +K + + + C ++ L V+ P + P +
Sbjct: 139 GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWP 198
Query: 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159
E S C P + G
Sbjct: 199 ENSQQTPMCQA--WGNPLPELKCLK-------------------DGTFPLPIGESVTVTR 237
Query: 160 KDSGKYSCSPSNA---DVASVYVHVL 182
G Y C + V V+VL
Sbjct: 238 DLEGTYLCRARSTQGEVTREVTVNVL 263
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 2e-08
Identities = 18/164 (10%), Positives = 42/164 (25%), Gaps = 33/164 (20%)
Query: 31 YTYTSDQRFSAIHRREGD----EWTLHIKWAQKRDAGVYECQLSTQPV-RSFFVNLNVVV 85
+ DQR + D + ++ + C + + + +
Sbjct: 39 HLALGDQRLNPTVTYGNDSFSAKASVSVTAED-EGTQRLTCAVILGNQSQETLQTVTIYS 97
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
A + V EG+ + + C P + +
Sbjct: 98 FPAPNVILTKPEVSEGTEVTVKCEA--HPRAKVTLNGVPAQPLGP--------------- 140
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSN-------ADVASVYVHVL 182
+ LL++ + +SCS + + + VL
Sbjct: 141 ---RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 2e-04
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 83 VVVPTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVI 141
V+ T L SP + ++ + + CS+ P A + D+ ++ + G S
Sbjct: 1 VLPATPPQLVSPRV-LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDS-- 57
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV---ASVYVHVL 182
+ + AE + + + +C+ + V +
Sbjct: 58 -----FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 96
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 8e-09
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 16/90 (17%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V G + L C ++ + I W ++ + + +T + +
Sbjct: 12 SFLVHPGDLLQLRCRLR---DDVQSINWLRDGVQLA----------ESNRTRITGEEVEV 58
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
Q + DSG Y+C S+ D V+V
Sbjct: 59 QDSVPADSGLYACVTSSPSGSDTTYFSVNV 88
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 9e-09
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
EG+T L C + S P + W E + D R S+ + L I
Sbjct: 17 TKEASEGATATLQCEL--SKVAP--VEWKKGPETLR-DGGR--YSLKQDGTRCE---LQI 66
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHVL 182
+ D+G+YSC A++ V L
Sbjct: 67 HDLSVADAGEYSCMCGQERTSATLTVRAL 95
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 9e-09
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
DL V C + + WY + + S R IT L+I
Sbjct: 17 DLTVKAAEQAVFKCEVS---DEKVTGKWYKNGVEVR-PSKR-----ITISHVGRFHKLVI 67
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHVL 182
+D G Y+ P + S ++ L
Sbjct: 68 DDVRPEDEGDYTFVPDGYALSLSAKLNFL 96
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-08
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
++ +DEG + + P P + WY + + D +I + + + L+
Sbjct: 14 NMSIDEGRFCRMDFKVSGLPAPD--VSWYLNGRTVQSDDLH---KMIVSEKGLHS--LIF 66
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ D+G Y+C N +V + VL
Sbjct: 67 EVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-08
Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 18/171 (10%)
Query: 10 LLPTRVSWIRHRD-IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68
L TR+ W + + + + G + + I + ++ I + D G YEC
Sbjct: 25 LAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN-LSIVILALRPSDEGTYECV 83
Query: 69 LSTQPVRSFF------VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIF 121
+ +F V L+V D + + + CS PEP ++
Sbjct: 84 VLKYEKDAFKREHLAEVTLSVKADFPTPS-ISDFEIPTSNIRRIICSTSGGFPEP--HLS 140
Query: 122 WYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSN 171
W + E ++ ++ VS E +S L + + + C
Sbjct: 141 WLENGEELNAINTT--VSQDPETELYAVSSKLDFN---MTTNHSFMCLIKY 186
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 7e-04
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 98 VDEGSTINLTCSIKYSPEPPA--YIFWYHHDE-VISYDSSRG-------GVSVITEKGEV 147
+ L+C S E A I+W + V++ S ++ +
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 148 TTSYLLIQQAELKDSGKYSC 167
+ ++I D G Y C
Sbjct: 66 S---IVILALRPSDEGTYEC 82
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-08
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+L V+E T TC + P A + W + S + E + L I
Sbjct: 17 NLQVEEKGTAVFTCKTE---HPAATVTWRKGLLELR-ASGK--HQPSQEGLTLR---LTI 67
Query: 155 QQAELKDSGKYSC 167
E DS Y+C
Sbjct: 68 SALEKADSDTYTC 80
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-08
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
P VD+G + + +P + WY + + I S++ + KG L
Sbjct: 16 PAYQVDKGGRVRFVVELA---DPKLEVKWYKNGQEIR-PSTK---YIFEHKGCQRI--LF 66
Query: 154 IQQAELKDSGKYSCSPSNADV-ASVYV 179
I ++ D +Y + + ++V
Sbjct: 67 INNCQMTDDSEYYVTAGDEKCSTELFV 93
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-08
Identities = 11/88 (12%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
+ ++K +P+P + W+++ +++ +S + L +
Sbjct: 13 PTSDHHWCIPFTVKGNPKP--ALQWFYNGAILN-ESKYICTKIHVTNHTEYHGCLQLDNP 69
Query: 158 ELKDSGKYSCSPSNA---DVASVYVHVL 182
++G Y+ N D + H +
Sbjct: 70 THMNNGDYTLIAKNEYGKDEKQISAHFM 97
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-08
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 84 VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
VV E ++ + G++ L+C + + + WY + +S SS+ +
Sbjct: 9 VVFAKEQPAHREVQAEAGASATLSCEVA---QAQTEVTWYKDGKKLS-SSSK---VRVEA 61
Query: 144 KGEVTTSYLLIQQAELKDSGKYSC 167
G L++QQA ++G+YSC
Sbjct: 62 VGCTRR--LVVQQAGQAEAGEYSC 83
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 2e-08
Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 40/170 (23%)
Query: 42 IHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVD-- 99
I D+ ++ K G+Y+C+ S + V + +
Sbjct: 41 IGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKK 100
Query: 100 --------------------------EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS 133
G+T+ LTC P + I W H+D+ I D
Sbjct: 101 DDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP----QYPGSEILWQHNDKNIGGDE 156
Query: 134 SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA--DVASVYVHV 181
+ L + +EL+ SG Y C P + + A+ Y+++
Sbjct: 157 DDKNIGSDE------DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYL 200
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-08
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V GS + + W IS S++ + +G T L +
Sbjct: 17 SVEVAAGSPAVFEAETE---RAGVKVRWQRGGSDIS-ASNK---YGLATEGTRHT--LTV 67
Query: 155 QQAELKDSGKYSC 167
++ D G Y+
Sbjct: 68 REVGPADQGSYAV 80
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-08
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ V G T + + EP + W + ++ S I E G+ L++
Sbjct: 14 GVEVFVGETAHFEIELS---EPDVHGQWKLKGQPLA-ASPD---CEIIEDGKKHI--LIL 64
Query: 155 QQAELKDSGKYSCSPSNA 172
+L +G+ S +N
Sbjct: 65 HNCQLGMTGEVSFQAANT 82
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-08
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 24/102 (23%)
Query: 89 EILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
+I P + GST+ L C SP P + W+ ++ +++++ +
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVAVGSPIP--HYQWFKNELPLTHETKK------------ 50
Query: 148 TTSYLLIQQAELKDSGKYSCSPSN------ADVASVYVHVLN 183
++ +L+ G Y C N + + + LN
Sbjct: 51 ---LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 4e-08
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D+ V EGS C ++ P+P + W+ D + +S + ++ + L I
Sbjct: 50 DMEVVEGSAARFDCKVEGYPDP--EVMWFKDDNPVK-ESRH--FQIDYDEEGNCS--LTI 102
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVLNGEYTGWSESLGTQTK 198
+ D KY+C N+ + + V G E G + +
Sbjct: 103 SEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEEDE 149
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 8e-08
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR-------GGVSVITEKGEV 147
G ++ L C SP P I W+ + + S+ V + +
Sbjct: 30 SQQRWVGGSVELHCEAVGSPVP--EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQH 87
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA 172
S + I +D+G Y C SN
Sbjct: 88 AASTISIDTLVEEDTGTYECRASND 112
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-07
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 86 PTAEILGSP-DLHVDEGSTINLTCSIKYSP--EPPAYIFWYHHDEVISYDSSRGGVSV-- 140
P + P D V G +I + + + +PP + W+ V + +
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPV-VKWFKGKWVDLSSKVGQHLQLHD 61
Query: 141 -ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+V L I A+ +G Y C S D ++ + V
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-07
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPA-YIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY-- 151
V G I +K I W+ + + + + + Y
Sbjct: 16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 75
Query: 152 -LLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ I +A+ +G Y C + D S + V
Sbjct: 76 EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 109
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-07
Identities = 22/131 (16%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 43 HRREGDEWTLHIKWAQKRDAGVYECQLSTQPV---RSFFVNLNVVVP--TAEILGSPDLH 97
R D+ L I ++ AG Y C + S + L + P
Sbjct: 45 SSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPA 104
Query: 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157
V G + L C + Y + Y + + I
Sbjct: 105 VSSGGDVTLQCQ---TRYGFDQFALYKEGDPAPYKNPERW----------YRASFPIITV 151
Query: 158 ELKDSGKYSCS 168
SG Y C
Sbjct: 152 TAAHSGTYRCY 162
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-07
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ + LTC + P A + W E + +S ++ ++ V L++
Sbjct: 22 YVAAVRLERVVLTCELC---RPWAEVRWTKDGEEVV-ESPA---LLLQKEDTVRR--LVL 72
Query: 155 QQAELKDSGKYSCSPSNADV-ASVYVHV 181
+L+DSG+Y C + +V V
Sbjct: 73 PAVQLEDSGEYLCEIDDESASFTVTVTE 100
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-07
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 20/90 (22%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V G T+ LTC + P P I W + S L++
Sbjct: 19 GGAVAPGGTVTLTCEVPAQPSP--QIHWMKDGVPLPLPPS---------------PVLIL 61
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ +D G YSC +++ S V +
Sbjct: 62 PEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-07
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
L G ++ LTC PE A + W SR L
Sbjct: 13 RGVLTSLPGDSVTLTCPGV-EPEDNATVHWVLRKPAAGSHPSRW---------AGMGRRL 62
Query: 153 LIQQAELKDSGKYSCSPSNADVASVYVHV 181
L++ +L DSG YSC + +V++ V
Sbjct: 63 LLRSVQLHDSGNYSCYRAGRPAGTVHLLV 91
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-07
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 15/127 (11%)
Query: 51 TLHIKWAQKRDAGVYECQLS----TQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINL 106
TL + A +AG Y+ + V S + I +V + + L
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVEL 112
Query: 107 TCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166
++K+S + + Y S+G + T T + IQ+ +G Y+
Sbjct: 113 HATVKFSGGKTPADNY-----ELHYSWSKGEDVIDT------TQDITIQEFTADKNGVYT 161
Query: 167 CSPSNAD 173
Sbjct: 162 VKVWGES 168
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 1e-06
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 13/134 (9%)
Query: 51 TLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAEIL--GSPDLHVDEGSTINLT 107
+ I+ GVY ++ + + + +++ T + V G+ I+L
Sbjct: 146 DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLN 205
Query: 108 CSIKYS--------PEPPAYIFWYHHDE-VISYDSSRGGVSVITEKGEVTTS-YLLIQQA 157
+ P WY E +S V E +T +L + A
Sbjct: 206 YVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESA 265
Query: 158 ELKDSGKYSCSPSN 171
D+ K+ C
Sbjct: 266 TYDDTAKFWCVAKL 279
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 8e-07
Identities = 19/130 (14%), Positives = 31/130 (23%), Gaps = 18/130 (13%)
Query: 47 GDEWTLHIKWAQKRDAGVYECQLSTQPV---RSFFVNLNV--VVPTAEILGSPDLHVDEG 101
++ +I R AG Y C + S ++L V + T + P V G
Sbjct: 57 INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISG 116
Query: 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKD 161
+ C + G + +
Sbjct: 117 EKVTFYCR---LDTATSMFLLLKEGRSSHVQRGYGK----------VQAEFPLGPVTTAH 163
Query: 162 SGKYSCSPSN 171
G Y C S
Sbjct: 164 RGTYRCFGSY 173
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 9e-07
Identities = 22/160 (13%), Positives = 44/160 (27%), Gaps = 27/160 (16%)
Query: 13 TRVSWIRHRD-IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
V W R + + F + L IK + D+G Y + +
Sbjct: 28 DEVRWERGSTLVAEFKRKMKPFLKSGAFEIL-----ANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 72 QPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131
+ +N + + E++ P ++ E S LTC + + + Y E +
Sbjct: 83 T-NGTRILNKALDLRILEMVSKPMIYW-ECSNATLTCEVLEGTDVE--LKLYQGKEHLR- 137
Query: 132 DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+ + + C N
Sbjct: 138 ----------------SLRQKTMSYQWTNLRAPFKCKAVN 161
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-05
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY-LLIQ 155
G INL + + W +++ + + + E+ + L I+
Sbjct: 7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 66
Query: 156 QAELKDSGKYSCSPSNADVASVYVHVLN 183
DSG Y+ + + + + L+
Sbjct: 67 NLTRDDSGTYNVTVYSTNGTRILNKALD 94
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-06
Identities = 19/131 (14%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 46 EGDEWTLHIKWAQKRDAGVYECQLSTQPV---RSFFVNLNV--VVPTAEILGSPDLHVDE 100
++ +I R AG Y C + S ++L V + T + P V
Sbjct: 53 RINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVIS 112
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160
G + C + G + +
Sbjct: 113 GEKVTFYCR---LDTATSMFLLLKEGRSSHVQRGYGK----------VQAEFPLGPVTTA 159
Query: 161 DSGKYSCSPSN 171
G Y C S
Sbjct: 160 HRGTYRCFGSY 170
|
| >3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B* Length = 120 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-06
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPA--YIFWYHHD-----EVISYDSS---RGGVSVIT 142
P++ EGS+ L CS S A + W+ + EV + R +
Sbjct: 14 PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASS 73
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSC 167
+ L I+ D+ Y C
Sbjct: 74 RFLHDHQAELHIRDVRGHDASIYVC 98
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-06
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V EG + N C + S P + W+ D + S + + L I
Sbjct: 491 GTEVGEGQSANFYCRVIASSPP--VVTWHKDDRELK-QSVK--YMKRYNGNDYG---LTI 542
Query: 155 QQAELKDSGKYSCSPSN 171
+ + D G+Y+ N
Sbjct: 543 NRVKGDDKGEYTVRAKN 559
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 2e-06
Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 19/175 (10%)
Query: 9 GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEW-------TLHIKWAQKRD 61
+ ++W V + + D + + W +L + Q +
Sbjct: 34 NITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEE 93
Query: 62 AGVYECQLSTQPVRSF-FVNLNVVV-PTAEILGSPDLHVDEGSTINLTCSI-KYSPEPPA 118
AG Y C++ P+++ V L VV P + + D + + C + PE
Sbjct: 94 AGEYRCEVVVTPLKAQGTVQLEVVASPASRL--LLDQVGMKENEDKYMCESSGFYPE-AI 150
Query: 119 YIFWYHHDEVISYDSSRGGVSVITEK---GEVT---TSYLLIQQAELKDSGKYSC 167
I W + + + + T TS L + ++ Y C
Sbjct: 151 NITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQC 205
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-06
Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 16/141 (11%)
Query: 36 DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP------VRSFFVNLNV--VVPT 87
D+ I + + ++ AG Y C+ S S V + V
Sbjct: 60 DRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRK 119
Query: 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147
+L P V G + L C S + F + G V
Sbjct: 120 PSLLAHPGPLVKSGERVILQCW---SDIMFEHFFLHKEGISKDPSRLVG-----QIHDGV 171
Query: 148 TTSYLLIQQAELKDSGKYSCS 168
+ + I L +G Y C
Sbjct: 172 SKANFSIGPMMLALAGTYRCY 192
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} Length = 259 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-06
Identities = 33/195 (16%), Positives = 57/195 (29%), Gaps = 44/195 (22%)
Query: 15 VSWIRHRD-------IHILTVGSYTYTSD---QRFSAIHRREGDEWTLHIKWAQKRDAGV 64
+ W H++ ++ + S + + ++ + D+GV
Sbjct: 34 IHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGV 93
Query: 65 YECQLSTQPVRS--FFVNLNVVVPTAEILG-------------------SPDLHVDEGST 103
Y C Q F ++VV + + +
Sbjct: 94 YYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKA 153
Query: 104 INLTCSIKYSPEPPAYIFWYHHDE------VISYDSSR-----GGVSVITEKGEVTTSYL 152
+ L C + S YIFWY +I S G S + K + L
Sbjct: 154 VTLNCLYETSWWSY-YIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYS-VNFKKAAKSVAL 211
Query: 153 LIQQAELKDSGKYSC 167
I +L+DS KY C
Sbjct: 212 TISALQLEDSAKYFC 226
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} Length = 259 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-05
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 17/89 (19%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSRGGVSV------- 140
+ GS+ +TC + YI WY H E ++ YDS V +
Sbjct: 10 KSVIRQTGSSAEITC--DLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPG 67
Query: 141 --ITEKGEVTTSYLLIQQAELKDSGKYSC 167
T ++++ DSG Y C
Sbjct: 68 KYDTYGSTRKNLRMILRNLIENDSGVYYC 96
|
| >2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A Length = 200 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-06
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSR----GGVSVITE 143
++ EG+ + + C+ Y +FWY + G S
Sbjct: 7 TEMTATEGAIVQINCT--YQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLS 64
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVH 180
+ + SYLL+++ ++KDS Y C+ + + +
Sbjct: 65 RSK-GYSYLLLKELQMKDSASYLCAVQASGGSYIPTF 100
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 4e-06
Identities = 25/171 (14%), Positives = 47/171 (27%), Gaps = 19/171 (11%)
Query: 12 PTRVSWIRHRD---IHILTVG-SYTYTSDQRFSAIHRREGDE-----WTLHIKWAQKRDA 62
+ W+ +++ G + D L I D+
Sbjct: 36 TMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDS 95
Query: 63 GVYECQLSTQPV-RSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYI 120
G Y C V L V +++ D+ + I+L C + P+P I
Sbjct: 96 GKYLCYFQDGDFYEKALVELKVAALGSDL--HVDVKGYKDGGIHLECRSTGWYPQP--QI 151
Query: 121 FWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
W ++ V+ V S ++ SC+ +
Sbjct: 152 QWSNNKGENIPTVEAPVVADGVGLYAVAASVIM----RGSSGEGVSCTIRS 198
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 5e-06
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 96 LHVDEGSTINLTC-SIKYSPEPPAYIFWYHHDEVISYDS-SRGGVSVITEKGEVTTSYLL 153
+ + ++ C +P + W + V++ S V L
Sbjct: 7 VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 66
Query: 154 IQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ Q ++G Y+ +N AS+ +
Sbjct: 67 LNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98
|
| >3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 5e-06
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSRGGVSV-----ITE 143
LHV EG + N TCS + + WY + E + + G T
Sbjct: 8 QSLHVQEGDSTNFTCS--FPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATL 65
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCS 168
+ SYL I+ ++ +DS Y C+
Sbjct: 66 NTKEGYSYLYIKGSQPEDSATYLCA 90
|
| >2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A Length = 203 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 5e-06
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD------EVISYDSSR-----GGVSVIT 142
L V EG + L CS ++ + W+ D ++ SS+ G ++
Sbjct: 8 AALSVPEGENLVLNCS--FTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASL 65
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCS 168
+K S L I ++ DS Y C+
Sbjct: 66 DKSS-GRSTLYIAASQPGDSATYLCA 90
|
| >2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C* Length = 210 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 7e-06
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 14/86 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD------EVISYDSS-----RGGVSVIT 142
L + EG L C+ Y+ P + + WY D + S G +
Sbjct: 11 QSLIILEGKNCTLQCN--YTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL 68
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCS 168
+ S L I ++L DS Y C
Sbjct: 69 DADT-KQSSLHITASQLSDSASYICV 93
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 7e-06
Identities = 21/148 (14%), Positives = 35/148 (23%), Gaps = 23/148 (15%)
Query: 29 GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV---RSFFVNLNVVV 85
S Q ++ I + AG Y C + S + L +
Sbjct: 41 ESPAPWDRQ----NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTG 96
Query: 86 P--TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY---HHDEVISYDSSRGGVSV 140
+ P V G ++ L C S P ++ S G
Sbjct: 97 AYSKPTLSALPSPLVTSGKSVTLLCQ---SRSPMDTFLLCKERAAHPLLCLRSEHG---- 149
Query: 141 ITEKGEVTTSYLLIQQAELKDSGKYSCS 168
+ + + G Y C
Sbjct: 150 ----AQQHQAEFPMSPVTSVHGGTYRCF 173
|
| >2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-06
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 13 TRVSWIRHRDIHILTV--GSYTYTSDQRFSAIHRREGDE--WTLHIKWAQKRDAGVYECQ 68
R++W+ ++ IL S + F R +E LHI +K D G Y +
Sbjct: 34 RRITWLHTKNQKILEYNYNSTKTIFESEFK--GRVYLEENNGALHISNVRKEDKGTYYMR 91
Query: 69 LSTQPVRSFFVNLNVVVP 86
+ + + L V P
Sbjct: 92 VLRETENELKITLEVFDP 109
|
| >2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1 Length = 142 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-05
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSS------RGGVSVI 141
+ V E +T+ + C + ++FWY +I DS G S+
Sbjct: 8 TSISVMEKTTVTMDCVYETQDSSY-FLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLN 66
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSC 167
+K + ++ L+I +++DS Y C
Sbjct: 67 FQKPK-SSIGLIITATQIEDSAVYFC 91
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-05
Identities = 17/133 (12%), Positives = 27/133 (20%), Gaps = 13/133 (9%)
Query: 42 IHRREGDEWTLHIKWAQKRDAGVYECQLSTQP----VRSFFVNLNVVV--PTAEILGSPD 95
I + + I G Y C + S + L V + P
Sbjct: 50 IPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS 109
Query: 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155
V+ G + L C S E + + +
Sbjct: 110 PVVNSGGNVTLQCD---SQVAFDGFILCKEGEDEHPQCLNSQPHA----RGSSRAIFSVG 162
Query: 156 QAELKDSGKYSCS 168
Y C
Sbjct: 163 PVSPSRRWWYRCY 175
|
| >1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A* Length = 116 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-05
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSS------RGGVSVI 141
+ V E +T+ + C + ++FWY +I DS G S+
Sbjct: 8 TSISVMEKTTVTMDCVYETQDSSY-FLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLN 66
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSC 167
+K + ++ L+I +++DS Y C
Sbjct: 67 FQKPK-SSIGLIITATQIEDSAVYFC 91
|
| >4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ... Length = 208 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-05
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSR-----GGVSVITE 143
L V EG +L C+ S Y +WY + + S G +
Sbjct: 10 ESLSVPEGGMASLNCT--SSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLN 67
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPS 170
K L I+ ++ DS Y C+ S
Sbjct: 68 KAS-LHVSLHIRDSQPSDSALYFCAAS 93
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-05
Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 17/127 (13%)
Query: 47 GDEWTLHIKWAQKRDAGVYECQLSTQPVRS-----FFVNLNVVVPTAEILGSPDLHVDEG 101
+ I AG Y+CQ R + + + + L + G
Sbjct: 61 ETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPG 120
Query: 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKD 161
I+LTCS S P F + G +S+ + + + +L
Sbjct: 121 ENISLTCS---SAHIPFDRFSLAKE---------GELSLPQHQSGEHPANFSLGPVDLNV 168
Query: 162 SGKYSCS 168
SG Y C
Sbjct: 169 SGIYRCY 175
|
| >2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ... Length = 229 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-05
Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 14/86 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSR-----GGVSVIT 142
L V +G L C+ YS P ++ WY D + + G S
Sbjct: 9 QSLVVRQGENCVLQCN--YSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATL 66
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCS 168
+K S L I L D+ Y C
Sbjct: 67 DKDA-KHSTLHITATLLDDTATYFCV 91
|
| >3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus} Length = 229 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-05
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE---------VISYDSSRGGVSVITEK 144
P L + EG+ L C+ +S + W+ + + G +
Sbjct: 9 PALSLYEGADSGLRCN--FSTTMK-SVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNS 65
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPS 170
E S L I+ A+L+DSG Y C+
Sbjct: 66 KE-RYSTLHIKDAQLEDSGTYFCAAE 90
|
| >1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A* Length = 194 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-05
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSS-----RGGVSVIT 142
+ + EG + L C+ Y ++FWY ++ + G
Sbjct: 9 GLVTLTEGLPVMLNCT--YQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATL 66
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172
K ++ +L A+L DS Y C+ A
Sbjct: 67 HKSS-SSFHLQKSSAQLSDSALYYCALFLA 95
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-05
Identities = 15/128 (11%), Positives = 30/128 (23%), Gaps = 12/128 (9%)
Query: 46 EGDEWTLHIKWAQKRDAGVYECQLSTQPV---RSFFVNLNV--VVPTAEILGSPDLHVDE 100
++ I + AG Y C + S + L V + P V
Sbjct: 54 PKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTS 113
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160
G + L C + + F + + + + + +
Sbjct: 114 GENVTLQCGSRLRFDR----FILTEEGDHKLSWTLDSQLTPSGQFQAL---FPVGPVTPS 166
Query: 161 DSGKYSCS 168
C
Sbjct: 167 HRWMLRCY 174
|
| >3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 Length = 185 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-05
Identities = 22/88 (25%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSSRGGVS----VITE 143
L V EG T L CS Y Y WYH +I+ I
Sbjct: 8 QSLTVWEGETAILNCS--YEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFF 65
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSN 171
L I ++ DS Y C+ S+
Sbjct: 66 NKREKKFSLHIADSQPGDSATYFCAASD 93
|
| >1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A Length = 206 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-05
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPA-YIFWYHHDE------VISYDSSR--GGVSVITEK 144
+ +E ++L C+ +S YI WY VI +S ++ +
Sbjct: 7 NSMESNEEEPVHLPCN--HSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIA 64
Query: 145 GEVTTSYLLIQQAELKDSGKYSC 167
+ +S L++ +A L+D+ Y C
Sbjct: 65 EDRKSSTLILHRATLRDAAVYYC 87
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-05
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGV-SVITEKGEVTTSYLL 153
DL V +G L C + P P I WY E + D ++ G + ++
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTP--TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIV 75
Query: 154 IQQAELKDSGKYSCSPSN 171
+ D G Y C N
Sbjct: 76 HGRKSRPDEGVYVCVARN 93
|
| >3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A Length = 200 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-05
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSRGGVSV-----ITE 143
+ + E + + C+ YS +FWY +++ ++ T
Sbjct: 8 GQVTLSENDFLFINCT--YSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATY 65
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSN 171
T+ +L + DS Y C+ ++
Sbjct: 66 DKGTTSFHLQKTSVQEIDSAVYYCAANS 93
|
| >1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1 Length = 207 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-05
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD------EVISYDSSR-----GGVSVIT 142
L + EG + CS K S + WY + +I S+ G + V
Sbjct: 9 QALSIQEGENATMNCSYKTSIN---NLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTL 65
Query: 143 EKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVH 180
+ + +S LLI + D+ Y C+ Y+
Sbjct: 66 DTSK-KSSSLLITASRAADTASYFCATDTTSGTYKYIF 102
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 3e-05
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
P + V G++ LTC + + A + W D+S G V + S L
Sbjct: 14 EPVVAVALGASRQLTCRLA-CADRGASVQWR------GLDTSLGAVQS-----DTGRSVL 61
Query: 153 LIQQAELKDSGKYSCSPSNADV---ASVYVHV 181
++ A L +G C S +V + V
Sbjct: 62 TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
|
| >3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A Length = 205 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-05
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE---------VISYDSSRGGVSVITEK 144
L + EG+ L C+ + + W+ + + S G + +
Sbjct: 11 SALSLHEGTGSALRCNFTTTMR---AVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDS 67
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSN 171
E S L I+ A+L+DSG Y C+
Sbjct: 68 KE-RYSTLHIRDAQLEDSGTYFCAAEA 93
|
| >2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-05
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE--VISYDSSRGGVSVITEKGEVTTS 150
+ V GS + L S PE + W++ + ++ +DS + KG V
Sbjct: 11 LVHMTVVSGSNVTLNISES-LPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLD 69
Query: 151 Y----LLIQQAELKDSGKYSC----SPSNADVASVYVHVL 182
L I + + +D+ Y N + + VL
Sbjct: 70 PQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVL 109
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 Length = 207 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 5e-05
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSSR----GGVSVITEK 144
L + EG+ L C+ + + W+ + + Y +S G + +
Sbjct: 9 SALSLHEGTDSALRCNFTTTM---RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS 65
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHVLNGEYTG 188
E S L I+ A+L+DSG Y C+ ++ Y + G
Sbjct: 66 KERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFG 109
|
| >3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D Length = 226 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 5e-05
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDS------SRGGVSVI 141
+ V EG+++ L C YS P Y+FWY ++ Y S G
Sbjct: 17 ARVTVSEGASLQLRCKYSYSATP--YLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAE 74
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
K + ++ +L DS Y C+ S
Sbjct: 75 FSKSD-SSFHLRKASVHWSDSAVYFCAVSA 103
|
| >1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B Length = 113 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 7e-05
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYDSS----RGGVSVITEK 144
L + EG+ L C+ ++ + W+ + + Y +S G + +
Sbjct: 9 SALSLHEGTDSALRCN--FTTTMR-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS 65
Query: 145 GEVTTSYLLIQQAELKDSGKYSC 167
S L I+ A+L+DSG Y C
Sbjct: 66 ERARYSTLHIRDAQLEDSGTYFC 88
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 7e-05
Identities = 22/145 (15%), Positives = 33/145 (22%), Gaps = 18/145 (12%)
Query: 32 TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP------VRSFFVNLNV-- 83
+ R H + I + AG Y C S S +++ +
Sbjct: 45 MFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIG 104
Query: 84 VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
+ + P V G + L+CS S E G
Sbjct: 105 LYEKPSLSAQPGPTVLAGENVTLSCS---SRSSYDMYHLSREGEAHERRLPAG------- 154
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCS 168
T G Y C
Sbjct: 155 PKVNGTFQADFPLGPATHGGTYRCF 179
|
| >1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105 | Back alignment and structure |
|---|
Score = 39.4 bits (91), Expect = 9e-05
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160
G+T+ LTC E I W H+D+ I D G L + +EL+
Sbjct: 21 GTTVILTCPQYPGSE----ILWQHNDKNIGGDEDDK------NIGSDEDHLSLKEFSELE 70
Query: 161 DSGKYSCSPSNA--DVASVYVHV 181
SG Y C P + + A+ Y+++
Sbjct: 71 QSGYYVCYPRGSKPEDANFYLYL 93
|
| >1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A* Length = 119 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 1e-04
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 17/90 (18%)
Query: 94 PDLHVDEGSTINLTCSIKYSPE----PPAYIFWY------------HHDEVISYDSSRGG 137
++ GS + + C Y + WY D + RG
Sbjct: 8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGR 67
Query: 138 VSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
++ LL++ + +DSG Y+
Sbjct: 68 AELMGNMDH-KVCNLLLKDLKPEDSGTYNF 96
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 1e-04
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 9/103 (8%)
Query: 84 VVPTAEIL-GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT 142
TA ++ G D+ V +G + + S W+ + E + + G V
Sbjct: 5 SSGTARLVAGLEDVQVYDGEDAVFSLDL--STIIQ--GTWFLNGEELKSNEPEGQVEPGA 60
Query: 143 EKGEV----TTSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181
+ + L++ + +DSG S + +
Sbjct: 61 LRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAALTI 103
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} Length = 270 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 2e-04
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 19/148 (12%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF------------VNLNVVV 85
RFSA +L I+ ++ D+ +Y C S + NV
Sbjct: 90 RFSA-ECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFP 148
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
P + + + L C + W+ + + + + +
Sbjct: 149 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPA 208
Query: 146 EV-----TTSYLLIQQAELKDSGK-YSC 167
+S L + ++ + C
Sbjct: 209 LNDSRYALSSRLRVSATFWQNPRNHFRC 236
|
| >2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D Length = 211 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 2e-04
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE------VISYDSS------RGGVSVI 141
++ V E + L C + Y+FWY +I +S G S
Sbjct: 11 TEISVVEKEDVTLDCVYETRDTTY-YLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWN 69
Query: 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171
+K ++ I +++ DS Y C+ S
Sbjct: 70 FQKST-SSFNFTITASQVVDSAVYFCALSG 98
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 37.9 bits (87), Expect = 4e-04
Identities = 21/93 (22%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Query: 86 PTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAY-IFWY--HHDEVISYDSSRGGVSVI 141
PT L P + V+ G + + P I W+ E+ S +R
Sbjct: 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKES 70
Query: 142 TEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173
V T L I + L D G Y D
Sbjct: 71 HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKD 103
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A Length = 240 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 4e-04
Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 16/144 (11%)
Query: 38 RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-----------TQPVRSFFVNLNVVVP 86
RFS + + +++ + D+ +Y C S + NV P
Sbjct: 64 RFSV-QQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPP 122
Query: 87 TAEILGSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
+ + L C + P+ + W+ + + + S +
Sbjct: 123 KVSLFEPSKAEIANKQKATLVCLARGFFPDHVE-LSWWVNGKEVHSGVSTDPQAYKESNY 181
Query: 146 EVT-TSYLLIQQAELKDSGK-YSC 167
+ +S L + + + C
Sbjct: 182 SYSLSSRLRVSATFWHNPRNHFRC 205
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A Length = 238 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 5e-04
Identities = 34/174 (19%), Positives = 50/174 (28%), Gaps = 32/174 (18%)
Query: 23 IHILTVGSYTYTS-DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRS---FF 78
+ GS + A R + ++L ++ A VY C + FF
Sbjct: 46 HYSYGAGSTEKGDIPDGYKAS-RPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFF 104
Query: 79 VNLNVVVPT--------------AEILGSPD-LHVDEGSTINLTCSIKYSPEPPAYIFWY 123
+ + ++ SP L V EG T L CS Y Y WY
Sbjct: 105 GHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCS--YENSAFDYFPWY 162
Query: 124 HHD-----EVISY-----DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167
++ D G I L I ++ DS Y C
Sbjct: 163 QQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFC 216
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 38.8 bits (90), Expect = 6e-04
Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 19/168 (11%)
Query: 15 VSWIRHRD-----IHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69
+ W R I+ G + + S +RE ++++ I DAG Y C
Sbjct: 36 IQWFRGAGPARELIYNQKEGHFPRVTTVSEST--KRENMDFSISISNITPADAGTYYCVK 93
Query: 70 STQPVRSFF-------VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIF 121
+ P+A ++ P T++ TC +SP
Sbjct: 94 FRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLK- 152
Query: 122 WYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCS 168
W+ + +S + V + E + S + + C
Sbjct: 153 WFKNGNELS--DFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICE 198
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214 | Back alignment and structure |
|---|
Score = 38.3 bits (89), Expect = 7e-04
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 11/127 (8%)
Query: 51 TLHIKWAQKRDAGVYECQ-----LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTIN 105
L + C T + + N P +L P + +
Sbjct: 67 VLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVT 126
Query: 106 LTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTT----SYLLIQQAELK 160
LTC + +SP + W + + + S TT S L + + K
Sbjct: 127 LTCLARGFSP-KDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK 185
Query: 161 DSGKYSC 167
+SC
Sbjct: 186 KGDTFSC 192
|
| >2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109 | Back alignment and structure |
|---|
Score = 36.8 bits (85), Expect = 8e-04
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 20/90 (22%)
Query: 96 LHVDEGSTINLTCSIKYSPEP-PAYIFWY--------HHDEVISYD--------SSRGGV 138
V+ G L CS + W +E++ D SSR +
Sbjct: 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQL 63
Query: 139 SVITEKGEVTTSYLLIQQAELKDSGKYSCS 168
KG+V+ L+I+ L D G Y C
Sbjct: 64 KGDLNKGDVS---LIIKNVTLDDHGTYCCR 90
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 37.9 bits (87), Expect = 9e-04
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 18/73 (24%)
Query: 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160
G+++ LTC + + W + + + + +L +E++
Sbjct: 14 GTSVELTCPLDSDEN----LKWEKNGQELPQKHDK--------------HLVLQDFSEVE 55
Query: 161 DSGKYSCSPSNAD 173
DSG Y C ++
Sbjct: 56 DSGYYVCYTPASN 68
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 212 | |||
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.95 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.92 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.92 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.92 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.91 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.91 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.91 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.91 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.91 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 99.91 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.9 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.9 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 99.9 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 99.9 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.9 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.9 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.9 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.9 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.89 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 99.89 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.89 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 99.89 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.89 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.89 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.88 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.88 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 99.88 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 99.88 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.88 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.88 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.88 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.88 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.88 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.88 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 99.88 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.88 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.88 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.88 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.88 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.88 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.88 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.88 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.88 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.87 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.87 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.87 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.87 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.87 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 99.87 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.87 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.87 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.87 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.87 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.87 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.87 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 99.87 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.87 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.87 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 99.87 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.87 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.87 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.87 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.86 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.86 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.86 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.86 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 99.86 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.86 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.86 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.86 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.86 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.86 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.86 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.86 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.86 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.86 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.86 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.86 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.86 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.86 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.86 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.85 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.85 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.85 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.85 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.85 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.85 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.85 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.85 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.85 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.85 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.85 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.85 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.85 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.85 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.85 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.85 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.85 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.85 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.85 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.84 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 99.84 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.84 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.84 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.84 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 99.84 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.84 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 99.84 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.84 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.84 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.84 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.84 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 99.83 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.83 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.83 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.83 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.83 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.83 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.83 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.83 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.83 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.83 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.83 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.83 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.83 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.83 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.83 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.82 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.82 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.82 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.82 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.82 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.82 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.82 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.82 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.82 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.82 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.82 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.82 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.81 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.81 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.81 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.81 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.81 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.81 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.81 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.81 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 99.81 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.81 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.81 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 99.8 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.8 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.8 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.8 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.8 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.8 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 99.8 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.8 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.8 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.8 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.8 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.8 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.8 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.8 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.8 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.8 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.8 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.8 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.79 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.79 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.79 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.79 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.79 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 99.79 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.79 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.79 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 99.79 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.79 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.79 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.79 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.78 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 99.78 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.78 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 99.78 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.78 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 99.78 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.77 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 99.77 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.77 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.77 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.77 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.77 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.77 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.76 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.76 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.76 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.76 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.76 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.76 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.76 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 99.76 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.76 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 99.76 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.75 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.75 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.75 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.75 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.75 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.75 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.75 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.75 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.74 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.74 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 99.74 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.73 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 99.73 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.73 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.73 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 99.72 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.72 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.72 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.72 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 99.72 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 99.71 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.71 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 99.71 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.7 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.7 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 99.69 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.69 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.69 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.69 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.69 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 99.68 | |
| 3u1s_H | 267 | FAB PGT145 heavy chain; IGG, broadly neutralizing | 99.68 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.66 | |
| 1hxm_A | 229 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.65 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.64 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.64 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.63 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.62 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.62 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 99.61 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.6 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.59 | |
| 4f9p_D | 254 | 103.2 anti-BTN3A1 antibody fragment; B7 superfamil | 99.59 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.56 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.54 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.53 | |
| 3f8u_B | 401 | Tapasin; endoplasmic reticulum, glycoprotein, immu | 99.53 | |
| 4f9l_D | 259 | 20.1 anti-BTN3A1 antibody fragment; B7 superfamily | 99.51 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.49 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.49 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.49 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.47 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.47 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.46 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.46 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.46 | |
| 3m45_A | 108 | Cell adhesion molecule 2; IG fold, dimer, disulfid | 99.46 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.45 | |
| 3rbg_A | 124 | Cytotoxic and regulatory T-cell molecule; IGV, crt | 99.44 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.44 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.43 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.43 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.43 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.42 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.42 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.42 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.42 | |
| 1iam_A | 185 | ICAM-1, CD54, intercellular adhesion molecule-1; r | 99.41 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.41 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.4 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.4 | |
| 2eys_A | 210 | NKT15; natural killer T cell receptor, immune syst | 99.4 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.4 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.4 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.39 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.38 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.37 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.37 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.37 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.37 | |
| 2bnu_A | 203 | TCR alpha chain, T-cell receptor alpha chain C reg | 99.37 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.37 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.37 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.36 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.35 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.35 | |
| 1ntl_A | 551 | CRRY-IG; immunology, complement, glycoprotein, SCR | 99.35 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.35 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.35 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.34 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.34 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.33 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.33 | |
| 3s35_X | 122 | Vascular endothelial growth factor receptor 2; ant | 99.33 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.33 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.33 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.33 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.33 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.32 | |
| 2cry_A | 122 | KIN of IRRE-like protein 3; IG fold, KIN of irregu | 99.32 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.32 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.32 | |
| 2cpc_A | 113 | KIAA0657 protein; immunoglobulin domain, IG domain | 99.32 | |
| 2nw2_A | 200 | ELS4 TCR alpha chain; T cell receptor, immune syst | 99.32 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.32 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.32 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.32 | |
| 1z9m_A | 145 | GAPA225; nectin-like, IG-like domain, V domain, ce | 99.31 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.31 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.31 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.31 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.31 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.31 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.3 | |
| 3rgv_A | 200 | YAE62 TCR A chain; TCR, MHC, MHC class I, immune s | 99.3 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.3 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.3 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.3 | |
| 3m45_A | 108 | Cell adhesion molecule 2; IG fold, dimer, disulfid | 99.3 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.3 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.3 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.29 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.29 | |
| 2e6q_A | 112 | Obscurin-like protein 1; IG-like domain, structura | 99.29 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.29 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.29 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.28 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.28 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.28 | |
| 2dlt_A | 106 | Myosin binding protein C, fast-type; IG-like domai | 99.28 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.28 | |
| 3so5_A | 112 | LIG-3, leucine-rich repeats and immunoglobulin-lik | 99.28 | |
| 2ak4_D | 211 | SB27 T cell receptor alpha chain; bulged epitopes, | 99.28 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.27 | |
| 3bn3_B | 196 | ICAM-5, intercellular adhesion molecule 5, telence | 99.27 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.27 | |
| 1wwc_A | 118 | Protein (NT-3 growth factor receptor TRKC); TRK re | 99.27 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.27 | |
| 2v9t_A | 117 | Roundabout homolog 1; structural protein-receptor | 99.26 | |
| 1kgc_D | 206 | T-cell receptor alpha chain; LC13 clone, immune sy | 99.26 | |
| 2k1m_A | 95 | Myosin-binding protein C, cardiac-type; IG-I domai | 99.26 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.26 | |
| 3mbe_C | 229 | I-AG7; T cell receptor, histocompatability antigen | 99.25 | |
| 4ei6_A | 208 | Valpha1 XV19 type II natural killer T cell recept | 99.25 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.24 | |
| 2cpc_A | 113 | KIAA0657 protein; immunoglobulin domain, IG domain | 99.24 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.24 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.24 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.23 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.23 | |
| 3tjh_C | 226 | 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, | 99.23 | |
| 3c6l_A | 185 | TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus | 98.87 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.23 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.22 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.22 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.22 | |
| 2cr6_A | 115 | KIAA1556 protein, obscurin; IG-fold, immunoglobuli | 99.22 | |
| 1wwc_A | 118 | Protein (NT-3 growth factor receptor TRKC); TRK re | 99.22 | |
| 1pd6_A | 104 | Cardiac MYBP-C;, myosin-binding protein C, cardiac | 99.21 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.21 | |
| 1oga_D | 215 | T-cell receptor alpha chain V region, beta-2-micro | 99.2 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.2 | |
| 3gsn_A | 199 | RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human | 99.2 | |
| 2ens_A | 96 | Advanced glycosylation END product-specific recept | 99.2 | |
| 2dku_A | 103 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.2 | |
| 2k1m_A | 95 | Myosin-binding protein C, cardiac-type; IG-I domai | 99.19 | |
| 3qr2_A | 137 | Basigin; CD147, EMMPRIN, immunoglobulin-like domai | 99.19 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.18 | |
| 1gl4_B | 98 | Basement membrane-specific heparan sulfate proteog | 99.17 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.17 | |
| 3s35_X | 122 | Vascular endothelial growth factor receptor 2; ant | 99.17 | |
| 2cr6_A | 115 | KIAA1556 protein, obscurin; IG-fold, immunoglobuli | 99.17 | |
| 2dlt_A | 106 | Myosin binding protein C, fast-type; IG-like domai | 99.16 | |
| 2e7b_A | 103 | Obscurin; IG-like domain, structural genomics, NPP | 99.16 | |
| 1zox_A | 113 | CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I | 99.16 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.15 | |
| 2dm7_A | 108 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.15 | |
| 2q86_A | 229 | Valpha14 TCR; INKT cells, TCR, glycolipid recognit | 99.15 | |
| 2dm7_A | 108 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.14 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.14 | |
| 1ymm_D | 207 | T cell receptor alpha chain; protein-protein compl | 99.14 | |
| 2cr3_A | 99 | Basic fibroblast growth factor receptor 1; IG fold | 99.14 | |
| 4hwu_A | 95 | Fibroblast growth factor receptor 2; FGFR2, KGFR, | 99.13 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.12 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.12 | |
| 2e7b_A | 103 | Obscurin; IG-like domain, structural genomics, NPP | 99.12 | |
| 2eo1_A | 102 | OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024 | 99.12 | |
| 2e6q_A | 112 | Obscurin-like protein 1; IG-like domain, structura | 99.12 | |
| 2cr3_A | 99 | Basic fibroblast growth factor receptor 1; IG fold | 99.12 | |
| 3rbg_A | 124 | Cytotoxic and regulatory T-cell molecule; IGV, crt | 99.11 | |
| 1pd6_A | 104 | Cardiac MYBP-C;, myosin-binding protein C, cardiac | 99.1 | |
| 2cry_A | 122 | KIN of IRRE-like protein 3; IG fold, KIN of irregu | 99.1 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.09 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.09 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.09 | |
| 1gl4_B | 98 | Basement membrane-specific heparan sulfate proteog | 99.09 | |
| 1lp9_E | 194 | T-cell receptor alpha chain; immunoregulatory comp | 99.08 | |
| 3khq_A | 133 | B-cell antigen receptor complex-associated protei | 99.08 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.08 | |
| 1neu_A | 124 | Myelin P0 protein; structural protein, glycoprotei | 99.08 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.08 | |
| 2eo1_A | 102 | OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024 | 99.07 | |
| 1pko_A | 139 | Myelin oligodendrocyte glycoprotein; IGV-domain, i | 99.07 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.07 | |
| 4hwu_A | 95 | Fibroblast growth factor receptor 2; FGFR2, KGFR, | 99.07 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.06 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.06 | |
| 2ywz_A | 111 | NEW antigen receptor variable domain; IG VNAR, imm | 99.06 | |
| 1xau_A | 122 | B- and T-lymphocyte attenuator; IG domain, beta sa | 99.05 | |
| 2ens_A | 96 | Advanced glycosylation END product-specific recept | 99.05 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.05 | |
| 2q87_A | 110 | CMRF35-H antigen; all-beta, immunoglobulin, IG-sup | 99.05 | |
| 2dku_A | 103 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.05 | |
| 2ywz_A | 111 | NEW antigen receptor variable domain; IG VNAR, imm | 99.04 | |
| 1jhl_L | 108 | IGG1-kappa D11.15 FV (light chain); complex(antibo | 99.04 | |
| 1zxq_A | 192 | ICAM-2, intercellular adhesion molecule-2; immunog | 99.04 | |
| 3q0h_A | 117 | T cell immunoreceptor with IG and ITIM domains; im | 99.04 | |
| 1jhl_L | 108 | IGG1-kappa D11.15 FV (light chain); complex(antibo | 99.04 | |
| 1sq2_N | 113 | Novel antigen receptor; immunoglobulin fold, prote | 99.03 | |
| 1h5b_A | 113 | Murine T cell receptor (TCR) valpha domain; immune | 99.03 | |
| 3khq_A | 133 | B-cell antigen receptor complex-associated protei | 99.02 | |
| 4gos_A | 125 | V-SET domain-containing T-cell activation inhibit; | 99.02 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.02 | |
| 2coq_A | 108 | NEW antigen receptor variable domain; IG VNAR, nat | 99.02 | |
| 1sq2_N | 113 | Novel antigen receptor; immunoglobulin fold, prote | 99.02 | |
| 2coq_A | 108 | NEW antigen receptor variable domain; IG VNAR, nat | 99.02 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.01 | |
| 2nms_A | 124 | CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4 | 99.01 | |
| 3rrq_A | 129 | Protein PD-1, programmed cell death protein 1; pro | 99.01 | |
| 3bp6_A | 117 | Programmed cell death protein 1; PD-1, PD-L2, comp | 99.01 | |
| 3moq_A | 126 | NEW antigen receptor variable domain, P3(40) PEPT | 99.0 | |
| 2oyp_A | 109 | Hepatitis A virus cellular receptor 2; TIM-3, T-ce | 99.0 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 98.99 | |
| 1mqk_L | 120 | Antibody 7E2 FV fragment, light chain; membrane pr | 98.99 | |
| 3moq_A | 126 | NEW antigen receptor variable domain, P3(40) PEPT | 98.99 | |
| 2or8_A | 116 | Hepatitis A virus cellular receptor 1 homolog; bet | 98.99 | |
| 3q0h_A | 117 | T cell immunoreceptor with IG and ITIM domains; im | 98.98 | |
| 2ptt_A | 110 | CD48 antigen; CD244, CD48, NK cell receptor, X-RAY | 98.98 | |
| 1eaj_A | 126 | Coxsackie virus and adenovirus receptor; virus/vir | 98.98 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 98.98 | |
| 1hkf_A | 122 | NKP44, NK cell activating receptor; natural cytoto | 98.97 | |
| 3bik_B | 134 | Programmed cell death protein 1; CO-stimulation, r | 98.97 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 98.97 | |
| 2q20_A | 109 | VK1 O18/O8 germline light chain variable domain; A | 98.96 | |
| 1z9m_A | 145 | GAPA225; nectin-like, IG-like domain, V domain, ce | 98.96 | |
| 3udw_C | 118 | Poliovirus receptor; PVR tigit IGSF signal transdu | 98.96 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 98.96 | |
| 1i8k_A | 107 | Epidermal growth factor receptor antibody MR1SCFV | 98.96 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 98.95 | |
| 3qjh_A | 205 | 5C.C7 alpha chain; immunoglobulin domain, T cell r | 98.95 | |
| 1fo0_A | 116 | Protein (BM3.3 T cell receptor alpha-chain); class | 98.95 | |
| 1qfw_M | 108 | FV, antibody (anti beta subunit) (light chain); gl | 98.95 | |
| 2e27_L | 119 | Anti-ciguatoxin antibody, light chain; immunoglobu | 98.95 | |
| 2q20_A | 109 | VK1 O18/O8 germline light chain variable domain; A | 98.94 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 98.94 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 98.93 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 98.93 | |
| 4gjt_B | 123 | Poliovirus receptor-related protein 4; six-bladed | 98.93 | |
| 2v9t_A | 117 | Roundabout homolog 1; structural protein-receptor | 98.93 | |
| 2e27_L | 119 | Anti-ciguatoxin antibody, light chain; immunoglobu | 98.93 | |
| 1tvd_A | 116 | T cell receptor, ES204 V delta; immunoreceptor, TC | 98.93 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 98.93 | |
| 3r08_E | 82 | T-cell surface glycoprotein CD3 epsilon chain; ant | 98.92 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 98.92 | |
| 2xt1_B | 121 | Camelid VHH 9; viral protein-immune system complex | 98.92 | |
| 2i24_N | 121 | NEW antigen receptor PBLA8; immunoglobulin fold, i | 98.91 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 98.91 | |
| 2or7_A | 115 | T-cell immunoglobulin and mucin domain- containing | 98.91 | |
| 1h5b_A | 113 | Murine T cell receptor (TCR) valpha domain; immune | 98.9 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 98.9 | |
| 2yc1_B | 146 | Single chain antibody fragment 9004G; immune syste | 98.9 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 98.9 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 98.9 | |
| 1kxv_C | 121 | Camelid VHH domain CAB10; beta 8 alpha 8, beta bar | 98.9 | |
| 2qhl_A | 111 | Novel immune-type receptor 10; immunoglobulin vari | 98.9 | |
| 1i3g_L | 111 | Antibody FV fragment; antibiotic; 2.44A {Mus muscu | 98.9 | |
| 1xau_A | 122 | B- and T-lymphocyte attenuator; IG domain, beta sa | 98.89 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 98.89 | |
| 1qfw_M | 108 | FV, antibody (anti beta subunit) (light chain); gl | 98.89 | |
| 2qsq_A | 111 | Carcinoembryonic antigen-related cell adhesion MO; | 98.88 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 98.88 | |
| 1nko_A | 132 | Sialic acid binding IG-like lectin 7; immunoglobul | 98.88 | |
| 2yc1_A | 117 | Single chain antibody fragment 9004G; immune syste | 98.88 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.88 | |
| 1i8k_A | 107 | Epidermal growth factor receptor antibody MR1SCFV | 98.88 | |
| 2p45_B | 123 | Antibody CAB-RN05; seMet phasing, camelid single-d | 98.88 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 98.88 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 98.88 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 98.88 | |
| 3b9v_A | 120 | Heavy chain variable domain; antibody engineering, | 98.88 | |
| 1xed_A | 117 | Polymeric-immunoglobulin receptor; IG-like fold, i | 98.87 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 98.87 | |
| 1pew_A | 109 | JTO2, A lambda-6 type immunoglobulin light chain, | 98.87 | |
| 1mqk_L | 120 | Antibody 7E2 FV fragment, light chain; membrane pr | 98.87 | |
| 1j05_L | 111 | T84.66 antibody, anti-CEA MAB T84.66, light chain; | 98.87 | |
| 3bia_X | 116 | T-cell immunoglobulin and mucin domain- containing | 98.87 | |
| 2z35_A | 112 | T-cell receptor alpha-chain; immune receptor, immu | 98.87 |
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=159.29 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=117.5
Q ss_pred CeeEe---eeCCCCCceEEEEeeCcceeeee----cceee----ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQR---KLKGLLPTRVSWIRHRDIHILTV----GSYTY----TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C---~~~~~p~~~v~W~~~~~~~~~~~----~~~~~----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.| .+.+.|.|.|.|+|++....... ..... ...+++... ...+.+.|.|.+++.+|+|.|+|.+
T Consensus 11 v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a 88 (203)
T 4fa8_A 11 VTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH--RSANTFFLVVTAANISHDGNYLCRM 88 (203)
T ss_dssp EEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEE--EETTEEEEEESSCCGGGCEEEEEEE
T ss_pred EEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEE--EcCCEEEEEEccCCHHHCeEEEEEE
Confidence 36999 57788999999999764211110 11111 112344443 3456789999999999999999999
Q ss_pred cCC-CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceE
Q psy13371 70 STQ-PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148 (212)
Q Consensus 70 ~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (212)
.+. +..+..+.|.|..|+.....+....+.+|+.++|.|.+.+.|.|. +.|++++..+........+.....++.
T Consensus 89 ~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~--v~W~~~~~~~~~~~~~~~r~~~~~~g~-- 164 (203)
T 4fa8_A 89 KLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPH--VQWLMPEGVEPAPTAANGGVMKEKDGS-- 164 (203)
T ss_dssp EETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCE--EEECCC------------CCEECTTSC--
T ss_pred EcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCE--EEEEECCeeecCcccccceEEEeCCCC--
Confidence 986 455667788887777666566666788999999999999988776 999987655432222223334444443
Q ss_pred EEEEEEeeeeecCCEEEEEEcccCCeeEEEEEE
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~v 181 (212)
...+.+.++..+|+|.|+|.|.|..+..-.+++
T Consensus 165 l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v~v 197 (203)
T 4fa8_A 165 LSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYV 197 (203)
T ss_dssp EEEEEEEEECSSCCCCEEEEEESSSCEEEEEEE
T ss_pred EEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence 234667789999999999999999666554444
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-23 Score=142.38 Aligned_cols=152 Identities=19% Similarity=0.271 Sum_probs=114.6
Q ss_pred CeeEeeeCCCCC--ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEE
Q psy13371 1 MLHQRKLKGLLP--TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 78 (212)
+.|.|.+.+.|. +.+.|+|++. .+... + ....+..|.|.+++.+|+|.|+|.+.+.+..+..
T Consensus 21 v~l~C~~~~~~~~~~~v~W~~~~~--~~~~~--------~------~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~ 84 (190)
T 2wv3_A 21 VTLQCNLTSSSHTLMYSYWTKNGV--ELTAT--------R------KNASNMEYRINKPRAEDSGEYHCVYHFVSAPKAN 84 (190)
T ss_dssp EEEEEEEEECSSCEEEEEEEETTE--ECTTC--------C------BCCSEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred EEEEEEeccCCCCceEEEEEECCE--ECccc--------c------eEeccEEEEEecCCcccCEEEEEEEEeCCccccc
Confidence 368999999887 8999999773 22211 1 1114568999999999999999999987556677
Q ss_pred EEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEE--cCeEEEeeCCCCceeEEeecCceEEEEEEEee
Q psy13371 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH--HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 79 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
+.|.|..+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++ ++..+...... .+......+. .+.|.|.+
T Consensus 85 ~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~--i~W~~~~~g~~~~~~~~~-~~~~~~~~~~--~~~L~i~~ 159 (190)
T 2wv3_A 85 ATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPE--WMWRKKENGVFEEISNSS-GRFFIINKEN--YTELNIVN 159 (190)
T ss_dssp EEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCE--EEEEEEETTEEEECCCTT-SCEEEEECSS--EEEEEECS
T ss_pred EEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCc--eEEEEcCCCceeeeecCC-CeEEEecCCC--eeEEEEEe
Confidence 888888887766667777899999999999998887665 99999 66666433222 2333333332 23599999
Q ss_pred ee-ecCCEEEEEEcccCC
Q psy13371 157 AE-LKDSGKYSCSPSNAD 173 (212)
Q Consensus 157 ~~-~~d~g~y~C~~~n~~ 173 (212)
+. .+|.|.|+|.|.|..
T Consensus 160 ~~~~~d~G~Y~C~a~N~~ 177 (190)
T 2wv3_A 160 LQITEDPGEYECNATNSI 177 (190)
T ss_dssp CCTTTSCEEEEEEEECSS
T ss_pred ccccCCCEEEEEEEEecC
Confidence 99 799999999999983
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-23 Score=145.14 Aligned_cols=158 Identities=23% Similarity=0.367 Sum_probs=111.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEccc-CCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWA-QKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.|.|.+.+.|+|++. .+. +++.............|.|.++ +.+|+|.|+|.+.+. +.....
T Consensus 24 v~L~C~~~g~p~~~v~W~k~~~--~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~ 93 (212)
T 2yd6_A 24 ASFICQATGDPRPKIVWNKKGK--KVS--------NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVS 93 (212)
T ss_dssp EEEEEEEEEESCCEEEEEETTE--ECC--------CTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEeeCCCCEEEEEECCc--CCC--------CCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEE
Confidence 4689999999999999999873 222 2233333223335668999999 599999999999986 345566
Q ss_pred EEEEEecc-------cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEE
Q psy13371 79 VNLNVVVP-------TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151 (212)
Q Consensus 79 ~~l~v~~~-------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (212)
+.|.|... +.....+....+..|+.+.|.|.+.+.|.|. +.|++++..+....... +......+. .+.
T Consensus 94 ~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~--v~W~~~g~~l~~~~~~~-~~~~~~~~~--~~~ 168 (212)
T 2yd6_A 94 TRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPE--ITWFKDFLPVDTSNNNG-RIKQLRSES--IGA 168 (212)
T ss_dssp EEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCE--EEEEETTEEC------C-CEEEEEETT--EEE
T ss_pred EEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCe--EEEEECCccccCcCCCc-eEEEEecCC--eEE
Confidence 77777653 2334455666788999999999999887665 99999998875432222 122221111 246
Q ss_pred EEEeeeeecCCEEEEEEcccCC
Q psy13371 152 LLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 152 l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
|.|.++..+|.|.|+|.|.|..
T Consensus 169 L~i~~~~~~d~G~Y~C~a~N~~ 190 (212)
T 2yd6_A 169 LQIEQSEESDQGKYECVATNSA 190 (212)
T ss_dssp EEECSCCGGGCEEEEEEEEETT
T ss_pred EEEcCCCcccCEEEEEEEECCC
Confidence 9999999999999999999983
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-23 Score=142.60 Aligned_cols=156 Identities=21% Similarity=0.293 Sum_probs=113.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.+.+.|+|++. . +.... ..++... ...+...|.|.+++.+|+|.|+|.+.+. +......
T Consensus 23 v~l~C~~~~~p~~~v~W~~~~~-~-~~~~~-----~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~ 93 (194)
T 2a38_A 23 ATFEAHISGFPVPEVSWFRDGQ-V-ISTST-----LPGVQIS--FSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTA 93 (194)
T ss_dssp EEEEEEEEEESCCEEEEEESSS-B-CCTTT-----STTCEEE--EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEecCCCEEEEEECCE-E-ccccc-----CCceEEE--eCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEE
Confidence 4689999999999999999773 2 22111 1233333 2345678999999999999999999875 3445556
Q ss_pred EEEEec---ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEee
Q psy13371 80 NLNVVV---PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 80 ~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.+.|.. +|.....+....+..|+.+.|.|.+.+.|.|. +.|++++..+.. ........++.. ..|.|.+
T Consensus 94 ~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--v~W~~~~~~~~~----~~~~~~~~~~~~--~~L~i~~ 165 (194)
T 2a38_A 94 ELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPV--VKFYRDGAEIQS----SLDFQISQEGDL--YSLLIAE 165 (194)
T ss_dssp EEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCE--EEEEETTEECCC----SSSEEEEEETTE--EEEEEEE
T ss_pred EEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCe--EEEEECCEECCC----CCcEEEEEcCCE--EEEEECC
Confidence 677763 44445556667889999999999998887666 999999987732 222233333322 3599999
Q ss_pred eeecCCEEEEEEcccCC
Q psy13371 157 AELKDSGKYSCSPSNAD 173 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~~ 173 (212)
+..+|.|.|+|.|.|..
T Consensus 166 ~~~~d~G~Y~C~a~n~~ 182 (194)
T 2a38_A 166 AYPEDSGTYSVNATNSV 182 (194)
T ss_dssp ECGGGCEEEEEEEEETT
T ss_pred CChhcCeEEEEEEEeCC
Confidence 99999999999999984
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=141.73 Aligned_cols=156 Identities=22% Similarity=0.306 Sum_probs=113.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.+.+.|+|++. .+.. .+.++.... ...+...|.|.+++.+|+|.|+|.+.+. +..+..+
T Consensus 22 v~l~C~~~~~p~~~v~W~~~~~-~~~~-------~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~ 92 (197)
T 2j8h_A 22 ATLVCKVTGHPKPIVKWYRQGK-EIIA-------DGLKYRIQE-FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 92 (197)
T ss_dssp EEEEEEEECSSCCEEEEEETTE-ECCC-------CSSSEEEEE-ETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeecCCCEEEEEECCE-ECcc-------CCCcEEEEE-cCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEE
Confidence 4689999999999999999773 2221 123555542 3456679999999999999999999886 3446667
Q ss_pred EEEEecccceeeC-----CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEE
Q psy13371 80 NLNVVVPTAEILG-----SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154 (212)
Q Consensus 80 ~l~v~~~~~~~~~-----~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 154 (212)
.|.|..++..... +....+.+|+.+.|.|.+.+.|.|. +.|++++..+... ........+. ...|.|
T Consensus 93 ~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~--i~W~~~~~~~~~~----~~~~~~~~~~--~~~L~i 164 (197)
T 2j8h_A 93 SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPV--ITWQKGQDLIDNN----GHYQVIVTRS--FTSLVF 164 (197)
T ss_dssp EEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCE--EEEEESSCEECSS----SSCEEEECSS--EEEEEC
T ss_pred EEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCc--EEEEECCEEeecC----CCEEEEEcCC--ceEEEE
Confidence 7777665533221 2345688899999999999887665 9999999877421 1222222221 245999
Q ss_pred ee-eeecCCEEEEEEcccCC
Q psy13371 155 QQ-AELKDSGKYSCSPSNAD 173 (212)
Q Consensus 155 ~~-~~~~d~g~y~C~~~n~~ 173 (212)
.+ +..+|+|.|+|.|.|..
T Consensus 165 ~~~~~~~d~G~Y~C~a~N~~ 184 (197)
T 2j8h_A 165 PNGVERKDAGFYVVCAKNRF 184 (197)
T ss_dssp TTCCCGGGCEEEEEEEEETT
T ss_pred eCCCCcccCEeEEEEEEeCC
Confidence 99 99999999999999983
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-23 Score=142.34 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=107.3
Q ss_pred eeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 2 LHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
.|.|.+.+ .|.|.|.|+|++. .+.. +.++.+..+...+..+|.|.+++.+|+|.|+|.+.|+ .......
T Consensus 21 ~l~c~~~~~~P~p~i~W~kng~-~l~~--------~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng-~a~~~~~ 90 (207)
T 3rbs_A 21 RFWMQAEKLSGNAKVNYIFNEK-EIFE--------GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG-KATNHST 90 (207)
T ss_dssp EEEEECSCCCSCCEEEEEETTE-EECS--------SSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEET-TEEEEEE
T ss_pred EEEEEEecCCCCCEEEEEECCE-ECcc--------CCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECC-CeEEEEE
Confidence 57899875 6999999999873 3322 3455554333456778999999999999999999983 3333333
Q ss_pred EEEec--------------------ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCcee
Q psy13371 81 LNVVV--------------------PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVS 139 (212)
Q Consensus 81 l~v~~--------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~ 139 (212)
+.+.. .++.+..+.+..+.+|+.+.|.|.+.+. |.|. +.|++++.++.... +.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~--i~W~k~g~~l~~~~----~~ 164 (207)
T 3rbs_A 91 VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETH--IVWYKDEREISVDE----KH 164 (207)
T ss_dssp EEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCE--EEEEETTEEECCCC----CC
T ss_pred EEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCE--EEEEECCEECCCCC----ce
Confidence 32210 0122222224678899999999999987 6665 99999999884321 11
Q ss_pred EEeecCceEEEEEEEeeeeecCCEEEEEEcccCCeeE
Q psy13371 140 VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVAS 176 (212)
Q Consensus 140 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~ 176 (212)
. ... ....|.|.++..+|+|.|+|.|.|..+..
T Consensus 165 ~-~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 197 (207)
T 3rbs_A 165 D-FKD---GICTLLITEFSKKDAGIYEVILKDDRGKD 197 (207)
T ss_dssp C-CSS---EEEEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred E-cCC---CEEEEEECCCCcccCEEEEEEEEcCCCEE
Confidence 1 111 12359999999999999999999985433
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=141.38 Aligned_cols=154 Identities=21% Similarity=0.375 Sum_probs=115.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCC-CCCEEEEEEecCC-Cc-eeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQK-RDAGVYECQLSTQ-PV-RSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~-~~-~~~ 77 (212)
+.|.|.+.+.|.+.+.|+|++. .+. ..+.|+.... ...+...|.|.+++. +|+|.|+|.+.+. +. .+.
T Consensus 24 v~l~C~~~g~p~~~v~W~~~~~--~~~------~~~~~~~~~~-~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~ 94 (212)
T 2yd1_A 24 ASFYCAARGDPPPSIVWRKNGK--KVS------GTQSRYTVLE-QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSA 94 (212)
T ss_dssp EEEEEEEECSSCCEEEEEETTE--ECC------TTSTTEEEEE-ETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEE
T ss_pred EEEEEEEccCCCCeEEEEECCE--ECC------CCcceeEEEE-cCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEe
Confidence 4689999999999999999773 221 1245666653 244557899999999 9999999999986 33 566
Q ss_pred EEEEEEecc-------cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEE
Q psy13371 78 FVNLNVVVP-------TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTS 150 (212)
Q Consensus 78 ~~~l~v~~~-------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (212)
.+.|.|... |.....+....+..|+.+.|.|.+.+.|.|. +.|++++..+.... ... ....+
T Consensus 95 ~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~--i~W~~~~~~~~~~~---~~~-~~~~~----- 163 (212)
T 2yd1_A 95 DATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPN--IYWIKNQTKVDMSN---PRY-SLKDG----- 163 (212)
T ss_dssp EEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCE--EEEEETTEECCTTS---TTE-EEETT-----
T ss_pred eEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCe--EEEEECCeEcccCC---CeE-EccCC-----
Confidence 777888764 3344556667788999999999998886665 99999998774221 111 22233
Q ss_pred EEEEeeeeecCCEEEEEEcccCCe
Q psy13371 151 YLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 151 ~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
.|.|.++..+|+|.|+|.|.|..+
T Consensus 164 ~L~i~~v~~~d~G~Y~C~a~N~~G 187 (212)
T 2yd1_A 164 FLQIENSREEDQGKYECVAENSMG 187 (212)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTE
T ss_pred eEEEccCChhhCEEEEEEeecCCC
Confidence 499999999999999999999843
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=139.65 Aligned_cols=156 Identities=21% Similarity=0.356 Sum_probs=117.8
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeE
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~ 77 (212)
+.|.|.+.+.+ .+.+.|++.++..+.. .+.++.... .......|.|.+++.+|+|.|+|.+.+.. ..+.
T Consensus 20 v~l~C~~~~~~~~~~v~W~~~~g~~~~~-------~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 91 (191)
T 1epf_A 20 KFFLCQVAGDAKDKDISWFSPNGEKLSP-------NQQRISVVW-NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA 91 (191)
T ss_dssp EEEEEEECCCSCCCEEEEECTTSCEECC-------BSSSEEEEE-EETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEE
T ss_pred EEEEEECCCCCCCceEEEEeCCCccccC-------CCCeEEEEE-CCCCceEEEEccCCcccCEEEEEEEEcCCCcceEE
Confidence 36899999976 8999999944323322 244666553 23467799999999999999999999863 4556
Q ss_pred EEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 78 FVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 78 ~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
.+.|.|..++.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+..... .+......+ .|.|.++
T Consensus 92 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--v~W~~~~~~~~~~~~--~~~~~~~~~-----~L~i~~~ 162 (191)
T 1epf_A 92 TVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPT--IIWKHKGRDVILKKD--VRFIVLSNN-----YLQIRGI 162 (191)
T ss_dssp EEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCE--EEEEETTEEGGGGCC--TTEEECTTS-----CEEETTC
T ss_pred EEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCE--EEEEECCEEeeccCC--ceEEEecCC-----eEEECCC
Confidence 6677777777666777778889999999999999887665 999999987743221 122333333 3999999
Q ss_pred eecCCEEEEEEcccCC
Q psy13371 158 ELKDSGKYSCSPSNAD 173 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~~ 173 (212)
..+|+|.|+|.|.|..
T Consensus 163 ~~~d~G~Y~C~a~n~~ 178 (191)
T 1epf_A 163 KKTDEGTYRCEGRILA 178 (191)
T ss_dssp CGGGCEEEEEEEEEGG
T ss_pred ChhhCEEEEEEEEEec
Confidence 9999999999999974
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=147.16 Aligned_cols=154 Identities=18% Similarity=0.263 Sum_probs=117.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.+.+.|++++. .+.. ..++... .......|.|.+++.+|+|.|+|.+.+. +.....+
T Consensus 117 ~~l~C~~~g~p~~~v~W~~~~~-~~~~--------~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 185 (284)
T 2rik_A 117 TRYECKIGGSPEIKVLWYKDET-EIQE--------SSKFRMS--FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185 (284)
T ss_dssp EEEEEEEESSSCCEEEEEETTE-ECCC--------SSSEEEE--EETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEEeeeCCCEEEEEECCE-ECcC--------CCcEEEE--EcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEE
Confidence 3689999999999999999873 2221 2233332 2235678999999999999999999986 4566777
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+... .......++. ...|.|.++..
T Consensus 186 ~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~--v~W~~~~~~~~~~----~~~~~~~~~~--~~~L~i~~v~~ 257 (284)
T 2rik_A 186 SLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQ--VSWHKDKRELRSG----KKYKIMSENF--LTSIHILNVDS 257 (284)
T ss_dssp EEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCE--EEEEETTEEECBT----TTEEEEEETT--EEEEEECSCCG
T ss_pred EEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCE--EEEEECCEECcCC----CCEEEEEcCC--EEEEEEcCCCc
Confidence 88888887666666777889999999999998877665 9999999887422 1222222222 24599999999
Q ss_pred cCCEEEEEEcccCC
Q psy13371 160 KDSGKYSCSPSNAD 173 (212)
Q Consensus 160 ~d~g~y~C~~~n~~ 173 (212)
+|.|.|+|.|.|..
T Consensus 258 ~d~G~Y~C~a~N~~ 271 (284)
T 2rik_A 258 ADIGEYQCKASNDV 271 (284)
T ss_dssp GGCEEEEEEEEETT
T ss_pred ccCEEEEEEEEeCC
Confidence 99999999999983
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-22 Score=137.60 Aligned_cols=153 Identities=18% Similarity=0.296 Sum_probs=111.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.+.+.|+|++. .+.. +.++.+. ......+|.|.+++.+|+|.|+|.+.+. +......
T Consensus 25 v~l~C~~~~~p~~~v~W~~~~~-~~~~--------~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~ 93 (197)
T 3lcy_A 25 AQLSCQIVGRPLPDIKWYRFGK-ELIQ--------SRKYKMS--SDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSS 93 (197)
T ss_dssp EEEEEEEEEESCCEEEEEETTE-EECC--------CSSEEEE--ESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEEecCCCCEEEEEECCE-ECCC--------CccEEEE--eCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEE
Confidence 4689999999999999999773 2221 3455554 3345678999999999999999999875 4455666
Q ss_pred EEEEecccceee---CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEee
Q psy13371 80 NLNVVVPTAEIL---GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 80 ~l~v~~~~~~~~---~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.+.|..++.... .+....+..|+.+.|.|.+.+.|.|. +.|++++..+.. .........+. ...|.|.+
T Consensus 94 ~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~--v~W~~~~~~~~~----~~~~~~~~~~~--~~~L~i~~ 165 (197)
T 3lcy_A 94 KLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPA--MTWFHGQKLLQN----SENITIENTEH--YTHLVMKN 165 (197)
T ss_dssp EEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCE--EEEEETTEECCC----CSSEEEEECSS--EEEEEESS
T ss_pred EEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCe--eEEeECCEECCC----CCceEEEEcCC--EEEEEEcc
Confidence 777766554332 23445678999999999999887776 999999987732 12222222222 14599999
Q ss_pred eee-cCCEEEEEEcccC
Q psy13371 157 AEL-KDSGKYSCSPSNA 172 (212)
Q Consensus 157 ~~~-~d~g~y~C~~~n~ 172 (212)
+.. +|.|.|+|.|.|.
T Consensus 166 ~~~~~d~G~Y~C~a~n~ 182 (197)
T 3lcy_A 166 VQRKTHAGKYKVQLSNV 182 (197)
T ss_dssp CCHHHHCEEEEEEEECS
T ss_pred ccchhhCceEEEEEEcC
Confidence 985 8999999999998
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-22 Score=138.71 Aligned_cols=154 Identities=21% Similarity=0.294 Sum_probs=107.4
Q ss_pred eeEeeeCCC-CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-ceeEEE
Q psy13371 2 LHQRKLKGL-LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFFV 79 (212)
Q Consensus 2 ~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~ 79 (212)
.|.|.+.+. |.+.+.|+|++. .+.. ++|+... ...+...|.|.+++.+|+|.|+|.+.+.. .....+
T Consensus 21 ~l~C~~~~~~p~~~i~W~~~g~-~i~~--------~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~ 89 (212)
T 2r15_A 21 QLYSFVTYYVEDLKVNWSHNGS-AIRY--------SDRVKTG--VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 89 (212)
T ss_dssp EEEEEBSSCCSSCEEEEEETTE-ECCC--------CSSEEEE--EETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEeccCCCceEEEEECCE-EccC--------CCeEEEE--EeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEE
Confidence 578888885 589999999873 2221 3455554 23356789999999999999999999853 333444
Q ss_pred EEEEec--------------------ccceee-CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCce
Q psy13371 80 NLNVVV--------------------PTAEIL-GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGV 138 (212)
Q Consensus 80 ~l~v~~--------------------~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~ 138 (212)
.+.+.. .++... .+....+.+|+.+.|.|.+.+.|.|. +.|++++..+.... ..
T Consensus 90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~--v~W~~~~~~~~~~~---~~ 164 (212)
T 2r15_A 90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE--VSWLKNEKALAQTD---HC 164 (212)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCE--EEEEETTEEECCCS---SE
T ss_pred EEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCce--EEEEECCeECccCC---CE
Confidence 443321 122222 34456789999999999999887776 99999998874221 11
Q ss_pred eEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 139 SVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 139 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
......+. .+.|.|.++..+|.|.|+|.|.|..
T Consensus 165 ~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~N~~ 197 (212)
T 2r15_A 165 NLKFEAGR--TAYFTINGVSTADSGKYGLVVKNKY 197 (212)
T ss_dssp EEEEETTT--EEEEEESSCCGGGCEEEEEEEEETT
T ss_pred EEEEcCCC--EEEEEEcCcchHHCeEEEEEEEcCC
Confidence 22222222 2469999999999999999999983
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-22 Score=158.60 Aligned_cols=153 Identities=19% Similarity=0.280 Sum_probs=118.4
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.+.|.|.|.+.|+|++. .+.. +.++... .......|.|.+++.+|+|.|+|.+.|. +..+..+.
T Consensus 310 ~l~C~~~g~P~p~v~W~k~~~-~l~~--------~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~ 378 (570)
T 3b43_A 310 RYECKIGGSPEIKVLWYKDET-EIQE--------SSKFRMS--FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTS 378 (570)
T ss_dssp EEEEEEESSSSCEEEEEETTE-ECCC--------SSSEEEE--EETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEE
T ss_pred EEEEEEeeCCCCEEEEeECCE-ECCC--------CCcEEEE--EECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 589999999999999999873 2221 2344433 2234568999999999999999999986 55677788
Q ss_pred EEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 81 l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
|.|..+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+.. +.......++. ...|.|.++..+
T Consensus 379 l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~--v~W~k~g~~l~~----~~~~~~~~~~~--~~~L~i~~v~~~ 450 (570)
T 3b43_A 379 LKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQ--VSWHKDKRELRS----GKKYKIMSENF--LTSIHILNVDSA 450 (570)
T ss_dssp ECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCC--CEEEETTEECCS----SSSEEEEEETT--EEEEEECSCCGG
T ss_pred EEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCE--EEEEECCEECcC----CCCEEEEEcCC--EEEEEECCCChh
Confidence 8888888776677777888999999999999988777 999999987732 22233333332 135999999999
Q ss_pred CCEEEEEEcccCC
Q psy13371 161 DSGKYSCSPSNAD 173 (212)
Q Consensus 161 d~g~y~C~~~n~~ 173 (212)
|+|.|+|.|.|..
T Consensus 451 D~G~Y~C~A~N~~ 463 (570)
T 3b43_A 451 DIGEYQCKASNDV 463 (570)
T ss_dssp GCEEEEEEEECSS
T ss_pred hCEEEEEEEEECC
Confidence 9999999999983
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=156.14 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=117.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|+++..+ ... ... ...+..|.|.+++.+|+|.|+|.+.|. +......
T Consensus 223 v~l~C~~~g~P~p~i~W~k~~~~~~-~~~---------~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 288 (384)
T 3kld_A 223 VKLECFALGNPVPTILWRRADGKPI-ARK---------ARR----HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG 288 (384)
T ss_dssp EEEEEEEEEESCCEEEEEETTCCCC-CTT---------CEE----CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeecCCCcEEEEeCCCccc-ccc---------cee----cCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence 3689999999999999999664222 111 011 113447999999999999999999986 4556677
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..+|.....+.+..+..|+.+.|.|.+.+.|.|. +.|++++..+... .+.. ...+ .|.|.++..
T Consensus 289 ~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~--i~W~k~g~~l~~~----~~~~-~~~~-----~L~i~~v~~ 356 (384)
T 3kld_A 289 QLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPT--YRWLKNGDPLLTR----DRIQ-IEQG-----TLNITIVNL 356 (384)
T ss_dssp EEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCE--EEEEETTEECCCB----TTEE-EETT-----EEEESSCCG
T ss_pred EEEEecCCccccCCCceEecCCCCEEEEeECCccCCCe--EEEEECCEECCCC----ccEE-EeCC-----EEEEeecCh
Confidence 88888877777777788899999999999999988776 9999999877321 1222 2222 499999999
Q ss_pred cCCEEEEEEcccCCe---eEEEEEEe
Q psy13371 160 KDSGKYSCSPSNADV---ASVYVHVL 182 (212)
Q Consensus 160 ~d~g~y~C~~~n~~~---~~~~~~v~ 182 (212)
+|+|.|+|.|.|..+ .++.+.|+
T Consensus 357 ~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 357 SDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred hhCEEEEEEEEeCCceEEeceEEEEe
Confidence 999999999999833 34445443
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-23 Score=143.68 Aligned_cols=169 Identities=18% Similarity=0.172 Sum_probs=114.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceee----eecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHIL----TVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~----~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-- 73 (212)
+.|.|.+.+.|.+.+.|+|....... .... .....++|+.+.. ..++.+|.|.+++.+|+|.|+|.+.+..
T Consensus 18 v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 95 (213)
T 3mj8_L 18 ATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN--SGNMATLTISKAQAGDEADYYCQSWDGTNS 95 (213)
T ss_dssp EEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEEETTTT
T ss_pred EEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe--cCCEEEEEECCCChhhCEEEEEEeccCCcc
Confidence 46999999999999999995421111 1000 0111246787763 5577899999999999999999998853
Q ss_pred --ceeEEEEEEEe----cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce
Q psy13371 74 --VRSFFVNLNVV----VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147 (212)
Q Consensus 74 --~~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (212)
.....+.|.|. .+|.....+....+.+|+.++|.|.+.+.+++...+.|++++..+....... .... .++..
T Consensus 96 ~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~-~~~~-~~~~~ 173 (213)
T 3mj8_L 96 AWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTT-QPSK-SDSKY 173 (213)
T ss_dssp EEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC-CCEE-ETTEE
T ss_pred eeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccC-CcCc-cCCcE
Confidence 23455677777 3444444444444558999999999998644445699999998873211000 0111 22221
Q ss_pred -EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 148 -TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 148 -~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+.|.|.+...+|.|.|+|.|.|+.
T Consensus 174 ~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 200 (213)
T 3mj8_L 174 MATSYLTMTADAWKSRNTFICKVTHGG 200 (213)
T ss_dssp EEEEEEEEESHHHHSCSCEEEEEEETT
T ss_pred EEEEEEEEeHHHcCCCCEEEEEEEECC
Confidence 23569999999999999999999985
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=139.58 Aligned_cols=151 Identities=21% Similarity=0.351 Sum_probs=114.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-C-ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-P-VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~-~~~~~ 78 (212)
+.|.|.+.+.|.+.+.|+|++. .+.. .+.|+.+.. ....|.|.+++.+|+|.|+|.+.+. + .....
T Consensus 25 v~l~C~~~~~p~~~i~W~~~~~--~~~~------~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 92 (192)
T 2iep_A 25 ATFMCAVESYPQPEISWTRNKI--LIKL------FDTRYSIRE----NGQLLTILSVEDSDDGIYCCTANNGVGGAVESC 92 (192)
T ss_dssp EEEECCEEEESCCEEEEEETTE--ECCT------TCTTEEEEG----GGTEEEESSCCGGGCEEEEEEEECSSSCCEEEE
T ss_pred EEEEeeCCCCCCCeEEEEECCE--Eccc------cCccEEEcC----CccEEEEcCCCcccCeEEEEEEEcCCCceeEeE
Confidence 3689999999999999999773 2221 134565542 2237999999999999999999985 2 24556
Q ss_pred EEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 79 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
+.+.|..++.....+....+..|+.+.|.|.+.+.|.+. +.|++++..+.. .........+ .|.|.++.
T Consensus 93 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--v~W~~~~~~~~~----~~~~~~~~~~-----~L~i~~~~ 161 (192)
T 2iep_A 93 GALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPS--VSWIKGDSALRE----NSRIAVLESG-----SLRIHNVQ 161 (192)
T ss_dssp EEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCE--EEEEETTEECCC----CSSEEECTTS-----CEEESSCC
T ss_pred EEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCce--EEEEeCCEEccC----CCcEEEecCC-----cEEEecCC
Confidence 677887777666666777899999999999998887665 999999987632 2222333333 39999999
Q ss_pred ecCCEEEEEEcccCCe
Q psy13371 159 LKDSGKYSCSPSNADV 174 (212)
Q Consensus 159 ~~d~g~y~C~~~n~~~ 174 (212)
.+|+|.|+|.|.|..+
T Consensus 162 ~~d~G~Y~C~a~n~~g 177 (192)
T 2iep_A 162 KEDAGQYRCVAKNSLG 177 (192)
T ss_dssp GGGCEEEEEEEEETTE
T ss_pred hhhCEEEEEEEEcCCC
Confidence 9999999999999843
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=147.98 Aligned_cols=163 Identities=22% Similarity=0.327 Sum_probs=119.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|+.....+..+. ...++|+.+.. ......|.|.+++.+|+|.|.|.+.|. +..+..+
T Consensus 18 v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~--~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 93 (389)
T 2jll_A 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGD--KSLDGRIEVKG--QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSM 93 (389)
T ss_dssp EEEEEEEECSSCCEEEEEETTTTEEECC----CCSSSSEEEEE--CSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEeecccCCeEEEEeCCCCceeccCc--CCCCCeEEEec--cCCcceEEEcccChhhCEEEEEEEEeCCCCcceEE
Confidence 468999999999999999983213332211 11246777653 346789999999999999999999985 5567778
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+...... .......+. ...|.|.++..
T Consensus 94 ~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--i~W~~~g~~l~~~~~~--~~~~~~~~~--~~~L~i~~~~~ 167 (389)
T 2jll_A 94 YLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPAS--IHWRRDKLVLPAKNTT--NLKTYSTGR--KMILEIAPTSD 167 (389)
T ss_dssp EEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCE--EEEEETTEESSCTTCT--TEEEEECSS--CEEEEECCCST
T ss_pred EEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCe--EEEEECCccCCcccCc--eEEEeccCC--EEEEEECCCCh
Confidence 88888777655544444678999999999999987665 9999999877432211 122222221 14599999999
Q ss_pred cCCEEEEEEcccCC
Q psy13371 160 KDSGKYSCSPSNAD 173 (212)
Q Consensus 160 ~d~g~y~C~~~n~~ 173 (212)
+|+|.|+|.|.|..
T Consensus 168 ~d~G~Y~C~a~N~~ 181 (389)
T 2jll_A 168 NDFGRYNCTATNHI 181 (389)
T ss_dssp TSSEEEEEEEEETT
T ss_pred hhCEEEEEEEEcCC
Confidence 99999999999983
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-22 Score=135.65 Aligned_cols=149 Identities=21% Similarity=0.270 Sum_probs=110.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~ 78 (212)
+.|.|.+.+.|.+.+.|+|++. .+... .+.............|.|.+++.+|+|.|+|.+.+.. ..+..
T Consensus 20 v~l~C~~~~~p~~~v~W~k~~~--~~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 90 (182)
T 1rhf_A 20 VKLNCSVEGMEEPDIQWVKDGA--VVQNL-------DQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP 90 (182)
T ss_dssp EEEEEEEESCSSCCEEEEETTE--ECCSS-------EEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCC
T ss_pred EEEEEEEeCCCCCeEEEEECCe--ecCCC-------CceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEE
Confidence 4689999999999999999773 22211 1222221122235689999999999999999999862 34567
Q ss_pred EEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 79 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
+.|.|..+|.....+....+.+|+.+.|.|.+.+.|.|. .+.|++++..+.... . . ...|.|.++
T Consensus 91 ~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~v~W~~~~~~~~~~~-----~----~----~~~L~i~~~- 155 (182)
T 1rhf_A 91 VWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPV-TIVWWRGTTKIGGPA-----P----S----PSVLNVTGV- 155 (182)
T ss_dssp EEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCC-EEEEEETTEECSCSE-----E----S----SEEEEECCC-
T ss_pred EEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCC-EEEEEcCCeECCCCC-----C----C----ceEEEEecc-
Confidence 788888888777777778899999999999999887661 499999998762110 0 1 135888877
Q ss_pred ecCCEEEEEEcccCCe
Q psy13371 159 LKDSGKYSCSPSNADV 174 (212)
Q Consensus 159 ~~d~g~y~C~~~n~~~ 174 (212)
+|+|.|+|.|.|..+
T Consensus 156 -~d~G~Y~C~a~N~~g 170 (182)
T 1rhf_A 156 -TQSTMFSCEAHNLKG 170 (182)
T ss_dssp -SSCEEEEEEEEETTE
T ss_pred -ccCeEEEEEEECCCC
Confidence 589999999999844
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=137.12 Aligned_cols=151 Identities=23% Similarity=0.445 Sum_probs=105.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC---ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP---VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~ 77 (212)
+.|.|.+.+.|.+.+.|++++. .+... .+.|+... .+.+|.|.+++.+|+|.|+|.+.+.. ....
T Consensus 20 v~l~C~~~~~p~~~v~W~~~~~-~~~~~------~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 87 (189)
T 2v5t_A 20 AEVVCRVSSSPAPAVSWLYHNE-EVTTI------SDNRFAML-----ANNNLQILNINKSDEGIYRCEGRVEARGEIDFR 87 (189)
T ss_dssp EEECCEEECSSCCEEEEEC------CBC------CCTTEEEC-----TTSCEEETTCCGGGCEEEEEEEEETTTTEEEEE
T ss_pred EEEEEEEcCCCCCEEEEEECCc-cceec------cCCeEEEe-----cCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEE
Confidence 3689999999999999999874 22211 13455554 23369999999999999999998752 2234
Q ss_pred EEEEEEecccceeeCCC--ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe
Q psy13371 78 FVNLNVVVPTAEILGSP--DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 78 ~~~l~v~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.+.+.+..++.....+. ...+.+|+.+.|.|.+.+.|.|. +.|++++..+... ........+ ..|.|.
T Consensus 88 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~--v~W~~~g~~~~~~----~~~~~~~~~----~~L~i~ 157 (189)
T 2v5t_A 88 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA--ISWFRNGKLIEEN----EKYILKGSN----TELTVR 157 (189)
T ss_dssp EEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCE--EEEEETTEECCCS----SSEEEETTT----TEEEEC
T ss_pred EEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCe--EEEEECCEECcCC----CcEEEecCC----CEEEEc
Confidence 45566666554443333 34677899999999999886665 9999999877321 122222222 249999
Q ss_pred eeeecCCEEEEEEcccCC
Q psy13371 156 QAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~~ 173 (212)
++..+|+|.|+|.|.|..
T Consensus 158 ~~~~~d~G~Y~C~a~n~~ 175 (189)
T 2v5t_A 158 NIINSDGGPYVCRATNKA 175 (189)
T ss_dssp SCCGGGCEEEEEEEEETT
T ss_pred CCChhhCeeEEEEEEeCC
Confidence 999999999999999983
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=158.38 Aligned_cols=155 Identities=21% Similarity=0.361 Sum_probs=118.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+. .+.++.+.. .....+|+|.++..+|+|.|+|.+.|. +.....+
T Consensus 402 v~l~C~~~g~P~p~v~W~k~g~--~l~-------~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 470 (570)
T 3b43_A 402 VHLECELQGTPPFQVSWHKDKR--ELR-------SGKKYKIMS--ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVG 470 (570)
T ss_dssp EEEEEEEESSSSCCCEEEETTE--ECC-------SSSSEEEEE--ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEEecCCCCEEEEEECCE--ECc-------CCCCEEEEE--cCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEE
Confidence 3689999999999999999873 222 134555542 234568999999999999999999996 5666777
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..+|.....+.+..+..|+.+.|.|.+.+.|.|. +.|++++..+... .........+. ...|.|.++..
T Consensus 471 ~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~--v~W~k~~~~~~~~---~~~~~~~~~~~--~~~L~i~~~~~ 543 (570)
T 3b43_A 471 SITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPIS--VAWFKDKGEIVRE---SDNIWISYSEN--IATLQFSRAEP 543 (570)
T ss_dssp EEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCC--CEEEETTEECCCC---TTTEEECCCSS--EEEEEESSCCT
T ss_pred EEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCE--EEEEeCCeEeccC---CCeEEEEECCC--EEEEEECcCCH
Confidence 88888888777777778889999999999999887777 9999998654221 11222222222 24699999999
Q ss_pred cCCEEEEEEcccCC
Q psy13371 160 KDSGKYSCSPSNAD 173 (212)
Q Consensus 160 ~d~g~y~C~~~n~~ 173 (212)
+|+|.|+|.|.|..
T Consensus 544 ~d~G~Y~C~a~N~~ 557 (570)
T 3b43_A 544 ANAGKYTCQIKNEA 557 (570)
T ss_dssp TCCEEEEEEEECSS
T ss_pred HHCEEEEEEEEECC
Confidence 99999999999983
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-21 Score=137.84 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=118.8
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee----eec---c---eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL----TVG---S---YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~----~~~---~---~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.| .+.+.|+|.+..... ... . .....++|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 97 (256)
T 1nqb_A 18 VKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCA 97 (256)
T ss_dssp EEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChhhCEEEEEE
Confidence 46999999875 689999996421111 100 0 00012478888865556788999999999999999999
Q ss_pred ecCCCc------eeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCC---ceEEEEE--cCeEEEe--e-C-
Q psy13371 69 LSTQPV------RSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPP---AYIFWYH--HDEVISY--D-S- 133 (212)
Q Consensus 69 ~~~~~~------~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~---~~v~W~~--~~~~~~~--~-~- 133 (212)
+.+... ......|.|..++.....|....+.+|+.++|.|.+.+.+.+. ..+.|++ ++..+.. . .
T Consensus 98 ~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~ 177 (256)
T 1nqb_A 98 RYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVS 177 (256)
T ss_dssp ECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTT
T ss_pred EeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeC
Confidence 998521 1234567776665555566777899999999999998876541 2499999 4543321 0 0
Q ss_pred ----CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC----CeeEEEEEEe
Q psy13371 134 ----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA----DVASVYVHVL 182 (212)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~----~~~~~~~~v~ 182 (212)
....+....... ....|.|.++..+|+|.|+|.+.|. .+....+.|.
T Consensus 178 ~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 178 NRFSGVPDRFSGSGSG--TDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp EECTTCCTTEEEEEET--TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CCCCccCCcEEEEccC--CEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence 001122221111 1246999999999999999999985 2333455553
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-21 Score=138.63 Aligned_cols=153 Identities=24% Similarity=0.365 Sum_probs=113.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.+.+.|+|++. .+.. +.++... ...+...|.|.+++.+|+|.|+|.+.+. +..+..+
T Consensus 23 v~l~C~~~g~p~~~v~W~~~~~-~~~~--------~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~ 91 (284)
T 2rik_A 23 GTFKCHVTGTAPIKITWAKDNR-EIRP--------GGNYKMT--LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSA 91 (284)
T ss_dssp EEEEEEEESSSCCEEEEEETTE-ECCS--------SSSEEEE--EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEECCE-ECcC--------CCcEEEE--EcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEE
Confidence 3689999999999999999873 2221 2344443 2335678999999999999999999885 4556677
Q ss_pred EEEEecccceeeCC-CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 80 NLNVVVPTAEILGS-PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 80 ~l~v~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
.|.|..+|.....+ ....+.+|+.+.|.|.+.+.|.+. +.|++++..+... .......... ...|.|.++.
T Consensus 92 ~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~--v~W~~~~~~~~~~----~~~~~~~~~~--~~~L~i~~~~ 163 (284)
T 2rik_A 92 QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIK--VLWYKDETEIQES----SKFRMSFVES--VAVLEMYNLS 163 (284)
T ss_dssp EEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCE--EEEEETTEECCCS----SSEEEEEETT--EEEEEECSCC
T ss_pred EEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCE--EEEEECCEECcCC----CcEEEEEcCC--EEEEEECCCC
Confidence 88888877655443 345688999999999998876555 9999999876322 1111211111 2459999999
Q ss_pred ecCCEEEEEEcccC
Q psy13371 159 LKDSGKYSCSPSNA 172 (212)
Q Consensus 159 ~~d~g~y~C~~~n~ 172 (212)
.+|+|.|+|.+.|.
T Consensus 164 ~~d~G~Y~C~a~n~ 177 (284)
T 2rik_A 164 VEDSGDYTCEAHNA 177 (284)
T ss_dssp GGGCEEEEEEEECS
T ss_pred cccCEEEEEEEEcC
Confidence 99999999999987
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-21 Score=137.45 Aligned_cols=178 Identities=17% Similarity=0.222 Sum_probs=116.3
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee----ecc------eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT----VGS------YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~----~~~------~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.| .+.+.|+|........ ... ......+|+.+..+...+.++|+|.+++.+|+|.|+|.
T Consensus 20 v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 99 (247)
T 2ghw_B 20 LRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA 99 (247)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEe
Confidence 46999999987 6889999964321111 000 00012468888866566788999999999999999999
Q ss_pred ecCC-Cc--eeEEEEEEEecc--------------cc-eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEE--cCeE
Q psy13371 69 LSTQ-PV--RSFFVNLNVVVP--------------TA-EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH--HDEV 128 (212)
Q Consensus 69 ~~~~-~~--~~~~~~l~v~~~--------------~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~--~~~~ 128 (212)
+.+. .. ......|.|..+ ++ ....+....+.+|+.++|.|.+.+.+.+. +.|++ ++..
T Consensus 100 ~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~--v~W~k~~~g~~ 177 (247)
T 2ghw_B 100 RDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSN--LAWYQQKPGQA 177 (247)
T ss_dssp EEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTC--EEEEEECTTSC
T ss_pred eeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccce--EEEEEECCCCC
Confidence 9886 11 123346777643 12 33345566789999999999998877665 99998 4443
Q ss_pred EEe---e-----CCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC----CeeEEEEEEe
Q psy13371 129 ISY---D-----SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA----DVASVYVHVL 182 (212)
Q Consensus 129 ~~~---~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~----~~~~~~~~v~ 182 (212)
+.. . .....+......+ ....|.|.++..+|+|.|+|.|.|. .+....+.|.
T Consensus 178 ~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 178 PRPLIYDASTRATGIPDRFSGSGSG--TDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp CEEEEETTTEECTTCCTTEEEECSS--SEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred cEEEEEEeccCCCccCCCEEEecCC--CeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 211 0 0011122222111 2346999999999999999999985 2333455554
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=136.00 Aligned_cols=166 Identities=17% Similarity=0.131 Sum_probs=105.1
Q ss_pred CeeEeeeCCCCCceEEEEee--CcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--cee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRH--RDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~ 76 (212)
+.|.|.+.+ |.+.+.|++. ++ ..+..+ .++... ....|.|.+++.+|+|.|+|.+.+.+ ..+
T Consensus 27 v~L~C~~~~-p~~~v~w~~~~~~g-~~~~~~-------~~~~~~-----~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s 92 (213)
T 2x1w_L 27 VVIPCLGSI-SNLNVSLCARYPEK-RFVPDG-------NRISWD-----SKKGFTIPSYMISYAGMVFCEAKINDESYQS 92 (213)
T ss_dssp EEECCCBSS-TTCCEEEEEETTTE-EECCCS-------SSCEEE-----TTTEEEEEGGGTTTCSEEEEEEC----CEEC
T ss_pred EEEeeccCC-CCcEEEEEhhcCCC-ccccCC-------Cccccc-----CCccEEEccCChhcCceEEEEEEECCeeEEE
Confidence 369999987 6699999986 33 333211 122222 22369999999999999999998753 223
Q ss_pred EEEEEEEec--ccceeeCC-CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEee-c---CceEE
Q psy13371 77 FFVNLNVVV--PTAEILGS-PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE-K---GEVTT 149 (212)
Q Consensus 77 ~~~~l~v~~--~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~---~~~~~ 149 (212)
..+.|.|.. ++.....+ ....+.+|+.++|.|.+.+.|.+...+.|++++..+...... ...... . .....
T Consensus 93 ~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~ 170 (213)
T 2x1w_L 93 IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV--NRDLKTQSGSEMKKFL 170 (213)
T ss_dssp CCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEE--EEEECCCSSCSCEEEE
T ss_pred EEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEe--ccccccccCccceeee
Confidence 335666644 22233333 344889999999999999876655569999888753110000 000000 0 01223
Q ss_pred EEEEEeeeeecCCEEEEEEcccCC---eeEEEEEEe
Q psy13371 150 SYLLIQQAELKDSGKYSCSPSNAD---VASVYVHVL 182 (212)
Q Consensus 150 ~~l~i~~~~~~d~g~y~C~~~n~~---~~~~~~~v~ 182 (212)
+.|.|.+++.+|+|.|+|.|.|.. ...+.+.|.
T Consensus 171 ~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 206 (213)
T 2x1w_L 171 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206 (213)
T ss_dssp EEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEe
Confidence 569999999999999999999983 344445443
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-21 Score=137.40 Aligned_cols=179 Identities=14% Similarity=0.153 Sum_probs=118.3
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeeec----------ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTVG----------SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~----------~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|.........- .......+|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 20 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 99 (256)
T 3umt_A 20 VKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSEDSAVYYCA 99 (256)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcccCEEEEEE
Confidence 46999999876 789999986532211100 001112478988876666788999999999999999999
Q ss_pred ecCC-----CceeEEEEEEEec----------------ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC-
Q psy13371 69 LSTQ-----PVRSFFVNLNVVV----------------PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD- 126 (212)
Q Consensus 69 ~~~~-----~~~~~~~~l~v~~----------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~- 126 (212)
+.+. ........|.|.. ++.....+....+.+|+.++|.|.+.+.+.+. +.|+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~--v~W~k~~~ 177 (256)
T 3umt_A 100 RDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSN--LNWLQQKP 177 (256)
T ss_dssp ECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTC--EEEEEECT
T ss_pred EccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcE--EEEEEECC
Confidence 9875 1123345677764 33444556667899999999999998876665 9999852
Q ss_pred -eEEE--eeC------CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC----CeeEEEEEEee
Q psy13371 127 -EVIS--YDS------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA----DVASVYVHVLN 183 (212)
Q Consensus 127 -~~~~--~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~----~~~~~~~~v~~ 183 (212)
.... ... ....+......+. ...|.|.++..+|+|.|+|.+.|. .+....+.|..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~ 245 (256)
T 3umt_A 178 DGTIKRLIYATSSLDSGVPKRFSGSRSGS--DYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKR 245 (256)
T ss_dssp TCCEEEEEETTTEECTTSCTTEEEEEETT--EEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred CCCcEEEEEeccccCCccCCCEEEecCCC--EEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence 2211 100 0112222222222 245999999999999999999985 23444555543
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-22 Score=149.09 Aligned_cols=146 Identities=23% Similarity=0.330 Sum_probs=112.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++...... .....+.++... +..|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 230 v~l~C~~~g~p~p~v~W~~~~~~~~~~---~~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 300 (388)
T 2v5m_A 230 ISLLCPAQGFPAPSFRWYKFIEGTTRK---QAVVLNDRVKQV------SGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 300 (388)
T ss_dssp EEECCCCEEESCCEEEEEEECTTSSCE---EECCCSSSEEEE------TTEEEESSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEECCCCCCCEEEEEecCCCCccc---ccccccCceecc------cCEEEECcCCHHHCeEEEEEEecCCCceeEEE
Confidence 368999999999999999975321111 011112343332 237999999999999999999986 4556777
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..++.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+... . +.|.|.++..
T Consensus 301 ~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~--i~W~~~g~~i~~~-----------~-----~~L~i~~v~~ 362 (388)
T 2v5m_A 301 VLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT--VSWMKDGKAIGHS-----------E-----SVLRIESVKK 362 (388)
T ss_dssp EEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCE--EEEEETTEECSCC-----------S-----SEEEESSCCG
T ss_pred EEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCe--EEEEECCEECccC-----------C-----CEEEEecCCh
Confidence 88888877666677778899999999999999887765 9999999876311 1 2499999999
Q ss_pred cCCEEEEEEcccCC
Q psy13371 160 KDSGKYSCSPSNAD 173 (212)
Q Consensus 160 ~d~g~y~C~~~n~~ 173 (212)
+|+|.|+|.|.|..
T Consensus 363 ~d~G~Y~C~a~N~~ 376 (388)
T 2v5m_A 363 EDKGMYQCFVRNDR 376 (388)
T ss_dssp GGCEEEEEEEECSS
T ss_pred hhCEEEEEEEEcCC
Confidence 99999999999983
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=148.43 Aligned_cols=150 Identities=16% Similarity=0.281 Sum_probs=114.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.+.+.|+|++. .+.... .... ..+..|.|.+++.+|+|.|+|.+.+. +..+..+
T Consensus 240 v~l~C~~~g~p~~~v~W~~~~~--~~~~~~--------~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 305 (404)
T 3p3y_A 240 LLLECIASGVPTPDIAWYKKGG--DLPSDK--------AKFE----NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTI 305 (404)
T ss_dssp EEEECCBCCSSCCEEEEEETTB--CCCTTT--------EEEE----GGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEECCCCCCcEEEEECCE--ECCCCc--------cccc----ccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEE
Confidence 3689999999999999999874 222111 1111 12347999999999999999999986 5566778
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+....... ......+ .|.|.++..
T Consensus 306 ~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~--v~W~~~g~~~~~~~~~~--~~~~~~~-----~L~i~~v~~ 376 (404)
T 3p3y_A 306 SVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPT--VQWMVNGEPLQSAPPNP--NREVAGD-----TIIFRDTQI 376 (404)
T ss_dssp EEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCE--EEEEETTEEGGGSCCCT--TEEEETT-----EEEESSCCS
T ss_pred EEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCc--eEEEECCEecCCCCCCc--eEEecCC-----EEEEeecCH
Confidence 88888888777777778899999999999999987676 99999998774332111 1112222 499999999
Q ss_pred cCCEEEEEEcccCC
Q psy13371 160 KDSGKYSCSPSNAD 173 (212)
Q Consensus 160 ~d~g~y~C~~~n~~ 173 (212)
+|+|.|+|.|.|..
T Consensus 377 ~d~G~Y~C~a~N~~ 390 (404)
T 3p3y_A 377 SSRAVYQCNTSNEH 390 (404)
T ss_dssp SCCCEEEEEEEETT
T ss_pred HHCEEEEEEEEeCC
Confidence 99999999999983
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=139.78 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=108.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceee---eecceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc-
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHIL---TVGSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV- 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~---~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~- 74 (212)
+.|.|.+.+.|.+.|.|+|++..... ....... ...+|+.... ..+..+|+|.+++.+|+|.|+|.+.+...
T Consensus 19 v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 96 (213)
T 3d9a_L 19 VSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETEDFGMYFCQQSNSWPY 96 (213)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSC
T ss_pred EEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc--CCCEEEEEECCCChhhCEEEEEeeecCCcc
Confidence 36999999999999999986532111 1000001 1136777763 44677999999999999999999998631
Q ss_pred -eeEEEEEEEec---ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEE
Q psy13371 75 -RSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTT 149 (212)
Q Consensus 75 -~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 149 (212)
......|.|.. +|.....++......|+.+.|.|.+.+.+++...+.|++++..+..............++. ...
T Consensus 97 ~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~ 176 (213)
T 3d9a_L 97 TFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS 176 (213)
T ss_dssp EECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEE
T ss_pred eeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEE
Confidence 22234566654 3333333333334478899999999874333346999999987732100000000011111 123
Q ss_pred EEEEEeeeeecCCEEEEEEcccC
Q psy13371 150 SYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 150 ~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.++..+|.|.|+|.|.|+
T Consensus 177 s~L~i~~~~~~d~G~Y~C~a~n~ 199 (213)
T 3d9a_L 177 STLTLTKDEYERHNSYTCEATHK 199 (213)
T ss_dssp EEEEEEHHHHHHCCEEEEEEECT
T ss_pred EEEEEeccccCCCCEEEEEEEEc
Confidence 56999999999999999999997
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=135.10 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=109.3
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCC-C----eEEEEEcccCCCCCEEEEEEecCCC-
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREG-D----EWTLHIKWAQKRDAGVYECQLSTQP- 73 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~----~~~L~i~~~~~~d~G~Y~C~~~~~~- 73 (212)
+.|.|.+. +.|.+.+.|+|++. .+.... ..++.+...... . ...|.|.+++.+|+|.|+|.+.+..
T Consensus 20 v~l~C~~~~~~p~~~v~W~~~g~--~l~~~~-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 92 (195)
T 2c5d_C 20 GTLRCQLQVQGEPPEVHWLRDGQ--ILELAD-----STQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ 92 (195)
T ss_dssp EEEEEEEEEESSCCCCEEEETTE--ECCSCE-----EEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTE
T ss_pred EEEecccccCCCCcEEEEEECCE--EcccCC-----CCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCC
Confidence 36899999 89999999999773 222110 012222211111 1 4689999999999999999999863
Q ss_pred -ceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 74 -VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 74 -~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
..+..+.|.|..+|.....+....+.+|+.+.|.|.+.+.|.|. .+.|++++..+...... .....|
T Consensus 93 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~v~W~~~~~~~~~~~~~-----------~~~~~L 160 (195)
T 2c5d_C 93 TFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPV-DLLWLQDAVPLATAPGH-----------GPQRSL 160 (195)
T ss_dssp EEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCC-EEEEEESSCBSSSSTTS-----------SCCEEE
T ss_pred ceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCC-EEEEEECCEeccCCCCc-----------CCCCeE
Confidence 22344778888887777777778899999999999999887661 39999999876322111 111358
Q ss_pred EEeeeeecCCEEEEEEcccCCe
Q psy13371 153 LIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
.|.++. |+|.|+|.|.|..+
T Consensus 161 ~i~~~~--d~G~Y~C~a~N~~g 180 (195)
T 2c5d_C 161 HVPGLN--KTSSFSCEAHNAKG 180 (195)
T ss_dssp EECCCS--SCEEEEEEEEETTE
T ss_pred EEcccc--cCceEEEEEEcCCC
Confidence 888876 78999999999843
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=133.33 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=107.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecc-eeee----cCCceEEEee-CCCCeEEEEEcccCCCCCEEEEEEecCCCc
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGS-YTYT----SDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYECQLSTQPV 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~----~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 74 (212)
+.|.|.+.+.|.+.+.|+|++...+..... .... ..+|+..... ...+..+|.|.+++.+|+|.|+|.+.+..
T Consensus 13 v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~- 91 (184)
T 2ny1_B 13 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQK- 91 (184)
T ss_dssp EEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTEE-
T ss_pred EEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEEEEEEcCC-
Confidence 368999999999999999987432322111 1111 1234444321 13346679999999999999999999852
Q ss_pred eeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEE
Q psy13371 75 RSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154 (212)
Q Consensus 75 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 154 (212)
..+.|.|... ..++...+.+|+.++|.|.+.+.|.|. +.|++++..+.. .. ..|.|
T Consensus 92 --~~~~l~V~~~----~~~~~~~v~~g~~~~l~C~~~~~p~~~--v~W~~~~~~~~~-----------~~-----~~L~i 147 (184)
T 2ny1_B 92 --EEVQLLVFGL----TANSDTHLLQGQSLTLTLESPPGSSPS--VQCRSPRGKNIQ-----------GG-----KTLSV 147 (184)
T ss_dssp --EEEEEEEEEE----EESSCSEEETTCCEEEEEECCTTCCCE--EEEECTTSCEEE-----------ES-----SEEEE
T ss_pred --CcEEEEEEEe----cCCCCceeecCCCEEEEEEcCCCCCCE--EEEEeCCCcccc-----------Cc-----eEEEE
Confidence 2455666531 123445789999999999998776554 999988765421 11 24999
Q ss_pred eeeeecCCEEEEEEcccC---CeeEEEEEEe
Q psy13371 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182 (212)
Q Consensus 155 ~~~~~~d~g~y~C~~~n~---~~~~~~~~v~ 182 (212)
.++..+|+|.|+|.|.|. ....+.+.|.
T Consensus 148 ~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~ 178 (184)
T 2ny1_B 148 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178 (184)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ecCCcCCCeEEEEEEEECCceEEEEEEEEEE
Confidence 999999999999999987 2334444443
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=136.44 Aligned_cols=160 Identities=23% Similarity=0.331 Sum_probs=110.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee--ecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-C--c
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT--VGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-P--V 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~--~ 74 (212)
+.|.|.+.+.|.+.+.|+|++...... ... .....+.|+.... ..|.|.+++.+|+|.|+|.+.+. + .
T Consensus 19 v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~------~~L~i~~v~~~D~G~Y~C~~~~~~g~~~ 92 (212)
T 1f97_A 19 IKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS------SGITFSSVTRKDNGEYTCMVSEEGGQNY 92 (212)
T ss_dssp EEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET------TEEEESCCCGGGCEEEEEEEEETTSSSE
T ss_pred EEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec------eeEEEcccCcccCeEEEEEEEccCCCcc
Confidence 368999999999999999987531110 000 0111235665541 58999999999999999999874 2 4
Q ss_pred eeEEEEEEEecccceeeCCCceeeeCCCcEEEEeE-EeeCCCCCceEEEEEcCe-EEEeeCCCC-----ceeEEeecCce
Q psy13371 75 RSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCS-IKYSPEPPAYIFWYHHDE-VISYDSSRG-----GVSVITEKGEV 147 (212)
Q Consensus 75 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~p~~~v~W~~~~~-~~~~~~~~~-----~~~~~~~~~~~ 147 (212)
.+..+.|.|..+|.....+....+.+|+.+.|.|. +.+.|.|. +.|++++. .+....... .........
T Consensus 93 ~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~--i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 168 (212)
T 1f97_A 93 GEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSE--YSWFKDGISMLTADAKKTRAFMNSSFTIDPKS-- 168 (212)
T ss_dssp EEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCE--EEEEETTEESBC-----CBSCSSSCEEECTTT--
T ss_pred cEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCE--EEEEeCCcccccccccccccccCceeEecCCC--
Confidence 46677888887765444444457889999999999 67776665 99999998 764322110 111111111
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..|.|.++..+|.|.|+|.|.|.
T Consensus 169 --~~L~i~~~~~~d~G~Y~C~a~n~ 191 (212)
T 1f97_A 169 --GDLIFDPVTAFDSGEYYCQAQNG 191 (212)
T ss_dssp --CCEEESSCCGGGCEEEEEEEECS
T ss_pred --ceEEEEecChhhCcEEEEEEccc
Confidence 24999999999999999999997
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-21 Score=141.64 Aligned_cols=156 Identities=25% Similarity=0.373 Sum_probs=111.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCC-CCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQK-RDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.|.|.+.+.|+|++. .+. +.++............|.|.+++. +|+|.|+|.+.+. +..+..
T Consensus 24 v~l~C~~~g~p~~~i~W~k~g~--~i~--------~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~ 93 (304)
T 2yd9_A 24 ASFVCQATGDPKPRVTWNKKGK--KVN--------SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVH 93 (304)
T ss_dssp EEEEEEEECSSCCEEEEC-----------------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCE
T ss_pred EEEEEEEEEeCCCeEEEEECCE--ECC--------CCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEE
Confidence 4699999999999999999873 222 335554432334457899999998 9999999999986 445667
Q ss_pred EEEEEecc-------cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEE
Q psy13371 79 VNLNVVVP-------TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151 (212)
Q Consensus 79 ~~l~v~~~-------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (212)
+.|.|..+ +.....+....+..|+.+.|.|.+.+.|.|. +.|++++..+....... +......+ .
T Consensus 94 ~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~--v~W~k~~~~~~~~~~~~-~~~~~~~~-----~ 165 (304)
T 2yd9_A 94 AKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPE--ITWFKDFLPVDPSASNG-RIKQLRSG-----A 165 (304)
T ss_dssp EEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCE--EEEEETTEECCGGGGTT-SEEECTTS-----C
T ss_pred EEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCe--EEEEECCEECcCCCCcc-eEEeCCCe-----E
Confidence 77888764 3344456667789999999999998876665 99999998774322111 12222233 3
Q ss_pred EEEeeeeecCCEEEEEEcccCCe
Q psy13371 152 LLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 152 l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
|.|.++..+|+|.|+|.+.|..+
T Consensus 166 L~i~~~~~~d~G~Y~C~a~n~~g 188 (304)
T 2yd9_A 166 LQIESSEETDQGKYECVATNSAG 188 (304)
T ss_dssp EEECSCCGGGCEEEEEEEEETTE
T ss_pred EEEccCCcccCEEEEEEEEeCCC
Confidence 99999999999999999999743
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=134.87 Aligned_cols=181 Identities=16% Similarity=0.199 Sum_probs=117.6
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeeec----------ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTVG----------SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~----------~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|.........- .......+|+.+..+...+..+|+|.+++.+|+|.|+|.
T Consensus 19 v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 98 (253)
T 3uzq_A 19 VRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSGDTAVYYCS 98 (253)
T ss_dssp EEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCcccCEEEEEE
Confidence 46999999854 789999995432111110 001112478988876667788999999999999999999
Q ss_pred ecCCCce--eEEEEEEEec---------------ccceeeCCCceeeeCCCcEEEEeEEeeCCCCC--ceEEEEEcC--e
Q psy13371 69 LSTQPVR--SFFVNLNVVV---------------PTAEILGSPDLHVDEGSTINLTCSIKYSPEPP--AYIFWYHHD--E 127 (212)
Q Consensus 69 ~~~~~~~--~~~~~l~v~~---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~--~~v~W~~~~--~ 127 (212)
+.+.... .....|.|.. ++.....+....+.+|+.++|.|.+.+.+.+. ..+.|+++. .
T Consensus 99 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~ 178 (253)
T 3uzq_A 99 RGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQ 178 (253)
T ss_dssp ECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTS
T ss_pred EeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCC
Confidence 9985311 3445667764 23344556667899999999999998765540 149999852 2
Q ss_pred EEE---eeC-----CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC----CeeEEEEEEee
Q psy13371 128 VIS---YDS-----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA----DVASVYVHVLN 183 (212)
Q Consensus 128 ~~~---~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~----~~~~~~~~v~~ 183 (212)
... ... ....+......+. ...|.|.++..+|+|.|+|.+.|. .+....+.|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~ 244 (253)
T 3uzq_A 179 PPKLLIYRASNLESGIPARFSGSGSRT--DFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKR 244 (253)
T ss_dssp CCEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred CCEEEEEEccccCCccCCceEEeCCCC--EEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcC
Confidence 111 100 0111222222221 246999999999999999999985 34445565543
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=149.18 Aligned_cols=149 Identities=21% Similarity=0.394 Sum_probs=114.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.+.+.|++++. .+... +.++... .+..|.|.+++.+|+|.|+|.+.+. +..+..+
T Consensus 239 ~~l~C~~~~~p~~~~~W~~~~~--~~~~~------~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 305 (403)
T 3laf_A 239 AVLECCVSGYPPPSFTWLRGEE--VIQLR------SKKYSLL-----GGSNLLISNVTDDDSGTYTCVVTYKNENISASA 305 (403)
T ss_dssp EEECCEEEEESCCEEEEEETTE--ECCCS------SSSEEEE-----TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEcCCCCCCeEEEEECCe--eccCC------CceEEEC-----CccEEEEeCCCHHHCEEEEEEEEcCCCceEEEE
Confidence 3689999999999999999773 22211 2233332 2347999999999999999999986 4566777
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+... ........+ .|.|.++..
T Consensus 306 ~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~--v~W~~~g~~~~~~----~~~~~~~~~-----~L~i~~v~~ 374 (403)
T 3laf_A 306 ELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPT--VNWMKNGDVVIPS----DYFQIVGGS-----NLRILGVVK 374 (403)
T ss_dssp EEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCE--EEEEETTEECCCS----SSEEEETTT-----EEEESSCCG
T ss_pred EEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCE--EEEEECCEECCCC----CcEEEecCc-----cEEEecccc
Confidence 88888888777777778899999999999999887775 9999999876321 122222222 499999999
Q ss_pred cCCEEEEEEcccCC
Q psy13371 160 KDSGKYSCSPSNAD 173 (212)
Q Consensus 160 ~d~g~y~C~~~n~~ 173 (212)
+|+|.|+|.|.|..
T Consensus 375 ~d~G~Y~C~a~N~~ 388 (403)
T 3laf_A 375 SDEGFYQCVAENEA 388 (403)
T ss_dssp GGCEEEEEEEEETT
T ss_pred ccCEEEEEEEEcCC
Confidence 99999999999983
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=131.85 Aligned_cols=166 Identities=18% Similarity=0.160 Sum_probs=103.7
Q ss_pred CeeEeeeCCCC-----CceEEEEeeCcceeeeeccee------eecCCceEEEee-CCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL-----PTRVSWIRHRDIHILTVGSYT------YTSDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p-----~~~v~W~~~~~~~~~~~~~~~------~~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.| .+.+.|+|++........+.. ....+|..+..+ ...++.+|.|.+++.+|+|.|+|.
T Consensus 19 v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 98 (222)
T 3sbw_C 19 MTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCM 98 (222)
T ss_dssp EEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGGGCEEEEEE
T ss_pred EEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccccCeEEEEE
Confidence 46999998776 348999997621111111110 011356666532 144678999999999999999999
Q ss_pred ecCCCceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc-CeEEEeeCCCCceeEEeecCce
Q psy13371 69 LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH-DEVISYDSSRGGVSVITEKGEV 147 (212)
Q Consensus 69 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~ 147 (212)
+.+.+.....+.|.|..++..........+..|+.+.|.|.+.+.|.|. +.|+++ +..+..... .......++..
T Consensus 99 ~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~--i~W~~~~g~~~~~~~~--~~~~~~~~~~~ 174 (222)
T 3sbw_C 99 ISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAE--VIWTSSDHQVLSGKTT--TTNSKREEKLF 174 (222)
T ss_dssp EESSSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCE--EEEEETTCCEECCEEE--EEECC----CE
T ss_pred EEeCCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCe--EEEEECCCceecCccc--eEEEcCCCCCE
Confidence 9986556667778887655332222222567899999999999877665 999998 544421100 00011112221
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.......+..+|.|.|+|.|.|.
T Consensus 175 --~~~~~l~v~~~d~g~Y~C~a~n~ 197 (222)
T 3sbw_C 175 --NVTSTLRINTTTNEIFYCTFRRL 197 (222)
T ss_dssp --EEEEEEEEECCTTCEEEEEEEET
T ss_pred --EEEEEEEEeccCCcEEEEEEEeC
Confidence 11222245678999999999998
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=135.07 Aligned_cols=144 Identities=19% Similarity=0.247 Sum_probs=106.6
Q ss_pred CeeEeeeCCCCCce-EEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEE
Q psy13371 1 MLHQRKLKGLLPTR-VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 79 (212)
+.|.|.+.+.|.+. +.|+|++. .+.. ....|.|.+++.+|+|.|+|.+.+. ..+..+
T Consensus 25 v~L~C~~~~~p~~~~v~W~k~g~--~l~~-------------------~~~~L~i~~v~~~D~G~Y~C~a~n~-~~s~~~ 82 (204)
T 3sgj_C 25 VTLKCQGAYSPEDQSTQWFHNES--LISS-------------------QASSYFIDAATVDDSGEYRCQTQLS-TLSDPV 82 (204)
T ss_dssp EEEEEECCSSSSCCCEEEEETTE--EESC-------------------CSSEEEESSCCGGGCEEEEEEETTS-BCCCCE
T ss_pred EEEEEcCCCCCCCcEEEEEECCE--Eccc-------------------CccEEEEecccccCCEEEEEEeCCC-cccccE
Confidence 46999999988775 99999773 2211 1148999999999999999999874 345567
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..++.....+ ...+.+|+.+.|.|.+.+++ |...+.|++++..+.... .. ..|.|.++..
T Consensus 83 ~l~V~~~p~~~~~~-~~~v~~G~~v~L~C~~~~~~-p~~~v~W~k~g~~~~~~~---------~~-----~~L~i~~v~~ 146 (204)
T 3sgj_C 83 QLEVHIGWLLLQAP-RWVFKEEDPIHLRCHSWKNT-ALHKVTYLQNGKGRKYFH---------HN-----SDFYIPKATL 146 (204)
T ss_dssp EEEEECSSEEEECS-CSEEETTCCEEEEEEEGGGC-CCEEEEEEETTEEEEEEE---------EC-----CCEEESSCCG
T ss_pred EEEEecCceEecCC-ceeEeCCCcEEEEEEecCCC-CCceEEEEECCcEeeccc---------CC-----ceEEECcCCc
Confidence 78887766544444 36788999999999997663 334599999998764221 11 1399999999
Q ss_pred cCCEEEEEEcccC----CeeEEEEEEe
Q psy13371 160 KDSGKYSCSPSNA----DVASVYVHVL 182 (212)
Q Consensus 160 ~d~g~y~C~~~n~----~~~~~~~~v~ 182 (212)
+|+|.|+|.|.|. ....+.+.|.
T Consensus 147 ~D~G~Y~C~a~n~~~~~~s~~~~l~V~ 173 (204)
T 3sgj_C 147 KDSGSYFCRGLVGSKNVSSETVQITIT 173 (204)
T ss_dssp GGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred ccCEEEEEEEEeCCCceecCcEEEEEe
Confidence 9999999999994 2334455554
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-22 Score=137.19 Aligned_cols=170 Identities=14% Similarity=0.159 Sum_probs=109.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceee---eecceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc-
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHIL---TVGSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV- 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~---~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~- 74 (212)
+.|.|.+.+.|.+.|.|+|++..... ....... ...+|+.+.. ..+..+|+|.+++.+|+|.|.|.+.+...
T Consensus 18 v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 95 (210)
T 1lk3_L 18 LTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEADDTAIYFCQQSWNGPL 95 (210)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSC
T ss_pred EEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe--cCCEEEEEECCCCHHHCeEEEEEEEcCCCc
Confidence 46999999999899999996421111 1100000 1136777763 44677999999999999999999998531
Q ss_pred -eeEEEEEEEec---ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEE
Q psy13371 75 -RSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTT 149 (212)
Q Consensus 75 -~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 149 (212)
......|.|.. +|.....++......|+.++|.|.+.+.+++...+.|++++..+..............++. ...
T Consensus 96 ~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (210)
T 1lk3_L 96 TFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMS 175 (210)
T ss_dssp EECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEE
T ss_pred eeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEE
Confidence 22234566654 2333333333334579999999999875434346999999987631100000000111221 233
Q ss_pred EEEEEeeeeecCCEEEEEEcccC
Q psy13371 150 SYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 150 ~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.++..+|.|.|+|.|.|+
T Consensus 176 s~L~i~~~~~~d~G~Y~C~a~n~ 198 (210)
T 1lk3_L 176 STLSLTKADYESHNLYTCEVVHK 198 (210)
T ss_dssp EEEEEEHHHHHTCCEEEEEEECT
T ss_pred EEEEEChHHhccCCcEEEEEEec
Confidence 56999999999999999999997
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=137.40 Aligned_cols=170 Identities=14% Similarity=0.237 Sum_probs=107.3
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcce----eeeecc--e-ee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIH----ILTVGS--Y-TY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~----~~~~~~--~-~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+.+. |.+.+.|+|..... +..... . .. ...+|+.+.. ..++++|+|.+++.+|+|.|.|.+.
T Consensus 18 v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~ 95 (218)
T 3s96_B 18 AKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLSISNIQPEDEAIYICGVG 95 (218)
T ss_dssp EEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec--CCceEEEEEccCCcccCEEEEEEEe
Confidence 4699999999 99999999954211 111110 0 00 1135888763 5567899999999999999999998
Q ss_pred CCC------ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeE
Q psy13371 71 TQP------VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV 140 (212)
Q Consensus 71 ~~~------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~ 140 (212)
+.. .......|.|.. +|.....+.......|+.+.|.|.+.+.+++...+.|++++..+....... ..
T Consensus 96 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~--~~ 173 (218)
T 3s96_B 96 DTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTS--NP 173 (218)
T ss_dssp EEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC-----------
T ss_pred cCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecC--cc
Confidence 752 223345677763 333333333344556789999999987433333699999998774321110 11
Q ss_pred EeecCce-EEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 141 ITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 141 ~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
...++.. ..+.|.|.....+|.|.|+|.|.|+..
T Consensus 174 ~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~ 208 (218)
T 3s96_B 174 TKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGD 208 (218)
T ss_dssp -----CEEEEEEEEEEHHHHHTCSCEEEEEEETTE
T ss_pred cccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCC
Confidence 1112222 234588888888899999999999853
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=142.28 Aligned_cols=155 Identities=21% Similarity=0.378 Sum_probs=109.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC---ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP---VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~ 77 (212)
+.|.|.+.+.|.+.+.|++++.. +.. . .+.++... .+..|.|.+++.+|+|.|+|.+.+.. ....
T Consensus 118 v~l~C~~~~~p~~~v~W~~~~~~-~~~-~-----~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 185 (291)
T 1qz1_A 118 AVIVCDVVSSLPPTIIWKHKGRD-VIL-K-----KDVRFIVL-----SNNYLQIRGIKKTDEGTYRCEGRILARGEINFK 185 (291)
T ss_dssp EEECCEEECSSCCEEEEEETTSC-SST-T-----CCTTEEEC-----TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEE
T ss_pred EEEEEEeccCCCCEEEEEECCEE-ccc-C-----CCceEEEc-----cCCcEEEccCccccCeEEEEEEEecCCCceeeE
Confidence 36899999999999999998742 211 1 12344333 23379999999999999999998742 2334
Q ss_pred EEEEEEecccceeeCCC--ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe
Q psy13371 78 FVNLNVVVPTAEILGSP--DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 78 ~~~l~v~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.+.+.|..+|.....+. ...+..|+.+.|.|.+.+.|.|. +.|++++..+........+......+ +.|.|.
T Consensus 186 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~--i~W~~~g~~~~~~~~~~~~~~~~~~~----~~L~i~ 259 (291)
T 1qz1_A 186 DIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPT--MSWTKDGEPIENEEEDDEKHIFSDDS----SELTIR 259 (291)
T ss_dssp EEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCE--EEEEETTEECCCC--CCSSEEECTTS----CEEEEC
T ss_pred EEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCc--EEEEECCEECcCCCCCCcceEEcCCC----cEEEEE
Confidence 56666766665444332 44678899999999999887766 99999998774332111122222222 359999
Q ss_pred eeeecCCEEEEEEcccCC
Q psy13371 156 QAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~~ 173 (212)
++..+|+|.|+|.|.|..
T Consensus 260 ~v~~~d~G~Y~C~a~N~~ 277 (291)
T 1qz1_A 260 NVDKNDEAEYVCIAENKA 277 (291)
T ss_dssp SCCGGGCEEEEEEEEETT
T ss_pred ecChhcCEEEEEEEEeCC
Confidence 999999999999999983
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-22 Score=138.77 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=111.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee---e-c-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc-
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT---V-G-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV- 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~---~-~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~- 74 (212)
+.|.|.+. |.+.+.|+|........ . . .......+|+.+.. ..++++|+|.+++.+|+|.|.|.+.+...
T Consensus 18 v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 93 (211)
T 3tv3_L 18 ITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK--SGNTASLTVSGLQTDDEAVYYCGSLVGNWD 93 (211)
T ss_dssp EEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEEESCCGGGCEEEEEEEEETTTE
T ss_pred EEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc--cCCEEEEEECCCChhHCEEEEEEEecCCCc
Confidence 46999998 88999999964211111 0 0 00001246787763 55678999999999999999999988532
Q ss_pred --eeEEEEEEEe----cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-e
Q psy13371 75 --RSFFVNLNVV----VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-V 147 (212)
Q Consensus 75 --~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~ 147 (212)
......|.|. .+|.....+.......|+.+.|.|.+.+.++|.+.+.|++++..+...... .......++. .
T Consensus 94 ~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~-~~~~~~~~~~~~ 172 (211)
T 3tv3_L 94 VIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET-TTPSKQSNNKYA 172 (211)
T ss_dssp EEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE-CCCEECTTSSEE
T ss_pred eeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCccc-CCceECCCCCEE
Confidence 3445677776 344344444444445799999999999865555679999999877321000 0111122222 2
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+.|.|.+...+|.|.|+|.|.|+.
T Consensus 173 ~~s~L~i~~~~~~d~g~Y~C~v~~~~ 198 (211)
T 3tv3_L 173 ASSYLSLTPEQWKSHRSYSCQVTHEG 198 (211)
T ss_dssp EEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred EEEEEEEcHHHhCCCCeEEEEEEECC
Confidence 33568898888899999999999985
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=138.82 Aligned_cols=170 Identities=13% Similarity=0.151 Sum_probs=111.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee---eee-cc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI---LTV-GS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~---~~~-~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-- 73 (212)
+.|.|.+.+.|.+.+.|+|...... ... .. .....++|+.+. ...++++|+|.+++.+|+|.|+|.+.+..
T Consensus 19 v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 96 (213)
T 3r06_A 19 VTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGS--GSGRDSSFTISSLESEDIGSYYCQQYYNYPW 96 (213)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCCGGGCSEEEEEECSSSSC
T ss_pred EEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEe--ccCCEEEEEECCCCcccCEEEEEecccCCce
Confidence 4699999999999999998542111 111 11 011124688776 34567899999999999999999998752
Q ss_pred ceeEEEEEEEe---cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEE
Q psy13371 74 VRSFFVNLNVV---VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTT 149 (212)
Q Consensus 74 ~~~~~~~l~v~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 149 (212)
.......|.|. .+|.....+.......|+.+.|.|.+.+.+++...+.|++++..+..............++. ...
T Consensus 97 ~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~ 176 (213)
T 3r06_A 97 TFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLS 176 (213)
T ss_dssp EECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEE
T ss_pred EEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEE
Confidence 23344566662 33434444444455678889999999987654567999999987732100000001111222 123
Q ss_pred EEEEEeeeeecCCEEEEEEcccC
Q psy13371 150 SYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 150 ~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.+.....+|.|.|+|.+.|+
T Consensus 177 s~l~i~~~~~~d~g~YtC~v~n~ 199 (213)
T 3r06_A 177 STLSLTKADYERHNLYTCEVTHK 199 (213)
T ss_dssp EEEEEEHHHHHTCCEEEEEEEET
T ss_pred EEEEeCHHHhccCCeEEEEEEec
Confidence 45888888888999999999997
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=138.67 Aligned_cols=165 Identities=22% Similarity=0.298 Sum_probs=116.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.+.+.|+|++. .+.. .+.++.... ...+...|.|.+++.+|+|.|+|.+.+. +..+..+
T Consensus 22 v~l~C~~~g~p~~~v~W~~~~~-~~~~-------~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 92 (305)
T 2nzi_A 22 ATLVCKVTGHPKPIVKWYRQGK-EIIA-------DGLKYRIQE-FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 92 (305)
T ss_dssp EEEEEEEECSSCCEEEEEETTE-ECCC-------CSSSEEEEE-ETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeCCCCCeEEEEECCE-Eccc-------CCCeEEEEE-CCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceE
Confidence 3689999999999999999773 2221 123444432 3446679999999999999999999986 3455667
Q ss_pred EEEEeccccee-----eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEE
Q psy13371 80 NLNVVVPTAEI-----LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154 (212)
Q Consensus 80 ~l~v~~~~~~~-----~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 154 (212)
.|.|..++... ..+....+..|+.+.|.|.+.+.|.|. +.|++++..+.. ..+......+. ...|.|
T Consensus 93 ~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~--i~W~~~~~~~~~----~~~~~~~~~~~--~~~l~i 164 (305)
T 2nzi_A 93 SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPV--ITWQKGQDLIDN----NGHYQVIVTRS--FTSLVF 164 (305)
T ss_dssp EEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCE--EEEEESSSBCCS----SSSCEEEECSS--EEEEEE
T ss_pred EEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCE--EEEEECCEECCC----CCcEEEEEcCC--ceEEEE
Confidence 77776554322 223456788999999999999887775 999999877632 11222222211 245899
Q ss_pred ee-eeecCCEEEEEEcccCC---eeEEEEEEe
Q psy13371 155 QQ-AELKDSGKYSCSPSNAD---VASVYVHVL 182 (212)
Q Consensus 155 ~~-~~~~d~g~y~C~~~n~~---~~~~~~~v~ 182 (212)
.+ +..+|.|.|+|.|.|.. ...+.+.+.
T Consensus 165 ~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~ 196 (305)
T 2nzi_A 165 PNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (305)
T ss_dssp TTCCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ecCCccCccEEEEEEEEeCCCceeeEEEEEEe
Confidence 88 99999999999999983 333444443
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=128.94 Aligned_cols=148 Identities=18% Similarity=0.322 Sum_probs=104.3
Q ss_pred CeeEeeeCCCCCc--eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEE
Q psy13371 1 MLHQRKLKGLLPT--RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 78 (212)
+.|.|.+.+.|.| .+.|+|++ ..+.... .......|.|. +.+|+|.|+|.+.+. ....
T Consensus 16 v~l~C~~~~~~~p~~~~~W~k~~--~~l~~~~--------------~~~~~~~l~i~--~~~d~G~Y~C~~~n~--~~~~ 75 (184)
T 3b5h_A 16 ILLTCSLNDSATEVTGHRWLKGG--VVLKEDA--------------LPGQKTEFKVD--SDDQWGEYSCVFLPE--PMGT 75 (184)
T ss_dssp EEEEEEEESCSSCCCEEEEESSS--EEEECTT--------------CCCSEEEEEEC--GGGCCEEEEEEEEST--TSCE
T ss_pred EEEEEECCCCCCCceEEEEEeCC--EEeeccc--------------ccCCcEEEEEe--chhhCeEEEEEEECC--cCcE
Confidence 4699999988777 99999976 3332111 11123456666 689999999999974 3456
Q ss_pred EEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCC-CCCceEEEEE---cCeEEEeeCCCCceeEEeecCceEEEEEEE
Q psy13371 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSP-EPPAYIFWYH---HDEVISYDSSRGGVSVITEKGEVTTSYLLI 154 (212)
Q Consensus 79 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~p~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 154 (212)
+.|.|..+|.....+....+.+|+.+.|.|.+.+.| .| .+.|++ ++........ ..+......+. .+.|.|
T Consensus 76 ~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~L~i 150 (184)
T 3b5h_A 76 ANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVT--DWAWYKITDSEDKALMNGS-ESRFFVSSSQG--RSELHI 150 (184)
T ss_dssp EEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCC--EEEEEECCSSSCEECCTTG-GGTEEEEEETT--EEEEEE
T ss_pred EEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCC--eEEEEEcCCCCCEEeecCC-CCEEEEEecCC--eeEEEE
Confidence 678888877776666667789999999999998876 34 499999 4544322111 12233333332 245999
Q ss_pred eeee-ecCCEEEEEEcccCC
Q psy13371 155 QQAE-LKDSGKYSCSPSNAD 173 (212)
Q Consensus 155 ~~~~-~~d~g~y~C~~~n~~ 173 (212)
.++. .+|.|.|+|.|.|..
T Consensus 151 ~~v~~~~d~G~Y~C~a~N~~ 170 (184)
T 3b5h_A 151 ENLNMEADPGQYRCNGTSSK 170 (184)
T ss_dssp CSCCTTTSSEEEEEEEEETT
T ss_pred eeccccccCceEEEEEEeCC
Confidence 9999 899999999999983
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=130.47 Aligned_cols=134 Identities=21% Similarity=0.264 Sum_probs=101.5
Q ss_pred CeeEeeeCCCCCce-EEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEE
Q psy13371 1 MLHQRKLKGLLPTR-VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 79 (212)
+.|.|.+.+.|.+. +.|+|++. .+. .....|.|.+++.+|+|.|+|.+.+.. .+..+
T Consensus 25 v~L~C~~~~~p~~~~~~W~~~~~--~~~-------------------~~~~~L~i~~~~~~d~G~Y~C~~~n~~-~s~~~ 82 (175)
T 1fnl_A 25 VTLKCQGAYSPEDNSTQWFHNES--LIS-------------------SQASSYFIDAATVNDSGEYRCQTNLST-LSDPV 82 (175)
T ss_dssp EEEEEECCCBTTBCCCEEEETTE--EEE-------------------SSCSEEEESSCCGGGCEEEEEECSSSC-CCCCE
T ss_pred EEEEeeCCCCCCCcceEEEECCE--Ecc-------------------CCceEEEEeCCCcccCEEEEEEeeCCc-ccccE
Confidence 36999999998776 78999773 221 023389999999999999999999843 35566
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..++..... ....+.+|+.+.|.|.+.+.+.+ ..+.|++++..+.... .. ..|.|.++..
T Consensus 83 ~l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~k~g~~~~~~~---------~~-----~~L~i~~v~~ 146 (175)
T 1fnl_A 83 QLEVHIGWLLLQA-PRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKDRKYFH---------HN-----SDFHIPKATL 146 (175)
T ss_dssp EEEEECSSEEEEC-SCSEEETTCCEEEEEEECTTCCC-EEEEEEETTEEEEEEE---------EC-----CCEEESSCCG
T ss_pred EEEEeCCCceeeC-CCceecCCCCEEEEEEcCCCCCc-eEEEEEECCeEccCCC---------CC-----CEEEEcccCh
Confidence 7777755443333 44678899999999999876543 4599999998773221 11 2399999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|+|.|.|.
T Consensus 147 ~d~G~Y~C~a~n~ 159 (175)
T 1fnl_A 147 KDSGSYFCRGLVG 159 (175)
T ss_dssp GGCEEEEEEEEET
T ss_pred hhCeEEEEEEEcC
Confidence 9999999999996
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=137.55 Aligned_cols=169 Identities=17% Similarity=0.255 Sum_probs=109.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc-
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV- 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~- 74 (212)
+.|.|.+.+.|.+.+.|+|...... ..... .....++|+... ...+.++|+|.+++.+|+|.|.|.+.+...
T Consensus 22 v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~ 99 (250)
T 3esu_F 22 VTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGS--GSGTDYSLTISNLEQEDIGTYFCQQGNTLPW 99 (250)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCCGGGCEEEEEEECSSSSC
T ss_pred EEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEe--CCCCEEEEEEccCChhhCEEEEEEEeeCCCc
Confidence 4699999999999999999653111 11111 111124677665 345678999999999999999999987521
Q ss_pred -eeEEEEEEEecc-------------------cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEee
Q psy13371 75 -RSFFVNLNVVVP-------------------TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISYD 132 (212)
Q Consensus 75 -~~~~~~l~v~~~-------------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~~ 132 (212)
......|.|..+ +..+..+....+.+|+.++|.|.+.+.+.+...+.|+++ +..+...
T Consensus 100 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~ 179 (250)
T 3esu_F 100 TFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWI 179 (250)
T ss_dssp EECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEE
T ss_pred eECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEE
Confidence 223345666543 233445566788999999999999876633445999987 4322110
Q ss_pred -------------CCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 133 -------------SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 133 -------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
.....+.....++.....+|.|.++..+|+|.|.|.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 180 GRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 001122333322222334699999999999999999987
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=135.76 Aligned_cols=135 Identities=20% Similarity=0.353 Sum_probs=104.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~ 78 (212)
+.|.|.+.+.|.+.+.|+|++. .+. ......|.|.+++.+|+|.|+|.+.+.. ..+..
T Consensus 36 v~L~C~~~~~p~~~v~W~~~~~--~~~------------------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~ 95 (218)
T 3k0w_A 36 VKLCCRATGHPFVQYQWFKMNK--EIP------------------NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQW 95 (218)
T ss_dssp EEEECEETTTTSSEEEEEETTE--ECT------------------TCCSSEEEETTCCGGGCEEEEEEEECTTCCEECCC
T ss_pred EEEEeeecCCCCCEEEEEECCE--ECC------------------CCCCCEEEEccCChhhCeEeEEEEEcCCCCceeeE
Confidence 3689999999999999999773 221 1123479999999999999999999862 22455
Q ss_pred EEEEEecc---------------cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEee
Q psy13371 79 VNLNVVVP---------------TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143 (212)
Q Consensus 79 ~~l~v~~~---------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 143 (212)
+.|.|... +.....+....+..|+.+.|.|.+.+.|.|. +.|++++..+....
T Consensus 96 ~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~--v~W~~~~~~~~~~~---------- 163 (218)
T 3k0w_A 96 SQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH--YQWFKNELPLTHET---------- 163 (218)
T ss_dssp EEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCE--EEEEETTEECTTCC----------
T ss_pred EEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCe--EEEEECCEECCCCC----------
Confidence 67777654 3344455667889999999999998876665 99999998763211
Q ss_pred cCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 144 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
. ..|.|.++..+|.|.|+|.|.|.
T Consensus 164 ~-----~~L~i~~v~~~d~G~Y~C~a~n~ 187 (218)
T 3k0w_A 164 K-----KLYMVPYVDLEHQGTYWCHVYND 187 (218)
T ss_dssp S-----SEEEESSCCGGGCEEEEEEEECS
T ss_pred C-----CEEEEeecChhcCEEEEEEEEcC
Confidence 1 14999999999999999999996
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=136.47 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=109.9
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcc-------eeeeecceeee-----cCCceEEEe-eCCCCeEEEEEcccCCCCCE
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDI-------HILTVGSYTYT-----SDQRFSAIH-RREGDEWTLHIKWAQKRDAG 63 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~-------~~~~~~~~~~~-----~~~r~~~~~-~~~~~~~~L~i~~~~~~d~G 63 (212)
+.|.|.+.+.+ .+.+.|+|.+.. .....++.... ..+|+.+.. +...++.+|.|.+++.+|+|
T Consensus 18 v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G 97 (214)
T 3jz7_A 18 AYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIG 97 (214)
T ss_dssp EEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEECSCCGGGCE
T ss_pred EEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEccCChhhCe
Confidence 46899999987 579999985421 11111222221 145776653 12345678999999999999
Q ss_pred EEEEEecCC-CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEE-eeCCCCCceEEEEEcCeEEEeeCCCCceeEE
Q psy13371 64 VYECQLSTQ-PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141 (212)
Q Consensus 64 ~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~ 141 (212)
.|+|.+.+. +..+..+.|.|..++.....+....+..|+.+.|.|.+ .+.|.|. +.|++++........ ....
T Consensus 98 ~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~--v~W~~~~~~~~~~~~---~~~~ 172 (214)
T 3jz7_A 98 TYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQ--FEWQKLSDSQTMPTP---WLAE 172 (214)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCE--EEEEECSTTCCCCGG---GGGG
T ss_pred EEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCE--EEEEECCCCCccCcc---ceec
Confidence 999999885 34566778888877654433333457889999999999 6666555 999995432211100 0011
Q ss_pred eecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 142 TEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 142 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+ .|.|.++..+|+|.|+|.|.|.
T Consensus 173 ~~~~-----~L~i~~~~~~d~G~Y~C~a~N~ 198 (214)
T 3jz7_A 173 MTSP-----VISVKNASSEYSGTYSCTVQNR 198 (214)
T ss_dssp TTSS-----EEEECSCCGGGCEEEEEEEECS
T ss_pred cCCC-----EEEEecCCHHHCEEEEEEEEcC
Confidence 1111 4999999999999999999998
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-21 Score=145.43 Aligned_cols=152 Identities=18% Similarity=0.308 Sum_probs=113.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc-eeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV-RSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~-~~~~ 78 (212)
+.|.|.+.+.|.+.+.|+|++. .+.... ..++... .......|.|.+++.+|+|.|+|.+.+. +. ....
T Consensus 230 v~l~C~~~g~p~~~i~W~~~g~-~~~~~~------~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 300 (395)
T 1bih_A 230 TMIYCMYGSNPMGYPNYFKNGK-DVNGNP------EDRITRH--NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS 300 (395)
T ss_dssp EEEEEEEECSSCCCCEEEETTE-ECCCCT------TSSEESC--SSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEE
T ss_pred EEEEEEeccCCCCeEEEEECCE-EcCCCC------ceeEEEE--ecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEE
Confidence 3689999999999999999873 222111 1222221 2223347999999999999999999986 33 3347
Q ss_pred EEEEEecccceeeCCCc-eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 79 VNLNVVVPTAEILGSPD-LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 79 ~~l~v~~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+.|.|..+|.....+.. ..+.+|+.+.|.|.+.+.|.|. +.|++++..+.. .+... ..+ .|.|.++
T Consensus 301 ~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~--v~W~~~g~~~~~-----~~~~~-~~~-----~L~i~~~ 367 (395)
T 1bih_A 301 LKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN--VVWSHNAKPLSG-----GRATV-TDS-----GLVIKGV 367 (395)
T ss_dssp EEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCC--CEEEETTEECCS-----SSEEE-ETT-----EEEESSC
T ss_pred EEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCe--eEEEECCEECCC-----CceEE-ECC-----EEEEeeC
Confidence 78888888777666666 7789999999999999988777 999999987631 12222 222 4999999
Q ss_pred eecCCEEEEEEcccCCe
Q psy13371 158 ELKDSGKYSCSPSNADV 174 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~~~ 174 (212)
..+|+|.|+|.|.|..+
T Consensus 368 ~~~d~G~Y~C~a~N~~G 384 (395)
T 1bih_A 368 KNGDKGYYGCRATNEHG 384 (395)
T ss_dssp CSTTCEEEEEEEEETTE
T ss_pred CcccCEEEEEEEEccCC
Confidence 99999999999999843
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=137.52 Aligned_cols=155 Identities=21% Similarity=0.358 Sum_probs=115.1
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeE
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~ 77 (212)
+.|.|.+.+.| .+.+.|+|.++..+.. ...|+.+.. .......|.|.+++.+|+|.|+|.+.+.. ..+.
T Consensus 20 v~l~C~~~~~~~~~~i~W~~~~g~~~~~-------~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~ 91 (291)
T 1qz1_A 20 KFFLCQVAGDAKDKDISWFSPNGEKLSP-------NQQRISVVW-NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA 91 (291)
T ss_dssp EEEEEEESSCCSCCEEEEECTTSCBCCS-------SCSSEEEEE-EETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEE
T ss_pred EEEEEEeCCCCCCcEeEEECCCCeECcc-------CCceEEEEE-cCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEE
Confidence 46999999986 7999999944323321 134555543 23456789999999999999999999863 3456
Q ss_pred EEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 78 FVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 78 ~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
.+.|.|..++.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+.... ..+......+ .|.|.++
T Consensus 92 ~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~--v~W~~~~~~~~~~~--~~~~~~~~~~-----~L~i~~~ 162 (291)
T 1qz1_A 92 TVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPT--IIWKHKGRDVILKK--DVRFIVLSNN-----YLQIRGI 162 (291)
T ss_dssp EEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCE--EEEEETTSCSSTTC--CTTEEECTTS-----CEEETTC
T ss_pred EEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCE--EEEEECCEEcccCC--CceEEEccCC-----cEEEccC
Confidence 6777777777666677778899999999999999876665 99999987663221 1122223333 3999999
Q ss_pred eecCCEEEEEEcccC
Q psy13371 158 ELKDSGKYSCSPSNA 172 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~ 172 (212)
..+|.|.|+|.+.|.
T Consensus 163 ~~~d~G~Y~C~a~n~ 177 (291)
T 1qz1_A 163 KKTDEGTYRCEGRIL 177 (291)
T ss_dssp CGGGCEEEEEEEEEG
T ss_pred ccccCeEEEEEEEec
Confidence 999999999999985
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-21 Score=132.40 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=105.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++.....+ . ++.. .......|.|.+++.+|+|.|.|.+.+. +..+..+
T Consensus 19 v~L~C~~~g~P~p~i~W~~~~~~~~---~-------~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~ 84 (202)
T 1vca_A 19 VSLTCSTTGCESPFFSWRTQIDSPL---N-------GKVT----NEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGI 84 (202)
T ss_dssp EEEEEEEESCSSCEEEEEETTCCCC---S-------SEEE----EETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred EEEEEeecCCCCCeEEEECCCCCCc---c-------ceEE----EcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEE
Confidence 4699999999999999988432111 0 1111 1124557999999999999999999986 3456677
Q ss_pred EEEEecccce-eeCCCceeeeCCCcEEEEeEEeeCCC-CCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 80 NLNVVVPTAE-ILGSPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 80 ~l~v~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
.|.|..+|.. ...+. ..+.+|+.++|.|.+.+.++ +...+.|++++..+......... .........+.|.|...
T Consensus 85 ~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~--~~~~~~~~~~~l~i~~~ 161 (202)
T 1vca_A 85 QVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA--DRKSLETKSLEVTFTPV 161 (202)
T ss_dssp EEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCC--SSCCCEEEEEEEEECCC
T ss_pred EEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccccccc--CcCcceEEEEEEEEEee
Confidence 8888776532 22222 56889999999999987643 23458999999877533211000 00001122345778888
Q ss_pred eecCCEEEEEEcccC
Q psy13371 158 ELKDSGKYSCSPSNA 172 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~ 172 (212)
..+|.|.|+|.|.|.
T Consensus 162 ~~d~~g~ytC~A~n~ 176 (202)
T 1vca_A 162 IEDIGKVLVCRAKLH 176 (202)
T ss_dssp GGGTTCEEEEEEEEC
T ss_pred eccCCCeEEEEEEcc
Confidence 888999999999986
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-21 Score=137.52 Aligned_cols=170 Identities=19% Similarity=0.271 Sum_probs=110.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeeccee-eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc-
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSYT-YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV- 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~- 74 (212)
+.|.|.+.+.|.+.+.|+|++... +....... ...++|+.+.. ..+..+|+|.+++.+|+|.|.|.+.+...
T Consensus 30 v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~ 107 (276)
T 3auv_A 30 VTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISSLQPEDFATYYCQQHYTTPP 107 (276)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSC
T ss_pred EEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec--cCCeEEEEEccCChhhCEEEEEEEecCCcc
Confidence 369999999999999999976321 11111100 01246888763 45677999999999999999999988521
Q ss_pred -eeEEEEEEEeccc--------------ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEE---Eee--
Q psy13371 75 -RSFFVNLNVVVPT--------------AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVI---SYD-- 132 (212)
Q Consensus 75 -~~~~~~l~v~~~~--------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~---~~~-- 132 (212)
......|.|..++ ..+..+....+.+|+.++|.|.+.+.+.+...+.|++++ ... ...
T Consensus 108 ~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~ 187 (276)
T 3auv_A 108 TFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITP 187 (276)
T ss_dssp CCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECG
T ss_pred cccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEec
Confidence 2333556665432 223445567889999999999998765323459999863 221 100
Q ss_pred --------CCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 133 --------SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 133 --------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.....+.....++......|.|.++..+|+|.|+|.+.|.
T Consensus 188 ~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 188 AGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp GGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred cCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence 1112233333222122346999999999999999999986
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=133.77 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=103.2
Q ss_pred CeeEeeeCCCCC-----ceEEEEeeCcceeeeecceeeecCCceEEEee-CCCCeEEEEEcccCCCCCEEEEEEecCCC-
Q psy13371 1 MLHQRKLKGLLP-----TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYECQLSTQP- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~-----~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~- 73 (212)
+.|.|.+.+.|. +.+.|+|.+..... .++|+.+..+ ...++.+|.|.+++.+|+|.|+|.+.+..
T Consensus 20 v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~--------~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 91 (202)
T 3bp6_B 20 VSLECDFDRRECTELEGIRASLQKVENDTSL--------QSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAA 91 (202)
T ss_dssp EEEEEEECTTC---CTTEEEEEEECC--CCC--------BCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred EEEEEEecCCCCCCccceEEEEEcCCCcccc--------cCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCC
Confidence 469999999886 89999994432211 1345555422 12356899999999999999999999863
Q ss_pred ceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEE
Q psy13371 74 VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 74 ~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (212)
..+..+.|.|..++..... ....+.+|+.+.|.|.+.+.|.|. +.|++++..+.. ......++. ...+.
T Consensus 92 ~~~~~~~l~V~~~~~~p~~-~~~~~~~g~~v~l~C~~~g~P~p~--v~W~~~~~~~~~------~~~~~~~~~--~~~~~ 160 (202)
T 3bp6_B 92 WDYKYLTVKVKASYMRIDT-RILEVPGTGEVQLTCQARGYPLAE--VSWQNVSVPANT------SHIRTPEGL--YQVTS 160 (202)
T ss_dssp EEEEEEEEEEEBCCCCEEE-EEEECTTTCCEEEEEEEEEBSCCE--EEETTCCSCCEE------EEEECTTSC--EEEEE
T ss_pred cceEEEEEEecCCCCcccE-EEEecCCCCeEEEEEEccccCCce--EEEEeCCCCccC------ceeeCCCCC--EEEEE
Confidence 3466677777654321111 012456799999999998877665 999987764421 111122222 23467
Q ss_pred EeeeeecCCEEEEEEcccC
Q psy13371 154 IQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~ 172 (212)
+.++..+|.|.|+|.|.|.
T Consensus 161 i~~v~~~d~G~Y~C~a~N~ 179 (202)
T 3bp6_B 161 VLRLKPQPSRNFSCMFWNA 179 (202)
T ss_dssp EEEECCCTTCCEEEEEEET
T ss_pred EEEEEcCCCCEEEEEEEcC
Confidence 7788899999999999998
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-21 Score=134.70 Aligned_cols=165 Identities=15% Similarity=0.119 Sum_probs=99.0
Q ss_pred CeeEeeeCCCCCc---eEEEEeeCcceeeee--cceee------ecCCceEEEee-CCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLLPT---RVSWIRHRDIHILTV--GSYTY------TSDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p~~---~v~W~~~~~~~~~~~--~~~~~------~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+.+ .|.|+|++....... ++... ....|...... ...++++|+|.+++.+|+|.|+|.
T Consensus 22 v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 101 (226)
T 4f80_A 22 ADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCY 101 (226)
T ss_dssp EEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGGGCEEEEEE
T ss_pred EEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchHHCeeEEEE
Confidence 3699999876544 799999775332211 11111 11245555432 244678999999999999999999
Q ss_pred ecCCCceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeecCce
Q psy13371 69 LSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147 (212)
Q Consensus 69 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (212)
+.+.. ......+.+..++.....+....+.+|+.+.+.|.+.+. |.|. +.|++++........ .......++..
T Consensus 102 a~n~~-~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~--i~W~k~~~~~~~~~~--~~~~~~~~g~~ 176 (226)
T 4f80_A 102 FQDGD-FYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQ--IQWSNNKGENIPTVE--APVVADGVGLY 176 (226)
T ss_dssp EEETT-EEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCE--EEEECTTSCBCCCEE--CCCEECTTSCE
T ss_pred EECCC-cEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCE--EEEEECCceEcCCCc--eEEEECCCCcE
Confidence 99863 233344455444433333344567889999999999874 5555 999986543311111 11122222321
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+.+.++..+|.|.|+|.|.|+
T Consensus 177 --~v~s~l~v~~~d~G~YtC~a~N~ 199 (226)
T 4f80_A 177 --AVAASVIMRGSSGEGVSCTIRSS 199 (226)
T ss_dssp --EEEEEEEECC----CEEEEEEET
T ss_pred --EEEEEEEechhcCcEEEEEEEeC
Confidence 22444466789999999999998
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-20 Score=133.33 Aligned_cols=170 Identities=19% Similarity=0.233 Sum_probs=108.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc-
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV- 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~- 74 (212)
+.|.|.+.+.|.+.+.|+|+.... +...... ....++|+.+.. ..+..+|+|.+++.+|+|.|.|.+.+...
T Consensus 19 v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~ 96 (242)
T 2znx_A 19 VSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETEDFGMYFCQQSNSXPY 96 (242)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSSSSC
T ss_pred EEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec--CCCEEEEEECCCChHHCEEEEEeEecCCce
Confidence 369999999999999999965311 1111100 001246888763 44678999999999999999999998632
Q ss_pred -eeEEEEEEEecccc-------------eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE---eeCC-
Q psy13371 75 -RSFFVNLNVVVPTA-------------EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS---YDSS- 134 (212)
Q Consensus 75 -~~~~~~l~v~~~~~-------------~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~---~~~~- 134 (212)
......|.|..++. .+..+....+.+|+.++|.|.+.+.+.+...+.|+++. ..+. ....
T Consensus 97 ~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~ 176 (242)
T 2znx_A 97 TFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYS 176 (242)
T ss_dssp EECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTT
T ss_pred EECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecC
Confidence 22345677765432 23334445689999999999998765323349999853 2221 1100
Q ss_pred --------CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 135 --------RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 135 --------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+.....+.......|.|.+++.+|+|.|+|.+.|.
T Consensus 177 g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 177 GSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp SCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred CccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 11222222222122346999999999999999999985
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-21 Score=145.37 Aligned_cols=144 Identities=20% Similarity=0.309 Sum_probs=112.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.+.+.|+|++.. +.. + .......|.|.+++.+|+|.|+|.+.+. +.....+
T Consensus 225 v~l~C~~~g~p~~~i~W~~~~~~--~~~---------~------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 287 (382)
T 1cs6_A 225 VTLECFAFGNPVPQIKWRKLDGS--QTS---------K------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQG 287 (382)
T ss_dssp EEEECEEEEESCCEEEEEECCSC--CSC---------C------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEccCCCCEEEEEECCcc--ccc---------E------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEE
Confidence 36899999999999999998742 111 0 1123447999999999999999999986 4556677
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..+|.....+....+..|+.+.|.|.+.+.|.|. +.|++++..+... .+... ..+ .|.|.++..
T Consensus 288 ~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~--v~W~~~g~~~~~~----~~~~~-~~~-----~L~i~~v~~ 355 (382)
T 1cs6_A 288 RIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPA--VRWLRDGQPLASQ----NRIEV-SGG-----ELRFSKLVL 355 (382)
T ss_dssp EEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCE--EEEEETTEECCCC----SSEEE-ETT-----EEEESSCCG
T ss_pred EEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCE--EEEEECCEECCCC----ceEEE-ECC-----EEEECcCCc
Confidence 88888877777777778899999999999999887776 9999999877322 12222 222 499999999
Q ss_pred cCCEEEEEEcccCC
Q psy13371 160 KDSGKYSCSPSNAD 173 (212)
Q Consensus 160 ~d~g~y~C~~~n~~ 173 (212)
+|+|.|+|.|.|..
T Consensus 356 ~d~G~Y~C~a~N~~ 369 (382)
T 1cs6_A 356 EDSGMYQCVAENKH 369 (382)
T ss_dssp GGCEEEEEEEEETT
T ss_pred ccCEEEEEEEEeCC
Confidence 99999999999983
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=137.11 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=108.1
Q ss_pred CeeEeeeCCCCCce-EEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC-C-CceeE
Q psy13371 1 MLHQRKLKGLLPTR-VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST-Q-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~-~~~~~ 77 (212)
+.|.|.+.+.+.+. +.|++.++..+.. +.++... .+..|.|.+++.+|+|.|+|.+.+ . +..+.
T Consensus 107 v~L~C~~~~~~~~~~v~W~~~~~~~~~~--------~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~ 173 (289)
T 3ejj_X 107 AVLPCLITDPALKDSVSLMREGGRQVLR--------KTVYFFS-----PWRGFIIRKAKVLDSNTYVCKTMVNGRESTST 173 (289)
T ss_dssp EEECEEESCGGGGGSEEEEEGGGEECCT--------TCCEEEE-----TTTEEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred eEeEEEccCCCcceEEEEEecCCeecCC--------CccEEEC-----CCCCEEEeecccccCEEEEEEEEeCCCccccc
Confidence 36899999987765 9999866422221 3344443 223699999999999999999984 3 34455
Q ss_pred EEEEEEe----cccceeeCCCceeeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 78 FVNLNVV----VPTAEILGSPDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 78 ~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
.+.|.|. .+|.....+....+.+|+.+.|.|.+.+ .|.| .+.|++++..+... .............+.|
T Consensus 174 ~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~L 247 (289)
T 3ejj_X 174 GIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGF--NVILKRGDTKLEIP----LNSDFQDNYYKKVRAL 247 (289)
T ss_dssp CEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCC--EEEEEETTEECCCC----EEEEECSSSEEEEEEE
T ss_pred cEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCce--EEEEEECCEEeecc----CCcccccceEEeeEEE
Confidence 6777787 3444555566667789999999999987 4444 49999999876311 1111111222234569
Q ss_pred EEeeeeecCCEEEEEEcccCC
Q psy13371 153 LIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.|.++..+|+|.|+|.|.|..
T Consensus 248 ~i~~v~~~d~G~Y~C~a~N~~ 268 (289)
T 3ejj_X 248 SLNAVDFQDAGIYSCVASNDV 268 (289)
T ss_dssp EESSCCSSSCEEEEEEEECSS
T ss_pred EEEeecccCCEEEEEEEEcCC
Confidence 999999999999999999983
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=134.45 Aligned_cols=169 Identities=18% Similarity=0.292 Sum_probs=111.6
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcce---eeeecceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIH---ILTVGSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~---~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+.| .+.+.|+|++... ......... ..++|+.+.. ..+..+|+|.+++.+|+|.|+|.+.+
T Consensus 19 v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n 96 (240)
T 1moe_A 19 ATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIIDPVEADDVATYYCQQTN 96 (240)
T ss_dssp EEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe--cCCeEEEEEcCCChhhCEEEEEEEcc
Confidence 46999999998 8999999974211 111110000 1246888763 45677999999999999999999998
Q ss_pred CC--ceeEEEEEEEeccc------ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE----ee-----
Q psy13371 72 QP--VRSFFVNLNVVVPT------AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS----YD----- 132 (212)
Q Consensus 72 ~~--~~~~~~~l~v~~~~------~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~----~~----- 132 (212)
.. .......|.|..++ .....+....+.+|+.++|.|.+.+.|.+...+.|+++ +.... ..
T Consensus 97 ~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~ 176 (240)
T 1moe_A 97 EDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGN 176 (240)
T ss_dssp SSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTE
T ss_pred CCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCc
Confidence 63 13345667776542 23445666788999999999999987644345999986 22211 00
Q ss_pred ----CCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 133 ----SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 133 ----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
.....+.....+.......|.|.++..+|+|.|+|.|.+
T Consensus 177 ~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 177 SKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp EEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred cccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 001112222222212235699999999999999999984
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-20 Score=148.33 Aligned_cols=173 Identities=13% Similarity=0.189 Sum_probs=119.2
Q ss_pred CeeEeeeCCCCCceE----EEEe--eCcc-eeeee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRV----SWIR--HRDI-HILTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v----~W~~--~~~~-~~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.|.|.+ .|++ ++.. .+... +......++|+.+..+...+..+|.|.+++.+|+|.|+|.+...
T Consensus 349 v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~an~~ 428 (585)
T 2ocw_A 349 VAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGD 428 (585)
T ss_pred EEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcccCC
Confidence 468999999999887 7998 5521 22221 11122335677776434556667999999999999999998333
Q ss_pred CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCC--CCCceEEEEEcCeEEEeeCCCCc-eeEEeecCceEE
Q psy13371 73 PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSP--EPPAYIFWYHHDEVISYDSSRGG-VSVITEKGEVTT 149 (212)
Q Consensus 73 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 149 (212)
+.....+.|.|...++.+..+....+.+|+.+.|.|.+.+.+ .|...+.|++++..+........ ............
T Consensus 429 g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~ 508 (585)
T 2ocw_A 429 TLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL 508 (585)
T ss_pred CccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccE
Confidence 556677888887765555556777899999999999997432 24445899999987754322111 111111111223
Q ss_pred EEEEEeeeeecCCEEEEEEcccCC
Q psy13371 150 SYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 150 ~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..|.|.++..+|+|.|+|.|.|..
T Consensus 509 ~~L~i~~v~~~d~G~Y~C~a~N~~ 532 (585)
T 2ocw_A 509 VSLTLNLVTRADEGWYWCGVKQGH 532 (585)
T ss_pred EEEEECCCCcccCeEEEEEeEeCC
Confidence 469999999999999999999973
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-20 Score=137.60 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=110.8
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC----C-c
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ----P-V 74 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~----~-~ 74 (212)
+.|.|.+.+.| .|.+.|+|++. .+... +.++... +..|.|.+++.+|+|.|+|.+.+. + .
T Consensus 146 v~L~C~~~g~p~~~~i~W~k~~~--~l~~~------~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~ 211 (329)
T 3oq3_B 146 IDLYCGILYAKHYNNITWYKNNQ--ELIID------GTKYSQS------GQNLIIHNPELEDSGRYDCYVHYDDVRIKND 211 (329)
T ss_dssp EEEECCCCSCCCCCEEEEEETTE--ECCCS------SSSEEEE------TTEEEECSCCGGGCEEEEEEEEECCTTSSSC
T ss_pred EEEEeccCCCCCCceEEEEECCc--cCCCC------CceEecC------CCEEEEeecChhhCEEEEEEEEecccCCCce
Confidence 36899999999 99999999873 22211 2344332 248999999999999999999963 1 1
Q ss_pred --eeEEEEEEEeccc----ceeeCCCceeeeCCCcEEEEeEEeeCC--CCCceEEEEEcCeEEEeeCCCCceeEEeecCc
Q psy13371 75 --RSFFVNLNVVVPT----AEILGSPDLHVDEGSTINLTCSIKYSP--EPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146 (212)
Q Consensus 75 --~~~~~~l~v~~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~~--~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 146 (212)
.+..+.|.|..++ +.+ .+....+.+|+.+.|.|.+.+.| .+...+.|++++..+..... .........+.
T Consensus 212 ~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~-~~~~~~~~~~~ 289 (329)
T 3oq3_B 212 IVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF-GVYSILTSSGG 289 (329)
T ss_dssp EEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCS-SEEEEEEEETT
T ss_pred eEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCC-ceeeeecccCc
Confidence 1223667777665 344 66677899999999999999987 23325899999887422111 11111112333
Q ss_pred eEEEEEEEeeeeecCCE-EEEEEcccCC
Q psy13371 147 VTTSYLLIQQAELKDSG-KYSCSPSNAD 173 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g-~y~C~~~n~~ 173 (212)
...+.|.|.++..+|.| .|+|.|.|..
T Consensus 290 ~~~~~L~I~~v~~~D~G~~Y~C~a~N~~ 317 (329)
T 3oq3_B 290 ITEATLYFENVTEEYIGNTYTCRGHNYY 317 (329)
T ss_dssp EEEEEEEESSCCGGGTTCEEEEEEECSS
T ss_pred eeEeEEEEEeccHHHCCCcEEEEEEecC
Confidence 34567999999999999 9999999983
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-21 Score=133.64 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=108.7
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcceee---eecceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIHIL---TVGSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~~~---~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.| .+.|.|+|++..... ....... ...+|+.... ..+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 18 v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 95 (212)
T 1q0x_L 18 VTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGDKAALTITGAQTEDEAIYFCALWSN 95 (212)
T ss_dssp EEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEECS
T ss_pred EEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe--eCCEEEEEECCCCccCCEEEEEEEecC
Confidence 46999999987 589999997521111 0000000 1136777653 446779999999999999999999886
Q ss_pred Cc--eeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc
Q psy13371 73 PV--RSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146 (212)
Q Consensus 73 ~~--~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 146 (212)
.. ......|.|.. +|.....++......|+.++|.|.+.+.+++...+.|++++..+..... ........++.
T Consensus 96 ~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~-~~~~~~~~~g~ 174 (212)
T 1q0x_L 96 NKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGME-TTQPSKQSNNK 174 (212)
T ss_dssp SCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE-ECCCEECTTSC
T ss_pred chhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCee-cCCceeCCCCC
Confidence 32 22334566632 3333332333334568899999999986544446999999987732100 00011122222
Q ss_pred -eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 147 -VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 147 -~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
...+.|.|.+...+|.|.|+|.|.|+.
T Consensus 175 ~~~~s~L~i~~~~~~d~g~Y~C~a~n~~ 202 (212)
T 1q0x_L 175 YMASSYLTLTARAWERHSSYSCQVTHEG 202 (212)
T ss_dssp EEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred EEEEEEEEEcHHHccCCCcEEEEEEeCC
Confidence 234568898888899999999999984
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=132.95 Aligned_cols=169 Identities=15% Similarity=0.231 Sum_probs=110.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.+.+.|+|++. .+..... ....... ....+|.|.+++.+|+|.|+|.+.+. +.....+
T Consensus 33 v~L~C~~~~~p~~~v~W~~~~~--~~~~~~~----~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 102 (241)
T 3grw_A 33 VRFRCPAAGNPTPSISWLKNGR--EFRGEHR----IGGIKLR----HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTY 102 (241)
T ss_dssp EEEECCEECSSCCEEEEEETTE--ECCGGGS----TTCCEEE----GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEecCCCCceeEEEECCc--ccCCCCc----ccceeee----ccceEEEEEeCCcccCEEEEEEEeecCCceEEEE
Confidence 4689999999999999999773 2221110 0111111 13458999999999999999999885 3455566
Q ss_pred EEEEecc----ccee-eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEE----cCeEEEeeCCCCcee--EEeecCceE
Q psy13371 80 NLNVVVP----TAEI-LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH----HDEVISYDSSRGGVS--VITEKGEVT 148 (212)
Q Consensus 80 ~l~v~~~----~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~----~~~~~~~~~~~~~~~--~~~~~~~~~ 148 (212)
.+.|... +... ..+....+.+|+.+.|.|.+.+.|.|. +.|++ ++..+.......... .........
T Consensus 103 ~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~--v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 180 (241)
T 3grw_A 103 TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH--IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180 (241)
T ss_dssp EEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCE--EEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEE
T ss_pred EEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCE--EEEEEcccCCCcccCCCCceeeeeeeEeeeeecCC
Confidence 7777652 1222 234566788999999999998887664 99999 665553221111000 001112223
Q ss_pred EEEEEEeeeeecCCEEEEEEcccC-CeeEEEEEE
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNA-DVASVYVHV 181 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~-~~~~~~~~v 181 (212)
.+.|.|.++..+|.|.|+|.|.|. ......+.+
T Consensus 181 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l 214 (241)
T 3grw_A 181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214 (241)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred ceEEEECcCCcccCcEEEEEEecCcceEEEEEEE
Confidence 456999999999999999999998 333333333
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=135.79 Aligned_cols=170 Identities=19% Similarity=0.211 Sum_probs=109.2
Q ss_pred CeeEeeeCCC--CCceEEEEeeCccee----eeec-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHI----LTVG-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~----~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.+. +.+.+.|+|...... .... ......++|+.... .....+|+|.+++.+|+|.|+|.+.+..
T Consensus 20 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 97 (256)
T 3ux9_B 20 VTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK--SGTSASLAITGLQSEDEADYYCQVRDNN 97 (256)
T ss_dssp EEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc--cCCEEEEEECCCChhhCEEEEEEEEECC
Confidence 4699999987 789999999653111 1101 11111246888763 3467899999999999999999998742
Q ss_pred ----ceeEEEEEEEecccc--------------------eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--Ce
Q psy13371 74 ----VRSFFVNLNVVVPTA--------------------EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DE 127 (212)
Q Consensus 74 ----~~~~~~~l~v~~~~~--------------------~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~ 127 (212)
.......|.|..++. .+..+....+.+|+.++|.|.+.+.+.+...+.|+++ +.
T Consensus 98 ~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~ 177 (256)
T 3ux9_B 98 ENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGK 177 (256)
T ss_dssp TTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTC
T ss_pred CCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCC
Confidence 222345667765431 2333445568899999999999876533445999986 33
Q ss_pred EEE----eeCC---------CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 128 VIS----YDSS---------RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 128 ~~~----~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+. .... ...+.....++......|.|.+++.+|+|.|+|.+.|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 235 (256)
T 3ux9_B 178 GLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID 235 (256)
T ss_dssp CEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred CcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence 221 0000 11123333222223356999999999999999999986
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-20 Score=131.45 Aligned_cols=168 Identities=15% Similarity=0.210 Sum_probs=112.7
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeee----ec---c---eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILT----VG---S---YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~----~~---~---~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+. +.+.+.|+|........ .. . ......+|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 24 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 103 (256)
T 3juy_B 24 VKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCA 103 (256)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCCcccCEEEEEe
Confidence 4699999984 67899999865321111 11 0 00112469998876677788999999999999999999
Q ss_pred ecCC-------------CceeEEEEEEEecc---------------cceeeCCCceeeeCCCcEEEEeEEeeCCC-CCce
Q psy13371 69 LSTQ-------------PVRSFFVNLNVVVP---------------TAEILGSPDLHVDEGSTINLTCSIKYSPE-PPAY 119 (212)
Q Consensus 69 ~~~~-------------~~~~~~~~l~v~~~---------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-p~~~ 119 (212)
+.+. ........|.|..+ +.....+....+.+|+.++|.|.+.+.+. +.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~-- 181 (256)
T 3juy_B 104 RVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSSHSIRSRR-- 181 (256)
T ss_dssp ECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEEEESSCCTTCC--
T ss_pred EEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEEEECCCcCCee--
Confidence 9875 11233456777653 23455667788999999999999987654 44
Q ss_pred EEEEEc--CeEEE---eeC-----CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 120 IFWYHH--DEVIS---YDS-----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 120 v~W~~~--~~~~~---~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|++. +.... ... ....+......+. ...|.|.+++.+|+|.|.|.+.|.
T Consensus 182 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~L~I~~v~~~DsG~Y~C~~~~~ 242 (256)
T 3juy_B 182 VAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGT--DFTLTITRVEPEDFALYYCQVYGA 242 (256)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCGGGCSEEEEEECCS
T ss_pred EEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCC--EEEEEECCCCHhHCEEEEEEEeeC
Confidence 999984 22111 100 0111222222222 245999999999999999999985
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.86 E-value=6.9e-21 Score=133.58 Aligned_cols=167 Identities=16% Similarity=0.234 Sum_probs=106.4
Q ss_pred CeeEeeeCCCC--CceEEEEeeCc-ceeeee---c---c-eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRD-IHILTV---G---S-YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~-~~~~~~---~---~-~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|++. ...... . . ... ...+|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 97 (219)
T 1c1e_H 18 VKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNEDMATYFCA 97 (219)
T ss_dssp EEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEE
Confidence 46999999875 78999999752 111110 0 0 000 12478888765555678999999999999999999
Q ss_pred ecCCC-----ceeEEEEEEEecc----cceeeCCCceeeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEEeeCCCCce
Q psy13371 69 LSTQP-----VRSFFVNLNVVVP----TAEILGSPDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVISYDSSRGGV 138 (212)
Q Consensus 69 ~~~~~-----~~~~~~~l~v~~~----~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~ 138 (212)
+.+.. .....+.|.|... |.....++...+.+|+.+.|.|.+.+ .|.| ..+.|++++..+......
T Consensus 98 ~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g~~~~~~~~~--- 173 (219)
T 1c1e_H 98 RGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLSSGVHTFP--- 173 (219)
T ss_dssp EEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEECC---
T ss_pred EeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCC-eEEEEEeCCcccceEecC---
Confidence 98853 1223456777652 22222233334678999999999998 6655 249999998753211111
Q ss_pred eEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 139 SVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 139 ~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.... .+. ...+.|.|. ....|.|.|+|.|.|..
T Consensus 174 ~~~~-~~~~~~~s~L~i~-~~~~d~g~Y~C~a~n~~ 207 (219)
T 1c1e_H 174 AVLQ-SDLYTLSSSVTVP-SSPRPSETVTCNVAHPA 207 (219)
T ss_dssp CEES-SSCEEEEEEEEEE-SSSTTTSCCEEEEEEGG
T ss_pred Cccc-CCeEEEEEEEEEe-cccCCCCEEEEEEEeCC
Confidence 0111 122 233568884 44446699999999984
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-21 Score=145.67 Aligned_cols=161 Identities=12% Similarity=0.115 Sum_probs=108.9
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecce--eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeE
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSY--TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 77 (212)
+.|.|.+.| .|.|.|.|+|++. .+...... ......+... ....|.|.+++.+|+|.|+|.+.|. .+.
T Consensus 245 v~L~C~~~g~~p~p~i~W~k~g~-~l~~~~~~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~A~N~--~~~ 315 (423)
T 3qs7_E 245 LWIRCKAVHVNHGFGLTWELENK-ALEEGNYFEMSTYSTNRTMI------RILFAFVSSVARNDTGYYTCSSSKH--PSQ 315 (423)
T ss_dssp EEEEEEEEESSSCCCEEEEESSS-BCCGGGEEEEEEEETTTEEE------EEEEEEESSCCTTTCEEEEEEETTE--EEE
T ss_pred EEEEEEEEcCCCCcEEEEEECCE-EccccceeecccccCCceeE------EEEEEEEeecCHHHCEEEEEEEecC--CCc
Confidence 368999999 6779999999874 22111000 0001111111 2347999999999999999999997 677
Q ss_pred EEEEEEecccceeeCC--CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe
Q psy13371 78 FVNLNVVVPTAEILGS--PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 78 ~~~l~v~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.+.|.|.+++.....+ ....+.+|+.+.|.|.+.+.|.|. +.|++++..+....... ..+. .+...
T Consensus 316 ~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~--i~W~k~g~~l~~~~~~~------~~~~----~~~~~ 383 (423)
T 3qs7_E 316 SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR--CTWTFSRKSFPCEQKGL------DNGY----SISKF 383 (423)
T ss_dssp EEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCE--EEEEETTEEEECBCCBC------SSSS----EEEEE
T ss_pred eEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCe--EEEEECCEECCCccccc------cCCc----EEEEE
Confidence 7888888877554444 345678899999999999998776 99999999885332100 0111 12224
Q ss_pred eeeecCCEEEEEEcccC-CeeEEEEEEe
Q psy13371 156 QAELKDSGKYSCSPSNA-DVASVYVHVL 182 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~-~~~~~~~~v~ 182 (212)
....+|+|.|+|.|.|. ......+.+.
T Consensus 384 ~~~~~D~G~YtC~A~N~~G~~~~s~~L~ 411 (423)
T 3qs7_E 384 CNHKHQPGEYIFHAENDDAQFTKMFTLN 411 (423)
T ss_dssp CCCTTCCSCEEEEEEETTEEEEEEEEEC
T ss_pred ecccccCEEEEEEEEcCCceEEEEEEEE
Confidence 45668999999999998 3344444443
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=136.45 Aligned_cols=152 Identities=22% Similarity=0.326 Sum_probs=104.7
Q ss_pred eEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 3 HQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 3 l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
|.|.+.+ .|.+.+.|++++. .+.. +.++... .......|.|.+++.+|+|.|+|.+.+. +.....+.
T Consensus 127 l~c~~~~~~p~~~i~W~~~~~-~~~~--------~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 195 (317)
T 2y25_A 127 LYSFVTYYVEDLKVNWSHNGS-AIRY--------SDRVKTG--VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD 195 (317)
T ss_dssp EEEEBSSCCSSCEEEEEESSS-BCCC--------CSSEEEE--ECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEeccCCCCcEEEEEECCE-ECCC--------CCCeEEe--ccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEE
Confidence 4455554 5899999999874 2221 2344443 2345667999999999999999999985 33444444
Q ss_pred EEEec--------------------ccceeeC-CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCcee
Q psy13371 81 LNVVV--------------------PTAEILG-SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139 (212)
Q Consensus 81 l~v~~--------------------~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~ 139 (212)
+.+.. ++..... +....+.+|+.+.|.|.+.+.|.|. +.|++++..+... .+.
T Consensus 196 l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~--i~W~~~g~~~~~~----~~~ 269 (317)
T 2y25_A 196 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE--VSWLKNEKALASD----DHC 269 (317)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCE--EEEEESSSEECCC----SSE
T ss_pred EeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCE--EEEEECCEeCCCC----CcE
Confidence 44321 1222222 3456789999999999999887666 9999999887322 222
Q ss_pred EEeec-CceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 140 VITEK-GEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 140 ~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..... +.. +.|.|.++..+|+|.|+|.|.|..
T Consensus 270 ~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~ 302 (317)
T 2y25_A 270 NLKFEAGRT--AYFTINGVSTADSGKYGLVVKNKY 302 (317)
T ss_dssp EECCBTTTE--EEEEEBSCCSTTCEEEEEEEEETT
T ss_pred EEEEcCCCE--EEEEECCCCHHHCEEEEEEEEeCC
Confidence 22222 322 459999999999999999999983
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-21 Score=131.41 Aligned_cols=153 Identities=11% Similarity=0.034 Sum_probs=93.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC---ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP---VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~ 77 (212)
+.|.|.+.+.|. .+.|+|++.. +.. ... ..........|.|.+++.+|+|.|+|.+.+.. ..+.
T Consensus 22 v~L~C~~~~~~~-~~~W~k~g~~-~~~-~~~----------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~ 88 (196)
T 2d3v_A 22 VTIRCQGTLEAQ-EYRLVKEGSP-EPW-DTQ----------NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSD 88 (196)
T ss_dssp EEEEEECCTTCC-EEEEEETTCS-SCS-EEE----------CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCC
T ss_pred EEEEEeCCCCCc-EEEEEECCCC-CCc-ccc----------cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCc
Confidence 469999998876 9999998742 211 000 00123456789999999999999999998752 2245
Q ss_pred EEEEEEecc--cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe
Q psy13371 78 FVNLNVVVP--TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 78 ~~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.+.|.|... ++.+...+...+.+|+.++|.|.+.+.| + .+.|++++..+...... ...... ......|.|.
T Consensus 89 ~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p-~--~~~W~k~g~~~~~~~~~---~~~~~~-~~~~~~L~I~ 161 (196)
T 2d3v_A 89 PLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF-D--RFILTEEGDHKLSWTLD---SQLTPS-GQFQALFPVG 161 (196)
T ss_dssp CEEEEEECSSCCCEEEC-----------CEEEEEESSCC-S--EEEEEEC---CCEEEEE---CEECTT-SCEEEEEECC
T ss_pred cEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCC-C--EEEEEccCCcccccccc---cccccC-CCceeEEEee
Confidence 567777663 2333333445788999999999998775 4 49999998765211100 001111 1122459999
Q ss_pred eeeecCCEEEEEEcccCC
Q psy13371 156 QAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~~ 173 (212)
+++.+|+|.|+|.|.|..
T Consensus 162 ~v~~~D~G~Y~C~a~n~~ 179 (196)
T 2d3v_A 162 PVTPSHRWMLRCYGSRRH 179 (196)
T ss_dssp CCBTTBCEEEEEEEEETT
T ss_pred ecCcccCeeEEEEEEccC
Confidence 999999999999999864
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=136.99 Aligned_cols=170 Identities=17% Similarity=0.210 Sum_probs=109.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee---eee-c-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI---LTV-G-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~---~~~-~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-- 73 (212)
+.|.|.+.+.|.+.+.|+|.+.... ... . ......++|+... ...++.+|+|.+++.+|+|.|+|.+.+..
T Consensus 42 v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 119 (237)
T 3sob_L 42 VTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGS--GSGTDFTLTISSLQPEDFATYYCQQSYTTPP 119 (237)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCCGGGCEEEEEEECSSSSC
T ss_pred EEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEE--cCCCEEEEEECCCChhhCeEEEEeeccCCce
Confidence 3699999999999999999652111 111 1 1111224688776 34567899999999999999999998753
Q ss_pred ceeEEEEEEEec---ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEE
Q psy13371 74 VRSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTT 149 (212)
Q Consensus 74 ~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 149 (212)
.......+.|.. +|.....+.......|+.++|.|.+.+.+++.+.+.|++++..+..............++. ...
T Consensus 120 ~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~ 199 (237)
T 3sob_L 120 TFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 199 (237)
T ss_dssp EECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEE
T ss_pred EEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEE
Confidence 223344566643 2323233333344468889999999885432456999999987632100000001111222 123
Q ss_pred EEEEEeeeeecCCEEEEEEcccC
Q psy13371 150 SYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 150 ~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.....+|.|.|+|.|.|+
T Consensus 200 s~L~i~~~~~~d~g~Y~C~a~n~ 222 (237)
T 3sob_L 200 STLTLSKADYEKHKVYACEVTHQ 222 (237)
T ss_dssp EEEEEEHHHHTTCCEEEEEEECT
T ss_pred EEEEEcHHHccCCCcEEEEEeeC
Confidence 56888888889999999999998
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-20 Score=132.08 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=109.9
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeee------cce---eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTV------GSY---TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~------~~~---~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+. +.+.+.|+|......... ... .....+|+.+..+...+..+|+|.+++.+|+|.|.|.+
T Consensus 26 v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 105 (257)
T 3gkz_A 26 LSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSEDTATYYCSY 105 (257)
T ss_dssp EEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhhCEEEEEEE
Confidence 4699999984 578999999653111110 000 00124788888665667889999999999999999999
Q ss_pred cCCC-----ceeEEEEEEEecc--------------cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeE
Q psy13371 70 STQP-----VRSFFVNLNVVVP--------------TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEV 128 (212)
Q Consensus 70 ~~~~-----~~~~~~~l~v~~~--------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~ 128 (212)
.+.. .......|.|..+ +.....+....+.+|+.++|.|.+.+.+.+ ..+.|+++ +..
T Consensus 106 ~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~-~~v~W~k~~~~~~ 184 (257)
T 3gkz_A 106 FDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSS-SHLYWYQQKPGSS 184 (257)
T ss_dssp ECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCG-GGEEEEEECTTSC
T ss_pred ecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccc-eEEEEEEECCCCC
Confidence 8751 1223456777654 233444556789999999999999876544 14999984 222
Q ss_pred EE--eeC------CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 129 IS--YDS------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 129 ~~--~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.. ... ....+......+ ....|.|.+++.+|+|.|.|.+.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~~~~~ 234 (257)
T 3gkz_A 185 PKLWIYSTSNLASGVPARFSGSGSG--TSYSLTISSMEAEDAASYFCHQWSS 234 (257)
T ss_dssp CEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCEEEEEEECSS
T ss_pred cEEEEEEccccCCCcCCCEEEecCC--CEEEEEECCCChHHCEEEEEEEccC
Confidence 11 000 001122222222 1245999999999999999999875
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-21 Score=133.80 Aligned_cols=167 Identities=14% Similarity=0.221 Sum_probs=108.5
Q ss_pred CeeEeeeCCCC--CceEEEEeeCccee----eee--c----ceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHI----LTV--G----SYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~----~~~--~----~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.+.+.+ .+.+.|+|...... ... . .... ...+|+.+..+...++.+|+|.+++.+|+|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 97 (222)
T 1q9r_B 18 LRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSATYY 97 (222)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred EEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCCcccCeEEE
Confidence 36999999875 78999999753211 110 0 0000 124789888655567889999999999999999
Q ss_pred EEecCCC------ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCC
Q psy13371 67 CQLSTQP------VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSR 135 (212)
Q Consensus 67 C~~~~~~------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~ 135 (212)
|.+.+.. .......|.|.. +|.....++...+.+|+.++|.|.+.+. |.| ..+.|++++..+...
T Consensus 98 C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g~~~~~~--- 173 (222)
T 1q9r_B 98 CARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLSSGVH--- 173 (222)
T ss_dssp EEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSC-CEEEEGGGTBCTTEE---
T ss_pred EEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCC-CEEEEecCCeEcceE---
Confidence 9998853 122345677764 2222222223345679999999999975 554 259999988654211
Q ss_pred CceeEEeecC-ceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 136 GGVSVITEKG-EVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 136 ~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.......++ ....+.|.|.+...+| |.|+|.|.|+.
T Consensus 174 -~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~ 210 (222)
T 1q9r_B 174 -TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPA 210 (222)
T ss_dssp -EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGG
T ss_pred -eccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccC
Confidence 001111222 1223468888888888 99999999983
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-21 Score=136.50 Aligned_cols=161 Identities=21% Similarity=0.324 Sum_probs=111.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee--ecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC---Cc
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT--VGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ---PV 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~ 74 (212)
+.|.|.+.+.|.+.+.|+|++...... ... ......+|+.... ..|.|.+++.+|+|.|+|.+.+. ..
T Consensus 22 v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~g~~~ 95 (209)
T 1nbq_A 22 VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP------TGITFKSVTREDTGTYTCMVSEEGGNSY 95 (209)
T ss_dssp CEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET------TEEECSCCCTTSCSEEEEEEEETTSSCE
T ss_pred EEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec------cEEEEeeCCHHHCcEEEEEEecCCCCcc
Confidence 479999999999999999987531110 000 0011234555541 58999999999999999999874 23
Q ss_pred eeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEE-eeCCCCCceEEEEEcCeEEEeeCCCC-----ceeEEeecCceE
Q psy13371 75 RSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRG-----GVSVITEKGEVT 148 (212)
Q Consensus 75 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 148 (212)
.+..+.|.|..+|.....+....+..|+.+.|.|.+ .+.|.|. +.|++++..+....... .........
T Consensus 96 ~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 170 (209)
T 1nbq_A 96 GEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSE--YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTT--- 170 (209)
T ss_dssp ECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCE--EEEEETTCCCCSCSSSSSSCTTCCCCCCTTT---
T ss_pred ceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCce--eEEEECCeeCCCccccceeeeccceEEcCCc---
Confidence 455677777777655444445568899999999997 6666564 99999998764322110 011111111
Q ss_pred EEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.|.|.++..+|.|.|+|.|.|..
T Consensus 171 -~~L~i~~~~~~d~G~Y~C~a~n~~ 194 (209)
T 1nbq_A 171 -GELVFDPLSASDTGEYSCEARNGY 194 (209)
T ss_dssp -CCEEESSCCGGGCCCEEEEEECSS
T ss_pred -ceEEEEeccccCCeEEEEEEeCCc
Confidence 249999999999999999999983
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-20 Score=131.85 Aligned_cols=168 Identities=19% Similarity=0.178 Sum_probs=107.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----ecc----eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----VGS----YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~----~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|. .+.|.+.|.|+|+....... ... ......+|+.+.. ......+|+|.+++.+|+|.|.|.+.+.
T Consensus 18 v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 95 (238)
T 2p1y_A 18 VTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQENFSLILELATPSQTSVYFCASGDL 95 (238)
T ss_dssp EEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSSSBCEEEESSCCGGGCEEEEEEEEC-
T ss_pred EEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCCceEEEEEecCCcccCeeEEEEEEeC
Confidence 468999 68889999999964211110 000 0001246787764 3445678999999999999999999875
Q ss_pred Cc------eeEEEEEEEeccc------------ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EE
Q psy13371 73 PV------RSFFVNLNVVVPT------------AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VI 129 (212)
Q Consensus 73 ~~------~~~~~~l~v~~~~------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~ 129 (212)
.. ......|.|...+ .....+....+.+|+.++|.|.+.+.|.|. +.|++++. .+
T Consensus 96 ~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~--i~W~k~~~~~~~~~~ 173 (238)
T 2p1y_A 96 GQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDY--FPWYQQFPGEGPALL 173 (238)
T ss_dssp -----CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCE--EEEEEECTTSCCEEE
T ss_pred CCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCc--EEEEEECCCCCCEEE
Confidence 21 1123466665543 233446667899999999999998876554 99998641 11
Q ss_pred EeeCCC-----CceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 130 SYDSSR-----GGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 130 ~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...... ..+.....+.......|.|.++..+|+|.|+|.|.|.
T Consensus 174 ~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 221 (238)
T 2p1y_A 174 ISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT 221 (238)
T ss_dssp EEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred EEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence 111100 0111111111112346999999999999999999987
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-21 Score=138.37 Aligned_cols=151 Identities=23% Similarity=0.445 Sum_probs=106.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC---ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP---VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~ 77 (212)
+.|.|.+.+.|.+.+.|++++. .+... .+.++... .+..|.|.+++.+|+|.|+|.+.+.. ....
T Consensus 116 v~l~C~~~~~p~~~v~W~~~~~-~~~~~------~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~ 183 (291)
T 2wim_A 116 AEVVCRVSSSPAPAVSWLYHNE-EVTTI------SDNRFAML-----ANNNLQILNINKSDEGIYRCEGRVEARGEIDFR 183 (291)
T ss_dssp EEECCCCBCSSCCEEEEECC-----CBC------CCSSEEEC-----TTSCEEETTCCGGGCEEEEEEEEETTTTEEEEE
T ss_pred EEEEEEEccCCCCEEEEEECCc-ccccc------CCceEEEc-----cCCCEEEEecchhhCEEEEEEEEECCCCeeEEe
Confidence 3689999999999999999874 22211 13344443 23369999999999999999998752 2234
Q ss_pred EEEEEEecccceeeCCC--ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe
Q psy13371 78 FVNLNVVVPTAEILGSP--DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 78 ~~~l~v~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.+.+.+..+|.....+. ...+.+|+.+.|.|.+.+.|.|. +.|++++..+... ........+ ..|.|.
T Consensus 184 ~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~--v~W~~~g~~~~~~----~~~~~~~~~----~~L~i~ 253 (291)
T 2wim_A 184 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA--ISWFRNGKLIEEN----EKYILKGSN----TELTVR 253 (291)
T ss_dssp EEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCE--EEEEETTEECCCT----TTEEECSTT----CEEEEE
T ss_pred eEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCe--EEEEECCEECcCC----ccEEEcCCc----cEEEEe
Confidence 55666666664443333 34577899999999998887665 9999999877321 122222222 249999
Q ss_pred eeeecCCEEEEEEcccCC
Q psy13371 156 QAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~~ 173 (212)
++..+|+|.|+|.|.|..
T Consensus 254 ~~~~~d~G~Y~C~a~N~~ 271 (291)
T 2wim_A 254 NIINSDGGPYVCRATNKA 271 (291)
T ss_dssp SCCSTTCEEEEEEEEETT
T ss_pred eCCcccCEEEEEEEEECC
Confidence 999999999999999983
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=133.67 Aligned_cols=169 Identities=19% Similarity=0.241 Sum_probs=111.5
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce----eeeec--c-eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH----ILTVG--S-YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~----~~~~~--~-~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+.| .+.|.|+|++... +.... . ..+ ..++|+.+..+...+..+|+|.+++.+|+|.|+|.+
T Consensus 18 v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 97 (257)
T 1f3r_B 18 LSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTR 97 (257)
T ss_dssp EEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTCCEEEEEEE
T ss_pred EEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcccCEEEEEEE
Confidence 46999999885 7899999974211 11100 0 000 124788887655567889999999999999999999
Q ss_pred cCCC--------ce--eEEEEEEEeccc--------------c-eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEE
Q psy13371 70 STQP--------VR--SFFVNLNVVVPT--------------A-EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH 124 (212)
Q Consensus 70 ~~~~--------~~--~~~~~l~v~~~~--------------~-~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~ 124 (212)
.+.. .. .....|.|..++ . ....+....+.+|+.++|.|.+.+.+.+. +.|++
T Consensus 98 ~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~--v~W~k 175 (257)
T 1f3r_B 98 DLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNY--LAWYQ 175 (257)
T ss_dssp ESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBTC--EEEEE
T ss_pred cccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCCc--EEEEE
Confidence 8852 11 133467776542 1 22335566788999999999998776665 99999
Q ss_pred --cCeEEE---eeC-----CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 125 --HDEVIS---YDS-----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 125 --~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
++..+. ... ....+......+ ....|.|.++..+|+|.|+|.+.|..
T Consensus 176 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 176 QKLGEAPKLLIYNTNSLQTGIPSRFSGSGSG--TDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp ECTTSCCEEEEETTTEECTTCCTTEEEEEEB--TEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred ECCCCCcEEEEEEccCCCCCcCCCEEEecCC--CEEEEEECCCChhhCEEEEEEEeCCC
Confidence 444321 100 001122222111 12469999999999999999999863
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-20 Score=132.76 Aligned_cols=170 Identities=16% Similarity=0.224 Sum_probs=108.8
Q ss_pred CeeEeeeCCCC-----CceEEEEeeCccee---eeecceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLL-----PTRVSWIRHRDIHI---LTVGSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p-----~~~v~W~~~~~~~~---~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+.+.| .+.+.|+|.+.... +....... ...+|+.+.. ..+..+|+|.+++.+|+|.|.|.+.
T Consensus 19 v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~ 96 (247)
T 1svz_A 19 ASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKISRVEAEDLGIYYCFQG 96 (247)
T ss_dssp EEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc--CCCEEEEEECCCCHHHCEEEEEEEc
Confidence 46999999988 79999999653211 11110000 1246888763 4567799999999999999999998
Q ss_pred CCCc--eeEEEEEEEeccc-------------ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEE---E
Q psy13371 71 TQPV--RSFFVNLNVVVPT-------------AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVI---S 130 (212)
Q Consensus 71 ~~~~--~~~~~~l~v~~~~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~---~ 130 (212)
+... ......|.|..++ ..+..++...+.+|+.++|.|.+.+.+.+...+.|++++ ... .
T Consensus 97 n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~ 176 (247)
T 1svz_A 97 SHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVG 176 (247)
T ss_dssp SSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEE
T ss_pred cCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEE
Confidence 8532 2234567776532 233444556689999999999998775333349999863 211 1
Q ss_pred eeCC----------CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 131 YDSS----------RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 131 ~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.... ...+.....+.......|.|.+++.+|+|.|+|.+.|.
T Consensus 177 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 177 WINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 1110 01222222211112356999999999999999999985
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=130.18 Aligned_cols=155 Identities=19% Similarity=0.272 Sum_probs=105.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcc----eeeeec---ceee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDI----HILTVG---SYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~----~~~~~~---~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|...+.+.+.+.|+|++.. .+.... .... ...+|+.+. .+.+|.|.+++.+|+|.|+|.+.
T Consensus 17 v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~-----~~~~L~i~~v~~~D~G~Y~C~~~ 91 (208)
T 3r4d_A 17 VLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-----SNGSLLFQMITMKDMGVYTLDMT 91 (208)
T ss_dssp EEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC-----TTSCEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe-----cCCeEEEccccccCCeEEEEEEE
Confidence 46999988889999999986521 111100 0000 013455554 33479999999999999999999
Q ss_pred CCC--ceeEEEEEEEeccc--ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc
Q psy13371 71 TQP--VRSFFVNLNVVVPT--AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146 (212)
Q Consensus 71 ~~~--~~~~~~~l~v~~~~--~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 146 (212)
+.. ..+..+.|.|..++ +.+...... +.+|+.+.|.|.+.+.| | .+.|++++..+... ........+
T Consensus 92 ~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~~~p-p--~i~W~~~g~~l~~~----~~~~~~~~~- 162 (208)
T 3r4d_A 92 DENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLSNDIG-A--NIQWLFNSQSLQLT----ERMTLSQNN- 162 (208)
T ss_dssp CSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEECSCTT-C--EEEEEETTEECCCC----SSEEEETTT-
T ss_pred cccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEECCCCC-C--ceEEEECCEeCCCC----CCeEEcCCC-
Confidence 863 44556677776543 222222222 88899999999998754 5 49999999877321 222222222
Q ss_pred eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 147 VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..|.|.++..+|.|.|+|.|.|.
T Consensus 163 ---~~L~i~~v~~~d~G~Y~C~a~N~ 185 (208)
T 3r4d_A 163 ---SILRIDPIKREDAGEYQCEISNP 185 (208)
T ss_dssp ---TEEEESSCCGGGCEEEEEEEECT
T ss_pred ---CEEEEeccCHHhCeEEEEEEecC
Confidence 24999999999999999999998
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-19 Score=131.78 Aligned_cols=177 Identities=15% Similarity=0.183 Sum_probs=114.6
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee----ec---ce-e--eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT----VG---SY-T--YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~----~~---~~-~--~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|++...... .. .. . ...++|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 44 v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 123 (282)
T 1qok_A 44 VKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCN 123 (282)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChhhCEEEEEE
Confidence 36899999875 6899999975321111 00 00 0 012478888765566788999999999999999999
Q ss_pred ecCCCc------eeEEEEEEEeccc---------------ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEE--c
Q psy13371 69 LSTQPV------RSFFVNLNVVVPT---------------AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH--H 125 (212)
Q Consensus 69 ~~~~~~------~~~~~~l~v~~~~---------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~--~ 125 (212)
+.+... ....+.|.|..++ .....+....+.+|+.++|.|.+.+.+ +. +.|++ +
T Consensus 124 ~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~--v~W~k~~~ 200 (282)
T 1qok_A 124 EGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SY--MHWFQQKP 200 (282)
T ss_dssp EECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SC--CEEEEECT
T ss_pred eccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ce--EEEEEECC
Confidence 987521 1123467776542 223345567789999999999998876 55 99999 4
Q ss_pred CeEEEe---eC-----CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC----CeeEEEEEEe
Q psy13371 126 DEVISY---DS-----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA----DVASVYVHVL 182 (212)
Q Consensus 126 ~~~~~~---~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~----~~~~~~~~v~ 182 (212)
+..+.. .. ....+......+ ....|.|.++..+|+|.|+|.+.|. .+....+.|.
T Consensus 201 g~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 267 (282)
T 1qok_A 201 GTSPKLWIYSTSNLASGVPARFSGSGSG--TSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK 267 (282)
T ss_dssp TSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CCCcEEEEEEecCCCCcccCCeEEecCC--CEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence 443311 00 011122222111 1246999999999999999999875 2333455553
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-21 Score=136.20 Aligned_cols=167 Identities=20% Similarity=0.305 Sum_probs=108.2
Q ss_pred CeeEeeeCC---CCCceEEEEeeCcce---eeeecce------------------eeecCCceEEEeeCCCCeEEEEEcc
Q psy13371 1 MLHQRKLKG---LLPTRVSWIRHRDIH---ILTVGSY------------------TYTSDQRFSAIHRREGDEWTLHIKW 56 (212)
Q Consensus 1 ~~l~C~~~~---~p~~~v~W~~~~~~~---~~~~~~~------------------~~~~~~r~~~~~~~~~~~~~L~i~~ 56 (212)
+.|.|.+.+ .|.+.+.|+|++... ....+.. .....+|+.+.. .++.+|+|.+
T Consensus 20 v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~L~I~~ 96 (250)
T 2fbo_J 20 VELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN---LAAPTLRLTH 96 (250)
T ss_dssp EEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC---TTSCCEEECS
T ss_pred EEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc---CCcceEEEee
Confidence 468999987 788999999987421 0111000 011235555442 2456899999
Q ss_pred cCCCCCEEEEEEecCCCc------eeEEEEEEEecc--c-ce-eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC
Q psy13371 57 AQKRDAGVYECQLSTQPV------RSFFVNLNVVVP--T-AE-ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126 (212)
Q Consensus 57 ~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~--~-~~-~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~ 126 (212)
++.+|+|.|+|.+.+... ....+.|.|..+ + .. ...+....+.+|+.+.|.|.+.+.|.|. +.|++++
T Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~--v~W~k~~ 174 (250)
T 2fbo_J 97 VHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN--VTWYTGP 174 (250)
T ss_dssp CCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCE--EEEEEEE
T ss_pred CChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCe--eEEEeCC
Confidence 999999999999998532 134677888764 2 22 2234456677899999999999877774 9999998
Q ss_pred eEEEeeCCCCceeE----------Eee--cCceE---EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 127 EVISYDSSRGGVSV----------ITE--KGEVT---TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 127 ~~~~~~~~~~~~~~----------~~~--~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+........... ... ..... ...|.|.++..+|+|.|+|.|.|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 235 (250)
T 2fbo_J 175 TFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATG 235 (250)
T ss_dssp ECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESS
T ss_pred CcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCC
Confidence 76532110000000 000 00000 025999999999999999999994
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.86 E-value=8.5e-21 Score=132.32 Aligned_cols=167 Identities=17% Similarity=0.227 Sum_probs=107.3
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee----eec--c-eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL----TVG--S-YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~----~~~--~-~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+.+ .+.+.|+|++..... ... . ... ...+|+.+..+...++.+|+|.+++.+|+|.|.|.+
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 97 (210)
T 3d9a_H 18 LSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCAN 97 (210)
T ss_dssp EEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcccCEEEEEEE
Confidence 46999999875 489999987421111 100 0 000 124788887654556789999999999999999999
Q ss_pred cCCCceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeec
Q psy13371 70 STQPVRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144 (212)
Q Consensus 70 ~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 144 (212)
.+.........|.|.. +|.....++...+..|+.++|.|.+.+. |.| ..+.|++++..+...... . .. ..
T Consensus 98 ~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~~~~~~~~~--~-~~-~~ 172 (210)
T 3d9a_H 98 WDGDYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLSSGVHTFP--A-VL-QS 172 (210)
T ss_dssp TTSSCBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEECC--C-EE-ET
T ss_pred ecCcccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCC-cEEEEeeCCcccceEEcC--C-cc-CC
Confidence 9853222335666653 2222222333446789999999999886 544 259999988753211111 0 11 11
Q ss_pred Cc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 145 GE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 145 ~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+. ...+.|.|.+...+| |.|+|.|.|..
T Consensus 173 ~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~ 201 (210)
T 3d9a_H 173 DLYTLSSSVTVPSSTWPS-ETVTCNVAHPA 201 (210)
T ss_dssp TEEEEEEEEEEEGGGTTT-SCCEEEEEEGG
T ss_pred CcEEEEEEEEEcHHHcCC-CcEEEEEEeCC
Confidence 21 123568888887767 99999999983
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=129.81 Aligned_cols=134 Identities=21% Similarity=0.266 Sum_probs=97.0
Q ss_pred CeeEeeeCCCCCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEE
Q psy13371 1 MLHQRKLKGLLPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 79 (212)
+.|.|.+.+.+.+ .+.|+|++. .+. ..+..|.|.+++.+|+|.|+|.+.+.. .+..+
T Consensus 22 v~L~C~~~~~~~~~~i~W~~~~~--~~~-------------------~~~~~L~i~~v~~~d~G~Y~C~~~~~~-~s~~~ 79 (176)
T 1f2q_A 22 VTLTCNGNNFFEVSSTKWFHNGS--LSE-------------------ETNSSLNIVNAKFEDSGEYKCQHQQVN-ESEPV 79 (176)
T ss_dssp EEEECCTTCC----CCEEEETTE--ECS-------------------CCSSEEEECSCCGGGCEEEEEECTTSS-CCCCE
T ss_pred EEEEEeCCCCCCcceEEEEECCe--ECC-------------------CCceEEEEeccceecCEEEEEEcCCcc-ccccE
Confidence 4689999998875 699999773 221 123489999999999999999998853 34556
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..++... .+....+.+|+.+.|.|.+.+.+ |...+.|++++..+..... . ..|.|.++..
T Consensus 80 ~l~V~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~g~~~~~~~~---------~-----~~L~i~~v~~ 143 (176)
T 1f2q_A 80 YLEVFSDWLLL-QASAEVVMEGQPLFLRCHGWRNW-DVYKVIYYKDGEALKYWYE---------N-----HNISITNATV 143 (176)
T ss_dssp EEEEECSSEEE-EESCSEEETTSCEEEEEEEGGGC-CEEEEEEEETTEECCSCCC---------S-----SEEEESSCCG
T ss_pred EEEEeCcceee-cCCcceeeCCCCEEEEEEecCCC-CceEEEEEECCEEEeeecC---------C-----CeEEECCCCc
Confidence 67776444333 33345788999999999996443 3345999999987632111 1 2499999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|+|.|.|.
T Consensus 144 ~d~G~Y~C~a~n~ 156 (176)
T 1f2q_A 144 EDSGTYYCTGKVW 156 (176)
T ss_dssp GGCEEEEEEEEET
T ss_pred ccCEEEEEEEEeC
Confidence 9999999999996
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=130.21 Aligned_cols=168 Identities=18% Similarity=0.253 Sum_probs=110.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eee--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTV--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~- 73 (212)
+.|.|.+.+.|.+.+.|+|...... ... .......++|+.+..+......+|+|.+++.+|+|.|.|.+.+..
T Consensus 21 v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~ 100 (256)
T 3tf7_C 21 LQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGT 100 (256)
T ss_dssp EEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECTTC
T ss_pred EEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecCCC
Confidence 4689999999999999998643111 111 111223367888875566788999999999999999999998742
Q ss_pred ----ceeEEEEEEEec--------------------ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e
Q psy13371 74 ----VRSFFVNLNVVV--------------------PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E 127 (212)
Q Consensus 74 ----~~~~~~~l~v~~--------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~ 127 (212)
.......|.|.. ++.....+....+.+|+.++|.|.+.+. .|. +.|+++. .
T Consensus 101 ~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~--v~W~k~~~~~ 177 (256)
T 3tf7_C 101 GSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNY--MYWYRQDTGH 177 (256)
T ss_dssp TTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CSE--EEEEEECTTS
T ss_pred ccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceE--EEEEEECCCC
Confidence 122234666664 2334555666778899999999999765 454 9999843 1
Q ss_pred E---EEee-CC-------CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 128 V---ISYD-SS-------RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 128 ~---~~~~-~~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
. +... .. ...+....... .....|.|.+++.+|+|.|+|.+.|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~v~~~DsG~Y~C~a~n~ 232 (256)
T 3tf7_C 178 ELRLIYYSYGAGNLQIGDVPDGYKATRTT-QEDFFLTLESASPSQTSLYFCASSDA 232 (256)
T ss_dssp CEEEEEEEESTTCCEECSCCTTCEEECCS-SSBCEEEESSCCGGGCEEEEEEEEEE
T ss_pred CeEEEEEEcCCCceecCccCCceEEEeCC-CCeEEEEECCCCHHHCEEEEEEecCC
Confidence 1 1110 00 01111111111 11235999999999999999999875
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-21 Score=133.29 Aligned_cols=160 Identities=20% Similarity=0.309 Sum_probs=106.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc--eeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV--RSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~ 78 (212)
+.|.|.+.+.|.+.+.|+|++. . +.... ..+.............|.|.+++.+|+|.|+|.+.+... .+..
T Consensus 27 v~L~C~~~g~p~~~v~W~~~g~-~-~~~~~-----~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~ 99 (217)
T 2vr9_A 27 ATLNCKVEGKPEPTIEWFKDGE-P-VSTNE-----KKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRH 99 (217)
T ss_dssp EEECCEEECSSCCEEEEEETTE-E-CCCSS-----SSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCC
T ss_pred EEEEEEcCCCCCCeEEEEECCc-C-ccCCC-----ccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCcccccc
Confidence 3689999999999999999773 2 22110 001111110111122347889999999999999998532 2334
Q ss_pred EEEEEec-ccceeeCCCceeeeCCCcEEEEeEE-eeCCCCCceEEEEEcCeEEEeeCC----CCceeEEeecCceEEEEE
Q psy13371 79 VNLNVVV-PTAEILGSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSS----RGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 79 ~~l~v~~-~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~p~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l 152 (212)
+.+.|.. ++.....+....+..|+.+.|.|.+ .+.|.|. +.|++++..+..... ...+......+ .|
T Consensus 100 ~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~--v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~L 172 (217)
T 2vr9_A 100 ASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPT--LIWIKDGVPLDDLKAMSFGASSRVRIVDGG-----NL 172 (217)
T ss_dssp EEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCE--EEEEETTEEECCCCCC---CCCSEEEETTT-----EE
T ss_pred ceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCe--EEEEECCcCCCcccccccccCCcEEecCCC-----cE
Confidence 5666655 3344445566778999999999998 7776665 999999988742211 11112222222 49
Q ss_pred EEeeeeecCCEEEEEEcccCCe
Q psy13371 153 LIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
.|.++..+|.|.|+|.|.|..+
T Consensus 173 ~i~~~~~~d~G~Y~C~a~N~~G 194 (217)
T 2vr9_A 173 LISNVEPIDEGNYKCIAQNLVG 194 (217)
T ss_dssp EESSCCSTTCEEEEEEEEETTE
T ss_pred EEeeCCHHHCeEEEEEEEcccc
Confidence 9999999999999999999843
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=137.18 Aligned_cols=170 Identities=14% Similarity=0.170 Sum_probs=107.7
Q ss_pred CeeEeeeCCCC-----CceEEEEeeCcceeee---ecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLL-----PTRVSWIRHRDIHILT---VGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p-----~~~v~W~~~~~~~~~~---~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+.+.| .+.+.|+|++...... ... ......+|+.+.. ..+..+|+|.+++.+|+|.|+|.+.
T Consensus 56 v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~ 133 (254)
T 2c1o_A 56 ASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG--SGTDFTLKISRVEAEDLGIYYCVQG 133 (254)
T ss_dssp EEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred EEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEec--CCCEEEEEECcCCcccCEEEEEEEE
Confidence 36999999988 4899999865322111 000 0001136777763 4567799999999999999999999
Q ss_pred CCCc--eeEEEEEEEec---ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC
Q psy13371 71 TQPV--RSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145 (212)
Q Consensus 71 ~~~~--~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 145 (212)
+... ......+.|.. +|.....+.......|+.++|.|.+.+.+++...+.|++++..+..............++
T Consensus 134 n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g 213 (254)
T 2c1o_A 134 SHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDS 213 (254)
T ss_dssp SSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTC
T ss_pred cCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCC
Confidence 8632 12233566653 233333233333345789999999988554445699999998763210000000001111
Q ss_pred c-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 146 E-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 146 ~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
. ...+.|.|.++..+|.|.|+|.|.|+
T Consensus 214 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 241 (254)
T 2c1o_A 214 TYSMSSTLTLTKDEYERHNSYTCEATHK 241 (254)
T ss_dssp CEEEEEEEEEEHHHHHTCCEEEEEEECT
T ss_pred cEEEEEEEEeccccccCCCeEEEEEEcC
Confidence 1 12456999999999999999999998
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-20 Score=127.70 Aligned_cols=165 Identities=21% Similarity=0.293 Sum_probs=107.1
Q ss_pred CeeEeeeCCCCCc---eEEEEeeCcceeeee-----cce--ee--ecCCceEEEee-CCCCeEEEEEcccCCCCCEEEEE
Q psy13371 1 MLHQRKLKGLLPT---RVSWIRHRDIHILTV-----GSY--TY--TSDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYEC 67 (212)
Q Consensus 1 ~~l~C~~~~~p~~---~v~W~~~~~~~~~~~-----~~~--~~--~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C 67 (212)
+.|.|.+.+.|.+ .|.|+|++....... ... .. ...+|+..... ....+++|+|.+++.+|+|.|.|
T Consensus 17 v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C 96 (218)
T 4frw_A 17 AKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYEC 96 (218)
T ss_dssp EEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCGGGCEEEEE
T ss_pred EEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccHHHCCceeE
Confidence 3699999998765 489999874211110 000 00 11245554422 13356789999999999999999
Q ss_pred EecCCC--ceeEEEEEEEeccc-ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec
Q psy13371 68 QLSTQP--VRSFFVNLNVVVPT-AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144 (212)
Q Consensus 68 ~~~~~~--~~~~~~~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 144 (212)
.+.+.. .......+.+..++ ..........+..|+.+.+.|.+.+.|.|. +.|++++..+..... .....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~--i~W~~~~~~~~~~~~-----~~~~~ 169 (218)
T 4frw_A 97 RVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPS--VTWDTEVKGTTSSRS-----FKHSR 169 (218)
T ss_dssp EEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCE--EEEEESSCCEEEEEE-----EECSS
T ss_pred EEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCce--EEEEECCcccccCce-----EecCC
Confidence 988742 22223333343333 233334456677889999999999887766 999999876643211 11111
Q ss_pred CceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 145 GEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 145 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.....+.|.|.++..+|.|.|+|.|.|+
T Consensus 170 ~~~~~s~L~i~~~~~~d~g~YtC~a~N~ 197 (218)
T 4frw_A 170 SAAVTSEFHLVPSRSMNGQPLTCVVSHP 197 (218)
T ss_dssp SEEEEEEEEECCCGGGTTCEEEEEEECT
T ss_pred cEEEEEEEEEeeCCHHhCeEEEEEEEeC
Confidence 2223456999999999999999999997
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-20 Score=129.55 Aligned_cols=169 Identities=14% Similarity=0.188 Sum_probs=107.0
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce----eeeecc----eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH----ILTVGS----YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~----~~~~~~----~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|..... +..... ... ..++|+.+..+...++.+|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 97 (223)
T 1dee_B 18 LRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA 97 (223)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHHHCEEEEEE
Confidence 36999999876 5899999975311 111100 001 12479998866556788999999999999999999
Q ss_pred ecCCC-------ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEE-cCeEEEeeCCC
Q psy13371 69 LSTQP-------VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYH-HDEVISYDSSR 135 (212)
Q Consensus 69 ~~~~~-------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~-~~~~~~~~~~~ 135 (212)
+.+.. .....+.|.|.. +|.....++...+..|+.++|.|.+.+. |.| ..+.|++ ++..+.... .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~g~~l~~~~-~ 175 (223)
T 1dee_B 98 KVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDS-ITFSWKYKNNSDISSTR-G 175 (223)
T ss_dssp EESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSC-CEEEEEETTSCBCSCEE-E
T ss_pred EeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCC-eEEEeEccCCCccceeE-E
Confidence 98753 112345777763 2222211222235689999999999876 433 3699999 887652100 0
Q ss_pred CceeEEeecCce-EEEEEEEeeeee--cCCEEEEEEcccCC
Q psy13371 136 GGVSVITEKGEV-TTSYLLIQQAEL--KDSGKYSCSPSNAD 173 (212)
Q Consensus 136 ~~~~~~~~~~~~-~~~~l~i~~~~~--~d~g~y~C~~~n~~ 173 (212)
.. .....+.. ..+.|.|..... +|.|.|+|.+.|..
T Consensus 176 ~~--~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~ 214 (223)
T 1dee_B 176 FP--SVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPN 214 (223)
T ss_dssp CC--CEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTT
T ss_pred CC--ccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCC
Confidence 00 00112222 234577766655 77899999999983
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-21 Score=130.79 Aligned_cols=150 Identities=23% Similarity=0.336 Sum_probs=102.7
Q ss_pred CeeEee-eCCCCC-ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-cee-
Q psy13371 1 MLHQRK-LKGLLP-TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRS- 76 (212)
Q Consensus 1 ~~l~C~-~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~- 76 (212)
+.|.|. +.+.|. +.+.|+|++....... +.+.... ..+.+|.|.+++.+|+|.|+|.+.+.. ...
T Consensus 26 v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~-------~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~ 94 (201)
T 3s97_C 26 MVLLCDPPYHFPDDLSYRWLLNEFPVFITM-------DKRRFVS----QTNGNLYIANVEASDKGNYSCFVSSPSITKSV 94 (201)
T ss_dssp EEECCCCCSEESSCCEEEEEESSTTCBCCC-------SSSEEEC----TTTCCEEESSCCGGGCEEEEEEEEEGGGTEEE
T ss_pred EEEeccccccCCCceEEEEEECCceeeeee-------CCCeEEE----cCCCeEEECcCCcccCeEEEEEEEecCCCcch
Confidence 368999 888898 9999999874222111 1222222 134579999999999999999999742 121
Q ss_pred --EEEEEEEe-------cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce
Q psy13371 77 --FFVNLNVV-------VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147 (212)
Q Consensus 77 --~~~~l~v~-------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (212)
....+.+. .+|.....+....+..|+.+.|.|.+.+.|.|. +.|++++..+. .. . .....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~--v~W~~~~~~~~----~~-~-~~~~~~-- 164 (201)
T 3s97_C 95 FSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPD--IRWRKVLEPMP----ST-A-EISTSG-- 164 (201)
T ss_dssp ECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCE--EEEEETTBCCC----TT-C-EEETTT--
T ss_pred hhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCc--eEEEeCCCcCC----Cc-e-eecCCC--
Confidence 22333332 123333344567889999999999998887665 99999998652 11 1 111122
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..|.|.++..+|.|.|+|.|.|..
T Consensus 165 --~~L~i~~v~~~d~G~Y~C~a~n~~ 188 (201)
T 3s97_C 165 --AVLKIFNIQLEDEGIYECEAENIR 188 (201)
T ss_dssp --TEEEECSCCGGGCEEEEEEEEETT
T ss_pred --CEEEEccCChhhCEEEEEEEEecC
Confidence 249999999999999999999983
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=135.98 Aligned_cols=177 Identities=22% Similarity=0.300 Sum_probs=107.7
Q ss_pred CeeEeeeC---CCCCceEEEEeeCcceeeeecceee---------ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLK---GLLPTRVSWIRHRDIHILTVGSYTY---------TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~---~~p~~~v~W~~~~~~~~~~~~~~~~---------~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+. +.+.+.|.|+|.+............ ...+|+.+..+...++.+|.|.+++.+|+|.|+|.
T Consensus 23 v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 102 (268)
T 3mj6_A 23 VLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCE 102 (268)
T ss_dssp EEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHhHCEEEEEE
Confidence 46899998 6788899999976421111000000 01256666544455668899999999999999999
Q ss_pred ecCCC-c--eeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeE-------EEeeC----
Q psy13371 69 LSTQP-V--RSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEV-------ISYDS---- 133 (212)
Q Consensus 69 ~~~~~-~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~-------~~~~~---- 133 (212)
+.+.. . ....+.|.|.. ..|....+.+|+.+.|.|.+.+. ..|...+.|++++.. +....
T Consensus 103 ~~~~~~~~~~~~~~~l~V~~-----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 177 (268)
T 3mj6_A 103 IRLKNESMVMKKPVELWVLP-----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177 (268)
T ss_dssp EEETTCCCEEEEEEEEEEEC-----CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSS
T ss_pred EEecCCcceEEEEEEEEEec-----cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCc
Confidence 98742 2 23344555431 23446778999999999999432 224445999984321 11100
Q ss_pred -------CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC---eeEEEEEEe
Q psy13371 134 -------SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD---VASVYVHVL 182 (212)
Q Consensus 134 -------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~---~~~~~~~v~ 182 (212)
....+.....+.......|.|.++..+|+|.|+|.|.|.. ...+.+.|.
T Consensus 178 ~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 236 (268)
T 3mj6_A 178 GKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236 (268)
T ss_dssp CEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence 0000111110000112359999999999999999999973 344455553
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-20 Score=129.43 Aligned_cols=171 Identities=12% Similarity=0.134 Sum_probs=111.7
Q ss_pred CeeEeeeCCCC--CceEEEEeeCccee----eeec---c-eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHI----LTVG---S-YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~----~~~~---~-~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|...... .... . ... ...+|+.+..+...++.+|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 97 (220)
T 2fbj_H 18 LKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCA 97 (220)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChhhCEEEEEE
Confidence 46999999876 68999999753211 1110 0 000 12479998865556788999999999999999999
Q ss_pred ecCCCc----eeEEEEEEEecc----cceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCcee
Q psy13371 69 LSTQPV----RSFFVNLNVVVP----TAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVS 139 (212)
Q Consensus 69 ~~~~~~----~~~~~~l~v~~~----~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~ 139 (212)
+.+... ......|.|... |.....+ ...+..|+.++|.|.+.+. |...+.+.|++++..+...... .
T Consensus 98 ~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~---~ 173 (220)
T 2fbj_H 98 RLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFP---P 173 (220)
T ss_dssp EEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECC---C
T ss_pred EeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecC---c
Confidence 987532 223456777642 2222222 3345789999999999876 4313569999988765211111 1
Q ss_pred EEeecCce-EEEEEEEeeeeecCCEEEEEEcccCCee
Q psy13371 140 VITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNADVA 175 (212)
Q Consensus 140 ~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~ 175 (212)
....++.. ..+.|.|.+...+|.|.|+|.+.|+...
T Consensus 174 ~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~ 210 (220)
T 2fbj_H 174 ALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP 210 (220)
T ss_dssp EECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred eECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCc
Confidence 11223322 2346888888888999999999998544
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=131.90 Aligned_cols=176 Identities=16% Similarity=0.208 Sum_probs=107.8
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee----eec---cee-e--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL----TVG---SYT-Y--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~----~~~---~~~-~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.|.|+|.+..... ... ... + ..++|+.+..+...++.+|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 97 (227)
T 1mju_H 18 VKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCA 97 (227)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcccCEEEEEE
Confidence 46999999887 789999997631111 100 101 0 12479998865566789999999999999999999
Q ss_pred ecCCCc--eeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEE
Q psy13371 69 LSTQPV--RSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVI 141 (212)
Q Consensus 69 ~~~~~~--~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~ 141 (212)
+.+... ......|.|.. +|.....++...+..|+.++|.|.+.+. |.| ..+.|++++..+...... . ..
T Consensus 98 ~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g~~~~~~~~~--~-~~ 173 (227)
T 1mju_H 98 NKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEP-VTLTWNSGSLSSGVHTFP--A-VL 173 (227)
T ss_dssp EEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEECC--C-EE
T ss_pred ECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCC-eEEEEecCCCcCCcEECC--c-ee
Confidence 987531 22345677764 1222222222345679999999999876 443 369999988753211111 1 11
Q ss_pred eecCc-eEEEEEEEeeeeecCCEEEEEEcccCC-eeEEEEEEe
Q psy13371 142 TEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD-VASVYVHVL 182 (212)
Q Consensus 142 ~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~-~~~~~~~v~ 182 (212)
..+. ...+.|.|.+...+| |.|+|.|.|.. .......+.
T Consensus 174 -~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~ 214 (227)
T 1mju_H 174 -QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIE 214 (227)
T ss_dssp -ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred -cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeC
Confidence 1122 123568888887778 99999999973 344444443
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=135.67 Aligned_cols=170 Identities=18% Similarity=0.168 Sum_probs=108.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee---ec-c-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC--CC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT---VG-S-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST--QP 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~-~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~--~~ 73 (212)
+.|.|.+.+.|.+.+.|+|++...... .. . ......+|+.+.. ..+..+|+|.+++.+|+|.|+|.+.+ ..
T Consensus 17 v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~ 94 (212)
T 1nfd_E 17 VKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPEDEAAYYCLSSYGDNN 94 (212)
T ss_dssp CCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCSEEEEEEEETTTT
T ss_pred EEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe--eCCEEEEEECcCCcccCEEEEEEEEcccCc
Confidence 479999999888899999865312111 00 0 0001146777763 44677999999999999999999985 22
Q ss_pred c--eeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce
Q psy13371 74 V--RSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147 (212)
Q Consensus 74 ~--~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (212)
. ......+.|.. +|.....++...+.+|+.++|.|.+.+.+++.+.+.|++++..+....... ......++..
T Consensus 95 ~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~-~~~~~~~~~~ 173 (212)
T 1nfd_E 95 DLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT-KPSKQGQNYM 173 (212)
T ss_dssp EEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC-CCBCSSSCEE
T ss_pred ccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecC-CceecCCCce
Confidence 1 12234566632 233333333334557899999999988743334699999998874321100 0111112222
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+.|.|.++..+|.|.|+|.|.|..
T Consensus 174 ~~s~L~i~~~~~~d~G~Y~C~a~n~~ 199 (212)
T 1nfd_E 174 TSSYLSLTADQWKSHNRVSCQVTHEG 199 (212)
T ss_dssp EEEBCCEEHHHHHTCSCEEEEEECTT
T ss_pred EEEEEEEchhhcCCCCeEEEEEEeCC
Confidence 23559999999999999999999973
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=133.28 Aligned_cols=170 Identities=17% Similarity=0.300 Sum_probs=110.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.+.+.|+|++. .+..... ....... .+...|.|.+++.+|+|.|+|.+.+. +.....+
T Consensus 37 v~L~C~~~~~p~~~v~W~~~~~--~~~~~~~----~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~ 106 (231)
T 3ojm_B 37 VKFRCPAGGNPMPTMRWLKNGK--EFKQEHR----IGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 106 (231)
T ss_dssp EEEECCEEEESCCEEEEEETTE--ECCGGGS----TTCCEEE----GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEecccCCCCeEEEEECCc--ccccccc----ccceeee----cCcceEEEecCCcccCEEEEEEEecccCcccccE
Confidence 4689999999999999999773 2221110 0111111 13457999999999999999999875 3445566
Q ss_pred EEEEeccc---ceee--CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEE----cCeEEEeeCCCCceeEEeecC--ceE
Q psy13371 80 NLNVVVPT---AEIL--GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH----HDEVISYDSSRGGVSVITEKG--EVT 148 (212)
Q Consensus 80 ~l~v~~~~---~~~~--~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~----~~~~~~~~~~~~~~~~~~~~~--~~~ 148 (212)
.+.|...+ +... .+....+..|+.+.|.|.+.+.|.|. +.|++ ++..+....... ........ ...
T Consensus 107 ~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~--v~W~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~ 183 (231)
T 3ojm_B 107 HLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH--IQWIKHVEKNGSKYGPDGLPY-LKVLKHSGINSSN 183 (231)
T ss_dssp EEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCE--EEEEEECCBTTBSBCTTSCBC-EEEEEECSTTCSC
T ss_pred EEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCE--EEEEECCCCCCccccCCCcce-EeEecccccccCC
Confidence 77776532 1222 24567788999999999999887665 99999 565542221111 01111110 011
Q ss_pred EEEEEEeeeeecCCEEEEEEcccCC---eeEEEEEEee
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNAD---VASVYVHVLN 183 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~~---~~~~~~~v~~ 183 (212)
.+.|.|.++..+|+|.|+|.|.|.. ...+.+.|..
T Consensus 184 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 221 (231)
T 3ojm_B 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP 221 (231)
T ss_dssp TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEec
Confidence 1349999999999999999999983 3344555443
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=136.88 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=108.4
Q ss_pred CeeEeeeCCCC-----CceEEEEeeCccee---eeecceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLL-----PTRVSWIRHRDIHI---LTVGSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p-----~~~v~W~~~~~~~~---~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+.+.+ .+.|.|+|++.... ........ ...+|+.+.. ..++.+|+|.+++.+|+|.|.|.+.
T Consensus 52 v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~ 129 (252)
T 3bkj_L 52 ASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG--SGTDFTLRISRVEAEDLGVYYCFQA 129 (252)
T ss_dssp EEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc--cCCEEEEEECCCCcccCEEEEEEEE
Confidence 46999999987 69999999763111 11100000 1146777763 4567799999999999999999998
Q ss_pred CCCc--eeEEEEEEEec---ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC
Q psy13371 71 TQPV--RSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145 (212)
Q Consensus 71 ~~~~--~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 145 (212)
+... ......|.|.. +|.....++...+.+|+.++|.|.+.+.+++...+.|++++..+..............++
T Consensus 130 ~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g 209 (252)
T 3bkj_L 130 SLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDS 209 (252)
T ss_dssp SBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTC
T ss_pred cCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCC
Confidence 8532 12234566654 232333233333446889999999988544434699999998763110000000111122
Q ss_pred c-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 146 E-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 146 ~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
. ...+.|.|.+...+|.|.|+|.|.|+
T Consensus 210 ~~~~~s~L~i~~~~~~d~g~Y~C~a~n~ 237 (252)
T 3bkj_L 210 TYSMSSTLTLTKDEYERHNSYTCEATHK 237 (252)
T ss_dssp CEEEEEEEEEEHHHHHHCCEEEEEEECT
T ss_pred CEEEEEEEEEcchhccCCCeEEEEEEeC
Confidence 2 23456999999999999999999997
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-19 Score=131.86 Aligned_cols=154 Identities=18% Similarity=0.243 Sum_probs=108.1
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEE
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 79 (212)
+.|.|.+. +.|.+.+.|++++. .+. .+.++.+..+...+...|.|.+++.+|+|.|+|.+.+.. .....
T Consensus 125 v~l~C~~~~~~p~~~v~W~~~~~--~i~-------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~ 194 (312)
T 2y23_A 125 VRFWMQAEKLSGNAKVNYIFNEK--EIF-------EGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK-ATNHS 194 (312)
T ss_dssp EEEEEEESCCCSSCEEEEEETTE--EEC-------SSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSS-CEEEE
T ss_pred EEEEEEEEeCCCCCEEEEEECCE--ECe-------eCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCC-ceEEE
Confidence 36899999 88999999999873 222 134666654445667789999999999999999998642 33333
Q ss_pred EEEEec--------------------ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCcee
Q psy13371 80 NLNVVV--------------------PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139 (212)
Q Consensus 80 ~l~v~~--------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~ 139 (212)
.+.+.. .++.+..+....+.+|+.+.|.|.+.+.|.| ..+.|++++..+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~~p~~-~~v~W~~~g~~~~~~~~~---- 269 (312)
T 2y23_A 195 TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE-THIVWYKDEREISVDEKH---- 269 (312)
T ss_dssp EEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEESCCSS-CEEEEEETTEEEEEECCC----
T ss_pred EEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcCCCCC-CEEEEeeCCEECCCCCcE----
Confidence 344321 0111112223678899999999999988665 249999999988643221
Q ss_pred EEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 140 VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 140 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
... .+ ...|.|.++..+|+|.|+|.|.|..
T Consensus 270 ~~~-~~---~~~L~I~~v~~~d~G~Y~C~a~N~~ 299 (312)
T 2y23_A 270 DFK-DG---ICTLLITEFSKKDAGIYEVILKDDR 299 (312)
T ss_dssp -----C---EEEEEECSCSGGGCEEEEEEEESTT
T ss_pred EEE-CC---EEEEEECcCCHHHCEEEEEEEEcCC
Confidence 111 11 2469999999999999999999983
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=132.14 Aligned_cols=166 Identities=17% Similarity=0.256 Sum_probs=103.5
Q ss_pred CeeEeeeCCCCC-----ceEEEEeeCcceeee-e-ccee--eecCCceEEEee-CCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLLP-----TRVSWIRHRDIHILT-V-GSYT--YTSDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p~-----~~v~W~~~~~~~~~~-~-~~~~--~~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+.+.|. +.+.|++++...... . .... ....+|+.+..+ ...++.+|.|.+++.+|+|.|+|.+.
T Consensus 13 v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~ 92 (222)
T 4i0k_A 13 ATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEGSYTCFVS 92 (222)
T ss_dssp EEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGCSCEEEEEE
T ss_pred eEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccCEEEEEEEE
Confidence 468999998764 899999987432211 1 1111 112345555421 12246789999999999999999999
Q ss_pred CCCceeEEEEEEEeccc--ceeeCCCceeeeCCCcEEEEeEE-eeCCCCCceEEEEEc-CeEEEeeCCCCceeEEeecCc
Q psy13371 71 TQPVRSFFVNLNVVVPT--AEILGSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHH-DEVISYDSSRGGVSVITEKGE 146 (212)
Q Consensus 71 ~~~~~~~~~~l~v~~~~--~~~~~~~~~~~~~g~~~~l~C~~-~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~ 146 (212)
+.+..+..+.|.|..++ +.+.......+.+|+.+.|.|.+ .+.|.|. +.|+++ +..+. ............
T Consensus 93 ~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~--v~W~~~~~~~~~----~~~~~~~~~~~~ 166 (222)
T 4i0k_A 93 IQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAE--VFWKDGQGVPLT----GNVTTSQMANER 166 (222)
T ss_dssp ECCCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCE--EEEECTTSCBCC----SEEEEEEEECTT
T ss_pred eCCCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCe--EEEEcCCCccCC----CCcceeEEcCCC
Confidence 76544555566665532 33333344567789999999999 6666555 999984 44331 111111111222
Q ss_pred eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 147 VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+.|.|.++..+|.|.|+|.|.|.
T Consensus 167 ~~~~~l~i~~v~~~d~G~Y~C~a~n~ 192 (222)
T 4i0k_A 167 GLFDVHSVLRVVLGANGTYSCLVRNP 192 (222)
T ss_dssp SCEEEEEEEEEECCTTCEEEEEEEET
T ss_pred CeEEEEEEEEEEeCCCCEEEEEEECC
Confidence 22345888999999999999999998
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-20 Score=133.37 Aligned_cols=154 Identities=17% Similarity=0.182 Sum_probs=105.7
Q ss_pred CeeEeeeCCCCC-ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCE-EEEEEecCCCce--e
Q psy13371 1 MLHQRKLKGLLP-TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQLSTQPVR--S 76 (212)
Q Consensus 1 ~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~--~ 76 (212)
+.|.|.+.+ |. +.+.|++.++..+ .. +.++... .+..|.|.+++.+|+| .|+|.+.+.... +
T Consensus 109 v~l~C~~~~-p~~~~v~W~~~~g~~l-~~-------~~~~~~~-----~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s 174 (290)
T 2o26_X 109 ALVRCPLTD-PQVSQYSLIECDGKSL-PT-------DLTFVPN-----PKAGITIKNVKRAYHRLCVRCAAQRDGTWLHS 174 (290)
T ss_dssp EEECCCBSC-CSCEEEEEEETTSCCC-CT-------TCEEEEE-----TTTEEEEESCCGGGTTCEEEEEEEETTEEEEC
T ss_pred EEEeCcCCC-CCCceEEEEeCCCcCC-CC-------CCceeeC-----CCCCEEEecccHHHCCCEEEEEEEECCceEEe
Confidence 368999997 76 9999975544232 21 2333333 1237899999999999 999999986422 3
Q ss_pred EEEEEEEe----cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEE----eeCCCCceeEEeecCceE
Q psy13371 77 FFVNLNVV----VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS----YDSSRGGVSVITEKGEVT 148 (212)
Q Consensus 77 ~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~----~~~~~~~~~~~~~~~~~~ 148 (212)
..+.|.|. .+|.....+....+.+|+.+.|.|.+.+.|.|. .+.|++++..+. .... ...........
T Consensus 175 ~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~-~i~W~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 250 (290)
T 2o26_X 175 DKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSV-NSMWLKMNPQPQHIAQVKHN---SWHRGDFNYER 250 (290)
T ss_dssp CCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTC-EEEEEEESSSEEECCCEECC---EEEEETTEEEE
T ss_pred EEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcce-eEEEecCCCCCccceeeccc---ccccCceeeEE
Confidence 34677776 344444556666889999999999999876553 489999987631 1111 01111001122
Q ss_pred EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.|.|.++..+|+|.|+|.|.|.
T Consensus 251 ~~~L~I~~v~~~d~G~Y~C~a~N~ 274 (290)
T 2o26_X 251 QETLTISSARVDDSGVFMCYANNT 274 (290)
T ss_dssp EEEEEESSCCSSSCEEEEEEEECS
T ss_pred EEEEEEcCCCcccCeEEEEEEeCC
Confidence 356999999999999999999998
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-19 Score=134.24 Aligned_cols=150 Identities=16% Similarity=0.213 Sum_probs=104.0
Q ss_pred eeEeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC---CceeE
Q psy13371 2 LHQRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ---PVRSF 77 (212)
Q Consensus 2 ~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~~~~ 77 (212)
.+.|.+. +.|.+.+.|++++. .+..........++++.... .|.|.....+|+|.|+|.+.+. .....
T Consensus 136 ~~~C~~~~~~P~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~~s-------~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 207 (313)
T 4fqp_A 136 MARCVSTGGRPPAQITWHSDLG-GMPNTSQVPGFLSGTVTVTS-------LWILVPSSQVDGKNVTCKVEHESFEKPQLL 207 (313)
T ss_dssp EEEEEEEEEBSCCEEEEEETTC-CEEEEEEEECSSTTCEEEEE-------EEEECCCGGGTTCEEEEEEECTTSSSCEEE
T ss_pred EEEEEccCccCCcEEEeecCCc-cccccceeeeecccccccce-------eeeecccccccCeeEEEEEEccCcCcccee
Confidence 4678765 67999999999874 22222222222234444432 6889999999999999999984 23445
Q ss_pred EEEEEEeccccee-eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEee
Q psy13371 78 FVNLNVVVPTAEI-LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 78 ~~~l~v~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.+.|.|..+|... .......+..|+.++|.|.+.+.|.|. .+.|+++++.+. .. .....+ .|.|.+
T Consensus 208 ~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~-~v~W~~~~~~l~----~~---~~~~~~-----~L~i~~ 274 (313)
T 4fqp_A 208 TVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPT-GYNWSTTMGPLP----PF---AVAQGA-----QLLIRP 274 (313)
T ss_dssp EEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCC-EEEEEETTBSCC----TT---EEEETT-----EEEECC
T ss_pred eeecccccCCccccccccceeecCCCeEEEEEEecCCCCCc-EEEEEECCEECC----Cc---eEEeCC-----EEEECc
Confidence 5566666666443 333445567788999999999987662 489999998762 11 111222 499999
Q ss_pred eeecCCEEEEEEcccC
Q psy13371 157 AELKDSGKYSCSPSNA 172 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~ 172 (212)
+..+|+|.|+|.|.|.
T Consensus 275 v~~~d~G~Y~C~a~N~ 290 (313)
T 4fqp_A 275 VDKPINTTLICNVTNA 290 (313)
T ss_dssp CSSCCEEEEEEEEECS
T ss_pred CChhhCEEEEEEEEeC
Confidence 9999999999999998
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=130.18 Aligned_cols=157 Identities=19% Similarity=0.290 Sum_probs=104.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeE--EEEEcccCCCCCEEEEEEecCCC-c-ee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEW--TLHIKWAQKRDAGVYECQLSTQP-V-RS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~-~-~~ 76 (212)
+.|.|.+.+.|.+.+.|++++. .+...... ...+.... ...... .|.|.+++.+|+|.|+|.+.+.. . .+
T Consensus 27 v~l~C~~~~~p~~~v~W~~~~~--~~~~~~~~--~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~ 100 (212)
T 2v9r_A 27 ATLNCKAEGRPTPTIEWYKGGE--RVETDKDD--PRSHRMLL--PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100 (212)
T ss_dssp EEECCEEEEESCCEEEEEETTE--ECCCTTTC--TTCSEEEC--TTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEEC
T ss_pred EEEEEEcCCCCCCEEEEEECCE--Eeeccccc--cccceEEe--cCCcEEEEEEEecCCCcccCeEEEEEEECCCCceee
Confidence 3689999999999999999773 22211100 00011111 111111 34567889999999999999853 1 23
Q ss_pred EEEEEEEeccc-ceeeCCCceeeeCCCcEEEEeEE-eeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEE
Q psy13371 77 FFVNLNVVVPT-AEILGSPDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154 (212)
Q Consensus 77 ~~~~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~-~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 154 (212)
..+.|.|...+ .....+....+..|+.+.|.|.+ .+.|.|. +.|++++..+.... .+ .....+ .|.|
T Consensus 101 ~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~--v~W~~~~~~l~~~~---~~-~~~~~~-----~L~i 169 (212)
T 2v9r_A 101 HDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPT--ISWKKDGSPLDDKD---ER-ITIRGG-----KLMI 169 (212)
T ss_dssp CCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCE--EEEEETTEEECTTS---TT-EEEETT-----EEEE
T ss_pred cceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCE--EEEEECCccCCCCc---ce-EEccCC-----eEEE
Confidence 45666776533 34445566788999999999998 7776665 99999998874221 11 122222 4999
Q ss_pred eeeeecCCEEEEEEcccCCe
Q psy13371 155 QQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 155 ~~~~~~d~g~y~C~~~n~~~ 174 (212)
.++..+|.|.|+|.|.|..+
T Consensus 170 ~~~~~~d~G~Y~C~a~N~~g 189 (212)
T 2v9r_A 170 TYTRKSDAGKYVCVGTNMVG 189 (212)
T ss_dssp SSCCGGGCEEEEEEEEETTE
T ss_pred eeCCHhhCeeEEEEEecccC
Confidence 99999999999999999844
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=132.38 Aligned_cols=170 Identities=16% Similarity=0.150 Sum_probs=105.2
Q ss_pred CeeEeee-CCCC-CceEEEEeeCcceeee---ec--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKL-KGLL-PTRVSWIRHRDIHILT---VG--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~-~~~p-~~~v~W~~~~~~~~~~---~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+ .+.+ .+.|.|+|++...... .. .......+|+.... ..+..+|+|.+++.+|+|.|.|.+.+..
T Consensus 18 v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 95 (216)
T 2xzc_L 18 VTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK--SGTSATLGITGLQTGDEADYYCGTWDSS 95 (216)
T ss_dssp EEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEEECTT
T ss_pred EEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec--cCCEEEEEECCCCcccCEEEEEEEEeCC
Confidence 4699995 4443 6899999965311110 00 00001145777763 4567799999999999999999999863
Q ss_pred c---eeEEEEEEEec---ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-
Q psy13371 74 V---RSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE- 146 (212)
Q Consensus 74 ~---~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~- 146 (212)
. ......|.|.. +|.....++......|+.++|.|.+.+.+++...+.|++++..+..............++.
T Consensus 96 ~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~ 175 (216)
T 2xzc_L 96 LNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTY 175 (216)
T ss_dssp SCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCE
T ss_pred CcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCE
Confidence 2 22344566653 2323332222223458899999999885434346999999987632100000000111222
Q ss_pred eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 147 VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+.|.|.+...+|.|.|+|.|.|.
T Consensus 176 ~~~s~L~i~~~~~~d~g~Y~C~a~n~ 201 (216)
T 2xzc_L 176 SLSSTLTLSKADYEKHKVYACEVTHQ 201 (216)
T ss_dssp EEEEEEEEEHHHHTTCCEEEEEEECT
T ss_pred EEEEEEEECHHHhCCCCcEEEEEEcC
Confidence 23356999999999999999999997
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=130.41 Aligned_cols=151 Identities=11% Similarity=0.055 Sum_probs=101.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC---ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP---VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~ 77 (212)
+.|.|.+.+ +.+.+.|+|++.. +.. ... ..........|.|.+++.+|+|.|+|.+.+.. ..+.
T Consensus 22 v~L~C~~~~-~~~~~~w~k~g~~-~~~-~~~----------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~ 88 (196)
T 3p2t_A 22 VTIWCQGTL-EAREYRLDKEESP-APW-DRQ----------NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSD 88 (196)
T ss_dssp EEEEEECCT-TCCEEEEEETTSC-SCS-EEE----------CCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCC
T ss_pred EEEEeeCCC-CCCEEEEEECCCC-Ccc-ccc----------ccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCc
Confidence 469999998 6789999998742 111 100 00012356789999999999999999998853 2355
Q ss_pred EEEEEEecc--cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe
Q psy13371 78 FVNLNVVVP--TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 78 ~~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.+.|.|... ++.+...+...+.+|+.++|.|.+.+.+ + .+.|++++..+..... .... ........|.|.
T Consensus 89 ~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~-~--~~~w~k~g~~~~~~~~---~~~~--~~~~~~~~L~i~ 160 (196)
T 3p2t_A 89 PLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPM-D--TFLLCKERAAHPLLCL---RSEH--GAQQHQAEFPMS 160 (196)
T ss_dssp CEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEEE-E--EEEEEETTCCCGGGSE---EEEE--EEEEEEEEEEEC
T ss_pred cEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCCC-C--EEEEEeCCCcccceee---cccc--cccCcceEEEeC
Confidence 667777642 2333322334678999999999998642 3 4899999875521110 0000 001122459999
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
++..+|+|.|+|.|.|.
T Consensus 161 ~v~~~d~G~Y~C~a~n~ 177 (196)
T 3p2t_A 161 PVTSVHGGTYRCFSSHG 177 (196)
T ss_dssp SCCGGGCEEEEEEEECG
T ss_pred CCcccCCCeEEEEEEcC
Confidence 99999999999999986
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=145.26 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=107.0
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcceeeeeccee---eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCcee
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDIHILTVGSYT---YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRS 76 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 76 (212)
+.|.|.+. +.|.+.+.|+|++. .+ ...... .....+... ....|.|.+++.+|+|.|+|.+.|. .+
T Consensus 245 v~L~C~~~~g~p~p~i~W~k~g~-~l-~~~~~~~~~~~~~~~~~~------~~~~L~I~~v~~~DsG~Y~C~a~N~--~~ 314 (527)
T 3qs9_E 245 LWIRCKAVHVNHGFGLTWELENK-AL-EEGNYFEMSTYSTNRTMI------RILFAFVSSVARNDTGYYTCSSSKH--PS 314 (527)
T ss_dssp EEEEEEEEESSSCCCEEEECSSS-CC-CGGGEEEEEEEETTTEEE------EEEEEEESSCCGGGCEEEEEEETTE--EE
T ss_pred EEEEEEEccCCCCeEEEEEECCE-EC-CCCceeeeeeeccCccee------eEEEEEEccCCcccCeEEEEEEEeC--CC
Confidence 36899997 89999999999874 22 111100 000111111 2346999999999999999999987 66
Q ss_pred EEEEEEEecccceeeCC--CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEE
Q psy13371 77 FFVNLNVVVPTAEILGS--PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154 (212)
Q Consensus 77 ~~~~l~v~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 154 (212)
..+.|.|..++.....+ ....+.+|+.+.|.|.+.+.|.|. +.|++++..+...... .. .+ ..|.|
T Consensus 315 ~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~--i~W~k~g~~l~~~~~~-----~~-~~----~~L~I 382 (527)
T 3qs9_E 315 QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR--CTWTFSRKSFPCEQKG-----LD-NG----YSISK 382 (527)
T ss_dssp EEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCE--EEEEETTEEEECBCCB-----CS-SS----SEEEE
T ss_pred ceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCE--EEEEECCEECcCCccc-----cc-CC----cEEEE
Confidence 77788887766444333 235678899999999999988776 9999999988533211 11 11 24889
Q ss_pred eeeeecCCEEEEEEcccC
Q psy13371 155 QQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 155 ~~~~~~d~g~y~C~~~n~ 172 (212)
.++..+|+|.|+|.|.|.
T Consensus 383 ~~v~~~D~G~YtC~A~N~ 400 (527)
T 3qs9_E 383 FCNHKHQPGEYIFHAEND 400 (527)
T ss_dssp ECCCTTCCSCEEEEEEET
T ss_pred ecCCcccCEEEEEEEEeC
Confidence 999999999999999998
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=132.07 Aligned_cols=168 Identities=16% Similarity=0.258 Sum_probs=108.4
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce-ee---eec---c-eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH-IL---TVG---S-YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~-~~---~~~---~-~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|..... .. ... . ... ...+|+.+..+...++.+|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 97 (225)
T 1op3_H 18 LILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCA 97 (225)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChhhCEEEEEE
Confidence 46999999876 7899999975211 11 110 0 001 12479998866556788999999999999999999
Q ss_pred ecCCC------c---eeEEEEEEEecc----cceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCC
Q psy13371 69 LSTQP------V---RSFFVNLNVVVP----TAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSS 134 (212)
Q Consensus 69 ~~~~~------~---~~~~~~l~v~~~----~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~ 134 (212)
+.+.. . ....+.|.|... |.....++...+..|+.+.|.|.+.+. |.| ..+.|++++..+.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~~~~~~~~ 176 (225)
T 1op3_H 98 RKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP-VTVSWNSGALTSGVHTF 176 (225)
T ss_dssp EECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSC-CEEECCTTSCCTTCEEC
T ss_pred EecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCC-eEEEEecCCCcCCeEec
Confidence 98853 1 113457777652 222222222235679999999999876 433 36999998865311000
Q ss_pred CCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 135 RGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 135 ~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
. .....++. ...+.|.|.+...+| |.|+|.|.|..
T Consensus 177 -~--~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~ 212 (225)
T 1op3_H 177 -P--AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 212 (225)
T ss_dssp -C--CEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGG
T ss_pred -C--ceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCC
Confidence 0 01122222 233568888887778 99999999973
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-20 Score=133.03 Aligned_cols=152 Identities=22% Similarity=0.328 Sum_probs=108.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~ 78 (212)
+.|.|.+.+.|. .+.|++.++..+.. +.|+.+.. ......|.|.+++.+|+|.|+|.+.+.. ..+..
T Consensus 22 v~l~C~~~~~p~-~v~W~~~~g~~~~~--------~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~ 90 (291)
T 2wim_A 22 KFFTCTAIGEPE-SIDWYNPQGEKIIS--------TQRVVVQK--EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 90 (291)
T ss_dssp EEEEEEEESCCS-EEECBCTTCCBCCC--------BTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEE
T ss_pred EEEEEEEeCCCC-ceEEECCCCcCccC--------CCcEEEec--CCCEEEEEEccCCcccCEEEEEEEecccCceEEEE
Confidence 468999999885 89999955433322 34555542 2346689999999999999999999853 22456
Q ss_pred EEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 79 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
+.|.|..++.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+.... ..+......+ .|.|.++.
T Consensus 91 ~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~--v~W~~~~~~~~~~~--~~~~~~~~~~-----~L~i~~v~ 161 (291)
T 2wim_A 91 VVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPA--VSWLYHNEEVTTIS--DNRFAMLANN-----NLQILNIN 161 (291)
T ss_dssp EEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCE--EEEECC----CBCC--CSSEEECTTS-----CEEETTCC
T ss_pred EEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCE--EEEEECCccccccC--CceEEEccCC-----CEEEEecc
Confidence 677777666655566677899999999999998776565 99999987664221 1222233333 39999999
Q ss_pred ecCCEEEEEEcccC
Q psy13371 159 LKDSGKYSCSPSNA 172 (212)
Q Consensus 159 ~~d~g~y~C~~~n~ 172 (212)
.+|.|.|+|.+.|.
T Consensus 162 ~~d~G~Y~C~~~n~ 175 (291)
T 2wim_A 162 KSDEGIYRCEGRVE 175 (291)
T ss_dssp GGGCEEEEEEEEET
T ss_pred hhhCEEEEEEEEEC
Confidence 99999999999986
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=125.24 Aligned_cols=147 Identities=15% Similarity=0.164 Sum_probs=98.6
Q ss_pred CeeEeeeCC--CCCceEEEEeeCcceeeee--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cce
Q psy13371 1 MLHQRKLKG--LLPTRVSWIRHRDIHILTV--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVR 75 (212)
Q Consensus 1 ~~l~C~~~~--~p~~~v~W~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 75 (212)
+.|.|...+ .+.+.|.|+|++. .+... +......++|+.+. .+++|+|.+++.+|+|.|+|.+.+. +..
T Consensus 14 v~L~c~~~~~~~~~~~i~W~k~~~-~i~~~~~~~~~~~~~~r~~~~-----~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~ 87 (176)
T 1hng_A 14 INLNIPNFQMTDDIDEVRWERGST-LVAEFKRKMKPFLKSGAFEIL-----ANGDLKIKNLTRDDSGTYNVTVYSTNGTR 87 (176)
T ss_dssp EEECCTTCCCCTTEEEEEEEETTE-EEEEEETTSCCEESSTTEEEC-----TTSCEEESSCCGGGCEEEEEEEEETTCCE
T ss_pred EEEcCCCCCcccccccEEEEeCCc-eeEEEcCCCeecCCCCeEEEC-----CCCcEEEcccccccCEEEEEEEEeCCCCE
Confidence 368895433 5678999999874 22211 11112235677774 2335999999999999999999985 332
Q ss_pred --eEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEE
Q psy13371 76 --SFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 76 --~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (212)
+..+.|.|..++.. +.. ...+..+.|.|.+.+.|.|. +.|++++..+..... +.
T Consensus 88 ~~~~~~~l~V~~~~~~----p~i-~~~~~~v~L~C~~~g~p~p~--i~W~~~g~~l~~~~~-----------------~~ 143 (176)
T 1hng_A 88 ILNKALDLRILEMVSK----PMI-YWECSNATLTCEVLEGTDVE--LKLYQGKEHLRSLRQ-----------------KT 143 (176)
T ss_dssp EEEEEEEEEEECCCCC----CEE-EEETTTTEEEEECSSCSSCE--EEEEETTEEEEEESS-----------------SE
T ss_pred EEEEEEEEEEeCCCCC----CEE-EecCCcEEEEEEecCCCCcE--EEEEECCEECCCCCc-----------------EE
Confidence 55567777654211 111 22345699999998887655 999999987743221 34
Q ss_pred EeeeeecCCEEEEEEcccCCeeEE
Q psy13371 154 IQQAELKDSGKYSCSPSNADVASV 177 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~~~~~~ 177 (212)
|..+..+|.|.|+|.|.|..+...
T Consensus 144 i~~~~~~d~G~Y~C~a~N~~g~~~ 167 (176)
T 1hng_A 144 MSYQWTNLRAPFKCKAVNRVSQES 167 (176)
T ss_dssp EEEECSCCSSCEEEEEEETTEEEE
T ss_pred EEEEEccCCeEEEEEEEecCCCce
Confidence 446778999999999999855443
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-20 Score=144.31 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=112.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----ecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----VGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-- 73 (212)
+.|.|.+.+.|.+.+.|+|++...... ... .....++|+... ......+|+|.+++.+|+|.|+|.+.+..
T Consensus 18 v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 95 (523)
T 2rcj_C 18 VTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGS--KSGTSASLAISGLEAEDESDYYCASWNSSDN 95 (523)
T ss_pred EEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEe--cCCCEEEEEECCCChhhCEEEEEEEccCCCc
Confidence 469999999999999999975211111 000 001123577643 45567899999999999999999999852
Q ss_pred --ceeEEEEEEEe----cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce
Q psy13371 74 --VRSFFVNLNVV----VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147 (212)
Q Consensus 74 --~~~~~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (212)
.....+.|.|. .+|.....+....+.+|+.+.|.|.+.+.+.+...+.|++++..+....... ......++..
T Consensus 96 ~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~-~~~~~~~~~~ 174 (523)
T 2rcj_C 96 SYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT-KPSKQSNNKY 174 (523)
T ss_pred cccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEec-cccccCCCCE
Confidence 12344567773 2343444455556678999999999998765544699999998763211000 0011122221
Q ss_pred -EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 148 -TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 148 -~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+.|.|.++..+|.|.|+|.|.|.
T Consensus 175 ~~~s~L~i~~~~~~d~G~Y~C~a~n~ 200 (523)
T 2rcj_C 175 AASSYLSLTPEQWKSHRSYSCQVTHE 200 (523)
T ss_pred EEEEEEEEechhcCCCceEEEEEEec
Confidence 2356999999999999999999986
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=126.42 Aligned_cols=176 Identities=13% Similarity=0.156 Sum_probs=113.4
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeeec---------ce---eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTVG---------SY---TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~---------~~---~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.+.+.+ .+.+.|+|.........- .. .....+|+.+..+...+.++|+|.+++.+|+|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~ 97 (221)
T 3m8o_H 18 LKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLKSDDTAMYY 97 (221)
T ss_dssp EEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred EEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCCHHHCEEEE
Confidence 46999999854 689999986532211100 00 00124799998766677889999999999999999
Q ss_pred EEecCCC---ceeEEEEEEEec----cccee-eCCCceeeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEEeeCCCCc
Q psy13371 67 CQLSTQP---VRSFFVNLNVVV----PTAEI-LGSPDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVISYDSSRGG 137 (212)
Q Consensus 67 C~~~~~~---~~~~~~~l~v~~----~~~~~-~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~~~~~~ 137 (212)
|.+.+.. .......|.|.. +|... ..+... .+|+.++|.|.+.+ .|.....+.|++++..+......
T Consensus 98 C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~-- 173 (221)
T 3m8o_H 98 CVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFP-- 173 (221)
T ss_dssp EEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECC--
T ss_pred EEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcC--
Confidence 9998752 223345666652 12222 223322 68999999999988 44313469999988766322111
Q ss_pred eeEE-eecCce-EEEEEEEeeeeecCCEEEEEEcccCCeeEEEEEE
Q psy13371 138 VSVI-TEKGEV-TTSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181 (212)
Q Consensus 138 ~~~~-~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~v 181 (212)
... ..++.. ..+.|.|.+...+|.|.|+|.+.|+......+.+
T Consensus 174 -~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~~~~v 218 (221)
T 3m8o_H 174 -PSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTV 218 (221)
T ss_dssp -CEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCEEEEE
T ss_pred -ceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCceeeec
Confidence 011 122222 2356889888888999999999998654444433
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=140.91 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=112.6
Q ss_pred CeeEeeeCCCCCce-EEEEeeCcce-eeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLLPTR-VSWIRHRDIH-ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~-v~W~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.+.|.|. +.|+|++... +..........+.+. .....|.|.+++.+|+|.|+|.+.+. +....
T Consensus 229 v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 301 (524)
T 2ec8_A 229 FTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY-------ERQATLTISSARVNDSGVFMCYANNTFGSANV 301 (524)
T ss_dssp EEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCE-------EEEEEEEESSCCTTTCEEEEEEEECSSCEEEE
T ss_pred EEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCcc-------ceEEEEEECCCCHHHCEEEEEEEEecCCceEE
Confidence 36899999998887 9999988531 111111111111011 13458999999999999999999985 45566
Q ss_pred EEEEEEecccceeeCC---CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC--ceEEEEE
Q psy13371 78 FVNLNVVVPTAEILGS---PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG--EVTTSYL 152 (212)
Q Consensus 78 ~~~l~v~~~~~~~~~~---~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l 152 (212)
.+.|.|..+|.....+ ....+.+|+.+.|.|.+.+.|.|. .+.|++++..+..... .......+ ....+.|
T Consensus 302 ~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~-~v~W~k~g~~~~~~~~---~~~~~~~~~~~~~~~~L 377 (524)
T 2ec8_A 302 TTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPE-HQQWIYMNRTFTDKWE---DYPKSENESNIRYVSEL 377 (524)
T ss_dssp EEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCC-EEEEESSSCBCSSSBC---CEESCCSSSCCEEEEEE
T ss_pred EEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCc-EEEEEECCeeccCCcc---ceeEEccCCCceeEEEE
Confidence 7788888776554433 357889999999999998886654 5899999987632211 11111111 1234579
Q ss_pred EEeeeeecCCEEEEEEcccC
Q psy13371 153 LIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|.++..+|+|.|+|.|.|.
T Consensus 378 ~i~~v~~~d~G~Y~C~a~N~ 397 (524)
T 2ec8_A 378 HLTRLKGTEGGTYTFLVSNS 397 (524)
T ss_dssp EECSCCGGGCEEEEEEEECS
T ss_pred EEeecCcccCeEEEEEEEec
Confidence 99999999999999999998
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-21 Score=130.32 Aligned_cols=137 Identities=16% Similarity=0.258 Sum_probs=92.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcc-cCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKW-AQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.+ +. .+.|+|++. .+... .+..|.|.+ ++.+|+|.|+|.+.+. +..+..
T Consensus 17 v~L~C~~~~-~~-~i~W~k~g~--~l~~~------------------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~ 74 (186)
T 1jbj_A 17 VELTCPLDS-DE-NLKWEKNGQ--ELPQK------------------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLY 74 (186)
T ss_dssp EEEECSSCC-CT-TCEEEETTE--EECSC------------------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEE
T ss_pred EEEEEeCCC-CC-ceEEEECCE--ECCCC------------------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEE
Confidence 368999998 44 499999873 22211 123799999 9999999999999986 333333
Q ss_pred EEEEEeccccee----------------eCCC------c---eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeC
Q psy13371 79 VNLNVVVPTAEI----------------LGSP------D---LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS 133 (212)
Q Consensus 79 ~~l~v~~~~~~~----------------~~~~------~---~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~ 133 (212)
..+.|....... ..+. . ..+.+|+.+.|.|.+ |.|. +.|++++..+....
T Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~--i~W~k~g~~i~~~~ 149 (186)
T 1jbj_A 75 LKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKT--IKWLKDGSIISPLN 149 (186)
T ss_dssp ECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSC--EEEEETTEECCCSS
T ss_pred EEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCe--EEEEECCEECcccC
Confidence 333332211100 0000 0 123489999999998 5566 99999998874211
Q ss_pred CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCeeEE
Q psy13371 134 SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASV 177 (212)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~ 177 (212)
. .. ..|.|.++..+|+|.|+|.|.|..+..+
T Consensus 150 ~--------~~-----~~L~i~~v~~~D~G~Y~C~a~N~~g~~l 180 (186)
T 1jbj_A 150 A--------TK-----NTWNLGNNAKDPRGTYQCQGAKETSNPL 180 (186)
T ss_dssp C--------CS-----SCCEEEETTSCCEEEEEEEESSCEEEEE
T ss_pred C--------Cc-----ceEEECCCCcCcCEEEEEEEEcCcCCcE
Confidence 1 11 2399999999999999999999966553
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=131.60 Aligned_cols=170 Identities=15% Similarity=0.204 Sum_probs=109.4
Q ss_pred CeeEeeeCCCC--CceEEEEeeCccee----eeec---ce---eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHI----LTVG---SY---TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~----~~~~---~~---~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|...... .... .. ....++|+.+..+...+..+|+|.+++.+|+|.|+|.
T Consensus 40 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 119 (291)
T 2gki_A 40 VKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSEDSAVYYCA 119 (291)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEE
Confidence 36899999876 68999999753111 1100 00 0012478888755455678999999999999999999
Q ss_pred ecCCC----ce--eEEEEEEEecc---------------cc-eeeCCCceeeeCCCcEEEEeEEeeCCCCC----ceEEE
Q psy13371 69 LSTQP----VR--SFFVNLNVVVP---------------TA-EILGSPDLHVDEGSTINLTCSIKYSPEPP----AYIFW 122 (212)
Q Consensus 69 ~~~~~----~~--~~~~~l~v~~~---------------~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~p~----~~v~W 122 (212)
+.+.. .. .....|.|..+ +. ....+....+.+|+.++|.|.+.+.+.+. ..+.|
T Consensus 120 ~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W 199 (291)
T 2gki_A 120 RGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAW 199 (291)
T ss_dssp EECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEE
T ss_pred EeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEE
Confidence 98752 11 12346677651 22 23345567799999999999998765541 14999
Q ss_pred EEcC--eE---EEeeC-----CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 123 YHHD--EV---ISYDS-----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 123 ~~~~--~~---~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+++. .. +.... ....+......+ ....|.|.+++.+|+|.|+|.+.|.
T Consensus 200 ~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~DsG~Y~C~a~~~ 257 (291)
T 2gki_A 200 YQQKPGQSPKLLIYWASTRESGVPDRFTGSGSG--TDFTLTISSVQAEDLAVYYCKQSYY 257 (291)
T ss_dssp EEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGGGCEEEEEEEEET
T ss_pred EEECCCCCcEEEEEEcccCCCCcCCCEEEEecC--CEEEEEECCCCHHHCEEEEEEEccC
Confidence 9863 21 11110 001122222222 1246999999999999999999985
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=129.52 Aligned_cols=152 Identities=12% Similarity=0.085 Sum_probs=97.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC----cee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP----VRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~ 76 (212)
+.|.|.+.+.|. .+.|+|++. .+..... .+. .......|.|.+++.+|+|.|+|.+.+.. ..+
T Consensus 22 v~L~C~~~~~~~-~~~W~k~g~-~~~~~~~------~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s 88 (198)
T 1ugn_A 22 VTLRCQGGQETQ-EYRLYREKK-TAPWITR------IPQ-----ELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESS 88 (198)
T ss_dssp EEEEEECCTTCC-CEEEEESSS-CCHHHHT------SCH-----HHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCC
T ss_pred EEEEEEecCCCc-EEEEEECCc-ccccccc------ccc-----cCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCC
Confidence 468999999876 799999874 2211000 000 01133479999999999999999998753 335
Q ss_pred EEEEEEEecc--cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEE
Q psy13371 77 FFVNLNVVVP--TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154 (212)
Q Consensus 77 ~~~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 154 (212)
..+.|.|... ++.+...+...+.+|+.++|.|.+.+. .+ .+.|++++..+..... .......+ .....|.|
T Consensus 89 ~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~~--~v~W~k~g~~~~~~~~---~~~~~~~~-~~~~~L~i 161 (198)
T 1ugn_A 89 DPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA-FD--GFILCKEGEDEHPQCL---NSQPHARG-SSRAIFSV 161 (198)
T ss_dssp CCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSC-CS--EEEEEEC------CEE---EC-------CCEEEEEE
T ss_pred ccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCC-Cc--EEEEEECCCccCCccc---cccccCCC-cceeEEEe
Confidence 5677777762 233333334578899999999999876 44 4999999886531110 00011111 01245999
Q ss_pred eeeeecCCEEEEEEcccC
Q psy13371 155 QQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 155 ~~~~~~d~g~y~C~~~n~ 172 (212)
.++..+|+|.|+|.|.|.
T Consensus 162 ~~v~~~D~G~Y~C~a~n~ 179 (198)
T 1ugn_A 162 GPVSPSRRWWYRCYAYDS 179 (198)
T ss_dssp CCCCTTSCEEEEEEEECT
T ss_pred cccCcccCeEEEEEEEeC
Confidence 999999999999999986
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=135.68 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=104.8
Q ss_pred CeeEeeeCCCCC-ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeE
Q psy13371 1 MLHQRKLKGLLP-TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~ 77 (212)
+.|.|.+.+.+. +.+.|+++++..+.. +.++... .+..|.|.+++.+|+|.|+|.+.+.. ..+.
T Consensus 107 v~l~C~~~~~~~~~~v~W~~~~~~~~~~--------~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~ 173 (292)
T 4dkd_C 107 ALLPCLLTDPVLEAGVSLVRVRGRPLMR--------HTNYSFS-----PWHGFTIHRAKFIQSQDYQCSALMGGRKVMSI 173 (292)
T ss_dssp EECCEEESSGGGGSSEEEEEGGGCCCCS--------SCCEECC-----SSSCCEETTCCGGGCSEEEEEECSTTSCEECC
T ss_pred EEEeeeCCCCCcceeEEEEecCCCcccc--------CCccccc-----CCceEEECCCCHHHCeEEEEEEEeCCCceeEE
Confidence 368999998332 789999975433221 2233322 12249999999999999999999753 2344
Q ss_pred EEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEE
Q psy13371 78 FVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 78 ~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (212)
.+.|.|.. +|.....+....+.+|+.+.|.|.+.+.| +...+.|.+++..+.... ............+.|.
T Consensus 174 ~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~-~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~~L~ 248 (292)
T 4dkd_C 174 SIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVD-VNFDVFLQHNNTKLAIPQ----QSDFHNNRYQKVLTLN 248 (292)
T ss_dssp CEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESS-SCCEEECCBSSCCCCCCB----EEEEETTEEEEEEEEE
T ss_pred EEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCC-CceEEEEeCCCcccccCc----cceeccceeeeEEEEE
Confidence 67788876 55555556666677999999999999765 444578888776552111 1111111111235699
Q ss_pred EeeeeecCCEEEEEEcccC
Q psy13371 154 IQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~ 172 (212)
|.++..+|+|.|+|.|.|.
T Consensus 249 i~~v~~~d~G~Y~C~a~N~ 267 (292)
T 4dkd_C 249 LDQVDFQHAGNYSCVASNV 267 (292)
T ss_dssp ESSCCTTSCEEEEEEEECS
T ss_pred ECccChhcCeEEEEEEecC
Confidence 9999999999999999998
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-19 Score=140.39 Aligned_cols=181 Identities=20% Similarity=0.283 Sum_probs=122.5
Q ss_pred CeeEeeeCCCCCc---eEEEEeeCcc----eeeeecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPT---RVSWIRHRDI----HILTVGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~---~v~W~~~~~~----~~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.|.+ .+.|+|++.. .+...... ....++|+.+..+...+...|+|.+++.+|+|.|+|.+.+.
T Consensus 18 v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~ 97 (585)
T 2ocw_A 18 VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGIN 97 (585)
T ss_pred EEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccC
Confidence 4699999998654 8999998742 11111111 11124677776444566788999999999999999999875
Q ss_pred -CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEE---eeC------CCCceeEEe
Q psy13371 73 -PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS---YDS------SRGGVSVIT 142 (212)
Q Consensus 73 -~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~---~~~------~~~~~~~~~ 142 (212)
+..+..+.|.|..+|.....+....+.+|+.+.|.|.+.+.+ +...+.|++++.... ... ....+....
T Consensus 98 ~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
T 2ocw_A 98 SRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTEN-AQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLD 176 (585)
T ss_pred CCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCC-CCccEEEEECCCCCceEEecCCcccCccccCcEEEE
Confidence 345677888888887766667778899999999999998654 233489999875321 010 001122222
Q ss_pred ecC-ceEEEEEEEeeeeecCCEEEEEEcccC---CeeEEEEEEe
Q psy13371 143 EKG-EVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182 (212)
Q Consensus 143 ~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~---~~~~~~~~v~ 182 (212)
..+ ......|.|.++..+|+|.|+|.+.|. ....+.+.|.
T Consensus 177 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 220 (585)
T 2ocw_A 177 IQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVL 220 (585)
T ss_pred eccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEc
Confidence 222 112235999999999999999999987 3344555554
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-20 Score=128.64 Aligned_cols=167 Identities=16% Similarity=0.253 Sum_probs=107.0
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce----eeeecc------eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH----ILTVGS------YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~----~~~~~~------~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.+.+.+ .+.+.|+|.+... +..... ... ...+|+.+..+...++.+|+|.+++.+|+|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 97 (220)
T 1pz5_B 18 MKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRAEDTGIYY 97 (220)
T ss_dssp EEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred EEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCCHHHCEEEE
Confidence 36999999876 7899999975311 111100 001 114788887655557789999999999999999
Q ss_pred EEecCCC----ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCc
Q psy13371 67 CQLSTQP----VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGG 137 (212)
Q Consensus 67 C~~~~~~----~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~ 137 (212)
|.+.+.. .......|.|.. +|.....++...+.+|+.++|.|.+.+. |.| ..+.|++++..........
T Consensus 98 C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~~~~~~~~~~- 175 (220)
T 1pz5_B 98 CTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEP-VTVKWNYGALSSGVRTVSS- 175 (220)
T ss_dssp EEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSC-CEEEEGGGTCCTTEEECCC-
T ss_pred EEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCC-eEEEEecCCcccceEEcCC-
Confidence 9999853 111345677763 2222222333346789999999999987 555 2599998876310000000
Q ss_pred eeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 138 VSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 138 ~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.. ..+. ...+.|.|.+...++ |.|+|.|.|..
T Consensus 176 --~~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~ 208 (220)
T 1pz5_B 176 --VL-QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPA 208 (220)
T ss_dssp --EE-ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGG
T ss_pred --cc-cCCeEEEEEEEEEcchhcCC-ceEEEEEEECC
Confidence 01 1121 123568888877766 99999999984
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-20 Score=130.36 Aligned_cols=171 Identities=14% Similarity=0.194 Sum_probs=109.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeec---ceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVG---SYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~---~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+.+.+.+.|.|+|..... +.... ...... .+|+.+..+ ..+.++|+|.+++.+|+|.|.|.+.
T Consensus 19 v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~ 97 (246)
T 4dzb_B 19 VKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLSTLTVTSAHPEDSSFYICSAR 97 (246)
T ss_dssp EEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE-ETTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec-CCCEEEEEECCCCHHHCEEEEEEEe
Confidence 469999999999999999943211 11111 011111 268887753 3567899999999999999999998
Q ss_pred CCC-----ceeEEEEEEEec------ccc-eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCce
Q psy13371 71 TQP-----VRSFFVNLNVVV------PTA-EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGV 138 (212)
Q Consensus 71 ~~~-----~~~~~~~l~v~~------~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~ 138 (212)
+.. .......|.|.. +|. .+..+....+.+|+.++|.|.+.+.+++...+.|++++..+.........
T Consensus 98 ~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~ 177 (246)
T 4dzb_B 98 TSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQ 177 (246)
T ss_dssp CSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSS
T ss_pred cCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCcccccc
Confidence 642 122344666754 222 22334444566799999999999876554569999999877321100000
Q ss_pred eEEe----ecCce-EEEEEEEeeeeecC-CEEEEEEcccC
Q psy13371 139 SVIT----EKGEV-TTSYLLIQQAELKD-SGKYSCSPSNA 172 (212)
Q Consensus 139 ~~~~----~~~~~-~~~~l~i~~~~~~d-~g~y~C~~~n~ 172 (212)
.... .++.. ..+.|.|.....+| .|.|+|.|.|+
T Consensus 178 ~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~ 217 (246)
T 4dzb_B 178 PLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFY 217 (246)
T ss_dssp CEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred cccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEec
Confidence 0000 12221 23458887777777 99999999987
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=132.59 Aligned_cols=154 Identities=11% Similarity=0.116 Sum_probs=105.2
Q ss_pred eeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 2 LHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
.|.|.. .+.|.+.+.|+|++. .+. .+.|+.+.. ......|.|.+++.+|+|.|+|.+.+.........
T Consensus 20 ~l~~~~~~~~p~~~v~W~k~~~--~i~-------~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~ 88 (312)
T 2y23_A 20 SLNFECDKMTPKSEFSWSKDYV--STE-------DSPRLEVES--KGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL 88 (312)
T ss_dssp EEEEECSSCCTTCCEEEEETTE--ECT-------TCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEE
T ss_pred EEEEEEeCCCCCcEEEEEECCE--ECC-------CCCCEEEEE--eCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEE
Confidence 355555 457899999999873 222 134666652 34557999999999999999999998632333455
Q ss_pred EEEec------------ccceeeCC-CceeeeCCCcEEEEeEEe-eCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc
Q psy13371 81 LNVVV------------PTAEILGS-PDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146 (212)
Q Consensus 81 l~v~~------------~~~~~~~~-~~~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 146 (212)
+.+.. +|.....+ ....+.+|+.+.|.|.+. +.|.+. +.|++++..+... .+........
T Consensus 89 l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~--v~W~~~~~~i~~~----~~~~~~~~~~ 162 (312)
T 2y23_A 89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAK--VNYIFNEKEIFEG----PKYKMHIDRN 162 (312)
T ss_dssp ECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCE--EEEEETTEEECSS----SSCEEEEETT
T ss_pred EEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCE--EEEEECCEECeeC----CcEEEEEccC
Confidence 55532 33222222 266788999999999998 555554 9999999887422 2222222211
Q ss_pred eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 147 VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.....|.|.++..+|+|.|+|.+.+.
T Consensus 163 ~~~~~L~i~~~~~~d~G~Y~C~~~~~ 188 (312)
T 2y23_A 163 TGIIEMFMEKLQDEDEGTYTFQLQDG 188 (312)
T ss_dssp TTEEEEEESCCCGGGCEEEEEEEESS
T ss_pred CCEEEEEEccCCcccCEeEEEEEEeC
Confidence 12245999999999999999999875
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-20 Score=135.32 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=108.6
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecceeeecCCceEEEeeC---CCCeEEEEEcccCCCCCEEEEEEecCCCce-
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR---EGDEWTLHIKWAQKRDAGVYECQLSTQPVR- 75 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~- 75 (212)
+.|.|.+.+. |.+.|.|+|++...............+|+....+. .....+|.|.+++.+|+|.|+|.+.+....
T Consensus 21 v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~ 100 (327)
T 2wng_A 21 AILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPD 100 (327)
T ss_dssp EEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTC
T ss_pred EEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEeecCCCcc
Confidence 3689999998 88999999976421110000000012366654321 145668999999999999999999885321
Q ss_pred -----eEEEEEEEecccc--eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEe--ecCc
Q psy13371 76 -----SFFVNLNVVVPTA--EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT--EKGE 146 (212)
Q Consensus 76 -----~~~~~l~v~~~~~--~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~ 146 (212)
...+.|.|..++. .+. .+...+.+|+.+.|.|.+.+.|.|...+.|++++..+.... ..... ..+.
T Consensus 101 ~~~~~~~~~~l~V~~~p~~p~i~-~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~----~~~~~~~~~~~ 175 (327)
T 2wng_A 101 TEFKSGAGTELSVRAKPSAPVVS-GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQ----TNVDPVGESVS 175 (327)
T ss_dssp EEEEECCCEEEEEEBCCCCCEEE-CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEE----EEEECSSCCSC
T ss_pred eeEeecCcEEEEEEecCCCceee-ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccc----cccccccCCCc
Confidence 2345777766442 333 33466889999999999998876645699999998773211 11111 1121
Q ss_pred -eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 147 -VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 147 -~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+.|.|.....+|.|.|+|.|.|.
T Consensus 176 ~~~~s~L~i~~~~~d~~g~Y~C~a~n~ 202 (327)
T 2wng_A 176 YSIHSTAKVVLTREDVHSQVICEVAHV 202 (327)
T ss_dssp EEEEEEEEEECCTTGGGCEEEEEEECT
T ss_pred eEEEEEEEEechhcCcCceEEEEEecc
Confidence 12345778766777789999999986
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-19 Score=126.63 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=103.5
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce----eeeec--c-eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH----ILTVG--S-YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~----~~~~~--~-~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+.+ .+.+.|+|..... +.... . ... ...+|+.+..+...++.+|+|.+++.+|+|.|.|.+
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 97 (232)
T 1dn0_B 18 LSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR 97 (232)
T ss_dssp EEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEE
Confidence 36999998875 6899999975311 11111 0 011 124799988665667889999999999999999999
Q ss_pred cC--C--C---ceeEEEEEEEecc----ccee-eCCCceeeeCC-CcEEEEeEEeeC-CCCCceEEEEE-cCeEEEeeCC
Q psy13371 70 ST--Q--P---VRSFFVNLNVVVP----TAEI-LGSPDLHVDEG-STINLTCSIKYS-PEPPAYIFWYH-HDEVISYDSS 134 (212)
Q Consensus 70 ~~--~--~---~~~~~~~l~v~~~----~~~~-~~~~~~~~~~g-~~~~l~C~~~~~-~~p~~~v~W~~-~~~~~~~~~~ 134 (212)
.+ . . .......|.|... |... ..+. ..+..| +.++|.|.+.+. |.| ..+.|++ ++..+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~~~~g~~~v~L~C~~~g~~P~p-~~v~W~~~~g~~l~~~~- 174 (232)
T 1dn0_B 98 PPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDS-ITFSWKYKNNSDISSTR- 174 (232)
T ss_dssp CSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSC-CEEEEEETTSCEECCEE-
T ss_pred ecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc-cccCCCCCcEEEEEEEEEEeCCC-eEEEEEcCCCCceeeEE-
Confidence 83 2 1 1223457777651 2122 1222 234567 899999999876 443 3699999 887763200
Q ss_pred CCceeEEeecCce-EEEEEEEeeeee--cCCEEEEEEcccCC
Q psy13371 135 RGGVSVITEKGEV-TTSYLLIQQAEL--KDSGKYSCSPSNAD 173 (212)
Q Consensus 135 ~~~~~~~~~~~~~-~~~~l~i~~~~~--~d~g~y~C~~~n~~ 173 (212)
.... .. ..+.. ..+.|.|..... +|.|.|+|.+.|..
T Consensus 175 ~~~~-~~-~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~ 214 (232)
T 1dn0_B 175 GFPS-VL-RGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPN 214 (232)
T ss_dssp ECCC-EE-ETTEEEEEEEEEECTTCC---CCCEEEEEEECTT
T ss_pred ECCc-cc-cCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCC
Confidence 0000 11 12222 235688877776 78999999999983
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.83 E-value=5.7e-19 Score=127.33 Aligned_cols=170 Identities=18% Similarity=0.265 Sum_probs=109.1
Q ss_pred CeeEeeeCCCC------CceEEEEeeCcce----eeeecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL------PTRVSWIRHRDIH----ILTVGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p------~~~v~W~~~~~~~----~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+.+ .+.+.|+|..... +...... ....++|+.+.. ..+..+|+|.+++.+|+|.|.|.+
T Consensus 23 v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~ 100 (264)
T 2gjj_A 23 VTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG--SGTDFTLTIGSVKAEDLAVYYCQQ 100 (264)
T ss_dssp EEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEE
T ss_pred EEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec--CCCEEEEEECCCCHHHCEEEEEEE
Confidence 46999999987 7899999964211 1111100 001246888763 346789999999999999999999
Q ss_pred cCCCc--eeEEEEEEEeccc-------------------ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--
Q psy13371 70 STQPV--RSFFVNLNVVVPT-------------------AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-- 126 (212)
Q Consensus 70 ~~~~~--~~~~~~l~v~~~~-------------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~-- 126 (212)
.+... ......|.|..++ ..+..++...+.+|+.++|.|.+.+.+.+...+.|+++.
T Consensus 101 ~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g 180 (264)
T 2gjj_A 101 YSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFINWVKKNSG 180 (264)
T ss_dssp CSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTT
T ss_pred ecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCC
Confidence 88531 2234567776542 123334445789999999999998765322459999873
Q ss_pred eE---EEe-eCCC---------CceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 127 EV---ISY-DSSR---------GGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 127 ~~---~~~-~~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.. +.. .... ..+.....+.......|.|.++..+|+|.|+|.+.|.
T Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 181 KSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp SCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 21 111 0100 1122222111112356999999999999999999984
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-19 Score=128.70 Aligned_cols=170 Identities=19% Similarity=0.269 Sum_probs=106.4
Q ss_pred CeeEeeeCCCC-----CceEEEEeeCcce----eeeeccee-eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLL-----PTRVSWIRHRDIH----ILTVGSYT-YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p-----~~~v~W~~~~~~~----~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+.+.+ .+.+.|+|..... +....... ...++|+.+.. ..+..+|+|.+++.+|+|.|.|.+.
T Consensus 33 v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~ 110 (268)
T 1x9q_A 33 ASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG--SGTDFTLKINRVEAEDLGVYFCSQS 110 (268)
T ss_dssp EEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc--CCCEEEEEECCCChhHCEEEEEEEe
Confidence 46999999987 5899999975311 11111100 01246888763 4467899999999999999999998
Q ss_pred CCCc--eeEEEEEEEecccc-----------------------eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc
Q psy13371 71 TQPV--RSFFVNLNVVVPTA-----------------------EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH 125 (212)
Q Consensus 71 ~~~~--~~~~~~l~v~~~~~-----------------------~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~ 125 (212)
+... ......|.|..++. .+..+....+.+|+.++|.|.+.+.+.....+.|+++
T Consensus 111 ~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~ 190 (268)
T 1x9q_A 111 THVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQ 190 (268)
T ss_dssp SSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGGCEEEEEEE
T ss_pred cCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCccccccEEEEEEe
Confidence 8531 22334566654211 2233445678999999999999876532345999985
Q ss_pred C--eEEE---ee------------CCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 126 D--EVIS---YD------------SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 126 ~--~~~~---~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
. ..+. .. .....+.....+.......|.|.+++.+|+|.|+|.+.+.
T Consensus 191 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 191 SPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp ETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred CCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 3 2221 10 0112233332222112356999999999999999999875
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=138.21 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=106.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCE-EEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.|.|.|.+.|++++........ + .....+..|.|.+++.+|+| .|+|.+.+. +..+..
T Consensus 176 v~L~C~~~g~p~p~i~W~~~~~~~~~~~~--------~-----~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~ 242 (347)
T 2ifg_A 176 VLLRCQVEGRGLEQAGWILTELEQSATVM--------K-----SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVS 242 (347)
T ss_dssp EEEEEEEECSSCCCCCEEESCCCSSEEEC--------C-----CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEE
T ss_pred EEEEEEEecCCCCEEEEEcCCceeecccc--------c-----ceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEE
Confidence 36899999999999999998742221110 0 12335678999999999999 999999886 344556
Q ss_pred EEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEee---cCceEEEEEEEe
Q psy13371 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE---KGEVTTSYLLIQ 155 (212)
Q Consensus 79 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~ 155 (212)
+.|.|..+|.. ......+|+.+.|.|.+.+.|.|. +.|++++..+.... ........ ........|.|.
T Consensus 243 ~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~--i~W~~~g~~l~~~~--~~~~~~~~~~~~~~~~~~~L~I~ 314 (347)
T 2ifg_A 243 VQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPS--LRWLFNGSVLNETS--FIFTEFLEPAANETVRHGCLRLN 314 (347)
T ss_dssp ECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCE--EEEEETTEECCCCS--SEEEEECCCCTTCCCEEEEEEES
T ss_pred EEEEEcCCCee----eeccCccCceEEEEEEeeecCCCc--EEEEeCCEECCCCc--ceeeEEEeecCCCcccceEEEEC
Confidence 66666655543 111245789999999999987776 99999998774211 10111111 112234569999
Q ss_pred eeeecCCEEEEEEcccCC
Q psy13371 156 QAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~~ 173 (212)
++..+|+|.|+|.|.|..
T Consensus 315 ~v~~~d~G~Y~C~a~N~~ 332 (347)
T 2ifg_A 315 QPTHVNNGNYTLLAANPF 332 (347)
T ss_dssp SCCGGGCEEEEEEEEETT
T ss_pred CCCcccCceEEEEEecCC
Confidence 999999999999999983
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=129.55 Aligned_cols=147 Identities=18% Similarity=0.116 Sum_probs=97.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeE--EEEEcccCCCCCEEEEEEecCCC---ce
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEW--TLHIKWAQKRDAGVYECQLSTQP---VR 75 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~---~~ 75 (212)
+.|.|.+.+ +.+.+.|+|++.. +.. .. + ... ...... .|.|.+++.+|+|.|+|.+.+.. ..
T Consensus 26 vtL~C~~~~-~~~~~~W~k~g~~-~~~-~~-------~-~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~ 92 (218)
T 1uct_A 26 VKIQCQAIR-EAYLTQLMIIKNS-TYR-EI-------G-RRL--KFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRY 92 (218)
T ss_dssp EEEEECCCT-TCSEEEEEEEETT-EEE-EC-------S-EEC--C----CCCEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred EEEEEEcCC-CCCEEEEEECCCc-ccc-cc-------c-ccC--CCCcceeeEEEEcccccccCEEEEEEEEcCCCceee
Confidence 469999987 6789999998742 211 10 0 000 111234 89999999999999999999852 23
Q ss_pred eEEEEEEEec--ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEE
Q psy13371 76 SFFVNLNVVV--PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 76 ~~~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (212)
+..+.|.|.. +++.+...++..+.+|+.++|.|...+.+.+ .+.|++++..+.. ... ..... ..|.
T Consensus 93 s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~--~~~W~k~g~~~~~-----~~~-~~~~~----~~L~ 160 (218)
T 1uct_A 93 SDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFD--RFSLAKEGELSLP-----QHQ-SGEHP----ANFS 160 (218)
T ss_dssp CCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCS--EEEEEETTCSSCC-----SEE-ECSSS----EEEE
T ss_pred cCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCC--EEEEEECCCcccc-----ccc-CCCcc----CEEE
Confidence 4456777765 2333332335578899999999966544433 5999999876521 111 11111 3599
Q ss_pred EeeeeecCCEEEEEEcccC
Q psy13371 154 IQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~ 172 (212)
|.+++.+|+|.|+|.|.|.
T Consensus 161 I~~v~~~D~G~Y~C~a~n~ 179 (218)
T 1uct_A 161 LGPVDLNVSGIYRCYGWYN 179 (218)
T ss_dssp CCSCCGGGCEEEEEEEECT
T ss_pred EccCCcccCEEEEEEEEcC
Confidence 9999999999999999874
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=133.65 Aligned_cols=151 Identities=15% Similarity=0.218 Sum_probs=107.6
Q ss_pred CeeEee-eCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRK-LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|. +.+.|.|.+.|+++....... ......++.+.+. ..|.|.++..+|+|.|+|.+.+. +..+..
T Consensus 153 ~~l~C~~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 223 (331)
T 3u83_A 153 LVATCTSANGKPPSVVSWETRLKGEAEY--QEIRNPNGTVTVI-------SRYRLVPSREAHQQSLACIVNYHMDRFKES 223 (331)
T ss_dssp EEEEEEEEEEBSCCEEEEEESSCCEEEE--EEEECTTSCEEEE-------EEEEECCCGGGTTCEEEEEEEETTEEEEEE
T ss_pred EEEEEEecCCcCCceEEEEcCCCCcccc--ceeECCCCcEEEE-------EEEEEEeccccCCCEEEEEEecCCCcceee
Confidence 368998 888999999999964322211 1111223444443 26899999999999999999986 345667
Q ss_pred EEEEEecccceee-CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe-e
Q psy13371 79 VNLNVVVPTAEIL-GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ-Q 156 (212)
Q Consensus 79 ~~l~v~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~ 156 (212)
+.|.|..+|.... .+....+.+|+.+.|.|.+.+.|.|. .+.|++++..+. .. .....+ .|.|. +
T Consensus 224 ~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~i~W~~~~~~~~----~~---~~~~~~-----~L~i~~~ 290 (331)
T 3u83_A 224 LTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPAT-EYHWTTLNGSLP----KG---VEAQNR-----TLFFKGP 290 (331)
T ss_dssp EECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCC-EEEEEETTBSCC----TT---EEEETT-----EEEECSC
T ss_pred EEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCC-EEEEEECCCccc----cc---ceecCc-----EEEEeCC
Confidence 7777777665443 34445688899999999999886553 489999987662 11 111222 49999 8
Q ss_pred eeecCCEEEEEEcccCC
Q psy13371 157 AELKDSGKYSCSPSNAD 173 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~~ 173 (212)
+..+|+|.|+|.|.|..
T Consensus 291 v~~~d~G~Y~C~a~N~~ 307 (331)
T 3u83_A 291 INYSLAGTYICEATNPI 307 (331)
T ss_dssp CCGGGCEEEEEEEEETT
T ss_pred CccccCeEEEEEEEecc
Confidence 99999999999999983
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-19 Score=130.92 Aligned_cols=156 Identities=19% Similarity=0.275 Sum_probs=103.5
Q ss_pred CeeEeee------CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec-CC-
Q psy13371 1 MLHQRKL------KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS-TQ- 72 (212)
Q Consensus 1 ~~l~C~~------~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~-~~- 72 (212)
+.|.|.+ .+.|.+.+.|+|++. .+.. . +.++... +..|.|.+++.+|+|.|+|.+. +.
T Consensus 121 v~l~C~~~~~~~~~g~p~~~i~W~k~~~-~l~~-~------~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~~n~~ 186 (315)
T 1itb_B 121 GGLVCPYMEFFKNENNELPKLQWYKDCK-PLLL-D------NIHFSGV------KDRLIVMNVAEKHRGNYTCHASYTYL 186 (315)
T ss_dssp EEEECSSCTTTCTTTTCCCCCEEEETTE-ECCC-C------SSSEEEE------TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred eEEEEecccccccCCCCCCEEEEEECCE-ECCC-c------cceEeec------CceEEEEeceehhCcEEEEEEEcCCC
Confidence 3689998 888999999999873 2221 1 1233222 2279999999999999999999 43
Q ss_pred Cce---eEEEEEEEec----ccceeeCCCc--eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCc-eeEEe
Q psy13371 73 PVR---SFFVNLNVVV----PTAEILGSPD--LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGG-VSVIT 142 (212)
Q Consensus 73 ~~~---~~~~~l~v~~----~~~~~~~~~~--~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~ 142 (212)
+.. ...+.+.+.. .++.+..+.. ..+.+|+.+.|.|.+.+.|.|. +.|++++..+........ .....
T Consensus 187 g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~--i~W~~~g~~i~~~~~~~~~~~~~~ 264 (315)
T 1itb_B 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDI--AYWKWNGSVIDEDDPVLGEDYYSV 264 (315)
T ss_dssp TEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSE--EEEEETTEECCTTCSSEEEEEEEE
T ss_pred CcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCe--eEEEECCEECCcccccccccceee
Confidence 322 2333443431 2233333333 4688999999999999987765 999999987743221100 01111
Q ss_pred ecC-----ceEEEEEEEeeeeecC-CEEEEEEcccC
Q psy13371 143 EKG-----EVTTSYLLIQQAELKD-SGKYSCSPSNA 172 (212)
Q Consensus 143 ~~~-----~~~~~~l~i~~~~~~d-~g~y~C~~~n~ 172 (212)
..+ ....+.|.|.++..+| +|.|+|.|.|.
T Consensus 265 ~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~ 300 (315)
T 1itb_B 265 ENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT 300 (315)
T ss_dssp CCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECT
T ss_pred eccCCCceeEEEEEEEEeecCHHHcCCceEEEEecC
Confidence 110 1233569999999999 99999999998
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=132.82 Aligned_cols=148 Identities=23% Similarity=0.343 Sum_probs=101.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-ce-eEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VR-SFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~-~~~ 78 (212)
+.|.|.+.+.|.+.+.|+|++. .+.... ...++... .+..|.|.+++.+|+|.|+|.+.+.. .. +..
T Consensus 126 v~l~C~~~g~p~~~v~W~k~~~-~~~~~~-----~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 194 (304)
T 2yd9_A 126 ATMLCAASGNPDPEITWFKDFL-PVDPSA-----SNGRIKQL-----RSGALQIESSEETDQGKYECVATNSAGVRYSSP 194 (304)
T ss_dssp EEECCEEECSSCCEEEEEETTE-ECCGGG-----GTTSEEEC-----TTSCEEECSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred EEEEEECccCCCCeEEEEECCE-ECcCCC-----CcceEEeC-----CCeEEEEccCCcccCEEEEEEEEeCCCCEEecc
Confidence 3689999999999999999773 222111 01233322 22389999999999999999999863 22 112
Q ss_pred EEEEEe---cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe
Q psy13371 79 VNLNVV---VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 79 ~~l~v~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
..+.|. .+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+...... ..+ ...|.+.
T Consensus 195 ~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~--v~W~~~~~~l~~~~~~-------~~~---~~~L~i~ 262 (304)
T 2yd9_A 195 ANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPY--VKWMQGAEDLTPEDDM-------PVG---RNVLELT 262 (304)
T ss_dssp EEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCE--EEEEETTEECSCSSSC-------CBS---EEEEEEC
T ss_pred EEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCE--EEEEECCEECCCcccc-------cCC---cEEEEEc
Confidence 445553 244444556667789999999999999887776 9999999877422111 011 1236665
Q ss_pred eeeecCCEEEEEEcccCC
Q psy13371 156 QAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~~ 173 (212)
++ +|+|.|+|.|.|..
T Consensus 263 ~~--~d~G~Y~C~a~N~~ 278 (304)
T 2yd9_A 263 DV--KDSANYTCVAMSSL 278 (304)
T ss_dssp SC--CSCEEEEEEEEETT
T ss_pred cc--ccCEEEEEEEEeCC
Confidence 54 69999999999983
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=121.52 Aligned_cols=136 Identities=20% Similarity=0.296 Sum_probs=100.0
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEE
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 79 (212)
+.|.|.+.+.| .+.+.|+|++. .+.. ....+.+.+++.+|+|.|+|.+.+.. .+..+
T Consensus 22 v~l~C~~~~~p~~~~~~W~~~g~--~~~~-------------------~~~~~~~~~~~~~d~G~Y~C~~~~~~-~s~~~ 79 (170)
T 3ry4_A 22 VTLTCQGARSPESDSIQWFHNGN--LIPT-------------------HTQPSYRFKANNNDSGEYTCQTGQTS-LSDPV 79 (170)
T ss_dssp EEEEEESCCCSSSSCEEEEETTE--ECTT-------------------CCSSEEEEECCGGGCEEEEEEETTSB-CCCCE
T ss_pred EEEEEEecCCCCcceEEEEECCe--Eccc-------------------CccceEEEecccccCeEEEEEEeCCC-ceEeE
Confidence 36899999987 68999999773 2211 11145567899999999999999742 44567
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..++.... ++...+.+|+.+.|.|.+.+.+ |...+.|++++..+...... ..|.|.++..
T Consensus 80 ~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~g~~~~~~~~~--------------~~L~i~~v~~ 143 (170)
T 3ry4_A 80 HLTVLFEWLVLQ-TPHLEFQEGETIMLRCHSWKDK-PLVKVTFFQNGKSQKFSHLD--------------PTFSIPQANH 143 (170)
T ss_dssp EEEEECCSEEEE-CSCSEECTTCCEEEEEEEGGGC-CEEEEEEEETTEEEEEESSC--------------CEEEESSCCG
T ss_pred EEEEECCceEec-CCCceeecCCeEEEEEECCCCC-CCceEEEEECCeEccccCCC--------------CeEEEEeccc
Confidence 777777654433 3456788999999999996543 33459999999877432211 2399999999
Q ss_pred cCCEEEEEEcccCCe
Q psy13371 160 KDSGKYSCSPSNADV 174 (212)
Q Consensus 160 ~d~g~y~C~~~n~~~ 174 (212)
+|+|.|+|.+.|..+
T Consensus 144 ~d~G~Y~C~a~n~~g 158 (170)
T 3ry4_A 144 SHSGDYHCTGNIGYT 158 (170)
T ss_dssp GGCEEEEEEEEETTE
T ss_pred cCCEEEEEEEEeCcC
Confidence 999999999999743
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-19 Score=124.21 Aligned_cols=140 Identities=21% Similarity=0.389 Sum_probs=91.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+ |.+.+.|+|++. .+... ...+.+|.|.+++.+|+|.|+|.+.+.... .+.
T Consensus 21 v~L~C~~---p~~~i~W~k~g~--~l~~~----------------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~--~~~ 77 (204)
T 1sy6_A 21 VLLTCDA---EAKNITWFKDGK--MIGFL----------------TEDKKKWNLGSNAKDPRGMYQCKGSQNKSK--PLQ 77 (204)
T ss_dssp EEEEECS---CSSEEEEEETTE--EEEEE----------------ESSCCCEEEEEGGGCCEEEEEEESSSSCCC--CEE
T ss_pred EEEEEcC---CCCEEEEEECCE--ECCCC----------------CCCCCeEEeCCCCcCCCEEEEEEecCCCCe--eEE
Confidence 3689999 789999999773 22211 012347899999999999999997654322 233
Q ss_pred EEEec------------------------------ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEE
Q psy13371 81 LNVVV------------------------------PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130 (212)
Q Consensus 81 l~v~~------------------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~ 130 (212)
+.+.. .++.+...+.....+|+.+.|.|. +.|.|. +.|++++..+.
T Consensus 78 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p~p~--i~W~k~~~~l~ 153 (204)
T 1sy6_A 78 VYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGSE--ILWQHNDKNIG 153 (204)
T ss_dssp EEEEC------------------------------------CCCCEEEEETTEEEEECS--CCCSSC--EEEEETTEEES
T ss_pred EEEEEeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC--CCCCCc--eEEEECCEECC
Confidence 44330 011222222222338999999999 566666 99999998874
Q ss_pred eeCCCCceeEEeecCceEEEEEEEeee-eecCCEEEEEEcccCCe
Q psy13371 131 YDSSRGGVSVITEKGEVTTSYLLIQQA-ELKDSGKYSCSPSNADV 174 (212)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~n~~~ 174 (212)
..... .......+ .|.|.++ ..+|+|.|+|.|.|..+
T Consensus 154 ~~~~~--~~~~~~~~-----~L~I~~v~~~~D~G~Y~C~A~N~~g 191 (204)
T 1sy6_A 154 GDEDD--KNIGSDED-----HLSLKEFSELEQSGYYVCYPRGSKP 191 (204)
T ss_dssp CCTTC--TTEEEETT-----EEEETTCCHHHHCEEEEEEETTSCG
T ss_pred CccCC--ceEecCCC-----EEEEeeCCccccCEEEEEEeccCCC
Confidence 32111 11222232 4999999 99999999999999843
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-21 Score=137.49 Aligned_cols=170 Identities=12% Similarity=0.122 Sum_probs=94.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceee---eec--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc-
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHIL---TVG--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV- 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~---~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~- 74 (212)
+.|.|.+.+.|.+.+.|+|++..... ... .......+|+.... ..++.+|+|.+++.+|+|.|.|.+.+...
T Consensus 41 v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 118 (233)
T 3bqu_C 41 VTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG--YGTDFVFTIENMLSEDVADYYCLQSDNLPY 118 (233)
T ss_dssp CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE--EEEEEEEC-----CCCCSEEEEEECSSSSC
T ss_pred EEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec--cCCEEEEEECCCCHHHCEEEEEEEecCCce
Confidence 47999999988889999987532111 000 00001134555432 22455899999999999999999987531
Q ss_pred -eeEEEEEEEec---ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEE
Q psy13371 75 -RSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTT 149 (212)
Q Consensus 75 -~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 149 (212)
......|.|.. +|.....++......|+.++|.|.+.+.+++...+.|++++..+..............++. ...
T Consensus 119 ~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (233)
T 3bqu_C 119 TFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS 198 (233)
T ss_dssp CBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEE
T ss_pred eecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEE
Confidence 12223455543 2333332333334468999999999986544346999999987632100000000011121 234
Q ss_pred EEEEEeeeeecCCEEEEEEcccC
Q psy13371 150 SYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 150 ~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.|.|.....+|.|.|+|.|.|+
T Consensus 199 s~L~i~~~~~~d~g~Y~C~a~n~ 221 (233)
T 3bqu_C 199 STLTLTKDEYERHNSYTCEATHK 221 (233)
T ss_dssp EEEEEEHHHHHTCCCEEEEEEEC
T ss_pred EEEEECHHHhCCCCCEEEEEEeC
Confidence 56889888889999999999987
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=129.64 Aligned_cols=175 Identities=14% Similarity=0.211 Sum_probs=110.0
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce-ee---eec---c-eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH-IL---TVG---S-YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~-~~---~~~---~-~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.|.|+|..... .. ... . ..+ ..++|+.+..+...++.+|+|.+++.+|+|.|.|.
T Consensus 24 v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 103 (261)
T 2xqy_G 24 VKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCG 103 (261)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCcccCeEEEEE
Confidence 46999999876 6899999975311 11 100 0 011 12479998865556788999999999999999999
Q ss_pred ecCCC--c--eeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCcee
Q psy13371 69 LSTQP--V--RSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVS 139 (212)
Q Consensus 69 ~~~~~--~--~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~ 139 (212)
+.+.. . ....+.|.|.. +|.....++...+..|+.++|.|.+.+. |.| ..+.|++++..+..... . .
T Consensus 104 ~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~-i~v~W~k~g~~~~~~~~-~-~- 179 (261)
T 2xqy_G 104 RLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEP-VTLTWNSGSLSSGVHTF-P-A- 179 (261)
T ss_dssp EECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSC-CEEEEGGGTCCTTEEEC-C-C-
T ss_pred EecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCC-CEEEEecCCCcCceEec-C-c-
Confidence 98852 1 12345677764 2222222222346679999999999875 433 36999998865421111 1 1
Q ss_pred EEeecCce-EEEEEEEeeeeecCCEEEEEEcccC-CeeEEEEEE
Q psy13371 140 VITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA-DVASVYVHV 181 (212)
Q Consensus 140 ~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~-~~~~~~~~v 181 (212)
... .+.. ..+.|.|.+...+| |.|+|.+.|. ....+...+
T Consensus 180 ~~~-~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~~~ 221 (261)
T 2xqy_G 180 VLQ-SDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI 221 (261)
T ss_dssp EEE-TTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred eec-CCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEEEe
Confidence 111 1221 23568888777777 9999999997 334444433
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-19 Score=129.51 Aligned_cols=171 Identities=15% Similarity=0.167 Sum_probs=110.1
Q ss_pred CeeEeeeCCC--CCceEEEEeeCccee----eeec------ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHI----LTVG------SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~----~~~~------~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+. +.+.+.|+|...... .... .......+|+.+..+...+..+|+|.+++.+|+|.|+|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 97 (280)
T 3fku_X 18 VKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCA 97 (280)
T ss_dssp EEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCSTTCEECCEE
T ss_pred EEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEE
Confidence 4699999986 668999998643111 1111 001112468998866677788999999999999999999
Q ss_pred ecCC--------C--ceeEEEEEEEec--------------ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEE
Q psy13371 69 LSTQ--------P--VRSFFVNLNVVV--------------PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH 124 (212)
Q Consensus 69 ~~~~--------~--~~~~~~~l~v~~--------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~ 124 (212)
+.+. . .......|.|.. +++.+..++...+.+|+.++|.|.+.+.+.+...+.|++
T Consensus 98 ~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r 177 (280)
T 3fku_X 98 RSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNSNNVGNQGAAWLQ 177 (280)
T ss_dssp ECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEEECCCCCCCTTCCEEEE
T ss_pred EecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEEEecCCCCCCceEEEEE
Confidence 9875 1 122344566655 123333344478999999999999987322223499997
Q ss_pred cC--eEEEe---eC-----CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 125 HD--EVISY---DS-----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 125 ~~--~~~~~---~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.. ..+.. .. ....+......+. ...|.|.+++.+|+|.|.|.+.+..
T Consensus 178 ~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~--~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 178 QHQGHPPKLLSYRNNDRPSGISERFSASRSGN--TASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp ECSSSCCEESCCTTCCCCSSSCTTEEEEEETT--EEEEEECSCCGGGCSEEEEEEEETT
T ss_pred ECCCCCCEEEEEeccccCCCCCCCEEEEccCC--EEEEEECCCCHHHCEEEEEEEecCC
Confidence 43 22211 00 0012222222222 2469999999999999999998754
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=126.01 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=104.7
Q ss_pred CeeEeeeCCCCC-ceEEEEeeCcce---eeeeccee-eecCCceE----------EEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGLLP-TRVSWIRHRDIH---ILTVGSYT-YTSDQRFS----------AIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~p~-~~v~W~~~~~~~---~~~~~~~~-~~~~~r~~----------~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.+.+.+. +.+.|+|++... .+...... .....|+. +. .+..|.|.+++.+|+|.|
T Consensus 18 v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y 92 (231)
T 2pet_A 18 VILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLD-----SQGRLVLAEAQVGDERDY 92 (231)
T ss_dssp EEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEEC-----TTCCEEESSCCGGGCEEE
T ss_pred EEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccC-----CCceEEEcccCcccCceE
Confidence 368999999995 999999876421 11100000 00011222 22 223499999999999999
Q ss_pred EEEecCC--CceeEEEEEEEecccc---eeeCCCceeeeCCCcE-EEEeEE-eeCCCCCceEEEEEcCeEEEeeCCCCce
Q psy13371 66 ECQLSTQ--PVRSFFVNLNVVVPTA---EILGSPDLHVDEGSTI-NLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGV 138 (212)
Q Consensus 66 ~C~~~~~--~~~~~~~~l~v~~~~~---~~~~~~~~~~~~g~~~-~l~C~~-~~~~~p~~~v~W~~~~~~~~~~~~~~~~ 138 (212)
+|.+.+. +..+..+.|.|..++. ....+....+.+|+.+ .|.|.+ .+.|.|. +.|++++..+.........
T Consensus 93 ~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~--i~W~~~~~~~~~~~~~~~~ 170 (231)
T 2pet_A 93 VCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPK--ITWYRNGQRLEVPVEMNPE 170 (231)
T ss_dssp EEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCE--EEEEETTEECCCCSSCCSS
T ss_pred EEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCE--EEEEECCccCccccccccc
Confidence 9999875 4556677788876542 2233444556788888 999999 7776665 9999999887543311111
Q ss_pred eEEe------ecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 139 SVIT------EKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 139 ~~~~------~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.... ..+.. ..+.|.|.....+|.|.|+|.|.|.
T Consensus 171 ~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 171 GYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred eeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 1111 11211 1245888755666799999999984
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=127.47 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=104.0
Q ss_pred CeeEeeeCCCCC----ceEEEEeeCccee----eeec--c-eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEE
Q psy13371 1 MLHQRKLKGLLP----TRVSWIRHRDIHI----LTVG--S-YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67 (212)
Q Consensus 1 ~~l~C~~~~~p~----~~v~W~~~~~~~~----~~~~--~-~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 67 (212)
+.|.|.+.+.|. +.+.|+|...... .... . ... ...+|+.+..+...++.+|+|.+++.+|+|.|.|
T Consensus 18 v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 97 (228)
T 3bae_H 18 LSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDTADTATYYC 97 (228)
T ss_dssp EEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred EEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCcccCEEEEE
Confidence 369999999875 8999998652111 1110 0 011 1246888876555577899999999999999999
Q ss_pred EecCCCc----------eeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEee
Q psy13371 68 QLSTQPV----------RSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYD 132 (212)
Q Consensus 68 ~~~~~~~----------~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~ 132 (212)
.+.+... ....+.|.|.. +|.....++...+.+|+.+.|.|.+.+. |.| ..+.|++++..+...
T Consensus 98 ~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p-~~v~W~~~~~~~~~~ 176 (228)
T 3bae_H 98 ARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEP-VTLTWNSGSLSSGVH 176 (228)
T ss_dssp EEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSC-CEEEEGGGTCCTTEE
T ss_pred EEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCC-EEEEEeeCCcccCce
Confidence 9987431 11235777763 2222222333346789999999999876 444 369999887642100
Q ss_pred CCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 133 SSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 133 ~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
...... ..+. ...+.|.|.+...++ |.|+|.|.|..
T Consensus 177 ---~~~~~~-~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~ 213 (228)
T 3bae_H 177 ---TFPAVL-QSDLYTLSSSVTVTSSTWPS-ESITCNVAHPA 213 (228)
T ss_dssp ---EEEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGG
T ss_pred ---EcCcee-CCCcEEEEEEEEEEhhhcCC-CcEEEEEEECC
Confidence 000111 1121 123568887777756 99999999983
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=128.70 Aligned_cols=158 Identities=20% Similarity=0.268 Sum_probs=104.7
Q ss_pred CeeEeeeCCC-------CCceEEEEeeCcce----eeeecc----eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGL-------LPTRVSWIRHRDIH----ILTVGS----YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~-------p~~~v~W~~~~~~~----~~~~~~----~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.+.+. +.+.+.|+|++... +..... ......+|+.+..+...++.+|+|.+++.+|+|.|
T Consensus 18 v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y 97 (214)
T 2zg1_A 18 VLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSY 97 (214)
T ss_dssp EEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCCHhhCceE
Confidence 4689999865 57899999976421 111110 00112468887654445677899999999999999
Q ss_pred EEEecCCC-ce----eEEEEEEEeccc--ceeeCCCceeeeCCCcEEEEeEEeeC-C-CCCceEEEEEcCeEEEeeCCCC
Q psy13371 66 ECQLSTQP-VR----SFFVNLNVVVPT--AEILGSPDLHVDEGSTINLTCSIKYS-P-EPPAYIFWYHHDEVISYDSSRG 136 (212)
Q Consensus 66 ~C~~~~~~-~~----~~~~~l~v~~~~--~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~p~~~v~W~~~~~~~~~~~~~~ 136 (212)
.|.+.+.. .. ...+.|.|..++ +.+..+. .+.+|+.++|.|.+.+. + .|.+.+.|++++.... .
T Consensus 98 ~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~----~- 170 (214)
T 2zg1_A 98 FFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPL----D- 170 (214)
T ss_dssp EEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSS----C-
T ss_pred EEEEEcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccC----C-
Confidence 99998753 11 235677777643 2232222 36789999999999764 1 1444599999885431 0
Q ss_pred ceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 137 GVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 137 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
... .. .+.|.|..+..+|.|.|+|.|.|.
T Consensus 171 ~~~--~~-----~~~L~i~~~~~~~~g~Y~C~a~n~ 199 (214)
T 2zg1_A 171 PET--TR-----SSELTLTPRPEDHGTNLTCQMKRQ 199 (214)
T ss_dssp SSC--CC-----SSEEEECCCTTCCSCEEEEEEECC
T ss_pred CCc--ee-----EEEEEEecccHHcCcEEEEEEEeC
Confidence 000 11 134899999889999999999996
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=124.25 Aligned_cols=137 Identities=16% Similarity=0.183 Sum_probs=96.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC---ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP---VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~ 77 (212)
+.|.|.+.+ +.+.+.|+|++.. .. .....|.|.+++.+|+|.|+|.+.+.. ..+.
T Consensus 25 v~L~C~~~~-~~~~~~W~k~g~~--~~-------------------~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~ 82 (184)
T 2gi7_A 25 VTLRCQGPP-GVDLYRLEKLSSS--RY-------------------QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSD 82 (184)
T ss_dssp EEEEEECST-TCSEEEEEETTTC--CE-------------------ESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCC
T ss_pred EEEEEeCCC-CCCEEEEEECCcc--cc-------------------CcccEEEECcCChhhCceEEEEEEcCCCccCCCC
Confidence 469999988 7889999998742 00 023489999999999999999998853 2344
Q ss_pred EEEEEEecc--cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe
Q psy13371 78 FVNLNVVVP--TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 78 ~~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.+.|.|... ++.+...+...+.+|+.++|.|.+.+.+ + .+.|++++..+... . ..... ...|.|.
T Consensus 83 ~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~-~--~~~w~k~g~~~~~~----~-~~~~~-----~~~L~i~ 149 (184)
T 2gi7_A 83 QLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGF-D--QFALYKEGDPAPYK----N-PERWY-----RASFPII 149 (184)
T ss_dssp CEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCC-C--EEEEEECCCCTTSC----C-CCEEE-----EESSSEE
T ss_pred CEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCC-c--EEEEEECCCcCcce----e-cCCCc-----eEEEEEc
Confidence 566777542 2222222245678999999999976442 3 59999998765321 0 01111 1348999
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
++..+|+|.|+|.|.|.
T Consensus 150 ~v~~~D~G~Y~C~a~n~ 166 (184)
T 2gi7_A 150 TVTAAHSGTYRCYSFSS 166 (184)
T ss_dssp EETTCCSEEEEEEEECT
T ss_pred cCCccCCeEEEEEEEeC
Confidence 99999999999999986
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-19 Score=126.18 Aligned_cols=167 Identities=17% Similarity=0.201 Sum_probs=106.7
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcce----eeeecc---eeee---cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIH----ILTVGS---YTYT---SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~----~~~~~~---~~~~---~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+. +.+.+.|+|..... +..... ..+. .++|+.+..+...++.+|+|.+++.+|+|.|.|.
T Consensus 19 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 98 (242)
T 1hxm_B 19 ARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCA 98 (242)
T ss_dssp EEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCcccCEEEEEe
Confidence 3699999986 67899999965311 111110 0111 3579998865555788999999999999999999
Q ss_pred ecCCC--c------eeEEEEEEEecc-------c-ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-EEEe
Q psy13371 69 LSTQP--V------RSFFVNLNVVVP-------T-AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-VISY 131 (212)
Q Consensus 69 ~~~~~--~------~~~~~~l~v~~~-------~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-~~~~ 131 (212)
+.+.. . ......|.|... | +.+..+....+..|+.+.|.|.+.+.++..+.+.|++++. .+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~ 178 (242)
T 1hxm_B 99 LWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILG 178 (242)
T ss_dssp EEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCC
T ss_pred eecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecC
Confidence 98742 1 122456777652 2 2223344345667999999999987632235699999986 4421
Q ss_pred eCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 132 DSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 132 ~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
... . ... ..++. ...+.|.|.+... + |.|+|.+.|.
T Consensus 179 ~~~-~-~~~-~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~ 215 (242)
T 1hxm_B 179 SQE-G-NTM-KTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHE 215 (242)
T ss_dssp CEE-C-CCE-ECSSSEEEEEEEEECTGGG-G-SCEEEEEEET
T ss_pred ccc-c-cee-cCCCcEEEEEEEEEccccC-C-CEEEEEEEeC
Confidence 100 0 111 12222 2335688876654 4 9999999997
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=129.83 Aligned_cols=176 Identities=18% Similarity=0.260 Sum_probs=98.5
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee----eec---c-eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL----TVG---S-YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~----~~~---~-~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|....... ... . ..+ ...+|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 97 (257)
T 3bn9_D 18 LRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCA 97 (257)
T ss_dssp EEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGGGCEEEEEE
T ss_pred EEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChhhCEEEEEE
Confidence 46999999876 689999997632111 110 0 111 12479998876556788999999999999999999
Q ss_pred ecCCCc--------------eeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEE
Q psy13371 69 LSTQPV--------------RSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVI 129 (212)
Q Consensus 69 ~~~~~~--------------~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~ 129 (212)
+.+... ......|.|.. +|.....++...+..|+.++|.|.+.+. |.| ..+.|++++..+
T Consensus 98 ~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~p-i~v~W~k~g~~~ 176 (257)
T 3bn9_D 98 RPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP-VTVSWNSGALTS 176 (257)
T ss_dssp EECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSC-CEEEETTTTCCS
T ss_pred EecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCC-cEEEEeeCCCcC
Confidence 987531 11234677764 2222222223345679999999999876 443 369999988753
Q ss_pred EeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC-CeeEEEEEE
Q psy13371 130 SYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA-DVASVYVHV 181 (212)
Q Consensus 130 ~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~-~~~~~~~~v 181 (212)
.... . ......++. ...+.|.|.+...+| |.|+|.+.|. ....+...+
T Consensus 177 ~~~~-~--~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~i 226 (257)
T 3bn9_D 177 GVHT-F--PAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 226 (257)
T ss_dssp SCEE-C--CCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEEEE
T ss_pred CcEe-c--CCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEEE
Confidence 1110 0 011122232 233568888777777 9999999997 334444444
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=129.63 Aligned_cols=170 Identities=19% Similarity=0.214 Sum_probs=99.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeec---ceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVG---SYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~---~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+.+.+.+.+.|+|..... +.... ...... .+|+....+...+..+|+|.+++.+|+|.|.|.+.
T Consensus 20 v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 99 (259)
T 3omz_A 20 AEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYCATW 99 (259)
T ss_dssp EEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCcccCEEEEEEEe
Confidence 469999999999999999954211 11111 000000 12444333345567789999999999999999998
Q ss_pred CCC----ceeEEEEEEEecc-----------------cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe--
Q psy13371 71 TQP----VRSFFVNLNVVVP-----------------TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-- 127 (212)
Q Consensus 71 ~~~----~~~~~~~l~v~~~-----------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-- 127 (212)
+.. .......|.|..+ +.....+....+.+|+.++|.|.+.+.. +...+.|+++..
T Consensus 100 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~-~~~~v~W~k~~~~~ 178 (259)
T 3omz_A 100 DQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSW-WSYYIFWYKRLPSK 178 (259)
T ss_dssp CTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCC-SSCEEEEEEECTTC
T ss_pred eCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCcc-CCceEEEeeeCCCC
Confidence 752 2233456677653 2334456668899999999999887642 334599998542
Q ss_pred EEE---eeCC-----CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 128 VIS---YDSS-----RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 128 ~~~---~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
... .... ...+.....+.......|.|.+++.+|+|.|.|.+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 179 EMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp CEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred CcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 111 1000 0111222211111123599999999999999999974
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=121.52 Aligned_cols=146 Identities=13% Similarity=0.110 Sum_probs=98.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC---ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP---VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~ 77 (212)
+.|.|.+.+. .+.+.|+|++. ...... . +. .....+..|.|.+++.+|+|.|+|.+.+.. ..+.
T Consensus 21 v~L~C~~~~~-~~~~~w~k~g~--~~~~~~-----~-~~----~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~ 87 (188)
T 1oll_A 21 VTICCQGNYG-AVEYQLHFEGS--LFAVDR-----P-KP----PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSN 87 (188)
T ss_dssp EEEEEECCTT-CCEEEEEETTE--EEEEEC-----C-SS----CTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCC
T ss_pred EEEEEecCCC-CCEEEEEECCC--cccccc-----c-cc----CCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCC
Confidence 4699999764 47899999873 221100 0 00 023356789999999999999999997642 2345
Q ss_pred EEEEEEec--ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe
Q psy13371 78 FVNLNVVV--PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 78 ~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.+.|.|.. +++.+...+...+.+|+.++|.|.+.+. .+ .+.|++++..+... . . ... ....|.|.
T Consensus 88 ~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~-~~--~~~w~k~g~~~~~~-----~--~-~~~--~~~~L~I~ 154 (188)
T 1oll_A 88 LLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA-TS--MFLLLKEGRSSHVQ-----R--G-YGK--VQAEFPLG 154 (188)
T ss_dssp CEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSSS-CS--EEEEEEESSSCEEE-----E--E-ECS--SEEEEEEE
T ss_pred ceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCCC-CC--EEEEEECCcccccc-----c--c-CCC--ceeEEEEC
Confidence 56777764 2233333234568899999999998643 23 59999998765321 0 0 111 11359999
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
+++.+|+|.|+|.|.|.
T Consensus 155 ~v~~~d~G~Y~C~a~n~ 171 (188)
T 1oll_A 155 PVTTAHRGTYRCFGSYN 171 (188)
T ss_dssp ECCGGGCEEEEEECEEE
T ss_pred CCCcCCCcEEEEEEEcC
Confidence 99999999999999875
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-21 Score=134.26 Aligned_cols=170 Identities=15% Similarity=0.148 Sum_probs=105.0
Q ss_pred CeeEeeeCCCC-Cc-eEEEEeeCcceee---eec--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGLL-PT-RVSWIRHRDIHIL---TVG--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~p-~~-~v~W~~~~~~~~~---~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.+.+ .+ .+.|+|++..... ... .......+|+.... ..++.+|+|.+++.+|+|.|+|.+.+..
T Consensus 37 v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 114 (234)
T 2j6e_L 37 VTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK--SGTSASLAISGLRSEDEADYYCATWDDS 114 (234)
T ss_dssp EEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE--ETTEEEEEEESCCSTTCSEEEEEEEETT
T ss_pred EEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe--cCCeEEEEECCCCHHHCEEEEEEEEcCC
Confidence 46999999864 34 7999997531111 100 00001236777763 4567799999999999999999998863
Q ss_pred c----eeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC
Q psy13371 74 V----RSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145 (212)
Q Consensus 74 ~----~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 145 (212)
. ......|.|.. +|.....++......|+.++|.|.+.+.+++...+.|++++..+...... .......++
T Consensus 115 ~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~-~~~~~~~~~ 193 (234)
T 2j6e_L 115 LSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVET-TKPSKQSNN 193 (234)
T ss_dssp TTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEE-CCCCCCTTS
T ss_pred cceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccc-cCceECCCC
Confidence 2 12234455532 22222222222334688999999998865444579999999876321000 000011111
Q ss_pred c-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 146 E-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 146 ~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
. ...+.|.|.+...+|.|.|+|.|.|+.
T Consensus 194 ~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 222 (234)
T 2j6e_L 194 KYAASSYLSLTPEQWKSHRSYSCQVTHEG 222 (234)
T ss_dssp CCBCCEEECCCGGGTTTSCCEEEEEEBTT
T ss_pred CEEEEEEEEECHHHcCCCCeEEEEEEeCC
Confidence 1 223568898888999999999999983
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-19 Score=125.47 Aligned_cols=170 Identities=12% Similarity=0.102 Sum_probs=107.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceee----ee-cceee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC-
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHIL----TV-GSYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST- 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~----~~-~~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~- 71 (212)
+.|.|.+.+ +.+.|.|+|....... .. +.... ...+|+.+..+ ..++++|+|.+++.+|+|.|.|.+.+
T Consensus 20 v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 97 (240)
T 3q5y_A 20 SVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSALELEDSAMYFCASSLR 97 (240)
T ss_dssp EEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC-TTSCEEEEECSCCGGGCEEEEEEEESS
T ss_pred EEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC-CCCEEEEEECcCChhHCEEEEEEEccC
Confidence 469999976 7789999995431111 10 11111 11368888753 55688999999999999999999973
Q ss_pred -C--CceeEEEEEEEec------ccce-eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEE
Q psy13371 72 -Q--PVRSFFVNLNVVV------PTAE-ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141 (212)
Q Consensus 72 -~--~~~~~~~~l~v~~------~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~ 141 (212)
. ........|.|.. +|.. +..+....+.+|+.++|.|.+.+.+++...+.|++++..+............
T Consensus 98 ~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~ 177 (240)
T 3q5y_A 98 WGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYK 177 (240)
T ss_dssp TTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEE
T ss_pred CCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceee
Confidence 2 1223344566653 2222 2334444566789999999998854344468999999887321110001122
Q ss_pred eecCce-EEEEEEEeeeeecC-CEEEEEEcccC
Q psy13371 142 TEKGEV-TTSYLLIQQAELKD-SGKYSCSPSNA 172 (212)
Q Consensus 142 ~~~~~~-~~~~l~i~~~~~~d-~g~y~C~~~n~ 172 (212)
..++.. ..+.|.|.....+| .|.|+|.+.|+
T Consensus 178 ~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~ 210 (240)
T 3q5y_A 178 ESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFH 210 (240)
T ss_dssp EETTEEEEEEEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred CCCCCEEEEEEEEECHHHhccCCCEEEEEEEcC
Confidence 223322 23458888888888 67999999986
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-20 Score=137.50 Aligned_cols=170 Identities=19% Similarity=0.381 Sum_probs=110.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.+.+.|+|++. . +... .++... .......+|.|.+++.+|+|.|+|.+.+. +.....+
T Consensus 141 v~l~C~~~g~p~~~v~W~~~~~-~-~~~~-------~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 210 (334)
T 1ry7_B 141 VRFRCPAAGNPTPSISWLKNGR-E-FRGE-------HRIGGI-KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTY 210 (334)
T ss_dssp EEEECCCCCSSCCEEECCBTTB-C-CCTT-------SSTTCC-CCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEE
T ss_pred EEEEEEccCCCCCeEEEEECCE-E-Cccc-------ccccce-ecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEE
Confidence 3689999999999999999773 2 2111 111000 01234558999999999999999999986 3455666
Q ss_pred EEEEeccc---ceee--CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEE----cCeEEEeeCCCCceeEEeecCc----
Q psy13371 80 NLNVVVPT---AEIL--GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH----HDEVISYDSSRGGVSVITEKGE---- 146 (212)
Q Consensus 80 ~l~v~~~~---~~~~--~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~----~~~~~~~~~~~~~~~~~~~~~~---- 146 (212)
.|.|...+ +.+. .+....+..|+.+.|.|.+.+.|.|. +.|++ ++..+....... .......+.
T Consensus 211 ~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~--v~W~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~ 287 (334)
T 1ry7_B 211 TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH--IQWLKHVEVNGSKVGPDGTPY-VTVLKTAGANTTD 287 (334)
T ss_dssp EEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEE--EEEEECCCGGGCSBCTTSSBC-CCCCCCSSCSCSC
T ss_pred EEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCe--EEEEECCcCCCccccCCCCee-EEEeecCcccccc
Confidence 77776532 1221 24567789999999999998876665 99999 565553221100 000000000
Q ss_pred eEEEEEEEeeeeecCCEEEEEEcccC---CeeEEEEEEee
Q psy13371 147 VTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVLN 183 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g~y~C~~~n~---~~~~~~~~v~~ 183 (212)
...+.|.|.++..+|+|.|+|.|.|. ...++.+.|..
T Consensus 288 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 327 (334)
T 1ry7_B 288 KELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLP 327 (334)
T ss_dssp TTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEEC
T ss_pred ccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEE
Confidence 00124999999999999999999998 33444555543
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=134.61 Aligned_cols=169 Identities=15% Similarity=0.174 Sum_probs=108.9
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeeec-------cee-e--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTVG-------SYT-Y--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~-------~~~-~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+. +.+.|.|+|+........- ... . ..++|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 97 (344)
T 1za6_B 18 VKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSEDTAVYFCT 97 (344)
T ss_dssp EEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEE
Confidence 3699999987 4689999997421111100 000 0 12478888865556788999999999999999999
Q ss_pred ecCCC-ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEee
Q psy13371 69 LSTQP-VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143 (212)
Q Consensus 69 ~~~~~-~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 143 (212)
+.+.. .......|.|.. +|.....++...+.+|+.++|.|.+.+.++....+.|++++..+...... .....
T Consensus 98 ~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~---~~~~~ 174 (344)
T 1za6_B 98 RSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP---AVLQS 174 (344)
T ss_dssp ETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECC---CEECT
T ss_pred EecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECC---CeECC
Confidence 99852 233445677763 22222223334467899999999998863222349999988653111000 01111
Q ss_pred cCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 144 KGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 144 ~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
++. ...+.|.|.++..+| |.|+|.|.|..
T Consensus 175 ~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~ 204 (344)
T 1za6_B 175 SGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 204 (344)
T ss_dssp TSCEEEEEEEEEETTHHHH-BCEEEEEEEGG
T ss_pred CCCEEEEEEEEEcHHHcCC-CcEEEEEEeCC
Confidence 221 123468898888888 99999999973
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=126.37 Aligned_cols=170 Identities=12% Similarity=0.146 Sum_probs=106.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eee-cceeeec----CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTV-GSYTYTS----DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~-~~~~~~~----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.| ..+.+.+.+.|+|...... ... +...... ++|+.+.. ...++++|+|.+++.+|+|.|.|.+.+
T Consensus 20 v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 97 (245)
T 4ei6_B 20 VTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVER-PDGSYFTLKIQPTALEDSAVYFCASSF 97 (245)
T ss_dssp EEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEEC-CTTSCEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEe-ccCceEEEEECCCCHhHCEEEEEEEcc
Confidence 46999 6678889999998432111 111 1111111 27888875 345688999999999999999999985
Q ss_pred C-----CceeEEEEEEEec------ccc-eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCcee
Q psy13371 72 Q-----PVRSFFVNLNVVV------PTA-EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139 (212)
Q Consensus 72 ~-----~~~~~~~~l~v~~------~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~ 139 (212)
. ........|.|.. +|. .+..+....+.+|+.+.|.|.+.+.+++...+.|+++|..+..........
T Consensus 98 ~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~ 177 (245)
T 4ei6_B 98 WGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQP 177 (245)
T ss_dssp SSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSC
T ss_pred CCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCCCccccccc
Confidence 2 1223345667763 222 233344445667999999999988654444699999998773211000000
Q ss_pred EEe----ecCce-EEEEEEEeeeeecC-CEEEEEEcccC
Q psy13371 140 VIT----EKGEV-TTSYLLIQQAELKD-SGKYSCSPSNA 172 (212)
Q Consensus 140 ~~~----~~~~~-~~~~l~i~~~~~~d-~g~y~C~~~n~ 172 (212)
... .++.. ..+.|.|.....+| .|.|+|.+.|.
T Consensus 178 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~ 216 (245)
T 4ei6_B 178 LKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFY 216 (245)
T ss_dssp EESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred ccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEEC
Confidence 000 12221 23458887777777 89999999986
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-19 Score=127.15 Aligned_cols=170 Identities=15% Similarity=0.197 Sum_probs=106.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----e-cceeeec----CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----V-GSYTYTS----DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~-~~~~~~~----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+. .+.+.+.|+|........ . +...... ++|+.+..+ ..++++|+|.+++.+|+|.|.|.+.+
T Consensus 44 v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~ 121 (268)
T 3pl6_D 44 VELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP-EGSVSTLKIQRTERGDSAVYLCATSA 121 (268)
T ss_dssp EEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEEEECSCCGGGCEEEEEEEES
T ss_pred EEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec-CCCEEEEEECCCCcccCEEEEEEEec
Confidence 36899987 577899999954211111 1 1111111 178888753 45688999999999999999999986
Q ss_pred C---CceeEEEEEEEec------ccc-eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeE-
Q psy13371 72 Q---PVRSFFVNLNVVV------PTA-EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV- 140 (212)
Q Consensus 72 ~---~~~~~~~~l~v~~------~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~- 140 (212)
. ........|.|.. +|. .+..+....+.+|+.++|.|.+.+.+.+...+.|+++|..+...........
T Consensus 122 ~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~ 201 (268)
T 3pl6_D 122 LGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLK 201 (268)
T ss_dssp SSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEE
T ss_pred CCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEecccccc
Confidence 3 1223344566764 222 2233444456679999999999987655446999999987732100000000
Q ss_pred ---EeecCce-EEEEEEEeeeeecC-CEEEEEEcccC
Q psy13371 141 ---ITEKGEV-TTSYLLIQQAELKD-SGKYSCSPSNA 172 (212)
Q Consensus 141 ---~~~~~~~-~~~~l~i~~~~~~d-~g~y~C~~~n~ 172 (212)
...++.. ..+.|.+.....+| .|.|+|.+.|+
T Consensus 202 ~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~ 238 (268)
T 3pl6_D 202 EQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY 238 (268)
T ss_dssp SSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred ccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcC
Confidence 0012222 23457777776666 99999999986
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-19 Score=124.60 Aligned_cols=169 Identities=16% Similarity=0.233 Sum_probs=103.0
Q ss_pred CeeEeeeCCCC--CceE--EEEeeCcceeeee-------cc--e---eeecCCceEEEeeCCCCeEEEEEcccCCCCCEE
Q psy13371 1 MLHQRKLKGLL--PTRV--SWIRHRDIHILTV-------GS--Y---TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGV 64 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v--~W~~~~~~~~~~~-------~~--~---~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~ 64 (212)
+.|.|.+.+.+ .+.+ .|+|......... +. . .....+|+.+..+...++.+|+|.+++.+|+|.
T Consensus 18 v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~ 97 (232)
T 3qhz_H 18 LTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTNMDPVDTAT 97 (232)
T ss_dssp EEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred EEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECcCChhhCEE
Confidence 46999998742 3445 9998653221110 00 0 001236999987767788999999999999999
Q ss_pred EEEEecCCC---------ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEe
Q psy13371 65 YECQLSTQP---------VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131 (212)
Q Consensus 65 Y~C~~~~~~---------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~ 131 (212)
|.|.+.+.. .......|.|.. +|.....++...+..|+.+.|.|.+.+.+++...+.|++++..+..
T Consensus 98 Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~ 177 (232)
T 3qhz_H 98 YYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV 177 (232)
T ss_dssp EEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred EEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecce
Confidence 999998641 122334566652 2222223333455679999999999986655656889988863311
Q ss_pred eCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 132 DSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 132 ~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.... .....++.. ..+.|.|......| |.|+|.+.|+.
T Consensus 178 ~~~~---~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~ 216 (232)
T 3qhz_H 178 HTFP---AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 216 (232)
T ss_dssp EECC---CEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGG
T ss_pred eecc---ceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCC
Confidence 1110 112222322 23568888888888 99999999983
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=132.91 Aligned_cols=151 Identities=21% Similarity=0.367 Sum_probs=107.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~ 78 (212)
+.|.|.+.+.|.+.+.|+|++. .+.... .+.++... .+..|.|.+++.+|+|.|+|.+.+.. .....
T Consensus 139 v~l~C~~~~~p~~~v~W~~~~~-~~~~~~-----~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~ 207 (403)
T 3laf_A 139 VLLKCEVIGDPMPTIHWQKNQQ-DLNPIP-----GDSRVVVL-----PSGALQISRLQPGDSGVYRCSARNPASTRTGNE 207 (403)
T ss_dssp EEECCCEECSSCCEEEEEESSS-BCCCCT-----TCCSEEEC-----TTSCEEECSCCGGGCEEEEEEEECSSCCCBCCC
T ss_pred EEEEEEEcccCCCeEEEEECCE-eccccC-----CceEEEEc-----CCceEEEcccccccCEEEEEEEEcCCCceeccc
Confidence 3689999999999999999874 221111 12233332 23379999999999999999999852 23345
Q ss_pred EEEEEecccc------eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 79 VNLNVVVPTA------EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 79 ~~l~v~~~~~------~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
+.+.|...+. ....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+.... ........+ .|
T Consensus 208 ~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--~~W~~~~~~~~~~~---~~~~~~~~~-----~L 277 (403)
T 3laf_A 208 AEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPS--FTWLRGEEVIQLRS---KKYSLLGGS-----NL 277 (403)
T ss_dssp EEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCE--EEEEETTEECCCSS---SSEEEETTT-----EE
T ss_pred eeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCe--EEEEECCeeccCCC---ceEEECCcc-----EE
Confidence 6666765432 23345667788999999999999887665 99999998763221 112222222 49
Q ss_pred EEeeeeecCCEEEEEEcccC
Q psy13371 153 LIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|.++..+|+|.|+|.+.|.
T Consensus 278 ~i~~~~~~d~G~Y~C~a~n~ 297 (403)
T 3laf_A 278 LISNVTDDDSGTYTCVVTYK 297 (403)
T ss_dssp EECSCCGGGCEEEEEEEEET
T ss_pred EEeCCCHHHCEEEEEEEEcC
Confidence 99999999999999999987
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=137.54 Aligned_cols=167 Identities=14% Similarity=0.222 Sum_probs=110.8
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeeecce----------eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTVGSY----------TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~----------~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.|.| .+.+.|+|+........-.. .....+|+.+..+...+..+|.|.+++.+|+|.|+|.
T Consensus 236 v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 315 (438)
T 1qgc_4 236 LKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCV 315 (438)
T ss_dssp EEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEE
T ss_pred EEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEE
Confidence 36899999988 68999999732111111000 0012478888766566788999999999999999999
Q ss_pred ecCC-C-----ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCc
Q psy13371 69 LSTQ-P-----VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGG 137 (212)
Q Consensus 69 ~~~~-~-----~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~ 137 (212)
+.|. + .......+.|.. +|.....++...+.+|+.++|.|.+.+. |.| ..+.|++++..+......
T Consensus 316 a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~-~~v~W~~~g~~~~~~~~~-- 392 (438)
T 1qgc_4 316 RREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEP-VTVTWNSGSLSSGVHTFP-- 392 (438)
T ss_dssp ECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSC-CEEEEGGGTCCSSEEECC--
T ss_pred EEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCC-cEEEEecCCCCCceeecC--
Confidence 9973 1 122345666753 2322333333456789999999999986 544 259999998765322111
Q ss_pred eeEEeecC-ceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 138 VSVITEKG-EVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 138 ~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.....+ ....+.|.|.+...+| |.|+|.|.|+.
T Consensus 393 --~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~ 426 (438)
T 1qgc_4 393 --AVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPA 426 (438)
T ss_dssp --CEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGG
T ss_pred --ccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCC
Confidence 111223 2234569998888888 99999999983
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-19 Score=126.41 Aligned_cols=177 Identities=15% Similarity=0.193 Sum_probs=107.7
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeeec-------ceee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTVG-------SYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~-------~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+. +.+.+.|+|.........- .... ...+|+.+..+...++.+|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 97 (253)
T 3liz_H 18 LKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSEDTAMYYCT 97 (253)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEE
Confidence 3699999874 4689999996532111110 0000 12479999876667889999999999999999999
Q ss_pred ecCCC-----ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCcee
Q psy13371 69 LSTQP-----VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139 (212)
Q Consensus 69 ~~~~~-----~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~ 139 (212)
+.+.. .......|.|.. +|.....+....+..|+.+.|.|.+.+..++...+.|++++......... .
T Consensus 98 ~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~--~- 174 (253)
T 3liz_H 98 RDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFP--A- 174 (253)
T ss_dssp ECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC--C-
T ss_pred EecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCC--c-
Confidence 98742 122335677752 22222233334566799999999999843233369999988633111100 0
Q ss_pred EEeecCceEEEEEEEeeeeecCCEEEEEEcccCC-eeEEEEEE
Q psy13371 140 VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD-VASVYVHV 181 (212)
Q Consensus 140 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-~~~~~~~v 181 (212)
..........+.|.|.+...+| |.|+|.+.|.. .......+
T Consensus 175 ~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~ 216 (253)
T 3liz_H 175 VLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 216 (253)
T ss_dssp EEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred cccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEe
Confidence 1111111223568888888888 99999999983 34444433
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=144.04 Aligned_cols=155 Identities=20% Similarity=0.307 Sum_probs=112.9
Q ss_pred CeeEeeeCCCCC-ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGLLP-TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.+.+. +.+.|++++. .+.. +.++.... .......|.|.+++.+|+|.|+|.+.|. +..+..
T Consensus 637 v~L~C~~~~~~~~~~i~W~~~g~-~l~~--------~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~ 706 (816)
T 3dmk_A 637 LTLHCSVPGGDLPLNIDWTLDGQ-AISE--------DLGITTSR-VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT 706 (816)
T ss_dssp EEEEEBCCCSSSCCEEEEEETTB-CCCG--------GGTCEEEE-ETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred EEEEEEEeCCCCCCEEEEEECCe-EcCC--------CCCeeEEE-cCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEE
Confidence 368999987665 4999999873 2211 11222221 2345678999999999999999999986 556677
Q ss_pred EEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC--CCceeEEeecCceEEEEEEEee
Q psy13371 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS--RGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 79 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
+.|.|..+|.....+.+..+..|+.+.|.|.+.+.|.|. +.|++++..+..... ..........+ .|.|.+
T Consensus 707 ~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~--i~W~k~~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~ 779 (816)
T 3dmk_A 707 TPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQ--VTWKKAVGDTPGEYKDLKKSDNIRVEEG-----TLHVDN 779 (816)
T ss_dssp EEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCE--EECCEECSSSTTCCBCCCCBTTEEEETT-----EEEECS
T ss_pred EEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCe--EEEEecCCCCCccccccccCCCEEecCC-----EEEECc
Confidence 788888888777778888899999999999999988776 999998754311000 00001111222 499999
Q ss_pred eeecCCEEEEEEcccC
Q psy13371 157 AELKDSGKYSCSPSNA 172 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~ 172 (212)
+..+|+|.|+|.|.|.
T Consensus 780 v~~~d~G~Y~C~a~N~ 795 (816)
T 3dmk_A 780 IQKTNEGYYLCEAING 795 (816)
T ss_dssp CCGGGCEEEEEEEECS
T ss_pred CChhhCeEEEEEEEeC
Confidence 9999999999999998
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=130.08 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=103.1
Q ss_pred CeeEeeeCCCCC-----------ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLLP-----------TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p~-----------~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+.|. +.+.|+|++..............+.|+... +..|.|.+++.+|+|.|+|.+
T Consensus 25 v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~a 98 (349)
T 4dep_C 25 ARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE------KDVLWFRPTLLNDTGNYTCML 98 (349)
T ss_dssp EEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE------TTEEEESSCCGGGCEEEEEEE
T ss_pred EEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec------CCEEEEccCChhhCEEEEEEE
Confidence 368999998764 999999987321111100000012333332 227999999999999999999
Q ss_pred cCC-CceeEEEEEEEeccccee----eCCCceeeeCCCcEEEEeEE-----eeCCCCCceEEEEEcCeEEEeeCCCCcee
Q psy13371 70 STQ-PVRSFFVNLNVVVPTAEI----LGSPDLHVDEGSTINLTCSI-----KYSPEPPAYIFWYHHDEVISYDSSRGGVS 139 (212)
Q Consensus 70 ~~~-~~~~~~~~l~v~~~~~~~----~~~~~~~~~~g~~~~l~C~~-----~~~~~p~~~v~W~~~~~~~~~~~~~~~~~ 139 (212)
.+. +.....+.|.|..++... ..+....+.+|+.+.|.|.+ .+.|.| .+.|++++..+.. . .
T Consensus 99 ~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~--~v~W~k~~~~l~~----~--~ 170 (349)
T 4dep_C 99 RNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKP--TITWYMGCYKIQN----F--N 170 (349)
T ss_dssp ECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCC--EEEEEETTEECCS----C--S
T ss_pred ecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCc--eEEEeeCCEECCC----c--c
Confidence 985 345556777877644322 12334567889999999985 444444 4999999987721 1 1
Q ss_pred EEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 140 VITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 140 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.....+ ..|.|.++..+|+|.|+|.|.|.
T Consensus 171 ~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~ 199 (349)
T 4dep_C 171 NVIPEG----MNLSFLIALISNNGNYTCVVTYP 199 (349)
T ss_dssp SEEEET----TEEEEESCCGGGCEEEEEEEEEE
T ss_pred ceeecC----CEEEEeeeeecCCcEEEEEEEEe
Confidence 112222 24999999999999999999986
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-19 Score=126.87 Aligned_cols=170 Identities=18% Similarity=0.209 Sum_probs=98.6
Q ss_pred CeeEeeeCCCCCce-----EEEEeeCcceeeeecceeee------cCCceEEE-eeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLLPTR-----VSWIRHRDIHILTVGSYTYT------SDQRFSAI-HRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p~~~-----v~W~~~~~~~~~~~~~~~~~------~~~r~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.|.+. +.|+|.+.........+... ..++..+. .....++.+|.|.+++.+|+|.|+|.
T Consensus 21 v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 100 (248)
T 3pv7_A 21 VTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCE 100 (248)
T ss_dssp EEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGGGCEEEEEE
T ss_pred EEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHHHCeEEEEE
Confidence 46899998887665 99999753211100000000 01111111 01234566799999999999999999
Q ss_pred ecCCC-ceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEEeeC--CCC---ceeEE
Q psy13371 69 LSTQP-VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVISYDS--SRG---GVSVI 141 (212)
Q Consensus 69 ~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~~--~~~---~~~~~ 141 (212)
+.+.. .....+.|.|..+|.....+. .....|+.+.|.|.+.+ .|.| ..+.|+++++.+.... ... .....
T Consensus 101 ~~~~~~~~~~~~~L~V~~~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~p-i~v~W~k~g~~l~~~~~~~~~~~~~~~~~ 178 (248)
T 3pv7_A 101 VVVTPLKAQGTVQLEVVASPASRLLLD-QVGMKENEDKYMCESSGFYPEA-INITWEKQTQKFPHPIEISEDVITGPTIK 178 (248)
T ss_dssp EEETTEEEEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSC-CEEEEEEECSSSCSCEEECTTEEEEEEEE
T ss_pred EEeCCccceeEEEEEEecCCceEEecC-CccccCCCcEEEEEEccEECCC-eEEEEEECCccCCCccccccceeecccEE
Confidence 98753 455667788877665444443 33456778889999988 5555 2599999986432100 000 01111
Q ss_pred eecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 142 TEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 142 ~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..++.. ..+.|.+.....+|.|.|+|.|.|.
T Consensus 179 ~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~ 210 (248)
T 3pv7_A 179 NMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHA 210 (248)
T ss_dssp CTTSCEEEEEEEECC--CCCTTCEEEEEEECT
T ss_pred CCCCCEEEEEEEEEcCccccCCCEEEEEEECC
Confidence 122222 2356888888889999999999997
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-20 Score=134.88 Aligned_cols=151 Identities=19% Similarity=0.263 Sum_probs=97.3
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.+. |.+.+.|+|++. .+.. +.++... .+...|.|.+++.+|+|.|+|.+.+. +.....
T Consensus 24 v~l~C~~~~~~p~~~v~W~~~~~--~~~~-------~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~ 90 (317)
T 2y25_A 24 VLLKCKVANIKKETHIVWYKDER--EISV-------DEKHDFK----DGICTLLITEFSKKDAGIYEVILKDDRGKDKSR 90 (317)
T ss_dssp EEEEEEEESCCTTCEEEEEETTE--EECC-------SCC---------CCEEEEETTCCSTTCSCEEEEEESSSCEEEEE
T ss_pred EEEEEEEcCCCCCCEEEEEECCe--EcCC-------CCcEEEE----CCeEEEEEccCCcccCeEEEEEEECCCCcEEEE
Confidence 4689999998 889999999873 2221 2233332 34579999999999999999999885 333333
Q ss_pred EEEEEecccceeeCCCceeeeCCCcEEEEeEEee----------CCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceE
Q psy13371 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKY----------SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148 (212)
Q Consensus 79 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----------~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (212)
+.|.+..++.....+....+..|+.+.|.|.+.+ .|.+ .+.|++++..+... .+......+.
T Consensus 91 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~--~i~W~~~~~~~~~~----~~~~~~~~~~-- 162 (317)
T 2y25_A 91 LKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDL--KVNWSHNGSAIRYS----DRVKTGVTGE-- 162 (317)
T ss_dssp ECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSC--EEEEEESSSBCCCC----SSEEEEECSS--
T ss_pred EEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCc--EEEEEECCEECCCC----CCeEEeccCC--
Confidence 3333333322222222234455666666666654 3344 59999999877421 2222323332
Q ss_pred EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...|.|.++..+|.|.|+|.+.|.
T Consensus 163 ~~~L~i~~~~~~d~G~Y~C~a~n~ 186 (317)
T 2y25_A 163 QIWLQINEPTPNDKGKYVMELFDG 186 (317)
T ss_dssp EEEEEEESCCGGGCEEEEEEEECS
T ss_pred EEEEEECcCCcccCeeEEEEEEeC
Confidence 245999999999999999999997
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=134.33 Aligned_cols=158 Identities=14% Similarity=0.193 Sum_probs=81.0
Q ss_pred CeeEeee-----CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--C
Q psy13371 1 MLHQRKL-----KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--P 73 (212)
Q Consensus 1 ~~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~ 73 (212)
+.|.|.+ .+.|.+.+.|+|++. .+.. +.++... ...|.|.+++.+|+|.|+|.+.+. +
T Consensus 138 ~~l~C~~~~~~~~g~p~~~v~W~k~~~--~l~~-------~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~~~g 202 (349)
T 4dep_C 138 QRITCPNVDGYFPSSVKPTITWYMGCY--KIQN-------FNNVIPE------GMNLSFLIALISNNGNYTCVVTYPENG 202 (349)
T ss_dssp EEEECCSCTTSSCTTSCCEEEEEETTE--ECCS-------CSSEEEE------TTEEEEESCCGGGCEEEEEEEEEEETT
T ss_pred EEEEcCCCcccccCCCCceEEEeeCCE--ECCC-------ccceeec------CCEEEEeeeeecCCcEEEEEEEEeeCC
Confidence 3689974 778999999999873 2211 1122221 137999999999999999999984 3
Q ss_pred ce---eEEEEEEEecc-----cceeeCCCce---eeeCCCcEEEEeEEeeCC--CCCceEEEEEcCeEEEeeCCCCce-e
Q psy13371 74 VR---SFFVNLNVVVP-----TAEILGSPDL---HVDEGSTINLTCSIKYSP--EPPAYIFWYHHDEVISYDSSRGGV-S 139 (212)
Q Consensus 74 ~~---~~~~~l~v~~~-----~~~~~~~~~~---~~~~g~~~~l~C~~~~~~--~p~~~v~W~~~~~~~~~~~~~~~~-~ 139 (212)
.. +..+.|.|..+ ++.+..+... .+.+|+.+.|.|.+.+.+ .|.+.+.|++++..+......... .
T Consensus 203 ~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~ 282 (349)
T 4dep_C 203 RTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINE 282 (349)
T ss_dssp EEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCE
T ss_pred EEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCcccccc
Confidence 22 45666667653 3344333322 678899999999998541 234459999999877531111000 0
Q ss_pred -EE-e-ecCceEEEEEEEeeeeecCC-EEEEEEcccCC
Q psy13371 140 -VI-T-EKGEVTTSYLLIQQAELKDS-GKYSCSPSNAD 173 (212)
Q Consensus 140 -~~-~-~~~~~~~~~l~i~~~~~~d~-g~y~C~~~n~~ 173 (212)
.. . ..+....+.|.|.++..+|. |.|+|.|.|..
T Consensus 283 ~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~ 320 (349)
T 4dep_C 283 SISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAK 320 (349)
T ss_dssp EEECCTTCCEEEEECC-------------CEEEEECSS
T ss_pred ceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCC
Confidence 00 0 02222345599999999999 99999999983
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-19 Score=132.97 Aligned_cols=147 Identities=20% Similarity=0.241 Sum_probs=102.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecc-eee----ecCCceEEEeeC-CCCeEEEEEcccCCCCCEEEEEEecCCCc
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGS-YTY----TSDQRFSAIHRR-EGDEWTLHIKWAQKRDAGVYECQLSTQPV 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~----~~~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 74 (212)
+.|.|.+.+.|.+.+.|+|++...+..... ... ...+|+.+..+. ..+..+|.|.+++.+|+|.|+|.+.+.
T Consensus 12 v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~-- 89 (363)
T 1wio_A 12 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQ-- 89 (363)
T ss_dssp EEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEEEEETTE--
T ss_pred EEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEEEEEEEC--
Confidence 368999999999999999987422221111 000 112455543110 234668999999999999999999985
Q ss_pred eeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEE
Q psy13371 75 RSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154 (212)
Q Consensus 75 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 154 (212)
...+.|.|... ... +...+.+|+.+.|.|.+.+.|.|. +.|++++..... .. ..|.|
T Consensus 90 -~~~~~l~V~~~---~~~-~~~~v~~G~~v~l~C~~~~~p~~~--v~W~~~~~~~~~-----------~~-----~~L~i 146 (363)
T 1wio_A 90 -KEEVQLLVFGL---TAN-SDTHLLQGQSLTLTLESPPGSSPS--VQCRSPRGKNIQ-----------GG-----KTLSV 146 (363)
T ss_dssp -EEEEEEEEEEE---EES-SCSSEESBSCEEEEEECCTTCCCC--EEEECSSSCEEE-----------ES-----SEEEE
T ss_pred -CCcEEEEEEeC---CCC-CceEEecCCCEEEEEEcCCCCCCe--EEEEcCCCcccc-----------cc-----eEEEE
Confidence 23556666531 122 234678999999999998876666 999988754411 11 24999
Q ss_pred eeeeecCCEEEEEEcccC
Q psy13371 155 QQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 155 ~~~~~~d~g~y~C~~~n~ 172 (212)
.++..+|+|.|+|.+.|.
T Consensus 147 ~~v~~~d~G~Y~C~a~~~ 164 (363)
T 1wio_A 147 SQLELQDSGTWTCTVLQN 164 (363)
T ss_dssp CSBCGGGCEECEEEEEET
T ss_pred eeCChhcCCEEEEEEecC
Confidence 999999999999999987
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=139.39 Aligned_cols=139 Identities=24% Similarity=0.371 Sum_probs=107.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc-eeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV-RSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~-~~~~ 78 (212)
+.|.|.+.+ |.+.+.|+|++. .+.. +.|+.+.. .+..|.|.+++.+|+|.|+|.+.|. +. .+..
T Consensus 485 v~l~C~~~~-~~~~i~W~~~g~--~l~~-------~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~ 550 (642)
T 1e07_A 485 VAFTCEPEA-QNTTYLWWVNGQ--SLPV-------SPRLQLSN----GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDP 550 (642)
T ss_pred EEEEEECCC-CCcEEEEEECCE--eCCC-------CCcEEEcC----CCcEEEEeecChhcCceEEEEeEcCCCCccCCC
Confidence 368999995 789999999873 2221 23444432 3458999999999999999999986 32 3445
Q ss_pred EEEEEecccc-eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 79 VNLNVVVPTA-EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 79 ~~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+.|.|..+|. ....+.+..+..|+.+.|.|.+.+.|.|. +.|+++|..+... ..|.|.++
T Consensus 551 ~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~--v~W~~~g~~i~~~-----------------~~L~i~~~ 611 (642)
T 1e07_A 551 VTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQ--YSWRINGIPQQHT-----------------QVLFIAKI 611 (642)
T ss_pred EEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCe--EEEEECCEECccC-----------------ceEEECcc
Confidence 7788876553 44556677899999999999999887776 9999999876310 13999999
Q ss_pred eecCCEEEEEEcccC
Q psy13371 158 ELKDSGKYSCSPSNA 172 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~ 172 (212)
..+|+|.|+|.|.|.
T Consensus 612 ~~~d~G~Y~C~a~N~ 626 (642)
T 1e07_A 612 TPNNNGTYACFVSNL 626 (642)
T ss_pred cccCCeEEEEEEEec
Confidence 999999999999997
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=120.43 Aligned_cols=165 Identities=18% Similarity=0.227 Sum_probs=101.8
Q ss_pred CeeEeeeCCCC--CceEEEEeeCccee----eeec--ce-ee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHI----LTVG--SY-TY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~----~~~~--~~-~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+.+ .+.+.|+|...... .... .. .. ...+|+.+..+...++.+|+|.+++.+|+|.|.|.+
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 97 (215)
T 1c5d_H 18 LSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTR 97 (215)
T ss_dssp EEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred EEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcccCEEEEEEE
Confidence 36999999865 58999999752111 1110 00 00 124688887655567889999999999999999999
Q ss_pred cCCC----ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeE
Q psy13371 70 STQP----VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSV 140 (212)
Q Consensus 70 ~~~~----~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~ 140 (212)
.+.. .....+.|.|.. +|.....++...+..|+.+.|.|.+.+. |.| ..+.|.+++....... ...
T Consensus 98 ~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g~~~~~~~----~~~ 172 (215)
T 1c5d_H 98 EDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEP-VTVTWNSGALSSDVHT----FPA 172 (215)
T ss_dssp CCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSC-CEEEEGGGTTCCSCCB----CCC
T ss_pred ecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCC-cEEEEccCCccCceEe----cCc
Confidence 8852 122345777763 2222222222345789999999999876 544 3599999886432110 011
Q ss_pred EeecCceE-EEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 141 ITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 141 ~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
....+... .+.|. ....+| |.|+|.+.|..
T Consensus 173 ~~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~ 203 (215)
T 1c5d_H 173 VLQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPA 203 (215)
T ss_dssp EEETTEEEEEEEEE--ESSTTT-SCCEEEEEEGG
T ss_pred ccCCCCEEEEEEEe--cccCCC-CeEEEEEEeCC
Confidence 11223211 12233 333355 99999999983
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=133.63 Aligned_cols=150 Identities=11% Similarity=0.137 Sum_probs=100.5
Q ss_pred eeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-C--ceeE
Q psy13371 2 LHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-P--VRSF 77 (212)
Q Consensus 2 ~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~--~~~~ 77 (212)
.|.|.+ .+.|.+.+.|++++. .+.... ....+..... ...|.|.++..+|.|.|+|.+.+. + ....
T Consensus 133 ~l~C~~~~g~P~~~i~W~~~~~-~~~~~~--~~~~~~~~~~-------~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 202 (308)
T 4fom_A 133 AAICIAATGKPVAHIDWEGDLG-EMESTT--TSFPNETATI-------ISQYKLFPTRFARGRRITCVVKHPALEKDIRY 202 (308)
T ss_dssp EEEEEEEEEBSCCEEEECCCSS-BCCEEE--EECTTSCEEE-------EEEEEECCCGGGTTCEEEEEEECTTCSSCEEE
T ss_pred EEEEEecCCcCCceEEEEECCc-cccccc--ceeeeecccc-------cccceEEeeeecCCccEEEEEEccCCCCceEE
Confidence 578875 678999999999874 222111 1111122222 236899999999999999999985 2 3344
Q ss_pred EEEEEEecccceeeC-CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEee
Q psy13371 78 FVNLNVVVPTAEILG-SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 78 ~~~l~v~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.+.|.|..+|..... .....+..|+.++|.|.+.+.|.| ..+.|++++..+... ....++ ..+.|.+
T Consensus 203 ~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p-~~v~W~k~~~~~~~~-------~~~~~~----~~l~i~~ 270 (308)
T 4fom_A 203 SFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPP-FKSVWSRLDGQWPDG-------LLASDN----TLHFVHP 270 (308)
T ss_dssp EEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCE-EEEECCBSSSCCCSS-------CBCSTT----EEECCSC
T ss_pred eEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCC-cEEEEEECCeECCCc-------EEEcCC----eEEEECC
Confidence 555666666544333 334456778899999999998755 248999988765211 011111 2367888
Q ss_pred eeecCCEEEEEEcccCC
Q psy13371 157 AELKDSGKYSCSPSNAD 173 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~~ 173 (212)
+..+|+|.|+|.|.|..
T Consensus 271 v~~~d~G~Y~C~A~N~~ 287 (308)
T 4fom_A 271 LTFNYSGVYICKVTNSL 287 (308)
T ss_dssp CCSCCCSEEEEEEEETT
T ss_pred CChhhCEEEEEEEEeCC
Confidence 99999999999999983
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=131.45 Aligned_cols=161 Identities=15% Similarity=0.257 Sum_probs=95.7
Q ss_pred CeeEeeeCCCCCc--eEEEEeeCcceeeeecceeee---cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCce
Q psy13371 1 MLHQRKLKGLLPT--RVSWIRHRDIHILTVGSYTYT---SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR 75 (212)
Q Consensus 1 ~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 75 (212)
+.|.|.+.+.|.+ .+.|+|++. .+........ .++.+.+. ..|.|.....+|.|.|+|.+.+....
T Consensus 135 ~~l~C~~~g~p~~~~~v~W~k~g~--~l~~~~~~~~~~~~~~~~~~~-------s~L~i~~~~~d~~g~Y~C~a~n~~~~ 205 (327)
T 2wng_A 135 VSFTCESHGFSPRDITLKWFKNGN--ELSDFQTNVDPVGESVSYSIH-------STAKVVLTREDVHSQVICEVAHVTLQ 205 (327)
T ss_dssp EEEEEEEEEEBSSCCEEEEEETTE--ECCCEEEEEECSSCCSCEEEE-------EEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred EEEEEEEeCccCCCcEEEEEECCE--EccccccccccccCCCceEEE-------EEEEEechhcCcCceEEEEEeccccC
Confidence 3689999998765 899999773 2221111111 12333333 25788877777889999999985311
Q ss_pred ----eEEEEEE--EecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eE
Q psy13371 76 ----SFFVNLN--VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VT 148 (212)
Q Consensus 76 ----~~~~~l~--v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~ 148 (212)
.....+. +..+|.....+.. +.+|+.+.|.|.+.+.+++...+.|+++|..+...... ......++. ..
T Consensus 206 ~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~--~~~~~~~g~~~~ 281 (327)
T 2wng_A 206 GDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS--TVTENKDGTYNW 281 (327)
T ss_dssp SCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECC--SCEECTTSCEEE
T ss_pred CCcccceEEeccccCCCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccC--ceEECCCCcEEE
Confidence 2223322 2334433322222 67899999999999865554469999999987643211 122222332 22
Q ss_pred EEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
.+.|.|.++..+|.|.|+|.|.|+..
T Consensus 282 ~~~L~i~~~~~~d~G~Y~C~a~N~~~ 307 (327)
T 2wng_A 282 MSWLLVNVSAHRDDVKLTCQVEHDGQ 307 (327)
T ss_dssp EEEEEC-------CCEEEEEEEETTC
T ss_pred EEEEEEccccccCCCEEEEEEEeCCC
Confidence 34588888899999999999999843
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.80 E-value=8.8e-19 Score=131.82 Aligned_cols=142 Identities=15% Similarity=0.027 Sum_probs=99.9
Q ss_pred eeEeeeCC-----CCCceEEEEeeCcceeeeecceeeecCCceEEEeeC--------CCCeEEEEEcccCCCCCEEEEEE
Q psy13371 2 LHQRKLKG-----LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR--------EGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 2 ~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--------~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
.|.|.+.+ .|.|.+.|++++. .+..........+.++.+.... ..+...|.|.+++.+|+|.|+|.
T Consensus 195 ~l~C~~~~~~~~~~P~p~i~W~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 273 (363)
T 1wio_A 195 EFSFPLAFTVEKLTGSGELWWQAERA-SSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT 273 (363)
T ss_dssp EEECCCCCCCCSSCEEEEEEEEESSC-CCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEE
T ss_pred EEEEEEecccccCCCceeEEEecCCC-CccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEE
Confidence 68998888 7889999999774 2211100000113344443111 22355899999999999999999
Q ss_pred ecCC---CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC
Q psy13371 69 LSTQ---PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145 (212)
Q Consensus 69 ~~~~---~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 145 (212)
+.|. +..+..+.|.|.. ..|+.+.|.|.+.+.|.|...+.|++++..+.. .
T Consensus 274 a~n~~~~g~~~~~~~l~V~~-------------v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~------------~- 327 (363)
T 1wio_A 274 LALEAKTGKLHQEVNLVVMR-------------ATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV------------S- 327 (363)
T ss_dssp ECBTTTTCCEEEEEEEEEEE-------------ECCCSSSEEEEEESSCCTTCCEEEECSSSSCSE------------E-
T ss_pred EEEhhhcCeEEEEEeEEEEE-------------ecCCCeeEEEEEccccCCCccEEEEeCCCceee------------e-
Confidence 9987 4455666666651 128889999999988777767999999976521 1
Q ss_pred ceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 146 EVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 146 ~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
..|.|.++..+|+|.|+|.|.|...
T Consensus 328 ----~~l~i~~v~~~d~G~Y~C~a~~~~~ 352 (363)
T 1wio_A 328 ----KREKAVWVLNPEAGMWQCLLSDSGQ 352 (363)
T ss_dssp ----ESSSEEEESSCCSEEEEEEECSSSS
T ss_pred ----eeeeeeeeccccceeEEEEEecCCe
Confidence 1267789999999999999998743
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-18 Score=117.46 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=97.1
Q ss_pred CeeEeeeCC----CCCceEEEEeeCcceeeeecceee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKG----LLPTRVSWIRHRDIHILTVGSYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~----~p~~~v~W~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.+ .|.+.+.|++++............ ...+|..+. ..++.+|+|.+++.+|+|.|+|.+.+..
T Consensus 12 v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~---~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 88 (201)
T 1dr9_A 12 ATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD---ITNNLSIVILALRPSDEGTYECVVLKYE 88 (201)
T ss_dssp EEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE---STTTTEEEECSCCGGGCEEEEEEEEECC
T ss_pred EEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc---cCCCcEEEEecccchhCeEEEEEEEcCC
Confidence 468999964 366899999976321111111100 012344442 1245689999999999999999999842
Q ss_pred --ce----eEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEe-eCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc
Q psy13371 74 --VR----SFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146 (212)
Q Consensus 74 --~~----~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 146 (212)
.. ...+.|.|..++..... .......|+.+.|.|.+. +.|.|. +.|++++..+... ........++.
T Consensus 89 g~~~~~~~~~~~~l~V~~~~~~p~~-~~~~~~~g~~~~l~C~~~~g~P~p~--i~W~k~g~~l~~~---~~~~~~~~~~~ 162 (201)
T 1dr9_A 89 KDAFKREHLAEVTLSVKADFPTPSI-SDFEIPTSNIRRIICSTSGGFPEPH--LSWLENGEELNAI---NTTVSQDPETE 162 (201)
T ss_dssp TTSCEEEEEEEEEEEEECCCCCCEE-EEEECSSTTEEEEEEEEEEESSCEE--EEEEESSCEECCS---EEEEEECTTTC
T ss_pred CCccccccccEEEEEEcCCCCCCce-EeccCCCCCeEEEEEecCCccCCCE--EEEEECCEECccc---cceEEecCCCc
Confidence 11 34566666654211000 001124588899999995 776665 9999999877321 11112222212
Q ss_pred eEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 147 VTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
.. ....+..+..+|.|.|+|.|.|+..
T Consensus 163 ~~-~~~~~~~v~~~d~g~Y~C~a~n~~~ 189 (201)
T 1dr9_A 163 LY-AVSSKLDFNMTTNHSFMCLIKYGHL 189 (201)
T ss_dssp CE-EEEEEEEEETTSCEEEEEEEEETTC
T ss_pred EE-EEEEEEEEEecCCCEEEEEEecCcc
Confidence 11 1122345566899999999999843
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-18 Score=117.58 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=96.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC------Cc
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ------PV 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~------~~ 74 (212)
+.|.|.+.+ +.+.+.|+|++.. +..... ..++ ........|.|.+++.+|+|.|+|.+.+. ..
T Consensus 25 v~L~C~~~~-~~~~~~w~k~g~~-~~~~~~-----~~~~----~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~ 93 (201)
T 1nkr_A 25 VILQCWSDV-MFEHFLLHREGMF-NDTLRL-----IGEH----HDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSA 93 (201)
T ss_dssp EEEEEEESS-CCSEEEEEEESSS-CEEEEE-----ECEE----ETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCC
T ss_pred EEEEEeccC-CCCEEEEEECCCc-CCccee-----eeec----CCCCceEEEEeccCCcccCeEEEEeEecCCCCccccC
Confidence 469999974 7789999998742 211110 0000 01224568999999999999999999653 12
Q ss_pred eeEEEEEEEecc--cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 75 RSFFVNLNVVVP--TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 75 ~~~~~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
.+..+.|.|... ++.+...+...+.+|+.++|.|.+.+ +.+ .+.|++++..+..... ......+ .....|
T Consensus 94 ~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~--~~~w~k~g~~~~~~~~----~~~~~~~-~~~~~L 165 (201)
T 1nkr_A 94 PSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRS-SYD--MYHLSREGEAHERRLP----AGPKVNG-TFQADF 165 (201)
T ss_dssp CCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESS-CCS--EEEEEETTCSSCEEEE----CEEEETT-EEEEEE
T ss_pred CCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCC-CCc--eEEEEECCcccCcccc----cccccCC-ceEEEE
Confidence 345567777653 23332222346889999999999864 233 4899999876532110 0111111 123459
Q ss_pred EEeeeeecCCEEEEEEcccC
Q psy13371 153 LIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|.+++ |+|.|+|.|.+.
T Consensus 166 ~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 166 PLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp EEEECC--SCEEEEEEEEET
T ss_pred EeCCcC--CCeeEEEEEEcC
Confidence 999888 999999999865
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.5e-19 Score=122.53 Aligned_cols=167 Identities=20% Similarity=0.249 Sum_probs=103.0
Q ss_pred CeeEeeeCCCCCc---eEEEEeeCcceeeeec-ce------eeecCCceEEEe-----eCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGLLPT---RVSWIRHRDIHILTVG-SY------TYTSDQRFSAIH-----RREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~p~~---~v~W~~~~~~~~~~~~-~~------~~~~~~r~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.+.+.+.+ .|.|+|+++....... .. ......|..... ....++++|+|.+++.+|+|.|
T Consensus 19 v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 98 (225)
T 4fmk_A 19 VELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRVEDEGNY 98 (225)
T ss_dssp EEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCCGGGCEEE
T ss_pred EEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCCHHHCcce
Confidence 3699999988765 4899997753322111 00 001123333321 1233567899999999999999
Q ss_pred EEEecCCC--ceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEee
Q psy13371 66 ECQLSTQP--VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143 (212)
Q Consensus 66 ~C~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 143 (212)
+|.+.+.. .......+.+..++.....+.......++...+.|.+.+.+ |...+.|.+++....... ......
T Consensus 99 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-P~~~~~w~~~~~~~~~~~----~~~~~~ 173 (225)
T 4fmk_A 99 TCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGR-PPARITWISSLGGEAKDT----QEPGIQ 173 (225)
T ss_dssp EEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEB-SCCEEEEECSSCCEEEEE----EEECSS
T ss_pred EEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCC-CCCEEEEEECCccccCCc----ceEEec
Confidence 99998742 23333445555555444444445566777888888776542 333488988776542211 111112
Q ss_pred cCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 144 KGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 144 ~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++.. ..+.|.|.++..+|.|.|+|.|.|+
T Consensus 174 ~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~ 203 (225)
T 4fmk_A 174 AGTVTIISRYSLVPVGRADGVKVTCRVEHE 203 (225)
T ss_dssp TTCEEEEEEEEECCCGGGTTCEEEEEEECT
T ss_pred CCCEEEEEEEEEeeCCHHHCCEEEEEEEcC
Confidence 2221 2356999999999999999999997
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=124.21 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=101.6
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-ceeEE
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFF 78 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~ 78 (212)
+.|.|.+ .+.|.+.+.|++++. .+... .....|.|.+++.+|+|.|+|.+.+.. ..+..
T Consensus 100 v~l~C~~~~~~p~~~v~W~~~g~--~~~~~-----------------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~ 160 (262)
T 3rjd_A 100 LALRCHAWKDKLVYNVLYYRNGK--AFKFF-----------------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAG 160 (262)
T ss_dssp EEEEEEEGGGCCCEEEEEEETTE--EEEEE-----------------EECCCEEESSCCGGGCEEEEEEEESSSEEEEEC
T ss_pred EEEEEEccCCCCCceEEEEECCc--ccccc-----------------CCCCeEEEEECChhhCEEEEEEEeCCCCccccc
Confidence 3689999 677889999999773 22111 012368999999999999999999864 44555
Q ss_pred EEEEEecc--cceeeCCCceeeeCCCcEEEEeEEeeCCC-CCc--eEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEE
Q psy13371 79 VNLNVVVP--TAEILGSPDLHVDEGSTINLTCSIKYSPE-PPA--YIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 79 ~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (212)
+.|.|... ++.+.......+.+|+.+.|.|.+.+.|. |.. .+.|++++..+..... . ..|.
T Consensus 161 ~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~~---------~-----~~L~ 226 (262)
T 3rjd_A 161 ISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT---------S-----SEYQ 226 (262)
T ss_dssp EEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEEES---------C-----CEEE
T ss_pred eEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecccCC---------C-----ceEE
Confidence 67777652 34444444566889999999999998765 432 3678888887742211 1 2499
Q ss_pred EeeeeecCCEEEEEEcccCC
Q psy13371 154 IQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~~ 173 (212)
|.++..+|+|.|+|.|.|..
T Consensus 227 i~~v~~~d~G~Y~C~a~n~~ 246 (262)
T 3rjd_A 227 ILTARREDSGLYWCEAATED 246 (262)
T ss_dssp ESSCCGGGCEEEEEEEEETT
T ss_pred EEEechhhCeEEEEEEEccc
Confidence 99999999999999999973
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-18 Score=123.27 Aligned_cols=135 Identities=19% Similarity=0.277 Sum_probs=100.6
Q ss_pred CeeEeeeCCCCCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEE
Q psy13371 1 MLHQRKLKGLLPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 79 (212)
+.|.|.+.+.|.+ .+.|+|++. .+.. ....|.|.+++.+|+|.|+|.+.+.. .+..+
T Consensus 19 v~l~C~~~~~~~~~~~~W~~~g~--~~~~-------------------~~~~l~i~~~~~~d~G~Y~C~~~~~~-~s~~~ 76 (262)
T 3rjd_A 19 VTLHCEVLHLPGSSSTQWFLNGT--ATQT-------------------STPSYRITSASVNDSGEYRCQRGLSG-RSDPI 76 (262)
T ss_dssp EEEEEECSSCCCTTCEEEEETTE--ECSC-------------------CSSEEEESSCCGGGCEEEEEEESSSC-CCCCE
T ss_pred EEEEEECCCCCCCceEEEEECCE--Eeec-------------------cCCeEEEecCCcccCeEEEEEEecCC-ccccE
Confidence 4689999999887 999999762 2211 12378999999999999999998753 34456
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..++. ...+....+.+|+.+.|.|.+... .|...+.|++++..+.... .. ..|.|.++..
T Consensus 77 ~l~v~~~~~-~~~~~~~~~~~g~~v~l~C~~~~~-~p~~~v~W~~~g~~~~~~~---------~~-----~~l~i~~~~~ 140 (262)
T 3rjd_A 77 QLEIHRGWL-LLQVSSRVFTEGEPLALRCHAWKD-KLVYNVLYYRNGKAFKFFH---------WN-----SNLTILKTNI 140 (262)
T ss_dssp EEEEECSSE-EEEESCSEEETTSCEEEEEEEGGG-CCCEEEEEEETTEEEEEEE---------EC-----CCEEESSCCG
T ss_pred EEEEeccce-EecCCCeEEecCCeEEEEEEccCC-CCCceEEEEECCccccccC---------CC-----CeEEEEECCh
Confidence 777766553 334445678899999999999433 2444599999998774221 11 1399999999
Q ss_pred cCCEEEEEEcccCC
Q psy13371 160 KDSGKYSCSPSNAD 173 (212)
Q Consensus 160 ~d~g~y~C~~~n~~ 173 (212)
+|.|.|+|.+.|..
T Consensus 141 ~d~G~Y~C~~~n~~ 154 (262)
T 3rjd_A 141 SHNGTYHCSGMGKH 154 (262)
T ss_dssp GGCEEEEEEEESSS
T ss_pred hhCEEEEEEEeCCC
Confidence 99999999999873
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=125.32 Aligned_cols=170 Identities=12% Similarity=0.156 Sum_probs=104.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----e-cceeeec----CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----V-GSYTYTS----DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~-~~~~~~~----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+ +.+.|.|+|........ . ....... ++|+.+.. ...++.+|+|.+++.+|+|.|.|.+.+
T Consensus 45 v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~~~~ 122 (270)
T 3qib_D 45 AKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAEC-PSNSPCSLEIQSSEAGDSALYLCASSL 122 (270)
T ss_dssp EEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEEC-CTTSCEEEEESSCCGGGCEEEEEEEES
T ss_pred EEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEe-CCCcEEEEEECCCCHhHCeEEEEEEec
Confidence 469999976 77899999854321111 0 1111111 11787764 345688999999999999999999986
Q ss_pred CC-----ceeEEEEEEEec------ccc-eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCcee
Q psy13371 72 QP-----VRSFFVNLNVVV------PTA-EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139 (212)
Q Consensus 72 ~~-----~~~~~~~l~v~~------~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~ 139 (212)
.. .......|.|.. +|. .+..+....+..|+.++|.|.+.+.+++...+.|+++|..+..........
T Consensus 123 ~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~ 202 (270)
T 3qib_D 123 NWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQP 202 (270)
T ss_dssp CTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSC
T ss_pred CCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCccccccc
Confidence 31 222344666765 222 222333334556999999999988443333689999998873210000000
Q ss_pred E----EeecCce-EEEEEEEeeeeecC-CEEEEEEcccC
Q psy13371 140 V----ITEKGEV-TTSYLLIQQAELKD-SGKYSCSPSNA 172 (212)
Q Consensus 140 ~----~~~~~~~-~~~~l~i~~~~~~d-~g~y~C~~~n~ 172 (212)
. ...++.. ..+.|.|.....+| .|.|+|.+.|+
T Consensus 203 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~ 241 (270)
T 3qib_D 203 LKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFY 241 (270)
T ss_dssp EESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEEC
T ss_pred ccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEec
Confidence 0 0012222 23557777777777 99999999986
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=119.74 Aligned_cols=150 Identities=14% Similarity=0.229 Sum_probs=95.3
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeee-cce-----eee----cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTV-GSY-----TYT----SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~-~~~-----~~~----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+ .+.+.|.|+|++. .+... ... ... ..+|+.+. .+++|+|.+++.+|+|.|.|.+
T Consensus 16 v~L~C~~~~~~~~~~v~W~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~ 89 (193)
T 2if7_A 16 VTLPLEFPAGEKVNFITWLFNET-SLAFIVPHETKSPEIHVTNPKQGKRLNFT-----QSYSLQLSNLKMEDTGSYRAQI 89 (193)
T ss_dssp EEECCCCCCCSCCCEEEEEETTE-EEEEEECCSSSCCEEEECCHHHHTTEEEC-----TTCCEEECSCCGGGCEEEEEEE
T ss_pred EEEeccCCCcccccEEEEEECCE-EEEEEecccCCCCceeecCccccccEEEC-----CCeEEEECCCCcccCceEEEEE
Confidence 368999986 4568999999752 22111 100 000 12466654 3568999999999999999999
Q ss_pred cCCC-ceeEEEEEEEecccc--eeeCCCceeeeCCC-cEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC
Q psy13371 70 STQP-VRSFFVNLNVVVPTA--EILGSPDLHVDEGS-TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145 (212)
Q Consensus 70 ~~~~-~~~~~~~l~v~~~~~--~~~~~~~~~~~~g~-~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 145 (212)
.+.. .....+.|.|..++. .+.... .....|. .++|.|.+.+.+ |.+.+.|++++..+.. . .
T Consensus 90 ~~~~~~~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~~~g~~-p~p~i~W~~~g~~l~~----~--------~ 155 (193)
T 2if7_A 90 STKTSAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCSVEDAD-DNVSFRWEALGNTLSS----Q--------P 155 (193)
T ss_dssp ECSSCEEEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEEEESCC-TTCEEEEEETTEEEES----S--------S
T ss_pred EecCCCeEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEEEecCC-CceEEEEEeCCEEcCC----C--------C
Confidence 8863 334566777765432 222222 1233455 799999998753 3335999999876521 0 1
Q ss_pred ceEEEEEEEeeeeec-CCEEEEEEcccCCee
Q psy13371 146 EVTTSYLLIQQAELK-DSGKYSCSPSNADVA 175 (212)
Q Consensus 146 ~~~~~~l~i~~~~~~-d~g~y~C~~~n~~~~ 175 (212)
.|.|.....+ |.|.|+|.|.|..+.
T Consensus 156 -----~l~i~~~~~~~d~G~Y~C~a~N~~g~ 181 (193)
T 2if7_A 156 -----NLTVSWDPRISSEQDYTCIAENAVSN 181 (193)
T ss_dssp -----EEEEEECTTTCSCCEEEEEEEETTEE
T ss_pred -----eEEEEeccCcCCCCcEEEEEECCCCc
Confidence 2666544444 899999999998544
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=121.57 Aligned_cols=169 Identities=15% Similarity=0.208 Sum_probs=106.3
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceee----eecc------eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHIL----TVGS------YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~----~~~~------~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+. +...+.|+|....... .... ......+|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 97 (230)
T 3n9g_H 18 TKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCA 97 (230)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChhhCEEEEEE
Confidence 4699999763 4678999986532211 1110 00112479999877777889999999999999999999
Q ss_pred ecCCC---------ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCC
Q psy13371 69 LSTQP---------VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR 135 (212)
Q Consensus 69 ~~~~~---------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~ 135 (212)
+.+.. .......|.|.. +|.....++...+..|+.+.|.|.+.+.+++...+.| ++..+.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~- 174 (230)
T 3n9g_H 98 RDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVH- 174 (230)
T ss_dssp EECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEE-
T ss_pred EccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CCcccCCCeE-
Confidence 98642 112334566642 2222222333345689999999999886543557899 5543311000
Q ss_pred CceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 136 GGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 136 ~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
........++.. ..+.|.|.....+| |.|+|.+.|+.
T Consensus 175 ~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~ 212 (230)
T 3n9g_H 175 TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 212 (230)
T ss_dssp ECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGG
T ss_pred eCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECC
Confidence 000112222322 33568888888889 99999999983
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=133.35 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=101.9
Q ss_pred CeeEeeeCC-CCCc-eEEEEeeCcceeeeec-ce----eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKG-LLPT-RVSWIRHRDIHILTVG-SY----TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~-~~----~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.+ .|.+ .|.|+|++. .+... .. ....++++.. ...|.|.++..+|+|.|+|.+.+..
T Consensus 134 ~~l~C~~~g~~p~~~~v~W~k~g~--~~~~~~~~~~~~~~~~~~~~~~-------~~~L~i~~~~~~d~G~Y~C~a~n~~ 204 (438)
T 1qgc_4 134 ASVVCFLNNFYPKDINVKWKIDGS--ERQNGVLNSWTDQDSKDSTYSM-------SSTLTLTKDEYERHNSYTCEATHKT 204 (438)
T ss_dssp EEEEEEEEEEBSSCEEEEEEETTE--EECTTEEEEEECCCTTTCCEEE-------EEEEEEEHHHHHTCCEEEEEEEETT
T ss_pred eEEEEEEccccCCCcEEEEEECCE--EcCCCceeccccccCCCCcEEE-------EEEEEEeCcccCCCCeEEEEEEecc
Confidence 368999988 6777 999999763 22211 00 0011223332 2379999999999999999999863
Q ss_pred ceeEEEEEEEec--ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEee---C----------CCC
Q psy13371 74 VRSFFVNLNVVV--PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISYD---S----------SRG 136 (212)
Q Consensus 74 ~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~~---~----------~~~ 136 (212)
.. ..+.+.+.. ++..+..+....+.+|+.+.|.|.+.+.|.+...+.|+++ +..+... . ...
T Consensus 205 ~~-~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~ 283 (438)
T 1qgc_4 205 ST-SPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVK 283 (438)
T ss_dssp CS-SCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGT
T ss_pred cC-CceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccC
Confidence 22 122333332 2333444566778999999999999988733334999987 5433210 0 011
Q ss_pred ceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 137 GVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 137 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
.+.....++......|.|.++..+|+|.|+|.|.|
T Consensus 284 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 318 (438)
T 1qgc_4 284 GRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRRE 318 (438)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECC
T ss_pred CcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEc
Confidence 22222222212234699999999999999999998
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=123.56 Aligned_cols=169 Identities=15% Similarity=0.197 Sum_probs=105.7
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcceeee----ec--------ceee---ecCCceEEEeeCCCCeEEEEEcccCCCC
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIHILT----VG--------SYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRD 61 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~~~~----~~--------~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d 61 (212)
+.|.|.+.+.+ ...+.|+|........ .. .... ...+|+.+..+...+..+|+|.+++.+|
T Consensus 18 v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 97 (239)
T 3tv3_H 18 LSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKLNSVTAAD 97 (239)
T ss_dssp EEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred EEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEEECCCChhh
Confidence 46999998865 4599999965322111 01 0001 1247999887666778999999999999
Q ss_pred CEEEEEEecCCC--------------ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEE
Q psy13371 62 AGVYECQLSTQP--------------VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY 123 (212)
Q Consensus 62 ~G~Y~C~~~~~~--------------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~ 123 (212)
+|.|.|.+.+.. .......|.|.. +|.....++...+..|+.+.|.|.+.+.+++...+.|.
T Consensus 98 sG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~ 177 (239)
T 3tv3_H 98 TATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN 177 (239)
T ss_dssp CEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBSSCCEEEEG
T ss_pred CEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEeCCCeEEEEE
Confidence 999999987531 011223566642 22222223334456799999999999865445568899
Q ss_pred EcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 124 HHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+++..+...... .....++.. ..+.|.|.....+| |.|+|.+.|+.
T Consensus 178 ~~g~~~~~~~~~---~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~ 224 (239)
T 3tv3_H 178 SGALTSGVHTFP---AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 224 (239)
T ss_dssp GGTBCTTEEECC---CEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGG
T ss_pred ECCccCceEecC---ceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECC
Confidence 888643111110 112222322 23568888877788 99999999984
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=125.46 Aligned_cols=171 Identities=13% Similarity=0.147 Sum_probs=105.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eeecc---eee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTVGS---YTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~~~---~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+.+.+.+.+.|+|.+.... ..... ... ...+|+.+..+ ..++.+|+|.+++.+|+|.|+|.+.
T Consensus 42 v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~ 120 (279)
T 2wbj_D 42 VKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLSTLTVTSAHPEDSSFYICSAR 120 (279)
T ss_dssp EEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC-SSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC-CCCEEEEEEccCCccCCEEEEEEEc
Confidence 3689999988999999999752111 11000 000 12478888753 4578899999999999999999998
Q ss_pred CCC-------ceeEEEEEEEecc------ccee-eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCC
Q psy13371 71 TQP-------VRSFFVNLNVVVP------TAEI-LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRG 136 (212)
Q Consensus 71 ~~~-------~~~~~~~l~v~~~------~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~ 136 (212)
+.. .......|.|... |... ..+....+.+|+.++|.|.+.+.+++.+.+.|+++++.+.......
T Consensus 121 ~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~ 200 (279)
T 2wbj_D 121 DLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTD 200 (279)
T ss_dssp ETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECCTTEEEC
T ss_pred ccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccc
Confidence 721 1123356777642 2121 2233333457899999999998744335699999998763210000
Q ss_pred ceeEE----eecCc-eEEEEEEEeeeeec-CCEEEEEEcccC
Q psy13371 137 GVSVI----TEKGE-VTTSYLLIQQAELK-DSGKYSCSPSNA 172 (212)
Q Consensus 137 ~~~~~----~~~~~-~~~~~l~i~~~~~~-d~g~y~C~~~n~ 172 (212)
..... ..++. ...+.|.|...... +.|.|+|.+.|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~ 242 (279)
T 2wbj_D 201 PQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY 242 (279)
T ss_dssp SSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEEC
T ss_pred cccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeC
Confidence 00000 01222 22345777666554 467899999987
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=132.00 Aligned_cols=161 Identities=12% Similarity=0.163 Sum_probs=97.8
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCcee--EEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRS--FFV 79 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~ 79 (212)
.|.|.+.|.|.|.|.|+|++. ....... .....+.. .... ++.+|+|.|+|.+.|..... ..+
T Consensus 158 ~L~C~a~G~P~P~i~W~k~~~--~~~~~~~----~~~~~~~~----~~~~-----l~~~d~G~Y~C~A~N~~G~~~~~~~ 222 (423)
T 3qs7_E 158 ALVCISESVPEPIVEWVLCDS--QGESCKE----ESPAVVKK----EEKV-----LHELFGTDIRCCARNELGRECTRLF 222 (423)
T ss_dssp CEEEEEEESSCCEEEEEEC-------------------CEEE----CCSE-----ECCCCSSCEEEEEECSSCEEEEECE
T ss_pred EEEEEEeeecCCeEEEEECCC--CCccccc----cccccccc----cceE-----EecccCeEEEEEEEcCCCCcceeeE
Confidence 589999999999999999774 1110000 00000000 0001 15789999999999863222 234
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEEeeCCCCceeEEeecC-ceEEEEEEEeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG-EVTTSYLLIQQA 157 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~ 157 (212)
.|.|..++. ..+....+.+|+.+.|.|.+.+ .|.|. +.|++++..+...... ......... ......|.|.++
T Consensus 223 ~l~V~~~p~--~~~~~~~v~~G~~v~L~C~~~g~~p~p~--i~W~k~g~~l~~~~~~-~~~~~~~~~~~~~~~~L~I~~v 297 (423)
T 3qs7_E 223 TIDLNQTPQ--TTLPQLFLKVGEPLWIRCKAVHVNHGFG--LTWELENKALEEGNYF-EMSTYSTNRTMIRILFAFVSSV 297 (423)
T ss_dssp EEESSSCCC--SSTTEEEEETTSCEEEEEEEEESSSCCC--EEEEESSSBCCGGGEE-EEEEEETTTEEEEEEEEEESSC
T ss_pred EEEEecCCc--cCCCceEEeCCCeEEEEEEEEcCCCCcE--EEEEECCEEcccccee-ecccccCCceeEEEEEEEEeec
Confidence 555544432 2445678899999999999998 44466 9999999866211000 000000010 112346999999
Q ss_pred eecCCEEEEEEcccCCeeEEEEEEe
Q psy13371 158 ELKDSGKYSCSPSNADVASVYVHVL 182 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~~~~~~~~~v~ 182 (212)
..+|+|.|+|.|.|.....+.+.|.
T Consensus 298 ~~~D~G~Y~C~A~N~~~~~~~L~V~ 322 (423)
T 3qs7_E 298 ARNDTGYYTCSSSKHPSQSALVTIV 322 (423)
T ss_dssp CTTTCEEEEEEETTEEEEEEEEEEE
T ss_pred CHHHCEEEEEEEecCCCceEEEEEE
Confidence 9999999999999984455555554
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-20 Score=137.19 Aligned_cols=161 Identities=17% Similarity=0.288 Sum_probs=57.1
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEE
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 79 (212)
+.|.|.+.+. |.+.+.|+|++. .+.. +.|+.. .+..|.|.+++.+|+|.|+|.+.+.+..+..+
T Consensus 26 v~l~C~~~~~~p~~~v~W~k~g~-~~~~--------~~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~~ 90 (334)
T 1ry7_B 26 VELSCPPPGGGPMGPTVWVKDGT-GLVP--------SERVLV------GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHF 90 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeeCCCCCCCcceEEEECCe-eCCC--------cccEEe------ccceEEEeecccccCEEEEEEEEeCCeEEEEE
Confidence 4689999987 678999999873 2221 223333 24589999999999999999998864344555
Q ss_pred EEEEeccc---------------------ceeeCC-----CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeC
Q psy13371 80 NLNVVVPT---------------------AEILGS-----PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS 133 (212)
Q Consensus 80 ~l~v~~~~---------------------~~~~~~-----~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~ 133 (212)
.|.|...+ +.+..+ ....+.+|+.+.|.|.+.+.|.|. +.|++++..+....
T Consensus 91 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~--v~W~~~~~~~~~~~ 168 (334)
T 1ry7_B 91 SVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS--ISWLKNGREFRGEH 168 (334)
T ss_dssp ----------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCE--EECCBTTBCCCTTS
T ss_pred EEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCe--EEEEECCEECcccc
Confidence 56665432 111111 235678899999999998876665 99999988764221
Q ss_pred CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC---eeEEEEEEee
Q psy13371 134 SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD---VASVYVHVLN 183 (212)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~---~~~~~~~v~~ 183 (212)
..... ...... ..|.|.++..+|+|.|+|.+.|.. .....+.|..
T Consensus 169 ~~~~~-~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 216 (334)
T 1ry7_B 169 RIGGI-KLRHQQ----WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE 216 (334)
T ss_dssp STTCC-CCCTTT----TEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEEC
T ss_pred cccce-ecccce----EEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEec
Confidence 11100 111111 249999999999999999999973 3344455543
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-19 Score=121.89 Aligned_cols=162 Identities=12% Similarity=0.143 Sum_probs=97.6
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcceeeeecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIHILTVGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV 74 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 74 (212)
+.|.|.+.|.+ .+.|.|+|++. .+..... .....++++.. ...|+|.+++.+|+|.|+|.+.+...
T Consensus 21 v~L~C~~~g~~~~p~~~~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~~~~~ 92 (207)
T 2vol_A 21 PKVTCVVVDISKDDPEVQFSWFVDDV-EVHTAQTKPREEQFNSTFRS-------VSELPIMHQDWLNGKEFKCRVNSAAF 92 (207)
T ss_dssp CEEEEEEEEECTTCCCCEEEEEETTE-EECCCEEECCCEETTTEEEE-------EEEEECCHHHHHTTCCEEEEEECTTC
T ss_pred eEEEEEEeCcccCCCceEEEEEECCc-cccccccCCCcCcCCCcEEE-------EEEEEEehhHcCCCCEEEEEEEccCC
Confidence 47999999874 34999999883 2221100 00111233322 23799999999999999999998632
Q ss_pred -e--eEEEEE--EEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-E
Q psy13371 75 -R--SFFVNL--NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-T 148 (212)
Q Consensus 75 -~--~~~~~l--~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~ 148 (212)
. ...+.+ .+..+|.....+.......|+.+.|.|.+.+.+++.+.+.|++++..+..... .......++.. .
T Consensus 93 ~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~--~~~~~~~~g~~~~ 170 (207)
T 2vol_A 93 PAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKN--TQPIMDTDGSYFV 170 (207)
T ss_dssp SSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEE--CCCEECTTSCEEE
T ss_pred CCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCccc--CCceECCCCCEEE
Confidence 1 222222 22334433333322223358999999999986544457999999987631110 11122233322 2
Q ss_pred EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.|.+.....+|.|.|+|.|.|+
T Consensus 171 ~s~l~i~~~~~~~~g~ytC~a~n~ 194 (207)
T 2vol_A 171 YSKLNVQKSNWEAGNTFTCSVLHE 194 (207)
T ss_dssp EEEEEEEHHHHSSCCEEEEEEECT
T ss_pred EEEEEECHHHcCCCCEEEEEEECC
Confidence 344666655567899999999997
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-18 Score=134.36 Aligned_cols=162 Identities=12% Similarity=0.122 Sum_probs=104.6
Q ss_pred CeeEeeeCCC-CCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGL-LPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.|. |.| .|.|+|++..............++++.. ...|.|.++..+| |.|+|.+.|. +....
T Consensus 237 ~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~-------~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~ 308 (523)
T 2rcj_C 237 AALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-------SSVVTVPSSSLGT-QTYICNVNHKPSNTKV 308 (523)
T ss_pred eEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEE-------EEEEEechhhcCC-ceEEEEEEeCCCCcce
Confidence 4689999997 877 8999998742111000011111223322 2379999999999 9999999986 33344
Q ss_pred EEEEEEecccce-eeCCCcee-eeCCCcEEEEeEEeeCCCC--CceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEE
Q psy13371 78 FVNLNVVVPTAE-ILGSPDLH-VDEGSTINLTCSIKYSPEP--PAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYL 152 (212)
Q Consensus 78 ~~~l~v~~~~~~-~~~~~~~~-~~~g~~~~l~C~~~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 152 (212)
...+.+...|.. +..+.... +.+|+.+.|.|.+.+.+.+ ...+.|++++..+...... .......+. ...+.|
T Consensus 309 ~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~--~~~~~~~g~~~~~s~L 386 (523)
T 2rcj_C 309 DKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTK--PREQQYNSTYRVVSVL 386 (523)
T ss_pred EEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccC--CceecCCCcEEEEEEE
Confidence 455555444433 33333333 7889999999999886532 3569999999887432211 111122222 234568
Q ss_pred EEeeeeecCCEEEEEEcccC
Q psy13371 153 LIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|.++..+|.|.|+|.|.|.
T Consensus 387 ~i~~~~~~d~G~Y~C~a~n~ 406 (523)
T 2rcj_C 387 TVLHQNWLDGKEYKCKVSNK 406 (523)
T ss_pred EECHHHhcCCCeEEEEEeCC
Confidence 89889999999999999986
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-18 Score=115.90 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=95.8
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecc---e-eeecC--CceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGS---Y-TYTSD--QRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~---~-~~~~~--~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.+ .+.+.|.|+|.+...+..... . .+..+ +|+.+. ..+++|+|.+++.+|+|.|.|.+.+..
T Consensus 17 vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~----~~~~sL~I~~v~~~D~G~Y~C~v~~~~ 92 (180)
T 2dru_A 17 VTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD----KTNGALRIYNVSKEDRGDYYMRMLHET 92 (180)
T ss_dssp EEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC----TTTCCEEECSCCGGGCEEEEEEEESSS
T ss_pred EEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe----CCCccEEEcCCCHHHCeEEEEEEEcCC
Confidence 368999865 347899999953323322111 1 11112 566662 245689999999999999999987755
Q ss_pred ceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEE
Q psy13371 74 VRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 74 ~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (212)
.....+.|.|..++.. +... ..++.+.|.|.+...|.|. +.|++++..+... .+ .+|.
T Consensus 93 ~~~~~~~L~V~~~~~~----P~i~-~~~~~v~L~C~~~~gp~p~--i~W~~~~~~l~~~-----------~~----~~l~ 150 (180)
T 2dru_A 93 EDQWKITMEVYEMVSK----PMIY-WECSNATLTCEVLEGTDVE--LKLYQGKEHLRSL-----------RQ----KTMS 150 (180)
T ss_dssp EEEEEEEEEEECCCCC----CEEE-EEGGGTEEEEECSSCTTCE--EEEEETTEEEEEE-----------SS----SEEE
T ss_pred eEEEEEEEEEECCCCC----CEEE-ecCCCEEEEEEeCCCCCCE--EEEEECCeECcCC-----------CC----CEEE
Confidence 4456677777654211 1112 2346799999994445555 9999999877411 11 1255
Q ss_pred EeeeeecCCEEEEEEcccCCeeE
Q psy13371 154 IQQAELKDSGKYSCSPSNADVAS 176 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~~~~~ 176 (212)
+.. .+|+|.|+|.|.|+....
T Consensus 151 ~~~--~~d~g~Y~C~a~N~~~~~ 171 (180)
T 2dru_A 151 YQW--TNLRAPFKCKAVNRVSQE 171 (180)
T ss_dssp EEC--SCCSSCEEEEEEETTEEE
T ss_pred EEE--hhcCccEEEEEecCcCcc
Confidence 532 789999999999985543
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=116.12 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=93.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeee----cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCcee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYT----SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 76 (212)
+.|.|.+.+ |.+.|.|+|++. .+......... ..+|+.+. ..+++|+|.+++.+|+|.|.|.+.+... .
T Consensus 13 VtL~c~~~~-~~~~i~W~~~~~-~i~~~~~~~~~~~~~~~~R~~~~----~~~~sL~I~~v~~~DsG~Y~C~~~n~~~-~ 85 (171)
T 1ccz_A 13 VTFHVPSNV-PLKEVLWKKQKD-KVAELENSEFRAFSSFKNRVYLD----TVSGSLTIYNLTSSDEDEYEMESPNITD-T 85 (171)
T ss_dssp EEECCCCSS-CCSCEEEEETTE-EEEEEETTEEEECGGGTTSEEEC----TTTCCEEECSCCGGGCEEEEEECTTCCS-C
T ss_pred EEEcCCCCC-CcceEEEEeCCc-EEEEEcCCCcccccccCCcEEEe----CCCCeEEECCCChhhCceEEEEEeCCCC-c
Confidence 468999854 889999999774 22221110010 12455542 2446899999999999999999987643 6
Q ss_pred EEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEee
Q psy13371 77 FFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 77 ~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
..+.|.|..++.. +...... ....|.|.+.+.|.|. +.|++++..+...... .+.+.
T Consensus 86 ~~~~L~V~~~~~~----p~i~~~~-~~~~L~C~~~~~p~p~--i~W~~~~~~l~~~~~~---------------~l~~~- 142 (171)
T 1ccz_A 86 MKFFLYVLEMVSK----PMIYWEC-SNATLTCEVLEGTDVE--LKLYQGKEHLRSLRQK---------------TMSYQ- 142 (171)
T ss_dssp EEEEEEEECCCCC----CEEEEET-TTTEEEEECSSCSSCE--EEEEETTEEEEEESSS---------------EEEEE-
T ss_pred EEEEEEEECcCCC----CEEEEec-CCcEEEEEeCCCCCcE--EEEEECCEECcCCcce---------------EEEEe-
Confidence 6778888765321 1111111 1138999998776555 9999999877422110 13333
Q ss_pred eeecCCEEEEEEcccCCeeE
Q psy13371 157 AELKDSGKYSCSPSNADVAS 176 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~~~~~ 176 (212)
..+|.|.|+|.|.|+.+..
T Consensus 143 -~~~~~g~Y~C~a~N~~~~~ 161 (171)
T 1ccz_A 143 -WTNLRAPFKCKAVNRVSQE 161 (171)
T ss_dssp -CSCCSSCEEEEEEETTEEE
T ss_pred -ccCCCceEEEEEEcccCcc
Confidence 3678899999999985443
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=122.98 Aligned_cols=167 Identities=14% Similarity=0.160 Sum_probs=106.0
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcce----eeeec-c-eee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIH----ILTVG-S-YTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~----~~~~~-~-~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+. +.+.+.|+|..... +.... . ... ..++|+.+..+...++.+|+|.+++.+|+|.|.|.+
T Consensus 19 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 98 (230)
T 1ypz_F 19 AQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSY 98 (230)
T ss_dssp EEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEE
T ss_pred EEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChhhCEEEEEEE
Confidence 3699999886 67899999975321 11111 1 001 135799988655557889999999999999999999
Q ss_pred cCC---C--ceeEEEEEEEec---------cc-ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEE-cCeEEEeeC
Q psy13371 70 STQ---P--VRSFFVNLNVVV---------PT-AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH-HDEVISYDS 133 (212)
Q Consensus 70 ~~~---~--~~~~~~~l~v~~---------~~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~-~~~~~~~~~ 133 (212)
.+. . .......|.|.. ++ +.+..+....+..|+.++|.|.+.+..+..+.+.|++ ++..+....
T Consensus 99 ~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~ 178 (230)
T 1ypz_F 99 GEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQ 178 (230)
T ss_dssp CCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCE
T ss_pred ECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccc
Confidence 874 1 122345677762 12 2233333344556889999999987632234699999 776553111
Q ss_pred CCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 134 SRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 134 ~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
. . . ....++.. ..+.|.|.+... + |.|+|.+.|.
T Consensus 179 ~-~-~-~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~ 213 (230)
T 1ypz_F 179 E-G-D-TLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHE 213 (230)
T ss_dssp E-C-C-CEEETTEEEEEEEEEECGGGT-T-SCEEEEEECS
T ss_pred c-c-e-eecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEEC
Confidence 1 1 1 11223322 235688876664 4 8999999987
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=126.06 Aligned_cols=164 Identities=15% Similarity=0.174 Sum_probs=106.0
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeec----c--eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVG----S--YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~----~--~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+. +.+.|.|+|.+........ . ... ...+|+... +...++++|+|.+++.+|+|.|+|.+.+
T Consensus 17 v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~a~n 95 (308)
T 4fom_A 17 VSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFK-NYSLNDATITLHNIGFSDSGKYICKAVT 95 (308)
T ss_dssp EEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEES-CCSSSBCCEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEee-ccCCCceEEEEccCCHHHCEEEEEEEee
Confidence 4689999765 5568999997642221110 0 000 113455554 2344667899999999999999999987
Q ss_pred CC--ceeEEEEEEEecccc--eeeCCCceeeeCCCcEEEEeEEe-eCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc
Q psy13371 72 QP--VRSFFVNLNVVVPTA--EILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE 146 (212)
Q Consensus 72 ~~--~~~~~~~l~v~~~~~--~~~~~~~~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 146 (212)
.. ..+....+.+...+. ....+.......|+.+.|.|.+. +.|.|. +.|++++..+.... ........
T Consensus 96 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~--i~W~~~~~~~~~~~-----~~~~~~~~ 168 (308)
T 4fom_A 96 FPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAH--IDWEGDLGEMESTT-----TSFPNETA 168 (308)
T ss_dssp TTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCE--EEECCCSSBCCEEE-----EECTTSCE
T ss_pred CCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCce--EEEEECCccccccc-----ceeeeecc
Confidence 52 344455566655442 33344555566788999999864 565555 99999987663211 01111112
Q ss_pred eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 147 VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+.|.|.....+|.|.|+|.|.|.
T Consensus 169 ~~~s~l~i~~~~~~d~g~Y~C~a~n~ 194 (308)
T 4fom_A 169 TIISQYKLFPTRFARGRRITCVVKHP 194 (308)
T ss_dssp EEEEEEEECCCGGGTTCEEEEEEECT
T ss_pred cccccceEEeeeecCCccEEEEEEcc
Confidence 23356999999999999999999986
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=142.03 Aligned_cols=145 Identities=23% Similarity=0.326 Sum_probs=109.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++....... ....+.|+... ..+|.|.+++.+|+|.|+|.+.+. +..+..+
T Consensus 266 v~L~C~~~g~p~p~v~W~k~~~~~~~~~---~~~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 336 (816)
T 3dmk_A 266 MALLCPAQGYPVPVFRWYKFIEGTTRKQ---AVVLNDRVKQV------SGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 336 (816)
T ss_dssp EEECCCCBCSSCCEEEEEEECTTSSCEE---ECCCSSSEEEE------TTEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEeeecCCCeEEEEeCCCCCccCc---ceecCCceEec------cceEEECCCCHhHCEEEEEEEEcCCCceEEEE
Confidence 3689999999999999999653221110 01112333322 238999999999999999999986 4556667
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..++.....+....+.+|+.+.|.|.+.+.|.+. +.|++++..+... . ..|.|.++..
T Consensus 337 ~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~--v~W~k~g~~~~~~-----------~-----~~L~i~~v~~ 398 (816)
T 3dmk_A 337 VLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT--VSWMKDGKAIGHS-----------E-----SVLRIESVKK 398 (816)
T ss_dssp EEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCE--EEEEETTEECSCC-----------S-----SEEEESSCCG
T ss_pred EEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCE--EEEEECCEECCCC-----------C-----CEEEEcCCCH
Confidence 78887766666667778899999999999999887665 9999999876211 1 1399999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|+|.+.|.
T Consensus 399 ~d~G~Y~C~a~n~ 411 (816)
T 3dmk_A 399 EDKGMYQCFVRND 411 (816)
T ss_dssp GGCEEEEEEEECS
T ss_pred HHCEEEEEEEECC
Confidence 9999999999997
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-18 Score=120.41 Aligned_cols=170 Identities=12% Similarity=0.147 Sum_probs=103.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce-e---eee--cceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH-I---LTV--GSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~-~---~~~--~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+. .+.+.+.|+|.+... . ... ..... ...+|+.+..+ ..++.+|+|.+++.+|+|.|.|.+.+.
T Consensus 17 v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 94 (238)
T 1bec_A 17 VTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP-SQEQFSLILELATPSQTSVYFCASGGG 94 (238)
T ss_dssp EEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC-SSSEEEEEESSCCGGGCEEEEEEEESC
T ss_pred EEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec-CCCEEEEEEecCCcccCEEEEEEEecC
Confidence 36999995 468899999975321 1 110 00111 12478888642 356789999999999999999999875
Q ss_pred C----c--eeEEEEEEEec------ccce-eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCcee
Q psy13371 73 P----V--RSFFVNLNVVV------PTAE-ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS 139 (212)
Q Consensus 73 ~----~--~~~~~~l~v~~------~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~ 139 (212)
. . ......|.|.. +|.. +..+....+..|+.+.|.|.+.+.+++...+.|++++..+..........
T Consensus 95 ~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~ 174 (238)
T 1bec_A 95 RGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQA 174 (238)
T ss_dssp TTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSC
T ss_pred CCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCceecccce
Confidence 2 1 12334577765 2222 22333344567999999999998633334699999998773211000011
Q ss_pred EEeecCce-EEEEEEEeeeeecC-CEEEEEEcccC
Q psy13371 140 VITEKGEV-TTSYLLIQQAELKD-SGKYSCSPSNA 172 (212)
Q Consensus 140 ~~~~~~~~-~~~~l~i~~~~~~d-~g~y~C~~~n~ 172 (212)
....++.. ..+.|.|......| .|.|+|.+.|.
T Consensus 175 ~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~ 209 (238)
T 1bec_A 175 YKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFH 209 (238)
T ss_dssp EEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEEC
T ss_pred EeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcC
Confidence 11223321 22345554444444 67899999987
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-18 Score=133.25 Aligned_cols=154 Identities=20% Similarity=0.201 Sum_probs=106.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCE-EEEEEecCCC--ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQLSTQP--VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~--~~~~ 77 (212)
+.|.|.+.+.+.+.+.|++.++..+.. +.++... .+..|.|.+++.+|+| .|+|.+.+.. ..+.
T Consensus 132 v~l~C~~~~~~~~~v~W~~~~g~~l~~--------~~~~~~~-----~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~ 198 (524)
T 2ec8_A 132 TLVRCPLTDPEVTNYSLKGCQGKPLPK--------DLRFIPD-----PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSE 198 (524)
T ss_dssp EEECCCBSCCCCSCEEEECSSSCCCCS--------SCEEEEE-----TTTEEEEESCCGGGTTCEEEEEEC----CCCCC
T ss_pred EEEECcCCCCccceEEEEccCCcCcCC--------CCceeEC-----CCccEEEeccchhhCCceEEEEEEECCceEEEE
Confidence 368999999888999999855433321 2344443 2237999999999999 9999999853 2244
Q ss_pred EEEEEEe----cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEE--EeeCCCCceeEEeec-CceEEE
Q psy13371 78 FVNLNVV----VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI--SYDSSRGGVSVITEK-GEVTTS 150 (212)
Q Consensus 78 ~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~ 150 (212)
.+.|.|. .+|.....+....+.+|+.+.|.|.+.+.|.|. .+.|++++..+ ... .......+ .....+
T Consensus 199 ~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~-~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 273 (524)
T 2ec8_A 199 KFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSV-YSTWKRENSQTKLQEK----YNSWHHGDFNYERQA 273 (524)
T ss_dssp CEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTC-EEEEEETTCSCCCCEE----EEEEECSSSCEEEEE
T ss_pred EEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcE-EEEEEeCCCCCccccc----cccccccCCccceEE
Confidence 6777776 345555566677899999999999999875443 58999998762 111 01111111 112335
Q ss_pred EEEEeeeeecCCEEEEEEcccC
Q psy13371 151 YLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 151 ~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|.|.++..+|+|.|+|.|.|.
T Consensus 274 ~L~I~~~~~~D~G~Y~C~a~n~ 295 (524)
T 2ec8_A 274 TLTISSARVNDSGVFMCYANNT 295 (524)
T ss_dssp EEEESSCCTTTCEEEEEEEECS
T ss_pred EEEECCCCHHHCEEEEEEEEec
Confidence 6999999999999999999997
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-18 Score=125.83 Aligned_cols=164 Identities=16% Similarity=0.220 Sum_probs=107.3
Q ss_pred CeeEeeeCCC----CCceEEEEeeCcceeeeecc------eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL----LPTRVSWIRHRDIHILTVGS------YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~----p~~~v~W~~~~~~~~~~~~~------~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+. +.+.+.|+|++......... ... ...+|+.+. +....+.+|.|.+++.+|+|.|+|.
T Consensus 32 v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~ 110 (331)
T 3u83_A 32 VVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFL-RPSFTDGTIRLSRLELEDEGVYICE 110 (331)
T ss_dssp EEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEES-SCSSSBCCEEECSCCGGGCEEEEEE
T ss_pred EEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEec-ccCCCCceEEEcccCcccCcEEEEE
Confidence 4689999987 56689999965321111100 000 124677765 2445677899999999999999998
Q ss_pred ecC-C-CceeEEEEEEEeccccee--eCCCceeeeCC---CcEEEEeE-EeeCCCCCceEEEEEcCeEEEeeCCCCceeE
Q psy13371 69 LST-Q-PVRSFFVNLNVVVPTAEI--LGSPDLHVDEG---STINLTCS-IKYSPEPPAYIFWYHHDEVISYDSSRGGVSV 140 (212)
Q Consensus 69 ~~~-~-~~~~~~~~l~v~~~~~~~--~~~~~~~~~~g---~~~~l~C~-~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~ 140 (212)
+.+ . +.....+.|.|..+|... ..+....+.+| +.+.|.|. ..+.|.|. +.|++++...... ...
T Consensus 111 ~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~--i~W~~~~~~~~~~-----~~~ 183 (331)
T 3u83_A 111 FATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSV--VSWETRLKGEAEY-----QEI 183 (331)
T ss_dssp EEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCE--EEEEESSCCEEEE-----EEE
T ss_pred EEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCce--EEEEcCCCCcccc-----cee
Confidence 554 2 345667778887766442 34556677788 77999998 66776655 9999853221100 001
Q ss_pred EeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 141 ITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 141 ~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
....+.. ..+.|.|.++..+|.|.|+|.|.|.
T Consensus 184 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 216 (331)
T 3u83_A 184 RNPNGTVTVISRYRLVPSREAHQQSLACIVNYH 216 (331)
T ss_dssp ECTTSCEEEEEEEEECCCGGGTTCEEEEEEEET
T ss_pred ECCCCcEEEEEEEEEEeccccCCCEEEEEEecC
Confidence 1112211 2245888888999999999999997
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=134.70 Aligned_cols=161 Identities=11% Similarity=0.149 Sum_probs=101.2
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-ce-eEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VR-SFFV 79 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~-~~~~ 79 (212)
.|.|.+.|.|.|.|.|++++.. ... .. . ............+..+|+|.|+|.+.|.. .. ...+
T Consensus 158 ~L~C~a~G~P~P~i~W~~~~~~-~~~-~~----------~---~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~ 222 (527)
T 3qs9_E 158 ALVCISESVPEPIVEWVLCDSQ-GES-CK----------E---ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLF 222 (527)
T ss_dssp CEEEEEEESSCCEEEEEEC----------------------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECE
T ss_pred EEEEEEceecCCeEEEEECCCC-Ccc-cc----------c---cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEE
Confidence 5899999999999999987631 110 00 0 00011122233456899999999999863 22 2235
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEe-eCCCCCceEEEEEcCeEEEeeCCCCceeEEeec-CceEEEEEEEeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK-GEVTTSYLLIQQA 157 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~ 157 (212)
.|.|..++.. .+....+.+|+.+.|.|.+. +.|.|. +.|++++..+....... ....... .......|.|.++
T Consensus 223 ~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~--i~W~k~g~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~v 297 (527)
T 3qs9_E 223 TIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFG--LTWELENKALEEGNYFE-MSTYSTNRTMIRILFAFVSSV 297 (527)
T ss_dssp EEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCC--EEEECSSSCCCGGGEEE-EEEEETTTEEEEEEEEEESSC
T ss_pred EEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeE--EEEEECCEECCCCceee-eeeeccCcceeeEEEEEEccC
Confidence 5666555433 55677899999999999997 666666 99999987652110000 0000001 0112345999999
Q ss_pred eecCCEEEEEEcccCCeeEEEEEEe
Q psy13371 158 ELKDSGKYSCSPSNADVASVYVHVL 182 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~~~~~~~~~v~ 182 (212)
..+|+|.|+|.|.|.....+.+.|.
T Consensus 298 ~~~DsG~Y~C~a~N~~~~~~~L~V~ 322 (527)
T 3qs9_E 298 ARNDTGYYTCSSSKHPSQSALVTIV 322 (527)
T ss_dssp CGGGCEEEEEEETTEEEEEEEEEEC
T ss_pred CcccCeEEEEEEEeCCCceEEEEEE
Confidence 9999999999999984455555554
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=121.80 Aligned_cols=169 Identities=18% Similarity=0.225 Sum_probs=103.1
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeee-------cceee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTV-------GSYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~-------~~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+. +...+.|+|......... +.... ...+|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 17 v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 96 (248)
T 3u2s_H 17 LRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRVEDTATYFCV 96 (248)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCHHHCEEEEEE
Confidence 3699999863 467999998653221110 00000 12479999876667789999999999999999999
Q ss_pred ecCCC-----------------------ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEE
Q psy13371 69 LSTQP-----------------------VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIF 121 (212)
Q Consensus 69 ~~~~~-----------------------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~ 121 (212)
+.+.. .......|.|.. +|.....++...+..|+.+.|.|.+.+.+++...+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~ 176 (248)
T 3u2s_H 97 REAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS 176 (248)
T ss_dssp EEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEEEEEEBSSCCEEE
T ss_pred EeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEEeeEECCCeEEE
Confidence 87521 112234566652 222222233334557999999999988654355789
Q ss_pred EEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 122 WYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 122 W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
|.+++......... .....++.. ..+.|.|.....+| |.|+|.+.|+.
T Consensus 177 W~~~g~~~~~~~~~---~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~ 225 (248)
T 3u2s_H 177 WNSGALTSGVHTFP---AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 225 (248)
T ss_dssp EGGGTBCTTEEECC---CEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGG
T ss_pred EeECCccCceeecC---ceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECC
Confidence 99887632111110 112222322 23568888777778 99999999983
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=134.09 Aligned_cols=139 Identities=21% Similarity=0.360 Sum_probs=105.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~ 78 (212)
+.|.|.+.+ |.+.+.|++++. .+.. +.|+.+.. ....|.|.+++.+|+|.|+|.+.+.. ..+..
T Consensus 129 v~l~C~~~~-p~~~v~W~~~g~--~l~~-------~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~ 194 (642)
T 1e07_A 129 VAFTCEPET-QDATYLWWVNNQ--SLPV-------SPRLQLSN----GNRTLTLFNVTRNDTASYKCETQNPVSARRSDS 194 (642)
T ss_pred EEEEEECCC-CCeeEEEEECCe--ECCC-------CCceEEcC----CCCEEEEeCCCcccCeeEEEEEecCCCCcccce
Confidence 368999999 899999999773 2221 23444431 34589999999999999999999852 33456
Q ss_pred EEEEEeccc-ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 79 VNLNVVVPT-AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 79 ~~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+.|.|..+| .....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+.. . ..|.|.++
T Consensus 195 ~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~--i~W~~~g~~i~~------------~-----~~L~i~~~ 255 (642)
T 1e07_A 195 VILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQ--YSWFVNGTFQQS------------T-----QELFIPNI 255 (642)
T ss_pred EEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcE--EEEEECCeEccc------------C-----CceEEecc
Confidence 778887544 334445566788999999999997776665 999999887621 1 23999999
Q ss_pred eecCCEEEEEEcccC
Q psy13371 158 ELKDSGKYSCSPSNA 172 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~ 172 (212)
..+|+|.|+|.+.|.
T Consensus 256 ~~~d~G~Y~C~a~n~ 270 (642)
T 1e07_A 256 TVNNSGSYTCQAHNS 270 (642)
T ss_pred cccCCeEEEEEEEeC
Confidence 999999999999987
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-18 Score=132.63 Aligned_cols=169 Identities=14% Similarity=0.183 Sum_probs=109.4
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce----eeee---ccee-e--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH----ILTV---GSYT-Y--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~----~~~~---~~~~-~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|..... +... +... . ..++|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 97 (457)
T 1hzh_H 18 VKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCA 97 (457)
T ss_dssp EEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCcccCEEEEEE
Confidence 36899999886 7899999964311 1110 0000 0 12479988765556788999999999999999999
Q ss_pred ecCCC-------------ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEe
Q psy13371 69 LSTQP-------------VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISY 131 (212)
Q Consensus 69 ~~~~~-------------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~ 131 (212)
+.+.. .......|.|.. +|.....++...+.+|+.+.|.|.+.+.++....+.|++++..+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~ 177 (457)
T 1hzh_H 98 RVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV 177 (457)
T ss_dssp ECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTE
T ss_pred EecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccc
Confidence 98752 122445677754 2322333333456789999999999876222246999988854311
Q ss_pred eCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 132 DSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 132 ~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
. ........++. ...+.|.|.++..+| |.|+|.|.|..
T Consensus 178 ~---~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~ 216 (457)
T 1hzh_H 178 H---TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 216 (457)
T ss_dssp E---EEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGG
T ss_pred e---EcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCC
Confidence 0 00001112222 223569999999899 99999999973
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-18 Score=127.51 Aligned_cols=152 Identities=18% Similarity=0.257 Sum_probs=106.4
Q ss_pred CeeEeeeC-------CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-
Q psy13371 1 MLHQRKLK-------GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ- 72 (212)
Q Consensus 1 ~~l~C~~~-------~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~- 72 (212)
+.|.|.+. +.|.+.+.|+|++........ .+.|+... +..|.|.+++.+|+|.|+|.+.+.
T Consensus 36 v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~-----~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~~~n~~ 104 (339)
T 3o4o_C 36 VALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGE-----EETRMWAQ------DGALWLLPALQEDSGTYVCTTRNAS 104 (339)
T ss_dssp CEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCC-----SSSCEEEE------TTEEEESSBCTTCCEEEECCEEETT
T ss_pred EEEEeccccccccccCCCCceEEEEECCCCcccCcc-----ccccEEee------CCeEEECCCCcccCEEEEEEEECCc
Confidence 47999998 889999999998742212211 02344332 237999999999999999999985
Q ss_pred CceeEEEEEEEeccccee--eCCCceeeeCCCcEEEEeE-----EeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC
Q psy13371 73 PVRSFFVNLNVVVPTAEI--LGSPDLHVDEGSTINLTCS-----IKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145 (212)
Q Consensus 73 ~~~~~~~~l~v~~~~~~~--~~~~~~~~~~g~~~~l~C~-----~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 145 (212)
+.....+.|.|..++... .......+.+|+.+.|.|. +.+.|.+. +.|++++..+... ..+.......
T Consensus 105 g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~--v~W~k~g~~~~~~---~~~~~~~~~~ 179 (339)
T 3o4o_C 105 YCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVK--IQWYKDSLLLDKD---NEKFLSVRGT 179 (339)
T ss_dssp EEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCC--BCCEESSCBCCTT---CSSEEECTTS
T ss_pred ceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCce--EEEecCCeeCCCC---CceeEEcCCc
Confidence 345566777777654321 1122346889999999999 66666665 9999999876321 1122222221
Q ss_pred ceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 146 EVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 146 ~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..|.|.++..+|+|.|+|.+.|.
T Consensus 180 ----~~L~i~~v~~~d~G~Y~C~a~n~ 202 (339)
T 3o4o_C 180 ----THLLVHDVALEDAGYYRCVLTFA 202 (339)
T ss_dssp ----SEEEESSCCGGGCEEEEEEEECC
T ss_pred ----ceEEEcccCHhhCeEEEEEEEEC
Confidence 24999999999999999999986
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.4e-19 Score=129.70 Aligned_cols=164 Identities=11% Similarity=0.123 Sum_probs=99.8
Q ss_pred CeeEeeeCCC-CCc---eEEEEeeCcceeeeeccee--eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc
Q psy13371 1 MLHQRKLKGL-LPT---RVSWIRHRDIHILTVGSYT--YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV 74 (212)
Q Consensus 1 ~~l~C~~~~~-p~~---~v~W~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 74 (212)
+.|.|.+.+. |.+ .|.|+|+++.. ....... ...++++. ....|+|.+++.+|+|.|+|.+.+...
T Consensus 131 v~L~C~~~g~~P~p~~~~i~W~k~~g~~-~~~~~~~~~~~~~g~~~-------~~~~L~I~~~~~~D~G~Y~C~a~n~~~ 202 (323)
T 2wqr_A 131 PTITCLVVDLAPSKGTVQLTWSRASGKP-VNHSTRKEEKQRNGTLT-------VTSTLPVGTRDWIEGETYQCRVTHPHL 202 (323)
T ss_dssp CEEEEEEEEECCCSSCCEEEEEETTCCC-CCCCCCEEEECTTSCEE-------EEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred EEEEEEEeccCCCCCceEEEEEECCCcc-cccccCCCccCCCCCEE-------EEEEEEECHHHccCCCCEEEEEECCCC
Confidence 4699999986 566 99999976422 2211110 01123332 234799999999999999999998631
Q ss_pred eeEEEEEEEe------cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC-ce
Q psy13371 75 RSFFVNLNVV------VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG-EV 147 (212)
Q Consensus 75 ~~~~~~l~v~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~ 147 (212)
.....+.+. .+|.....+.......|+.+.|.|.+.+.+.+...+.|++++..+..............++ ..
T Consensus 203 -~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~ 281 (323)
T 2wqr_A 203 -PRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFF 281 (323)
T ss_dssp -SSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEE
T ss_pred -CCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEE
Confidence 112233332 2332222111111223999999999988544445799999998773211000001111222 22
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+.|.|.+...+|.|.|+|.|.|+.
T Consensus 282 ~~s~L~i~~~~~~d~g~Y~C~a~n~~ 307 (323)
T 2wqr_A 282 VFSRLEVTRAEWEQKDEFICRAVHEA 307 (323)
T ss_dssp EEEEEEEEHHHHHHCCCEEEEEECTT
T ss_pred EEEEEEEChHHccCCCEEEEEEEeCC
Confidence 34569999999999999999999983
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-18 Score=124.49 Aligned_cols=166 Identities=17% Similarity=0.209 Sum_probs=108.4
Q ss_pred CeeEeeeCCCCCc-----eEEEEeeCcceeee----ecceeeecCCceEEEeeC---CCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLLPT-----RVSWIRHRDIHILT----VGSYTYTSDQRFSAIHRR---EGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p~~-----~v~W~~~~~~~~~~----~~~~~~~~~~r~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+.+ .|.|+|++...... .....+....|+...... ..++++|+|.+++.+|+|.|+|.
T Consensus 18 v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 97 (313)
T 4fqp_A 18 VTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCL 97 (313)
T ss_dssp EEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhhCEEEEEE
Confidence 3689999988765 49999977421111 111223334566654221 23457899999999999999998
Q ss_pred ecCC--CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEe-eCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC
Q psy13371 69 LSTQ--PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145 (212)
Q Consensus 69 ~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 145 (212)
+.+. +..+..+.|.+..+|.....+....+..++...+.|.+. +.|.| .+.|++++..+.... ......++
T Consensus 98 v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~--~i~W~~~~~~~~~~~----~~~~~~~~ 171 (313)
T 4fqp_A 98 FVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPA--QITWHSDLGGMPNTS----QVPGFLSG 171 (313)
T ss_dssp EECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCC--EEEEEETTCCEEEEE----EEECSSTT
T ss_pred EeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCc--EEEeecCCccccccc----eeeeeccc
Confidence 8653 344555666666666554444555677788899999876 44544 499999987664221 11111122
Q ss_pred ce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 146 EV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 146 ~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.. ..+.|.|.....+|.|.|+|.|.|.
T Consensus 172 ~~~~~s~l~i~~~~~~d~g~Y~C~a~n~ 199 (313)
T 4fqp_A 172 TVTVTSLWILVPSSQVDGKNVTCKVEHE 199 (313)
T ss_dssp CEEEEEEEEECCCGGGTTCEEEEEEECT
T ss_pred ccccceeeeecccccccCeeEEEEEEcc
Confidence 21 2345888888999999999999986
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=122.37 Aligned_cols=162 Identities=12% Similarity=0.166 Sum_probs=95.4
Q ss_pred CeeEeeeCCC---C-CceEEEEeeCcceeeeecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc
Q psy13371 1 MLHQRKLKGL---L-PTRVSWIRHRDIHILTVGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV 74 (212)
Q Consensus 1 ~~l~C~~~~~---p-~~~v~W~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 74 (212)
+.|.|.+.|. | .+.|.|+|++. .+..... .....++++.. ...|+|.+++.+|+|.|+|.+.+...
T Consensus 29 v~L~C~~~g~~~~p~~~~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~-------~~~L~I~~~~~~D~g~Y~C~~~~~~~ 100 (218)
T 2rgs_A 29 PKVTCVVVDVSEDDPDVQISWFVNNV-EVHTAQTQTHREDYNSTIRV-------VSTLPIQHQDWMSGKEFKCKVNNKDL 100 (218)
T ss_dssp CEEEEEEEEECTTSCCEEEEEEETTE-EECCCEEEEEEETTTTEEEE-------EEEEECCHHHHHTTCCEEEEEEETTC
T ss_pred eeEEEEEcCCccCCCceEEEEEECCc-cccCcccccccccCCCeEEE-------EEEEEEcHHHcCCCCeEEEEEECCcC
Confidence 4799999987 3 48999999873 2211100 01111233332 24799999999999999999998632
Q ss_pred -e--eEEEEE--EEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-E
Q psy13371 75 -R--SFFVNL--NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-T 148 (212)
Q Consensus 75 -~--~~~~~l--~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~ 148 (212)
. ...+.+ .+..+|.....+.......|+.+.|.|.+.+.+++.+.+.|++++..+..... .......++.. .
T Consensus 101 ~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~--~~~~~~~~gt~~~ 178 (218)
T 2rgs_A 101 PSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKD--TAPVLDSDGSYFI 178 (218)
T ss_dssp SSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE--CCCEECTTSCEEE
T ss_pred CCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCcee--cccEECCCCCEEE
Confidence 1 222211 22234433322322222358999999999985333346999999987631110 01112233322 2
Q ss_pred EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.|.+.....+|.|.|+|.|.|+
T Consensus 179 ~s~l~v~~~~~~d~g~YtC~a~n~ 202 (218)
T 2rgs_A 179 YSKLNMKTSKWEKTDSFSCNVRHE 202 (218)
T ss_dssp EEEEEEEHHHHHHCSCEEEEEECT
T ss_pred EEEEEECHHHcCCCCeEEEEEEcC
Confidence 234556555556799999999997
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=120.92 Aligned_cols=162 Identities=11% Similarity=0.170 Sum_probs=98.3
Q ss_pred CeeEeeeCCC-CC-c-eEEEEeeCcceeeeecce--eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCce
Q psy13371 1 MLHQRKLKGL-LP-T-RVSWIRHRDIHILTVGSY--TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR 75 (212)
Q Consensus 1 ~~l~C~~~~~-p~-~-~v~W~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 75 (212)
+.|.|.+.|. |. | .|.|++++. .+...... ....++++.. ...|+|.++..+|+|.|+|.+.+...
T Consensus 31 v~L~C~~~g~~P~~p~~v~W~~~g~-~~~~~~~~~~~~~~~g~~~~-------~s~L~I~~~~~~D~g~Y~C~~~~~~~- 101 (231)
T 2w59_A 31 AKLRCLVVNLPSDSSLSVTWTREKS-GNLRPDPMVLQEHFNGTYSA-------SSAVPVSTQDWLSGERFTCTVQHEEL- 101 (231)
T ss_dssp CEEEEEEEEESCCTTCEEEEECSSS-SCCCCCCCEEEECTTSCEEE-------EEEEECCHHHHHTTCCEEEEEECTTC-
T ss_pred eEEEEEEeCccCCCCeEEEEEcCCe-eccccccccceECCCCcEEE-------EEEEEecchhccCCCEEEEEEEcCCC-
Confidence 4799999995 64 5 999998764 22111110 0112333332 23799999999999999999998631
Q ss_pred eEEEEEEEe------cccce-eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEe------
Q psy13371 76 SFFVNLNVV------VPTAE-ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT------ 142 (212)
Q Consensus 76 ~~~~~l~v~------~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~------ 142 (212)
.....+.+. .+|.. +..+....+ .++.+.|.|.+.+.+++.+.+.|+++|..+.............
T Consensus 102 ~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~ 180 (231)
T 2w59_A 102 PLPLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANG 180 (231)
T ss_dssp SSCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC
T ss_pred CCceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccc
Confidence 123333442 22322 223322222 3557999999998654456799999998874321000001111
Q ss_pred --ec-Cc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 143 --EK-GE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 143 --~~-~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+ +. ...+.|.|.....+|.|.|+|.|.|.
T Consensus 181 ~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~ 214 (231)
T 2w59_A 181 AGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHE 214 (231)
T ss_dssp ---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred cCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcC
Confidence 22 22 23456888877788899999999997
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=119.91 Aligned_cols=169 Identities=17% Similarity=0.248 Sum_probs=102.3
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeee----ecc---eee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILT----VGS---YTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~----~~~---~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+. +...+.|+|........ ... ... ...+|+.+..+...++.+|+|.+++.+|+|.|.|.
T Consensus 41 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 120 (256)
T 3sob_H 41 LRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCA 120 (256)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcccCEEEEEE
Confidence 3689999764 35789999865322111 100 001 12479999876667889999999999999999999
Q ss_pred ecCCC------------ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEee
Q psy13371 69 LSTQP------------VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYD 132 (212)
Q Consensus 69 ~~~~~------------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~ 132 (212)
+.+.+ .......|.|.. +|.....++...+.+|+.+.|.|.+.+.+++...+.| ++..+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W--~~~~~~~~ 198 (256)
T 3sob_H 121 RGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSG 198 (256)
T ss_dssp EESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTT
T ss_pred EecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--CCcccCCC
Confidence 98632 122334566653 2222222333345689999999999885443557899 55433110
Q ss_pred CCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 133 SSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 133 ~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
... .......++.. ..+.|.|.....+| |.|+|.+.|+.
T Consensus 199 ~~~-~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~ 238 (256)
T 3sob_H 199 VHT-FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 238 (256)
T ss_dssp EEE-CCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGG
T ss_pred eEe-CCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCC
Confidence 000 00112222322 23568888888888 99999999973
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-19 Score=129.09 Aligned_cols=150 Identities=15% Similarity=0.245 Sum_probs=102.0
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.+.| .+.+.|+|++....... ..+.|+... +.+|.|.+++.+|+|.|+|.+.+. +.....
T Consensus 23 v~L~C~~~~~~~~~~v~W~k~~~~~~~~~-----~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 91 (315)
T 1itb_B 23 DVRPCPLNPNEHKGTITWYKDDSKTPVST-----EQASRIHQH------KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK 91 (315)
T ss_dssp CCCBCCCCSCCCSSCCCEECTTSCSCSCC-----CTTSSSEEC------SSBEECTTCCGGGCSCCEECCCSSSCCCCEE
T ss_pred EEEEeeccCcCCCceEEEEeCCCcCcccc-----ccCCcEecc------CCeEEECCCChhhCEEEEEEEeCCceEEEEE
Confidence 46899999987 89999999874221111 113344443 127999999999999999999985 333334
Q ss_pred EEEEEecccc-eeeCC---CceeeeCCCcEEEEeEE------eeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceE
Q psy13371 79 VNLNVVVPTA-EILGS---PDLHVDEGSTINLTCSI------KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148 (212)
Q Consensus 79 ~~l~v~~~~~-~~~~~---~~~~~~~g~~~~l~C~~------~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (212)
+.+.+...++ ....+ ....+..|+.+.|.|.+ .+.|.|. +.|++++..+.... .......+
T Consensus 92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~--i~W~k~~~~l~~~~----~~~~~~~~--- 162 (315)
T 1itb_B 92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPK--LQWYKDCKPLLLDN----IHFSGVKD--- 162 (315)
T ss_dssp CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCC--CEEEETTEECCCCS----SSEEEETT---
T ss_pred EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCE--EEEEECCEECCCcc----ceEeecCc---
Confidence 4444433222 21111 13467889999999998 6666566 99999998874321 11222232
Q ss_pred EEEEEEeeeeecCCEEEEEEcc-cC
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPS-NA 172 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~-n~ 172 (212)
.|.|.++..+|+|.|+|.+. |.
T Consensus 163 --~L~i~~v~~~d~G~Y~C~a~~n~ 185 (315)
T 1itb_B 163 --RLIVMNVAEKHRGNYTCHASYTY 185 (315)
T ss_dssp --EEEESSCCGGGCEEEEEEEEEEE
T ss_pred --eEEEEeceehhCcEEEEEEEcCC
Confidence 49999999999999999999 55
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-17 Score=111.68 Aligned_cols=146 Identities=14% Similarity=0.231 Sum_probs=92.7
Q ss_pred eeEeeeC--CCCCceEEEEe--eCcceeeee--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc
Q psy13371 2 LHQRKLK--GLLPTRVSWIR--HRDIHILTV--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV 74 (212)
Q Consensus 2 ~l~C~~~--~~p~~~v~W~~--~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~ 74 (212)
.|.|... +.+.+.|.|+| ++. .+... .......++|+.+. .+++|+|.+++.+|+|.|+|.+.+. +.
T Consensus 18 ~L~~~~~~~~~~~~~i~W~k~~~~~-~i~~~~~~~~~~~~~~R~~~~-----~ngsL~I~~v~~~DsG~Y~c~~~n~~g~ 91 (182)
T 1hnf_A 18 NLDIPSFQMSDDIDDIKWEKTSDKK-KIAQFRKEKETFKEKDTYKLF-----KNGTLKIKHLKTDDQDIYKVSIYDTKGK 91 (182)
T ss_dssp EECCTTCCCCSSEEEEEEEEGGGCC-EEEEECGGGCEEESCTTEEEC-----TTSCEEECSCCGGGCEEEEEEEEETTSC
T ss_pred EEeCCcccccCcCCEEEEEECCCCc-EEEEEeCccCCCCCCCeEEEC-----CCCCEEECCCChhhCEEEEEEEEeCCCc
Confidence 5777442 34678999999 553 22211 11111235677775 3448999999999999999999875 32
Q ss_pred e--eEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 75 R--SFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 75 ~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
. ...+.|.|..+.. .+.... .+..+.|.|.+.+.|.|. +.|+++++.+. . . .. .+
T Consensus 92 ~~~~~~~~L~V~~~~~----~P~i~~-~~~~v~L~C~~~~~p~~~--~~W~~~g~~l~-~-~---------~~-----~i 148 (182)
T 1hnf_A 92 NVLEKIFDLKIQERVS----KPKISW-TCINTTLTCEVMNGTDPE--LNLYQDGKHLK-L-S---------QR-----VI 148 (182)
T ss_dssp EEEEEEEEEEEECCCC----CCEEEE-ETTTTEEEEECSSCSSCE--EEEEESSCEEE-E-E---------SS-----CE
T ss_pred eeEEEEEEEEEcCcCC----CCEEEE-ccCcEEEEeEccCCCCCE--EEEEECCEECC-C-C---------Cc-----EE
Confidence 2 3456677765321 111122 234799999998776555 99999998771 1 0 11 13
Q ss_pred EEeeeeecCCEEEEEEcccCCeeEE
Q psy13371 153 LIQQAELKDSGKYSCSPSNADVASV 177 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~~~~~~ 177 (212)
.+.. ..+|.|.|+|.|.|+.+...
T Consensus 149 ~~~~-~~~d~G~Y~C~a~N~~~~~~ 172 (182)
T 1hnf_A 149 THKW-TTSLSAKFKCTAGNKVSKES 172 (182)
T ss_dssp EEEC-CSCEEEEEEEEEECSSCEEE
T ss_pred EEec-ccCCCcEEEEEEEeCCCCcE
Confidence 3322 46899999999999954433
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-18 Score=121.33 Aligned_cols=169 Identities=12% Similarity=0.144 Sum_probs=100.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eeecc----eeeecCC-ceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTVGS----YTYTSDQ-RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~~~----~~~~~~~-r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+.+.+.+.|+|...... ..... ......+ |+.+..+.... |+|.+++.+|+|.|.|.+.+
T Consensus 19 v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~---L~I~~v~~~DsG~Y~C~~~~ 95 (253)
T 3to4_D 19 VNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE---LRLQVANMSQGRTLYCTSSA 95 (253)
T ss_dssp EEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC---CEEEEESCSSCEEEEEEEEC
T ss_pred EEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe---EEEccCChhhCeEEEEEEec
Confidence 3699999999999999998543111 11110 0001123 88777432222 99999999999999999975
Q ss_pred CC-------ceeEEEEEEEec------ccce-eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCc
Q psy13371 72 QP-------VRSFFVNLNVVV------PTAE-ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGG 137 (212)
Q Consensus 72 ~~-------~~~~~~~l~v~~------~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~ 137 (212)
.. .......|.|.. +|.. +..+....+..|+.++|.|.+.+.+++...+.|++++..+........
T Consensus 96 ~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~ 175 (253)
T 3to4_D 96 DHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDP 175 (253)
T ss_dssp SCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECS
T ss_pred CCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCCceeccc
Confidence 32 112233566653 2211 122222233456899999999985444446999999987732110000
Q ss_pred eeEEe----ecCce-EEEEEEEeeeeecC-CEEEEEEcccC
Q psy13371 138 VSVIT----EKGEV-TTSYLLIQQAELKD-SGKYSCSPSNA 172 (212)
Q Consensus 138 ~~~~~----~~~~~-~~~~l~i~~~~~~d-~g~y~C~~~n~ 172 (212)
..... .++.. ..+.|.+.....+| .|.|+|.+.|.
T Consensus 176 ~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~ 216 (253)
T 3to4_D 176 QPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFY 216 (253)
T ss_dssp SCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred ccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeC
Confidence 00000 12222 23457777766666 77999999986
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=128.07 Aligned_cols=167 Identities=15% Similarity=0.215 Sum_probs=107.8
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee----eec---cee---eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL----TVG---SYT---YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~----~~~---~~~---~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|+...... ... ... ....+|+.+..+...+.++|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 97 (444)
T 1igt_B 18 LKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCA 97 (444)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHHHCEEEEEE
Confidence 36999999875 689999997532111 100 000 012468988865556788999999999999999999
Q ss_pred ecCCC-c---eeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCcee
Q psy13371 69 LSTQP-V---RSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVS 139 (212)
Q Consensus 69 ~~~~~-~---~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~ 139 (212)
+.+.. . ....+.|.|.. +|.....++...+.+|+.+.|.|.+.+. |.| ..+.|++++......... .
T Consensus 98 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~~~~~~~~~--~- 173 (444)
T 1igt_B 98 RHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEP-VTLTWNSGSLSSGVHTFP--A- 173 (444)
T ss_dssp EECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEECC--C-
T ss_pred EecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCC-cEEEEecCCCCCCeEecC--c-
Confidence 98853 1 22345677763 2222222333345789999999999875 443 359999888652111000 0
Q ss_pred EEeecCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 140 VITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 140 ~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
....+. ...+.|.|.+...+| |.|+|.|.|..
T Consensus 174 -~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~ 206 (444)
T 1igt_B 174 -VLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPA 206 (444)
T ss_dssp -EEETTEEEEEEEEEECSTTTTT-SCCEEEEEETT
T ss_pred -cccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCC
Confidence 011121 123568898888889 99999999983
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-17 Score=125.94 Aligned_cols=171 Identities=11% Similarity=0.135 Sum_probs=106.9
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce-e---eee--c-c---eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH-I---LTV--G-S---YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~-~---~~~--~-~---~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|..... . ... . . ......+|+.+..+...+.++|+|.+++.+|+|.|.|.
T Consensus 19 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 98 (475)
T 1iga_A 19 VKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCA 98 (475)
T ss_pred EEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCChhhCEEEEEE
Confidence 46999999865 6789999975211 1 110 0 0 00112478888765456678999999999999999999
Q ss_pred ecCCCc-------eeEEEEEEEec---ccceeeCCCceeeeCCCcEEEEeEEeeCCCC-CceEEEEEcCeEEEeeCCCCc
Q psy13371 69 LSTQPV-------RSFFVNLNVVV---PTAEILGSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWYHHDEVISYDSSRGG 137 (212)
Q Consensus 69 ~~~~~~-------~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~~~~~~~~~~~~~ 137 (212)
+.+... ....+.|.|.. .++.+.........+|+.+.|.|.+.+.+++ ...+.|++++........
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~--- 175 (475)
T 1iga_A 99 RDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNF--- 175 (475)
T ss_pred EeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeC---
Confidence 987531 22345677753 1122222112223689999999999987333 236999987743211100
Q ss_pred eeEE-eecCc-eEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 138 VSVI-TEKGE-VTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 138 ~~~~-~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
.... ..++. ...+.|.|.+...+|.|.|+|.|.|...
T Consensus 176 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 214 (475)
T 1iga_A 176 PPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTN 214 (475)
T ss_pred CceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCC
Confidence 0011 12222 2234588888888999999999999843
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-18 Score=119.95 Aligned_cols=169 Identities=16% Similarity=0.176 Sum_probs=103.0
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeee----ecc---eee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILT----VGS---YTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~----~~~---~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+. +...+.|+|........ ... ... ...+|+.+..+...++.+|+|.+++.+|+|.|.|.
T Consensus 18 v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 97 (226)
T 3mlr_H 18 LKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQASDTGKYFCT 97 (226)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGGGCEEEEEE
T ss_pred EEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCcccCEEEEEe
Confidence 3699999764 46799999965321111 100 000 12479999876666789999999999999999999
Q ss_pred ecCCC----------ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC
Q psy13371 69 LSTQP----------VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS 134 (212)
Q Consensus 69 ~~~~~----------~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~ 134 (212)
+.+.. .......|.|.. +|.....++...+..|+.+.|.|.+.+.+++.+.+.| ++..+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~- 174 (226)
T 3mlr_H 98 RLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGV- 174 (226)
T ss_dssp EEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--GGGTCCTTE-
T ss_pred EccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--CCccccCCe-
Confidence 87632 011223566643 1212212223345678999999999886544567899 443221000
Q ss_pred CCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 135 RGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 135 ~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.........++.. ..+.|.|.....+| |.|+|.+.|+.
T Consensus 175 ~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~ 213 (226)
T 3mlr_H 175 HTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 213 (226)
T ss_dssp EECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGG
T ss_pred EeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECC
Confidence 0000112222322 23568888887788 99999999984
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-19 Score=131.29 Aligned_cols=161 Identities=16% Similarity=0.264 Sum_probs=108.0
Q ss_pred CeeEee-----eCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--
Q psy13371 1 MLHQRK-----LKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-- 73 (212)
Q Consensus 1 ~~l~C~-----~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-- 73 (212)
+.|.|. +.+.|.+.+.|+|++. .+... ..++.... +...|.|.+++.+|+|.|+|.+.+..
T Consensus 138 v~l~C~~~~~~~~g~p~~~v~W~k~g~--~~~~~------~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 205 (339)
T 3o4o_C 138 GVLVCPDLSEFTRDKTDVKIQWYKDSL--LLDKD------NEKFLSVR----GTTHLLVHDVALEDAGYYRCVLTFAHEG 205 (339)
T ss_dssp EEEECCSCTTTCCSSSCCCBCCEESSC--BCCTT------CSSEEECT----TSSEEEESSCCGGGCEEEEEEEECCBTT
T ss_pred EEEEecCCcccccCCCCceEEEecCCe--eCCCC------CceeEEcC----CcceEEEcccCHhhCeEEEEEEEECCCC
Confidence 368999 7888999999999773 22211 23444431 23489999999999999999998742
Q ss_pred ---ceeEEEEEEEecc-----cceeeCCCceeeeCCCcEEEEeEE---eeCCCCCceEEEEEcCeEEEeeCCC-----Cc
Q psy13371 74 ---VRSFFVNLNVVVP-----TAEILGSPDLHVDEGSTINLTCSI---KYSPEPPAYIFWYHHDEVISYDSSR-----GG 137 (212)
Q Consensus 74 ---~~~~~~~l~v~~~-----~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~p~~~v~W~~~~~~~~~~~~~-----~~ 137 (212)
..+..+.|.|... |.....+....+..|+.+.|.|.+ .+.|. ...+.|++++..+...... ..
T Consensus 206 ~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~-~~~v~W~~~g~~~~~~~~~~~~~~~~ 284 (339)
T 3o4o_C 206 QQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPL-TTMLWWTANDTHIESAYPGGRVTEGP 284 (339)
T ss_dssp BCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCS-SCEEEEESSSSCSSSSSCSSSCEECC
T ss_pred eEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCC-CceEEEEECCeecccccccccceecc
Confidence 2455677777643 233333455678899999999999 66652 3358999988765322111 11
Q ss_pred eeEEeecC-ceEEEEEEEeeeeecCC-EEEEEEcccCCe
Q psy13371 138 VSVITEKG-EVTTSYLLIQQAELKDS-GKYSCSPSNADV 174 (212)
Q Consensus 138 ~~~~~~~~-~~~~~~l~i~~~~~~d~-g~y~C~~~n~~~ 174 (212)
......++ ....+.|.|.++..+|. |.|+|.|.|..+
T Consensus 285 ~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G 323 (339)
T 3o4o_C 285 RQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLS 323 (339)
T ss_dssp CEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTE
T ss_pred eEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccC
Confidence 11112222 22233599999999997 999999999843
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=130.51 Aligned_cols=155 Identities=21% Similarity=0.220 Sum_probs=109.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCC------CEEEEEEecCCC-
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRD------AGVYECQLSTQP- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d------~G~Y~C~~~~~~- 73 (212)
+.|.|.+.|.|.|.+.|+|.++..+.... ...... .+++|.|.+++.+| +|.|+|.+.+..
T Consensus 22 v~l~C~~~g~p~p~v~W~k~~g~~~~~~~-------~~~~~~-----~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g 89 (388)
T 2v5m_A 22 AEIECKASGNPMPEIIWIRSDGTAVGDVP-------GLRQIS-----SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 89 (388)
T ss_dssp EEEECEEEEESCCEEEEEETTSCBCCCBT-------TTBEEC-----STTEEEECCCCGGGCCHHHHEEEEEEEEEETTE
T ss_pred EEEEEECCCCCCCEEEEEcCCCCccccCC-------CceEEc-----CCceEEecccChhhccccccCceEEEEEEccCC
Confidence 36899999999999999995432332211 111111 23479999999997 999999999863
Q ss_pred c-eeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCC-CCceEEEEEcCeEEEeeCC-CCceeEEeecCceEEE
Q psy13371 74 V-RSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYHHDEVISYDSS-RGGVSVITEKGEVTTS 150 (212)
Q Consensus 74 ~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-p~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 150 (212)
. .+..+.+.+..++.....+....+.+|+.+.|.|.+.+.+. |...+.|++++..+..... ...+......+.
T Consensus 90 ~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~---- 165 (388)
T 2v5m_A 90 SIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE---- 165 (388)
T ss_dssp EEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSC----
T ss_pred eEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCc----
Confidence 2 24456677766665555566678999999999999987643 3356999999876643211 112233333333
Q ss_pred EEEEeeeeecCC-EEEEEEcccC
Q psy13371 151 YLLIQQAELKDS-GKYSCSPSNA 172 (212)
Q Consensus 151 ~l~i~~~~~~d~-g~y~C~~~n~ 172 (212)
|.|.++..+|. |.|+|.+.|.
T Consensus 166 -L~i~~v~~~d~~G~Y~C~~~n~ 187 (388)
T 2v5m_A 166 -LHIREVGPEDGYKSYQCRTKHR 187 (388)
T ss_dssp -EEESSCCGGGGGCCEEEEEEET
T ss_pred -EEEecCCccccCeeEEEEeccC
Confidence 99999999999 9999999986
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=117.93 Aligned_cols=146 Identities=13% Similarity=0.110 Sum_probs=97.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC---ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP---VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~ 77 (212)
+.|.|.+.+ +.+.+.|+|++. ...... . +. .....+..|.|.+++.+|+|.|+|.+.+.. ..+.
T Consensus 24 VtL~C~~~~-~~~~~~w~k~g~--~~~~~~-----~-~~----~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~ 90 (242)
T 1p6f_A 24 VTICCQGNY-GAVEYQLHFEGS--LFAVDR-----P-KP----PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSN 90 (242)
T ss_dssp EEEEEECCT-TCCEEEEEETTE--EEEEEC-----C-SS----CTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCC
T ss_pred EEEEEeeCC-CCcEEEEEECCC--cccccc-----c-cc----cCCcceeEEEecCCCcccCeEEEEEEecCCccccCCc
Confidence 469999975 456899999873 221100 0 00 022356689999999999999999987642 2345
Q ss_pred EEEEEEec--ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe
Q psy13371 78 FVNLNVVV--PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 78 ~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.+.|.|.. +++.+...+...+.+|+.++|.|.+.+. .+ .+.|++++..+... .. ... ....|.|.
T Consensus 91 ~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~-~~--~~~w~k~g~~~~~~-------~~-~~~--~~~~l~I~ 157 (242)
T 1p6f_A 91 LLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA-TS--MFLLLKEGRSSHVQ-------RG-YGK--VQAEFPLG 157 (242)
T ss_dssp CEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTS-CS--EEEEEECSSSCEEE-------EE-ECS--SEEEEEEE
T ss_pred ceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCC-CC--EEEEEECCCccCcc-------cc-CCC--ceEEEEeC
Confidence 56777764 2233322234568899999999998643 23 59999998765321 00 111 12359999
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
+++.+|+|.|+|.+.|.
T Consensus 158 ~v~~~d~G~Y~C~a~n~ 174 (242)
T 1p6f_A 158 PVTTAHRGTYRCFGSYN 174 (242)
T ss_dssp ECCGGGCEEEEEEEEEE
T ss_pred CCccccCEEEEEEEECC
Confidence 99999999999999874
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=120.77 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=101.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+ .+.|+|++... . .. . . ....|.|.+++.+|+|.|+|.+.+ + .+..+.
T Consensus 30 v~l~C~~~~----~i~W~~~~~~~-~------------~~-~--~--~~~~L~i~~~~~~d~G~Y~C~~~n-g-~~~~~~ 85 (290)
T 2o26_X 30 LSLTCIDPD----FVRWTFKTYFN-E------------MV-E--N--KKNEWIQEKAEATRTGTYTCSNSN-G-LTSSIY 85 (290)
T ss_dssp EEEEEECTT----EEEEEEECSSS-C------------EE-E--E--CSSEEEETTCCGGGCEEEEEEESS-S-CEEEEE
T ss_pred EEEEECCCC----cEEEecCCcce-e------------ee-c--C--CCceEEEeccCHHhCeEEEEEeeC-C-ccEEEE
Confidence 368999988 89999988422 0 00 0 0 115899999999999999999999 3 377778
Q ss_pred EEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEE-EcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY-HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 81 l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
|.|..++.....+....+.+|+.+.|.|.+.+ |. ...+.|+ +++..+. ...+......+ .|.|.++..
T Consensus 86 l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~-~~~v~W~~~~g~~l~----~~~~~~~~~~~-----~L~i~~v~~ 154 (290)
T 2o26_X 86 VFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQ-VSQYSLIECDGKSLP----TDLTFVPNPKA-----GITIKNVKR 154 (290)
T ss_dssp EEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CS-CEEEEEEETTSCCCC----TTCEEEEETTT-----EEEEESCCG
T ss_pred EEEeCCCcccccccceEEecCCeEEEeCcCCC-CC-CceEEEEeCCCcCCC----CCCceeeCCCC-----CEEEecccH
Confidence 88887665555666778889999999999973 44 1459995 5666552 22222223333 399999999
Q ss_pred cCCE-EEEEEcccCC
Q psy13371 160 KDSG-KYSCSPSNAD 173 (212)
Q Consensus 160 ~d~g-~y~C~~~n~~ 173 (212)
+|+| .|+|.|.|..
T Consensus 155 ~d~G~~Y~C~a~n~~ 169 (290)
T 2o26_X 155 AYHRLCVRCAAQRDG 169 (290)
T ss_dssp GGTTCEEEEEEEETT
T ss_pred HHCCCEEEEEEEECC
Confidence 9999 9999999973
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-17 Score=111.71 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=100.8
Q ss_pred CeeEeeeCCCCCc--eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-ceeE
Q psy13371 1 MLHQRKLKGLLPT--RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~ 77 (212)
+.|.|.+ +.|.| .|.|++.+.. + + +... ......|.|.+++.+|+|.|.|.+.+.. ....
T Consensus 25 v~L~C~a-~~p~P~~~i~W~~~~~~-l---~--------~~~~----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~ 87 (210)
T 1gsm_A 25 RQLTCRL-ACADRGASVQWRGLDTS-L---G--------AVQS----DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQH 87 (210)
T ss_dssp EEEEEEE-CCSSTTCEEEEESSTTT-T---C--------CEEE----ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred EEEEEEC-CCCCCCcceEEeecccc-c---C--------cEEe----cCCccEEEECccCcccCceEEEEEEeCCCceEE
Confidence 4699999 88878 9999985521 1 1 1111 1245689999999999999999999864 4556
Q ss_pred EEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeC-CCC--CceEEEEEcCeEEEeeCCCCceeE-----E--eecCc-
Q psy13371 78 FVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYS-PEP--PAYIFWYHHDEVISYDSSRGGVSV-----I--TEKGE- 146 (212)
Q Consensus 78 ~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p--~~~v~W~~~~~~~~~~~~~~~~~~-----~--~~~~~- 146 (212)
.+.|+|..+|......+. ....|+.. |.|.+.+. |.+ ...+.|+++++++........... . .....
T Consensus 88 ~~~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (210)
T 1gsm_A 88 TVQLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLF 165 (210)
T ss_dssp EEEEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCE
T ss_pred EEEEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEE
Confidence 788888877643332222 56677888 99999875 544 456999999998832110000000 0 01111
Q ss_pred eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 147 VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..++++.+.....+|.+.|+|.|.+.
T Consensus 166 ~vts~~~~~~~~~D~~~~~tC~a~~~ 191 (210)
T 1gsm_A 166 RVTERWRLPPLGTPVPPALYCQATMR 191 (210)
T ss_dssp EEEEEEECCCCCSSCCSEEEEEEEEE
T ss_pred EEEEEEeecCCcccCCceEEEEEEee
Confidence 12355666666667778999999986
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-18 Score=125.26 Aligned_cols=145 Identities=21% Similarity=0.276 Sum_probs=97.2
Q ss_pred CeeEeeeCCC---------CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCE-EEEEEec
Q psy13371 1 MLHQRKLKGL---------LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~---------p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~ 70 (212)
+.|.|.+.+. |.+.+.|+|++.. +.. ..|. . .+..|.|.+++.+|+| .|+|.+.
T Consensus 47 v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~-~~~--------~~~~-~------~~~~L~i~~v~~~D~Gs~Y~C~a~ 110 (329)
T 3oq3_B 47 FSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKT-RRP--------LNRR-V------KNGDLWIANYTSNDSHRRYLCTVT 110 (329)
T ss_dssp EEECCHHHHCTTTGGGSCCTTCEEEEEECSSS-CEE--------CSTT-E------ETTEEEESSCCGGGGGCCEEEEEE
T ss_pred EEEEccCCCCccccccccCCCCeeEEEECCCC-ccc--------cCce-e------ecceEEEcCCChHhCCCcEEEEEE
Confidence 3688998884 5689999998842 211 1122 1 1338999999999999 9999999
Q ss_pred CCC-ceeEEEEEEEec-ccceeeCCCceeeeCCCcEEEEeEEeeCC-CCCceEEEEEcCeEEEeeCCCCceeEEeecCce
Q psy13371 71 TQP-VRSFFVNLNVVV-PTAEILGSPDLHVDEGSTINLTCSIKYSP-EPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147 (212)
Q Consensus 71 ~~~-~~~~~~~l~v~~-~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (212)
+.. .........+.. ++.....+....+.+|+.+.|.|.+.+.| .|. +.|++++..+... ..+.. ...+
T Consensus 111 n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~--i~W~k~~~~l~~~---~~~~~-~~~~-- 182 (329)
T 3oq3_B 111 TKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNN--ITWYKNNQELIID---GTKYS-QSGQ-- 182 (329)
T ss_dssp CTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCE--EEEEETTEECCCS---SSSEE-EETT--
T ss_pred eCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCce--EEEEECCccCCCC---CceEe-cCCC--
Confidence 853 322222223333 33222222223456799999999998876 454 9999999877321 11222 2222
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|.|.++..+|+|.|+|.|.|.
T Consensus 183 ---~L~I~~v~~~D~G~Y~C~a~n~ 204 (329)
T 3oq3_B 183 ---NLIIHNPELEDSGRYDCYVHYD 204 (329)
T ss_dssp ---EEEECSCCGGGCEEEEEEEEEC
T ss_pred ---EEEEeecChhhCEEEEEEEEec
Confidence 4999999999999999999974
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-18 Score=121.25 Aligned_cols=162 Identities=14% Similarity=0.177 Sum_probs=96.8
Q ss_pred CeeEeeeCCC---CCc-eEEEEeeCcceeeeec--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc
Q psy13371 1 MLHQRKLKGL---LPT-RVSWIRHRDIHILTVG--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV 74 (212)
Q Consensus 1 ~~l~C~~~~~---p~~-~v~W~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 74 (212)
+.|.|.+.+. |.+ .|.|+|+++ .+.... ......++++.. ...|.|.+++.+|+|.|+|.+.+...
T Consensus 35 v~L~C~~~g~~~~P~~~~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~-------~s~L~I~~~~~~D~g~Y~C~~~~~~~ 106 (239)
T 1i1c_A 35 PKVTCVVVDISQNDPEVRFSWFIDDV-EVHTAQTHAPEKQSNSTLRS-------VSELPIVERDWLNGKTFKCKVNSGAF 106 (239)
T ss_dssp CEEEEEEEEECTTCCCCEEEEEESSC-EECCCEECCCEECTTSCEEE-------EEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred EEEEEEEecCccCCCCCEEEEEECCc-cccCcccccceEcCCCcEEE-------EEEEEEEhhHccCCCeEEEEEecccC
Confidence 4799999987 766 999999874 322110 001112233332 34799999999999999999998632
Q ss_pred -eeEEEEE----EEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-E
Q psy13371 75 -RSFFVNL----NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-T 148 (212)
Q Consensus 75 -~~~~~~l----~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~ 148 (212)
......+ .+..+|.....+.......|+.+.|.|.+.+.+++.+.+.|+++|..+..... .......++.. .
T Consensus 107 ~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~--~~~~~~~dgt~~~ 184 (239)
T 1i1c_A 107 PAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKN--TPPTMDTDGSYFL 184 (239)
T ss_dssp SSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE--CCCEECTTSCEEE
T ss_pred CCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCcee--cCceECCCCCEEE
Confidence 1121122 12233433332222222347889999999986545457999999987631110 11122233322 2
Q ss_pred EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.|.+.....+|.|.|+|.+.|+
T Consensus 185 ~s~l~v~~~~~~~~g~YtC~v~n~ 208 (239)
T 1i1c_A 185 YSKLNVKKETWQQGNTFTCSVLHE 208 (239)
T ss_dssp EEEEEEEHHHHHTTCCEEEEEECT
T ss_pred EEEEEEChhhcCCCCEEEEEEECC
Confidence 334555555556799999999998
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-17 Score=117.35 Aligned_cols=151 Identities=17% Similarity=0.094 Sum_probs=96.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC------Cc
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ------PV 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~------~~ 74 (212)
+.|.|.+.+ +.+.+.|+|++.. +..... ..+. .....+..|.|.+++.+|+|.|+|.+.+. ..
T Consensus 24 VtL~C~~~~-~~~~~~W~k~g~~-~~~~~~-----~~~~----~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~ 92 (257)
T 1b6u_A 24 VILQCWSDV-RFQHFLLHREGKF-KDTLHL-----IGEH----HDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSA 92 (257)
T ss_dssp EEEEEEESS-CCSEEEEEEESTT-CEEEEE-----ECBC----CTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCC
T ss_pred EEEEEecCC-CCcEEEEEECCCC-CCccee-----eeec----cCCCceEEEEeecCCcccCEEEEEeEeccCCCccccc
Confidence 469999975 5689999998842 111100 0000 01234568999999999999999998642 12
Q ss_pred eeEEEEEEEecc--cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 75 RSFFVNLNVVVP--TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 75 ~~~~~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
.+..+.|.|... ++.+...+...+.+|+.++|.|.+.+.+ + .+.|++++..+...... .....+ .....|
T Consensus 93 ~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~~-~--~~~w~k~g~~~~~~~~~----~~~~~~-~~~~~l 164 (257)
T 1b6u_A 93 PSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSY-D--MYHLSREGEAHERRFSA----GPKVNG-TFQADF 164 (257)
T ss_dssp CCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSCC-S--EEEEEETTSSCEECCBC----BCCSSS-CCBEEE
T ss_pred cCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCCC-c--EEEEEECCcccCccccc----ccccCC-ceeEEE
Confidence 345667777653 2333333334688999999999986542 3 59999999766432111 000111 011348
Q ss_pred EEeeeeecCCEEEEEEcccC
Q psy13371 153 LIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|.+++ |+|.|+|.+.+.
T Consensus 165 ~I~~v~--D~G~Y~C~a~~~ 182 (257)
T 1b6u_A 165 PLGPAT--HGGTYRCFGSFR 182 (257)
T ss_dssp EEEECC--SCEEEEEEEECS
T ss_pred Eecccc--cCEEEEEEEEcC
Confidence 998888 999999999863
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=121.25 Aligned_cols=159 Identities=17% Similarity=0.134 Sum_probs=99.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~ 78 (212)
+.|.|.+. .|.|.+.|++.+........ + +.+ ...+ ..+|+|.|+|.+.+.. ..+..
T Consensus 113 v~l~C~~~-~p~~~v~w~~~~~~~~~~~~---~--~~~----------~~~~-----~~~d~G~Y~C~a~n~~~~~~s~~ 171 (289)
T 3mjg_X 113 ITIPCRVT-DPQLVVTLHEKKGDVALPVP---Y--DHQ----------RGFS-----GIFEDRSYICKTTIGDREVDSDA 171 (289)
T ss_dssp EEECCCBS-CTTSCEEEEESSCCSCCCCC---E--ETT----------TEEE-----ECCCSSEEEEEEEETTEEEECCC
T ss_pred EEEEeEcC-CCCceEEEEeCCCCCcccee---e--cCC----------cCee-----eeccCcEEEEEEEeCCceeeeee
Confidence 36899998 67789999987632222100 0 000 1111 3579999999998643 23334
Q ss_pred EEEEEec--ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec-CceEEEEEEEe
Q psy13371 79 VNLNVVV--PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK-GEVTTSYLLIQ 155 (212)
Q Consensus 79 ~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~ 155 (212)
..+.+.. ++.....+....+.+|+.+.|.|.+.+.|.|. +.|+++++..... .......... .....+.|.|.
T Consensus 172 ~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~--v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~I~ 247 (289)
T 3mjg_X 172 YYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVN--FEWTYPRKESGRL--VEPVTDFLLDMPYHIRSILHIP 247 (289)
T ss_dssp EEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBE--EEEECTTSSSSCC--CCCEEEESCTTTTEEEEEEEES
T ss_pred EEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcc--eEEEcCCccCCCc--ccccccccCCcceEEEEEEEEc
Confidence 5566654 33344444556789999999999999876555 9999876533110 0001111111 12344679999
Q ss_pred eeeecCCEEEEEEcccC---CeeEEEEEEeec
Q psy13371 156 QAELKDSGKYSCSPSNA---DVASVYVHVLNG 184 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~---~~~~~~~~v~~~ 184 (212)
++..+|+|.|+|.|.|. ...+..+.+...
T Consensus 248 ~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~ 279 (289)
T 3mjg_X 248 SAELEDSGTYTCNVTESVNDHQDEKAINITVV 279 (289)
T ss_dssp SCCSSCCEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred ccChhhCcEEEEEeecCCCCceeEEEEEEEEE
Confidence 99999999999999998 345555555443
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=116.51 Aligned_cols=162 Identities=11% Similarity=0.160 Sum_probs=90.1
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcceeeeec--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIHILTVG--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV 74 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 74 (212)
+.|.|.+.|.+ .+.|.|+|++. .+.... ......++.+.+.. .|.|.....+|+|.|+|.+.+...
T Consensus 21 v~L~C~~~g~~p~~~~~~v~W~k~~~-~~~~~~~~~~~~~~~g~~~~~~-------~l~i~~~d~~d~g~Y~C~a~n~~~ 92 (207)
T 1l6x_A 21 PEVTCVVVDVSHEDPEVKFNWYVDGV-EVHNAKTKPREEQYNSTYRVVS-------VLTVLHQDWLNGKEYKCKVSNKAL 92 (207)
T ss_dssp CEEEEEEEEECSSSCCCEEEEEETTE-EECCCEECCCEECTTSCEEEEE-------EEECCHHHHHTTCCEEEEEECTTS
T ss_pred eEEEEEEecccCCCCCeEEEEEECCc-cccCcccCCceeccCCcEEEEE-------EEEEEHHHccCCceEEEEEEcCcC
Confidence 46999999875 34999999873 221110 01111123333321 344545555569999999998632
Q ss_pred -eeEEEEEE----EecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-E
Q psy13371 75 -RSFFVNLN----VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-T 148 (212)
Q Consensus 75 -~~~~~~l~----v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~ 148 (212)
......+. +..+|.....+.......|+.+.|.|.+.+.+++.+.+.|++++..+..... .......++.. .
T Consensus 93 ~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~--~~~~~~~~gt~~~ 170 (207)
T 1l6x_A 93 PAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKT--TPPVLDSDGSFFL 170 (207)
T ss_dssp SSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE--CCCEECTTSCEEE
T ss_pred CcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccc--cCceECCCCCEEE
Confidence 21222231 2233332222222122345669999999986444456999999987631110 11122233322 2
Q ss_pred EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.|.+.....+|.|.|+|.|.|.
T Consensus 171 ~s~l~i~~~~~~~~g~YtC~a~n~ 194 (207)
T 1l6x_A 171 YSKLTVDKSRWQQGNVFSCSVMHE 194 (207)
T ss_dssp EEEEEEEHHHHHTTCCEEEEEECT
T ss_pred EEEEEECHHHcCCCCEEEEEEEcC
Confidence 234556555557899999999997
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-17 Score=119.85 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=97.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC------Cc
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ------PV 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~------~~ 74 (212)
+.|.|.+.+. .+.+.|+|++.. +.. .. ........|.|.+++.+|+|.|+|.+.+. ..
T Consensus 41 v~L~C~~~~~-~~~~~W~k~g~~-~~~-~~-------------~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~ 104 (316)
T 3vh8_G 41 VTLRCHYRHR-FNNFMLYKEDRI-HIP-IF-------------HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSA 104 (316)
T ss_dssp EEEEEEBTTB-CCSEEEEESSCS-SSC-HH-------------HHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCC
T ss_pred EEEEEEccCC-CceEEEEeCCCc-cce-ee-------------cCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceec
Confidence 4699999998 689999998742 111 00 01113447999999999999999998752 13
Q ss_pred eeEEEEEEEecc--cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 75 RSFFVNLNVVVP--TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 75 ~~~~~~l~v~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
.+..+.|.|... ++.+...+...+.+|+.++|.|.+.+ +.+ .+.|++++..+.... .............|
T Consensus 105 ~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~-~~~--~~~w~k~g~~~~~~~-----~~~~~~~~~~~~~L 176 (316)
T 3vh8_G 105 PSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDI-MFE--HFFLHKEGISKDPSR-----LVGQIHDGVSKANF 176 (316)
T ss_dssp CCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESS-CCS--EEEEEETTCCSCCEE-----EECEEETTEEEEEE
T ss_pred CCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCC-CCc--EEEEEECCCccccce-----eeeeecCCCceEEE
Confidence 345566777543 22222222334889999999999843 233 489999987552110 00001111123459
Q ss_pred EEeeeeecCCEEEEEEcccC
Q psy13371 153 LIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|.++..+|+|.|+|.|.|.
T Consensus 177 ~i~~v~~~D~G~Y~C~a~n~ 196 (316)
T 3vh8_G 177 SIGPMMLALAGTYRCYGSVT 196 (316)
T ss_dssp EECSCCGGGCEEEEEEEECT
T ss_pred EECCCChhhCceEEEEEecC
Confidence 99999999999999999986
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=126.30 Aligned_cols=148 Identities=22% Similarity=0.275 Sum_probs=100.5
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCC-CEEEEEEecCCCc----
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRD-AGVYECQLSTQPV---- 74 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~---- 74 (212)
+.|.|.+ .+.|.+.+.|++++...... +.++... .+..|.|.+++.+| +|.|+|.+.+...
T Consensus 134 v~l~C~~~~~~p~~~v~W~~~~~~~~~~--------~~~~~~~-----~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~ 200 (404)
T 3p3y_A 134 LTLQCNPPPGLPSPVIFWMSSSMEPITQ--------DKRVSQG-----HNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ 200 (404)
T ss_dssp EEECCCCCCCSSCCEEEEECTTSCBCCC--------CSSEEEC-----TTSCEEESSCCSGGGSSCBEEEEECTTTCCEE
T ss_pred EEEEeCCCCCCCCCeEEEeCCCccccCC--------CCcEEEc-----CCCcEEEEeeeeccCCcceEEEEEecccccee
Confidence 3689999 78899999999976422211 2233332 23369999999999 5999999987521
Q ss_pred eeEEEEEEEeccc------ceeeCC----CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec
Q psy13371 75 RSFFVNLNVVVPT------AEILGS----PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144 (212)
Q Consensus 75 ~~~~~~l~v~~~~------~~~~~~----~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 144 (212)
....+.+.+...+ +....+ ....+.+|+.+.|.|.+.+.|.|. +.|++++..+. ..........
T Consensus 201 ~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~--v~W~~~~~~~~----~~~~~~~~~~ 274 (404)
T 3p3y_A 201 QKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPD--IAWYKKGGDLP----SDKAKFENFN 274 (404)
T ss_dssp ECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCE--EEEEETTBCCC----TTTEEEEGGG
T ss_pred ccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCc--EEEEECCEECC----CCcccccccC
Confidence 1222445554321 111111 235688999999999998876665 99999998763 1112222222
Q ss_pred CceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 145 GEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 145 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+ .|.|.++..+|+|.|+|.|.|.
T Consensus 275 ~-----~L~i~~~~~~d~G~Y~C~a~n~ 297 (404)
T 3p3y_A 275 K-----ALRITNVSEEDSGEYFCLASNK 297 (404)
T ss_dssp T-----EEEESSCCGGGCEEEEEEEECS
T ss_pred c-----eEEEccCCHhHCEEEEEEEEeC
Confidence 2 4999999999999999999997
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=116.21 Aligned_cols=152 Identities=20% Similarity=0.227 Sum_probs=102.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+ .+.|++++.... .. ........|.|.+++.+|+|.|+|.+.+. +..+..+
T Consensus 22 v~L~C~~~~----~v~W~~~~~~~~--------------~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 81 (289)
T 3ejj_X 22 VTLRCVSNG----SVEWDGPISPYW--------------TL--DPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTI 81 (289)
T ss_dssp EEEEEECSS----CCEEECSCSSSS--------------EE--CCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEE
T ss_pred EEEEEEeCC----cEEEccCCCceE--------------EE--eccCCccEEEEeeeccccCEEEEEEEeccCCcceeEE
Confidence 468999987 499997653111 00 12234568999999999999999998875 4456777
Q ss_pred EEEEecccc-eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc-CeEEEeeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 80 NLNVVVPTA-EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH-DEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 80 ~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
.|.|..++. ....+....+.+|+.+.|.|.+.+.+ +...+.|++. +..+. ..........+ .|.|.++
T Consensus 82 ~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~-~~~~v~W~~~~~~~~~----~~~~~~~~~~~-----~L~i~~v 151 (289)
T 3ejj_X 82 HLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPA-LKDSVSLMREGGRQVL----RKTVYFFSPWR-----GFIIRKA 151 (289)
T ss_dssp EEEECCSSCSEEESCSEEEEETTSCEEECEEESCGG-GGGSEEEEEGGGEECC----TTCCEEEETTT-----EEEESSC
T ss_pred EEEEeCCCcceecccceEEEecCCceEeEEEccCCC-cceEEEEEecCCeecC----CCccEEECCCC-----CEEEeec
Confidence 888877654 45566777899999999999998653 3334899874 44431 12222233333 3999999
Q ss_pred eecCCEEEEEEcccC----CeeEEEEEEe
Q psy13371 158 ELKDSGKYSCSPSNA----DVASVYVHVL 182 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~----~~~~~~~~v~ 182 (212)
..+|.|.|+|.+.|. ....+.+.|.
T Consensus 152 ~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~ 180 (289)
T 3ejj_X 152 KVLDSNTYVCKTMVNGRESTSTGIWLKVN 180 (289)
T ss_dssp CGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred ccccCEEEEEEEEeCCCccccccEEEEEE
Confidence 999999999999843 2334455554
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.3e-18 Score=127.21 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=98.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEccc-CCCCCEEEEEEecCCC--ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWA-QKRDAGVYECQLSTQP--VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~~--~~~~ 77 (212)
+.|.|.+.|.|.|.|.|+|++. .+... .+.|+... +++|.|.+. +.+|+|.|+|.+.|.. ..+.
T Consensus 26 v~L~C~~~g~P~p~i~W~k~g~--~l~~~-----~~~~~~~~------~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~ 92 (384)
T 3kld_A 26 VKLSCEVKGNPKPHIRWKLNGT--DVDIG-----MDFRYSVV------DGSLLINNPNKTQDAGTYQCIATNSFGTIVSR 92 (384)
T ss_dssp EEECCEEEEESCCEEEEEETTE--ECCC---------CEEEE------TTEEEEESCCHHHHCEEEEEEEEETTEEEECC
T ss_pred EEEEeEecCCCCCEEEEEECCE--ECcCC-----CCccEEEE------CCEEEEcCCCCcccCEEEEEEEEcCcccEEec
Confidence 3689999999999999999873 22211 12244332 125666665 7899999999999863 1233
Q ss_pred EEEEEEecccceee-CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEee
Q psy13371 78 FVNLNVVVPTAEIL-GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 78 ~~~l~v~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
...+.+...+.... ......+.+|+.+.|.|..... .|...+.|++++.++.. ..........+ .|.|.+
T Consensus 93 ~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~---~~~~~~~~~~~-----~L~I~~ 163 (384)
T 3kld_A 93 EAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPH-SGELSYAWIFNEYPSYQ---DNRRFVSQETG-----NLYIAK 163 (384)
T ss_dssp CEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSE-ESCEEEEEEETTEECCC---SSSEEECTTTC-----CEEESS
T ss_pred ceEEEEecccccccCCCCceeEEcCCCeEEecCCCCC-CCCeEEEEEECCCCCEe---eccEEEEcCCC-----cEEEee
Confidence 45555554333222 2344678899999999976422 13345999999876531 11122222233 399999
Q ss_pred eeecCCEEEEEEcccC
Q psy13371 157 AELKDSGKYSCSPSNA 172 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~ 172 (212)
+..+|+|.|+|.|.|.
T Consensus 164 v~~~D~G~Y~C~a~n~ 179 (384)
T 3kld_A 164 VEKSDVGNYTCVVTNT 179 (384)
T ss_dssp CCGGGCEEEEEEEEET
T ss_pred cCHHHCceEEEEEecc
Confidence 9999999999999986
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-17 Score=115.33 Aligned_cols=170 Identities=13% Similarity=0.179 Sum_probs=101.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecc-eee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGS-YTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~-~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+. .+.+.+.|+|..... +..... ... ...+|+.+..+ ..++.+|+|.+++.+|+|.|.|.+.+.
T Consensus 21 v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 98 (252)
T 1oga_E 21 VTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE-KKESFPLTVTSAQKNPTAFYLCASSSR 98 (252)
T ss_dssp EEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS-STTBCCEEECSCCSCCCEEEEEEEESS
T ss_pred EEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEec-CCCEEEEEECcCChhhCEEEEEEEecC
Confidence 36899995 467899999975321 111100 000 12468888642 345678999999999999999999875
Q ss_pred C----ceeEEEEEEEec------cccee-eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeE-
Q psy13371 73 P----VRSFFVNLNVVV------PTAEI-LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV- 140 (212)
Q Consensus 73 ~----~~~~~~~l~v~~------~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~- 140 (212)
. .......|.|.. +|... ..+....+.+|+.+.|.|.+.+.+++.+.+.|++++..+...........
T Consensus 99 ~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~ 178 (252)
T 1oga_E 99 SSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLK 178 (252)
T ss_dssp TTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEE
T ss_pred CccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCccccccccc
Confidence 1 112234566653 22222 22333344578999999999876333346999999987632110000000
Q ss_pred ---EeecCc-eEEEEEEEeeeeec-CCEEEEEEcccC
Q psy13371 141 ---ITEKGE-VTTSYLLIQQAELK-DSGKYSCSPSNA 172 (212)
Q Consensus 141 ---~~~~~~-~~~~~l~i~~~~~~-d~g~y~C~~~n~ 172 (212)
...++. ...+.|.|...... +.|.|+|.+.|+
T Consensus 179 ~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~ 215 (252)
T 1oga_E 179 EQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY 215 (252)
T ss_dssp SCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred ccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcC
Confidence 012222 22345777655543 577999999987
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-17 Score=119.14 Aligned_cols=151 Identities=15% Similarity=0.100 Sum_probs=91.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc------
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV------ 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------ 74 (212)
+.|.|.+. .+.+.+.|+|++.. +...... .+ . ........|.|.+++.+|+|.|+|.+.+...
T Consensus 136 v~L~C~~~-~~~~~~~w~k~g~~-~~~~~~~-----~~--~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~ 204 (316)
T 3vh8_G 136 VILQCWSD-IMFEHFFLHKEGIS-KDPSRLV-----GQ--I--HDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSA 204 (316)
T ss_dssp EEEEEEES-SCCSEEEEEETTCC-SCCEEEE-----CE--E--ETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCC
T ss_pred EEEEEcCC-CCCcEEEEEECCCc-cccceee-----ee--e--cCCCceEEEEECCCChhhCceEEEEEecCCCCccccC
Confidence 46899995 45678899998742 2111000 00 0 0122456899999999999999999998521
Q ss_pred eeEEEEEEEec--ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 75 RSFFVNLNVVV--PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 75 ~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
.+..+.|.|.. .++.+...+...+.+|+.++|.|.+. .+. ..+.|++++..+..... ... .........|
T Consensus 205 ~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~-~~~--~~~~W~k~g~~~~~~~~----~~~-~~~~~~~~~L 276 (316)
T 3vh8_G 205 PSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR-SSY--DMYHLSREGGAHERRLP----AVR-KVNRTFQADF 276 (316)
T ss_dssp CCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEES-SCC--SEEEEEETTSSCCEEEE----CEE-CTTSCEEEEE
T ss_pred CCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECC-CCC--cEEEEEECCCcCCCcee----cee-ccCCceeEEE
Confidence 24556667754 22333222334678899999999986 333 45999999876532110 001 1111122459
Q ss_pred EEeeeeecCCEEEEEEcccC
Q psy13371 153 LIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|.++. |+|.|+|.+.|.
T Consensus 277 ~i~~v~--D~G~Y~C~a~n~ 294 (316)
T 3vh8_G 277 PLGPAT--HGGTYRCFGSFR 294 (316)
T ss_dssp ECC-------CEEEEEEEBT
T ss_pred EcCCcC--CCEEEEEEeecC
Confidence 998888 999999999985
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-19 Score=146.11 Aligned_cols=170 Identities=17% Similarity=0.300 Sum_probs=0.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeee--cCCce--------EEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYT--SDQRF--------SAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~r~--------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+.+.|.+.+.|+|++.. +......... ....+ ....+.......|.|.+++.+|+|.|+|.+.
T Consensus 567 v~l~C~~~~~p~~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 645 (772)
T 3v2a_R 567 VSLWCTADRSTFENLTWYKLGPQ-PLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQ 645 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEeccCCCCCCcEEEEcCCc-ccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEE
Confidence 46899999999999999997742 2111100000 00000 0000112234469999999999999999999
Q ss_pred CC-C--ceeEEEEEEE--ecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC
Q psy13371 71 TQ-P--VRSFFVNLNV--VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145 (212)
Q Consensus 71 ~~-~--~~~~~~~l~v--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 145 (212)
|. + ..+....+.| ..+|.....+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+.... .......+
T Consensus 646 n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~--v~W~k~g~~l~~~~----~~~~~~~~ 719 (772)
T 3v2a_R 646 DRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ--IMWFKDNETLVEDS----GIVLKDGN 719 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCe--EEEEECCeECcCCC----CeEEcCCC
Confidence 84 2 1122334444 4455555555667788999999999999887776 99999998774321 11111111
Q ss_pred ceEEEEEEEeeeeecCCEEEEEEcccC---CeeEEEEEE
Q psy13371 146 EVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181 (212)
Q Consensus 146 ~~~~~~l~i~~~~~~d~g~y~C~~~n~---~~~~~~~~v 181 (212)
..|.|.++..+|+|.|+|.|.|. ...++.+.|
T Consensus 720 ----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 754 (772)
T 3v2a_R 720 ----RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754 (772)
T ss_dssp ---------------------------------------
T ss_pred ----cEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEE
Confidence 35999999999999999999997 333444444
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-18 Score=129.76 Aligned_cols=167 Identities=16% Similarity=0.248 Sum_probs=105.4
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee----eecc------eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL----TVGS------YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~----~~~~------~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.|.|+|+...... .... .....++|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 17 v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 96 (434)
T 1igy_B 17 VKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSDDSAVYYCV 96 (434)
T ss_dssp EEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCGGGCSEECCC
T ss_pred EEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCChHHCEEEEEE
Confidence 36899999874 788999997521111 1000 00012468887644334567899999999999999999
Q ss_pred ecCCC-ceeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEe
Q psy13371 69 LSTQP-VRSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVIT 142 (212)
Q Consensus 69 ~~~~~-~~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~ 142 (212)
+.+.. .......|.|.. +|.....++...+.+|+.+.|.|.+.+. |.| ..+.|++++......... ....
T Consensus 97 ~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p-~~v~W~k~~~~~~~~~~~---~~~~ 172 (434)
T 1igy_B 97 REGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLSSGVHTFP---AVLQ 172 (434)
T ss_dssp CSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSC-CEEEETTTTBCSSEEECC---CEEC
T ss_pred EEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCC-eEEEEeeCCcCCCeEecC---ceec
Confidence 98842 233445677753 2222222333345789999999999886 433 359999888642111000 0111
Q ss_pred ecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 143 EKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 143 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.......+.|.|.+...+| |.|+|.|.|.
T Consensus 173 ~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~ 201 (434)
T 1igy_B 173 SDLYTLSSSVTVPSSPRPS-ETVTCNVAHP 201 (434)
T ss_dssp SSCEEEEEEEEEETTTTTS-SCCEEEEECT
T ss_pred CCcEEEEEEEEEcchhcCC-CcEEEEEEeC
Confidence 1111223568888888888 9999999997
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=120.85 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=99.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+. +.|+++... ++... .......|.|.+++.+|+|.|+|.+.+. +..+..+
T Consensus 22 v~L~C~~~~~----v~W~~~~~~--------------~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~ 81 (292)
T 4dkd_C 22 VTLRCVGNGS----VEWDGPPSP--------------HWTLY--SDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAI 81 (292)
T ss_dssp EEEEEECSSC----CCBCCCCCS--------------SCEEC--CBTTEEEEEESSCCGGGCSCEEECCCC----CCEEE
T ss_pred EEEEEcCCCc----eEEccCCCC--------------ceEEe--ccCceEEEEEcccccccCEEEEEEEccCCCCcceEE
Confidence 3689999884 899965421 11111 2334668999999999999999999985 4456777
Q ss_pred EEEEecccc-eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC-eEEEeeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 80 NLNVVVPTA-EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-EVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 80 ~l~v~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
.|.|..++. ....+....+.+|+.+.|.|.+.+ +.+...+.|++++ ..+. ..........+. |.|.++
T Consensus 82 ~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~----~~~~~~~~~~~~-----L~i~~~ 151 (292)
T 4dkd_C 82 HLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLM----RHTNYSFSPWHG-----FTIHRA 151 (292)
T ss_dssp CCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCC----SSCCEECCSSSC-----CEETTC
T ss_pred EEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccc----cCCcccccCCce-----EEECCC
Confidence 788877664 355566778999999999999986 4422349999874 4331 111222222332 999999
Q ss_pred eecCCEEEEEEcccC
Q psy13371 158 ELKDSGKYSCSPSNA 172 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~ 172 (212)
..+|+|.|+|.+.|.
T Consensus 152 ~~~d~G~Y~C~a~n~ 166 (292)
T 4dkd_C 152 KFIQSQDYQCSALMG 166 (292)
T ss_dssp CGGGCSEEEEEECST
T ss_pred CHHHCeEEEEEEEeC
Confidence 999999999999986
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-17 Score=128.03 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=103.4
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeeccee---eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-ce
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYT---YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VR 75 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~ 75 (212)
+.|.|.+ .+.|.+.+.|+|++........... ....+|..+. .+.+|.|.+++.+|+|.|+|.+.+.. ..
T Consensus 384 v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~ 458 (581)
T 3o3u_N 384 LVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVL-----PNGSLFLPAVGIQDEGIFRCQAMNRNGKE 458 (581)
T ss_dssp EEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEEC-----TTSCEEESSCCGGGCEEEEEEEECTTSCE
T ss_pred EEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEc-----CCceEEEeccccccCeEEEEEEEcCCCce
Confidence 4689999 7889999999998641111100000 0012344443 23389999999999999999999863 33
Q ss_pred -eEEEEEEEeccc--ceeeCCCceeeeCCCcE-EEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCcee-E-Ee--ecC-
Q psy13371 76 -SFFVNLNVVVPT--AEILGSPDLHVDEGSTI-NLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVS-V-IT--EKG- 145 (212)
Q Consensus 76 -~~~~~l~v~~~~--~~~~~~~~~~~~~g~~~-~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~-~-~~--~~~- 145 (212)
...+.|.|..++ +.+..+.. .+..++.. .|.|.+.+. |.|. +.|++++..+.......... . .. ..|
T Consensus 459 ~~~~~~l~V~~~~~~p~i~~~~~-~~~~~~~~~~l~C~~~~~~P~~~--i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~ 535 (581)
T 3o3u_N 459 TKSNYRVRVYQIPGKPEIVDSAS-ELTAGVPNKVGTCVSEGSYPAGT--LSWHLDGKPLVPNEKGVSVKEQTRRHPETGL 535 (581)
T ss_dssp EEEEEEEEEEBCCCCCEEESCCS-EECTTSCEEEEEEEEEEEBSCCE--EEEEETTEECCTTSTTEEEEEEEEECTTTCC
T ss_pred eEEEEEEEEEcCCCCCEEEcCCc-ccccCCceeEEEEECCCCCCCCe--EEEEECCEECCCCCCeEEEEeeeEEcCCCce
Confidence 567788887644 23333333 35555554 569999874 6555 99999998874322111000 1 11 222
Q ss_pred ceEEEEEEEeeee-ecCCEEEEEEcccC
Q psy13371 146 EVTTSYLLIQQAE-LKDSGKYSCSPSNA 172 (212)
Q Consensus 146 ~~~~~~l~i~~~~-~~d~g~y~C~~~n~ 172 (212)
....++|.|..+. .++.|.|+|.+.|.
T Consensus 536 y~~~s~L~i~~~~~~d~~~~y~C~~~n~ 563 (581)
T 3o3u_N 536 FTLQSELMVTPARGGDPRPTFSCSFSPG 563 (581)
T ss_dssp EEEEEEEEECCCTTSCSCCCEEEEEECS
T ss_pred EEEEEEEEEEeccccCCCceEEEEEecc
Confidence 2234679998887 55588999999997
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=121.04 Aligned_cols=159 Identities=14% Similarity=0.180 Sum_probs=101.2
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCE---EEEEEecCCC-ce
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG---VYECQLSTQP-VR 75 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~~~~~~-~~ 75 (212)
+.|.|.+ .+.|.+.+.|++++........ ....+.|+... .+..|.|.+++.+|+| .|+|.+.+.. ..
T Consensus 118 v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~ 190 (395)
T 1bih_A 118 FQLDCVLPNAYPKPLITWKKRLSGADPNAD--VTDFDRRITAG-----PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE 190 (395)
T ss_dssp EEECCCCCEEESCCEEEEEEEETTSCGGGC--CCCCCTTEEEC-----TTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred EEEEecCCCCCCCCeEEEEecCCCcCcccc--cccccccEEEc-----CCCcEEEEEEeeccCCCceEEEEEEEecccce
Confidence 3689996 7789999999998621111000 00013344443 2337999999999999 9999999853 22
Q ss_pred eEEEEE---EEeccc--------ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec
Q psy13371 76 SFFVNL---NVVVPT--------AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144 (212)
Q Consensus 76 ~~~~~l---~v~~~~--------~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 144 (212)
...... .+...+ .....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+...... +......
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~--i~W~~~g~~~~~~~~~--~~~~~~~ 266 (395)
T 1bih_A 191 EVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGY--PNYFKNGKDVNGNPED--RITRHNR 266 (395)
T ss_dssp CEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSCCC--CEEEETTEECCCCTTS--SEESCSS
T ss_pred EEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCCCe--EEEEECCEEcCCCCce--eEEEEec
Confidence 222111 111100 111134567889999999999998887776 9999999877432211 1111101
Q ss_pred CceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 145 GEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 145 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.. ...|.|.++..+|+|.|+|.|.|.
T Consensus 267 ~~--~~~L~i~~~~~~d~G~Y~C~a~n~ 292 (395)
T 1bih_A 267 TS--GKRLLFKTTLPEDEGVYTCEVDNG 292 (395)
T ss_dssp ST--TSEEEESSCCGGGCEEEEEEECCS
T ss_pred CC--CceEEEccCChhhCEEEEEEEEeC
Confidence 00 024999999999999999999997
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=125.21 Aligned_cols=151 Identities=22% Similarity=0.308 Sum_probs=102.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCC-CCCEEEEEEecCCC--ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQK-RDAGVYECQLSTQP--VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~--~~~~ 77 (212)
+.|.|.+.|.|.+.+.|+|++. .+... .+.|+... +.+|.|.++.. +|+|.|+|.+.+.. ..+.
T Consensus 25 v~l~C~~~g~p~~~v~W~k~g~--~~~~~-----~~~~~~~~------~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~ 91 (382)
T 1cs6_A 25 VTLTCRARANPPATYRWKMNGT--ELKMG-----PDSRYRLV------AGDLVISNPVKAKDAGSYQCVATNARGTVVSR 91 (382)
T ss_dssp EEECCEEEEESCCEEEEEETTE--ECCCS-----TTSSEEEE------TTEEEEESCCHHHHCEEEEEEEEETTEEEECC
T ss_pred EEEEEEecCCCCCEEEEEECCE--ECCcC-----CCccEEee------CCeEEEecccccccCEEEEEEEEcCCcEEEec
Confidence 3689999999999999999773 22211 13455543 23789999987 99999999999853 1233
Q ss_pred EEEEEEeccccee-eCCCceeeeCCCcEEEEeEEe-eCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe
Q psy13371 78 FVNLNVVVPTAEI-LGSPDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 78 ~~~l~v~~~~~~~-~~~~~~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.+.+.|...+... ..+....+.+|+.+.|.|.+. +.|.+ .+.|++++..+.... ..+....... ..|.|.
T Consensus 92 ~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~--~i~W~~~~~~~~~~~--~~~~~~~~~~----~~L~i~ 163 (382)
T 1cs6_A 92 EASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPAL--SYRWLLNEFPNFIPA--DGRRFVSQTT----GNLYIA 163 (382)
T ss_dssp CEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCC--EEEEEESSTTCBCCC--CSSEEECTTT----CCEEES
T ss_pred ceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCc--EEEEEECCCcccccc--CceEEEecCc----eEEEEE
Confidence 4566665544332 224456789999999999864 34444 599999987543211 1122222221 139999
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
++..+|+|.|+|.+.|.
T Consensus 164 ~~~~~d~G~Y~C~~~n~ 180 (382)
T 1cs6_A 164 KTEASDLGNYSCFATSH 180 (382)
T ss_dssp SCCGGGCEEEEEEEEEE
T ss_pred eeCcccCeeEEEEEEEc
Confidence 99999999999999876
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.9e-17 Score=115.78 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=92.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--Cce---
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PVR--- 75 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~--- 75 (212)
+.|.|.+. |.+.+.| ++. .+ . .......|.|..+..+|.|.|+|.+.+. +..
T Consensus 116 v~l~C~~~--p~~~i~W--~g~-~~-~-----------------~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~ 172 (265)
T 2oz4_A 116 VTVKCEAH--PRAKVTL--NGV-PA-Q-----------------PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHK 172 (265)
T ss_dssp EEEEEECC--TTSEEEE--SSC-SS-S-----------------CCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEE
T ss_pred EEEEEEcc--CCCEEEE--CCE-Ec-c-----------------CCCCcEEEEEccccccCCceEEEEEEcCCCCCcccc
Confidence 36899998 8899999 332 22 1 1113346889999999999999999752 322
Q ss_pred eEEEEEEEecccceeeC--CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEE
Q psy13371 76 SFFVNLNVVVPTAEILG--SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153 (212)
Q Consensus 76 ~~~~~l~v~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 153 (212)
+..+.|.|..+|..... +....+.+|+.+.|.|.+.+.|.|. +.|++++.... ..+. +.
T Consensus 173 s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~--i~W~~~~~~~~------------~~g~-----~~ 233 (265)
T 2oz4_A 173 NQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPE--LKCLKDGTFPL------------PIGE-----SV 233 (265)
T ss_dssp EEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCE--EEEEETTTEEC------------CTTS-----CE
T ss_pred cccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCe--EEEEECCcccC------------CCCc-----EE
Confidence 25677888776644332 4566889999999999999988776 99999987221 1111 22
Q ss_pred EeeeeecCCEEEEEEcccCC
Q psy13371 154 IQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 154 i~~~~~~d~g~y~C~~~n~~ 173 (212)
.+..+|+|.|+|.|.|..
T Consensus 234 --~v~~~d~G~Y~C~a~N~~ 251 (265)
T 2oz4_A 234 --TVTRDLEGTYLCRARSTQ 251 (265)
T ss_dssp --ECCGGGCEEEEEEEEETT
T ss_pred --EeehhhCeEEEEEEECCC
Confidence 367799999999999983
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=123.55 Aligned_cols=140 Identities=11% Similarity=0.115 Sum_probs=102.0
Q ss_pred CeeEeeeCCCCCceE-----EEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-c
Q psy13371 1 MLHQRKLKGLLPTRV-----SWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-V 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v-----~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~ 74 (212)
+.|.|.+.+ |.|.+ .|+|++. ... ......|.|.+++. |+| |+|.+.+.+ .
T Consensus 17 v~L~C~~~g-p~p~~~~~~~~w~k~~~--~~~------------------~~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~ 73 (450)
T 1z7z_I 17 VLVTCSTSC-DQPMLLGIETPLPKKEL--LLP------------------GNNRKVYELSNVQE-DSQ-PMCYSNCPDGQ 73 (450)
T ss_dssp EEEEEECCS-SCCCEEEECSSSCEEEC--CSS------------------TTTEEEEEEEEECS-CBC-CEEEEEETTEE
T ss_pred EEEEEEccC-CCcccccccceeeecce--Eec------------------CCCceEEEEEeccc-CCe-eEEEEeCCCCc
Confidence 469999999 88888 8988752 111 11233788999987 999 999997643 4
Q ss_pred eeEEEEEEEeccccee-eCCCceeeeCCCcEEEEeEEeeCCCC-CceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 75 RSFFVNLNVVVPTAEI-LGSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 75 ~~~~~~l~v~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
.+..+.|.|..+|... ..+....+.+|+.+.|.|.+.+.+.| ...+.|++++..+....... ......|
T Consensus 74 ~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~---------~~~~~~L 144 (450)
T 1z7z_I 74 STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG---------EPAEVTT 144 (450)
T ss_dssp EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT---------TTEEEEE
T ss_pred ceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc---------cccceEE
Confidence 5566778887766544 45555778999999999999887654 11489999998875432110 0112359
Q ss_pred EEeeeeecCCEEEEEEcccC
Q psy13371 153 LIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|.++..+|+|.|+|.|.|.
T Consensus 145 ~i~~~~~~d~G~Y~C~a~n~ 164 (450)
T 1z7z_I 145 TVLVRRDHHGANFSCRTELD 164 (450)
T ss_dssp EEECCSSCSSCEEEEEEEEE
T ss_pred EEEeeccccCceEEEEEEcc
Confidence 99999999999999999986
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-15 Score=104.77 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=97.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce---eeeecceeeecCCceEEEee-CCCCeEEEEEcccCCCCCEEEEEEecCCCc--
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH---ILTVGSYTYTSDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYECQLSTQPV-- 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~---~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-- 74 (212)
+.|.|.+.+.+ +.|.|+|..... .+.........++|+.+..+ ...+..+|+|.+++.+|+|.|.|.+.+...
T Consensus 19 v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~ 97 (207)
T 1ypz_E 19 SALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISE 97 (207)
T ss_dssp EEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBCCCT
T ss_pred EEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCCccc
Confidence 36899998765 489999975321 11111111123579998865 446788999999999999999999987420
Q ss_pred ----------eeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec
Q psy13371 75 ----------RSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144 (212)
Q Consensus 75 ----------~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 144 (212)
......|.|....... .++...+..+ .+.|.|.+.+.+++.+.+.|.++ ..+... . .......+
T Consensus 98 p~~~~~~~~~~~~~t~L~V~~~~~~~-~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~-~--~~~~~~~~ 171 (207)
T 1ypz_E 98 GYELGTDKLVFGQGTQVTVEPKSQPP-AKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKIVEF-D--PAIVISPS 171 (207)
T ss_dssp TCCCCCCCCEECCCEEEEEECCCCCC-CCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEEEEC-C--CEEEECTT
T ss_pred ccccccceeeecCccEEEEccCCCCC-CCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-CcccCC-c--cceEEcCC
Confidence 1123567776422111 1222333222 37999999876443356999998 665321 1 11122333
Q ss_pred CceEEEEEEEeee-eecCCEEEEEEcccCC
Q psy13371 145 GEVTTSYLLIQQA-ELKDSGKYSCSPSNAD 173 (212)
Q Consensus 145 ~~~~~~~l~i~~~-~~~d~g~y~C~~~n~~ 173 (212)
+. +.+... ..++.|.|+|.+.|..
T Consensus 172 g~-----y~~~~~~~~~~~~~ytC~v~~~~ 196 (207)
T 1ypz_E 172 GK-----YSAVKLGQYGDSNSVTCSVQHNS 196 (207)
T ss_dssp SS-----EEEEECEEESSTTTCEEEEEETT
T ss_pred Cc-----EEEEEeecccCCCcEEEEEEECC
Confidence 43 222233 3367899999999874
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=123.53 Aligned_cols=160 Identities=10% Similarity=0.116 Sum_probs=99.6
Q ss_pred eeEeeeCCC-CCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-ceeEE
Q psy13371 2 LHQRKLKGL-LPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFF 78 (212)
Q Consensus 2 ~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~ 78 (212)
.|.|.+.|. |.| .|.|+|++............ .++++... ..|.|.++..+| |.|+|.+.+.. .....
T Consensus 142 ~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~-------s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~ 212 (444)
T 1igt_B 142 TLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL-QSDLYTLS-------SSVTVTSSTWPS-QSITCNVAHPASSTKVD 212 (444)
T ss_dssp EEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEE-ETTEEEEE-------EEEEECSTTTTT-SCCEEEEEETTTTEEEE
T ss_pred EEEEEEcceeCCCcEEEEecCCCCCCeEecCccc-cCCcEEEE-------EEEEEchhhcCC-CeEEEEEEeCCCCcceE
Confidence 689999985 776 99999887421011010111 11333332 368999999999 99999999863 22223
Q ss_pred EEEEEe------------------cccceeeCCCcee--eeCCCcEEEEeEEeeCC--CCCceEEEEEcCeEEEeeCCCC
Q psy13371 79 VNLNVV------------------VPTAEILGSPDLH--VDEGSTINLTCSIKYSP--EPPAYIFWYHHDEVISYDSSRG 136 (212)
Q Consensus 79 ~~l~v~------------------~~~~~~~~~~~~~--~~~g~~~~l~C~~~~~~--~p~~~v~W~~~~~~~~~~~~~~ 136 (212)
..+.+. .++.....++... +..|+.++|.|.+.+.+ .+...+.|++++..+.... .
T Consensus 213 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~--~ 290 (444)
T 1igt_B 213 KKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ--T 290 (444)
T ss_dssp EECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTT--C
T ss_pred EEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcc--c
Confidence 333221 1222222233322 58899999999999874 3445699999997763211 1
Q ss_pred ceeEEeecC-ceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 137 GVSVITEKG-EVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 137 ~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.......++ ....+.|.|.++..+|.|.|+|.|.|.
T Consensus 291 ~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 327 (444)
T 1igt_B 291 QTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNK 327 (444)
T ss_dssp BCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECT
T ss_pred ccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcC
Confidence 111111122 123457999999999999999999997
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=117.68 Aligned_cols=158 Identities=13% Similarity=0.170 Sum_probs=100.5
Q ss_pred CeeEeeeCCCCCc---eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-ce-
Q psy13371 1 MLHQRKLKGLLPT---RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VR- 75 (212)
Q Consensus 1 ~~l~C~~~~~p~~---~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~- 75 (212)
+.|.|.+.+.|.+ .|.|+|++. .+..... .....+..|.|.+++.+|+|.|+|.+.+.. ..
T Consensus 104 v~L~C~~~g~~~~~~~~v~W~k~g~--~l~~~~~------------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 169 (450)
T 1z7z_I 104 LTLRCQVEGGAPRANLTVVLLRGEK--ELKREPA------------VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQG 169 (450)
T ss_dssp EEEEEEEECCBCGGGEEEEEEETTE--EEEEEEC------------CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGT
T ss_pred EEEEEEecCCCCCcCcEEEEeeCCE--Eeecccc------------cccccceEEEEEeeccccCceEEEEEEcccCCCC
Confidence 3689999999887 999999873 2221110 012234689999999999999999999751 11
Q ss_pred -------eEEEEEEEeccc---ceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeec
Q psy13371 76 -------SFFVNLNVVVPT---AEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144 (212)
Q Consensus 76 -------~~~~~l~v~~~~---~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 144 (212)
+....+.+...+ +....+ ..+.+|+.+.|.|.+.+. |.+...+.|++++..+.. .... .
T Consensus 170 ~~~~~~~s~~~~l~v~~~~~~~p~~~~~--~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~------~~~~--~ 239 (450)
T 1z7z_I 170 LELFENTSAPYQLQTFVLPATPPQLVSP--RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP------TVTY--G 239 (450)
T ss_dssp SCEEEEECCCEECEECCCCSSCCEEECC--SEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC------EEEE--E
T ss_pred ceEEeeccCccceeeeccCCCCCEecCc--eeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc------eEEe--c
Confidence 122344443321 111111 578899999999999987 533556999999987631 1111 1
Q ss_pred CceEEEEEEEeeeeecCCE--EEEEEcccCC---eeEEEEEEee
Q psy13371 145 GEVTTSYLLIQQAELKDSG--KYSCSPSNAD---VASVYVHVLN 183 (212)
Q Consensus 145 ~~~~~~~l~i~~~~~~d~g--~y~C~~~n~~---~~~~~~~v~~ 183 (212)
+......+.+ ++..+|.| .|+|.+.|.. .....+.|..
T Consensus 240 ~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~ 282 (450)
T 1z7z_I 240 NDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282 (450)
T ss_dssp TTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEec
Confidence 2211112233 66889999 9999999983 2334455543
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-17 Score=121.55 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=95.4
Q ss_pred CeeEeeeCCC-CC-ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-ceeE
Q psy13371 1 MLHQRKLKGL-LP-TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~ 77 (212)
+.|.|.+.|. |. +.|.|+|++..............++++... ..|.|.++..+| |.|+|.+.+.. ....
T Consensus 138 v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~-------s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~ 209 (344)
T 1za6_B 138 AALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLS-------SVVTVPSSSLGT-QTYICNVNHKPSNTKV 209 (344)
T ss_dssp EEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEE-------EEEEEETTHHHH-BCEEEEEEEGGGTEEE
T ss_pred EEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEE-------EEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence 3689999986 65 799999877421011111111233455443 278999998888 99999999853 2212
Q ss_pred EEEEE------------------------EecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeC
Q psy13371 78 FVNLN------------------------VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS 133 (212)
Q Consensus 78 ~~~l~------------------------v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~ 133 (212)
...+. +..+|.....++......|+.+.|.|.+.+.+++.+.+.|+++|..+....
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~ 289 (344)
T 1za6_B 210 DKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK 289 (344)
T ss_dssp EEEECCCCC--------------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEE
T ss_pred eEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcE
Confidence 22111 112232222222222234667999999998654556799999998763211
Q ss_pred CCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 134 SRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 134 ~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
. .......++. ...+.|.+.....+|.|.|+|.|.|+
T Consensus 290 ~--~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~ 327 (344)
T 1za6_B 290 T--TPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE 327 (344)
T ss_dssp E--CCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECT
T ss_pred e--cceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcC
Confidence 0 1112222332 22345677666667899999999997
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=121.55 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=98.2
Q ss_pred CeeEeeeCCCCC---ceEEEEeeCcceeeeecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-c
Q psy13371 1 MLHQRKLKGLLP---TRVSWIRHRDIHILTVGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-V 74 (212)
Q Consensus 1 ~~l~C~~~~~p~---~~v~W~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~ 74 (212)
+.|.|.+.|.+. +.|.| +++ ....... .....++.+. ....|.|.+++.+|+|.|+|.+.+.. .
T Consensus 265 v~L~C~~~g~~p~~~~~i~W-~~~--~~~~~~~~~~~~~~~g~~~-------~~~~L~I~~~~~~d~G~Y~C~a~n~~~~ 334 (475)
T 1iga_A 265 ANLTCTLTGLRDASGVTFTW-TPS--SGKSAVQGPPERDLCGCYS-------VSSVLPGCAEPWNHGKTFTCTAAYPESK 334 (475)
T ss_pred eEEEEEEEcccCCCceEEEE-CCC--CcCCccccCceECCCCCEE-------EEEEEEEchHHhccCCcEEEEEEcCCCC
Confidence 469999998743 69999 433 2221110 0001112222 23479999999999999999999863 2
Q ss_pred eeEEEEEEE---ecccceee-CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEe---ecCc-
Q psy13371 75 RSFFVNLNV---VVPTAEIL-GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT---EKGE- 146 (212)
Q Consensus 75 ~~~~~~l~v---~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~- 146 (212)
......+.+ ..+|.... .+....+..|+.+.|.|.+.+.+++.+.+.|+++|..+............. .++.
T Consensus 335 ~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~ 414 (475)
T 1iga_A 335 TPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTF 414 (475)
T ss_pred CceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcE
Confidence 222333322 33443333 233334678999999999998754555699999998774221000001111 2222
Q ss_pred eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 147 VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+.|.|.....+|.|.|+|.|.|+
T Consensus 415 ~~~s~L~i~~~~~~~~g~YtC~a~n~ 440 (475)
T 1iga_A 415 AVTSILRVAAEDWKKGDTFSCMVGHE 440 (475)
T ss_pred EEEEEEEEChHHhcCCCEEEEEEEcC
Confidence 23356778777778899999999997
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=118.66 Aligned_cols=159 Identities=13% Similarity=0.183 Sum_probs=97.4
Q ss_pred CeeEeeeCCC-C-CceEEEEeeCcceeeeecce---eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCce
Q psy13371 1 MLHQRKLKGL-L-PTRVSWIRHRDIHILTVGSY---TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR 75 (212)
Q Consensus 1 ~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 75 (212)
+.|.|.+.+. | .+.|.|+|++. .+..+.. ....++++... ..|.|.++..+|+|.|+|.+.+...
T Consensus 27 v~L~C~~~g~~P~~~~v~W~k~g~--~l~~~~~~~~~~~~~g~~~~~-------s~l~i~~~~~~d~g~Y~C~a~n~~~- 96 (323)
T 2wqr_A 27 IQLLCLVSGYTPGTIQITWLEDGQ--VMDVDLSTASTTQEGELASTQ-------SELTLSQKHWLSDRTYTCQVTYQGH- 96 (323)
T ss_dssp EEEEEEEEEECCCCEEEEEEETTE--ECCGGGEEEEEEEETTEEEEE-------EEEEEEHHHHHTTCCEEEEEEETTE-
T ss_pred EEEEEEEeCeECCCeEEEEEECCE--EcccceecCCcCccCCcEEEE-------EEEEEcHHHcCCCCcEEEEEEeCCC-
Confidence 3689999986 4 58999999773 2221111 11113444333 2688888888899999999998631
Q ss_pred eEEEEEEE--e---ccc-ceeeCCCceeeeCCCcEEEEeEEeeCC-CC-CceEEEEEcC-eEEEeeCCCCceeEEeecCc
Q psy13371 76 SFFVNLNV--V---VPT-AEILGSPDLHVDEGSTINLTCSIKYSP-EP-PAYIFWYHHD-EVISYDSSRGGVSVITEKGE 146 (212)
Q Consensus 76 ~~~~~l~v--~---~~~-~~~~~~~~~~~~~g~~~~l~C~~~~~~-~p-~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~ 146 (212)
.....+.+ . ..+ ..+..+....+.+|+.+.|.|.+.+.+ .| ...+.|++++ ..+... ........++.
T Consensus 97 ~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~---~~~~~~~~~g~ 173 (323)
T 2wqr_A 97 TFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS---TRKEEKQRNGT 173 (323)
T ss_dssp EEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCC---CCEEEECTTSC
T ss_pred CcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccc---cCCCccCCCCC
Confidence 22222211 1 122 223344445678899999999998764 33 1369999975 433110 00111111221
Q ss_pred -eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 147 -VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 147 -~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+.|.|.++..+|.|.|+|.|.|.
T Consensus 174 ~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 200 (323)
T 2wqr_A 174 LTVTSTLPVGTRDWIEGETYQCRVTHP 200 (323)
T ss_dssp EEEEEEEECCHHHHHTTCCEEEEEECT
T ss_pred EEEEEEEEECHHHccCCCCEEEEEECC
Confidence 13356999999999999999999997
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-16 Score=117.24 Aligned_cols=162 Identities=11% Similarity=0.133 Sum_probs=99.9
Q ss_pred CeeEeeeCCC-CC---ceEEEEeeCcceeeeec--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc
Q psy13371 1 MLHQRKLKGL-LP---TRVSWIRHRDIHILTVG--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV 74 (212)
Q Consensus 1 ~~l~C~~~~~-p~---~~v~W~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 74 (212)
+.|.|.+.|. |. ..|.|+|+++ .+.... ......++++.. ...|.|..++.+|+|.|+|.+.+...
T Consensus 186 v~L~C~~~g~~P~p~~~~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~-------~s~L~I~~~~~~D~g~Y~C~~~~~~~ 257 (376)
T 2aty_A 186 PKVTCVVVDISKDDPEVQFSWFVDDV-EVHTAQTQPREEQFNSTFRS-------VSELPIMHQDWLNGKEFKCRVNSAAF 257 (376)
T ss_pred eEEEEEEeccccCCCccEEEEEECCc-cccCcccCCCCcccCCcEEE-------EEEEEechHhccCCCEEEEEEecCCC
Confidence 3699999987 33 3799999884 221110 001111223322 33799999999999999999988531
Q ss_pred -eeEEEEE----EEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eE
Q psy13371 75 -RSFFVNL----NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VT 148 (212)
Q Consensus 75 -~~~~~~l----~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~ 148 (212)
......+ .+..+|.....+.......|+.++|.|.+.+.+++.+.+.|+++++.+..... .......++. ..
T Consensus 258 ~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~--~~~~~~~dgty~~ 335 (376)
T 2aty_A 258 PAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKN--TQPIMNTNESYFV 335 (376)
T ss_pred CCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEe--CCceECCCCCEEE
Confidence 1221222 23334444444444444558899999999987556667999999987632111 1112233332 23
Q ss_pred EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.|.+.....+|.|.|+|.|.|+
T Consensus 336 ~s~L~i~~~~~~~~~~YtC~v~h~ 359 (376)
T 2aty_A 336 YSKLNVQKSNWEAGNTFTCSVLHE 359 (376)
T ss_pred EEEEEEcHHHhCCCCcEEEEEEeC
Confidence 355777766667899999999987
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-17 Score=114.42 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=94.1
Q ss_pred CeeEeeeCCCCC---ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-cee
Q psy13371 1 MLHQRKLKGLLP---TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~ 76 (212)
+.|.|.+.+.+. +.|.| ++...............++++. ....|+|.+++.+|+|.|+|.+.+.. ...
T Consensus 22 v~L~C~~~g~~p~~~~~v~W-~~~~~~~~~~~~~~~~~~g~~~-------~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~ 93 (214)
T 1ow0_A 22 ANLTCTLTGLRDASGVTFTW-TPSSGKSAVQGPPERDLCGCYS-------VSSVLPGCAEPWNHGKTFTCTAAYPESKTP 93 (214)
T ss_dssp CCCEEEETTCCSCCCCCCCB-SSCSSCCCEECCCCCCSTTCCC-------EEEECTTTHHHHHHTCEEEEEECCSSCSSC
T ss_pred cEEEEEEeeeECCCCeEEEE-cCCCCCCcccCCceECCCCcEE-------EEEEEEEeHHHcCCCCeEEEEEecCCCCCc
Confidence 469999999753 69999 5432111000000001112221 23478899999999999999999863 122
Q ss_pred EEEEEE---Eecccce-eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEe---ecCce-E
Q psy13371 77 FFVNLN---VVVPTAE-ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT---EKGEV-T 148 (212)
Q Consensus 77 ~~~~l~---v~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~-~ 148 (212)
....+. +..+|.. +..+....+..|+.+.|.|.+.+.+++.+.+.|++++..+............. .++.. .
T Consensus 94 ~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~ 173 (214)
T 1ow0_A 94 LTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAV 173 (214)
T ss_dssp EEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEE
T ss_pred eeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEE
Confidence 222332 1233433 23333334667889999999998654445799999998764221000011222 23322 2
Q ss_pred EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.|.+.....++.|.|+|.|.|+
T Consensus 174 ~s~l~v~~~~~~~~~~ytC~v~n~ 197 (214)
T 1ow0_A 174 TSILRVAAEDWKKGDTFSCMVGHE 197 (214)
T ss_dssp EEEEEEEHHHHHHTCCEEEEEECT
T ss_pred EEEEEECHHHccCCCEEEEEEECC
Confidence 234555444445689999999997
|
| >3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=113.05 Aligned_cols=169 Identities=14% Similarity=0.194 Sum_probs=101.6
Q ss_pred CeeEeeeCC--CCCceEEEEeeCccee----eeecc---e---eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKG--LLPTRVSWIRHRDIHI----LTVGS---Y---TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~--~p~~~v~W~~~~~~~~----~~~~~---~---~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+++ .+...+.|+|...... ..... . .....+|+.+..+...++.+|+|.+++.+|+|.|.|.
T Consensus 41 v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 120 (267)
T 3u1s_H 41 VKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTADDTAIYYCL 120 (267)
T ss_dssp EEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCChhhCEEEEEE
Confidence 368999976 3457999998653221 11110 0 0112479999876666788999999999999999999
Q ss_pred ecCC-------C------------c-------eeEEEEEEEec----ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCc
Q psy13371 69 LSTQ-------P------------V-------RSFFVNLNVVV----PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPA 118 (212)
Q Consensus 69 ~~~~-------~------------~-------~~~~~~l~v~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~ 118 (212)
+.+. . . ......|.|.. +|.....++......|+.+.|.|.+.+..++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~~~~p~~~ 200 (267)
T 3u1s_H 121 TGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 200 (267)
T ss_dssp EEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEEEEEEEBSSCC
T ss_pred ECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEEEEeEEECCCe
Confidence 8620 0 0 11123566642 122221122223457899999999987544355
Q ss_pred eEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 119 YIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 119 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.+.| ++..+...... .......++.. ..+.|.|.....+| +.|+|.+.|+.
T Consensus 201 ~v~W--~~~~~~~~~~~-~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~ 252 (267)
T 3u1s_H 201 TVSW--NSGALTSGVHT-FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 252 (267)
T ss_dssp EEEE--GGGTBCTTEEE-CCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGG
T ss_pred EEEE--CCcccCCCEEe-CCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECC
Confidence 7899 55433110000 00112222322 23568888777778 99999999974
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.8e-16 Score=110.57 Aligned_cols=135 Identities=16% Similarity=0.207 Sum_probs=90.6
Q ss_pred CeeEeeeCC-CCCc--eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEc---ccCCCCCEE--EEEEecCC
Q psy13371 1 MLHQRKLKG-LLPT--RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIK---WAQKRDAGV--YECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~---~~~~~d~G~--Y~C~~~~~ 72 (212)
+.|.|.+.+ .|.| .+.|+|++. .+.. .. . .... .+.+. .++.+|+|. |+|.+.+.
T Consensus 21 v~l~C~~~g~~p~p~~~v~W~k~~~--~l~~--~~---------~--~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~ 83 (265)
T 2oz4_A 21 GTVVCSLDGLFPVSEAQVHLALGDQ--RLNP--TV---------T--YGND--SFSAKASVSVTAEDEGTQRLTCAVILG 83 (265)
T ss_dssp EEEEEEEESCSCGGGCEEEEEETTE--ECCC--EE---------E--ECSS--EEEEEEEEEECGGGCEEEEEEEEEEET
T ss_pred EEEEEEccCCCCCcceEEEEEeCCE--ECCc--eE---------e--eCCC--eEEEEeecccccccCCcceEEEEEecC
Confidence 369999999 7877 999999873 2211 10 0 0011 33333 447888885 99999986
Q ss_pred -CceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEE
Q psy13371 73 -PVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151 (212)
Q Consensus 73 -~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (212)
+..+..+.|.|...+.....+....+.+|+.+.|.|.+. |.| .+.| ++..+.. .+ ..+.
T Consensus 84 ~~~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~--~i~W--~g~~~~~---~~-----------~~~~ 143 (265)
T 2oz4_A 84 NQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRA--KVTL--NGVPAQP---LG-----------PRAQ 143 (265)
T ss_dssp TEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTS--EEEE--SSCSSSC---CS-----------SEEC
T ss_pred CCCcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCC--EEEE--CCEEccC---CC-----------CcEE
Confidence 455667788887643333334455688899999999986 444 4999 6665511 10 0123
Q ss_pred EEEeeeeecCCEEEEEEcccC
Q psy13371 152 LLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 152 l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|.+.....+|.|.|+|.|.|.
T Consensus 144 l~i~~~~~~~~g~Y~C~a~n~ 164 (265)
T 2oz4_A 144 LLLKATPEDNGRSFSCSATLE 164 (265)
T ss_dssp CEEECCGGGTTEEEEEEEEEE
T ss_pred EEEccccccCCceEEEEEEcC
Confidence 888888999999999999863
|
| >1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-15 Score=103.21 Aligned_cols=162 Identities=18% Similarity=0.175 Sum_probs=98.3
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce---eeeecceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH---ILTVGSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~---~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.+.+ .+.+.|+|..... .+....... ...+|+.+..+...+..+|+|.+++.+|+|.|.|.+.+..
T Consensus 19 vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~ 98 (229)
T 1hxm_A 19 ATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTLG 98 (229)
T ss_dssp EEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECCC
T ss_pred EEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEEecCC
Confidence 36999998765 5789999875311 111111111 1257999986656678899999999999999999987642
Q ss_pred -------c--eeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec
Q psy13371 74 -------V--RSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144 (212)
Q Consensus 74 -------~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 144 (212)
. ......|.|........ ++...+..+ ...|.|.+.+.+++.+.+.|.++ +.+... . .......+
T Consensus 99 ~~~~~~~~~~~g~gt~L~V~~~~~~~~-~P~v~~~~~-~~~L~C~~~g~~P~~i~v~W~~~-~~~~~~-~--~~~~~~~d 172 (229)
T 1hxm_A 99 MGGEYTDKLIFGKGTRVTVEPRSQPHT-KPSVFVMKN-GTNVACLVKEFYPKDIRINLVSS-KKITEF-D--PAIVISPS 172 (229)
T ss_dssp CSSSCCCCCEEBCCEEEEEECCSCCCB-CCEEEEEEE-TTEEEEEEESCBSSCCEEEEECS-SEEEEC-C--CEEEECTT
T ss_pred CcccccchhhcCccEEEEEeccCCCCc-CCcEEEcCC-CCeEEEEEEEEeCCCEEEEEecC-CEEecC-c--cceEECCC
Confidence 1 11234667764211111 122222222 25899999876544457999998 665421 1 11222333
Q ss_pred CceEEEEEEEeee-eecCCEEEEEEcccCC
Q psy13371 145 GEVTTSYLLIQQA-ELKDSGKYSCSPSNAD 173 (212)
Q Consensus 145 ~~~~~~~l~i~~~-~~~d~g~y~C~~~n~~ 173 (212)
+. +.+... ..++.|.|+|.+.|+.
T Consensus 173 g~-----y~~~~~~~~~~~~~ytC~V~h~~ 197 (229)
T 1hxm_A 173 GK-----YNAVKLGKYEDSNSVTCSVQHDN 197 (229)
T ss_dssp SS-----EEEEEEEEETTTTTCEEEEEETT
T ss_pred Cc-----EEEEECcccCCCCcEEEEEEeCC
Confidence 43 222223 3367889999999874
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-15 Score=116.05 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=98.4
Q ss_pred CeeEeeeCCC-CCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-ceeE
Q psy13371 1 MLHQRKLKGL-LPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~ 77 (212)
+.|.|.+.|. |.| .|.|++++..............++.|.... .|.|.....+ .|.|+|.+.+.. ....
T Consensus 153 v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s-------~L~i~~~~~~-~g~ytC~v~n~~~~~~~ 224 (512)
T 1zvo_C 153 VVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSS-------QLSTPLQQWR-QGEYKCVVQHTASKSKK 224 (512)
T ss_pred EEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEE-------EEEEcHHHcC-CceEEEEEEeCCCCceE
Confidence 3689999997 765 899999652111111111112234444432 5888888777 899999999852 2222
Q ss_pred EE-----------EEEEeccc----------------------------------------------------ce-eeCC
Q psy13371 78 FV-----------NLNVVVPT----------------------------------------------------AE-ILGS 93 (212)
Q Consensus 78 ~~-----------~l~v~~~~----------------------------------------------------~~-~~~~ 93 (212)
.. .+.+..+| .. +..|
T Consensus 225 ~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p 304 (512)
T 1zvo_C 225 EIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTP 304 (512)
T ss_pred EEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECC
Confidence 11 22332211 11 2223
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
....+..|+.++|.|.+.+.+++...+.|++++..+.... .........++. ...+.|.|.....+|.|.|+|.|.|.
T Consensus 305 ~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~-~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~ 383 (512)
T 1zvo_C 305 AVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGV-EEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHP 383 (512)
T ss_pred ChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCce-eccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeC
Confidence 3334567999999999988744455799999998753110 101111122222 23466999888889999999999987
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-14 Score=112.40 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=97.5
Q ss_pred CeeEeeeCCC-C-CceEEEEeeCcceee-eec--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-c
Q psy13371 1 MLHQRKLKGL-L-PTRVSWIRHRDIHIL-TVG--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-V 74 (212)
Q Consensus 1 ~~l~C~~~~~-p-~~~v~W~~~~~~~~~-~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~ 74 (212)
+.|.|.+.|. | ...|.|+|++.. .. ... ......+++|... ..|.|.....+|.|.|+|.+.+.. .
T Consensus 315 ~~L~C~v~g~~P~~~~i~W~k~g~~-~~~~~~~~~~~~~~~gt~~~~-------s~L~i~~~~~~d~g~y~C~a~n~~~~ 386 (512)
T 1zvo_C 315 ATFTCFVVGSDLKDAHLTWEVAGKV-PTGGVEEGLLERHSNGSQSQH-------SRLTLPRSLWNAGTSVTCTLNHPSLP 386 (512)
T ss_pred eEEEEEEeceECCCeEEEEEECCEe-ccCceeccceecCCCCeEEEE-------EEEEEchHHhcCCCeEEEEEEeCCCC
Confidence 3689999996 3 349999998742 21 000 0111123344333 269999999999999999999853 1
Q ss_pred e-eEEEEEEE----ecccceeeCCCceeeeCCCcEE-EEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc--
Q psy13371 75 R-SFFVNLNV----VVPTAEILGSPDLHVDEGSTIN-LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-- 146 (212)
Q Consensus 75 ~-~~~~~l~v----~~~~~~~~~~~~~~~~~g~~~~-l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-- 146 (212)
. ...+.... ..+|.....++.. .|+.+. |.|.+.+.+++...+.|+++|+.+..............++.
T Consensus 387 ~~~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~ 463 (512)
T 1zvo_C 387 PQRLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTF 463 (512)
T ss_pred CCceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEE
Confidence 1 22221111 1223222222221 688899 99999987666667899999988743211111112223332
Q ss_pred eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 147 VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+.|.+.....+|.|.|+|.|.|+
T Consensus 464 ~~~s~L~v~~~~~~~~g~YtC~v~h~ 489 (512)
T 1zvo_C 464 WAWSVLRVPAPPSPQPATYTCVVSHE 489 (512)
T ss_pred EEEEEEEECchhcCCCCeEEEEEEec
Confidence 23345777777777899999999987
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=117.83 Aligned_cols=161 Identities=11% Similarity=0.155 Sum_probs=90.2
Q ss_pred CeeEeeeCCCCCc----eEEEEeeCcceeeeecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-
Q psy13371 1 MLHQRKLKGLLPT----RVSWIRHRDIHILTVGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~----~v~W~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~- 73 (212)
+.|.|.+.|.|.+ .|.|+|++. .+..... .....++.+.+.. .|.|.....+|+|.|+|.+.+..
T Consensus 267 v~L~C~~~g~~p~p~~~~i~W~k~~~-~~~~~~~~~~~~~~~g~~~~~~-------~l~i~~~d~~d~G~Y~C~a~n~~~ 338 (457)
T 1hzh_H 267 PEVTCVVVDVSHEDPEVKFNWYVDGV-EVHNAKTKPREEQYNSTYRVVS-------VLTVLHQDWLNGKEYKCKVSNKAL 338 (457)
T ss_dssp CCEEEEEECCCTTCCCCEEEEEETTE-EECCCEEEEEEECTTSCEEEEE-------EECCCHHHHHHTCCEEEEEECTTS
T ss_pred eEEEEEEEcccCCCCceEEEEEeCCc-cccccccccceecCCCcEEEEE-------EEEECHHHccCCCcEEEEEeCCCC
Confidence 4699999998543 999999874 2211100 0111122222221 23333443444999999999753
Q ss_pred ceeEEEEEE----EecccceeeC-CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-
Q psy13371 74 VRSFFVNLN----VVVPTAEILG-SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV- 147 (212)
Q Consensus 74 ~~~~~~~l~----v~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~- 147 (212)
.......+. +..+|..... +....+..|+ +.|.|.+.+.++|...+.|+++|..+..... .......++..
T Consensus 339 ~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~--~~~~~~~~g~~~ 415 (457)
T 1hzh_H 339 PAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKT--TPPVLDSDGSFF 415 (457)
T ss_dssp SSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEE--CCCEECTTSCEE
T ss_pred CCcceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceee--cCceeCCCCCEE
Confidence 222222232 2234433333 2323344455 9999999987655557999999987732111 11122233322
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+.|.+.....+|.|.|+|.|.|+
T Consensus 416 ~~s~l~i~~~~~~~~g~YtC~a~n~ 440 (457)
T 1hzh_H 416 LYSKLTVDKSRWQQGNVFSCSVMHE 440 (457)
T ss_dssp EEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred EEEEEEEChHHccCCCeEEEEEEEC
Confidence 2344666666667899999999997
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=107.18 Aligned_cols=162 Identities=11% Similarity=0.158 Sum_probs=94.4
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcceeeeec--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIHILTVG--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV 74 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 74 (212)
+.|.|.+.|.. ...|.|+|++. .+.... ......+++|.... .|.|.....+|.|.|+|++.+...
T Consensus 42 ~~L~C~v~g~~p~P~~i~v~W~k~g~-~l~~~~~~~~~~~~~g~~~~~s-------~L~i~~~~~~d~~~YtC~v~h~~~ 113 (240)
T 4acp_A 42 PEVTCVVVDVSHEDPEVKFNWYVDGV-EVHNAKTKPREEQYNSTYRVVS-------VLTVLHQDWLNGKEYKCKVSNKAL 113 (240)
T ss_dssp CEEEEEEESCCC--CCCEEEEEETTE-EECCCEECCCEEC---CEEEEE-------EEECCHHHHHHTCCEEEEEECC--
T ss_pred cEEEEEEeccccCCCccEEEEEECCc-ccCCceeccceECCCCeEEEEE-------EEEEechhccCCCEEEEEEEcCCC
Confidence 46999999964 34799999874 221110 01112244555542 688888888889999999998632
Q ss_pred -eeEEEEEE----EecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-E
Q psy13371 75 -RSFFVNLN----VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-T 148 (212)
Q Consensus 75 -~~~~~~l~----v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~ 148 (212)
......+. +..+|.+...+.......|+.+.|.|.+.+.+++.+.+.|++++..+.... ........++.. .
T Consensus 114 ~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~--~~~~~~~~dgt~~~ 191 (240)
T 4acp_A 114 PAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK--ATPPVLDSDGSFFL 191 (240)
T ss_dssp --CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEE--ECCCEECTTSCEEE
T ss_pred CccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcC--ccCceECCCCCEEE
Confidence 22222221 122333333333222234889999999998644445799999998752110 011122223332 2
Q ss_pred EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.|.+......+.|.|+|.+.|+
T Consensus 192 ~s~L~v~~~~~~~~~~ytC~V~h~ 215 (240)
T 4acp_A 192 YSKLTVDKSRWQQGNVFSCSVMHE 215 (240)
T ss_dssp EEEEEEEHHHHHTTCCEEEEEECT
T ss_pred EEEEEEChHHhCCCCEEEEEEEEC
Confidence 345666655556789999999997
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-17 Score=126.75 Aligned_cols=162 Identities=12% Similarity=0.141 Sum_probs=96.6
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcceeeeecce--eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIHILTVGSY--TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP- 73 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~- 73 (212)
+.|.|.+.|.+ .+.|.|+|++. .+...... ....++++. ....|.|.+++.+|+|.|+|.+.+..
T Consensus 248 ~~L~C~~~g~~p~P~~~~i~W~k~~~-~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 319 (434)
T 1igy_B 248 PKVTCVVVDISKDDPEVQFSWFVDNV-EVHTAQTQPREEQFNSTFR-------VVSALPIMHQDWLNGKEFKCRVNSAAF 319 (434)
T ss_dssp CEEEEEECCCCSSCCCCCBCBBSSSC-CBCCCSCCCCCCCCSSSCC-------CCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred cEEEEEEeccccCCCCeEEEEEeCCc-ccCCcccCcceeCCCCcEE-------EEEEEEECHHHccCCCcEEEEEECCCC
Confidence 46999999984 45899999874 22211100 000111111 12368999999999999999999852
Q ss_pred ce--eEEEEE--EEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eE
Q psy13371 74 VR--SFFVNL--NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VT 148 (212)
Q Consensus 74 ~~--~~~~~l--~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~ 148 (212)
.. ...+.+ .+..+|.....+.......|+.+.|.|.+.+.+++.+.+.|+++|..+... .........++. ..
T Consensus 320 ~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~--~~~~~~~~~~g~~~~ 397 (434)
T 1igy_B 320 PAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENY--KNTQPIMDTDGSYFV 397 (434)
T ss_dssp SSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCC--EECCCCCCSSSCEEE
T ss_pred CCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCc--eeccceeCCCCcEEE
Confidence 11 222222 222344333222222234577899999999865455579999999876211 000001122332 23
Q ss_pred EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.|.+.....+|.|.|+|.|.|+
T Consensus 398 ~s~l~i~~~~~~~~g~YtC~a~n~ 421 (434)
T 1igy_B 398 YSKLNVQKSNWEAGNTFTCSVLHE 421 (434)
T ss_dssp EEEEEEEHHHHHTTCCEEEEEEET
T ss_pred EEEEEECchhccCCCEEEEEEEcC
Confidence 345777777778899999999997
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-14 Score=115.39 Aligned_cols=167 Identities=17% Similarity=0.140 Sum_probs=101.6
Q ss_pred CeeEeeeCCCCCceEEEEee--CcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCce--e
Q psy13371 1 MLHQRKLKGLLPTRVSWIRH--RDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR--S 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~ 76 (212)
+.|.|.+.+ |.+.+.|+|+ +. .....+ .++... ....|.|.+++.+|+|.|+|.+.+.+.. +
T Consensus 146 v~L~C~~~~-p~~~v~w~~~~~~~-~~~~~~-------~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s 211 (772)
T 3v2a_R 146 VVIPCLGSI-SNLNVSLCARYPEK-RFVPDG-------NRISWD-----SKKGFTIPSYMISYAGMVFCEAKINDESYQS 211 (772)
T ss_dssp EEECCCCSC-SSCCEEEEEETTTE-EECCCS-------SSCEEE-----TTTEEEEEGGGTTTCSEEEEEEEETTEEEEC
T ss_pred EEEEccCCC-CCcEEEEEecCCCc-cccCCC-------ceeecC-----CCCCeEecCCChhhCeEEEEEEEECCceEEE
Confidence 468999987 7789999997 42 222211 111111 2236899999999999999999875322 2
Q ss_pred EEEEEEEeccc--ceeeCC-CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEee---cCceEEE
Q psy13371 77 FFVNLNVVVPT--AEILGS-PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE---KGEVTTS 150 (212)
Q Consensus 77 ~~~~l~v~~~~--~~~~~~-~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 150 (212)
....+.+...+ .....+ ....+.+|+.+.|.|.+.+.+.+...+.|++++..+....... ...... ......+
T Consensus 212 ~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 290 (772)
T 3v2a_R 212 IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVN-RDLKTQSGSEMKKFLS 290 (772)
T ss_dssp CEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEE-EEC-----CCCEEEEE
T ss_pred EEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeee-ccccccccccceEEEE
Confidence 22334443322 222333 3468999999999999998666666799999887653211000 000000 1122345
Q ss_pred EEEEeeeeecCCEEEEEEcccCC---eeEEEEEEe
Q psy13371 151 YLLIQQAELKDSGKYSCSPSNAD---VASVYVHVL 182 (212)
Q Consensus 151 ~l~i~~~~~~d~g~y~C~~~n~~---~~~~~~~v~ 182 (212)
.|.|.++..+|+|.|+|.+.|.. ...+.+.|.
T Consensus 291 ~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 325 (772)
T 3v2a_R 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 325 (772)
T ss_dssp EEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEe
Confidence 69999999999999999999872 334445443
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6e-15 Score=102.92 Aligned_cols=155 Identities=12% Similarity=0.055 Sum_probs=96.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.... ..++.+. .......|.|.+++.+|+|.|.|.+.|. +..+..+
T Consensus 36 v~l~C~~~g~p~p~i~W~~~g~--~l~~~~-----~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 106 (215)
T 3mtr_A 36 VNITCEVFAYPSATISWFRDGQ--LLPSSN-----YSNIKIY--NTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEF 106 (215)
T ss_dssp EEEEEEEEEESCCEEEEEETTE--ESSCSS-----SCSEEEE--EETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEEeecCCCEEEEEECCe--ECCCCC-----CccEEEe--cCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEE
Confidence 3689999999999999999773 222111 2355554 2335678999999999999999999986 4556667
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeC--CCCCc--eEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEe
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYS--PEPPA--YIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.|.+..+|....... ....+..+.|.|..... ..|.. .+.|..++... ................+.|.
T Consensus 107 ~l~v~~~P~~p~~~~--~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~------w~~~~~~~~~~~~~~~l~i~ 178 (215)
T 3mtr_A 107 ILVQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEV------WHSKWYDAKEASMEGIVTIV 178 (215)
T ss_dssp EEEECCCCCCCEEEE--EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCC------CEEEEEEHHHHHHHTEEEEE
T ss_pred EEEECCCCCCCcceE--EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCc------ccccccccccccccccEEEC
Confidence 777765543221111 12345678888864321 11221 36677665421 00000000000000248999
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
++...+.|.|.|.|.|.
T Consensus 179 ~L~~~~~y~~~~~A~N~ 195 (215)
T 3mtr_A 179 GLKPETTYAVRLAALNG 195 (215)
T ss_dssp CCCTTCEEEEEEEEEES
T ss_pred CCCCCCEEEEEEEEEeC
Confidence 99999999999999997
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=88.94 Aligned_cols=80 Identities=23% Similarity=0.381 Sum_probs=61.9
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.+...+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+.. ..+.....++. ...|.|.++..+|+|.|
T Consensus 13 pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~--v~W~k~g~~l~~----~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y 84 (107)
T 3knb_B 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPV--VVWEKGGQQLAA----SERLSFPADGA--EHGLLLTAALPTDAGVY 84 (107)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCE--EEEEETTEECCC----CSSEECCEETT--EEEEEESSCCGGGCEEE
T ss_pred CCEEEeCCCcEEEeCCCcEEEEEEEEEecCCE--EEEEECcccccc----eeeEEEeecCc--eEEEEEecCChhhCEEE
Confidence 44455667788899999999999999988776 999999988742 22233333332 24599999999999999
Q ss_pred EEEcccCC
Q psy13371 166 SCSPSNAD 173 (212)
Q Consensus 166 ~C~~~n~~ 173 (212)
+|.|.|..
T Consensus 85 ~C~a~N~~ 92 (107)
T 3knb_B 85 VCRARNAA 92 (107)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 99999983
|
| >4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-13 Score=92.22 Aligned_cols=168 Identities=20% Similarity=0.248 Sum_probs=108.1
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ .+....+. .+|+++++|...+...|++++++.+|.+.|.|.
T Consensus 18 l~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~sL~~eDTAvYYCA 97 (254)
T 4f9p_D 18 VKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSSLTSDDSAVYFCA 97 (254)
T ss_dssp EEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEECE
T ss_pred eEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEccCCCCCCEEEEEE
Confidence 57999999975 5689999976533221 12233323 279999999999999999999999999999997
Q ss_pred ecCCCc-eeEEEEEEEecc--------------------c-ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC
Q psy13371 69 LSTQPV-RSFFVNLNVVVP--------------------T-AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD 126 (212)
Q Consensus 69 ~~~~~~-~~~~~~l~v~~~--------------------~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~ 126 (212)
...... --.-..++|... . .+.+.|..+.+.+|+.++|.|.+...-.. .+.|+++.
T Consensus 98 r~~~~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~~~~~--~l~WyqQ~ 175 (254)
T 4f9p_D 98 RSDYGAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQSISN--NLHWYRQK 175 (254)
T ss_dssp ESSSCCEECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESSCCTT--CCEEEEEC
T ss_pred ecCCCCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccCcccC--CcEEEEEC
Confidence 653210 001123444321 0 12344666779999999999998644333 38999753
Q ss_pred --e---EEEeeCC-----CCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 127 --E---VISYDSS-----RGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 127 --~---~~~~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+ .+.+..+ ...++.....+ +..+|.|++++.+|.+.|.|...+.
T Consensus 176 PG~~p~lLiy~~s~~~sGvp~RFSgS~sg--t~ftLtIs~lq~eD~A~YYC~q~~~ 229 (254)
T 4f9p_D 176 SHESPRLLIKYASQSIFGIPSRFSGSGSG--TEFTLSINSVETEDFGIYFCQQSNS 229 (254)
T ss_dssp TTSCCEEEEETTTEECTTSCTTCEEECCT--TEEEEEEESCCTTCCEEEEEEECSS
T ss_pred CCCCCEEEEEeeeecCCCCCCCEEeeeeC--CEEEEEECCCCHHHCEEEEEeecCC
Confidence 2 2222111 11222222222 3456999999999999999976544
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-14 Score=86.39 Aligned_cols=81 Identities=22% Similarity=0.376 Sum_probs=60.7
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|.....+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+.... ..+......+. .++|.|.++..+|+|.|+
T Consensus 6 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~--v~W~k~g~~i~~~~--~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~ 79 (100)
T 3knb_A 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPE--VTWSCGGRKIHSQE--QGRFHIENTDD--LTTLIIMDVQKQDGGLYT 79 (100)
T ss_dssp EEECCCCSEEEEETTSEEEEEEEEEEESCCE--EEEEETTEECCTTG--GGTEEEEECSS--EEEEEESSCCGGGCEEEE
T ss_pred CEEEeCCCcEEEeCCCeEEEEEEEEEecCCE--EEEEECceEeeeec--cceeeeecccc--eEEEEEcCCCccCCEEEE
Confidence 3334456678899999999999999988776 99999998874221 12233333332 245999999999999999
Q ss_pred EEcccCC
Q psy13371 167 CSPSNAD 173 (212)
Q Consensus 167 C~~~n~~ 173 (212)
|.|.|..
T Consensus 80 C~a~N~~ 86 (100)
T 3knb_A 80 LSLGNEF 86 (100)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999983
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=103.04 Aligned_cols=138 Identities=14% Similarity=0.204 Sum_probs=82.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-c---ee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-V---RS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~---~~ 76 (212)
+.|.|.+.+. +.|+|++.. + . .+.... ........|.|.+++.+|+|.|+|.+.+.. . ..
T Consensus 18 v~L~C~~~~~----v~W~~~~~~-~-~---------~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~ 81 (289)
T 3mjg_X 18 FVLTCSGSAP----VVWERMSQE-P-P---------QEMAKA-QDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDER 81 (289)
T ss_dssp EEEEEEESSC----CEEEBTTBC-C-S---------EEEEEC-TTSCEEEEEEECSCCGGGCEEEEEECCC------CCC
T ss_pred EEEEEeccce----EEEECCCCC-c-c---------cceecc-CCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcE
Confidence 3689999875 999998742 1 1 011111 011124689999999999999999999852 1 23
Q ss_pred EEEEEEEecccceee-CCCc---eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEE
Q psy13371 77 FFVNLNVVVPTAEIL-GSPD---LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 77 ~~~~l~v~~~~~~~~-~~~~---~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 152 (212)
..+.+.+..+..... .... ..+.+|+.+.|.|.+. .|.|. +.|.+.+...... ........ +
T Consensus 82 ~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~--v~w~~~~~~~~~~------~~~~~~~~-----~ 147 (289)
T 3mjg_X 82 KRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLV--VTLHEKKGDVALP------VPYDHQRG-----F 147 (289)
T ss_dssp EEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSC--EEEEESSCCSCCC------CCEETTTE-----E
T ss_pred EeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCce--EEEEeCCCCCccc------eeecCCcC-----e
Confidence 344444433322221 1112 5688999999999997 55565 8888765211100 00011110 1
Q ss_pred EEeeeeecCCEEEEEEcccC
Q psy13371 153 LIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~ 172 (212)
. ...|+|.|+|.|.|.
T Consensus 148 ~----~~~d~G~Y~C~a~n~ 163 (289)
T 3mjg_X 148 S----GIFEDRSYICKTTIG 163 (289)
T ss_dssp E----ECCCSSEEEEEEEET
T ss_pred e----eeccCcEEEEEEEeC
Confidence 1 357999999999876
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=89.46 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=57.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|++. .+. .+.|+.+. .....++|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 31 ~~l~C~~~G~P~p~v~W~k~g~--~l~-------~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 99 (107)
T 3knb_B 31 AELKCVVLGEPPPVVVWEKGGQ--QLA-------ASERLSFP--ADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAA 99 (107)
T ss_dssp EEEEEEEEEESCCEEEEEETTE--ECC-------CCSSEECC--EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEecCCEEEEEECcc--ccc-------ceeeEEEe--ecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEE
Confidence 3689999999999999999873 222 13455554 2345678999999999999999999986 4566677
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|.++|
T Consensus 100 ~l~V~~pP 107 (107)
T 3knb_B 100 AVTVLEPP 107 (107)
T ss_dssp EEEEEC--
T ss_pred EEEEEcCC
Confidence 78877653
|
| >3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-13 Score=101.39 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=77.9
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCC-CceeEEEEEEEecccceeeCCCcee-eeCCC-cEEEEeEEeeCCCCC-ceEEEE
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVNLNVVVPTAEILGSPDLH-VDEGS-TINLTCSIKYSPEPP-AYIFWY 123 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~-~~~g~-~~~l~C~~~~~~~p~-~~v~W~ 123 (212)
++.+|+|.+++.+|+|.|.|.+.+. +.....+.|.|..+|.....+.... +..|+ .++|.|.+.+.+.+. +.+.|.
T Consensus 252 g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW~ 331 (401)
T 3f8u_B 252 GNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWE 331 (401)
T ss_dssp EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEEEE
T ss_pred CcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCCCCcEEEEE
Confidence 6789999999999999999999875 3445567788877665544443333 35676 799999999875442 679995
Q ss_pred -EcCe---EEEeeCCC-CceeEEeecCce-EEEEEEEeeeee-cCCEEEEEEcccC
Q psy13371 124 -HHDE---VISYDSSR-GGVSVITEKGEV-TTSYLLIQQAEL-KDSGKYSCSPSNA 172 (212)
Q Consensus 124 -~~~~---~~~~~~~~-~~~~~~~~~~~~-~~~~l~i~~~~~-~d~g~y~C~~~n~ 172 (212)
+++. ........ ........++.. ..+.|.+..... ++.+.|+|.+.|.
T Consensus 332 ~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~ 387 (401)
T 3f8u_B 332 LRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHP 387 (401)
T ss_dssp EESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECT
T ss_pred ecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcC
Confidence 7652 12111000 001122233332 234466654432 3445999999987
|
| >4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-12 Score=91.39 Aligned_cols=167 Identities=19% Similarity=0.298 Sum_probs=103.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee---ecceeee--cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCce
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT---VGSYTYT--SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR 75 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~--~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 75 (212)
+.|.|.++..-...+.|++..+..... ....... -..||+.+. +..+++|+|.+++.+|++.|.|........
T Consensus 19 vtisC~~S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~--Sgt~ftLtIs~lq~eD~A~YyC~~~~~~~~ 96 (259)
T 4f9l_D 19 ITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSG--SATGFTLTISSLQPEDIATYYCQQGHSYPY 96 (259)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEEESCCGGGCEEEEEEECSSSSC
T ss_pred EEEEEEcCCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeec--cCCeEEEEEcccChhhCEEEEEeecCCCCC
Confidence 368999876555679999876532211 1111111 136888873 556889999999999999999986543110
Q ss_pred eE--EEEEEEe----cc------------------cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEE
Q psy13371 76 SF--FVNLNVV----VP------------------TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVI 129 (212)
Q Consensus 76 ~~--~~~l~v~----~~------------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~ 129 (212)
.. -.+|.+. .+ ...+.......+.+|+.+.|.|.+.+.......+.|.++ |+.+
T Consensus 97 tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tfs~y~~~WvRQaPGkgL 176 (259)
T 4f9l_D 97 TFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTFTRYYLYWVKQRPGQGL 176 (259)
T ss_dssp CBCCCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSCGGGSCEEEEEECTTSCE
T ss_pred CccCCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCcccCcEEEEEECCCCce
Confidence 00 0112111 00 011222233468899999999999886544445788874 3322
Q ss_pred E-------------eeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 130 S-------------YDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 130 ~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
+ +.....+++.+..+....+..|.+++++.+|.+.|.|..
T Consensus 177 Ewvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm~sL~~eDTAvYYCAr 229 (259)
T 4f9l_D 177 EWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQLSSLTSEDSAVYYCSR 229 (259)
T ss_dssp EEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEECCCChHHCEEEEEEE
Confidence 1 222334455666665556677999999999999999964
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=84.89 Aligned_cols=75 Identities=24% Similarity=0.275 Sum_probs=56.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+... .+.|+.+. ...+..+|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 23 ~~l~C~~~g~P~p~v~W~k~g~--~i~~~-----~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 93 (100)
T 3knb_A 23 LTVACAFTGEPTPEVTWSCGGR--KIHSQ-----EQGRFHIE--NTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATV 93 (100)
T ss_dssp EEEEEEEEEESCCEEEEEETTE--ECCTT-----GGGTEEEE--ECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEecCCEEEEEECce--Eeeee-----ccceeeee--cccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEE
Confidence 3699999999999999999873 22211 13466655 3446678999999999999999999986 4556666
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 94 ~l~V~ 98 (100)
T 3knb_A 94 NIHIR 98 (100)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77664
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-13 Score=83.50 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=61.1
Q ss_pred cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEE
Q psy13371 85 VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGK 164 (212)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 164 (212)
.+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+... .+......+. ...|.|.++..+|+|.
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~--i~W~k~~~~~~~~----~~~~~~~~~~--~~~L~i~~~~~~D~G~ 78 (103)
T 3qp3_A 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAE--VKWYHNGVELQES----SKIHYTNTSG--VLTLEILDCHTDDSGT 78 (103)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCE--EEEEETTEECCCC----SSEEEEEETT--EEEEEECSCCGGGCEE
T ss_pred CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCE--EEEEECCEECCCC----CCEEEEECCC--EEEEEEcCCCcccCEE
Confidence 344555566778899999999999999887776 9999999877422 2223333222 2459999999999999
Q ss_pred EEEEcccCC
Q psy13371 165 YSCSPSNAD 173 (212)
Q Consensus 165 y~C~~~n~~ 173 (212)
|+|.|.|..
T Consensus 79 Y~C~a~N~~ 87 (103)
T 3qp3_A 79 YRAVCTNYK 87 (103)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEeCC
Confidence 999999983
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-13 Score=97.12 Aligned_cols=140 Identities=14% Similarity=0.182 Sum_probs=89.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcc-cCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKW-AQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.+.|.+.+.|++++. .+. .+.++.+. .......|.|.+ +..+|+|.|+|.+.|. +.....
T Consensus 122 ~~l~C~~~g~p~p~i~W~~~~~--~~~-------~~~~~~~~--~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~ 190 (305)
T 2nzi_A 122 VSIKIPFSGKPDPVITWQKGQD--LID-------NNGHYQVI--VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKT 190 (305)
T ss_dssp EEEEEEEEEESCCEEEEEESSS--BCC-------SSSSCEEE--ECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEE
T ss_pred EEEEEEECCCCCCEEEEEECCE--ECC-------CCCcEEEE--EcCCceEEEEecCCccCccEEEEEEEEeCCCceeeE
Confidence 3689999999999999999773 222 13355544 233567899999 9999999999999986 455666
Q ss_pred EEEEEecccceeeCCCceeeeCCCcEEEEeEE--------------eeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec
Q psy13371 79 VNLNVVVPTAEILGSPDLHVDEGSTINLTCSI--------------KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144 (212)
Q Consensus 79 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~--------------~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 144 (212)
+.|.|...|...... ......+..+.|.|.. ...+.+. ..|.+.+.. ..
T Consensus 191 ~~l~v~~~P~~p~~~-~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~--~~w~~~~~~--------------~~ 253 (305)
T 2nzi_A 191 VELDVADVPDPPRGV-KVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTA--ERWLRVGQA--------------RE 253 (305)
T ss_dssp EEEEEEBCCCCCEEE-EEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTS--CCEEEEEEE--------------SS
T ss_pred EEEEEecCCCCCCCc-eeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCC--CccEECccc--------------cC
Confidence 777776544221110 1111234555666653 2222221 223322111 01
Q ss_pred CceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 145 GEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 145 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+.|.++...+.|.|.|.|.|..
T Consensus 254 -----~~~~i~~l~~~~~y~~~~~A~N~~ 277 (305)
T 2nzi_A 254 -----TRYTVINLFGKTSYQFRVIAENKF 277 (305)
T ss_dssp -----SEEEECSCCSSCEEEEEEEEEETT
T ss_pred -----ceEEecCCCCCCeEEEEEEEEeCC
Confidence 248899999999999999999973
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=80.60 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=52.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+ |.|.|.|+|++. .+.. +.++.+. ..++.+.|+|.+++.+|+|.|+|.+.+. +..+.
T Consensus 14 v~l~C~vs~-p~p~v~W~k~g~-~l~~--------~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~n~---~~~a~ 78 (84)
T 2lu7_A 14 LELVVHLSG-PGGPVRWYKDGE-RLAS--------QGRVQLE--QAGARQVLRVQGARSGDAGEYLCDAPQD---SRIFL 78 (84)
T ss_dssp EEEECCCSC-CSTTCEEEETTE-ECCC--------CSSEEEE--ECSSCEEEEESSCSSTTCEEEEEECTTT---CEEEE
T ss_pred EEEEEEECC-CCcEEEEEECCE-Eccc--------cccEEEe--ecCCeEEEEecCCCCcccEEEEEEECCE---EEEEE
Confidence 368999977 888999999873 3322 3466655 3445678999999999999999999763 45566
Q ss_pred EEEecc
Q psy13371 81 LNVVVP 86 (212)
Q Consensus 81 l~v~~~ 86 (212)
|.|.+|
T Consensus 79 l~V~eP 84 (84)
T 2lu7_A 79 VSVEEP 84 (84)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 776543
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.4e-13 Score=80.52 Aligned_cols=86 Identities=26% Similarity=0.369 Sum_probs=63.8
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.+...+.+..+.+|+.+.|.|.+ .|.|. +.|++++..+.. ..+.....++.. ..|.|.++..+|+|.|+|
T Consensus 9 ~~~~~~~~~~v~~G~~v~l~C~v--~p~p~--v~W~k~g~~l~~----~~r~~i~~~~~~--~~L~I~~v~~~D~G~Y~C 78 (100)
T 2yuz_A 9 KILTPLTDQTVNLGKEICLKCEI--SENIP--GKWTKNGLPVQE----SDRLKVVQKGRI--HKLVIANALTEDEGDYVF 78 (100)
T ss_dssp CCSBCCCCEEEETTSCCCEEEEC--SSCCC--EEEEETTEECCC----CSSEEEEECSSE--EEEEESSCCGGGCSEEEE
T ss_pred EEeccCCceEEcCCCCEEEEEEe--CCCCe--EEEEECCEECCC----CCcEEEEEeCCE--EEEEECCCChhhCEEEEE
Confidence 34455667889999999999999 66666 999999988742 223334444432 459999999999999999
Q ss_pred EcccC-CeeEEEEEEee
Q psy13371 168 SPSNA-DVASVYVHVLN 183 (212)
Q Consensus 168 ~~~n~-~~~~~~~~v~~ 183 (212)
.|.|. ...++.+.|..
T Consensus 79 ~a~N~~~~~~a~L~V~~ 95 (100)
T 2yuz_A 79 APDAYNVTLPAKVHVIS 95 (100)
T ss_dssp EESSSCCCEEEEEEEEC
T ss_pred EEcCCCeeEEEEEEEeC
Confidence 99998 34566666653
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-13 Score=80.80 Aligned_cols=90 Identities=24% Similarity=0.469 Sum_probs=63.2
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+..... ........+. ..|.|.++..+|+|.|
T Consensus 5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~--v~W~~~g~~~~~~~~--~~~~~~~~~~---~~L~i~~v~~~D~G~Y 77 (100)
T 2kdg_A 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPD--VSWYLNGRTVQSDDL--HKMIVSEKGL---HSLIFEVVRASDAGAY 77 (100)
T ss_dssp EEECCCCCCCEEEETTCCEEEEEECEEESCCE--EEEEETTEEECCCSS--SCEEEETTTE---EEEEESSCCGGGCEEE
T ss_pred CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCE--EEEEECCEECcCCCc--EEEEEcCCCe---EEEEECCCCcccCEEE
Confidence 34444556677899999999999999887665 999999988743321 1112222221 3599999999999999
Q ss_pred EEEcccCC---eeEEEEEEe
Q psy13371 166 SCSPSNAD---VASVYVHVL 182 (212)
Q Consensus 166 ~C~~~n~~---~~~~~~~v~ 182 (212)
+|.|.|.. ...+.+.|.
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~ 97 (100)
T 2kdg_A 78 ACVAKNRAGEATFTVQLDVL 97 (100)
T ss_dssp EEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEcCCCeEEEEEEEEEE
Confidence 99999983 334444443
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-12 Score=103.26 Aligned_cols=151 Identities=10% Similarity=0.054 Sum_probs=91.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
|.|.|.+.|.|.|.+.|.|++...... . ..++.+.. ...+++.+.+..+...+.|.|.|...... .
T Consensus 94 l~v~c~~~g~P~p~i~W~k~g~~~~~~-~------~~~~~i~~-~~~~~~~l~~~~va~~~~G~~~~~~v~~~------~ 159 (731)
T 2v5y_A 94 LNVYVKVNNGPLGNPIWNISGDPTRTW-N------RAELAIST-FWPNFYQVIFEVITSGHQGYLAIDEVKVL------G 159 (731)
T ss_dssp EEEEEEETTCCCCSEEEEECCCCCSSC-E------EEEEEECC-CTTSCEEEEEEEEECSSCCEEEECCBEEE------S
T ss_pred EEEEEecCCCCccceeEEEeCCcCCce-e------EEEEEEee-cCCCceEEEEEEEecCCceEEEEeeEEee------e
Confidence 468999999999999999988421110 0 01111110 01334445555555566666655321100 0
Q ss_pred EEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEE-EE--EcCeEEEeeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIF-WY--HHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 81 l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
..+..+| .+..+.+..+..|+.+.|.|.+.+.|.|. +. |. +++..+.... ..........+.|.|.++
T Consensus 160 ~~~~~~p-~~~~~~~~~v~~G~~v~l~C~~~g~P~p~--i~~W~~~~~g~~l~~~~------~~~~~~~~~~~~l~I~~~ 230 (731)
T 2v5y_A 160 HPCTRTP-HFLRIQNVEVNAGQFATFQCSAIGRTVAG--DRLWLQGIDVRDAPLKE------IKVTSSRRFIASFNVVNT 230 (731)
T ss_dssp SCCSSSC-EECCCCCEEEETTSCEEEEEEEESCCCTT--CEEEEEESSSCCEEEEE------EEECCSSEEEEEEEECSC
T ss_pred ccccccc-ccccccceEEeCCCcEEEEEEeCCCCCCc--eeEEEecCCCccccccc------eEEeccccceEEEEEccc
Confidence 0011233 33356678899999999999999998887 66 77 5666653221 011111122356999999
Q ss_pred eecCCEEEEEEcccCCe
Q psy13371 158 ELKDSGKYSCSPSNADV 174 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~~~ 174 (212)
...|.|.|+|.|.|..+
T Consensus 231 ~~~d~g~Y~c~A~n~~G 247 (731)
T 2v5y_A 231 TKRDAGKYRCMIRTEGG 247 (731)
T ss_dssp CTTTCEEEEEEEEETTE
T ss_pred ccccCeEEEEEEECCCC
Confidence 99999999999999844
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=82.19 Aligned_cols=90 Identities=19% Similarity=0.188 Sum_probs=64.1
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+... .+........ ...|.|.++..+|+|.|+
T Consensus 8 p~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~--i~W~k~~~~~~~~----~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~ 79 (114)
T 2cqv_A 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPIT--CTWMKFRKQIQES----EHMKVENSEN--GSKLTILAARQEHCGCYT 79 (114)
T ss_dssp CEESCCCCSEEEETTCCEEEEEEEESSSSCE--EEEEESSSBCCCS----SSEEEEECSS--EEEEEETTCCTTTCEEEE
T ss_pred CEEEeCCCCeEEeCCCeEEEEEEEEcCCCCE--EEEEECCEECcCC----CCEEEEEcCC--EEEEEECCCChhcCEEEE
Confidence 3344556677899999999999999877666 9999999877321 1222222221 246999999999999999
Q ss_pred EEcccC---CeeEEEEEEeec
Q psy13371 167 CSPSNA---DVASVYVHVLNG 184 (212)
Q Consensus 167 C~~~n~---~~~~~~~~v~~~ 184 (212)
|.|.|. ....+.+.|...
T Consensus 80 C~a~N~~g~~~~~~~l~V~~~ 100 (114)
T 2cqv_A 80 LLVENKLGSRQAQVNLTVVDK 100 (114)
T ss_dssp EEEECSSCEEECCEEEEEECS
T ss_pred EEEEECCCcEEEEEEEEEECC
Confidence 999997 233455555543
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=80.52 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=64.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.|.+.+.|+|++.. ...........++|+.+... ...+.+|.|.+++.+|+|.|+|.+.+.+..+..+.
T Consensus 24 v~L~C~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~ 101 (108)
T 3m45_A 24 AILTCRVDQNDNTSLQWSNPAQQ-TLYFDDKKALRDNRIELVRA-SWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAY 101 (108)
T ss_dssp EEEEEEESSCSSCCEEEECTTCC-EEEETTEECSCCTTEEEEEE-SSSEEEEEECSCCGGGCEEEEEEECSSSCEEEEEE
T ss_pred EEEEeEEcCCCccEEEEEcCCCc-eEEEcCCcccccCcEEEeec-CCCcEEEEECCCChhHCeEEEEEEEcCCCcEEEEE
Confidence 36899999999999999997642 33333333334668887643 44678999999999999999999998556677777
Q ss_pred EEEeccc
Q psy13371 81 LNVVVPT 87 (212)
Q Consensus 81 l~v~~~~ 87 (212)
|.|..+|
T Consensus 102 L~V~~~P 108 (108)
T 3m45_A 102 LTVLGVP 108 (108)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 8776543
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.5e-13 Score=82.50 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=60.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.|+.+. .......|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 25 v~l~C~~~g~p~p~i~W~k~~~-~~~~--------~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~ 93 (114)
T 2cqv_A 25 VELFGKVTGTQPITCTWMKFRK-QIQE--------SEHMKVE--NSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQV 93 (114)
T ss_dssp EEEEEEEESSSSCEEEEEESSS-BCCC--------SSSEEEE--ECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCE
T ss_pred EEEEEEEEcCCCCEEEEEECCE-ECcC--------CCCEEEE--EcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEE
Confidence 3689999999999999999874 2221 3466655 2345678999999999999999999986 4566677
Q ss_pred EEEEeccccee
Q psy13371 80 NLNVVVPTAEI 90 (212)
Q Consensus 80 ~l~v~~~~~~~ 90 (212)
.|.|...|...
T Consensus 94 ~l~V~~~p~~P 104 (114)
T 2cqv_A 94 NLTVVDKPDPP 104 (114)
T ss_dssp EEEEECSCSCC
T ss_pred EEEEECCCCCC
Confidence 88887655433
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=83.33 Aligned_cols=86 Identities=13% Similarity=0.300 Sum_probs=63.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.|.+.+.|++.++. +..........++|+.+.. ......+|+|.+++.+|+|.|+|.+.+.+.....+.
T Consensus 19 v~L~C~~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~g~~~~~~~ 96 (124)
T 3rbg_A 19 LTLKCVTSLRKNSSLQWLTPSGF-TIFLNEYPVLKNSKYQLLH-HSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVK 96 (124)
T ss_dssp EEEEEECCCCTTCEEEEECTTSC-EEEETTEECSCSSCCEEEE-EETTEEEEEESSCCGGGCEEEEEEEESSSEEEEEEE
T ss_pred EEEEeEEeccCCCEEEEECCCCe-EEEEeccccccCCcEEEEe-CCCCEEEEEECCCChHHCEEEEEEEEcCCCCcEEEE
Confidence 36999999999999999976642 2222222223466777764 345678999999999999999999988766677778
Q ss_pred EEEecccc
Q psy13371 81 LNVVVPTA 88 (212)
Q Consensus 81 l~v~~~~~ 88 (212)
|.|..+|.
T Consensus 97 l~V~~~P~ 104 (124)
T 3rbg_A 97 VIVLATMK 104 (124)
T ss_dssp EEEECC--
T ss_pred EEEEeCCC
Confidence 88877653
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-12 Score=77.65 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=59.6
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+... .........+. ...|.|.++..+|+|.|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~--v~W~k~g~~~~~~---~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y 77 (99)
T 1g1c_A 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPE--CEWYKNGVKIERS---DRIYWYWPEDN--VCELVIRDVTGEDSASI 77 (99)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCE--EEEEETTEECCCC---SSEEEEEEETT--EEEEEECSCCGGGCEEE
T ss_pred CCceEecCcceEEcCCCcEEEEEEEEEeCCCE--EEEEECCEECCCC---CCEEEEEcCCC--EEEEEECCCCcCCCEEE
Confidence 34444566778899999999999999887776 9999999877422 11122211222 24599999999999999
Q ss_pred EEEcccCC
Q psy13371 166 SCSPSNAD 173 (212)
Q Consensus 166 ~C~~~n~~ 173 (212)
+|.|.|..
T Consensus 78 ~C~a~N~~ 85 (99)
T 1g1c_A 78 MVKAINIA 85 (99)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 99999983
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-12 Score=77.16 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=60.8
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.+...+.+..+.+|+.++|.|.+.+ +.|. +.|+++|.++... .+.....++.. ..|.|.++..+|+|.|+|
T Consensus 7 ~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~--v~W~k~g~~i~~~----~~~~i~~~g~~--~~L~I~~v~~~D~G~Y~C 77 (93)
T 1waa_A 7 EVEKPLYGVEVFVGETAHFEIELSE-PDVH--GQWKLKGQPLAAS----PDCEIIEDGKK--HILILHNCQLGMTGEVSF 77 (93)
T ss_dssp CEEECCCCEEEETTSCEEEEEEESS-SSCC--CEEEETTEECCCB----TTEEEEEETTE--EEEEECSCCGGGCEEEEE
T ss_pred EeeccCcceEEeCCCCEEEEEEECC-CCCe--EEEEECCEECcCC----CCEEEEEECCE--EEEEECCCChhhCEEEEE
Confidence 3445567788999999999999964 3455 9999999987422 22333333332 459999999999999999
Q ss_pred EcccCCeeEEEEEE
Q psy13371 168 SPSNADVASVYVHV 181 (212)
Q Consensus 168 ~~~n~~~~~~~~~v 181 (212)
.|.|.. .+..+.|
T Consensus 78 ~a~n~~-~sa~L~V 90 (93)
T 1waa_A 78 QAANTK-SAANLKV 90 (93)
T ss_dssp EETTEE-EEEEEEE
T ss_pred EECCCc-EEEEEEE
Confidence 999863 3444544
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-12 Score=77.57 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=60.1
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+.... ........+. ...|.|.++..+|+|.|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~--v~W~k~~~~~~~~~---~~~~~~~~~~--~~~L~i~~~~~~D~G~Y 77 (99)
T 1u2h_A 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPV--VSWLRNRQPVRPDQ---RRFAEEAEGG--LCRLRILAAERGDAGFY 77 (99)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCCE--EEEEETTEECCCBT---TEEEEECGGG--EEEEEESSCCGGGCEEE
T ss_pred CCEEEEcCCceEecCCCEEEEEEEEEEcCCCE--EEEEECCEECCCCC---CEEEEECCCC--EEEEEEccCCcCCCEEE
Confidence 34444556677899999999999999887765 99999998774221 2222222332 24599999999999999
Q ss_pred EEEcccCC
Q psy13371 166 SCSPSNAD 173 (212)
Q Consensus 166 ~C~~~n~~ 173 (212)
+|.|.|..
T Consensus 78 ~C~a~N~~ 85 (99)
T 1u2h_A 78 TCKAVNEY 85 (99)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 99999983
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.43 E-value=9.4e-13 Score=81.62 Aligned_cols=83 Identities=20% Similarity=0.430 Sum_probs=53.9
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.+..+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+... ........+ ..|.|.++..
T Consensus 4 ~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~--i~W~~~~~~~~~~----~~~~~~~~~----~~L~i~~v~~ 73 (108)
T 3kvq_A 4 TVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ--IMWFKDNETLVED----SGIVLKDGN----RNLTIRRVRK 73 (108)
T ss_dssp -------CCCBSCCCCEEEETTCCEEEECBCC----CC--EEEEESSSBCCCB----TTEEEETTT----TEEEECSCCG
T ss_pred eECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCe--EEEEECCeEcccC----CCeEEeCCC----cEEEEeecCc
Confidence 34555566666667788899999999999998887776 9999998876321 111222222 2499999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|+|.+.|.
T Consensus 74 ~D~G~Y~C~a~n~ 86 (108)
T 3kvq_A 74 EDEGLYTCQACSV 86 (108)
T ss_dssp GGCEEEEEEEC--
T ss_pred ccCEEEEEEEEeC
Confidence 9999999999997
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-12 Score=77.69 Aligned_cols=80 Identities=24% Similarity=0.448 Sum_probs=59.7
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+.. ..+.....++. ...|.|.++..+|+|.|
T Consensus 6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~--v~W~~~g~~~~~----~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y 77 (99)
T 3puc_A 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPT--AIWTKDGKAITQ----GGKYKLSEDKG--GFFLEIHKTDTSDSGLY 77 (99)
T ss_dssp EEEEEECCCCEEEESSSCEEEEEEEEEESCCE--EEEEETTEECCS----SSSEEEEEETT--EEEEEECSCCGGGCEEE
T ss_pred CCEEEecCccEEEeCCCcEEEEEEEEecCCCE--EEEEECCEECcC----CCCEEEEEeCC--EEEEEECCCCcccCEEE
Confidence 34445556677899999999999999887765 999999987632 12233333322 14599999999999999
Q ss_pred EEEcccCC
Q psy13371 166 SCSPSNAD 173 (212)
Q Consensus 166 ~C~~~n~~ 173 (212)
+|.|.|..
T Consensus 78 ~C~a~n~~ 85 (99)
T 3puc_A 78 TCTVKNSA 85 (99)
T ss_dssp EEEEEETT
T ss_pred EEEEEeCC
Confidence 99999973
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=75.99 Aligned_cols=78 Identities=23% Similarity=0.446 Sum_probs=57.4
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.+..+.+|+.+.|.|.+.+ |.|. +.|++++.++.. ........++.. ..|.|.++..+|+|.|+|.|.|.
T Consensus 4 t~v~~~~G~~v~l~C~vs~-p~p~--v~W~k~g~~l~~----~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~n~- 73 (84)
T 2lu7_A 4 TRVRSTPGGDLELVVHLSG-PGGP--VRWYKDGERLAS----QGRVQLEQAGAR--QVLRVQGARSGDAGEYLCDAPQD- 73 (84)
T ss_dssp CCEEECTTSCEEEECCCSC-CSTT--CEEEETTEECCC----CSSEEEEECSSC--EEEEESSCSSTTCEEEEEECTTT-
T ss_pred eEEEEecCCCEEEEEEECC-CCcE--EEEEECCEEccc----cccEEEeecCCe--EEEEecCCCCcccEEEEEEECCE-
Confidence 4567889999999999854 6676 999999998842 223333334332 35999999999999999999775
Q ss_pred eeEEEEEE
Q psy13371 174 VASVYVHV 181 (212)
Q Consensus 174 ~~~~~~~v 181 (212)
..++.+.|
T Consensus 74 ~~~a~l~V 81 (84)
T 2lu7_A 74 SRIFLVSV 81 (84)
T ss_dssp CEEEEEEE
T ss_pred EEEEEEEE
Confidence 34455554
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-12 Score=80.85 Aligned_cols=81 Identities=26% Similarity=0.498 Sum_probs=60.6
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
++.++..+....+.+|+.+.|.|.+.+.|.|. +.|++++..+.... .+......+. ....|.|.++..+|+|.|
T Consensus 15 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~--v~W~k~~~~~~~~~---~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y 88 (116)
T 2kkq_A 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPK--LFWKRNNEMVQFNT---DRISLYQDNT-GRVTLLIKDVNKKDAGWY 88 (116)
T ss_dssp CCCBSSCCCCEEEETTEEEEEEEEBCCBSCCE--EEEEETTEECCCCB---TTEEEEECTT-CEEEEEEEEECGGGCEEE
T ss_pred CCeEEeCCCcEEEeCCCcEEEEEEEeccCCCE--EEEEECCEECcCCC---CeEEEEeCCC-CeEEEEECCCCcccCEEE
Confidence 45566667788999999999999998887665 99999998774221 1222222221 123599999999999999
Q ss_pred EEEcccC
Q psy13371 166 SCSPSNA 172 (212)
Q Consensus 166 ~C~~~n~ 172 (212)
+|.|.|.
T Consensus 89 ~C~a~N~ 95 (116)
T 2kkq_A 89 TVSAVNE 95 (116)
T ss_dssp EEEEEET
T ss_pred EEEEEcC
Confidence 9999998
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=79.59 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=56.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+ .|.|.+.|+|++. .+. .+.|+.+.. ....+.|.|.+++.+|+|.|+|.+.|. ..+..+.
T Consensus 25 v~l~C~v--~p~p~v~W~k~g~-~l~--------~~~r~~i~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~-~~~~~a~ 90 (100)
T 2yuz_A 25 ICLKCEI--SENIPGKWTKNGL-PVQ--------ESDRLKVVQ--KGRIHKLVIANALTEDEGDYVFAPDAY-NVTLPAK 90 (100)
T ss_dssp CCEEEEC--SSCCCEEEEETTE-ECC--------CCSSEEEEE--CSSEEEEEESSCCGGGCSEEEEEESSS-CCCEEEE
T ss_pred EEEEEEe--CCCCeEEEEECCE-ECC--------CCCcEEEEE--eCCEEEEEECCCChhhCEEEEEEEcCC-CeeEEEE
Confidence 4689999 7889999999873 222 245666652 345678999999999999999999997 5567788
Q ss_pred EEEeccc
Q psy13371 81 LNVVVPT 87 (212)
Q Consensus 81 l~v~~~~ 87 (212)
|.|.++|
T Consensus 91 L~V~~~P 97 (100)
T 2yuz_A 91 VHVISGP 97 (100)
T ss_dssp EEEECCS
T ss_pred EEEeCCC
Confidence 8887765
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-11 Score=81.15 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=76.1
Q ss_pred EEEEEcccCCCCCEEEEEEecCC-CceeEEEEEEEeccc-ceeeCCCceeeeCCCcEEEEeEEeeCCCC-CceEEEEEcC
Q psy13371 50 WTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVNLNVVVPT-AEILGSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWYHHD 126 (212)
Q Consensus 50 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~~ 126 (212)
..|.|.+++. | |.|.|.+... ...+..+.|.|..+| .....+....+.+|+.++|.|.+.+..++ ...+.|++++
T Consensus 50 ~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~ 127 (185)
T 1iam_A 50 KVYELSNVQE-D-SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGE 127 (185)
T ss_dssp EEEEEEEECS-C-BCCEEEEECSSCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETT
T ss_pred eEEEEEecCc-C-CEEEEEEECCCCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCC
Confidence 4688999973 4 9999999875 456677788887655 34445555568999999999999875322 2358999999
Q ss_pred eEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 127 EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.+....... +. ...++.+.....+|...|+|.|.|.
T Consensus 128 ~~l~~~~~~~------~~---~~~tl~~~~~reD~g~~~sC~A~~~ 164 (185)
T 1iam_A 128 KELKREPAVG------EP---AEVTTTVLVRRDHHGAQFSCRTELD 164 (185)
T ss_dssp EEEEEEECCT------TT---EEEEEEEECCSSCSSCEEEEEEEEE
T ss_pred EEcccccCCC------cc---ccEEEEEeceeccCCCeEEEEEEec
Confidence 9885432110 11 1123666544444555999999986
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-12 Score=78.17 Aligned_cols=87 Identities=23% Similarity=0.396 Sum_probs=63.1
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.....+....+..|+.+.|.|.+.+.|.|. +.|++++..+... ..+.....++ .|.|.++..+|+|.|
T Consensus 8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~--v~W~~~~~~~~~~---~~~~~~~~~~-----~L~i~~v~~~d~G~Y 77 (100)
T 2edj_A 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPV--ISWLKEGFTFPGR---DPRATIQEQG-----TLQIKNLRISDTGTY 77 (100)
T ss_dssp SCEEEECCCCEEEESSSEEEECCEEECSSCCE--EEEEESSSEESSS---CSSCEECTTC-----CEEEESCCTTTCCEE
T ss_pred CCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCE--EEEEECCEECCCC---CCCEEEcCCC-----EEEEccCCcccCEEE
Confidence 34445566777899999999999999887666 9999999877421 1222333333 399999999999999
Q ss_pred EEEcccC---CeeEEEEEEe
Q psy13371 166 SCSPSNA---DVASVYVHVL 182 (212)
Q Consensus 166 ~C~~~n~---~~~~~~~~v~ 182 (212)
+|.+.|. ....+.+.|.
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~ 97 (100)
T 2edj_A 78 TCVATSSSGETSWSAVLDVT 97 (100)
T ss_dssp EEEEECSSCCCBCCEEEEEE
T ss_pred EEEEEcCCCCEEEEEEEEEe
Confidence 9999997 3344455443
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=92.64 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=55.8
Q ss_pred cCCCCCEEEEEEecCCCceeEEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCC---CceEEEEEcC--eEEE-
Q psy13371 57 AQKRDAGVYECQLSTQPVRSFFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEP---PAYIFWYHHD--EVIS- 130 (212)
Q Consensus 57 ~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p---~~~v~W~~~~--~~~~- 130 (212)
++.+|+|.|.|.+... ......+.+..++.....+....+.+|+.++|.|.+.+.+.. ...+.|++++ ..+.
T Consensus 11 v~~~dsg~Y~C~a~g~--~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~ 88 (254)
T 2c1o_A 11 VRPGTSVKLSCKASGY--SFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKR 88 (254)
T ss_dssp -----------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEE
T ss_pred ecCCccEEEEEcCchh--hhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceE
Confidence 6889999999999832 222233333334455555777889999999999999876521 2349999753 2211
Q ss_pred --e-----eCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 131 --Y-----DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 131 --~-----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
. ......+......+. ...|.|.+++.+|+|.|+|.+.|.
T Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~n~ 135 (254)
T 2c1o_A 89 LIYLVSKLDSGDPDRFTGSGSGT--DFTLKISRVEAEDLGIYYCVQGSH 135 (254)
T ss_dssp EEETTTEECTTCCTTEEEEEETT--EEEEEESSCCGGGCSEEEEEECSS
T ss_pred EEEeccccCCCccceEEEecCCC--EEEEEECcCCcccCEEEEEEEEcC
Confidence 0 111112222222221 235999999999999999999987
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=77.99 Aligned_cols=67 Identities=18% Similarity=0.521 Sum_probs=51.0
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.+|+.+.|.|.+.+ |.|. +.|+++|..+.. ..+.....++.. ..|.|.++..+|+|.|+|.|.|.
T Consensus 17 ~~~~g~~v~l~C~v~~-p~~~--v~W~k~g~~i~~----~~~~~i~~~~~~--~~L~I~~v~~~D~G~Y~C~a~n~ 83 (91)
T 2lvc_A 17 HAITSECVMLACEVDR-EDAP--VRWYKDGQEVEE----SDFVVLENEGPH--RRLVLPATQPSDGGEFQCVAGDE 83 (91)
T ss_dssp ECCTTCCEEEEEECSC-TTSC--CEEEETTSCCCC----CSSCEEEEETTE--EEEEESSCCGGGCSEEEEECSSC
T ss_pred EEECCCcEEEEEEECC-CCcE--EEEEECCEEeee----eeeeeEEecCCe--EEEEeCCCChhhcEEEEEEEcce
Confidence 4568999999999854 5566 999999998742 223334444432 35999999999999999999876
|
| >2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-12 Score=88.62 Aligned_cols=152 Identities=16% Similarity=0.123 Sum_probs=93.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eee-ecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILT-VGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~-~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-- 73 (212)
+.|.|.+.+...+.+.|+|..... +.. .........+||.+..+...+..+|+|.+++.+|+|.|.|.+.+..
T Consensus 21 vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~ 100 (210)
T 2eys_A 21 CTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGST 100 (210)
T ss_dssp EEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEESCSST
T ss_pred EEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEEccCCC
Confidence 369999988877799999976321 121 1111112368999987677788999999999999999999987631
Q ss_pred --cee--EEEEEEEecc----cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC
Q psy13371 74 --VRS--FFVNLNVVVP----TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145 (212)
Q Consensus 74 --~~~--~~~~l~v~~~----~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 145 (212)
... ....|.|... .+.+..+. .....++|.|.+.+.+++ .++.+... .....+..
T Consensus 101 ~~~~~fg~gt~L~V~~~~~~~~P~V~~~~----~~~~~~tl~Cl~~gf~P~-~~v~~~~~-----------~~~~~t~~- 163 (210)
T 2eys_A 101 LGRLYFGRGTQLTVWPDIQNPDPAVYQLR----DSKSSDKSVCLFTDFDSQ-TNVSQSKD-----------SDVYITDK- 163 (210)
T ss_dssp TCCEEECCCEEEEEECCCSSCCCEEEEEC----CCSSSSCEEEEEESCCTT-CCCCCCSS-----------TTEEECCC-
T ss_pred cccceECCCEEEEEECCCCCCCCeEEecC----CCCCCceEEEEcccccCC-cEeccccC-----------cceEccCc-
Confidence 111 2245666532 11111111 112268999999987544 44422111 11111111
Q ss_pred ceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 146 EVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 146 ~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..|.+......+.|.|.|.+.|..
T Consensus 164 ----~~l~~~~~~~~~~~~~~w~~~~~~ 187 (210)
T 2eys_A 164 ----CVLDMRSMDFKSNSAVAWSNKSDF 187 (210)
T ss_dssp ----EEEEETTTTEEEEEEEEEECSTTC
T ss_pred ----hhcchhcccccccchhhccCCCce
Confidence 136677777788899999988763
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=82.17 Aligned_cols=77 Identities=9% Similarity=0.044 Sum_probs=54.0
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeC-----CCCeEEEEEcccCCCCCEEEEEEecCC-Cce
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR-----EGDEWTLHIKWAQKRDAGVYECQLSTQ-PVR 75 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 75 (212)
.|.|.+.|.|.|.|+|+|++. .+.. +.++...... ......|+|.++..+|+|.|+|.+.|. +..
T Consensus 19 ~l~c~v~G~P~P~I~W~knG~--~l~~-------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~ 89 (126)
T 1he7_A 19 CIPFSVDGQPAPSLRWLFNGS--VLNE-------TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA 89 (126)
T ss_dssp EEEEEECCSSCCEEEEEETTE--ECCC-------CSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEE
T ss_pred EEEEEEeeeCCCeEEEEECCE--ECCC-------CCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeE
Confidence 589999999999999999873 3321 2233222111 112467999999999999999999996 455
Q ss_pred eEEEEEEEeccc
Q psy13371 76 SFFVNLNVVVPT 87 (212)
Q Consensus 76 ~~~~~l~v~~~~ 87 (212)
...+.|.|...|
T Consensus 90 ~~t~~l~v~~~P 101 (126)
T 1he7_A 90 SASIMAAFMDNP 101 (126)
T ss_dssp EEEEEECCCSCT
T ss_pred EEEEEEEEEcCC
Confidence 566666665544
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-12 Score=77.85 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=55.4
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
..+....+..|+.+.|.|.+.+.|.|. +.|++++ ..+. ... ......+ .+.|.|.++..+|+|.|+|.
T Consensus 7 ~~~~~~~v~~G~~~~l~C~~~g~P~p~--i~W~k~~~~~~~~----~~~-~~~~~~~---~~~L~i~~~~~~D~G~Y~C~ 76 (93)
T 1wit_A 7 TASRKIKIKAGFTHNLEVDFIGAPDPT--ATWTVGDSGAALA----PEL-LVDAKSS---TTSIFFPSAKRADSGNYKLK 76 (93)
T ss_dssp CCCCEEEECTTBCCEEEEEEECCSSCE--EEEECSTTTCBCS----TTS-EEEEETT---EEEEECTTBCGGGCEEEEEE
T ss_pred cCCCceEEeCCCEEEEEEEEEEcCCCE--EEEEECCCCcccC----CcE-EEEecCC---EEEEEECCCChhcCEEEEEE
Confidence 345567889999999999999988776 9999998 6652 111 1111111 24699999999999999999
Q ss_pred cccCCe
Q psy13371 169 PSNADV 174 (212)
Q Consensus 169 ~~n~~~ 174 (212)
|.|..+
T Consensus 77 a~N~~G 82 (93)
T 1wit_A 77 VKNELG 82 (93)
T ss_dssp EEETTE
T ss_pred EEcCCC
Confidence 999843
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.7e-12 Score=77.09 Aligned_cols=88 Identities=25% Similarity=0.456 Sum_probs=63.5
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
+.....+....+.+|+.+.|.|.+.+ +.+. +.|++++..+.. ..+.....++. .+.|.|.++..+|+|.|+
T Consensus 9 p~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~--v~W~k~g~~~~~----~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~ 79 (103)
T 2edf_A 9 AAIIKPLEDQWVAPGEDVELRCELSR-AGTP--VHWLKDRKAIRK----SQKYDVVCEGT--MAMLVIRGASLKDAGEYT 79 (103)
T ss_dssp CCEEECCCCEEECTTSCEEECCEESS-SSCC--CCEEESSCBCCC----SSSEEEEEETT--EEEEEESSCCTTTCSEEE
T ss_pred cEEEecCCccEEcCCCCEEEEEEEeC-CCCc--EEEEECCEEccC----CCCEEEEECCC--EEEEEECCCCcccCEEEE
Confidence 33445566788999999999999985 5555 999999987732 22333333333 245999999999999999
Q ss_pred EEcccCCeeEEEEEEeec
Q psy13371 167 CSPSNADVASVYVHVLNG 184 (212)
Q Consensus 167 C~~~n~~~~~~~~~v~~~ 184 (212)
|.+.| ....+.+.|...
T Consensus 80 C~a~n-~~~~~~l~V~~~ 96 (103)
T 2edf_A 80 CEVEA-SKSTASLHVEEK 96 (103)
T ss_dssp EECSS-CEEEEEEEECCC
T ss_pred EEEcc-CCcEEEEEEeCC
Confidence 99999 455666666543
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-12 Score=80.55 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=56.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+. .+++.+. .......|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 42 ~~l~C~~~g~P~p~i~W~k~g~--~l~--------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 109 (118)
T 2e7c_A 42 LNLVVPFQGKPRPQVVWTKGGA--PLD--------TSRVHVR--TSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATI 109 (118)
T ss_dssp EEEEEEEEEESCCEEEEEETTE--ECC--------CSSCEEE--ECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEE
T ss_pred EEEEEEEccCCCCEEEEEECCE--ECC--------CCcEEEE--ECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEE
Confidence 3689999999999999999873 222 1344443 2345667999999999999999999986 5566677
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|..+|
T Consensus 110 ~l~V~~~P 117 (118)
T 2e7c_A 110 RIRVVEKA 117 (118)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 77776543
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-12 Score=79.31 Aligned_cols=78 Identities=22% Similarity=0.362 Sum_probs=58.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. .+.|+.+.. ...+..+|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 33 v~L~C~~~g~p~p~v~W~k~~~--~~~~------~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 103 (116)
T 2kkq_A 33 VKLECQISAIPPPKLFWKRNNE--MVQF------NTDRISLYQ-DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNT 103 (116)
T ss_dssp EEEEEEBCCBSCCEEEEEETTE--ECCC------CBTTEEEEE-CTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeccCCCEEEEEECCE--ECcC------CCCeEEEEe-CCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEE
Confidence 3689999999999999999873 2221 135666653 2335668999999999999999999986 4556677
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|..+|
T Consensus 104 ~l~V~~~p 111 (116)
T 2kkq_A 104 RLDVTARP 111 (116)
T ss_dssp EEEEECCS
T ss_pred EEEEeCCC
Confidence 77777654
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=79.61 Aligned_cols=79 Identities=33% Similarity=0.454 Sum_probs=59.5
Q ss_pred cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEE
Q psy13371 85 VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGK 164 (212)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 164 (212)
.+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+... ... ...+ ...|.|.++..+|+|.
T Consensus 10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~--v~W~~~g~~~~~~----~~~--~~~~---~~~L~i~~v~~~D~G~ 78 (99)
T 2yr3_A 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPR--ITWLLNGQPIQYA----RST--CEAG---VAELHIQDALPEDHGT 78 (99)
T ss_dssp EEEEEEECCCCEEECTTCCEEEECEEEEESCCC--CEEEESSSBCSSC----CCE--EETT---EEEEEECSCCTTCCBC
T ss_pred cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCe--EEEEECCEECccc----ceE--eeCC---eEEEEECCCChhhCEE
Confidence 345555566778899999999999999988777 9999998876311 111 1111 1459999999999999
Q ss_pred EEEEcccCCe
Q psy13371 165 YSCSPSNADV 174 (212)
Q Consensus 165 y~C~~~n~~~ 174 (212)
|+|.|.|..+
T Consensus 79 Y~C~a~N~~g 88 (99)
T 2yr3_A 79 YTCLAENALG 88 (99)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEEECCC
Confidence 9999999843
|
| >2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-12 Score=87.61 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=73.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeec-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC---
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVG-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--- 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--- 72 (212)
+.|.|.+.+.....+.|+|..... +.... ......++|+.+..+...+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 18 v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~ 97 (203)
T 2bnu_A 18 LVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGG 97 (203)
T ss_dssp EEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEECSSS
T ss_pred EEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcccCeEEEEEEEcCcCc
Confidence 369999988776799999976321 11111 1111236899998766778899999999999999999998753
Q ss_pred -C--ceeEEEEEEEecc----cceeeCCCceeeeCCCcEEEEeEEee-CCCCC
Q psy13371 73 -P--VRSFFVNLNVVVP----TAEILGSPDLHVDEGSTINLTCSIKY-SPEPP 117 (212)
Q Consensus 73 -~--~~~~~~~l~v~~~----~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~ 117 (212)
. .......|.|... .+.+.... ...+.++|.|.+.+ .|.|.
T Consensus 98 ~~~~~~g~gt~L~V~~~~~~~~P~V~~~~----~~~~~~~L~C~~~g~~P~p~ 146 (203)
T 2bnu_A 98 SYIPTFGRGTSLIVHPYIQNPDPAVYQLR----RSKSSDKSVCLFTDFDSQTN 146 (203)
T ss_dssp TTCCEECCCEEEEEECCCSSCCCEEEEEC----CSSSSSCEEEEEESCCTTCC
T ss_pred ceeeeeCCCEEEEEeCCCCCCCCeEEecC----CCCCCcEEEEEccccccCcc
Confidence 1 1112346666542 11221111 12247899999998 56664
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=78.26 Aligned_cols=60 Identities=15% Similarity=0.288 Sum_probs=46.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+ |.+.+.|+|++. .+.. +.++.+. ..++.++|.|.+++.+|+|.|+|.+.|.
T Consensus 24 v~l~C~v~~-p~~~v~W~k~g~-~i~~--------~~~~~i~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 83 (91)
T 2lvc_A 24 VMLACEVDR-EDAPVRWYKDGQ-EVEE--------SDFVVLE--NEGPHRRLVLPATQPSDGGEFQCVAGDE 83 (91)
T ss_dssp EEEEEECSC-TTSCCEEEETTS-CCCC--------CSSCEEE--EETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred EEEEEEECC-CCcEEEEEECCE-Eeee--------eeeeeEE--ecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence 369999976 788999999873 3322 3456555 2345678999999999999999999774
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=75.99 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=62.1
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....+.+..+.+|+.++|.|.+.+ +.+. +.|++++..+...... ++....++. ...|.|.++..+|+|.|+|.
T Consensus 10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~--v~W~k~g~~l~~~~~~--~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~ 82 (103)
T 1x44_A 10 VTKQLEDTTAYCGERVELECEVSE-DDAN--VKWFKNGEEIIPGPKS--RYRIRVEGK--KHILIIEGATKADAAEYSVM 82 (103)
T ss_dssp CSBCCCCEEEETTEEEEEEEECSS-SSCC--CEEEETTEECCCSTTC--SEEEEEETT--EEEEEEEEECTTTCSEEEEE
T ss_pred eeccCCCEEEECCCCEEEEEEecC-CCCe--EEEEECCEECCCCCce--EEEEEEcCC--EEEEEECCCCcccCEEEEEE
Confidence 344566778999999999999965 4455 9999999877432211 223333332 24599999999999999999
Q ss_pred cccCCeeEEEEEEeec
Q psy13371 169 PSNADVASVYVHVLNG 184 (212)
Q Consensus 169 ~~n~~~~~~~~~v~~~ 184 (212)
+.| ....+.+.|...
T Consensus 83 a~n-~~~~~~l~V~~~ 97 (103)
T 1x44_A 83 TTG-GQSSAKLSVDLK 97 (103)
T ss_dssp ETT-EEEEEEEEEECC
T ss_pred ECC-CcEEEEEEEeCC
Confidence 998 455556666543
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-11 Score=73.92 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=55.7
Q ss_pred eCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
..+....+.+|+.+.|.|.+.+. |.|. +.|++++..+.. ..+......+. ...|.|.++..+|+|.|+|.+
T Consensus 6 ~~~~~~~v~~G~~v~l~C~~~g~~p~~~--v~W~~~~~~~~~----~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a 77 (97)
T 2bk8_A 6 GQIMHAVGEEGGHVKYVCKIENYDQSTQ--VTWYFGVRQLEN----SEKYEITYEDG--VAILYVKDITKLDDGTYRCKV 77 (97)
T ss_dssp CCCCCEEECTTCCEEEEEEEESCCTTCE--EEEEETTEECCS----SSSEEEEEETT--EEEEEECSCCGGGCEEEEEEE
T ss_pred ccCcCEEEcCCCcEEEEEEEeccCCCCE--EEEEECCEECcC----CCCEEEEEcCC--eEEEEEecCChhhCeEEEEEE
Confidence 34556789999999999999986 5554 999999987632 22222222222 245999999999999999999
Q ss_pred ccCC
Q psy13371 170 SNAD 173 (212)
Q Consensus 170 ~n~~ 173 (212)
.|..
T Consensus 78 ~n~~ 81 (97)
T 2bk8_A 78 VNDY 81 (97)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 9983
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=78.14 Aligned_cols=81 Identities=20% Similarity=0.356 Sum_probs=59.1
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+....+.+|+.+.|.|.+.+.|.|. +.|++++..+. . .+......+. .+.|.|.++..+|+|.|+|.|.|.
T Consensus 31 ~~~~~v~~G~~~~l~C~~~g~P~p~--i~W~k~g~~l~----~-~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~a~N~ 101 (118)
T 2e7c_A 31 RQTYIRKVGEQLNLVVPFQGKPRPQ--VVWTKGGAPLD----T-SRVHVRTSDF--DTVFFVRQAARSDSGEYELSVQIE 101 (118)
T ss_dssp SSCEEEESSSCEEEEEEEEEESCCE--EEEEETTEECC----C-SSCEEEECSS--EEEEEESSCCTTTCEEEEEEEECS
T ss_pred CCCEEEECCCEEEEEEEEccCCCCE--EEEEECCEECC----C-CcEEEEECCC--eEEEEECCCChhcCEEEEEEEEeC
Confidence 3567889999999999999988776 99999998873 1 1122222222 245999999999999999999997
Q ss_pred ---CeeEEEEEEe
Q psy13371 173 ---DVASVYVHVL 182 (212)
Q Consensus 173 ---~~~~~~~~v~ 182 (212)
....+.+.|.
T Consensus 102 ~G~~~~~~~l~V~ 114 (118)
T 2e7c_A 102 NMKDTATIRIRVV 114 (118)
T ss_dssp SCEECCEEEEEEE
T ss_pred CCeEEEEEEEEEE
Confidence 3344444443
|
| >1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-11 Score=96.50 Aligned_cols=162 Identities=11% Similarity=0.138 Sum_probs=96.2
Q ss_pred eeEeeeCCCCC----ceEEEEeeCcceeeeec-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc--
Q psy13371 2 LHQRKLKGLLP----TRVSWIRHRDIHILTVG-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV-- 74 (212)
Q Consensus 2 ~l~C~~~~~p~----~~v~W~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-- 74 (212)
.|.|.+.+... ..|+|++++........ ......++.+.+.. .|.|......|.+.|+|++.+...
T Consensus 362 ~l~C~~~~~~p~~~~i~v~W~~~~~~~~~~~t~~~~~~~n~~~~~~s-------~L~i~~~~~~~~~~y~C~v~~~~~~~ 434 (551)
T 1ntl_A 362 KVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVS-------ELPIMHQDWLNGKEFKCRVNSAAFPA 434 (551)
T ss_pred ceEEEEEecccCCCceEEEEEECCccccccccCCceECCCCeEEEEE-------eeEcCHHHccCCceEEEEEecCCCCC
Confidence 58999998744 58999998742211110 11112234444432 588888888889999999987532
Q ss_pred -eeEEEEEEE--ecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEE
Q psy13371 75 -RSFFVNLNV--VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTS 150 (212)
Q Consensus 75 -~~~~~~l~v--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 150 (212)
....+.+.+ ..+|.+...++......|+.++|.|.+.+..++.+.|.|.++++.+.. ..........++.. ..+
T Consensus 435 ~~~~~~~~~~~~~~~P~V~~~~~~~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~~--~~~~~~~~~~dgty~~~s 512 (551)
T 1ntl_A 435 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAEN--YKNTQPIMNTNGSYFVYS 512 (551)
T ss_pred CeEEEEecCCCCCcCCceEEeCCChhhccCCceEEEEEEEEeECCCCEEEEEECCEEccC--ceeccceeCCCCCEEEEE
Confidence 222333332 233433222222234568899999999987666678999999987641 11111122233322 223
Q ss_pred EEEEeeeeecCCEEEEEEcccC
Q psy13371 151 YLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 151 ~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|.+......+.+.|+|.+.|.
T Consensus 513 ~l~v~~~~~~~~~~ytC~V~h~ 534 (551)
T 1ntl_A 513 KLNVQKSNWEAGNTFTCSVLHE 534 (551)
T ss_pred EEEEcHHHcCCCCeEEEEEEEC
Confidence 4555444444578999999987
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-12 Score=78.72 Aligned_cols=78 Identities=22% Similarity=0.394 Sum_probs=58.7
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
+.....|....+.+|+.+.|.|.+.+.|.|. +.|++++..+. ...+......+. ...|.|.++..+|+|.|+
T Consensus 15 ~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~--v~W~k~g~~l~----~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~ 86 (106)
T 1nct_A 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPT--VTWLRKGQVLS----TSARHQVTTTKY--KSTFEISSVQASDEGNYS 86 (106)
T ss_dssp CEEEECCCCEEESSSSCEECCEEEECSSCCB--CCBCSSSSCCT----TCSSEEEEECSS--EEEEEECCCCSSCCSEEE
T ss_pred CEEEECCCCEEEeCCCcEEEEEEEEEcCCCE--EEEEECCEECC----CCCCEEEEECCC--EEEEEECcCCchhCEEEE
Confidence 3455567778899999999999999887776 99999987663 122222222221 246999999999999999
Q ss_pred EEcccC
Q psy13371 167 CSPSNA 172 (212)
Q Consensus 167 C~~~n~ 172 (212)
|.+.|.
T Consensus 87 C~a~N~ 92 (106)
T 1nct_A 87 VVVENS 92 (106)
T ss_dssp ECCBCS
T ss_pred EEEEeC
Confidence 999997
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-12 Score=77.19 Aligned_cols=74 Identities=19% Similarity=0.376 Sum_probs=54.5
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
....+.+|+.+.|.|.+.+.|.|. +.|++++..+......... .....+ ..|.|.++..+|+|.|+|.|.|..
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p~--v~W~~~~~~~~~~~~~~~~-~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~ 88 (100)
T 3caf_A 16 RLHAVPAANTVKFRCPAGGNPMPT--MRWLKNGKEFKQEHRIGGY-KVRNQH----WSLIMESVVPSDKGNYTCVVENEY 88 (100)
T ss_dssp CEEEECTTCCEEEECCEEEESCCE--EEEEETTEECCGGGSTTCC-EEEGGG----TEEEECSCCGGGCEEEEEEEEETT
T ss_pred cEEEecCCCEEEEEEEccccCCCE--EEEEECCEEcccccccccE-EEecCe----EEEEEccCCcCCCEEEEEEEEeCC
Confidence 346788999999999999887766 9999999877433222111 111111 249999999999999999999984
Q ss_pred e
Q psy13371 174 V 174 (212)
Q Consensus 174 ~ 174 (212)
+
T Consensus 89 g 89 (100)
T 3caf_A 89 G 89 (100)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-11 Score=90.30 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=93.3
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.+.|.|.+.+.|+|++. .+.... ..++.+. .......|.|.++..+|+|.|+|.+.|. +.....+.
T Consensus 119 ~l~C~~~g~p~~~i~W~~~g~--~l~~~~-----~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 189 (389)
T 2jll_A 119 NISCDVKSNPPASIHWRRDKL--VLPAKN-----TTNLKTY--STGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYI 189 (389)
T ss_dssp EEEECEEEESCCEEEEEETTE--ESSCTT-----CTTEEEE--ECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEecCCCeEEEEECCc--cCCccc-----CceEEEe--ccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEE
Confidence 689999999999999999873 222111 1244444 2335668999999999999999999986 44445555
Q ss_pred EEEecccceeeCCCceeeeCCCcEEEEeEEeeCC--CCC--ceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEee
Q psy13371 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSP--EPP--AYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 81 l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
+.+...|..... .......+..+.|.|...... .|. ..+.|...+... .......+. ...+.|.+
T Consensus 190 l~v~~~P~~P~~-~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~--------~~~~~~~~~--~~~~~i~~ 258 (389)
T 2jll_A 190 LALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEI--------WKIVRSHGV--QTMVVLNN 258 (389)
T ss_dssp EEECCCCCCCEE-EEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSC--------CEEEECSTT--CSEEEECS
T ss_pred EEecCCCCCCcc-eEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcc--------cEEeeccCC--cceEEECC
Confidence 655443321111 011223456788888753221 122 235676654311 111111111 12488999
Q ss_pred eeecCCEEEEEEcccC
Q psy13371 157 AELKDSGKYSCSPSNA 172 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~ 172 (212)
+...+.+.|.|.|.|.
T Consensus 259 l~~~~~y~~~v~A~N~ 274 (389)
T 2jll_A 259 LEPNTTYEIRVAAVNG 274 (389)
T ss_dssp CCTTCEEEEEEEEEES
T ss_pred ccCCCEEEEEEEEEcC
Confidence 9999999999999987
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=75.97 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=55.3
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCC-CCceEEEEEcCeEEEeeCCCCceeEEe----ecCceEEEEEEEeeeeecCC
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYHHDEVISYDSSRGGVSVIT----EKGEVTTSYLLIQQAELKDS 162 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~ 162 (212)
..+..|....+.+|+.++|.|.+.+.|. ....+.|++++... .......+.... .........|.|.+++.+|+
T Consensus 6 ~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 84 (108)
T 3cx2_A 6 LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVD-LSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT 84 (108)
T ss_dssp SCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEE-GGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGC
T ss_pred EEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCccc-ccccCCceEEEeeEEecccccceEEEEEecCCCccC
Confidence 3445667788999999999999998765 11349999976321 111111111111 11112345699999999999
Q ss_pred EEEEEEcccC
Q psy13371 163 GKYSCSPSNA 172 (212)
Q Consensus 163 g~y~C~~~n~ 172 (212)
|.|+|.+.|.
T Consensus 85 G~Y~C~a~N~ 94 (108)
T 3cx2_A 85 GSYRCEVSTK 94 (108)
T ss_dssp EEEEEEEECS
T ss_pred EEEEEEEecC
Confidence 9999999998
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.33 E-value=8.6e-12 Score=75.13 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=51.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+. .+.+.|+|++. .+.. ++|+.+.. ....++|.|.+++.+|+|.|+|.+.|. ...+.
T Consensus 23 v~l~C~v~~~-~~~v~W~k~g~-~i~~--------~~~~~i~~--~g~~~~L~I~~v~~~D~G~Y~C~a~n~---~~sa~ 87 (93)
T 1waa_A 23 AHFEIELSEP-DVHGQWKLKGQ-PLAA--------SPDCEIIE--DGKKHILILHNCQLGMTGEVSFQAANT---KSAAN 87 (93)
T ss_dssp EEEEEEESSS-SCCCEEEETTE-ECCC--------BTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEETTE---EEEEE
T ss_pred EEEEEEECCC-CCeEEEEECCE-ECcC--------CCCEEEEE--ECCEEEEEECCCChhhCEEEEEEECCC---cEEEE
Confidence 3689999874 58899999873 2222 34666652 345678999999999999999999873 45566
Q ss_pred EEEec
Q psy13371 81 LNVVV 85 (212)
Q Consensus 81 l~v~~ 85 (212)
|.|.+
T Consensus 88 L~V~~ 92 (93)
T 1waa_A 88 LKVKE 92 (93)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 66653
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.33 E-value=7e-12 Score=77.04 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=53.4
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCce--EEEee-CCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRF--SAIHR-REGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~--~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
.|.|.+.|.|.|.+.|+|++. .+... .+. ..... .......|.|.+++.+|+|.|+|.+.|. +..+.
T Consensus 20 ~~~c~v~G~P~P~i~W~k~g~--~l~~~-------~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 90 (103)
T 1wwb_X 20 CIPFTVKGNPKPALQWFYNGA--ILNES-------KYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK 90 (103)
T ss_dssp EEEEEEECSSCCEEEEEETTE--EECCC-------SSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred EEEEEEEEeCCCEEEEEECCE--ECCCC-------CcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeE
Confidence 488999999999999999773 22211 121 11111 1112456999999999999999999996 56666
Q ss_pred EEEEEEeccc
Q psy13371 78 FVNLNVVVPT 87 (212)
Q Consensus 78 ~~~l~v~~~~ 87 (212)
.+.|.|..+|
T Consensus 91 ~~~l~V~~~P 100 (103)
T 1wwb_X 91 QISAHFMGWP 100 (103)
T ss_dssp EEEECCSCCC
T ss_pred EEEEEECCCC
Confidence 7777665543
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-11 Score=77.68 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=58.5
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEee--CCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYD--SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
....+.+|+.+.|.|.+.+.|.|...+.|++++..+... .................+.|.|.+++.+|+|.|+|.|.|
T Consensus 16 ~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 95 (122)
T 3s35_X 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 95 (122)
T ss_dssp SCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred CCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEcc
Confidence 345788999999999999877666679999987643210 001111111111111335699999999999999999999
Q ss_pred CC---eeEEEEEEee
Q psy13371 172 AD---VASVYVHVLN 183 (212)
Q Consensus 172 ~~---~~~~~~~v~~ 183 (212)
.. ...+.+.|..
T Consensus 96 ~~g~~~~~~~l~V~~ 110 (122)
T 3s35_X 96 GLMTKKNSTFVRVHE 110 (122)
T ss_dssp SSCEEEEEEEEEEEE
T ss_pred CCCceEEEEEEEEec
Confidence 73 3444555543
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-12 Score=77.46 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=55.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.|.+.|+|++. .+.. +.++.+. .......|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 26 v~l~C~~~g~p~p~i~W~k~~~-~~~~--------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 94 (103)
T 3qp3_A 26 TRFILNVQSKPTAEVKWYHNGV-ELQE--------SSKIHYT--NTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYA 94 (103)
T ss_dssp EEEEEEEEEESCCEEEEEETTE-ECCC--------CSSEEEE--EETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEecCCCEEEEEECCE-ECCC--------CCCEEEE--ECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEE
Confidence 3689999999999999999773 2221 2355554 2345678999999999999999999986 4556666
Q ss_pred EEEEec
Q psy13371 80 NLNVVV 85 (212)
Q Consensus 80 ~l~v~~ 85 (212)
.|.|..
T Consensus 95 ~l~V~~ 100 (103)
T 3qp3_A 95 TLDVTG 100 (103)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 776654
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=80.75 Aligned_cols=84 Identities=24% Similarity=0.366 Sum_probs=61.5
Q ss_pred EecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCC
Q psy13371 83 VVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162 (212)
Q Consensus 83 v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 162 (212)
+..+|.+...+....+..|+.+.|.|.+.+.|.|. +.|++++..+.. ..+........ ....|.|.++..+|+
T Consensus 38 v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~--v~W~k~g~~~~~----~~~~~~~~~~~-~~~~L~I~~v~~~D~ 110 (154)
T 1fhg_A 38 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKE----SRHFQIDYDEE-GNCSLTISEVCGDDD 110 (154)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCE--EEEEETTEECCC----SSSEEEEECTT-CEEEEEESSCCGGGC
T ss_pred CCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCE--EEEEECCEECCC----CCcEEEEECCC-CeEEEEECCCChhcC
Confidence 33455555666778899999999999999887776 999999987732 12222221111 124699999999999
Q ss_pred EEEEEEcccCC
Q psy13371 163 GKYSCSPSNAD 173 (212)
Q Consensus 163 g~y~C~~~n~~ 173 (212)
|.|+|.|.|..
T Consensus 111 G~Y~C~a~N~~ 121 (154)
T 1fhg_A 111 AKYTCKAVNSL 121 (154)
T ss_dssp EEEEEEEEETT
T ss_pred EEEEEEEEECC
Confidence 99999999983
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=75.80 Aligned_cols=88 Identities=23% Similarity=0.456 Sum_probs=61.9
Q ss_pred ccceeeCCCc---eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCC
Q psy13371 86 PTAEILGSPD---LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162 (212)
Q Consensus 86 ~~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 162 (212)
+|..+..+.. ..+.+|+.+.|.|.+.+.+.+ +.|++++..+... .+.....++. ...|.|.++..+|+
T Consensus 7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~---v~W~k~g~~~~~~----~~~~~~~~~~--~~~L~I~~~~~~D~ 77 (104)
T 2e6p_A 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP---ATWYKDGQKVEES----ELLVVKMDGR--KHRLILPEAKVQDS 77 (104)
T ss_dssp SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC---CEEEETTEECCCB----TTBEEEEETT--EEEEEESSCCTTTC
T ss_pred CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc---cEEeeCCEECCCC----CCEEEEeCCC--EEEEEECCCChhhC
Confidence 4444555555 688999999999999877544 7999999877422 1222333332 24599999999999
Q ss_pred EEEEEEcccCCeeEEEEEEee
Q psy13371 163 GKYSCSPSNADVASVYVHVLN 183 (212)
Q Consensus 163 g~y~C~~~n~~~~~~~~~v~~ 183 (212)
|.|+|.+.|... .+.+.|..
T Consensus 78 G~Y~C~a~n~~~-~~~l~V~~ 97 (104)
T 2e6p_A 78 GEFECRTEGVSA-FFGVTVQD 97 (104)
T ss_dssp EEEEEECSSCCC-CEEEEEEC
T ss_pred EEEEEEECCceE-EEEEEEcC
Confidence 999999999733 45555543
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-12 Score=79.26 Aligned_cols=81 Identities=22% Similarity=0.403 Sum_probs=58.5
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.+...+....+.+|+.+.|.|.+.+.|.|. +.|++++..+... ..+........ ....|.|.++..+|+|.|
T Consensus 8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~--v~W~k~g~~~~~~---~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y 81 (110)
T 2dm2_A 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPK--IYWFKDGKQISPK---SDHYTIQRDLD-GTCSLHTTASTLDDDGNY 81 (110)
T ss_dssp CCCBSSCCCCEEEETTCCEEEEEEBCCSSCCE--EEEECSSCBCCTT---CSSEEEEECTT-CEEEEEESSCCTTTCSCC
T ss_pred CCEEEecCcCeEEeCCCeEEEEEEEEecCCCE--EEEEECCEECCCC---CCeEEEEECCC-cEEEEEECCCChhhCEEE
Confidence 34444556677899999999999998877665 9999998876321 12222222211 114599999999999999
Q ss_pred EEEcccC
Q psy13371 166 SCSPSNA 172 (212)
Q Consensus 166 ~C~~~n~ 172 (212)
+|.|.|.
T Consensus 82 ~C~a~N~ 88 (110)
T 2dm2_A 82 TIMAANP 88 (110)
T ss_dssp EEEEECT
T ss_pred EEEEEEC
Confidence 9999997
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=80.26 Aligned_cols=92 Identities=22% Similarity=0.387 Sum_probs=63.5
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+.... .......... ...|.|.++..+|+|.|
T Consensus 9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~--v~W~~~g~~~~~~~---~~~~~~~~~~--~~~L~i~~v~~~D~G~Y 81 (110)
T 2dm3_A 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPD--LSWQLDGKPVRPDS---AHKMLVRENG--VHSLIIEPVTSRDAGIY 81 (110)
T ss_dssp CCEEEECCCEEEEESSSCBCCEEEEECSSCCE--EECBBSSSBCCCCS---SEEEEECTTS--CEEEEESSCCGGGCSBB
T ss_pred CCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCE--EEEEECCEECCCCC---ceEEEEecCC--eEEEEEeeCCcccCEEE
Confidence 34455566778899999999999999887665 99999988763221 1111221111 14599999999999999
Q ss_pred EEEcccCC---eeEEEEEEeec
Q psy13371 166 SCSPSNAD---VASVYVHVLNG 184 (212)
Q Consensus 166 ~C~~~n~~---~~~~~~~v~~~ 184 (212)
+|.|.|.. ...+.+.|...
T Consensus 82 ~C~a~n~~g~~~~~~~l~V~~~ 103 (110)
T 2dm3_A 82 TCIATNRAGQNSFSLELVVAAK 103 (110)
T ss_dssp CEEEECSSCEEEECCEEEEECC
T ss_pred EEEEECCCCEEEEEEEEEEeCC
Confidence 99999973 33345555433
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-13 Score=85.43 Aligned_cols=94 Identities=23% Similarity=0.274 Sum_probs=66.1
Q ss_pred EEEEEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEE--eecCceEEEEEEE
Q psy13371 77 FFVNLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI--TEKGEVTTSYLLI 154 (212)
Q Consensus 77 ~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i 154 (212)
..+.|.|..+|.... +....+.+|+.+.|.|.+.+.|.|. .+.|++++..+..... .+... ........+.|.|
T Consensus 5 ~~~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~-~i~W~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~L~I 80 (122)
T 2cry_A 5 SSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKENVLESGTS--GRYTVETISTEEGVISTLTI 80 (122)
T ss_dssp CCCCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCS-EEEEESSSCEECSEEE--TTEEEEEEEETTEEEEEEEC
T ss_pred eEEEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCc-EeEEEECCEEccCCCC--CCEEEEEecCCCceEEEEEE
Confidence 344566767776555 6677889999999999999887553 4899999987743211 11222 1122223456999
Q ss_pred eeeeecCC-EEEEEEcccCCe
Q psy13371 155 QQAELKDS-GKYSCSPSNADV 174 (212)
Q Consensus 155 ~~~~~~d~-g~y~C~~~n~~~ 174 (212)
.++..+|. |.|+|.|.|..+
T Consensus 81 ~~v~~~D~~G~Y~C~a~N~~G 101 (122)
T 2cry_A 81 SNIVRADFQTIYNCTAWNSFG 101 (122)
T ss_dssp TTCCHHHHHSCEEEEEECSSC
T ss_pred cCCChhhCCceEEEEEECCCC
Confidence 99999999 999999999843
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-12 Score=79.39 Aligned_cols=88 Identities=30% Similarity=0.477 Sum_probs=62.8
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+... ..+.....++ .|.|.++..+|+|.|
T Consensus 8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~--i~W~k~g~~~~~~---~~~~~~~~~~-----~L~i~~v~~~D~G~Y 77 (118)
T 2eo9_A 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPT--ILWRKDGVLVSTQ---DSRIKQLENG-----VLQIRYAKLGDTGRY 77 (118)
T ss_dssp SCCCSBCCCCEEEETTCEEEEECBCCCSSCCE--EEEEESSSBCCTT---STTEEEEETT-----EEEEESCCGGGCCCE
T ss_pred CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCE--EEEEECCEECcCC---CCeEEEccCC-----EEEEccCCcCCCEEE
Confidence 34444556677899999999999998877665 9999998876321 1223333333 499999999999999
Q ss_pred EEEcccCC---eeEEEEEEee
Q psy13371 166 SCSPSNAD---VASVYVHVLN 183 (212)
Q Consensus 166 ~C~~~n~~---~~~~~~~v~~ 183 (212)
+|.|.|.. ...+.+.|..
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~~ 98 (118)
T 2eo9_A 78 TCIASTPSGEATWSAYIEVQE 98 (118)
T ss_dssp EEEEECSSCEEEEECCEEEEC
T ss_pred EEEEEcCCCcEEEEEEEEEEe
Confidence 99999983 2334444443
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.5e-12 Score=78.10 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=57.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.|.+.|+|++. .+.. .+.++.+.. ...+...|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 26 v~l~C~~~g~p~p~v~W~k~g~--~~~~------~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~ 96 (110)
T 2dm2_A 26 VTFTCRVAGNPKPKIYWFKDGK--QISP------KSDHYTIQR-DLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTG 96 (110)
T ss_dssp EEEEEEBCCSSCCEEEEECSSC--BCCT------TCSSEEEEE-CTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECC
T ss_pred EEEEEEEEecCCCEEEEEECCE--ECCC------CCCeEEEEE-CCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEE
Confidence 3689999999999999999773 2221 134565553 2345568999999999999999999986 4556666
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|..++
T Consensus 97 ~l~V~~~~ 104 (110)
T 2dm2_A 97 RLMVQAVN 104 (110)
T ss_dssp CEEEECCS
T ss_pred EEEEECCC
Confidence 77776544
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-11 Score=75.25 Aligned_cols=91 Identities=20% Similarity=0.307 Sum_probs=62.6
Q ss_pred EecccceeeCCCc---eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 83 VVVPTAEILGSPD---LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 83 v~~~~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
|..++..+..+.. ..+.+|+.+.|.|.+. .|.+. +.|++++..+... .+.....++. ...|.|.++..
T Consensus 7 v~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~--v~W~k~g~~~~~~----~~~~~~~~~~--~~~L~I~~v~~ 77 (113)
T 2cpc_A 7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAE--VRWTKDGEEVVES----PALLLQKEDT--VRRLVLPAVQL 77 (113)
T ss_dssp CCSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCC--CEEEETTEECCCB----TTBEEEECSS--EEEEEESSCCT
T ss_pred cccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCe--EEEEECCEECccC----CCEEEEECCC--EEEEEECCCCc
Confidence 3345555544443 5788999999999994 55555 9999999877422 2223333332 13599999999
Q ss_pred cCCEEEEEEcccCCeeEEEEEEee
Q psy13371 160 KDSGKYSCSPSNADVASVYVHVLN 183 (212)
Q Consensus 160 ~d~g~y~C~~~n~~~~~~~~~v~~ 183 (212)
+|+|.|+|.+.| ....+.+.|..
T Consensus 78 ~D~G~Y~C~a~n-~~~~~~l~V~~ 100 (113)
T 2cpc_A 78 EDSGEYLCEIDD-ESASFTVTVTE 100 (113)
T ss_dssp TTCEEEEEESSS-CEEEEEEEEEC
T ss_pred ccCEEEEEEEec-CcEEEEEEEec
Confidence 999999999999 55556666643
|
| >2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-11 Score=83.47 Aligned_cols=151 Identities=15% Similarity=0.087 Sum_probs=87.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC---C
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ---P 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~ 73 (212)
+.|.|.+.+.....+.|+|..... +...........+||.+..+...+..+|+|.+++.+|+|.|.|.+... .
T Consensus 17 vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~ 96 (200)
T 2nw2_A 17 VQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSY 96 (200)
T ss_dssp EEEEEECCCSSCCCEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC---CCC
T ss_pred EEEEEEECCCCCceEEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCcccCCcEEEEEEcCCcce
Confidence 468999988776789999976421 111111111126899998766778899999999999999999998751 1
Q ss_pred ce--eEEEEEEEeccc----ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce
Q psy13371 74 VR--SFFVNLNVVVPT----AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147 (212)
Q Consensus 74 ~~--~~~~~l~v~~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (212)
.. -....|.|.... +.+..+ ......++|.|.+.+..++ ..+.+ ++ ......+..
T Consensus 97 ~~~fg~gt~L~V~~~~~~~~P~V~~~----~~~~~~~tl~Cl~~gf~P~-~~v~~---~~--------~~~~~~t~~--- 157 (200)
T 2nw2_A 97 IPTFGRGTSLIVHPYIQNPDPAVYQL----RDSKSSDKSVCLFTDFDSQ-TNVSQ---SK--------DSDVYITDK--- 157 (200)
T ss_dssp CCEECCCEEEEEECCCSSCCCEEEEE----EECC--CCEEEEEESCCTT-CCCCC---CS--------SSSEEECCC---
T ss_pred eeeeCCCEEEEEecCcccCCCeEEEc----CCCCCCceEEEEeecccCC-cEeec---cc--------ccceEecCc---
Confidence 11 123456665421 111111 1123378999999887533 44311 11 011111111
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..|.+......+.+.|+|.+.|.
T Consensus 158 --~~l~~~~~~~~~~~~~~~~~~~~ 180 (200)
T 2nw2_A 158 --CVLDMRSMDFKSNSAVAWSNKSD 180 (200)
T ss_dssp --EEEEEGGGTEEEEEEEEEESSSS
T ss_pred --hhhhhhhcccccccceeccCCCc
Confidence 12445555556667888888765
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7.5e-12 Score=75.39 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=50.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++....+.. ..... .......|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 20 ~~l~C~~~g~P~p~i~W~k~~~~~~~~~---------~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 88 (93)
T 1wit_A 20 HNLEVDFIGAPDPTATWTVGDSGAALAP---------ELLVD--AKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIF 88 (93)
T ss_dssp CEEEEEEECCSSCEEEEECSTTTCBCST---------TSEEE--EETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEECCCCcccCC---------cEEEE--ecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEE
Confidence 4699999999999999999872111211 11111 1234568999999999999999999996 4445555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 89 ~l~V 92 (93)
T 1wit_A 89 EVIV 92 (93)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.32 E-value=4.4e-11 Score=73.45 Aligned_cols=79 Identities=10% Similarity=0.209 Sum_probs=55.4
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeE-EeecCceEEEEEEEeeeeecCCEEEEEEcccC-CeeE
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV-ITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA-DVAS 176 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~-~~~~ 176 (212)
..++.+.|.|.+.|.|.|. +.|++++..+.... ..... .........+.|.|.++..+|+|.|+|.|.|. ....
T Consensus 14 ~~~~~~~~~c~v~G~P~P~--i~W~k~g~~l~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 89 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPA--LQWFYNGAILNESK--YICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDE 89 (103)
T ss_dssp CCCCEEEEEEEEECSSCCE--EEEEETTEEECCCS--SEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEE
T ss_pred eECcEEEEEEEEEEeCCCE--EEEEECCEECCCCC--cEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEe
Confidence 4577899999999998887 99999999874321 11011 11222334466999999999999999999998 3333
Q ss_pred EEEEE
Q psy13371 177 VYVHV 181 (212)
Q Consensus 177 ~~~~v 181 (212)
..+.+
T Consensus 90 ~~~~l 94 (103)
T 1wwb_X 90 KQISA 94 (103)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 33433
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=78.04 Aligned_cols=88 Identities=13% Similarity=0.234 Sum_probs=61.0
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.....+.+..+.+|+.+.|.|.+.+.| +. +.|++++..+........++....++. ...|.|.++..+|+|.|+|
T Consensus 10 ~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~--v~W~k~g~~i~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C 84 (101)
T 2edk_A 10 LIVTPLEDQQVFVGDRVEMAVEVSEEG-AQ--VMWMKNGVELTREDSFKARYRFKKDGK--RHILIFSDVVQEDRGRYQV 84 (101)
T ss_dssp CEEECCCCEEEESSCCCBCCEEESCSS-CC--CEEEESSCBCCCSCCSSCCCEEEECSS--EEEEECSSCCGGGCSBEEE
T ss_pred EEEecCCceEEcCCCCEEEEEEEeCCC-CE--EEEEECCEECCCCCCcceeEEEEECCC--EEEEEECCCChhhCEEEEE
Confidence 344456677899999999999998776 65 999999987743321100223333333 2459999999999999999
Q ss_pred EcccCCeeEEEEEE
Q psy13371 168 SPSNADVASVYVHV 181 (212)
Q Consensus 168 ~~~n~~~~~~~~~v 181 (212)
.+.|. .....+.|
T Consensus 85 ~a~n~-~~~~~l~V 97 (101)
T 2edk_A 85 ITNGG-QCEAELIV 97 (101)
T ss_dssp ECSSC-EECCBEEE
T ss_pred EEcCC-cEEEEEEE
Confidence 99983 33344444
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-11 Score=78.44 Aligned_cols=85 Identities=19% Similarity=0.286 Sum_probs=63.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.|.+.+.|++.+...+ .........++|+..... ...+.+|+|.+++.+|+|.|+|.+.+.+.....+.
T Consensus 56 v~L~C~~~~~~~~~i~W~~~~~~~i-~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~ 133 (145)
T 1z9m_A 56 VVLKCQVKDHEDSSLQWSNPAQQTL-YFGEKRALRDNRIQLVTS-TPHELSISISNVALADEGEYTCSIFTMPVRTAKSL 133 (145)
T ss_dssp EEEEEECSCCTTCCEEEECTTCCEE-EETTEECSCCTTEEEEEE-CSSEEEEEECSCCGGGCEEEEEEECSSSCEEEEEE
T ss_pred EEEEEEEcCCCCcEEEEECCCCcEE-EECCceecccCCEEEecC-CCCeEEEEECCCChhhCEEEEEEEEcCCCceEEEE
Confidence 3699999999999999997654332 222222234578887643 45678999999999999999999998755667778
Q ss_pred EEEeccc
Q psy13371 81 LNVVVPT 87 (212)
Q Consensus 81 l~v~~~~ 87 (212)
|.|..+|
T Consensus 134 L~V~~~P 140 (145)
T 1z9m_A 134 VTVLGIP 140 (145)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 8887655
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.31 E-value=8.3e-12 Score=76.03 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=53.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.++.... ...+...|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 23 v~l~C~~~g~p~p~v~W~k~g~-~~~~--------~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~ 92 (99)
T 1g1c_A 23 AHFRVRVVGKPDPECEWYKNGV-KIER--------SDRIYWYW-PEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHA 92 (99)
T ss_dssp EEEEEEEEEESCCEEEEEETTE-ECCC--------CSSEEEEE-EETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEeCCCEEEEEECCE-ECCC--------CCCEEEEE-cCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEE
Confidence 3689999999999999999873 2221 23443331 2345678999999999999999999986 4455566
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 93 ~l~V~ 97 (99)
T 1g1c_A 93 FLLVQ 97 (99)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66654
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.4e-12 Score=75.99 Aligned_cols=74 Identities=28% Similarity=0.470 Sum_probs=53.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.|.+.|+|++. .+... +.++... ...+...|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 23 v~l~C~~~g~p~p~v~W~k~~~--~~~~~------~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~ 92 (99)
T 1u2h_A 23 VIMSIRVQGEPKPVVSWLRNRQ--PVRPD------QRRFAEE--AEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEA 92 (99)
T ss_dssp EEEEEEEEEESCCEEEEEETTE--ECCCB------TTEEEEE--CGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEECCE--ECCCC------CCEEEEE--CCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEE
Confidence 3689999999999999999873 22211 2233333 3334568999999999999999999986 4455566
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 93 ~l~V~ 97 (99)
T 1u2h_A 93 RLEVR 97 (99)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.31 E-value=9.6e-12 Score=82.16 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=58.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+. .+.++.+.. ...+...|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 59 v~L~C~~~g~P~p~v~W~k~g~--~~~-------~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 128 (154)
T 1fhg_A 59 ARFDCKVEGYPDPEVMWFKDDN--PVK-------ESRHFQIDY-DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128 (154)
T ss_dssp EEEEEEEEEESCCEEEEEETTE--ECC-------CSSSEEEEE-CTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEecCCEEEEEECCE--ECC-------CCCcEEEEE-CCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEE
Confidence 3689999999999999999873 222 134555542 2345678999999999999999999986 4556677
Q ss_pred EEEEeccccee
Q psy13371 80 NLNVVVPTAEI 90 (212)
Q Consensus 80 ~l~v~~~~~~~ 90 (212)
.|.|..++...
T Consensus 129 ~l~V~~~p~~~ 139 (154)
T 1fhg_A 129 ELLVETMGKEG 139 (154)
T ss_dssp EEEEECC----
T ss_pred EEEEeCcCcCC
Confidence 78887766443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-12 Score=95.70 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=53.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.| |.|.+.|+++++..... . ..+.|+.+. +++|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 264 ~~l~C~~~g-p~p~i~W~~~~~~~~~~-~----~~~~r~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~ 331 (361)
T 2xot_A 264 LTIRCDTKQ-QGMTKVWVSPSNEQVLS-Q----GSNGSVSVR------NGDLFFKKVQVEDGGVYTCYAMGETFNETLSV 331 (361)
T ss_dssp EEECCCCSS-TTCEEEEECTTSCBCCS-C----CSSSSEEEE------TTEEEESSCCTTSCEEEEEEEECSSCEEEEEE
T ss_pred EEEEeEeeC-CCCeEEEEeCCCeeEee-c----ccCCceEee------cCeEEEeecCcccCEEEEEEEecCCCccEEEE
Confidence 368999999 99999999976422211 1 113355551 236999999999999999999996 4556666
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCC
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPP 117 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~ 117 (212)
.+.|...+ .+|+.+.+.|.+.+.|.|.
T Consensus 332 ~l~V~~~~-----------~~g~~~~l~C~~~g~P~P~ 358 (361)
T 2xot_A 332 ELKVYNFT-----------LHGHHDTLNAAADPWSHPQ 358 (361)
T ss_dssp EEEEESSC-----------CC-----------------
T ss_pred EEEEEeee-----------ccCCceEEEEEeCCCCCCc
Confidence 77764321 5678899999999998776
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=74.23 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=54.8
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.+. |.|.+.|+|++. .+. .+.++.+.. ..+...|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 19 v~l~C~~~g~~p~~~v~W~~~~~--~~~-------~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 87 (97)
T 2bk8_A 19 VKYVCKIENYDQSTQVTWYFGVR--QLE-------NSEKYEITY--EDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSY 87 (97)
T ss_dssp EEEEEEEESCCTTCEEEEEETTE--ECC-------SSSSEEEEE--ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred EEEEEEEeccCCCCEEEEEECCE--ECc-------CCCCEEEEE--cCCeEEEEEecCChhhCeEEEEEEECCCCeEeEE
Confidence 3689999997 999999999873 221 234666542 345678999999999999999999986 445556
Q ss_pred EEEEEe
Q psy13371 79 VNLNVV 84 (212)
Q Consensus 79 ~~l~v~ 84 (212)
+.|.|.
T Consensus 88 ~~l~V~ 93 (97)
T 2bk8_A 88 AELFVK 93 (97)
T ss_dssp EEEEET
T ss_pred EEEEEE
Confidence 666654
|
| >3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=84.81 Aligned_cols=125 Identities=15% Similarity=0.133 Sum_probs=80.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeec-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVG-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-- 73 (212)
+.|.|.+.+.....+.|+|..... +.... .......+||.+..+......+|+|.+++.+|+|.|.|.+....
T Consensus 18 vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~~~ 97 (200)
T 3rgv_A 18 LFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQ 97 (200)
T ss_dssp EEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCEEEEEEEESSSCC
T ss_pred EEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcCccCCCEEEEeccCccc
Confidence 468999988766789999975321 11111 11112357999886666778899999999999999999986421
Q ss_pred ceeEEEEEEEecc---c-ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEE
Q psy13371 74 VRSFFVNLNVVVP---T-AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130 (212)
Q Consensus 74 ~~~~~~~l~v~~~---~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~ 130 (212)
..-....|.|... + +.+..+. .....++|.|.+.+..+ ...+.|.++|..+.
T Consensus 98 ~fG~GT~L~V~~~~~~~~P~V~~~~----~~~~~~tl~Cl~~gf~P-~i~v~~~~~g~~~~ 153 (200)
T 3rgv_A 98 RFGTGTKLQVVPNIQNPDPAVYQLR----DSKSSDKSVCLFTDFDS-QTNVSQSKDSDVYI 153 (200)
T ss_dssp CCCCCEEEEEECCCSSCCCEEEEEE----ESSSSSCEEEEEESCCT-TCCCCCCSSTTCEE
T ss_pred ccCcCEEEEEeCCCCCCCCeEEEcc----CCCCCceEEEEcccccC-CeEeEeccCCcEEe
Confidence 1112235666542 1 2221111 11234789999998765 77899999987763
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-12 Score=81.11 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=53.9
Q ss_pred eeEeeeCCC---CCceEEEEeeCcceeeeecceeeecCCceEEEee--C--CCCeEEEEEcccCCCCCEEEEEEecCC-C
Q psy13371 2 LHQRKLKGL---LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHR--R--EGDEWTLHIKWAQKRDAGVYECQLSTQ-P 73 (212)
Q Consensus 2 ~l~C~~~~~---p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~ 73 (212)
.|.|.+.+. |.|.|.|+|+.... .... ...++.+... . ...+.+|+|.+++.+|+|.|+|++.+. +
T Consensus 26 ~L~C~v~g~~~~p~P~V~W~Kgk~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g 99 (126)
T 2dav_A 26 TFIAKVKAEDLLRKPTIKWFKGKWMD-LASK-----AGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDK 99 (126)
T ss_dssp EEEEEEECCCSSSCCEEEEEESSSCC-HHHH-----TTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSC
T ss_pred EEEEEEeccCCCCCCcEEEeeCcCcc-cCCC-----CCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCC
Confidence 689999875 89999999964111 1000 0123333210 1 112578999999999999999999996 4
Q ss_pred ceeEEEEEEEec
Q psy13371 74 VRSFFVNLNVVV 85 (212)
Q Consensus 74 ~~~~~~~l~v~~ 85 (212)
..+..++|+|.+
T Consensus 100 ~~~~~~~L~V~~ 111 (126)
T 2dav_A 100 FDSCSFDLEVHE 111 (126)
T ss_dssp EEEECCEEEEEC
T ss_pred cEEEEEEEEEEe
Confidence 667788899987
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.3e-12 Score=78.62 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=54.2
Q ss_pred eeEeeeCCC---CCceEEEEeeCcceeeeecceeeecCCceEEEeeC----CCCeEEEEEcccCCCCCEEEEEEecCC-C
Q psy13371 2 LHQRKLKGL---LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR----EGDEWTLHIKWAQKRDAGVYECQLSTQ-P 73 (212)
Q Consensus 2 ~l~C~~~~~---p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~ 73 (212)
.|.|.+.+. |.|.|.|+|+.... .... ...++.+.... ...+++|+|.+++.+|+|.|+|++.+. +
T Consensus 31 ~L~C~v~g~~~~p~P~V~W~Kgk~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g 104 (118)
T 2edn_A 31 VVVAKVNGKELPDKPTIKWFKGKWLE-LGSK-----SGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDT 104 (118)
T ss_dssp ECCEEEETTTSSSCCCCEEEETTTCC-CCCS-----TTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSSC
T ss_pred EEEEEEeccCCCCCCcEEEeeCCEec-cCCC-----CccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcCC
Confidence 689999885 78999999964211 1111 02234432111 112578999999999999999999996 5
Q ss_pred ceeEEEEEEEecc
Q psy13371 74 VRSFFVNLNVVVP 86 (212)
Q Consensus 74 ~~~~~~~l~v~~~ 86 (212)
..++.+.|+|.++
T Consensus 105 ~~s~~~~L~V~~~ 117 (118)
T 2edn_A 105 CDSCGFNIDVEAP 117 (118)
T ss_dssp EEEEEECCEEECC
T ss_pred cEEEEEEEEEEcC
Confidence 6677888888754
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-12 Score=77.52 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=53.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.|.+.|+|++. .+.. .+.++... .+..|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 26 ~~l~C~~~g~p~p~v~W~~~~~-~~~~-------~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 92 (100)
T 2edj_A 26 ALLKCKATGDPLPVISWLKEGF-TFPG-------RDPRATIQ-----EQGTLQIKNLRISDTGTYTCVATSSSGETSWSA 92 (100)
T ss_dssp EEECCEEECSSCCEEEEEESSS-EESS-------SCSSCEEC-----TTCCEEEESCCTTTCCEEEEEEECSSCCCBCCE
T ss_pred EEEEEEEEEcCCCEEEEEECCE-ECCC-------CCCCEEEc-----CCCEEEEccCCcccCEEEEEEEEcCCCCEEEEE
Confidence 3689999999999999999773 2211 12344443 2337999999999999999999986 4556667
Q ss_pred EEEEecc
Q psy13371 80 NLNVVVP 86 (212)
Q Consensus 80 ~l~v~~~ 86 (212)
.|.|.++
T Consensus 93 ~l~V~~~ 99 (100)
T 2edj_A 93 VLDVTES 99 (100)
T ss_dssp EEEEESC
T ss_pred EEEEecC
Confidence 7777654
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.6e-11 Score=72.78 Aligned_cols=85 Identities=19% Similarity=0.351 Sum_probs=57.0
Q ss_pred cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-EEEeeCC---CCceeEEeecCceEEEEEEEeeeeec
Q psy13371 85 VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-VISYDSS---RGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
.++.....+.+..+.+|+.+.|.|.+.+.+.+. +.|++++. .+..... ...+........ ....|.|.+++.+
T Consensus 5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~--v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~L~I~~v~~~ 81 (108)
T 3m45_A 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDNRIELVRASW-HELSISVSDVSLS 81 (108)
T ss_dssp ---CCCEECCCEEEETTSCEEEEEEESSCSSCC--EEEECTTCCEEEETTEECSCCTTEEEEEESS-SEEEEEECSCCGG
T ss_pred cCCCccccCCeeEEEeCCcEEEEeEEcCCCccE--EEEEcCCCceEEEcCCcccccCcEEEeecCC-CcEEEEECCCChh
Confidence 344555667788999999999999998876666 99998876 2221110 111222211111 2356999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|+|.+.|.
T Consensus 82 D~G~Y~C~~~n~ 93 (108)
T 3m45_A 82 DEGQYTCSLFTM 93 (108)
T ss_dssp GCEEEEEEECSS
T ss_pred HCeEEEEEEEcC
Confidence 999999999984
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-11 Score=75.29 Aligned_cols=96 Identities=22% Similarity=0.330 Sum_probs=66.2
Q ss_pred eEEEEEEEeccc-ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEE
Q psy13371 76 SFFVNLNVVVPT-AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154 (212)
Q Consensus 76 ~~~~~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 154 (212)
+..+.|.|...| .....+....+.+|+.+.|.|.+.+. |. +.|++++..+.. ..+.....++. ...|.|
T Consensus 8 ~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~--v~W~k~~~~l~~----~~~~~~~~~~~--~~~L~I 77 (113)
T 2edh_A 8 RTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--AP--VEWWKGHETLRD----GDRHSLRQDGA--RCELQI 77 (113)
T ss_dssp CCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CC--CEEEESSSBCCC----SSSEEEEEETT--EEEEEE
T ss_pred cEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--Cc--EEEEECCEECCC----CCcEEEEECCC--EEEEEE
Confidence 344556666544 44556677789999999999999653 55 899999987732 22333443443 235999
Q ss_pred eeeeecCCEEEEEEcccCCeeEEEEEEe
Q psy13371 155 QQAELKDSGKYSCSPSNADVASVYVHVL 182 (212)
Q Consensus 155 ~~~~~~d~g~y~C~~~n~~~~~~~~~v~ 182 (212)
.++..+|+|.|+|.+ ........+.|.
T Consensus 78 ~~v~~~D~G~Y~C~a-~~~~~~~~l~V~ 104 (113)
T 2edh_A 78 RGLVAEDAGEYLCMC-GKERTSAMLTVR 104 (113)
T ss_dssp CSCCSTTCEEEEEEE-TTEEEEEEEEEC
T ss_pred CCCChhhCEEEEEEe-CCCCEEEEEEEe
Confidence 999999999999999 334444555553
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=74.23 Aligned_cols=68 Identities=22% Similarity=0.437 Sum_probs=54.0
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
...|....+.+|+.+.|.|.+.+.|.|. +.|++++..+.... . ..|.|.++..+|+|.|+|.+
T Consensus 7 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~--i~W~~~~~~~~~~~----------~-----~~L~i~~v~~~d~G~Y~C~a 69 (91)
T 3bfo_A 7 CVEPTSQKLMPGSTLVLQCVAVGSPIPH--YQWFKNELPLTHET----------K-----KLYMVPYVDLEHQGTYWCHV 69 (91)
T ss_dssp EECCCCEEECTTSCEEEECEEECSSCCE--EEEEETTEECTTCC----------S-----SEEEESSCCGGGCEEEEEEE
T ss_pred EECCCccEecCCCcEEEEEEeccCCCCE--EEEEcCCeeCCcCC----------C-----CeEEECCCCHHhCEEEEEEE
Confidence 3445567789999999999999887665 99999988763111 1 14999999999999999999
Q ss_pred ccCCe
Q psy13371 170 SNADV 174 (212)
Q Consensus 170 ~n~~~ 174 (212)
.|..+
T Consensus 70 ~n~~g 74 (91)
T 3bfo_A 70 YNDRD 74 (91)
T ss_dssp ECSSC
T ss_pred EcCCC
Confidence 99843
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-11 Score=77.06 Aligned_cols=92 Identities=21% Similarity=0.247 Sum_probs=60.6
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeC---CCCCceEEEEEcCeEEEeeCCCCceeEEe----ecCceEEEEEEEeeeeecC
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYS---PEPPAYIFWYHHDEVISYDSSRGGVSVIT----EKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~---~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d 161 (212)
++..|.+..+.+|+.++|.|.+.+. |.|. |.|+++........+ ....... .......+.|.|.++..+|
T Consensus 10 F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~--V~W~Kgk~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 86 (126)
T 2dav_A 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPT--IKWFKGKWMDLASKA-GKHLQLKETFERHSRVYTFEMQIIKAKDNF 86 (126)
T ss_dssp CCSCCCCCEEETTCCEEEEEEEECCCSSSCCE--EEEEESSSCCHHHHT-TSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred EEEcCCCeEEeCCCCEEEEEEEeccCCCCCCc--EEEeeCcCcccCCCC-CceEEEccccccccccceEEEEEccCCccc
Confidence 4556778889999999999999865 4455 999996421100000 1111111 1112234679999999999
Q ss_pred CEEEEEEcccC---CeeEEEEEEee
Q psy13371 162 SGKYSCSPSNA---DVASVYVHVLN 183 (212)
Q Consensus 162 ~g~y~C~~~n~---~~~~~~~~v~~ 183 (212)
+|.|+|.+.|. ....+.+.|..
T Consensus 87 aG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 87 AGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 99999999997 34455666655
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.5e-11 Score=73.19 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=65.6
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCC------CceeEEeecCceEEEEEEEeeeeecC
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR------GGVSVITEKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d 161 (212)
.....+.+..+.+|+.+.|.|.+.+ .|. +.|+++|.++...... ..+..+..++.. ..|.|.++..+|
T Consensus 10 ~~~~~l~d~~v~eG~~a~f~C~vs~--~p~--v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~--~~L~I~~v~~~D 83 (112)
T 2e6q_A 10 RLVAGLEDVQVYDGEDAVFSLDLST--IIQ--GTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQ--HRLILHAVKHQD 83 (112)
T ss_dssp CEEECCCCEEEETTCEEEEEEEESS--CCC--CEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTE--EEEEEESCCSTT
T ss_pred EEecCCCCeEEcCCCcEEEEEEECC--CCe--EEEEECCEECccCcccccccccccEEEEEeCCcE--EEEEECCCCHHH
Confidence 3455667889999999999999975 455 8999999988533210 014455555532 459999999999
Q ss_pred CEEEEEEcccCCeeEEEEEEee
Q psy13371 162 SGKYSCSPSNADVASVYVHVLN 183 (212)
Q Consensus 162 ~g~y~C~~~n~~~~~~~~~v~~ 183 (212)
+|.|+|...+....++.+.|..
T Consensus 84 ~G~Y~~~~~~~~~ssA~L~V~~ 105 (112)
T 2e6q_A 84 SGALVGFSCPGVQDSAALTIQE 105 (112)
T ss_dssp CSEEEEEEETTEEEEEEEEEEC
T ss_pred CccEEEEEECCeeEEEEEEEeC
Confidence 9999886666666677777754
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.9e-12 Score=79.72 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=55.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.+.+.|+|++. . +.. .+.|+.... +..|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 26 v~l~C~~~g~p~p~i~W~k~g~-~-~~~------~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 92 (118)
T 2eo9_A 26 FVLSCVATGSPVPTILWRKDGV-L-VST------QDSRIKQLE-----NGVLQIRYAKLGDTGRYTCIASTPSGEATWSA 92 (118)
T ss_dssp EEEECBCCCSSCCEEEEEESSS-B-CCT------TSTTEEEEE-----TTEEEEESCCGGGCCCEEEEEECSSCEEEEEC
T ss_pred EEEEEEEEecCCCEEEEEECCE-E-CcC------CCCeEEEcc-----CCEEEEccCCcCCCEEEEEEEEcCCCcEEEEE
Confidence 3689999999999999999773 2 211 134555542 227999999999999999999986 4555667
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|..++
T Consensus 93 ~l~V~~~~ 100 (118)
T 2eo9_A 93 YIEVQEFG 100 (118)
T ss_dssp CEEEECCS
T ss_pred EEEEEeCC
Confidence 77777654
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-11 Score=75.45 Aligned_cols=78 Identities=24% Similarity=0.292 Sum_probs=52.9
Q ss_pred CeeEeeeCCCCC---ceEEEEeeCcceeeeecceeeecCCceEEEee--C--CCCeEEEEEcccCCCCCEEEEEEecCC-
Q psy13371 1 MLHQRKLKGLLP---TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHR--R--EGDEWTLHIKWAQKRDAGVYECQLSTQ- 72 (212)
Q Consensus 1 ~~l~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~- 72 (212)
+.|.|.+.|.|. |.|.|+|++. ...... ...++.+... . ......|+|.+++.+|+|.|+|.+.|.
T Consensus 22 v~L~C~~~g~p~~~~p~v~W~k~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 95 (108)
T 3cx2_A 22 ITFSARVAGASLLKPPVVKWFKGKW-VDLSSK-----VGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKD 95 (108)
T ss_dssp EEEEEEEECC-CCSCCEEEEEETTT-EEGGGG-----CBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred EEEEEEECCCccCCCcEEEEccCCc-cccccc-----CCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEecCC
Confidence 369999999998 9999999652 111100 1234443311 1 113568999999999999999999996
Q ss_pred CceeEEEEEEEe
Q psy13371 73 PVRSFFVNLNVV 84 (212)
Q Consensus 73 ~~~~~~~~l~v~ 84 (212)
+..+..+.|.|.
T Consensus 96 G~~~~~~~L~V~ 107 (108)
T 3cx2_A 96 KFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEEEEE
T ss_pred CceEEEEEEEEe
Confidence 556677777764
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=74.74 Aligned_cols=73 Identities=16% Similarity=0.298 Sum_probs=54.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.|.+.|+|++. .+. .+.++.+. .......|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 24 ~~l~C~~~g~p~p~v~W~~~g~--~~~-------~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 92 (99)
T 3puc_A 24 AKFAVKATGEPRPTAIWTKDGK--AIT-------QGGKYKLS--EDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC 92 (99)
T ss_dssp EEEEEEEEEESCCEEEEEETTE--ECC-------SSSSEEEE--EETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEecCCCEEEEEECCE--ECc-------CCCCEEEE--EeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence 3689999999999999999763 222 23466665 2345668999999999999999999986 4455556
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 93 ~l~V~ 97 (99)
T 3puc_A 93 KLTIK 97 (99)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-10 Score=71.32 Aligned_cols=86 Identities=19% Similarity=0.326 Sum_probs=58.6
Q ss_pred cceeeCCCc-eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 87 TAEILGSPD-LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 87 ~~~~~~~~~-~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
|.....+.+ ..+.+|+.+.|.|.+. .|.|. +.|++++..+... .+.....++.. ..|.|.++..+|+|.|
T Consensus 8 p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~--v~W~k~g~~i~~~----~~~~~~~~~~~--~~L~I~~~~~~D~G~Y 78 (100)
T 2yuv_A 8 AAFAKILDPAYQVDKGGRVRFVVELA-DPKLE--VKWYKNGQEIRPS----TKYIFEHKGCQ--RILFINNCQMTDDSEY 78 (100)
T ss_dssp CCEEECCCSCEEECTTEEEEEEEEES-CTTSC--EEEEESSCBCCCB----TTEEEEEETTE--EEEEEEEECTTTCCEE
T ss_pred CeEEecCCCccEEcCCCcEEEEEEec-CCCce--EEEEECCEECCCC----CCEEEEecCCE--EEEEEcCCCcCcCEEE
Confidence 334444444 5788999999999997 55565 9999999876322 12333333332 3599999999999999
Q ss_pred EEEcccCCeeEEEEEEe
Q psy13371 166 SCSPSNADVASVYVHVL 182 (212)
Q Consensus 166 ~C~~~n~~~~~~~~~v~ 182 (212)
+|.| ........+.|.
T Consensus 79 ~C~a-g~~~~~~~l~V~ 94 (100)
T 2yuv_A 79 YVTA-GDEKCSTELFVR 94 (100)
T ss_dssp EEEE-TTEEEEEEEEEC
T ss_pred EEEE-CCceEEEEEEEe
Confidence 9999 334444555553
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=74.60 Aligned_cols=75 Identities=24% Similarity=0.343 Sum_probs=53.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+... .+..... ...+...|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 23 ~~l~C~~~g~p~p~v~W~~~g~--~~~~~-------~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 92 (100)
T 2kdg_A 23 CRMDFKVSGLPAPDVSWYLNGR--TVQSD-------DLHKMIV-SEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTV 92 (100)
T ss_dssp EEEEEECEEESCCEEEEEETTE--EECCC-------SSSCEEE-ETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEeeCCCEEEEEECCE--ECcCC-------CcEEEEE-cCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEE
Confidence 3689999999999999999773 22211 1111111 2335578999999999999999999986 4556666
Q ss_pred EEEEec
Q psy13371 80 NLNVVV 85 (212)
Q Consensus 80 ~l~v~~ 85 (212)
.|.|..
T Consensus 93 ~l~V~~ 98 (100)
T 2kdg_A 93 QLDVLA 98 (100)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 776653
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=75.70 Aligned_cols=87 Identities=18% Similarity=0.273 Sum_probs=62.0
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
+.....+.+..+.+|+.+.|.|.+.+.+.+ +.|++++..+... .+.....++. ...|.|.++..+|+|.|+
T Consensus 9 p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~---v~W~k~g~~~~~~----~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~ 79 (106)
T 2dlt_A 9 LEVLQDIADLTVKAAEQAVFKCEVSDEKVT---GKWYKNGVEVRPS----KRITISHVGR--FHKLVIDDVRPEDEGDYT 79 (106)
T ss_dssp CCEEECCCCEEEESSCCEECCCEESCSSCE---EEEEESSCBCCCC----SSCEEEEETT--EEEEEESSCCTTTCSCEE
T ss_pred CEEecCCCCeEEeCCCeEEEEEEEcCCCcc---eEEEcCCEECcCC----CCEEEEEeCC--EEEEEECCCCcCCCEEEE
Confidence 344555677889999999999999866432 8999999877322 2223333332 235999999999999999
Q ss_pred EEcccC-CeeEEEEEEe
Q psy13371 167 CSPSNA-DVASVYVHVL 182 (212)
Q Consensus 167 C~~~n~-~~~~~~~~v~ 182 (212)
|.+.|. ......+.|.
T Consensus 80 C~a~n~~~~~~~~l~V~ 96 (106)
T 2dlt_A 80 FVPDGYALSLSAKLNFL 96 (106)
T ss_dssp EEEETSCCCCCBCEEEE
T ss_pred EEEccCCceEEEEEEEE
Confidence 999997 3344455554
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-12 Score=93.03 Aligned_cols=148 Identities=12% Similarity=0.095 Sum_probs=41.9
Q ss_pred CeeEeeeCCC-CC--ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC----C
Q psy13371 1 MLHQRKLKGL-LP--TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ----P 73 (212)
Q Consensus 1 ~~l~C~~~~~-p~--~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~----~ 73 (212)
+.|.|.+.|. |. +.|+|+|++. .+..... . .......|.+...+.+|.+.|+|++.+. +
T Consensus 104 ~~LtC~v~g~~P~~~l~itW~kg~~--~l~~~~~--~----------~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g 169 (291)
T 1mq8_A 104 LTLRCQVEGGAPRANLTVVLLRGEK--ELKREPA--V----------GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQG 169 (291)
T ss_dssp CEEEEEECCCBSTTTEEEEEESSSS--EEEEEEC--C----------BTTEEEEEECCCSSSCSSCEEEEEEEEECGGGT
T ss_pred EEEEEEecCccCCCCcEEEEEECCE--EeecccC--C----------CCCceEEEEeeeeeccCCceEEEEEEecCCccC
Confidence 4689999996 43 3699999883 2221110 0 1112335666666666666999999974 1
Q ss_pred -----ceeEEEEEEEecccce---eeCCCceeeeCCCcEEEEeEEeeCCCC-CceEEEEEcCeEEEeeCCCCceeEEeec
Q psy13371 74 -----VRSFFVNLNVVVPTAE---ILGSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWYHHDEVISYDSSRGGVSVITEK 144 (212)
Q Consensus 74 -----~~~~~~~l~v~~~~~~---~~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 144 (212)
..+....|.|.++|.. +..+ ..+.+|+.+.|.|.+.+.+++ .+.+.|.++++.+.... ..+
T Consensus 170 ~~l~~~~s~~~~L~V~~~P~~~~~~~~p--~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~--------~~~ 239 (291)
T 1mq8_A 170 LELFENTSAPYQLQTFVLPATPPQLVSP--RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV--------TYG 239 (291)
T ss_dssp SCEEEECCCCEECBC-----------------------------------------------------------------
T ss_pred CccccccccceEEEEEecCCCCceecCC--cCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee--------eec
Confidence 1244567777776422 2222 257889999999999987443 45689999998874211 112
Q ss_pred CceEEEEEEEeeee-ecCCEEEEEEcccC
Q psy13371 145 GEVTTSYLLIQQAE-LKDSGKYSCSPSNA 172 (212)
Q Consensus 145 ~~~~~~~l~i~~~~-~~d~g~y~C~~~n~ 172 (212)
+......+.+.... .++.+.|+|.+.+.
T Consensus 240 g~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 268 (291)
T 1mq8_A 240 NDSFSAKASVSVTAEDEGTQRLTCAVILG 268 (291)
T ss_dssp -----------------------------
T ss_pred CCeEEEEEecceeEcCCCCEEEEEEEEeC
Confidence 22111122221112 24467888999875
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-10 Score=72.51 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=59.8
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeec--CceEEEEEEEeeeeecCCE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK--GEVTTSYLLIQQAELKDSG 163 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g 163 (212)
+|.....+....+.+|+.+.|.|.+.+.+.+...+.|++++..+............... .......|.|.++..+|+|
T Consensus 10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 89 (112)
T 3so5_A 10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEG 89 (112)
T ss_dssp SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCE
T ss_pred CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCC
Confidence 44455566677899999999999999776655669999999876211000000000000 0112356999999999999
Q ss_pred EEEEEcccCCe
Q psy13371 164 KYSCSPSNADV 174 (212)
Q Consensus 164 ~y~C~~~n~~~ 174 (212)
.|+|.|.|..+
T Consensus 90 ~Y~C~a~n~~g 100 (112)
T 3so5_A 90 XYQCVISNHFG 100 (112)
T ss_dssp EEEEEEEETTE
T ss_pred eEEEEEEeCCC
Confidence 99999999744
|
| >2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=85.31 Aligned_cols=159 Identities=12% Similarity=0.122 Sum_probs=89.8
Q ss_pred CeeEeeeCCCCCc-eEEEEeeCcce----eeeecc-ee-eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGLLPT-RVSWIRHRDIH----ILTVGS-YT-YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~-~v~W~~~~~~~----~~~~~~-~~-~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.+.... .+.|+|..... +..... .. ....+||.+..+...+..+|+|.+++.+|+|.|.|.+.+..
T Consensus 21 vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~ 100 (211)
T 2ak4_D 21 VTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFY 100 (211)
T ss_dssp EEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEECSB
T ss_pred EEEEEEecCCcCceeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcCCCCEEEEEECccccccCceEEEEEEcCC
Confidence 3689999876444 89999976322 111111 11 02368999987777788999999999999999999987631
Q ss_pred -----ceeEEEEEEEeccc----ceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEee
Q psy13371 74 -----VRSFFVNLNVVVPT----AEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITE 143 (212)
Q Consensus 74 -----~~~~~~~l~v~~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 143 (212)
.......|.|.... +.+..+. ...+.++|.|.+.+. |.| .+.+..... ... ... ...+
T Consensus 101 ~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~----~~~~~vtL~Cl~~gf~P~~--~v~~~~~~~-~~~---t~~--~~~~ 168 (211)
T 2ak4_D 101 NTDKLIFGTGTRLQVFPNIQNPDPAVYQLR----DSKSSDKSVCLFTDFDSQT--NVSQSKDSD-VYI---TDK--CVLD 168 (211)
T ss_dssp TTSCCEECCCEEEEEECCCSSCCCEEEEEB----CCSSSCCEEEEEESCCTTC--CCCCCSSSS-CEE---CCC--EEEE
T ss_pred CcceeeECCCEEEEEeCcCCCCCCEEEEcc----CCCCceEEEEEeeeecCCc--ccccccccc-eEe---cCc--hhcc
Confidence 11123456665321 1111111 112478999999874 444 352111000 000 000 1111
Q ss_pred cCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 144 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.+ ...+. .+......+...|+|.+.+..
T Consensus 169 ~~-~~~S~-t~~~~~w~~g~~~tC~V~~~~ 196 (211)
T 2ak4_D 169 MR-SMDFK-SNSAVAWSNKSDFACANAFNN 196 (211)
T ss_dssp EG-GGTEE-EEEEEEEECSTTCCTTSTTTT
T ss_pred cc-ccccc-cccHHHccCCCceEEEEecCC
Confidence 12 22233 555555567779999887653
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=74.01 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=53.7
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
..+....+.+|+.+.|.|.+.+.| | .+.|++++..+... .+.... . ..|.|.++..+|+|.|+|.|.
T Consensus 14 ~~~~~~~v~~G~~v~l~C~~~g~p-p--~i~W~k~g~~~~~~----~~~~~~-~-----~~L~i~~~~~~D~G~Y~C~a~ 80 (95)
T 2ckn_A 14 VEVESLLVHPGDLLQLRCRLRDDV-Q--SINWLRDGVQLVES----NRTRIT-G-----EEVEVRDSIPADSGLYACVTS 80 (95)
T ss_dssp TBBCCEEECTTSCEEEECCEESSC-C--EEEEEBTTBCCCCC----SSEEEC-S-----SEEEESSCCGGGSEEEEEEEE
T ss_pred cCcceEEEcCCCeEEEEEECCCCC-C--ceEEEECCEecCCC----CCEEEe-C-----CEEEECCCChHHCEEEEEEec
Confidence 345667899999999999999875 5 49999998876321 122222 2 249999999999999999999
Q ss_pred cCC
Q psy13371 171 NAD 173 (212)
Q Consensus 171 n~~ 173 (212)
|..
T Consensus 81 n~~ 83 (95)
T 2ckn_A 81 SPS 83 (95)
T ss_dssp ETT
T ss_pred cCC
Confidence 983
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.6e-10 Score=76.50 Aligned_cols=117 Identities=8% Similarity=0.015 Sum_probs=76.7
Q ss_pred EEEEcccCCCCCEEEEEEecCC-CceeEEEEEEEeccc-ceeeCCCceeeeCCCcEEEEeEEeeCC-CCCceEEEEEcCe
Q psy13371 51 TLHIKWAQKRDAGVYECQLSTQ-PVRSFFVNLNVVVPT-AEILGSPDLHVDEGSTINLTCSIKYSP-EPPAYIFWYHHDE 127 (212)
Q Consensus 51 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~~~~~-~p~~~v~W~~~~~ 127 (212)
.+.|.+++ +|.+.|.|.+... ...+..+.|.|..+| .....+....+.+|+.++|.|.+.+.. .....+.|+++++
T Consensus 53 ~~~ls~vs-~d~~~~~C~~~c~~~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~ 131 (196)
T 3bn3_B 53 ARQLVDIR-EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQ 131 (196)
T ss_dssp EEEEEEEC-SSEECCEEEEEETTEEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTE
T ss_pred EEEEEEEc-cCCCceEEEEECCCCceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCE
Confidence 47888998 8888899998775 456677788887655 333444333588999999999998653 2223479999999
Q ss_pred EEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+........ .......++.+.+.....++...|+|.|.+.
T Consensus 132 ~l~~~~~~~~----~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~ 172 (196)
T 3bn3_B 132 ELIRRSFAGE----PPRARGAVLTATVLARREDHGANFSCRAELD 172 (196)
T ss_dssp EEEEEECTTS----CTTCCCEEEEEEEECCGGGTTCEEEEEEEEE
T ss_pred Eeeccccccc----cccccceeEEEEEeeeeccCCCeEEEEEEcc
Confidence 8854321110 0011112344666555555555999999975
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.5e-11 Score=74.50 Aligned_cols=87 Identities=16% Similarity=0.245 Sum_probs=55.6
Q ss_pred EEEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 80 NLNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 80 ~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.|.|..+|....... .. ......|.|.+.+.|.|. +.|++++..+.... .........+....+.|.|.++..
T Consensus 2 ~L~V~~pP~i~~~~~-~~--~~~~~~l~C~~~g~P~p~--i~W~k~g~~l~~~~--~~~~~~~~~~~~~~~~L~i~~~~~ 74 (118)
T 1wwc_A 2 ALTVYYPPRVVSLEE-PE--LRLEHCIEFVVRGNPPPT--LHWLHNGQPLRESK--IIHVEYYQEGEISEGCLLFNKPTH 74 (118)
T ss_dssp --CCCCCCCCCCCCC-CC--CCCEEEEEEEEECSSCCE--EEEEETTEECCCSS--SEEEEEEECSSEEEEEEEEESCCG
T ss_pred EEEEecCCceeccCC-Ce--eccceEEEEEeeeeCCCe--EEEEECCEECCCCC--ceeEEEeccCccccEEEEECCCCh
Confidence 355556654332221 11 235678999999987776 99999998874321 111122222222345799999999
Q ss_pred cCCEEEEEEcccCC
Q psy13371 160 KDSGKYSCSPSNAD 173 (212)
Q Consensus 160 ~d~g~y~C~~~n~~ 173 (212)
+|+|.|+|.|.|..
T Consensus 75 ~d~G~Y~C~a~N~~ 88 (118)
T 1wwc_A 75 YNNGNYTLIAKNPL 88 (118)
T ss_dssp GGCEEEEEEEEETT
T ss_pred hcCEEEEEEEECCC
Confidence 99999999999983
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=76.04 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=61.5
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
+...+.+..+.+|+.++|.|.+.+.+.+ ..+.|++++..+... .+.....++.. ..|.|.++..+|+|.|+|.
T Consensus 11 ~~~~~~~~~v~~G~~v~l~C~v~~~~~~-~~v~W~k~g~~i~~~----~r~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~ 83 (104)
T 2eny_A 11 ITKRLKTMEVLEGESCSFECVLSHESAS-DPAMWTVGGKTVGSS----SRFQATRQGRK--YILVVREAAPSDAGEVVFS 83 (104)
T ss_dssp CSBCCCCEEEESSCCEEEEEECSSCCCS-SCBCCBSSSSBCSBC----SSCEEEEETTE--EEEEECSCCTTTCSCEEEE
T ss_pred EEecCCCcEEcCCCcEEEEEEEcCCCCC-ceeEEEECCEECCCC----CCEEEEEcCCE--EEEEECCCCHHHCEEEEEE
Confidence 3445667889999999999999876543 238999999877422 22333333332 4599999999999999999
Q ss_pred cccCCeeEEEEEEee
Q psy13371 169 PSNADVASVYVHVLN 183 (212)
Q Consensus 169 ~~n~~~~~~~~~v~~ 183 (212)
+.|. ..+..+.|..
T Consensus 84 a~~~-~~~a~L~V~~ 97 (104)
T 2eny_A 84 VRGL-TSKASLIVRE 97 (104)
T ss_dssp ETTE-EEEECEEEEC
T ss_pred ECCe-eEEEEEEEeC
Confidence 9764 3455555543
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.8e-12 Score=78.62 Aligned_cols=87 Identities=23% Similarity=0.385 Sum_probs=58.0
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCC-ceeEEeecCceEEEEEEEeeeeecCCEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRG-GVSVITEKGEVTTSYLLIQQAELKDSGK 164 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 164 (212)
+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+....... .......++......+.+.++..+|+|.
T Consensus 9 pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~--v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~ 86 (117)
T 2v9t_A 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT--IEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86 (117)
T ss_dssp EEEEEECCCCEEECTTCCEEECCEEEEESCCE--EEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEE
T ss_pred CCeeEcCCCCEEEcCCCcEEEEEECCccCCCe--EEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEE
Confidence 45555566778899999999999999987776 99999998775332111 1122233333111112223557899999
Q ss_pred EEEEcccCCe
Q psy13371 165 YSCSPSNADV 174 (212)
Q Consensus 165 y~C~~~n~~~ 174 (212)
|+|.|.|..+
T Consensus 87 Y~C~a~N~~G 96 (117)
T 2v9t_A 87 YVCVARNYLG 96 (117)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEEeCcc
Confidence 9999999843
|
| >1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4e-11 Score=83.03 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=88.6
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcce----eeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC---
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIH----ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--- 72 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--- 72 (212)
+.|.|.+.+ .....+.|+|..... +...... ....+|+.+..+...+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 17 v~L~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~-~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~ 95 (206)
T 1kgc_D 17 VHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTS-NVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGT 95 (206)
T ss_dssp EEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSS-SEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCCCSTT
T ss_pred EEEEEEEcCCCCCccEEEEEECCCCCcEEEEEECCC-CccCCCEEEEEcCCCCEEEEEECCCCcccCccEEEEEecccCC
Confidence 368999987 445689999976422 1111111 1126899998766778899999999999999999998763
Q ss_pred --C--ceeEEEEEEEeccc----ceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEee
Q psy13371 73 --P--VRSFFVNLNVVVPT----AEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITE 143 (212)
Q Consensus 73 --~--~~~~~~~l~v~~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 143 (212)
. .......|.|...+ +.+..+. ...+.++|.|.+.+. |.| .+ ..+....... ........
T Consensus 96 ~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~----~~~~~v~L~C~~~g~~P~~--~V---~~~~~~~~~~--t~~~~~~~ 164 (206)
T 1kgc_D 96 SYGKLTFGQGTILTVHPNIQNPDPAVYQLR----DSKSSDKSVCLFTDFDSQT--NV---SQSKDSDVYI--TDKTVLDM 164 (206)
T ss_dssp CCCCCCCCCCEEEEEECCCSSCCCEEEECC----CCTTCCCEEEEEESCCTTC--CC---CCCSCTTCEE--CCCEEEEE
T ss_pred CcccceECCCEEEEEeCCCCCCCCeEEeec----CCCCCeEEEEEeeceeccc--cc---ccCCCCceec--cCCceecc
Confidence 1 11123466665421 2221111 112478999999875 444 35 2222110000 01112223
Q ss_pred cCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 144 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++....+ +......+...|+|.+.+.
T Consensus 165 ~gly~~s---~~~~~w~~~~~~tC~v~~~ 190 (206)
T 1kgc_D 165 RSMDFKS---NSAVAWSNKSDFACANAFN 190 (206)
T ss_dssp GGGTEEE---EEEEEEECCSSCCHHHHTT
T ss_pred cCceEee---cCHHHcCCCCceEEEEeeC
Confidence 3332222 3333435556899998765
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.5e-11 Score=71.24 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=57.6
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
...+....+.+|+.+.|.|.+ +.|.+. +.|++++..+... .+.....++. ...|.|.++..+|+|.|+|.+
T Consensus 12 ~~~~~~~~v~~G~~v~l~C~~-~~p~~~--v~W~k~~~~l~~~----~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a 82 (95)
T 2k1m_A 12 SKKPRSVEVAAGSPAVFEAET-ERAGVK--VRWQRGGSDISAS----NKYGLATEGT--RHTLTVREVGPADQGSYAVIA 82 (95)
T ss_dssp SBCCCCEEEETTSCEEEEEEC-SSSSCC--CEEECSSSEECSS----TTCEEEEETT--EEEEEESSCCTTCCSEEEEEE
T ss_pred EeCCCcEEEeCCCcEEEEEEe-CCCCCe--EEEEECCEECCCC----CcEEEEEcCC--EEEEEEcCCCcccCEEEEEEE
Confidence 344567789999999999999 555555 9999999877422 2223333333 245999999999999999999
Q ss_pred ccCCeeEEEEEE
Q psy13371 170 SNADVASVYVHV 181 (212)
Q Consensus 170 ~n~~~~~~~~~v 181 (212)
.+ ....+.+.|
T Consensus 83 g~-~~~~~~l~V 93 (95)
T 2k1m_A 83 GS-SKVKFDLKV 93 (95)
T ss_dssp TT-EEEEEEEEE
T ss_pred CC-ceEEEEEEE
Confidence 43 333344444
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6.8e-12 Score=77.52 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=55.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+. .+.++.+.. ......|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 32 v~L~C~~~g~p~p~v~W~k~g~-~l~--------~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 100 (106)
T 1nct_A 32 ARFSCDTDGEPVPTVTWLRKGQ-VLS--------TSARHQVTT--TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEF 100 (106)
T ss_dssp EECCEEEECSSCCBCCBCSSSS-CCT--------TCSSEEEEE--CSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEE
T ss_pred EEEEEEEEEcCCCEEEEEECCE-ECC--------CCCCEEEEE--CCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEE
Confidence 3689999999999999999773 221 134666552 335679999999999999999999986 4556666
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 101 ~l~V~ 105 (106)
T 1nct_A 101 TLTIQ 105 (106)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66653
|
| >3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.5e-11 Score=82.70 Aligned_cols=123 Identities=16% Similarity=0.119 Sum_probs=81.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC---
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--- 73 (212)
+.|.|.+.+. ...+.|+|..... +....... ...+|+.+..+......+|+|.+++.+|+|.|.|.+....
T Consensus 19 VtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~~~~-~~~~Rfs~~~~~~~~~~sLtI~~lq~~DSG~Y~Ca~~~~~~~~ 96 (229)
T 3mbe_C 19 SGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGT-KENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSGN 96 (229)
T ss_dssp EEEEEEESSC-CSCEEEEEECSSSCBCCCEEESSEE-EEETTEEEEEETTTTEEEEEECSCCSTTCBEEEEEEECSSSTT
T ss_pred EEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeCCCC-ccCCCEEEEECCCCCEEEEEEECCcccCCCCEEEEEEeCCCcc
Confidence 4699999988 6789999965321 11111111 3368999987677788999999999999999999987521
Q ss_pred --ceeEEEEEEEecc---c-ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEE
Q psy13371 74 --VRSFFVNLNVVVP---T-AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130 (212)
Q Consensus 74 --~~~~~~~l~v~~~---~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~ 130 (212)
..-....|.|... + +.+..+ ......++|.|.+.+.. |...+.|.+++..+.
T Consensus 97 ~~~fG~GT~L~V~~~~~~p~P~Vf~~----~~~~~~vtl~Cl~~gf~-P~i~v~~~~~~~~~~ 154 (229)
T 3mbe_C 97 KLIFGTGTLLSVKPNIQNPEPAVYQL----KDPRSQDSTLCLFTDFD-SQINVPKTMESGTFI 154 (229)
T ss_dssp CEEECCCCEEEEECCCSSCCCEEEEE----ECTTCTTCEEEEEESCC-SSSCCCCCCSSSEEE
T ss_pred cceeCCCEEEEEecccCCCCCEEEEc----cCCCCCEEEEEEccccC-CceEeEeeccCceEe
Confidence 1112235666542 1 222111 11223589999999876 477899999887663
|
| >4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ... | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-10 Score=80.59 Aligned_cols=124 Identities=16% Similarity=0.139 Sum_probs=79.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC---
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--- 73 (212)
+.|.|.+.+.....+.|+|..... +...........+||.+..+......+|+|.+++.+|+|.|.|.+....
T Consensus 20 VtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~DsG~Y~Ca~~~~~~~~ 99 (208)
T 4ei6_A 20 ASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYA 99 (208)
T ss_dssp EECEEEECCTTEEEEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTTTTBC-CEECSCCGGGCEEEEEEEEECCSSC
T ss_pred EEEEEEEcCCCCceEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCCCCEEEEEEEeCcccCCCcEEEEEecCCCcc
Confidence 468999998766789999975321 1111111111468999986667788999999999999999999986421
Q ss_pred ---ceeEEEEEEEecc---c-ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEE
Q psy13371 74 ---VRSFFVNLNVVVP---T-AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129 (212)
Q Consensus 74 ---~~~~~~~l~v~~~---~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~ 129 (212)
..-....|.|... + +.+..+. .....++|.|.+.+.++ ...+.|.+++..+
T Consensus 100 ~~~~fG~GT~L~V~~~~~~~~PsVf~l~----~~~~~~tl~Cl~~~f~P-~i~v~~~~~~~~~ 157 (208)
T 4ei6_A 100 QGLTFGLGTRVSVFPYIQNPDPAVYQLR----DSKSSDKSVCLFTDFDS-QTNVSQSKDSDVY 157 (208)
T ss_dssp CCCEECCCEEEEEECCCSSCCCEEEEEE----BSSCTTCEEEEEESCCT-TCCCCCCSSTTCE
T ss_pred ccccCCCCEEEEEeCcccCCCCEEEEcc----cCCCCceEEEEeeccCC-ceEeeecccCcEE
Confidence 1112235666542 1 1111111 11123679999998865 7789999888765
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-11 Score=73.37 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=53.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCC--ceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQ--RFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 78 (212)
+.|.|.+.+ |.+.+.|+|++. .+.. +. |+.+. .......|.|.+++.+|+|.|+|.+.| .+..
T Consensus 25 v~l~C~~~~-~~~~v~W~k~g~--~l~~-------~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~ 89 (103)
T 1x44_A 25 VELECEVSE-DDANVKWFKNGE--EIIP-------GPKSRYRIR--VEGKKHILIIEGATKADAAEYSVMTTG---GQSS 89 (103)
T ss_dssp EEEEEECSS-SSCCCEEEETTE--ECCC-------STTCSEEEE--EETTEEEEEEEEECTTTCSEEEEEETT---EEEE
T ss_pred EEEEEEecC-CCCeEEEEECCE--ECCC-------CCceEEEEE--EcCCEEEEEECCCCcccCEEEEEEECC---CcEE
Confidence 368999988 669999999873 2221 22 55555 233467899999999999999999987 4666
Q ss_pred EEEEEeccc
Q psy13371 79 VNLNVVVPT 87 (212)
Q Consensus 79 ~~l~v~~~~ 87 (212)
+.|.|..++
T Consensus 90 ~~l~V~~~p 98 (103)
T 1x44_A 90 AKLSVDLKS 98 (103)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 777777654
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.8e-11 Score=73.48 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=56.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+. .|.+.+.|+|++. .+.. +.++.+.. ......|.|.+++.+|+|.|+|.+.+ .+..+.
T Consensus 31 v~L~C~~~-~p~~~v~W~k~g~-~~~~--------~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~ 95 (113)
T 2cpc_A 31 VVLTCELC-RPWAEVRWTKDGE-EVVE--------SPALLLQK--EDTVRRLVLPAVQLEDSGEYLCEIDD---ESASFT 95 (113)
T ss_dssp EEEEEEES-CTTCCCEEEETTE-ECCC--------BTTBEEEE--CSSEEEEEESSCCTTTCEEEEEESSS---CEEEEE
T ss_pred EEEEEEec-CCCCeEEEEECCE-ECcc--------CCCEEEEE--CCCEEEEEECCCCcccCEEEEEEEec---CcEEEE
Confidence 36899996 7889999999773 2221 33555542 23456899999999999999999998 566778
Q ss_pred EEEecccceeeC
Q psy13371 81 LNVVVPTAEILG 92 (212)
Q Consensus 81 l~v~~~~~~~~~ 92 (212)
|.|..+|..+..
T Consensus 96 l~V~~~p~~~~~ 107 (113)
T 2cpc_A 96 VTVTEPPVRIIY 107 (113)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEecCCchhcc
Confidence 888877654443
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=73.54 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=51.2
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEee---cCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE---KGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+..+.|.|.+.|.|.|. +.|+++|.++...... ...... .+......|.|.++...|+|.|+|.|.|..
T Consensus 13 ~~~~~~~l~c~v~G~P~P~--I~W~knG~~l~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~ 86 (126)
T 1he7_A 13 VEMHHWCIPFSVDGQPAPS--LRWLFNGSVLNETSFI--FTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 86 (126)
T ss_dssp CCCCEEEEEEEECCSSCCE--EEEEETTEECCCCSSE--EEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETT
T ss_pred ccCccEEEEEEEeeeCCCe--EEEEECCEECCCCCce--eEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECC
Confidence 3567899999999998887 9999999987422110 111111 111223569999999999999999999983
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.24 E-value=7.2e-11 Score=72.02 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=53.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+. .|.+.+.|+|++. .+.. +.++.+. .......|.|.+++.+|+|.|+|.+ +.....+.
T Consensus 26 v~l~C~~~-~p~~~v~W~k~g~-~i~~--------~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a---g~~~~~~~ 90 (100)
T 2yuv_A 26 VRFVVELA-DPKLEVKWYKNGQ-EIRP--------STKYIFE--HKGCQRILFINNCQMTDDSEYYVTA---GDEKCSTE 90 (100)
T ss_dssp EEEEEEES-CTTSCEEEEESSC-BCCC--------BTTEEEE--EETTEEEEEEEEECTTTCCEEEEEE---TTEEEEEE
T ss_pred EEEEEEec-CCCceEEEEECCE-ECCC--------CCCEEEE--ecCCEEEEEEcCCCcCcCEEEEEEE---CCceEEEE
Confidence 36899998 6899999999874 2222 3456554 2334568999999999999999999 33566677
Q ss_pred EEEeccc
Q psy13371 81 LNVVVPT 87 (212)
Q Consensus 81 l~v~~~~ 87 (212)
|.|.++|
T Consensus 91 l~V~~~P 97 (100)
T 2yuv_A 91 LFVRSGP 97 (100)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 7777655
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=75.31 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=48.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.++... ..+..|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 28 v~l~C~~~g~p~p~i~W~~~~~-~~~~--------~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 94 (108)
T 3kvq_A 28 IEVSCTASGNPPPQIMWFKDNE-TLVE--------DSGIVLK----DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEA 94 (108)
T ss_dssp EEEECBCC----CCEEEEESSS-BCCC--------BTTEEEE----TTTTEEEECSCCGGGCEEEEEEEC----CEEEEE
T ss_pred EEEEEECcCcCCCeEEEEECCe-Eccc--------CCCeEEe----CCCcEEEEeecCcccCEEEEEEEEeCCCceEEEE
Confidence 3689999999999999999874 2221 2233332 13357999999999999999999986 5566677
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|..++
T Consensus 95 ~l~V~~~~ 102 (108)
T 3kvq_A 95 FFIIEGAQ 102 (108)
T ss_dssp EEEEEC--
T ss_pred EEEEeCCC
Confidence 77777654
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-11 Score=74.09 Aligned_cols=72 Identities=26% Similarity=0.419 Sum_probs=54.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+ |.+.+.|+|++. .+.. +.++.+.. ......|.|.+++.+|+|.|+|.+.| ....+.
T Consensus 26 v~l~C~~~~-~~~~v~W~k~g~-~~~~--------~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~ 90 (103)
T 2edf_A 26 VELRCELSR-AGTPVHWLKDRK-AIRK--------SQKYDVVC--EGTMAMLVIRGASLKDAGEYTCEVEA---SKSTAS 90 (103)
T ss_dssp EEECCEESS-SSCCCCEEESSC-BCCC--------SSSEEEEE--ETTEEEEEESSCCTTTCSEEEEECSS---CEEEEE
T ss_pred EEEEEEEeC-CCCcEEEEECCE-EccC--------CCCEEEEE--CCCEEEEEECCCCcccCEEEEEEEcc---CCcEEE
Confidence 368999998 788999999773 2221 34565552 23467899999999999999999998 366677
Q ss_pred EEEeccc
Q psy13371 81 LNVVVPT 87 (212)
Q Consensus 81 l~v~~~~ 87 (212)
|.|..++
T Consensus 91 l~V~~~p 97 (103)
T 2edf_A 91 LHVEEKA 97 (103)
T ss_dssp EEECCCS
T ss_pred EEEeCCC
Confidence 7877655
|
| >3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-10 Score=80.49 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=79.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecc-eeeecC-CceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGS-YTYTSD-QRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-- 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~-~~~~~~-~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-- 72 (212)
+.|.|.+.+.....+.|+|..... +..... ..-... +||.+..+......+|+|.+++.+|+|.|.|.+...
T Consensus 27 VtL~C~~s~~~~~~v~WyrQ~pg~~~~~Li~~~~~~~~~~~~~Rfs~s~~~~~~~~sLtI~~lq~~DSG~YyCa~~~~~~ 106 (226)
T 3tjh_C 27 LQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVSAKGT 106 (226)
T ss_dssp EEECCEEEESSCEEEEEEEECTTSCCEEEEEECSSSSEEECGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEESSC
T ss_pred EEEEEEEecCCCCeEEEEEECCCCCcEEEEEecCCCccccccCcEEEEEcCCCCEEEEEEecCCcccCCCEEEEEEecCC
Confidence 468999987666789999975321 111111 111123 899998767778999999999999999999998742
Q ss_pred -Cce--eEEEEEEEecc---c-ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEE
Q psy13371 73 -PVR--SFFVNLNVVVP---T-AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130 (212)
Q Consensus 73 -~~~--~~~~~l~v~~~---~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~ 130 (212)
... -....|.|... + +.+..+. .....++|.|.+.+..+ ...+.|.+++..+.
T Consensus 107 ~~~~~fG~GT~LtV~~~~~~~~P~V~~~~----~~~~~~tl~Cl~~~f~P-~i~v~~~~~~~~~~ 166 (226)
T 3tjh_C 107 GSKLSFGKGAKLTVSPNIQNPDPAVYQLR----DSKSSDKSVCLFTDFDS-QTNVSQSKDSDVYI 166 (226)
T ss_dssp SSSEEECCCEEEEEECCCSSCCCEEEEEE----ECC---CEEEEEESCCT-TCCCCCCSCTTEEE
T ss_pred ccccccCCCeEEEEeCCCCCCCCEEEEcc----cCCCCeEEEEEcccccC-CcEEEeeccCceee
Confidence 111 11235666542 1 2221111 11134789999998764 77899999988774
|
| >3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=98.87 E-value=8.8e-13 Score=89.54 Aligned_cols=124 Identities=14% Similarity=0.128 Sum_probs=76.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeec-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-c
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVG-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-V 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~ 74 (212)
+.|.|.+.+.+.+.+.|+|..... +.... .......+|+.+..+...+..+|+|.+++.+|+|.|.|.+.+.. .
T Consensus 18 vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~ 97 (185)
T 3c6l_A 18 AILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIF 97 (185)
Confidence 468999988766789999976321 11110 11111357888875445567889999999999999999987521 1
Q ss_pred eeEEEEEEEecc----cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEE
Q psy13371 75 RSFFVNLNVVVP----TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVI 129 (212)
Q Consensus 75 ~~~~~~l~v~~~----~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~ 129 (212)
......|.|... ++.+..+. ...+.++|.|.+.+.. |..+|.|.......
T Consensus 98 fg~gT~L~V~~~~~~~~P~V~~~~----~~~~~vtL~C~~~gf~-P~p~v~~~~~~~~~ 151 (185)
T 3c6l_A 98 FGDGTQLVVKPNIQNPEPAVYQLK----DPRSQDSTLCLFTDFD-SQINVPKTMESGTF 151 (185)
Confidence 112234555432 11221111 1122789999998853 44459997666544
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-11 Score=74.00 Aligned_cols=72 Identities=18% Similarity=0.339 Sum_probs=53.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.|.+ +.|+|++. .+.. +.++.+. .......|.|.+++.+|+|.|+|.+.|. ...+.
T Consensus 28 v~l~C~~~~~p~~-v~W~k~g~-~~~~--------~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~n~---~~~~~ 92 (104)
T 2e6p_A 28 VVLTCELSRVDFP-ATWYKDGQ-KVEE--------SELLVVK--MDGRKHRLILPEAKVQDSGEFECRTEGV---SAFFG 92 (104)
T ss_dssp EECCEECSSTTCC-CEEEETTE-ECCC--------BTTBEEE--EETTEEEEEESSCCTTTCEEEEEECSSC---CCCEE
T ss_pred EEEEEEecCCCCc-cEEeeCCE-ECCC--------CCCEEEE--eCCCEEEEEECCCChhhCEEEEEEECCc---eEEEE
Confidence 3689999999988 99999773 2221 2355554 2335678999999999999999999985 33566
Q ss_pred EEEeccc
Q psy13371 81 LNVVVPT 87 (212)
Q Consensus 81 l~v~~~~ 87 (212)
|.|.++|
T Consensus 93 l~V~~~P 99 (104)
T 2e6p_A 93 VTVQDPS 99 (104)
T ss_dssp EEEECCC
T ss_pred EEEcCCC
Confidence 7776654
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=75.51 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=54.1
Q ss_pred eeEeeeCCCCC-ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 2 LHQRKLKGLLP-TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
.|.|.+.+.|. +.+.|+|++. .+.. ++|+.+.. ....++|.|.+++.+|+|.|+|.+.+ ....+.
T Consensus 27 ~l~C~v~~~~~~~~v~W~k~g~-~i~~--------~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~~---~~~~a~ 92 (104)
T 2eny_A 27 SFECVLSHESASDPAMWTVGGK-TVGS--------SSRFQATR--QGRKYILVVREAAPSDAGEVVFSVRG---LTSKAS 92 (104)
T ss_dssp EEEEECSSCCCSSCBCCBSSSS-BCSB--------CSSCEEEE--ETTEEEEEECSCCTTTCSCEEEEETT---EEEEEC
T ss_pred EEEEEEcCCCCCceeEEEECCE-ECCC--------CCCEEEEE--cCCEEEEEECCCCHHHCEEEEEEECC---eeEEEE
Confidence 68999999875 4899999874 2222 34666652 34567899999999999999999876 456677
Q ss_pred EEEeccc
Q psy13371 81 LNVVVPT 87 (212)
Q Consensus 81 l~v~~~~ 87 (212)
|.|..+|
T Consensus 93 L~V~~~p 99 (104)
T 2eny_A 93 LIVRERS 99 (104)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 8887765
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=75.93 Aligned_cols=77 Identities=26% Similarity=0.381 Sum_probs=55.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.+.+.|+|++. .+.. +.+..... ...+...|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 27 v~l~C~~~g~p~p~v~W~~~g~-~~~~--------~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 96 (110)
T 2dm3_A 27 CRMDCKVSGLPTPDLSWQLDGK-PVRP--------DSAHKMLV-RENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSL 96 (110)
T ss_dssp BCCEEEEECSSCCEEECBBSSS-BCCC--------CSSEEEEE-CTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECC
T ss_pred EEEEEEEEEcCCCEEEEEECCE-ECCC--------CCceEEEE-ecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEE
Confidence 4689999999999999999773 2221 11222221 2344678999999999999999999986 4556667
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|..++
T Consensus 97 ~l~V~~~p 104 (110)
T 2dm3_A 97 ELVVAAKE 104 (110)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 77777654
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-11 Score=74.74 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=58.8
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeC---CCCCceEEEEEcCeEEEeeCCCCceeEEe----ecCceEEEEEEEeeeeecC
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYS---PEPPAYIFWYHHDEVISYDSSRGGVSVIT----EKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~---~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d 161 (212)
++..|.+..+.+|+.+.|.|.+.+. |.|. |.|+++......... ....... .......+.|.|.++..+|
T Consensus 15 f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~--V~W~Kgk~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 91 (118)
T 2edn_A 15 FLKKPDSVSVETGKDAVVVAKVNGKELPDKPT--IKWFKGKWLELGSKS-GARFSFKESHNSASNVYTVELHIGKVVLGD 91 (118)
T ss_dssp CSBCCCCCEEETTSCEECCEEEETTTSSSCCC--CEEEETTTCCCCCST-TSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred EEECCCCeEEeCCCCEEEEEEEeccCCCCCCc--EEEeeCCEeccCCCC-ccEEEeccccccccccceEEEEEeeCChhh
Confidence 4455778889999999999999875 4555 999997421100111 1111111 1112234679999999999
Q ss_pred CEEEEEEcccCC---eeEEEEEE
Q psy13371 162 SGKYSCSPSNAD---VASVYVHV 181 (212)
Q Consensus 162 ~g~y~C~~~n~~---~~~~~~~v 181 (212)
+|.|+|.+.|.. ...+.|.|
T Consensus 92 ~G~Y~Cevsn~~g~~s~~~~L~V 114 (118)
T 2edn_A 92 RGYYRLEVKAKDTCDSCGFNIDV 114 (118)
T ss_dssp CSCEEEEEECSSCEEEEEECCEE
T ss_pred CEEEEEEEEEcCCcEEEEEEEEE
Confidence 999999999983 33444444
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=77.01 Aligned_cols=94 Identities=24% Similarity=0.338 Sum_probs=64.2
Q ss_pred EEEEeccc-ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEe-ecCceEEEEEEEeee
Q psy13371 80 NLNVVVPT-AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT-EKGEVTTSYLLIQQA 157 (212)
Q Consensus 80 ~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~ 157 (212)
.|.|..++ .....+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+.... +.... .++.. ..|.|.++
T Consensus 6 ~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~--v~W~k~g~~l~~~~----~~~~~~~~~~~--~~L~I~~v 77 (115)
T 2cr6_A 6 SGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEP--VHWFLDKTPLHANE----LNEIDAQPGGY--HVLTLRQL 77 (115)
T ss_dssp CCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCS--CEEEESSCEECCSS----SCCBCCBTTTB--CCBEECSC
T ss_pred EEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCc--cEEEECCEECCCCC----cEEEEEcCCCE--EEEEEcCC
Confidence 34555554 344556778899999999999999887777 99999998874322 11111 11211 24999999
Q ss_pred eecCCEEEEEEcccCCeeEEEEEEe
Q psy13371 158 ELKDSGKYSCSPSNADVASVYVHVL 182 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~~~~~~~~~v~ 182 (212)
..+|+|.|+|.+.+. ...+.+.|.
T Consensus 78 ~~~D~G~Y~C~~g~~-~~~~~L~V~ 101 (115)
T 2cr6_A 78 ALKDSGTIYFEAGDQ-RASAALRVT 101 (115)
T ss_dssp CTTTCEEEEEEETTE-ECCEEEEEE
T ss_pred ChhhCEEEEEEECCe-eEEEEEEEE
Confidence 999999999995433 333555554
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.1e-11 Score=75.45 Aligned_cols=77 Identities=13% Similarity=0.118 Sum_probs=52.7
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeC--CCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR--EGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
.|.|.+.|.|.|.+.|+|++. .+.. +.++...... ......|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 24 ~l~C~~~g~P~p~i~W~k~g~--~l~~-------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~ 94 (118)
T 1wwc_A 24 CIEFVVRGNPPPTLHWLHNGQ--PLRE-------SKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQT 94 (118)
T ss_dssp EEEEEEECSSCCEEEEEETTE--ECCC-------SSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEEEeeeeCCCeEEEEECCE--ECCC-------CCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeE
Confidence 478999999999999999873 2221 1222222111 113568999999999999999999996 445555
Q ss_pred EEEEEeccc
Q psy13371 79 VNLNVVVPT 87 (212)
Q Consensus 79 ~~l~v~~~~ 87 (212)
+.|.|...|
T Consensus 95 ~~l~v~~~P 103 (118)
T 1wwc_A 95 INGHFLKEP 103 (118)
T ss_dssp EEECCSCCC
T ss_pred EEEEEccCC
Confidence 666555444
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=71.21 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=55.3
Q ss_pred ceeeCCCc-eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 88 AEILGSPD-LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 88 ~~~~~~~~-~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
.++..+.+ ..+.+|+.+.|.|.+ +.|.+. +.|++++..+.... .+.....++. ...|.|.++..+|+|.|+
T Consensus 17 ~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~--v~W~k~g~~l~~~~---~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~ 88 (104)
T 1pd6_A 17 AFQKKLEPAYQVSKGHKIRLTVEL-ADHDAE--VKWLKNGQEIQMSG---SKYIFESIGA--KRTLTISQCSLADDAAYQ 88 (104)
T ss_dssp SCSEECCSEEEEETTSCEEEEEEC-SSSSSC--CEEEESSSEECCCS---SSSEEEEETT--EEEEEECSCSSSSCEEEE
T ss_pred EEEEcCCCcEEEecCCCEEEEEEE-cCCCCE--EEEEECCEECCCCC---CeEEEEecCC--EEEEEECCCCcccCEEEE
Confidence 33444444 679999999999999 566565 99999998874321 2233333333 235999999999999999
Q ss_pred EEcccC
Q psy13371 167 CSPSNA 172 (212)
Q Consensus 167 C~~~n~ 172 (212)
|.+.+.
T Consensus 89 C~a~~~ 94 (104)
T 1pd6_A 89 CVVGGE 94 (104)
T ss_dssp EEETTE
T ss_pred EEECCC
Confidence 999654
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.21 E-value=8e-10 Score=77.94 Aligned_cols=134 Identities=15% Similarity=0.228 Sum_probs=87.3
Q ss_pred CeeEeeeCCC-C---CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cce
Q psy13371 1 MLHQRKLKGL-L---PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVR 75 (212)
Q Consensus 1 ~~l~C~~~~~-p---~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 75 (212)
+.|.|.+.+. | ...+.|+|++. ... .....|++..+...|+|.|.|.+.+. +..
T Consensus 20 VTLTatVaGGkP~pspyTYqWyKDG~--~Is-------------------GaT~tLti~s~t~sdSG~YqCvVTDa~Gcs 78 (304)
T 3shs_A 20 FTLTATVAGDEPLPSNLTYTWTKDDQ--PHE-------------------NNTATLTVADATSENAGSYKVTVQDTDTMT 78 (304)
T ss_dssp EEEEEEEEESSSCCCCEEEEEEETTE--ECS-------------------CCSSEEEESSCCGGGCEEEEEEEEETTTCC
T ss_pred EEEEEEecCCCCCCCCceEEEEECCc--ccc-------------------CCcceEEeeeccccCCeEEEEEEEECCCCe
Confidence 3689998754 6 45899999872 211 12227889999999999999999874 322
Q ss_pred eEEEEEEEeccc--ce-eeCCCceeeeCCCcEEEEeEE--eeCCCC----CceEEEEEcCeEEEeeCCCCceeEEeecCc
Q psy13371 76 SFFVNLNVVVPT--AE-ILGSPDLHVDEGSTINLTCSI--KYSPEP----PAYIFWYHHDEVISYDSSRGGVSVITEKGE 146 (212)
Q Consensus 76 ~~~~~l~v~~~~--~~-~~~~~~~~~~~g~~~~l~C~~--~~~~~p----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 146 (212)
.....+.|.... .. +..|....+..+..+.|.+.+ .+...| ...+.|++++..+.. ..
T Consensus 79 ~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg--Aq----------- 145 (304)
T 3shs_A 79 SVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT--TQ----------- 145 (304)
T ss_dssp EEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES--SS-----------
T ss_pred eeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC--cc-----------
Confidence 222222333322 11 223445556677888898877 433222 446999999986621 10
Q ss_pred eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 147 VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.+......++|.|+|.++|.
T Consensus 146 ----~lT~sS~TateaG~YtV~VTn~ 167 (304)
T 3shs_A 146 ----DITIQEFTADKNGVYTVKVWGE 167 (304)
T ss_dssp ----EEEECSCCGGGCEEEEEEEESS
T ss_pred ----ccceeeEEecCCeEEEEEEEcC
Confidence 2677777888999999999986
|
| >1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D | Back alignment and structure |
|---|
Probab=99.20 E-value=8.7e-11 Score=81.78 Aligned_cols=157 Identities=14% Similarity=0.133 Sum_probs=87.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeec-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-c
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVG-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-V 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~ 74 (212)
+.|.|.+. .....+.|+|..... +.... .......+|+++..+...+..+|+|.+++.+|+|.|.|.+.... .
T Consensus 19 vtL~C~~~-~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~ 97 (215)
T 1oga_D 19 LTVYCNSS-SVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGN 97 (215)
T ss_dssp EEEEEECS-SCCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECTTSS
T ss_pred EEEEEEEc-CCCceEEEEEeCCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEeccccc
Confidence 36899994 345789999976421 12111 11112358999987667788999999999999999999987531 1
Q ss_pred --eeEEEEEEEeccc----ceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeecCce
Q psy13371 75 --RSFFVNLNVVVPT----AEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV 147 (212)
Q Consensus 75 --~~~~~~l~v~~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (212)
......|.|.... +.+..+ ...++.++|.|.+.+. |.|. + .++....... ........++..
T Consensus 98 ~~fg~gt~L~V~~~~~~~~P~V~~~----~~~~~~vtL~C~~~gf~P~p~--v---~~~~~~~~~~--t~~~~~~~~gl~ 166 (215)
T 1oga_D 98 LIFGKGTKLSVKPNIQNPDPAVYQL----RDSKSSDKSVCLFTDFDSQTN--V---SQSKDSDVYI--TDKTVLDMRSMD 166 (215)
T ss_dssp EEECCCEEEEEECCCSSCCCEEEEE----EBSSSSSCEEEEEESCCTTCC--C---CCCSSTTEEE--CCCEEEEEGGGT
T ss_pred ceeCCCEEEEEeccCCCcCCEEEEc----CCCCCCeEEEEEccccccCcc--c---ccCCCCceEe--ccCcccCCCccE
Confidence 1123456665321 111110 1123478999999874 4443 5 2221110000 011122333433
Q ss_pred EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 148 TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 148 ~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+ +......+.+.|+|.+...
T Consensus 167 ~~s---~~~~~w~~~~~~tC~v~~~ 188 (215)
T 1oga_D 167 FKS---NSAVAWSNKSDFACANAFN 188 (215)
T ss_dssp EEE---EEEEEEESCSSCCTTTTTT
T ss_pred EEe---cchhhcCCCCceEEEEEcC
Confidence 222 2233334556899998655
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-11 Score=74.02 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=51.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.| +.+.|+|++. .+...... ..|+.+. .......|.|.+++.+|+|.|+|.+.+ ....+.
T Consensus 26 v~l~C~~~~~~-~~v~W~k~g~-~i~~~~~~----~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~~~ 94 (101)
T 2edk_A 26 VEMAVEVSEEG-AQVMWMKNGV-ELTREDSF----KARYRFK--KDGKRHILIFSDVVQEDRGRYQVITNG---GQCEAE 94 (101)
T ss_dssp CBCCEEESCSS-CCCEEEESSC-BCCCSCCS----SCCCEEE--ECSSEEEEECSSCCGGGCSBEEEECSS---CEECCB
T ss_pred EEEEEEEeCCC-CEEEEEECCE-ECCCCCCc----ceeEEEE--ECCCEEEEEECCCChhhCEEEEEEEcC---CcEEEE
Confidence 46899999999 9999999874 22211100 0155554 334567899999999999999999987 334445
Q ss_pred EEEecc
Q psy13371 81 LNVVVP 86 (212)
Q Consensus 81 l~v~~~ 86 (212)
|.|..+
T Consensus 95 l~V~~~ 100 (101)
T 2edk_A 95 LIVEEK 100 (101)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 666543
|
| >3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-11 Score=82.19 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=81.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCce
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR 75 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 75 (212)
+.|.|.+.+.....+.|+|..... +..... ......+|+.+..+......+|+|.+++.+|+|.|.|.+......
T Consensus 18 vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~~~ 97 (199)
T 3gsn_A 18 TNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQF 97 (199)
T ss_dssp CEEEEECCCTTCCCEEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCCGGGCEEEEEEEESSSCE
T ss_pred EEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCcccCCccEEEEEcccccc
Confidence 579999998766789999975321 111111 011124788887656678899999999999999999998653211
Q ss_pred --eEEEEEEEecc----cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEE
Q psy13371 76 --SFFVNLNVVVP----TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVIS 130 (212)
Q Consensus 76 --~~~~~l~v~~~----~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~ 130 (212)
-....|.|... .+.+..+... ...++|.|.+.+..+ ...+.|.+++..+.
T Consensus 98 ~fG~GT~L~V~~~~~~~~P~V~~~~~~----~~~~tl~Cl~~gf~P-~i~~~~~~~~~~~~ 153 (199)
T 3gsn_A 98 YFGTGTSLTVIPNIQNPDPAVYQLRDS----KSSDKSVCLFTDFDS-QTNVSQSKDSDAYI 153 (199)
T ss_dssp EECSCEEEEEECCCSSCCCEEEECCCS----SSSSSCCEEEETCCT-TCCSSCSSCSSEEE
T ss_pred cCCCCEEEEEecccCCCCCEEEEcccC----CCCceEEEEeecccC-CeEeEeccCCCeEe
Confidence 12235666542 1222222211 123679999998765 77889999888774
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=74.85 Aligned_cols=67 Identities=24% Similarity=0.539 Sum_probs=53.0
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....|....+.+|+.+.|.|.+.+.|.|. +.|++++..+.... . ..|.|.++..+|+|.|+|.
T Consensus 13 i~~~p~~~~v~~G~~v~l~C~~~g~p~~~--v~W~k~~~~~~~~~----------~-----~~L~i~~v~~~d~G~Y~C~ 75 (96)
T 2ens_A 13 LVVEPEGGAVAPGGTVTLTCEVPAQPSPQ--IHWMKDGVPLPLPP----------S-----PVLILPEIGPQDQGTYSCV 75 (96)
T ss_dssp CEEESTTSEECTTCEEEEECCCSSCSSCC--CCCEESSSBCSSCC----------C-----SEEEEESCCTTTCEEEECE
T ss_pred EEECCCCCEEcCCCeEEEEEEEccCCCCE--EEEEECCEECcCCC----------C-----CEEEECCCCcccCEEEEEE
Confidence 34445567789999999999998877666 99999987663211 1 2499999999999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
+.|.
T Consensus 76 a~n~ 79 (96)
T 2ens_A 76 ATHS 79 (96)
T ss_dssp ECCS
T ss_pred EEeC
Confidence 9995
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-10 Score=69.52 Aligned_cols=89 Identities=20% Similarity=0.249 Sum_probs=61.0
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.+...+....+.+|+.+.|.|.. +.|.|. +.|++++..+.. ..+.....++.. ..|.|.++..+|+|.|+|
T Consensus 10 ~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~--v~W~k~~~~l~~----~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C 80 (103)
T 2dku_A 10 CFTEELTNLQVEEKGTAVFTCKT-EHPAAT--VTWRKGLLELRA----SGKHQPSQEGLT--LRLTISALEKADSDTYTC 80 (103)
T ss_dssp CCSSCCCCEEEETTSEEEEEEEC-SSCCSC--CEEEESSCBCCS----SSSEEEEEETTE--EEEEEESCCTTTCSEEEE
T ss_pred EeEecCCcEEEeCCCcEEEEEEe-CCCCCe--EEEEeCCEECCC----CCeEEEEeCCCE--EEEEECCCCcccCEEEEE
Confidence 34445667789999999999994 666665 999999987632 223333333322 359999999999999999
Q ss_pred EcccCCeeEEEEEEeeccc
Q psy13371 168 SPSNADVASVYVHVLNGEY 186 (212)
Q Consensus 168 ~~~n~~~~~~~~~v~~~~~ 186 (212)
.+. .....+.+.|.....
T Consensus 81 ~~g-~~~~~~~l~V~~~p~ 98 (103)
T 2dku_A 81 DIG-QAQSRAQLLVQGRRS 98 (103)
T ss_dssp ECS-SCBCCEEEEEECSCC
T ss_pred EeC-CceEEEEEEEeCccC
Confidence 933 344456666654433
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=70.48 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=50.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+ +.|.+.+.|+|++. .+. .+.++.+.. ......|+|.+++.+|+|.|+|.+.+ ....+.
T Consensus 26 v~l~C~~-~~p~~~v~W~k~~~-~l~--------~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~ag~---~~~~~~ 90 (95)
T 2k1m_A 26 AVFEAET-ERAGVKVRWQRGGS-DIS--------ASNKYGLAT--EGTRHTLTVREVGPADQGSYAVIAGS---SKVKFD 90 (95)
T ss_dssp EEEEEEC-SSSSCCCEEECSSS-EEC--------SSTTCEEEE--ETTEEEEEESSCCTTCCSEEEEEETT---EEEEEE
T ss_pred EEEEEEe-CCCCCeEEEEECCE-ECC--------CCCcEEEEE--cCCEEEEEEcCCCcccCEEEEEEECC---ceEEEE
Confidence 3689999 78889999999773 222 134666552 33467899999999999999999943 444566
Q ss_pred EEEe
Q psy13371 81 LNVV 84 (212)
Q Consensus 81 l~v~ 84 (212)
|.|.
T Consensus 91 l~V~ 94 (95)
T 2k1m_A 91 LKVI 94 (95)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-11 Score=77.07 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=59.5
Q ss_pred cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCC---C---CceeE-EeecCceEEEEEEEeee
Q psy13371 85 VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSS---R---GGVSV-ITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~l~i~~~ 157 (212)
.+|.....+....+.+|+.+.|.|.+.+.|.|. +.|++++..+..... . ..+.. .........+.|.|.++
T Consensus 20 ~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~--i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v 97 (137)
T 3qr2_A 20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPE--IQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL 97 (137)
T ss_dssp -CCEEEECCCCEEEETTSCEEEEEEEECSSCCE--EEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred CCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCe--EEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence 466667777888999999999999999887776 999997764311000 0 00111 11111123356999999
Q ss_pred eecCCEEEEEEcccC
Q psy13371 158 ELKDSGKYSCSPSNA 172 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~ 172 (212)
..+|+|.|+|.|.|.
T Consensus 98 ~~~D~G~Y~C~a~N~ 112 (137)
T 3qr2_A 98 VEEDTGTYECRASND 112 (137)
T ss_dssp CGGGCEEEEEEEECC
T ss_pred CcccCEEEEEEEEec
Confidence 999999999999997
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-11 Score=74.24 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=49.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.|.+.|+|++. .+.. . +.. ...+...|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 29 v~l~C~~~g~p~p~v~W~~~g~-~~~~-~--------~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~ 94 (99)
T 2yr3_A 29 FVLQCSVRGTPVPRITWLLNGQ-PIQY-A--------RST----CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSA 94 (99)
T ss_dssp EEEECEEEEESCCCCEEEESSS-BCSS-C--------CCE----EETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEEC
T ss_pred EEEEEEEeeeCCCeEEEEECCE-ECcc-c--------ceE----eeCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEE
Confidence 3689999999999999999773 2211 1 111 1224678999999999999999999986 4444444
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 95 ~l~V 98 (99)
T 2yr3_A 95 WVTV 98 (99)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 4444
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-10 Score=69.45 Aligned_cols=68 Identities=24% Similarity=0.419 Sum_probs=49.9
Q ss_pred CCceeeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 93 SPDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
+....+.+|+.+.|.|.+.+ .|.+. +.|++++.... ... .....+ .|.|.++..+|+|.|+|.+.|
T Consensus 17 ~~~~~v~~G~~v~l~C~~~~~~p~~~--v~W~k~~~~~~----~~~--~~~~~~-----~L~i~~v~~~D~G~Y~C~a~n 83 (98)
T 1gl4_B 17 QRSQSVRPGADVTFICTAKSKSPAYT--LVWTRLHNGKL----PSR--AMDFNG-----ILTIRNVQPSDAGTYVCTGSN 83 (98)
T ss_dssp CCEEEECTTCCEEEEEEEEESSSCCE--EEEEEGGGBCC----CTT--EEEETT-----EEEECSCCGGGCEEEEEEEEC
T ss_pred CCCeEEecCCCEEEEEeCCCCCCCcE--EEEEeCCCCCC----Cce--eecCCC-----EEEEeCCChhhCEEEEEEecC
Confidence 45568899999999999984 55444 99999754321 111 122222 499999999999999999999
Q ss_pred CC
Q psy13371 172 AD 173 (212)
Q Consensus 172 ~~ 173 (212)
..
T Consensus 84 ~~ 85 (98)
T 1gl4_B 84 MF 85 (98)
T ss_dssp SS
T ss_pred CC
Confidence 83
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=71.47 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=53.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+. |.+.|+|++. .+. .+.|+.+.. ......|.|.+++.+|+|.|+|.+ +.....+.
T Consensus 37 v~l~C~~~~~--p~v~W~k~~~-~l~--------~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a---~~~~~~~~ 100 (113)
T 2edh_A 37 AVLRCELSKM--APVEWWKGHE-TLR--------DGDRHSLRQ--DGARCELQIRGLVAEDAGEYLCMC---GKERTSAM 100 (113)
T ss_dssp EEEEEEESSC--CCCEEEESSS-BCC--------CSSSEEEEE--ETTEEEEEECSCCSTTCEEEEEEE---TTEEEEEE
T ss_pred EEEEEEECCC--CcEEEEECCE-ECC--------CCCcEEEEE--CCCEEEEEECCCChhhCEEEEEEe---CCCCEEEE
Confidence 3689999875 7899999774 222 135666653 334668999999999999999999 33566677
Q ss_pred EEEecccc
Q psy13371 81 LNVVVPTA 88 (212)
Q Consensus 81 l~v~~~~~ 88 (212)
|.|..+|.
T Consensus 101 l~V~~~p~ 108 (113)
T 2edh_A 101 LTVRAMPS 108 (113)
T ss_dssp EEECCCCC
T ss_pred EEEeCCCC
Confidence 88876653
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=72.67 Aligned_cols=89 Identities=13% Similarity=0.098 Sum_probs=53.9
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeeecceeeecCCceEEEeeC-CCCeEEEEEcccCCCCCEEEEEEecCC-Ccee
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR-EGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRS 76 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~ 76 (212)
+.|.|.+.|. |.+.+.|++++.. ... .... ...+....... ......|.|.+++.+|+|.|+|.+.|. +...
T Consensus 26 v~L~C~~~g~p~~~~~i~W~~~~~~-~~~-~~~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 101 (122)
T 3s35_X 26 LVLNCTARTELNVGIDFNWEYPSSK-HQH-KKLV--NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 101 (122)
T ss_dssp EEEEEEEEECTTCCCEEEEECSCTT-CCH-HHHB--CCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred EEEEEEEEcCCCCcEEEEEECCCcc-cCC-ceee--eeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCCceE
Confidence 3689999984 4578999997742 110 0000 00011111000 113457999999999999999999986 4566
Q ss_pred EEEEEEEecccceeeCC
Q psy13371 77 FFVNLNVVVPTAEILGS 93 (212)
Q Consensus 77 ~~~~l~v~~~~~~~~~~ 93 (212)
..+.|.|.++|.....+
T Consensus 102 ~~~~l~V~~~p~i~~~p 118 (122)
T 3s35_X 102 NSTFVRVHEKPFVAFGS 118 (122)
T ss_dssp EEEEEEEEEEECC----
T ss_pred EEEEEEEeccCeEEeec
Confidence 77888888766544433
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-11 Score=75.97 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=54.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.|.|.+.|+|++. .+.. +.++.+.. ...+...|+|.+++.+|+|.|+|.+.+ ....+.
T Consensus 31 v~l~C~~~g~p~p~v~W~k~g~-~l~~--------~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~~g~---~~~~~~ 97 (115)
T 2cr6_A 31 ATFRCRISPANYEPVHWFLDKT-PLHA--------NELNEIDA-QPGGYHVLTLRQLALKDSGTIYFEAGD---QRASAA 97 (115)
T ss_dssp EECCCEEESTTCCSCEEEESSC-EECC--------SSSCCBCC-BTTTBCCBEECSCCTTTCEEEEEEETT---EECCEE
T ss_pred EEEEEEEcCCCCCccEEEECCE-ECCC--------CCcEEEEE-cCCCEEEEEEcCCChhhCEEEEEEECC---eeEEEE
Confidence 3689999999999999999873 2222 23333321 123456899999999999999999533 455677
Q ss_pred EEEeccccee
Q psy13371 81 LNVVVPTAEI 90 (212)
Q Consensus 81 l~v~~~~~~~ 90 (212)
|.|..+|...
T Consensus 98 L~V~~~p~~~ 107 (115)
T 2cr6_A 98 LRVTEKPSVF 107 (115)
T ss_dssp EEEECCSSCC
T ss_pred EEEECCCcee
Confidence 8888766543
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.7e-11 Score=73.67 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=52.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.|.+ +.|+|++. .+.. +.|+.+.. ......|.|.+++.+|+|.|+|.+.|. ..+..+.
T Consensus 26 v~l~C~~~~~~~~-v~W~k~g~-~~~~--------~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~-~~~~~~~ 92 (106)
T 2dlt_A 26 AVFKCEVSDEKVT-GKWYKNGV-EVRP--------SKRITISH--VGRFHKLVIDDVRPEDEGDYTFVPDGY-ALSLSAK 92 (106)
T ss_dssp EECCCEESCSSCE-EEEEESSC-BCCC--------CSSCEEEE--ETTEEEEEESSCCTTTCSCEEEEEETS-CCCCCBC
T ss_pred EEEEEEEcCCCcc-eEEEcCCE-ECcC--------CCCEEEEE--eCCEEEEEECCCCcCCCEEEEEEEccC-CceEEEE
Confidence 3689999999888 99999874 2221 34555542 334578999999999999999999986 3444555
Q ss_pred EEEe
Q psy13371 81 LNVV 84 (212)
Q Consensus 81 l~v~ 84 (212)
|.|.
T Consensus 93 l~V~ 96 (106)
T 2dlt_A 93 LNFL 96 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A | Back alignment and structure |
|---|
Probab=99.16 E-value=9.5e-11 Score=71.85 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=52.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.|.+ +.|+|++. .+. .+.++.+. .......|.|.+++.+|+|.|+|.+.+ ....+.
T Consensus 26 v~l~C~~~~~p~~-v~W~k~~~-~l~--------~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~~g~---~~~~~~ 90 (103)
T 2e7b_A 26 ATLRCVLSSVAAP-VKWCYGNN-VLR--------PGDKYSLR--QEGAMLELVVRNLRPQDSGRYSCSFGD---QTTSAT 90 (103)
T ss_dssp EEEEEECSSCCCS-CEEEESSS-BCC--------CSSSEEEE--ECSSEEEEEECSCCTTTCCCEEEECSS---CBCCBC
T ss_pred EEEEEEEeCCCCC-eEEEECCE-ECC--------CCCcEEEE--EcCCEEEEEEccCCcccCEEEEEEECC---cEEEEE
Confidence 3689999999988 99999773 222 13466665 344567899999999999999998433 344566
Q ss_pred EEEeccc
Q psy13371 81 LNVVVPT 87 (212)
Q Consensus 81 l~v~~~~ 87 (212)
|.|..+|
T Consensus 91 l~V~~~p 97 (103)
T 2e7b_A 91 LTVTALP 97 (103)
T ss_dssp EEEECCC
T ss_pred EEEEecc
Confidence 7776655
|
| >1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.6e-10 Score=69.98 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=59.7
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcce----eeeec-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIH----ILTVG-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP- 73 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~----~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~- 73 (212)
+.|.|.+.+.. ...+.|+|..... +.... ......++|+.+..+...+..+|+|.+++.+|+|.|.|.+.+.+
T Consensus 19 v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~v~~~~~ 98 (113)
T 1zox_A 19 LTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGL 98 (113)
T ss_dssp EEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCSSS
T ss_pred EEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCEEEEEeeEcCCC
Confidence 36899998754 3469999976421 11111 11112357999886567778999999999999999999998864
Q ss_pred ceeEEEEEEEecc
Q psy13371 74 VRSFFVNLNVVVP 86 (212)
Q Consensus 74 ~~~~~~~l~v~~~ 86 (212)
.....+.|.|..+
T Consensus 99 ~~~~~v~L~V~~~ 111 (113)
T 1zox_A 99 DPMFKVTVNIGPV 111 (113)
T ss_dssp CCEEEEEEEEECC
T ss_pred CccEEEEEEEEcC
Confidence 3456667777543
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.8e-10 Score=77.14 Aligned_cols=79 Identities=23% Similarity=0.462 Sum_probs=58.9
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
+.+..+....+.+|+.+.|.|.+.+.|.|. +.|++++..+..... .+......+. .+.|.|.++..+|.|.|+|
T Consensus 20 P~~~~p~~~~~~~G~~v~l~C~~~g~p~p~--i~W~~~g~~l~~~~~--~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C 93 (215)
T 3mtr_A 20 PKLQGPVAVYTWEGNQVNITCEVFAYPSAT--ISWFRDGQLLPSSNY--SNIKIYNTPS--ASYLEVTPDSENDFGNYNC 93 (215)
T ss_dssp EEEECCSEEEECTTCCEEEEEEEEEESCCE--EEEEETTEESSCSSS--CSEEEEEETT--EEEEEECCCSGGGCEEEEE
T ss_pred CcccCCceEEEECCCCEEEEEEEeecCCCE--EEEEECCeECCCCCC--ccEEEecCCC--eeEEEEecCChhhCeEEEE
Confidence 344566677899999999999999987775 999999987743221 1222222221 2469999999999999999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.|.|.
T Consensus 94 ~a~n~ 98 (215)
T 3mtr_A 94 TAVNR 98 (215)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 99998
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=71.30 Aligned_cols=74 Identities=23% Similarity=0.332 Sum_probs=53.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+. |.+.|+|++. .+. .+.|+.+.. ......|.|.+++.+|+|.|+|.+.+ ....+.
T Consensus 26 v~l~C~~~~~--p~v~W~k~~~-~~~--------~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~ 89 (108)
T 2dm7_A 26 ATLQCELSKV--APVEWKKGPE-TLR--------DGGRYSLKQ--DGTRCELQIHDLSVADAGEYSCMCGQ---ERTSAT 89 (108)
T ss_dssp EEEEEEBSSS--CCCEEESSSS-BCC--------SSSSCEEEE--ETTEEEEEESSCCTTTCSEEEEEETT---EEEEEE
T ss_pred EEEEEEeCCC--CeeEEEECCE-ECC--------CCCCEEEEe--cCCEEEEEECCCCcccCEEEEEEEcC---CEEEEE
Confidence 3689999875 6899999874 222 235666652 33567899999999999999999965 456677
Q ss_pred EEEeccccee
Q psy13371 81 LNVVVPTAEI 90 (212)
Q Consensus 81 l~v~~~~~~~ 90 (212)
|.|..+|+.+
T Consensus 90 l~V~~~p~~~ 99 (108)
T 2dm7_A 90 LTVRALPARF 99 (108)
T ss_dssp CEEECCCSSC
T ss_pred EEEecCCHHH
Confidence 7787755433
|
| >2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=6.5e-10 Score=78.11 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=72.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeec-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc-
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVG-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV- 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~- 74 (212)
+.|.|.+++.....+.|+|..... +.... .......+|+++..+...+..+|+|.+++.+|+|.|.|.+.+...
T Consensus 19 vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~ 98 (229)
T 2q86_A 19 CVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSA 98 (229)
T ss_dssp EEEEEEECCSCCSCEEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGC
T ss_pred EEEEEEECCCCCcEEEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEcccCcccCccEEEEEEecCcc
Confidence 368999988777789999976422 11111 111123589999876777889999999999999999999976421
Q ss_pred -eeEEEEEEEeccc----ceeeCCCceeeeCCCcEEEEeEEee-CCCCC
Q psy13371 75 -RSFFVNLNVVVPT----AEILGSPDLHVDEGSTINLTCSIKY-SPEPP 117 (212)
Q Consensus 75 -~~~~~~l~v~~~~----~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~ 117 (212)
......|.|.... +.+..+ ......++|.|.+.+ .|.|.
T Consensus 99 ~~g~gt~L~V~~~~~~~~P~V~~~----~~~~~~~tL~Cl~~gf~P~p~ 143 (229)
T 2q86_A 99 LFGSGTQLIVIPYIQNPEPAVYQL----KDPRSQDSTLCLFTDFDSQIN 143 (229)
T ss_dssp EECCCEEEEEECCCSSCCCEEEEE----ECTTSTTCEEEEEEEECTTCC
T ss_pred cccCCEEEEEECcCCCCCCEEEEc----cCCCCCeEEEEEECCcCcCCc
Confidence 1123466665421 111111 112337899999987 45553
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-10 Score=70.63 Aligned_cols=85 Identities=24% Similarity=0.392 Sum_probs=58.9
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|.....+....+.+|+.+.|.|.+.+. |. +.|++++..+.. ..+.....++. ...|.|.++..+|+|.|+
T Consensus 9 p~~~~~~~~~~v~~G~~v~l~C~~~~~--p~--v~W~k~~~~~~~----~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~ 78 (108)
T 2dm7_A 9 ARFTQDLKTKEASEGATATLQCELSKV--AP--VEWKKGPETLRD----GGRYSLKQDGT--RCELQIHDLSVADAGEYS 78 (108)
T ss_dssp CCBCSCCBCCEEETTSCEEEEEEBSSS--CC--CEEESSSSBCCS----SSSCEEEEETT--EEEEEESSCCTTTCSEEE
T ss_pred CeeeecCCcEEEeCCCcEEEEEEeCCC--Ce--eEEEECCEECCC----CCCEEEEecCC--EEEEEECCCCcccCEEEE
Confidence 334444566789999999999998643 55 899999887631 22333333332 245999999999999999
Q ss_pred EEcccCCeeEEEEEEe
Q psy13371 167 CSPSNADVASVYVHVL 182 (212)
Q Consensus 167 C~~~n~~~~~~~~~v~ 182 (212)
|.+.|. .....+.|.
T Consensus 79 C~a~n~-~~~~~l~V~ 93 (108)
T 2dm7_A 79 CMCGQE-RTSATLTVR 93 (108)
T ss_dssp EEETTE-EEEEECEEE
T ss_pred EEEcCC-EEEEEEEEe
Confidence 999764 344445553
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=70.37 Aligned_cols=67 Identities=16% Similarity=0.384 Sum_probs=48.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.| |.+.|+|++. .+.. +.|+.+. +..|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 27 v~l~C~~~g~p-p~i~W~k~g~-~~~~--------~~~~~~~------~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~ 90 (95)
T 2ckn_A 27 LQLRCRLRDDV-QSINWLRDGV-QLVE--------SNRTRIT------GEEVEVRDSIPADSGLYACVTSSPSGSDTTYF 90 (95)
T ss_dssp EEEECCEESSC-CEEEEEBTTB-CCCC--------CSSEEEC------SSEEEESSCCGGGSEEEEEEEEETTEEEEEEE
T ss_pred EEEEEECCCCC-CceEEEECCE-ecCC--------CCCEEEe------CCEEEECCCChHHCEEEEEEeccCCCcEEEEE
Confidence 36899999998 8999999663 2221 2344443 338999999999999999999986 4445555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 91 ~l~V 94 (95)
T 2ckn_A 91 SVNV 94 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
|
| >1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.6e-12 Score=87.35 Aligned_cols=158 Identities=11% Similarity=0.134 Sum_probs=51.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-- 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-- 73 (212)
+.|.|.+.+.. ..+.|+|..... +... .......++|+.+..+...+..+|+|.+++.+|+|.|.|.+.+..
T Consensus 19 v~L~C~~s~~~-~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~ 97 (207)
T 1ymm_D 19 ATMNCSYKTSI-NNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGT 97 (207)
T ss_dssp CCBCCBCSSCE-EEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEEETTSC
T ss_pred EEEEEEecCCC-ceEEEEEECCCCCcEEEEEEcCCCccccCCCEEEEEcCCCCEEEEEECcCCcccCceEEEEEEcCCCc
Confidence 46899998877 899999976321 1111 111112357888875555667899999999999999999987631
Q ss_pred -c--eeEEEEEEEecc----cceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeecC
Q psy13371 74 -V--RSFFVNLNVVVP----TAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145 (212)
Q Consensus 74 -~--~~~~~~l~v~~~----~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 145 (212)
. ......|.|... .+.+..+. ...+.++|.|.+.+. |.| .+.... +..... .. ....+.+
T Consensus 98 ~~~~~g~gt~L~V~~~~~~~~P~V~~~~----~~~~~vtL~C~~~gf~P~p--~v~~~~-~~~~~~---t~--~~~~~~~ 165 (207)
T 1ymm_D 98 YKYIFGTGTRLKVLANIQNPDPAVYQLR----DSKSSDKSVCLFTDFDSQT--NVSQSK-DSDVYI---TD--KTVLDMR 165 (207)
T ss_dssp SCEEECC-------------------------------------------------------------------------
T ss_pred ceeeECCCEEEEEECCCCCCCCEEEecC----CCCCCeEEEEEccccccCC--cccccc-ccceee---cC--Cceeccc
Confidence 1 112235555432 11111111 112478999999874 444 352211 111100 00 0001111
Q ss_pred ceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 146 EVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 146 ~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
...+. .+......+...|+|.+.+..
T Consensus 166 -~~~S~-t~~~~~w~~~~~~tC~V~~~~ 191 (207)
T 1ymm_D 166 -SMDFK-SNSAVAWSNKSDFACANAFNN 191 (207)
T ss_dssp ----------------------------
T ss_pred -ccccc-ccchhhcCCCCceEEEEEeCC
Confidence 22333 454555566779999987653
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=70.76 Aligned_cols=70 Identities=16% Similarity=0.333 Sum_probs=49.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.| |.+.|+|++. .+.. +.++.+. ...|.|.+++.+|+|.|+|.+.+. +.....+
T Consensus 21 v~L~C~~~g~p-p~i~W~k~g~-~~~~--------~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 84 (99)
T 2cr3_A 21 LQLRCRLRDDV-QSINWLRDGV-QLAE--------SNRTRIT------GEEVEVQDSVPADSGLYACVTSSPSGSDTTYF 84 (99)
T ss_dssp EEEECCCCSSC-CEEEEEESSS-BCCC--------CSSEEEC------SSEEEETTCCTTTCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEecCCC-CeEEEEECCE-ECCC--------CCcEEEE------CCEEEEccCCHHHCEEEEEEEEeCCceEEEEE
Confidence 46899999987 7999999873 2211 2244432 238999999999999999999986 3445555
Q ss_pred EEEEecc
Q psy13371 80 NLNVVVP 86 (212)
Q Consensus 80 ~l~v~~~ 86 (212)
.|.|...
T Consensus 85 ~l~V~~~ 91 (99)
T 2cr3_A 85 SVNVSDA 91 (99)
T ss_dssp EECBCSC
T ss_pred EEEEecC
Confidence 5555443
|
| >4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.5e-10 Score=67.72 Aligned_cols=67 Identities=25% Similarity=0.475 Sum_probs=50.5
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
.|....+.+|+.+.|.|.+.+ .| .+.|++++..+... .+... ..+ .|.|.++..+|+|.|+|.|.|
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~~--~p--~v~W~k~g~~~~~~----~~~~~-~~~-----~L~i~~~~~~D~G~Y~C~a~n 72 (95)
T 4hwu_A 7 QPEAYVVAPGESLELQCMLKD--AA--VISWTKDGVHLGPN----NRTVL-IGE-----YLQIKGATPRDSGLYACTAAR 72 (95)
T ss_dssp -CEEEEECTTSCEEEECCCCT--TC--EEEEEETTEEECCC----SSEEE-ETT-----EEEECSCCGGGCEEEEEEEEC
T ss_pred CCCcEEECCCCEEEEEEEeCC--CC--EEEEEECCEECCCC----ceEEE-eCC-----EEEECcCCcccCEEEEEEEcc
Confidence 345567899999999999874 34 49999999877321 12222 222 499999999999999999999
Q ss_pred C
Q psy13371 172 A 172 (212)
Q Consensus 172 ~ 172 (212)
.
T Consensus 73 ~ 73 (95)
T 4hwu_A 73 T 73 (95)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-09 Score=77.75 Aligned_cols=111 Identities=11% Similarity=0.118 Sum_probs=73.8
Q ss_pred EEEEcccCCCCCEEEEEEecCCC-ceeEEEEEEEecccce-eeCCCceeeeCCCcEEEEeEEeeCCCC-CceEEEEEcCe
Q psy13371 51 TLHIKWAQKRDAGVYECQLSTQP-VRSFFVNLNVVVPTAE-ILGSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWYHHDE 127 (212)
Q Consensus 51 ~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~~~ 127 (212)
.+.|.+++.+ |.|.|.+...+ ..+..+.+.|..+|.. ...+....+.+|+.++|.|.+.+.++. ...+.|+++++
T Consensus 51 ~~~l~~v~~~--~~y~C~~~~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~ 128 (291)
T 1mq8_A 51 VYELSNVQED--SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEK 128 (291)
T ss_dssp EEEEESCCSC--CCCEEEEECSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSS
T ss_pred EEEEEecccC--CeEEEEEEcCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCE
Confidence 5678888743 46999998653 5566667888766532 223333458889999999999876322 23589999998
Q ss_pred EEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 128 VISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+...... .......+.+.....++.+.|+|.|.|.
T Consensus 129 ~l~~~~~~---------~~~~~~~l~~~~~~~D~g~~~~C~A~~~ 164 (291)
T 1mq8_A 129 ELKREPAV---------GEPAEVTTTVLVRRDHHGANFSCRTELD 164 (291)
T ss_dssp EEEEEECC---------BTTEEEEEECCCSSSCSSCEEEEEEEEE
T ss_pred EeecccCC---------CCCceEEEEeeeeeccCCceEEEEEEec
Confidence 87533211 1112234666666666767999999975
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-09 Score=74.40 Aligned_cols=79 Identities=24% Similarity=0.421 Sum_probs=59.6
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.....+....+.+|+.+.|.|.+.+.|.+. +.|++++..+.. ........++. ...|.|.++..+|+|.|
T Consensus 7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~--v~W~~~~~~~~~----~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y 78 (197)
T 3lcy_A 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPD--IKWYRFGKELIQ----SRKYKMSSDGR--THTLTVMTEEQEDEGVY 78 (197)
T ss_dssp EEEEEECCCCEEEETTSEEEEEEEEEEESCCE--EEEEETTEEECC----CSSEEEEESSS--EEEEEEECCSGGGCEEE
T ss_pred CCcccccCCceEEeCCCcEEEEEEEecCCCCE--EEEEECCEECCC----CccEEEEeCCC--EEEEEEecCCccCCEEE
Confidence 44455666778899999999999998876665 999999987732 22233333332 23599999999999999
Q ss_pred EEEcccC
Q psy13371 166 SCSPSNA 172 (212)
Q Consensus 166 ~C~~~n~ 172 (212)
+|.+.|.
T Consensus 79 ~C~~~n~ 85 (197)
T 3lcy_A 79 TCIATNE 85 (197)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 9999986
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-10 Score=69.16 Aligned_cols=85 Identities=26% Similarity=0.427 Sum_probs=58.9
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.....+....+.+|+.+.|.|.+.+.|.| +.|++++..+.. ..+.....++. ...|.|.++..+|+|.|+|
T Consensus 10 ~~~~~~~~~~v~~G~~v~l~C~~~~~p~~---v~W~k~~~~l~~----~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C 80 (103)
T 2e7b_A 10 RFQEALKDLEVLEGGAATLRCVLSSVAAP---VKWCYGNNVLRP----GDKYSLRQEGA--MLELVVRNLRPQDSGRYSC 80 (103)
T ss_dssp CCTBCCCCEEEESSSCEEEEEECSSCCCS---CEEEESSSBCCC----SSSEEEEECSS--EEEEEECSCCTTTCCCEEE
T ss_pred EEEecCccEEEECCCcEEEEEEEeCCCCC---eEEEECCEECCC----CCcEEEEEcCC--EEEEEEccCCcccCEEEEE
Confidence 34445667889999999999999876544 899999887631 22333333333 2459999999999999999
Q ss_pred EcccCCeeEEEEEEe
Q psy13371 168 SPSNADVASVYVHVL 182 (212)
Q Consensus 168 ~~~n~~~~~~~~~v~ 182 (212)
.+.+ ......+.|.
T Consensus 81 ~~g~-~~~~~~l~V~ 94 (103)
T 2e7b_A 81 SFGD-QTTSATLTVT 94 (103)
T ss_dssp ECSS-CBCCBCEEEE
T ss_pred EECC-cEEEEEEEEE
Confidence 9544 3333444443
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=70.75 Aligned_cols=72 Identities=21% Similarity=0.302 Sum_probs=51.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+. .|.+.+.|+|++. .+. .+.++.+. .......|.|.+++.+|+|.|+|.+.+. ...+.
T Consensus 29 v~L~C~~~-~p~~~v~W~k~g~--~~~-------~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~~~---~~~~~ 93 (102)
T 2eo1_A 29 ATLSCEVA-QAQTEVTWYKDGK--KLS-------SSSKVRVE--AVGCTRRLVVQQAGQAEAGEYSCEAGGQ---QLSFR 93 (102)
T ss_dssp EEECCBCS-CSSSCCEEEETTE--ECC-------CCSSEEEE--EETTEEEEEETTCCTTTCSCEEEEETTE---ECCEE
T ss_pred EEEEEEec-CCCCceEEEECCE--ECC-------CCCCEEEE--EcCCEEEEEECCCCcccCEEEEEEcCCC---cEEEE
Confidence 36899998 8889999999873 222 12355554 2334568999999999999999999753 34466
Q ss_pred EEEeccc
Q psy13371 81 LNVVVPT 87 (212)
Q Consensus 81 l~v~~~~ 87 (212)
|.|.+++
T Consensus 94 l~V~~p~ 100 (102)
T 2eo1_A 94 LQVAGQC 100 (102)
T ss_dssp EEEESCC
T ss_pred EEEeCCC
Confidence 7776553
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.7e-10 Score=69.57 Aligned_cols=80 Identities=10% Similarity=0.113 Sum_probs=53.1
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecce--eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSY--TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 79 (212)
.|.|.+++ .|.+.|+|++. .+...... ......|+.+. .....++|+|.+++.+|+|.|+|...+. ....+
T Consensus 27 ~f~C~vs~--~p~v~W~knG~-~l~~~~~~~~~~~~~~r~~i~--~~g~~~~L~I~~v~~~D~G~Y~~~~~~~--~~ssA 99 (112)
T 2e6q_A 27 VFSLDLST--IIQGTWFLNGE-ELKSNEPEGQVEPGALRYRIE--QKGLQHRLILHAVKHQDSGALVGFSCPG--VQDSA 99 (112)
T ss_dssp EEEEEESS--CCCCEEEESSC-BCCSSCCCTTSCTTSCEEEEC--CBTTEEEEEEESCCSTTCSEEEEEEETT--EEEEE
T ss_pred EEEEEECC--CCeEEEEECCE-ECccCcccccccccccEEEEE--eCCcEEEEEECCCCHHHCccEEEEEECC--eeEEE
Confidence 68999997 78899999884 33221100 00000166654 3445779999999999999997754443 45577
Q ss_pred EEEEecccc
Q psy13371 80 NLNVVVPTA 88 (212)
Q Consensus 80 ~l~v~~~~~ 88 (212)
.|.|..+|.
T Consensus 100 ~L~V~~~p~ 108 (112)
T 2e6q_A 100 ALTIQESSG 108 (112)
T ss_dssp EEEEECSSC
T ss_pred EEEEeCCCc
Confidence 888887663
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-10 Score=70.07 Aligned_cols=66 Identities=23% Similarity=0.400 Sum_probs=50.4
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
....+.+|+.+.|.|.+.+.| | .+.|++++..+... .+.... . ..|.|.++..+|+|.|+|.|.|.
T Consensus 11 ~~~~v~~G~~v~L~C~~~g~p-p--~i~W~k~g~~~~~~----~~~~~~-~-----~~L~i~~v~~~D~G~Y~C~a~n~ 76 (99)
T 2cr3_A 11 ESFLVHPGDLLQLRCRLRDDV-Q--SINWLRDGVQLAES----NRTRIT-G-----EEVEVQDSVPADSGLYACVTSSP 76 (99)
T ss_dssp EECCBCTTSCEEEECCCCSSC-C--EEEEEESSSBCCCC----SSEEEC-S-----SEEEETTCCTTTCEEEEEEEEET
T ss_pred cCeEEeCCCcEEEEEEecCCC-C--eEEEEECCEECCCC----CcEEEE-C-----CEEEEccCCHHHCEEEEEEEEeC
Confidence 345678999999999998764 5 59999999776321 122222 2 24999999999999999999998
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.9e-10 Score=69.89 Aligned_cols=77 Identities=16% Similarity=0.366 Sum_probs=52.4
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeC----CCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
+....+.+|+.++|.|.+.+.|.+. +.|++.+..+.... ....+....... ....+|.|.+++.+|+|.|+|.
T Consensus 8 ~~~~~v~~G~~v~L~C~~~~~p~~~--v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~v~~~DsG~Y~C~ 84 (124)
T 3rbg_A 8 TETITVEEGQTLTLKCVTSLRKNSS--LQWLTPSGFTIFLNEYPVLKNSKYQLLHHS-ANQLSITVPNVTLQDEGVYKCL 84 (124)
T ss_dssp EEEEEEETTSCEEEEEECCCCTTCE--EEEECTTSCEEEETTEECSCSSCCEEEEEE-TTEEEEEESSCCGGGCEEEEEE
T ss_pred CccEEEcCCCCEEEEeEEeccCCCE--EEEECCCCeEEEEeccccccCCcEEEEeCC-CCEEEEEECCCChHHCEEEEEE
Confidence 3456789999999999998776554 99997665432210 111222222111 1124699999999999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
+.|.
T Consensus 85 a~n~ 88 (124)
T 3rbg_A 85 HYSD 88 (124)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9987
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.10 E-value=4.3e-10 Score=69.06 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=48.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+ +.|.+.+.|+|++. .+.. + +.++.+.. .+....|.|.+++.+|+|.|+|.+.+ ....+.
T Consensus 34 v~L~C~~-~~p~~~v~W~k~g~-~l~~-~------~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~~---~~~~~~ 99 (104)
T 1pd6_A 34 IRLTVEL-ADHDAEVKWLKNGQ-EIQM-S------GSKYIFES--IGAKRTLTISQCSLADDAAYQCVVGG---EKCSTE 99 (104)
T ss_dssp EEEEEEC-SSSSSCCEEEESSS-EECC-C------SSSSEEEE--ETTEEEEEECSCSSSSCEEEEEEETT---EEECCE
T ss_pred EEEEEEE-cCCCCEEEEEECCE-ECCC-C------CCeEEEEe--cCCEEEEEECCCCcccCEEEEEEECC---CcEEEE
Confidence 3689999 68889999999874 2221 1 14666552 23466899999999999999999955 233344
Q ss_pred EEE
Q psy13371 81 LNV 83 (212)
Q Consensus 81 l~v 83 (212)
|.|
T Consensus 100 l~V 102 (104)
T 1pd6_A 100 LFV 102 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=4.2e-11 Score=75.83 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=54.6
Q ss_pred CeeEeeeCCCCCce-EEEEeeCcceeeeecceeeecCCceEEEeeCCCC--eEEEEEcccCCCCC-EEEEEEecCC-Cce
Q psy13371 1 MLHQRKLKGLLPTR-VSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGD--EWTLHIKWAQKRDA-GVYECQLSTQ-PVR 75 (212)
Q Consensus 1 ~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~L~i~~~~~~d~-G~Y~C~~~~~-~~~ 75 (212)
+.|.|.+.|.|.|. +.|++++. .+.. . .+.|+.+......+ ...|.|.+++.+|. |.|+|.+.|. +..
T Consensus 31 v~l~C~~~g~P~p~~i~W~~~~~-~l~~-~-----~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~ 103 (122)
T 2cry_A 31 GQIKCFIRSTPPPDRIAWSWKEN-VLES-G-----TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD 103 (122)
T ss_dssp CCCCEEECCSSCCSEEEEESSSC-EECS-E-----EETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEE
T ss_pred EEEEEEEeecCCCcEeEEEECCE-EccC-C-----CCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCeE
Confidence 46899999999987 99999873 2221 1 13466654222222 55899999999999 9999999996 445
Q ss_pred eEEEEEEEec
Q psy13371 76 SFFVNLNVVV 85 (212)
Q Consensus 76 ~~~~~l~v~~ 85 (212)
...+.|.|..
T Consensus 104 ~~~~~l~V~~ 113 (122)
T 2cry_A 104 TEIIRLKEQG 113 (122)
T ss_dssp EEEECCCCSC
T ss_pred EEEEEEEECC
Confidence 5555555544
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-09 Score=73.49 Aligned_cols=78 Identities=23% Similarity=0.416 Sum_probs=57.1
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
+...|....+.+|+.+.|.|.+.+.|.+. +.|++++..+.. .........+....+.|.|.++..+|+|.|+|.
T Consensus 5 ~~~~p~~~~v~~G~~v~l~C~~~~~p~~~--v~W~k~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 78 (182)
T 1rhf_A 5 LMGAPVKLTVSQGQPVKLNCSVEGMEEPD--IQWVKDGAVVQN----LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQ 78 (182)
T ss_dssp --CCCEEEEEETTCCEEEEEEEESCSSCC--EEEEETTEECCS----SEEEEEEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred EEeCCcceEEeCCCcEEEEEEEeCCCCCe--EEEEECCeecCC----CCceEEEecCCCceEEEEEeecCcccCeEEEEE
Confidence 33445667889999999999999866666 999999987632 122222333333345799999999999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
+.|.
T Consensus 79 ~~~~ 82 (182)
T 1rhf_A 79 VEDG 82 (182)
T ss_dssp ESSC
T ss_pred EEcC
Confidence 9986
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=70.97 Aligned_cols=73 Identities=14% Similarity=0.275 Sum_probs=49.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+..... ...+... .....|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 26 v~l~C~~~g~p~p~v~W~~~~~--~~~~~~~----~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~ 95 (100)
T 3caf_A 26 VKFRCPAGGNPMPTMRWLKNGK--EFKQEHR----IGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 95 (100)
T ss_dssp EEEECCEEEESCCEEEEEETTE--ECCGGGS----TTCCEEE----GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEccccCCCEEEEEECCE--Ecccccc----cccEEEe----cCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEE
Confidence 3689999999999999999773 2221110 0112222 12347999999999999999999986 3444555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 96 ~l~V 99 (100)
T 3caf_A 96 HLDV 99 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=69.06 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=46.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc--eeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV--RSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~ 78 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. .....|.|.+++.+|+|.|+|.+.|... .+..
T Consensus 21 ~~l~C~~~g~p~p~i~W~~~~~--~~~~------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~ 80 (91)
T 3bfo_A 21 LVLQCVAVGSPIPHYQWFKNEL--PLTH------------------ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKK 80 (91)
T ss_dssp EEEECEEECSSCCEEEEEETTE--ECTT------------------CCSSEEEESSCCGGGCEEEEEEEECSSCEEECCC
T ss_pred EEEEEEeccCCCCEEEEEcCCe--eCCc------------------CCCCeEEECCCCHHhCEEEEEEEEcCCCCEEeee
Confidence 3689999999999999999763 2211 1123799999999999999999998632 2234
Q ss_pred EEEEEe
Q psy13371 79 VNLNVV 84 (212)
Q Consensus 79 ~~l~v~ 84 (212)
+.|.|.
T Consensus 81 ~~l~V~ 86 (91)
T 3bfo_A 81 VEIIID 86 (91)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 555553
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-10 Score=67.63 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=48.2
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+. +.|.+.+.|+|++..... .+... .+..|.|.+++.+|+|.|+|.+.|. +..+..
T Consensus 28 v~l~C~~~~~~p~~~v~W~k~~~~~~~----------~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 91 (98)
T 1gl4_B 28 VTFICTAKSKSPAYTLVWTRLHNGKLP----------SRAMD------FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT 91 (98)
T ss_dssp EEEEEEEEESSSCCEEEEEEGGGBCCC----------TTEEE------ETTEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred EEEEEeCCCCCCCcEEEEEeCCCCCCC----------ceeec------CCCEEEEeCCChhhCEEEEEEecCCCCccccE
Confidence 46899998 689999999997532211 11111 1227999999999999999999986 445555
Q ss_pred EEEEEe
Q psy13371 79 VNLNVV 84 (212)
Q Consensus 79 ~~l~v~ 84 (212)
+.|.|.
T Consensus 92 ~~l~V~ 97 (98)
T 1gl4_B 92 ATLHVQ 97 (98)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 666553
|
| >1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-10 Score=77.54 Aligned_cols=113 Identities=16% Similarity=0.139 Sum_probs=70.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeec-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC---
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVG-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--- 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--- 72 (212)
+.|.|.+.+.....+.|+|..... +.... .......+|+.+..+...+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 19 v~L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~ 98 (194)
T 1lp9_E 19 VMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSS 98 (194)
T ss_dssp EEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEECSSS
T ss_pred EEEEEEeCCCCCceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCcccCeeEEEEEecccCC
Confidence 368999988777889999976322 11111 0111225799887555566789999999999999999998752
Q ss_pred -Cc--eeEEEEEEEeccc----ceeeCCCceeeeCCCcEEEEeEEeeC-CCCC
Q psy13371 73 -PV--RSFFVNLNVVVPT----AEILGSPDLHVDEGSTINLTCSIKYS-PEPP 117 (212)
Q Consensus 73 -~~--~~~~~~l~v~~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~ 117 (212)
.. ......|.|.... +.+.. .....+.++|.|.+.+. |.|.
T Consensus 99 ~~~~~~g~gt~L~V~~~~~~~~P~V~~----~~~~~~~~tL~Cl~~gf~P~~~ 147 (194)
T 1lp9_E 99 FSKLVFGQGTSLSVVPNIQNPEPAVYQ----LKDPRSQDSTLCLFTDFDSQIN 147 (194)
T ss_dssp SCEEEECCCEEEEEECCCSSCCCEEEE----EECTTSSSCEEEEEESCCTTSC
T ss_pred cceeeeccCceEEecCcCCCCCCeeEe----cCCCCCCcEEEEEeecccCCcc
Confidence 11 1123466665321 11111 01112368999999884 5553
|
| >3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7.1e-10 Score=71.21 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=53.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-----ce
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-----VR 75 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~ 75 (212)
+.|.|.+.+. +.+.|+|+........ ....++||.+.. .....+|+|.+++.+|+|.|+|.+.+.. ..
T Consensus 35 v~L~C~~~~~--~~v~W~r~~~g~~~~~---l~~~~~r~~~~~--~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 107 (133)
T 3khq_A 35 VKFHCYTNHS--GALTWFRKRGSQQPQE---LVSEEGRIVQTQ--NGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTD 107 (133)
T ss_dssp EEEEEEESSS--SCEEEEEECTTSCCEE---CCCTTTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEESSCC-------
T ss_pred EEEEEEeCCC--CEEEEEEeCCCCCCEE---EEEeCCCEEEEc--CCCEEEEEECCCChHHCEEEEEEEEeCCCCcceeE
Confidence 3689999987 8999999853221110 012367888874 3467889999999999999999998853 12
Q ss_pred eEEEEEEEeccc
Q psy13371 76 SFFVNLNVVVPT 87 (212)
Q Consensus 76 ~~~~~l~v~~~~ 87 (212)
.....|.|...+
T Consensus 108 g~gt~L~V~~~p 119 (133)
T 3khq_A 108 SCGTELLVLGFS 119 (133)
T ss_dssp CCCEEEEEC---
T ss_pred CCCEEEEEEecc
Confidence 334566666533
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=75.54 Aligned_cols=90 Identities=27% Similarity=0.387 Sum_probs=63.1
Q ss_pred cccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEe-ecCceEEEEEEEeeee-ecCC
Q psy13371 85 VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT-EKGEVTTSYLLIQQAE-LKDS 162 (212)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~-~~d~ 162 (212)
.+|.....+....+.+|+.+.|.|.+.+.|.+. +.|++++..+.. ....... ..+. .+.|.|.++. .+|+
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~--v~W~k~~~~~~~----~~~~~~~~~~~~--~~~L~i~~v~~~~d~ 76 (212)
T 2yd6_A 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPK--IVWNKKGKKVSN----QRFEVIEFDDGS--GSVLRIQPLRTPRDE 76 (212)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCE--EEEEETTEECCC----TTEEEEEEGGGT--EEEEEECSCCTTTTC
T ss_pred CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCE--EEEEECCcCCCC----CceeEEEEcCCC--ceEEEEeccCCCCCC
Confidence 345555667778899999999999999876665 999999987731 1111111 1111 2459999994 9999
Q ss_pred EEEEEEcccCC---eeEEEEEEe
Q psy13371 163 GKYSCSPSNAD---VASVYVHVL 182 (212)
Q Consensus 163 g~y~C~~~n~~---~~~~~~~v~ 182 (212)
|.|+|.+.|.. ...+.+.|.
T Consensus 77 G~Y~C~a~n~~g~~~~~~~l~V~ 99 (212)
T 2yd6_A 77 AIYECVASNNVGEISVSTRLTVL 99 (212)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEEEEEEcCCCcEEEEEEEEEe
Confidence 99999999873 334455554
|
| >1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.8e-10 Score=70.29 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=55.8
Q ss_pred CeeEeeeCCC----CCceEEEEeeCcce-----eeee-cceeee-----cCCceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGL----LPTRVSWIRHRDIH-----ILTV-GSYTYT-----SDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~----p~~~v~W~~~~~~~-----~~~~-~~~~~~-----~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.+... +.+.+.|++.+... +... .+.... ..+|+.+..+...++.+|+|.+++.+|+|.|
T Consensus 17 v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y 96 (124)
T 1neu_A 17 VTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTF 96 (124)
T ss_dssp EEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEEccCChhhCEEE
Confidence 3689998653 46899999876421 1111 111111 1467777643345677999999999999999
Q ss_pred EEEecCCC---ceeEEEEEEEeccc
Q psy13371 66 ECQLSTQP---VRSFFVNLNVVVPT 87 (212)
Q Consensus 66 ~C~~~~~~---~~~~~~~l~v~~~~ 87 (212)
.|.+.+.. .....+.|.|...|
T Consensus 97 ~C~v~~~~~~~~~~~~v~L~V~~~p 121 (124)
T 1neu_A 97 TCDVKNPPDIVGKTSQVTLYVFEKV 121 (124)
T ss_dssp EEEEEC----CCEEEEEEEEEEC--
T ss_pred EEEEEcCCCCcCcEeeEEEEEecCC
Confidence 99998853 23556777776644
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=74.46 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=58.7
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.....+....+.+|+.+.|.|.+.+.|.+. +.|++++..+..... ........+. ...|.|.++..+|+|.|
T Consensus 4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~--v~W~~~~~~~~~~~~--~~~~~~~~~~--~~~L~i~~~~~~d~G~Y 77 (197)
T 2j8h_A 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPI--VKWYRQGKEIIADGL--KYRIQEFKGG--YHQLIIASVTDDDATVY 77 (197)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSSCCE--EEEEETTEECCCCSS--SEEEEEETTT--EEEEEECSCCGGGCSEE
T ss_pred CCEEEEcCCccEEcCCCEEEEEEEEeecCCCE--EEEEECCEECccCCC--cEEEEEcCCC--EEEEEECcCCHHhCEEE
Confidence 34455566778899999999999998776555 999999987742211 1111222222 13599999999999999
Q ss_pred EEEcccC
Q psy13371 166 SCSPSNA 172 (212)
Q Consensus 166 ~C~~~n~ 172 (212)
+|.+.|.
T Consensus 78 ~C~~~n~ 84 (197)
T 2j8h_A 78 QVRATNQ 84 (197)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999987
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.8e-10 Score=68.15 Aligned_cols=78 Identities=23% Similarity=0.517 Sum_probs=55.0
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCe
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADV 174 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 174 (212)
...+.+|+.+.|.|.+. .|.+. +.|++++..+... .+......+. ...|.|.++..+|+|.|+|.+.|..
T Consensus 20 ~~~v~~G~~v~L~C~~~-~p~~~--v~W~k~g~~~~~~----~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~- 89 (102)
T 2eo1_A 20 EVQAEAGASATLSCEVA-QAQTE--VTWYKDGKKLSSS----SKVRVEAVGC--TRRLVVQQAGQAEAGEYSCEAGGQQ- 89 (102)
T ss_dssp EEEEETTCCEEECCBCS-CSSSC--CEEEETTEECCCC----SSEEEEEETT--EEEEEETTCCTTTCSCEEEEETTEE-
T ss_pred cEEEeCCCcEEEEEEec-CCCCc--eEEEECCEECCCC----CCEEEEEcCC--EEEEEECCCCcccCEEEEEEcCCCc-
Confidence 45788999999999997 55555 9999999877322 2233333332 2459999999999999999997652
Q ss_pred eEEEEEEe
Q psy13371 175 ASVYVHVL 182 (212)
Q Consensus 175 ~~~~~~v~ 182 (212)
.++.+.|.
T Consensus 90 ~~~~l~V~ 97 (102)
T 2eo1_A 90 LSFRLQVA 97 (102)
T ss_dssp CCEEEEEE
T ss_pred EEEEEEEe
Confidence 23444443
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-09 Score=70.97 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=57.1
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcceeee--ecceee------ecCCceEEEeeC-CCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIHILT--VGSYTY------TSDQRFSAIHRR-EGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~~~~--~~~~~~------~~~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ .+.+.|+|.+...... ...... ...+|+.+..+. ..++.+|+|.+++.+|+|.|+|.
T Consensus 24 v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 103 (139)
T 1pko_A 24 AELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCF 103 (139)
T ss_dssp EEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEEEEEE
T ss_pred EEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCHHHCEEEEEE
Confidence 36999998754 3789999977422111 111100 114677776431 34578999999999999999999
Q ss_pred ecCCC-ceeEEEEEEEeccc
Q psy13371 69 LSTQP-VRSFFVNLNVVVPT 87 (212)
Q Consensus 69 ~~~~~-~~~~~~~l~v~~~~ 87 (212)
+.+.. .....+.|.|..|.
T Consensus 104 v~~~~~~~~~~~~L~V~~P~ 123 (139)
T 1pko_A 104 FRDHSYQEEAAVELKVEDPF 123 (139)
T ss_dssp EEETTEEEEEEEEEEEECTT
T ss_pred EEcCCCceEEEEEEEEecCc
Confidence 99863 45566777777544
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-09 Score=73.34 Aligned_cols=78 Identities=23% Similarity=0.257 Sum_probs=55.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC-CCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.|.|.|.+.|++++....+... ..++++.+. .......|.|.+++ .+|+|.|+|.+.|. +.....
T Consensus 110 v~l~C~~~g~p~p~i~W~~~~~g~~~~~~----~~~~~~~~~--~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~ 183 (190)
T 2wv3_A 110 AMMYCKSVGYPHPEWMWRKKENGVFEEIS----NSSGRFFII--NKENYTELNIVNLQITEDPGEYECNATNSIGSASVS 183 (190)
T ss_dssp EEEEEEEECSSCCEEEEEEEETTEEEECC----CTTSCEEEE--ECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEE
T ss_pred EEEEEEeCccCCCceEEEEcCCCceeeee----cCCCeEEEe--cCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeE
Confidence 36899999999999999995322333211 124566665 23455689999999 79999999999986 455556
Q ss_pred EEEEEe
Q psy13371 79 VNLNVV 84 (212)
Q Consensus 79 ~~l~v~ 84 (212)
+.|.|.
T Consensus 184 ~~l~V~ 189 (190)
T 2wv3_A 184 TVLRVR 189 (190)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666654
|
| >4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.9e-10 Score=66.89 Aligned_cols=70 Identities=27% Similarity=0.385 Sum_probs=50.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+ .|.+.|+|++. .+. .+.|+... +..|.|.+++.+|+|.|+|.+.+. +..+..+
T Consensus 19 ~~l~C~~~~--~p~v~W~k~g~--~~~-------~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~ 81 (95)
T 4hwu_A 19 LELQCMLKD--AAVISWTKDGV--HLG-------PNNRTVLI------GEYLQIKGATPRDSGLYACTAARTVDSETWIF 81 (95)
T ss_dssp EEEECCCCT--TCEEEEEETTE--EEC-------CCSSEEEE------TTEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEeCC--CCEEEEEECCE--ECC-------CCceEEEe------CCEEEECcCCcccCEEEEEEEccCCCcEEEEE
Confidence 368999987 57999999763 222 12344443 237999999999999999999986 4556666
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|..++
T Consensus 82 ~l~V~~~~ 89 (95)
T 4hwu_A 82 MVNVTDAA 89 (95)
T ss_dssp EEEECCC-
T ss_pred EEEEeCCc
Confidence 77766543
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=9.3e-10 Score=76.05 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=56.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.|.+.|+|++. .+. .+.++.+.. .......|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 135 ~~l~C~~~g~p~p~v~W~~~~~--~~~-------~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~ 204 (212)
T 2r15_A 135 LNLTCNVWGDPPPEVSWLKNEK--ALA-------QTDHCNLKF-EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDF 204 (212)
T ss_dssp EEEEEEEECSSCCEEEEEETTE--EEC-------CCSSEEEEE-ETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEcCCCCceEEEEECCe--ECc-------cCCCEEEEE-cCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEE
Confidence 3689999999999999999873 222 133555543 2245678999999999999999999986 4556666
Q ss_pred EEEEecc
Q psy13371 80 NLNVVVP 86 (212)
Q Consensus 80 ~l~v~~~ 86 (212)
.|.|..|
T Consensus 205 ~l~V~~P 211 (212)
T 2r15_A 205 TVSVFIP 211 (212)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 6766543
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=74.74 Aligned_cols=81 Identities=27% Similarity=0.389 Sum_probs=58.6
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.....+....+.+|+.+.|.|.+.+.|.+. +.|++++..+....... .......+ ...|.|.++..+|+|.|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~--v~W~~~~~~~~~~~~~~-~~~~~~~~---~~~L~i~~~~~~d~G~Y 78 (194)
T 2a38_A 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPE--VSWFRDGQVISTSTLPG-VQISFSDG---RAKLTIPAVTKANSGRY 78 (194)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCE--EEEEESSSBCCTTTSTT-CEEEEETT---EEEEEESSCCGGGCEEE
T ss_pred CCeEEccCCceEEECCCEEEEEEEEEecCCCE--EEEEECCEEcccccCCc-eEEEeCCC---EEEEEECCCCcccCEEE
Confidence 34455566778899999999999998876665 99999998764322111 11112222 14599999999999999
Q ss_pred EEEcccC
Q psy13371 166 SCSPSNA 172 (212)
Q Consensus 166 ~C~~~n~ 172 (212)
+|.+.|.
T Consensus 79 ~C~~~n~ 85 (194)
T 2a38_A 79 SLKATNG 85 (194)
T ss_dssp EEEEEET
T ss_pred EEEEEcC
Confidence 9999987
|
| >2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-09 Score=67.60 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=52.5
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
...|....+.+|+.++|.|.+.+...+...+.|+++. ...........+.....+.......|.|.+++.+|+|.|.|
T Consensus 4 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 83 (111)
T 2ywz_A 4 DQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKC 83 (111)
T ss_dssp EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred EECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEE
Confidence 3446667899999999999997653244459999863 21100001112222221111123569999999999999999
Q ss_pred Eccc
Q psy13371 168 SPSN 171 (212)
Q Consensus 168 ~~~n 171 (212)
.+.+
T Consensus 84 ~~~~ 87 (111)
T 2ywz_A 84 QADY 87 (111)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9987
|
| >1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-09 Score=64.42 Aligned_cols=75 Identities=24% Similarity=0.404 Sum_probs=53.3
Q ss_pred eeeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEEee--CCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVISYD--SSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+..|+.+.|.|.+.+ .+.|. |.|.+.+...... ..........+.+....+.|.|.++..+|+|.|+|.|.+.
T Consensus 24 ~tv~~G~~~~LeCpv~yc~~rPn--VtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~ 101 (122)
T 1xau_A 24 HSAWTGELFKIECPVKYCVHRPN--VTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 101 (122)
T ss_dssp EEECTTSCEEEEEEEECSSSCCC--EEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred EEEecCCeEEEEeEecCCCCCCc--EEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCC
Confidence 45788999999999976 45676 9999876321111 1111122344455555677999999999999999999986
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-10 Score=70.02 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=47.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-C--ceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-P--VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~--~~~~ 77 (212)
+.|.|.+.+.|.+.+.|+|++. .+.. ..+..|.|.+++.+|+|.|+|.+.+. + ..+.
T Consensus 28 v~l~C~~~g~p~~~v~W~k~~~--~~~~------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~ 87 (96)
T 2ens_A 28 VTLTCEVPAQPSPQIHWMKDGV--PLPL------------------PPSPVLILPEIGPQDQGTYSCVATHSSHGPQESR 87 (96)
T ss_dssp EEEECCCSSCSSCCCCCEESSS--BCSS------------------CCCSEEEEESCCTTTCEEEECEECCSSCCCEECC
T ss_pred EEEEEEEccCCCCEEEEEECCE--ECcC------------------CCCCEEEECCCCcccCEEEEEEEEeCCCCcEEEE
Confidence 3689999999999999999763 2211 12348999999999999999999984 3 2344
Q ss_pred EEEEEEe
Q psy13371 78 FVNLNVV 84 (212)
Q Consensus 78 ~~~l~v~ 84 (212)
.+.|.|.
T Consensus 88 ~~~v~V~ 94 (96)
T 2ens_A 88 AVSISII 94 (96)
T ss_dssp CEEEEEC
T ss_pred EEEEEEe
Confidence 4555553
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.3e-10 Score=75.15 Aligned_cols=84 Identities=19% Similarity=0.355 Sum_probs=60.1
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEe-eCCCCCceEEEEEcCeEEEeeCCCCceeEEe--ecC-ceE--EEEEEEeeeee
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVIT--EKG-EVT--TSYLLIQQAEL 159 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~-~~~--~~~l~i~~~~~ 159 (212)
++.+...|....+.+|+.+.|.|.+. +.|.+. +.|++++..+..... ...... .++ ... .+.|.|.++..
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~--v~W~~~g~~l~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 77 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPE--VHWLRDGQILELADS--TQTQVPLGEDEQDDWIVVSQLRITSLQL 77 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCC--CEEEETTEECCSCEE--EEEEEECSSSTTSEEEEEEEEEESSCCS
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcE--EEEEECCEEcccCCC--CceEEEEccccccceeeccEEEEEeccc
Confidence 34556677888999999999999998 776666 999999987732210 111111 111 111 35699999999
Q ss_pred cCCEEEEEEcccCC
Q psy13371 160 KDSGKYSCSPSNAD 173 (212)
Q Consensus 160 ~d~g~y~C~~~n~~ 173 (212)
+|+|.|+|.+.|..
T Consensus 78 ~d~G~Y~C~~~~~~ 91 (195)
T 2c5d_C 78 SDTGQYQCLVFLGH 91 (195)
T ss_dssp TTCEEEEEEEEETT
T ss_pred cCCcEEEEEEEeCC
Confidence 99999999999873
|
| >2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.9e-10 Score=69.17 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=51.0
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcce----eeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIH----ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.. .+.+.|+|..... +...........+|+.+..+...+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 14 v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 90 (110)
T 2q87_A 14 LSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTP 90 (110)
T ss_dssp EEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECT
T ss_pred EEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEEEEEEEecC
Confidence 36899998754 4789999976321 111110000135789887655667889999999999999999999876
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.1e-10 Score=67.39 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=51.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+ +.|.+.+.|+|++. .+.. +.|+.+. .......|+|.+++.+|+|.|+|.+. .....+.
T Consensus 26 v~l~C~~-~~p~~~v~W~k~~~-~l~~--------~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~~g---~~~~~~~ 90 (103)
T 2dku_A 26 AVFTCKT-EHPAATVTWRKGLL-ELRA--------SGKHQPS--QEGLTLRLTISALEKADSDTYTCDIG---QAQSRAQ 90 (103)
T ss_dssp EEEEEEC-SSCCSCCEEEESSC-BCCS--------SSSEEEE--EETTEEEEEEESCCTTTCSEEEEECS---SCBCCEE
T ss_pred EEEEEEe-CCCCCeEEEEeCCE-ECCC--------CCeEEEE--eCCCEEEEEECCCCcccCEEEEEEeC---CceEEEE
Confidence 3689995 78889999999873 2221 3466554 23456689999999999999999832 2444567
Q ss_pred EEEeccc
Q psy13371 81 LNVVVPT 87 (212)
Q Consensus 81 l~v~~~~ 87 (212)
|.|...+
T Consensus 91 l~V~~~p 97 (103)
T 2dku_A 91 LLVQGRR 97 (103)
T ss_dssp EEEECSC
T ss_pred EEEeCcc
Confidence 7777654
|
| >2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A | Back alignment and structure |
|---|
Probab=99.04 E-value=8.9e-10 Score=68.47 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=50.3
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+. +.+.+.|+|........ .....++|+....+......+|+|.+++.+|+|.|.|.+.+
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 87 (111)
T 2ywz_A 18 LTIKCVLKDHSCGLSSTTWYRTQLGSTNE---KTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADY 87 (111)
T ss_dssp EEEEEEEESCSSCCCEEEEEEEETTCCCC---EECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEeEECCCCCCCCEEEEEEeCCCCCce---EeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEEEc
Confidence 4699999876 57899999975322110 11123578887655556788999999999999999999986
|
| >1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=8.3e-10 Score=68.23 Aligned_cols=70 Identities=20% Similarity=0.355 Sum_probs=50.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeeccee-eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSYT-YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.|.+.+.|+|..... +....... ...++|+.+.. ..+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 19 v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~n~ 93 (108)
T 1jhl_L 19 ITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG--SGTDFTLTISSLEPEDFAMYICQQHNE 93 (108)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--SSSEEEEEECSCCTTCCSEEEEEECSS
T ss_pred EEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe--cCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 369999999999999999976321 11111110 01246888763 456789999999999999999999985
|
| >1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-08 Score=67.01 Aligned_cols=118 Identities=17% Similarity=0.275 Sum_probs=75.8
Q ss_pred CeEEEEEcccCCCCCEEEEEEecCC-CceeEEEEEEEeccc-ceeeCCCceeeeCCCcEEEEeEEee-CCCCCceEEEEE
Q psy13371 48 DEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVNLNVVVPT-AEILGSPDLHVDEGSTINLTCSIKY-SPEPPAYIFWYH 124 (212)
Q Consensus 48 ~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~ 124 (212)
+-..|+|.+++ |.|.|.|.+... ......+.|+|..+| .....+....+.+|+.++|.|.+.+ .|.....+.|++
T Consensus 50 ~w~~l~l~~vs--~~g~~~C~~~c~~~~~~~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llr 127 (192)
T 1zxq_A 50 QWKHYLVSNIS--HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFR 127 (192)
T ss_dssp TEEEEEEEEEC--SCEEEEEEEEETTEEEEEEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEE
T ss_pred CeEEEEEeccc--cCCeeEEEEECCCcceEEEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEc
Confidence 33468999998 789999999876 355677888887655 2333322236889999999999975 444444579999
Q ss_pred cCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCE-EEEEEcccC
Q psy13371 125 HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSG-KYSCSPSNA 172 (212)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~ 172 (212)
+++.+..+.-... .......+..+.+ ....+|.| .|+|.|.-.
T Consensus 128 G~~~l~~~~f~~~----~~~~~~~tv~~~~-~~~r~D~g~~~sC~A~L~ 171 (192)
T 1zxq_A 128 GNETLHYETFGKA----APAPQEATATFNS-TADREDGHRNFSCLAVLD 171 (192)
T ss_dssp TTEEEEEEECCSS----TTCTTCEEEEEEE-ECCGGGGGCEEEEEEEEE
T ss_pred CCEEeeecccccc----cCcCcceEEEEEE-ecchhhCCceEEEEEEec
Confidence 9988854321110 0111112222334 34555666 999998754
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A | Back alignment and structure |
|---|
Probab=99.04 E-value=5.1e-10 Score=70.27 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=54.4
Q ss_pred CeeEeeeCC--CCCceEEEEeeCcceeeee-cc--eee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-
Q psy13371 1 MLHQRKLKG--LLPTRVSWIRHRDIHILTV-GS--YTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ- 72 (212)
Q Consensus 1 ~~l~C~~~~--~p~~~v~W~~~~~~~~~~~-~~--~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~- 72 (212)
+.|.|.+.+ .+.+.+.|+|++. .+... .. ... ...+|+.+. .+.+|+|.+++.+|+|.|+|.+.+.
T Consensus 21 v~L~C~~~~~~~~~~~v~W~k~~~-~i~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~v~~~~ 94 (117)
T 3q0h_A 21 IILQCHLSSTTAQVTQVNWEQQDQ-LLAICNADLGWHISPSFKDRVAPG-----PGLGLTLQSLTVNDTGEYFCIYHTYP 94 (117)
T ss_dssp EEECEEEESCCCEEEEEEEEETTE-EEEEEETTTEEECCGGGTTTEEEC-----STTCEEECSCCGGGCEEEEEEEEEET
T ss_pred EEEEEEecCCCCCEEEEEEEeCCE-EEEEEECCCCceeCccccCcEEeC-----CceEEEEeeCChhhCEEEEEEEEECC
Confidence 368999987 3456899999763 22111 10 000 113577653 2558999999999999999998652
Q ss_pred -CceeEEEEEEEecccce
Q psy13371 73 -PVRSFFVNLNVVVPTAE 89 (212)
Q Consensus 73 -~~~~~~~~l~v~~~~~~ 89 (212)
+.....+.|.|..||..
T Consensus 95 ~g~~~~~~~L~V~~pp~~ 112 (117)
T 3q0h_A 95 DGTYTGRIFLEVLESSVA 112 (117)
T ss_dssp TCCEEEEEEEEEECC---
T ss_pred CCCeEEEEEEEEEccCcc
Confidence 45677788999887754
|
| >1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.9e-09 Score=64.70 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=53.0
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEeeC-----CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYDS-----SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..|....+.+|+.++|.|.+.+.+.+. +.|+++.. .+.... ....+......+ ....|.|.+++.+
T Consensus 6 q~p~~~~~~~G~~v~L~C~~~~~~~~~--v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~ 81 (108)
T 1jhl_L 6 QSPSYLVASPGETITINCRASKSISKS--LAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG--TDFTLTISSLEPE 81 (108)
T ss_dssp EECSEEEECTTSCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS--SEEEEEECSCCTT
T ss_pred ccCCeeEEcCCCCEEEEeEECCCCCce--EEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecC--CEEEEEECCCCHH
Confidence 445667899999999999998776555 99998641 121110 111222222221 2346999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+.|.
T Consensus 82 DsG~Y~C~~~n~ 93 (108)
T 1jhl_L 82 DFAMYICQQHNE 93 (108)
T ss_dssp CCSEEEEEECSS
T ss_pred HCEEEEEEEccC
Confidence 999999999986
|
| >1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=68.01 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=50.8
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+.+ .+.+.|+|........ .....++|+.+..+......+|+|.+++.+|+|.|.|.+.+
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~g~~~~---~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 87 (113)
T 1sq2_N 18 LTINCVLRDASYALGSTCWYRKKSGEGNE---ESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV 87 (113)
T ss_dssp EEEEEEECSCSSCCCCEEEEEEETTSCCC---EECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred EEEEEEECCCcCCCCEEEEEEeCCCCCce---EeEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence 46999998865 6789999975322111 11223578887755566788999999999999999999987
|
| >1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=67.66 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=50.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce-e---eeecceeeecCCceEEEeeC-CCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH-I---LTVGSYTYTSDQRFSAIHRR-EGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~-~---~~~~~~~~~~~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+ +.+.|+|..... . ...... ...++|+.+..+. .....+|+|.+++.+|+|.|.|.+.+.
T Consensus 19 v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~-~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~ 93 (113)
T 1h5b_A 19 SALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASG-TKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEAS 93 (113)
T ss_dssp EEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSS-EEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCC-CccCCceEEEEccCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence 36999998865 689999876321 1 111110 1235788887544 567889999999999999999999875
|
| >3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.9e-09 Score=67.75 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=59.2
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
....|....+.+|+.++|.|.+.+. +. +.|+++ ++....-.....++....++. ...|.|.+++.+|+|.|.
T Consensus 20 v~q~p~~~~v~~G~~v~L~C~~~~~--~~--v~W~r~~~g~~~~~l~~~~~r~~~~~~~~--~~~L~I~~~~~~DsG~Y~ 93 (133)
T 3khq_A 20 IWQHPRFAAKKRSSMVKFHCYTNHS--GA--LTWFRKRGSQQPQELVSEEGRIVQTQNGS--VYTLTIQNIQYEDNGIYF 93 (133)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSS--SC--EEEEEECTTSCCEECCCTTTTEEEEEETT--EEEEEECSCCGGGCEEEE
T ss_pred eEEcCceEEEeCCCeEEEEEEeCCC--CE--EEEEEeCCCCCCEEEEEeCCCEEEEcCCC--EEEEEECCCChHHCEEEE
Confidence 4455677889999999999999765 44 999987 322211111122333333332 356999999999999999
Q ss_pred EEcccCC-------eeEEEEEEee
Q psy13371 167 CSPSNAD-------VASVYVHVLN 183 (212)
Q Consensus 167 C~~~n~~-------~~~~~~~v~~ 183 (212)
|.+.|.. +....+.|..
T Consensus 94 C~a~n~~g~~~~~~g~gt~L~V~~ 117 (133)
T 3khq_A 94 CKQKCDSANHNVTDSCGTELLVLG 117 (133)
T ss_dssp EEESSCC-------CCCEEEEEC-
T ss_pred EEEEeCCCCcceeECCCEEEEEEe
Confidence 9999863 3445566643
|
| >4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.1e-10 Score=70.76 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=53.4
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcceeee--eccee------eecCCceEEEeeC-CCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIHILT--VGSYT------YTSDQRFSAIHRR-EGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~~~~--~~~~~------~~~~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+...+ ...|.|+|.+....+. ..... ....+|..+..+. ..++.+|+|.+++.+|+|.|+|.
T Consensus 23 v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~D~G~Y~C~ 102 (125)
T 4gos_A 23 GILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDAGTYKCY 102 (125)
T ss_dssp EEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCChHHCEEEEEE
Confidence 36999997543 3479999976422211 11110 1123577765332 34578999999999999999999
Q ss_pred ecCC-CceeEEEEEEE
Q psy13371 69 LSTQ-PVRSFFVNLNV 83 (212)
Q Consensus 69 ~~~~-~~~~~~~~l~v 83 (212)
+.+. +..+..+.|+|
T Consensus 103 v~~~~g~~~~~v~LkV 118 (125)
T 4gos_A 103 IITSKGKGNANLEYKT 118 (125)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEeCCCeEEEEEEEEE
Confidence 9885 34555556655
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-09 Score=83.16 Aligned_cols=90 Identities=18% Similarity=0.306 Sum_probs=61.6
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|.....+....+.+|+.++|.|.+ +.|.|. +.|++++..+........+.....++. |.|.+++.+|+|.|+
T Consensus 342 P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~--i~W~~~~~~~~~~~~~~~~~~~~~~~~-----L~I~~v~~~D~G~Y~ 413 (440)
T 3zyj_A 342 PVIVEPPADLNVTEGMAAELKCRA-STSLTS--VSWITPNGTVMTHGAYKVRIAVLSDGT-----LNFTNVTVQDTGMYT 413 (440)
T ss_dssp CCEEECCCCEEECTTSCCEECCEE-SSTTSE--EEEECTTSCEEESSSCCSSEEECTTCC-----EEESSCCSTTCEEEE
T ss_pred CcccccccceeeccCceEEEEeec-CCCCCc--eEEEeCCCceeeccCCCceEEEccCCe-----EEEccCChhhCEEEE
Confidence 344455677889999999999999 455554 999986554433332233334444443 999999999999999
Q ss_pred EEcccC-CeeEEEEEEeec
Q psy13371 167 CSPSNA-DVASVYVHVLNG 184 (212)
Q Consensus 167 C~~~n~-~~~~~~~~v~~~ 184 (212)
|.|.|. ...+..+.+...
T Consensus 414 C~a~N~~G~~~~~~~~~v~ 432 (440)
T 3zyj_A 414 CMVSNSVGNTTASATLNVT 432 (440)
T ss_dssp EEEECSSCEEEEEEEEEEC
T ss_pred EEEEcCCCcEEEEEEEEEe
Confidence 999998 333334444333
|
| >2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=67.38 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=50.1
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+.+ .+.+.|+|+....... .....++|+.+..+......+|+|.+++.+|+|.|.|.+.+
T Consensus 18 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 87 (108)
T 2coq_A 18 LTINCVLRDTACALDSTNWYRTKLGSTKE---QTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR 87 (108)
T ss_dssp EEEEEEECCSSEEEEEEEEEEEETTCCCE---EECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEeEeCCCcCCCCEEEEEEcCCCCCcE---EEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence 46999998864 6799999975322111 11123578887655556788999999999999999999876
|
| >1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-09 Score=67.14 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=52.8
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
...|....+.+|+.++|.|.+.+.+.+...+.|+++. ...........+.....+.......|.|.+++.+|+|.|.|
T Consensus 4 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C 83 (113)
T 1sq2_N 4 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC 83 (113)
T ss_dssp EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred EeCCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEE
Confidence 3446667899999999999997654223359999863 22111001112232222211223569999999999999999
Q ss_pred Eccc
Q psy13371 168 SPSN 171 (212)
Q Consensus 168 ~~~n 171 (212)
.+.+
T Consensus 84 ~~~~ 87 (113)
T 1sq2_N 84 GLGV 87 (113)
T ss_dssp EECB
T ss_pred EEEe
Confidence 9987
|
| >2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=67.48 Aligned_cols=82 Identities=18% Similarity=0.300 Sum_probs=52.2
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
...|....+.+|+.++|.|.+.+...+...+.|+++. ...........+.....+.......|.|.+++.+|+|.|.|
T Consensus 4 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C 83 (108)
T 2coq_A 4 DQTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKC 83 (108)
T ss_dssp EEECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred EeCCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEEEE
Confidence 3446667899999999999997543233459999863 21111111112222221111123569999999999999999
Q ss_pred Eccc
Q psy13371 168 SPSN 171 (212)
Q Consensus 168 ~~~n 171 (212)
.+.+
T Consensus 84 ~~~~ 87 (108)
T 2coq_A 84 KAYR 87 (108)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9876
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.01 E-value=6.9e-09 Score=71.82 Aligned_cols=91 Identities=22% Similarity=0.417 Sum_probs=63.6
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee-cCCEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL-KDSGK 164 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~ 164 (212)
+|.....+....+.+|+.+.|.|.+.+.|.+. +.|++++..+... ..........+. ...|.|.++.. +|+|.
T Consensus 6 pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~--v~W~~~~~~~~~~--~~~~~~~~~~~~--~~~L~i~~v~~~~d~G~ 79 (212)
T 2yd1_A 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPS--IVWRKNGKKVSGT--QSRYTVLEQPGG--ISILRIEPVRAGRDDAP 79 (212)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSSCCE--EEEEETTEECCTT--STTEEEEEETTT--EEEEEESSCCTTTTCSE
T ss_pred CCEEEcCCCceEEecCCEEEEEEEEccCCCCe--EEEEECCEECCCC--cceeEEEEcCCC--eEEEEEEecCCCCcCce
Confidence 45556667778899999999999998876664 9999999877411 111112222222 14599999999 99999
Q ss_pred EEEEcccCC----eeEEEEEEe
Q psy13371 165 YSCSPSNAD----VASVYVHVL 182 (212)
Q Consensus 165 y~C~~~n~~----~~~~~~~v~ 182 (212)
|+|.+.|.. ...+.+.|.
T Consensus 80 Y~C~~~n~~g~~~~~~~~l~V~ 101 (212)
T 2yd1_A 80 YECVAENGVGDAVSADATLTIY 101 (212)
T ss_dssp EEEEEECSSSCEEEEEEEEEEE
T ss_pred EEEEEEeCCCCeEEeeEEEEEe
Confidence 999999873 234445554
|
| >2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.8e-09 Score=66.07 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=59.4
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcc----eeeeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDI----HILTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP- 73 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~----~~~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~- 73 (212)
+.|.|.+.+.. ...+.|+|.... .++.... ......+|+.+..+...+..+|+|.+++.+|+|.|.|.+...+
T Consensus 20 vtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~~~ 99 (124)
T 2nms_A 20 LTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGN 99 (124)
T ss_dssp EEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred EEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCCC
Confidence 36899998753 347999997642 1111111 1112357999886667788999999999999999999998753
Q ss_pred ceeEEEEEEEeccc
Q psy13371 74 VRSFFVNLNVVVPT 87 (212)
Q Consensus 74 ~~~~~~~l~v~~~~ 87 (212)
.....+.|.|...+
T Consensus 100 ~~~~~v~L~V~~~~ 113 (124)
T 2nms_A 100 DLGVTVQVTIDPAP 113 (124)
T ss_dssp EEEEEEEEEEECCC
T ss_pred CccEEEEEEEeCCC
Confidence 23445666666543
|
| >3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-09 Score=68.19 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=58.2
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcc----eeeeecce--eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDI----HILTVGSY--TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~----~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.+.. ...+.|+|.... .+...... .....+||.+..+...+..+|+|.+++.+|+|.|.|.+.+..
T Consensus 19 vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~ 98 (129)
T 3rrq_A 19 ATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLA 98 (129)
T ss_dssp EEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEECG
T ss_pred EEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEecC
Confidence 46899998875 578999986431 11211111 111247999987667788999999999999999999998742
Q ss_pred -ce----eEEEEEEEecc
Q psy13371 74 -VR----SFFVNLNVVVP 86 (212)
Q Consensus 74 -~~----~~~~~l~v~~~ 86 (212)
.. +..+.|.|...
T Consensus 99 ~~~~~~~s~~~~L~V~~~ 116 (129)
T 3rrq_A 99 PKLQIKESLRAELRVTER 116 (129)
T ss_dssp GGCEEEECCCEEEEEECC
T ss_pred CCceeeEeceEEEEEecC
Confidence 22 34567777654
|
| >3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=5e-09 Score=65.71 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=52.6
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcce----eeeecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIH----ILTVGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~----~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.. ...+.|+|..... +..... .....++||++..+......+|+|.+++.+|+|.|.|.+.+.
T Consensus 17 vtL~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 95 (117)
T 3bp6_A 17 ATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISL 95 (117)
T ss_dssp EEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEEC
T ss_pred EEEEeEeecCCCCCEEEEEEeCCCCCceEEEEECCCCccccccCcEEEEEcCCCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 46899998764 5799999975321 111111 112236899998666778899999999999999999998764
|
| >3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-09 Score=67.33 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=53.6
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.+.|....+.+|+.++|.|...+...+...+.|+++ +.....-....++.....+.......|.|++++.+|+|.|.|
T Consensus 4 ~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C 83 (126)
T 3moq_A 4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKC 83 (126)
T ss_dssp EEECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred EECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEE
Confidence 345667789999999999999765323445999985 221111111112232222221224579999999999999999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+.+.
T Consensus 84 ~~~~~ 88 (126)
T 3moq_A 84 QAFYV 88 (126)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 98764
|
| >2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=67.48 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=55.2
Q ss_pred CeeEeeeCCCCC---ceEEEEeeCcc------eeeeecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLLP---TRVSWIRHRDI------HILTVGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p~---~~v~W~~~~~~------~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+.+. ..+.|+|.... .+....+ ......+|+.+..+...++.+|+|.+++.+|+|.|.|.+
T Consensus 12 v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v 91 (109)
T 2oyp_A 12 AYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRI 91 (109)
T ss_dssp EEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEE
T ss_pred EEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChhCeEEEEEE
Confidence 368999987653 35999996631 1111111 112235788776444556789999999999999999999
Q ss_pred cCCC-ceeEEEEEEEe
Q psy13371 70 STQP-VRSFFVNLNVV 84 (212)
Q Consensus 70 ~~~~-~~~~~~~l~v~ 84 (212)
.+.. .....+.|.|.
T Consensus 92 ~~~~~~~~~~~~l~V~ 107 (109)
T 2oyp_A 92 QFPGLMNDKKLELKLD 107 (109)
T ss_dssp CCSSTTCCEEEEEEEE
T ss_pred EcCCcccceEEEEEEE
Confidence 9853 34445555554
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.9e-10 Score=76.32 Aligned_cols=65 Identities=8% Similarity=0.005 Sum_probs=42.3
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|.|.|.|.|+++++....+.. .+.|+... ..+....+.|.+++.+|+|.|+|.+.|..
T Consensus 125 ~l~C~~~G~P~P~v~W~~~~~~~~~~~~-----~~~r~~~~--~~g~l~il~i~~v~~~D~G~YtC~A~N~~ 189 (203)
T 4fa8_A 125 TVTCTVNAFPHPHVQWLMPEGVEPAPTA-----ANGGVMKE--KDGSLSVAVDLSLPKPWHLPVTCVGKNDK 189 (203)
T ss_dssp EEEEEEEEESCCEEEECCC-----------------CCEEC--TTSCEEEEEEEEECSSCCCCEEEEEESSS
T ss_pred EEEEEcCCCCCCEEEEEECCeeecCccc-----ccceEEEe--CCCCEEEEEECCCCHHHCEEEEEEEEcCC
Confidence 6899999999999999987743222211 13455543 22233446678999999999999999974
|
| >1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ... | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-09 Score=67.42 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=50.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeeccee-eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSYT-YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+.+.+.|+|..... +....... ....+|+.+.. ..+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 19 v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 93 (120)
T 1mqk_L 19 VTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG--SGTQFSLKINSLLPEDFGSYYCQHHYG 93 (120)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred EEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEec--cCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence 369999999888999999975311 11111110 01246888763 456789999999999999999999875
|
| >3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=68.24 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=51.7
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+++. +.+.+.|+|........ .....++|+....+...+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 18 vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~---~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~ 88 (126)
T 3moq_A 18 LTINCVLRDASFELKDTGWYRTKLGSTNE---QSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYV 88 (126)
T ss_dssp EEEEEEEESCSSCCCEEEEEEEETTCCCC---EECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred EEEEEEeecCccCCceEEEEEeCCCCCce---EEEEeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEEEEEc
Confidence 3689999876 56789999965322111 112245799887666677899999999999999999998763
|
| >2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=68.33 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=50.8
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcc------eeeeecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDI------HILTVGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~------~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+ .+...+.|+|.... .+..... .....++|+.+..+...++.+|+|.+++.+|+|.|.|.+.+
T Consensus 15 v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~ 94 (116)
T 2or8_A 15 VTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEI 94 (116)
T ss_dssp EEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECC
T ss_pred EEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcccCEEEEEEEEc
Confidence 368999976 34678999997621 1111111 11234678887544455678999999999999999999988
Q ss_pred CC
Q psy13371 72 QP 73 (212)
Q Consensus 72 ~~ 73 (212)
.+
T Consensus 95 ~~ 96 (116)
T 2or8_A 95 PG 96 (116)
T ss_dssp SS
T ss_pred CC
Confidence 53
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A | Back alignment and structure |
|---|
Probab=98.98 E-value=6.8e-09 Score=65.08 Aligned_cols=89 Identities=17% Similarity=0.353 Sum_probs=57.2
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCC---------CceeEEeecCceEEEEEEEeeeeec
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR---------GGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+..+....+.+|++++|.|...+...+...+.|++++..+...... ..+.....+ ..|.|.+++.+
T Consensus 7 v~~~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-----~sL~I~~v~~~ 81 (117)
T 3q0h_A 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPG-----LGLTLQSLTVN 81 (117)
T ss_dssp EEESCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECST-----TCEEECSCCGG
T ss_pred EEccCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCc-----eEEEEeeCChh
Confidence 3445667899999999999997632233358999987654322111 112222222 24999999999
Q ss_pred CCEEEEEEccc-C---CeeEEEEEEee
Q psy13371 161 DSGKYSCSPSN-A---DVASVYVHVLN 183 (212)
Q Consensus 161 d~g~y~C~~~n-~---~~~~~~~~v~~ 183 (212)
|+|.|+|.+.+ + ....+.+.|+.
T Consensus 82 D~G~Y~C~v~~~~~g~~~~~~~L~V~~ 108 (117)
T 3q0h_A 82 DTGEYFCIYHTYPDGTYTGRIFLEVLE 108 (117)
T ss_dssp GCEEEEEEEEEETTCCEEEEEEEEEEC
T ss_pred hCEEEEEEEEECCCCCeEEEEEEEEEc
Confidence 99999999754 3 23445565554
|
| >2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=67.65 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=53.5
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeee--c-ce-eee--cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTV--G-SY-TYT--SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~--~-~~-~~~--~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+ .+.+.+.+.|+|..+..+... . .. ... ..+|+.+.. ++++|+|.+++.+|+|.|.|.+.+..
T Consensus 21 v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~----~~~sL~I~~v~~~DsG~Y~C~v~~~~ 96 (110)
T 2ptt_A 21 VTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE----NNGALHISNVRKEDKGTYYMRVLRET 96 (110)
T ss_dssp EEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECT----TTCCEEESSCCGGGCEEEEEEEESSS
T ss_pred EEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeC----CCccEEECCCCcccCeEEEEEEEcCC
Confidence 3689999 667778999999433222211 0 00 010 124777641 56689999999999999999998765
Q ss_pred ceeEEEEEEEec
Q psy13371 74 VRSFFVNLNVVV 85 (212)
Q Consensus 74 ~~~~~~~l~v~~ 85 (212)
.....+.|.|..
T Consensus 97 ~~~~~~~L~V~d 108 (110)
T 2ptt_A 97 ENELKITLEVFD 108 (110)
T ss_dssp BCCEEEEEEEEC
T ss_pred CcEEEEEEEEEc
Confidence 444566676653
|
| >1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=68.50 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=55.7
Q ss_pred CeeEeeeCCCCC----ceEEEEeeCcc------ee-eeecceee-----ecCCceEEEee-CCCCeEEEEEcccCCCCCE
Q psy13371 1 MLHQRKLKGLLP----TRVSWIRHRDI------HI-LTVGSYTY-----TSDQRFSAIHR-REGDEWTLHIKWAQKRDAG 63 (212)
Q Consensus 1 ~~l~C~~~~~p~----~~v~W~~~~~~------~~-~~~~~~~~-----~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G 63 (212)
+.|.|.+.+.+. +.+.|+|.+.. .+ ...+.... ...+|+.+..+ ...++.+|+|.+++.+|+|
T Consensus 23 v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G 102 (126)
T 1eaj_A 23 AYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIG 102 (126)
T ss_dssp EEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSCCGGGCE
T ss_pred EEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEEEECcCChHHCe
Confidence 368999987654 56999997632 11 11111111 12467777643 2345678999999999999
Q ss_pred EEEEEecCCC-ceeEEEEEEEec
Q psy13371 64 VYECQLSTQP-VRSFFVNLNVVV 85 (212)
Q Consensus 64 ~Y~C~~~~~~-~~~~~~~l~v~~ 85 (212)
.|+|.+.+.. .....+.|.|.+
T Consensus 103 ~Y~C~v~~~~~~~~~~~~L~V~~ 125 (126)
T 1eaj_A 103 TYQCKVKKAPGVANKKIHLVVLV 125 (126)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEEcCCccCCcEEEEEEEc
Confidence 9999998853 345566666653
|
| >1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-08 Score=64.58 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=52.5
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcce----eeeec-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIH----ILTVG-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~----~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+... ....+.|+|..... ++... .......+|+.+..+...+..+|+|.+++.+|+|.|.|.+...+
T Consensus 28 vtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~v~~~~ 107 (122)
T 1hkf_A 28 LTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPS 107 (122)
T ss_dssp EEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECTT
T ss_pred EEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCC
Confidence 3689999864 23689999976321 22111 11122358999876667788999999999999999999998753
|
| >3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-08 Score=65.88 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=52.1
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcce----eeeecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIH----ILTVGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~----~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.. ...+.|+|..... +..... ......+||.+..+......+|+|.+++.+|+|.|.|.+...
T Consensus 27 vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 105 (134)
T 3bik_B 27 ATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISL 105 (134)
T ss_dssp EEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred EEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEeC
Confidence 46899998764 5789999975321 111111 112236899987656777899999999999999999998764
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-09 Score=74.54 Aligned_cols=82 Identities=20% Similarity=0.371 Sum_probs=58.1
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
....+.+|+.+.|.|.+.+.|.+. +.|++++..+............... ..|.|.++..+|+|.|+|.+.|..
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~~n~~ 99 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMPT--MRWLKNGKEFKQEHRIGGYKVRNQH-----WSLIMESVVPSDKGNYTCVVENEY 99 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCCE--EEEEETTEECCGGGSTTCCEEEGGG-----TEEEECSCCGGGCEEEEEEEEETT
T ss_pred eeEEEccCCCEEEEEecccCCCCe--EEEEECCccccccccccceeeecCc-----ceEEEecCCcccCEEEEEEEeccc
Confidence 567789999999999999876665 9999999877433222111122222 249999999999999999999872
Q ss_pred ---eeEEEEEEe
Q psy13371 174 ---VASVYVHVL 182 (212)
Q Consensus 174 ---~~~~~~~v~ 182 (212)
.....+.|.
T Consensus 100 ~~~~~~~~l~V~ 111 (231)
T 3ojm_B 100 GSINHTYHLDVV 111 (231)
T ss_dssp EEEEEEEEEEEE
T ss_pred CcccccEEEEEE
Confidence 234444443
|
| >2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ... | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-09 Score=65.42 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=50.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeeccee-eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSYT-YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+.+.+.|+|..... +....... ...++|+.+.. .....+|+|.+++.+|+|.|.|.+.+.
T Consensus 21 v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 95 (109)
T 2q20_A 21 VTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSG--SGTDFTFTISSLQPEDIATYYCQQYDN 95 (109)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred EEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec--cCCEEEEEECCCChhhCEEEEEEEeeC
Confidence 369999999888999999976321 11111110 01246888763 456789999999999999999999874
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-08 Score=66.79 Aligned_cols=90 Identities=23% Similarity=0.319 Sum_probs=57.1
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeC----CCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDS----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
...+....+.+|+.++|.|.+.+.+.+. +.|++.+....... ....+....... .....|.|.+++.+|+|.|
T Consensus 42 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~--i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~v~~~DsG~Y 118 (145)
T 1z9m_A 42 QPWTSDETVVAGGTVVLKCQVKDHEDSS--LQWSNPAQQTLYFGEKRALRDNRIQLVTST-PHELSISISNVALADEGEY 118 (145)
T ss_dssp CCBCCCEEEETTSCEEEEEECSCCTTCC--EEEECTTCCEEEETTEECSCCTTEEEEEEC-SSEEEEEECSCCGGGCEEE
T ss_pred ecCCceEEEEcCCCEEEEEEEcCCCCcE--EEEECCCCcEEEECCceecccCCEEEecCC-CCeEEEEECCCChhhCEEE
Confidence 4456678899999999999998776555 99995432221110 011112111111 1134699999999999999
Q ss_pred EEEcccCC--eeEEEEEEe
Q psy13371 166 SCSPSNAD--VASVYVHVL 182 (212)
Q Consensus 166 ~C~~~n~~--~~~~~~~v~ 182 (212)
+|.+.|.. ...+.+.|.
T Consensus 119 ~C~~~n~~~~~~~~~L~V~ 137 (145)
T 1z9m_A 119 TCSIFTMPVRTAKSLVTVL 137 (145)
T ss_dssp EEEECSSSCEEEEEEEEEE
T ss_pred EEEEEcCCCceEEEEEEEE
Confidence 99999872 333444444
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-09 Score=67.06 Aligned_cols=86 Identities=20% Similarity=0.291 Sum_probs=53.1
Q ss_pred CeeEeee-CCCCCc----eEEEEeeCcceeee--ec--ceeeecCCceEEEeeCC-C--CeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKL-KGLLPT----RVSWIRHRDIHILT--VG--SYTYTSDQRFSAIHRRE-G--DEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~-~~~p~~----~v~W~~~~~~~~~~--~~--~~~~~~~~r~~~~~~~~-~--~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+ .+.+.+ .+.|+|.+...... .. .......+|+.+..+.. . ++.+|+|.+++.+|+|.|+|.
T Consensus 18 v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 97 (118)
T 3udw_C 18 VTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCL 97 (118)
T ss_dssp EEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChHHCeEEEEE
Confidence 3689999 444444 49999975321111 11 11111245666653221 1 277899999999999999999
Q ss_pred ecC-C-CceeEEEEEEEecc
Q psy13371 69 LST-Q-PVRSFFVNLNVVVP 86 (212)
Q Consensus 69 ~~~-~-~~~~~~~~l~v~~~ 86 (212)
+.+ . +.....+.|.|..+
T Consensus 98 v~~~~~~~~~~~~~L~V~~~ 117 (118)
T 3udw_C 98 FVTFPQGSRSVDIWLRVLAK 117 (118)
T ss_dssp EEEETTEEEEEEEEEEEEC-
T ss_pred EEECCCCCccceEEEEEEeC
Confidence 987 3 34556667777654
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=78.57 Aligned_cols=103 Identities=13% Similarity=0.184 Sum_probs=54.3
Q ss_pred CeeEeee---CCCCCceEEEEeeCcceeeeeccee---------eec----CCceEEEeeCCCCeEEEEEcccCCCCCEE
Q psy13371 1 MLHQRKL---KGLLPTRVSWIRHRDIHILTVGSYT---------YTS----DQRFSAIHRREGDEWTLHIKWAQKRDAGV 64 (212)
Q Consensus 1 ~~l~C~~---~~~p~~~v~W~~~~~~~~~~~~~~~---------~~~----~~r~~~~~~~~~~~~~L~i~~~~~~d~G~ 64 (212)
+.|.|.+ .+.|.+.+.|+++++.......... ... ..|..+..+....+..|.|.+++.+|+|.
T Consensus 136 v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~ 215 (268)
T 3mj6_A 136 TQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGI 215 (268)
T ss_dssp EEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEE
T ss_pred EEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeE
Confidence 3689999 6779999999996532111000000 001 12333332223456689999999999999
Q ss_pred EEEEecCC-CceeEEEEEEEec-ccceeeCCCceeeeCCCc
Q psy13371 65 YECQLSTQ-PVRSFFVNLNVVV-PTAEILGSPDLHVDEGST 103 (212)
Q Consensus 65 Y~C~~~~~-~~~~~~~~l~v~~-~~~~~~~~~~~~~~~g~~ 103 (212)
|+|.+.+. +.....+.|.|.. ++.....|....+..|+.
T Consensus 216 Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~p~~~~~~~~q~ 256 (268)
T 3mj6_A 216 YTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQG 256 (268)
T ss_dssp EEEEEEETTEEEEEEEEEEEECC------------------
T ss_pred EEEEEEcCCceEEEEEEEEEEcCCCeeeeCCCCCCCCccee
Confidence 99999985 3556667777744 333444444444444443
|
| >1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-09 Score=65.18 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=50.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeeccee-eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSYT-YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+.+.+.|+|..... +....... ....+|+.+.. ..+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 19 v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 93 (107)
T 1i8k_A 19 VTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG--TGTDFVFTIENTLSEDVGDYYCLQSFN 93 (107)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred EEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEc--cCCEEEEEECCCCHHHCEEEEEEEeeC
Confidence 369999999888899999975311 11111110 01246888763 456789999999999999999999875
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-09 Score=71.64 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=54.2
Q ss_pred CeeEeeeCCCC-CceEEEEe---eCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC-CCCCEEEEEEecCC-Cc
Q psy13371 1 MLHQRKLKGLL-PTRVSWIR---HRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQ-PV 74 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~-~~ 74 (212)
+.|.|.+.+.| .+.+.|++ ++. ...... .++|+.+.. ......|.|.+++ .+|+|.|+|.+.|. +.
T Consensus 101 ~~l~C~~~g~p~~~~i~W~~~~~~~~-~~~~~~-----~~~~~~~~~--~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~ 172 (184)
T 3b5h_A 101 AMLVCKSESVPPVTDWAWYKITDSED-KALMNG-----SESRFFVSS--SQGRSELHIENLNMEADPGQYRCNGTSSKGS 172 (184)
T ss_dssp EEEEEECCCSSCCCEEEEEECCSSSC-EECCTT-----GGGTEEEEE--ETTEEEEEECSCCTTTSSEEEEEEEEETTEE
T ss_pred EEEEEEECCCCCCCeEEEEEcCCCCC-EEeecC-----CCCEEEEEe--cCCeeEEEEeeccccccCceEEEEEEeCCCc
Confidence 36899999999 89999999 332 222111 135676652 3456789999999 89999999999986 44
Q ss_pred eeEEEEEEEe
Q psy13371 75 RSFFVNLNVV 84 (212)
Q Consensus 75 ~~~~~~l~v~ 84 (212)
....+.|.|.
T Consensus 173 ~~~~~~l~V~ 182 (184)
T 3b5h_A 173 DQAIITLRVR 182 (184)
T ss_dssp EEEEEEEEEC
T ss_pred ceEEEEEEEe
Confidence 5555666654
|
| >3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-08 Score=70.05 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=67.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--Cc
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PV 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~ 74 (212)
+.|.|.+.+. ...+.|+|..... +....... ...+|+.+..+......+|+|.+++.+|+|.|.|.+... ..
T Consensus 21 vtL~C~~s~~-~~~v~Wyrq~~g~~~~~l~~~~~~~-~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Cav~~~~~~~ 98 (205)
T 3qjh_A 21 SALRCNFTTT-MRAVQWFRKNSRGSLINLFYLASGT-KENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEASNTNK 98 (205)
T ss_dssp EEEEEECSSC-EEEEEEEEEC-CCCEEEEEEESSEE-EEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTTCC
T ss_pred EEEEEEEECC-cceEEEEEECCCCCcEEEEEECCCC-ccCCCEEEEEcCCCCEEEEEEeccccccCeEEEEEEEcCCCCc
Confidence 4699999887 6789999975321 11111111 236899988767778999999999999999999998732 11
Q ss_pred --eeEEEEEEEecc---c-ceeeCCCceeeeCCCcEEEEeEEeeCC
Q psy13371 75 --RSFFVNLNVVVP---T-AEILGSPDLHVDEGSTINLTCSIKYSP 114 (212)
Q Consensus 75 --~~~~~~l~v~~~---~-~~~~~~~~~~~~~g~~~~l~C~~~~~~ 114 (212)
.-....|.|... + +.+..+. .....++|.|.+.+..
T Consensus 99 ~~fG~GT~L~V~~~~~~~~p~V~~l~----~~~~~~tl~Cl~~~f~ 140 (205)
T 3qjh_A 99 VVFGTGTRLQVLPNIQNPDPAVYQLR----DSKSSDKSVCLFTDFD 140 (205)
T ss_dssp EEEBCCEEEEEECCCSSCCCEEEEEE----BCC--CCEEEEEESCC
T ss_pred cccCCCEEEEEeCcccCCCCEEEEec----ccCCCcEEEEEEEccc
Confidence 112245666532 1 2221111 1122478999998875
|
| >1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-09 Score=66.95 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=51.6
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcce----eeeec--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIH----ILTVG--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~----~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+. +.+.+.|+|..... +.... ......++|+.+..+...+..+|+|.+++.+|+|.|.|.+.+
T Consensus 18 vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 95 (116)
T 1fo0_A 18 VTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRG 95 (116)
T ss_dssp EEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEc
Confidence 3689999887 67799999975322 11111 111112579998755667788999999999999999999876
|
| >1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-09 Score=66.24 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=49.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+.+.+.|+|..... +..... ......+|+.+. ...+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 19 v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 93 (108)
T 1qfw_M 19 VTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGS--GSATDFTLTISSVQAEDFADYHCGQTYN 93 (108)
T ss_dssp EEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECC--BCSSEEEEEESSCCTTCCSEEEEEECSS
T ss_pred EEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEE--cCCCEEEEEECCCChhhCEEEEEEEccC
Confidence 369999999888899999975321 111111 000114677765 2456789999999999999999999875
|
| >2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-09 Score=67.45 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=50.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+.+.+.|+|..... +...... ....++|+.+.. ..+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 21 vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 95 (119)
T 2e27_L 21 VTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSG--SGRDYSFSISNLEPEDAATYYCLQYDN 95 (119)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEECGG
T ss_pred EEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc--cCCEEEEEECCCChHHCEEEEEEEccC
Confidence 369999999888999999975321 1111111 001246888763 456789999999999999999999874
|
| >2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ... | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-08 Score=61.75 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=52.0
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeC-----CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDS-----SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..|....+.+|+.++|.|.+.+.+.+. +.|+++. . .+.... ....+......+ ....|.|.+++.+
T Consensus 8 q~p~~~~v~~G~~v~L~C~~~~~~~~~--v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~--~~~~L~I~~v~~~ 83 (109)
T 2q20_A 8 QSPSSLSASVGDRVTITCQASQDISNY--LNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSG--TDFTFTISSLQPE 83 (109)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTC--EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGG
T ss_pred eeCCEEEecCCCcEEEEEeeccCCCCc--EEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccC--CEEEEEECCCChh
Confidence 445677899999999999997665454 9999864 2 121110 011222222211 1246999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+.+.
T Consensus 84 DsG~Y~C~~~~~ 95 (109)
T 2q20_A 84 DIATYYCQQYDN 95 (109)
T ss_dssp GCEEEEEEECSS
T ss_pred hCEEEEEEEeeC
Confidence 999999999874
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-09 Score=75.14 Aligned_cols=74 Identities=8% Similarity=0.108 Sum_probs=53.2
Q ss_pred CCceeeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 93 SPDLHVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
+....+.+|+.+.|.|.+.. .|.|. +.|++++.++... .+.....++......|.|.++..+|+|.|+|.|.|
T Consensus 9 ~~~~~v~eg~~v~l~c~~~~~~P~p~--i~W~kng~~l~~~----~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N 82 (207)
T 3rbs_A 9 ELAVEILEKGQVRFWMQAEKLSGNAK--VNYIFNEKEIFEG----PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD 82 (207)
T ss_dssp EEEEEECGGGCEEEEEECSCCCSCCE--EEEEETTEEECSS----SSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred CCceEEEeCCeEEEEEEEecCCCCCE--EEEEECCEECccC----CCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence 34567899999999999864 44454 9999999988422 22222222211224599999999999999999988
Q ss_pred C
Q psy13371 172 A 172 (212)
Q Consensus 172 ~ 172 (212)
.
T Consensus 83 g 83 (207)
T 3rbs_A 83 G 83 (207)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.1e-09 Score=70.73 Aligned_cols=77 Identities=22% Similarity=0.365 Sum_probs=56.8
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|.....+....+.+|+.+.|.|.+.+.|.+. +.|++++..+... ..+......+. .|.|.++..+|+|.|+
T Consensus 8 P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~--i~W~~~~~~~~~~---~~~~~~~~~~~----~L~i~~~~~~d~G~Y~ 78 (192)
T 2iep_A 8 PVITTPLETVDALVEEVATFMCAVESYPQPE--ISWTRNKILIKLF---DTRYSIRENGQ----LLTILSVEDSDDGIYC 78 (192)
T ss_dssp EEESSCCCEEEEETTSCEEEECCEEEESCCE--EEEEETTEECCTT---CTTEEEEGGGT----EEEESSCCGGGCEEEE
T ss_pred ceeecCccceeeeCCCcEEEEeeCCCCCCCe--EEEEECCEEcccc---CccEEEcCCcc----EEEEcCCCcccCeEEE
Confidence 3334445567789999999999998876665 9999999876321 12233333332 4999999999999999
Q ss_pred EEcccC
Q psy13371 167 CSPSNA 172 (212)
Q Consensus 167 C~~~n~ 172 (212)
|.+.|.
T Consensus 79 C~~~~~ 84 (192)
T 2iep_A 79 CTANNG 84 (192)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999986
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.1e-09 Score=73.39 Aligned_cols=83 Identities=22% Similarity=0.403 Sum_probs=58.5
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+....+.+|+.+.|.|.+.+.|.+. +.|++++..+................ .|.|.++..+|+|.|+|.+.|.
T Consensus 22 ~~~~~v~~G~~v~L~C~~~~~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~v~~~d~G~Y~C~~~~~ 94 (241)
T 3grw_A 22 KKLLAVPAANTVRFRCPAAGNPTPS--ISWLKNGREFRGEHRIGGIKLRHQQW-----SLVMESVVPSDRGNYTCVVENK 94 (241)
T ss_dssp CCEEEEETTSEEEEECCEECSSCCE--EEEEETTEECCGGGSTTCCEEEGGGT-----EEEECSCCGGGCEEEEEEEEET
T ss_pred CcceEEcCCCeEEEEEEecCCCCce--eEEEECCcccCCCCcccceeeeccce-----EEEEEeCCcccCEEEEEEEeec
Confidence 4457889999999999998876554 99999998874332222112222222 4999999999999999999987
Q ss_pred C---eeEEEEEEe
Q psy13371 173 D---VASVYVHVL 182 (212)
Q Consensus 173 ~---~~~~~~~v~ 182 (212)
. .....+.|.
T Consensus 95 ~~~~~~~~~l~V~ 107 (241)
T 3grw_A 95 FGSIRQTYTLDVL 107 (241)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CCceEEEEEEEEe
Confidence 2 334445443
|
| >4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-09 Score=67.94 Aligned_cols=85 Identities=21% Similarity=0.226 Sum_probs=52.6
Q ss_pred CeeEeeeCCCCC---ceEEEEeeCccee---eee--cceee----ecCCceEEEee-CCCCeEEEEEcccCCCCCEEEEE
Q psy13371 1 MLHQRKLKGLLP---TRVSWIRHRDIHI---LTV--GSYTY----TSDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYEC 67 (212)
Q Consensus 1 ~~l~C~~~~~p~---~~v~W~~~~~~~~---~~~--~~~~~----~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C 67 (212)
+.|+|.+.+.+. ..|.|+|...... ... ..... ...+|+.+... ...++++|+|.+++.+|+|.|.|
T Consensus 18 v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C 97 (123)
T 4gjt_B 18 AKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYEC 97 (123)
T ss_dssp EEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESCCSSSCSEEEE
T ss_pred EEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCCChHHCEEEEE
Confidence 369999987653 4689998653111 100 00000 11356666532 24467889999999999999999
Q ss_pred EecCC--CceeEEEEEEEec
Q psy13371 68 QLSTQ--PVRSFFVNLNVVV 85 (212)
Q Consensus 68 ~~~~~--~~~~~~~~l~v~~ 85 (212)
.+.+. +.....+.|+|.+
T Consensus 98 ~v~t~~~g~~~~~~~L~VlE 117 (123)
T 4gjt_B 98 RVSTFPAGSFQARLRLRVLE 117 (123)
T ss_dssp EEEESSSCEEEEEEEEEC--
T ss_pred EEEECCCCeEEeEEEEEEEE
Confidence 98763 3455566777654
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.6e-10 Score=69.66 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=45.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEE--EEcccCCCCCEEEEEEecCCC--cee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTL--HIKWAQKRDAGVYECQLSTQP--VRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L--~i~~~~~~d~G~Y~C~~~~~~--~~~ 76 (212)
+.|.|.+.|.|.|.+.|+|++. .+...... ...+.... .......+ .+.+++.+|+|.|+|.+.|.. ..+
T Consensus 27 v~L~C~~~g~P~p~v~W~k~~~--~~~~~~~~--~~~~~~~~--~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s 100 (117)
T 2v9t_A 27 ATLNCKAEGRPTPTIEWYKGGE--RVETDKDD--PRSHRMLL--PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100 (117)
T ss_dssp EEECCEEEEESCCEEEEEETTE--ECCCTTTC--SSCSEEEC--TTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEEC
T ss_pred EEEEEECCccCCCeEEEEECCE--eccccCCC--CcceeEEe--cCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEe
Confidence 3689999999999999999873 22211100 00111111 11222222 233778999999999999863 234
Q ss_pred EEEEEEEec
Q psy13371 77 FFVNLNVVV 85 (212)
Q Consensus 77 ~~~~l~v~~ 85 (212)
..+.+.+..
T Consensus 101 ~~~~l~~~~ 109 (117)
T 2v9t_A 101 HDASLEVAA 109 (117)
T ss_dssp CCEEEEEC-
T ss_pred eeEEEEhhh
Confidence 455565543
|
| >2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-08 Score=62.76 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=52.5
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeC-----CCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDS-----SRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
...|....+.+|+.++|.|.+.+.+.+. +.|+++. . .+.... ....+......+ ....|.|.+++.
T Consensus 7 ~q~p~~v~v~~G~~vtL~C~~~~~~~~~--v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~--~~~~L~I~~v~~ 82 (119)
T 2e27_L 7 TQSPSSLSASLGGKVTITCKANQDIKKK--IAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSG--RDYSFSISNLEP 82 (119)
T ss_dssp EEECSEEEEETTCCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET--TEEEEEECSCCG
T ss_pred EecCCeEEEeCCCCEEEEEEeCCCCCce--EEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccC--CEEEEEECCCCh
Confidence 3445667899999999999997665455 9999863 1 121110 011222222211 124699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+.+.
T Consensus 83 ~DsG~Y~C~~~~~ 95 (119)
T 2e27_L 83 EDAATYYCLQYDN 95 (119)
T ss_dssp GGCEEEEEEECGG
T ss_pred HHCEEEEEEEccC
Confidence 9999999999875
|
| >1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-09 Score=66.04 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=51.2
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcce----eeee-cceee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIH----ILTV-GSYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~----~~~~-~~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+... +.+.+.|+|..... +... +.... ...+|+.+..+...+..+|+|.+++.+|+|.|.|.+.+
T Consensus 18 vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 97 (116)
T 1tvd_A 18 VVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTL 97 (116)
T ss_dssp EEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccCChHHCEEEEEEEeC
Confidence 3689999765 56789999976321 1111 11111 12589998866566788999999999999999999986
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.9e-09 Score=72.34 Aligned_cols=77 Identities=30% Similarity=0.492 Sum_probs=57.4
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....|....+.+|+.+.|.|.+.+.|.+ ..+.|++++..+.... ..|.|.++..+|+|.|+|.
T Consensus 10 i~~~p~~~~v~~G~~v~L~C~~~~~p~~-~~v~W~k~g~~l~~~~----------------~~L~i~~v~~~D~G~Y~C~ 72 (204)
T 3sgj_C 10 VFLEPQWYRVLEKDSVTLKCQGAYSPED-QSTQWFHNESLISSQA----------------SSYFIDAATVDDSGEYRCQ 72 (204)
T ss_dssp EEEESCCSEEETTCCEEEEEECCSSSSC-CCEEEEETTEEESCCS----------------SEEEESSCCGGGCEEEEEE
T ss_pred EEEcCCCeEEECCCCEEEEEcCCCCCCC-cEEEEEECCEEcccCc----------------cEEEEecccccCCEEEEEE
Confidence 3344555788999999999999877543 2489999998773211 2499999999999999999
Q ss_pred cccC-CeeEEEEEEe
Q psy13371 169 PSNA-DVASVYVHVL 182 (212)
Q Consensus 169 ~~n~-~~~~~~~~v~ 182 (212)
+.|. ....+.+.|.
T Consensus 73 a~n~~~s~~~~l~V~ 87 (204)
T 3sgj_C 73 TQLSTLSDPVQLEVH 87 (204)
T ss_dssp ETTSBCCCCEEEEEE
T ss_pred eCCCcccccEEEEEe
Confidence 9986 4444555554
|
| >3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-10 Score=65.57 Aligned_cols=60 Identities=22% Similarity=0.421 Sum_probs=46.6
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeee-eecCCEEEEEEccc
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQA-ELKDSGKYSCSPSN 171 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~n 171 (212)
|....+..|+.++|.|.+.+.| . +.|++++..+... ..+ .|.|.++ ..+|+|.|+|.|.+
T Consensus 6 p~~~v~~~G~~v~L~C~~~g~P--~--i~W~kdg~~l~~~----------~~~-----~L~I~~v~~~~DsG~Y~C~A~t 66 (82)
T 3r08_E 6 IEYKVSISGTSVELTCPLDSDE--N--LKWEKNGQELPQK----------HDK-----HLVLQDFSEVEDSGYYVCYTPA 66 (82)
T ss_dssp CCCEEEEETTEEEEECSSCCCS--S--CEEEETTEECTTC----------CSS-----CCBCCSCCTTTTCSCEEEECSS
T ss_pred CceeEEEcCCeEEEEEECCCCC--c--EEEEECCEECcCC----------CCC-----EEEECccCccCcCEEEEEEEcc
Confidence 4555677899999999998775 3 8999999877311 112 3999996 77999999999975
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=74.54 Aligned_cols=84 Identities=25% Similarity=0.424 Sum_probs=58.1
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.....+....+.+|+.+.|.|.+.+.|.+. +.|++++..+........+. ....+ .....+.|.++..+|+|.|
T Consensus 9 ~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~--v~W~~~g~~~~~~~~~~~~~-~~~~~-~~~~~l~i~~v~~~d~G~Y 84 (217)
T 2vr9_A 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPT--IEWFKDGEPVSTNEKKSHRV-QFKDG-ALFFYRTMQGKKEQDGGEY 84 (217)
T ss_dssp CCEEEECCCCEEECTTSCEEECCEEECSSCCE--EEEEETTEECCCSSSSSSEE-ECTTS-CEEESSCCBSSSCBCCEEE
T ss_pred CCEEecCCCceEEeCCCcEEEEEEcCCCCCCe--EEEEECCcCccCCCccceeE-EecCC-ceEEEEEeccCCcccCceE
Confidence 44455566778899999999999998776555 99999998774332211111 12222 2222346788899999999
Q ss_pred EEEcccCC
Q psy13371 166 SCSPSNAD 173 (212)
Q Consensus 166 ~C~~~n~~ 173 (212)
+|.+.|..
T Consensus 85 ~C~~~n~~ 92 (217)
T 2vr9_A 85 WCVAKNRV 92 (217)
T ss_dssp EEEEEETT
T ss_pred EEEEecCC
Confidence 99999873
|
| >2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B | Back alignment and structure |
|---|
Probab=98.92 E-value=9e-09 Score=64.92 Aligned_cols=70 Identities=17% Similarity=0.332 Sum_probs=50.3
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce----eeeecc---e-ee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH----ILTVGS---Y-TY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~----~~~~~~---~-~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ ...+.|+|..... +..... . .. ...+|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 20 vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 99 (121)
T 2xt1_B 20 LRLSCAASGSFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNILYLQMNDLKPEDTAMYYCK 99 (121)
T ss_dssp EEEEEEEESSSCCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEecCeeccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEE
Confidence 46899998643 6789999975321 111111 1 11 12479999876667889999999999999999999
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
+.
T Consensus 100 ~~ 101 (121)
T 2xt1_B 100 AS 101 (121)
T ss_dssp ET
T ss_pred EE
Confidence 86
|
| >2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N | Back alignment and structure |
|---|
Probab=98.91 E-value=7.4e-09 Score=65.29 Aligned_cols=68 Identities=15% Similarity=0.266 Sum_probs=50.4
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+++. +.+.+.|+|........ .....++|+....+......+|+|.+++.+|+|.|.|.+..
T Consensus 18 vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~---~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~ 87 (121)
T 2i24_N 18 LTINCVVRDSRCVLSTGYWYRKPPGSRNE---ESISDGGRYVETVNRGSKSFSLRINDLTVKDSGTYRCKPES 87 (121)
T ss_dssp EEEEEEECSCCCCEEEEEEEEECTTCSCC---EEECSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEeEccCCCCCCCEEEEEEeCCCCCce---eeEecCCCeEEEecCCCCEEEEEECCCChhhCEEEEEEEec
Confidence 4699999876 35789999976422111 11224578887655666789999999999999999999863
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-09 Score=74.21 Aligned_cols=72 Identities=19% Similarity=0.330 Sum_probs=51.0
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+ .+.|.|.+.|++++.......... ....+..|.|.+++.+|+|.|+|.+.|. +..+..
T Consensus 139 v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~-------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~ 205 (214)
T 3jz7_A 139 FKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL-------------AEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCM 205 (214)
T ss_dssp EEEEEECSBCCSSCEEEEEECSTTCCCCGGGG-------------GGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred EEEEecCCCCCCCCEEEEEECCCCCccCccce-------------eccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEE
Confidence 3689999 899999999999654233221110 1112338999999999999999999996 455666
Q ss_pred EEEEEec
Q psy13371 79 VNLNVVV 85 (212)
Q Consensus 79 ~~l~v~~ 85 (212)
+.|.|..
T Consensus 206 ~~l~V~~ 212 (214)
T 3jz7_A 206 LRLDVVP 212 (214)
T ss_dssp EEECCBC
T ss_pred EEEEEeC
Confidence 6666653
|
| >2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.1e-09 Score=65.83 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=56.4
Q ss_pred CeeEeeeCCC--CCceEEEEeeCc------ceeeeecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRD------IHILTVGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~------~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.++.. ....+.|+|... ..+....+ ......+|+.+..+...++.+|+|.+++.+|+|.|.|.+.
T Consensus 15 v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~ 94 (115)
T 2or7_A 15 VTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVE 94 (115)
T ss_dssp EEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEEEC
T ss_pred EEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCHHHCEEEEEEEE
Confidence 3689998763 357899999751 12222211 1223457888764445667899999999999999999998
Q ss_pred CCC-ceeEEEEEEEec
Q psy13371 71 TQP-VRSFFVNLNVVV 85 (212)
Q Consensus 71 ~~~-~~~~~~~l~v~~ 85 (212)
..+ .....+.|.|..
T Consensus 95 ~~~~~~~~~v~L~V~~ 110 (115)
T 2or7_A 95 IPGAFHFVDYMLEVKP 110 (115)
T ss_dssp CTTSCEEEEEEEEEES
T ss_pred CCCceeEEEEEEEEcC
Confidence 753 234455555543
|
| >1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-09 Score=66.44 Aligned_cols=80 Identities=24% Similarity=0.415 Sum_probs=52.2
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE---EEeeCC---CCceeEEeecC-ceEEEEEEEeeeeec
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV---ISYDSS---RGGVSVITEKG-EVTTSYLLIQQAELK 160 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~---~~~~~~---~~~~~~~~~~~-~~~~~~l~i~~~~~~ 160 (212)
...|....+.+|+.++|.|.+.+.+ + .+.|+++. .. +..... ...+.....+. ......|.|.+++.+
T Consensus 5 ~q~p~~~~v~~G~~v~L~C~~~~~~-~--~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~ 81 (113)
T 1h5b_A 5 EQSPSALSLHEGTDSALRCNFTTTM-R--SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE 81 (113)
T ss_dssp EEECSEEEEETTCCEEEEEEESSCC-S--EEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred EECCCEEEEecCCcEEEEEEECCCC-c--eEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChh
Confidence 3446667899999999999997543 3 49999864 21 111110 01122222221 223456999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+.|.
T Consensus 82 DsG~Y~C~~~n~ 93 (113)
T 1h5b_A 82 DSGTYFCAAEAS 93 (113)
T ss_dssp GCEEEEEEEECS
T ss_pred hCEEEEEEEecC
Confidence 999999999885
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=72.09 Aligned_cols=80 Identities=26% Similarity=0.446 Sum_probs=56.8
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.....+....+.+|+.+.|.|.+.+.+.+ ..+.|++++..+... . ..|.|.+++.+|+|.|
T Consensus 4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~-~~i~W~~~~~~~~~~-----------~-----~~L~i~~v~~~d~G~Y 66 (176)
T 1f2q_A 4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEV-SSTKWFHNGSLSEET-----------N-----SSLNIVNAKFEDSGEY 66 (176)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC-----CCEEEETTEECSCC-----------S-----SEEEECSCCGGGCEEE
T ss_pred CCEEEcCCCCcceecCCcEEEEEeCCCCCCc-ceEEEEECCeECCCC-----------c-----eEEEEeccceecCEEE
Confidence 3444455666689999999999999877543 248999999876311 1 2499999999999999
Q ss_pred EEEcccC-CeeEEEEEEe
Q psy13371 166 SCSPSNA-DVASVYVHVL 182 (212)
Q Consensus 166 ~C~~~n~-~~~~~~~~v~ 182 (212)
+|.+.|. ....+.+.|.
T Consensus 67 ~C~~~~~~~s~~~~l~V~ 84 (176)
T 1f2q_A 67 KCQHQQVNESEPVYLEVF 84 (176)
T ss_dssp EEECTTSSCCCCEEEEEE
T ss_pred EEEcCCccccccEEEEEe
Confidence 9999986 3444555554
|
| >2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L | Back alignment and structure |
|---|
Probab=98.90 E-value=6.2e-09 Score=67.80 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=55.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCc-
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPV- 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~- 74 (212)
+.|.|.+.+.+.+.+.|+|..... +...... .....+||.+.. .....+|+|.+++.+|+|.|.|.+.+...
T Consensus 34 VtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~ 111 (146)
T 2yc1_B 34 ATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSG--SGTDFTLTISSLEPEDFAIYYCQQYRYSPR 111 (146)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECSSSSC
T ss_pred EEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEec--CCCEEEEEECCCCHHHCEEEEEEEecCCCC
Confidence 469999998888899999976321 1111111 001247888863 45678999999999999999999987532
Q ss_pred -eeEEEEEEEeccc
Q psy13371 75 -RSFFVNLNVVVPT 87 (212)
Q Consensus 75 -~~~~~~l~v~~~~ 87 (212)
......|.|..++
T Consensus 112 ~fg~GT~L~V~~~~ 125 (146)
T 2yc1_B 112 TFGQGTKVEIKRAA 125 (146)
T ss_dssp EECCCEEEEEC---
T ss_pred eECCCEEEEEeCCc
Confidence 1223456665544
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.2e-09 Score=69.93 Aligned_cols=77 Identities=30% Similarity=0.484 Sum_probs=56.9
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....+....+.+|+.+.|.|.+.+.|.+. .+.|++++..+... . ..|.|.++..+|+|.|+|.
T Consensus 10 i~~~p~~~~v~~G~~v~L~C~~~~~p~~~-~~~W~~~~~~~~~~-----------~-----~~L~i~~~~~~d~G~Y~C~ 72 (175)
T 1fnl_A 10 VFLEPQWYSVLEKDSVTLKCQGAYSPEDN-STQWFHNESLISSQ-----------A-----SSYFIDAATVNDSGEYRCQ 72 (175)
T ss_dssp EEEESCCSEEETTCCEEEEEECCCBTTBC-CCEEEETTEEEESS-----------C-----SEEEESSCCGGGCEEEEEE
T ss_pred EEEcCCceeeeCCCcEEEEeeCCCCCCCc-ceEEEECCEEccCC-----------c-----eEEEEeCCCcccCEEEEEE
Confidence 33445556889999999999998776443 36899999877411 1 2499999999999999999
Q ss_pred cccC-CeeEEEEEEe
Q psy13371 169 PSNA-DVASVYVHVL 182 (212)
Q Consensus 169 ~~n~-~~~~~~~~v~ 182 (212)
+.|. ....+.+.|.
T Consensus 73 ~~n~~~s~~~~l~V~ 87 (175)
T 1fnl_A 73 TNLSTLSDPVQLEVH 87 (175)
T ss_dssp CSSSCCCCCEEEEEE
T ss_pred eeCCcccccEEEEEe
Confidence 9986 3444455553
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-09 Score=83.34 Aligned_cols=85 Identities=26% Similarity=0.462 Sum_probs=57.6
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
...+....+.+|+.++|.|.+. |.|. +.|++++...........+.....++. |.|.+++.+|+|.|+|.|
T Consensus 356 ~~~~~~~~v~~G~~~~l~C~~~--p~p~--i~W~~~~~~~~~~~~~~~~~~~~~~g~-----L~i~~v~~~D~G~Y~C~a 426 (452)
T 3zyi_A 356 MDAPRDLNISEGRMAELKCRTP--PMSS--VKWLLPNGTVLSHASRHPRISVLNDGT-----LNFSHVLLSDTGVYTCMV 426 (452)
T ss_dssp SBCCCCEECCTTSCCEECCBCC--TTSE--EEEECTTSCEECSSCCCSSCEECTTSC-----EECSSCCTTCCEEEEEEE
T ss_pred ccccccccccCCCEEEEEEeCC--CCCc--EEEEeCCCcEeccCCCCCCEEECCCCe-----EEEeecCHHHCEEEEEEE
Confidence 3445667899999999999986 5555 999986554432222222333444443 999999999999999999
Q ss_pred ccCC---eeEEEEEEee
Q psy13371 170 SNAD---VASVYVHVLN 183 (212)
Q Consensus 170 ~n~~---~~~~~~~v~~ 183 (212)
.|.. ..++.+.|..
T Consensus 427 ~N~~G~~~~~~~l~v~~ 443 (452)
T 3zyi_A 427 TNVAGNSNASAYLNVST 443 (452)
T ss_dssp ECSSCEEEEEEEEEC--
T ss_pred EcCCCcEEEEEEEEEEc
Confidence 9983 3334444433
|
| >1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=8.4e-09 Score=65.05 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=51.3
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce----eeeecc--e-ee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH----ILTVGS--Y-TY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~----~~~~~~--~-~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+.+ .+.+.|+|..... +..... . .. ...+|+.+..+...+..+|+|.+++.+|+|.|.|.+
T Consensus 18 vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~ 97 (121)
T 1kxv_C 18 LRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKP 97 (121)
T ss_dssp EEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEEecCCCcCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHHHCEEEEEEE
Confidence 46999998653 5789999975321 111111 0 11 124799998766677899999999999999999998
Q ss_pred cCC
Q psy13371 70 STQ 72 (212)
Q Consensus 70 ~~~ 72 (212)
.+.
T Consensus 98 ~~~ 100 (121)
T 1kxv_C 98 SLR 100 (121)
T ss_dssp EES
T ss_pred Eec
Confidence 763
|
| >2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.9e-09 Score=65.52 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=50.0
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcce----eeee---cceeee---c-CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDIH----ILTV---GSYTYT---S-DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~~----~~~~---~~~~~~---~-~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++ +.+.+.+.|+|..... +... +..... . .+|+.+.. ..+..+|+|.+++.+|+|.|.|.
T Consensus 17 v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~~~~~DsG~Y~C~ 94 (111)
T 2qhl_A 17 VTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTV--NDQKFDLNIIGTREDDGGEYFCG 94 (111)
T ss_dssp EEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEE--SSSBEEEEESSCCGGGCEEEEEE
T ss_pred EEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEE--cCCeEEEEECCCChhHCEEEEEE
Confidence 36899998 7778899999975321 1211 111110 1 57888874 45678999999999999999999
Q ss_pred ecCC
Q psy13371 69 LSTQ 72 (212)
Q Consensus 69 ~~~~ 72 (212)
+.+.
T Consensus 95 ~~~~ 98 (111)
T 2qhl_A 95 EVEG 98 (111)
T ss_dssp EEET
T ss_pred EccC
Confidence 9864
|
| >1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A | Back alignment and structure |
|---|
Probab=98.90 E-value=6.8e-09 Score=64.43 Aligned_cols=70 Identities=23% Similarity=0.300 Sum_probs=50.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeeccee-eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSYT-YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.+.+.+.|+|..... +....... ....+|+.+.. ..+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 22 v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 96 (111)
T 1i3g_L 22 VSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSG--SGTDFTLTISNVQSEDLADYFCQQYSS 96 (111)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred EEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc--CCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 369999998888899999976421 11111110 01246888763 456789999999999999999999874
|
| >1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=98.89 E-value=7.8e-09 Score=62.14 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=51.2
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC--CceeE
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ--PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~ 77 (212)
+.|.|.+.+ .|.|.|+|.|.++....+.... ...+-+......-....|+|..+..+|+|.|+|.+.+. ...+.
T Consensus 32 ~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~---~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~g~ieSH 108 (122)
T 1xau_A 32 FKIECPVKYCVHRPNVTWCKHNGTIWVPLEVG---PQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSH 108 (122)
T ss_dssp EEEEEEEECSSSCCCEEEEEECSSSEEECCCB---TTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTEEEECC
T ss_pred EEEEeEecCCCCCCcEEEEecCCeeccccccc---eeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCCCceeee
Confidence 368999977 5899999999875333332110 01111222111224568999999999999999999984 23344
Q ss_pred EEEEEEe
Q psy13371 78 FVNLNVV 84 (212)
Q Consensus 78 ~~~l~v~ 84 (212)
...+.|.
T Consensus 109 s~ti~V~ 115 (122)
T 1xau_A 109 SVTIHVR 115 (122)
T ss_dssp CEEEEEC
T ss_pred EEEEEEE
Confidence 4445554
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=98.89 E-value=6e-09 Score=70.49 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=50.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.+.|.|.+.|++++.. +.. ....|.|.+++.+|+|.|+|.+.+. +..+..+
T Consensus 115 ~~l~C~~~~~p~~~v~W~~~~~~-~~~--------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~ 173 (184)
T 2ny1_B 115 LTLTLESPPGSSPSVQCRSPRGK-NIQ--------------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKI 173 (184)
T ss_dssp EEEEEECCTTCCCEEEEECTTSC-EEE--------------------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEcCCCCCCEEEEEeCCCc-ccc--------------------CceEEEEecCCcCCCeEEEEEEEECCceEEEEE
Confidence 36899999999999999987642 111 2237999999999999999999985 3455666
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|...|
T Consensus 174 ~l~V~~~p 181 (184)
T 2ny1_B 174 DIVVLAFQ 181 (184)
T ss_dssp EEEEECCC
T ss_pred EEEEEecC
Confidence 77776543
|
| >1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=62.51 Aligned_cols=78 Identities=14% Similarity=0.327 Sum_probs=51.7
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEeeC-----CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYDS-----SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..|....+.+|+.++|.|.+.+.+.+. +.|+++.. .+.... ....+......+ ....|.|.+++.+
T Consensus 6 q~p~~~~v~~G~~v~L~C~~~~~~~~~--v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~ 81 (108)
T 1qfw_M 6 QSPKSMSMSVGERVTLSCKASETVDSF--VSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSA--TDFTLTISSVQAE 81 (108)
T ss_dssp EECSCEECCTTCCEEEEEEESSCCCSC--EEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCS--SEEEEEESSCCTT
T ss_pred EeCCeEEEcCCCCEEEEeeeCCCCCcE--EEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCC--CEEEEEECCCChh
Confidence 345667899999999999997665444 99998641 121111 011122222111 2346999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+.+.
T Consensus 82 DsG~Y~C~~~~~ 93 (108)
T 1qfw_M 82 DFADYHCGQTYN 93 (108)
T ss_dssp CCSEEEEEECSS
T ss_pred hCEEEEEEEccC
Confidence 999999999875
|
| >2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6.6e-09 Score=64.39 Aligned_cols=80 Identities=15% Similarity=0.065 Sum_probs=51.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcc----eeeeec---ceeee---cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDI----HILTVG---SYTYT---SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~----~~~~~~---~~~~~---~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.....+.+.+.|+|.... .+.... ..... ..+|..+. .+++|.|.+++.+|+|.|+|.+.
T Consensus 18 v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~-----~ngSL~I~nvt~~D~G~Ytc~v~ 92 (111)
T 2qsq_A 18 VLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY-----PNASLLIQNIIQNDAGFYTLHVI 92 (111)
T ss_dssp EEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEEC-----TTSCEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEe-----cCCcEEEccCcccCCeEEEEEEE
Confidence 36888754444567999986521 111110 00111 24677776 45699999999999999999999
Q ss_pred CCC--ceeEEEEEEEec
Q psy13371 71 TQP--VRSFFVNLNVVV 85 (212)
Q Consensus 71 ~~~--~~~~~~~l~v~~ 85 (212)
+.. .....+.|.|..
T Consensus 93 ~~~~~~~~~~~~L~V~~ 109 (111)
T 2qsq_A 93 KSDLVNEEATGQFRVYP 109 (111)
T ss_dssp ETTSCCEEEEEEEEEEC
T ss_pred eCCCcEEEEEEEEEEec
Confidence 863 345566777653
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=98.88 E-value=7.9e-09 Score=72.79 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=52.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+.|.+.+.|+|++... +... .......++|+.+..+......+|+|.+++.+|+|.|+|.+.|.
T Consensus 145 v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 221 (238)
T 2p1y_A 145 AILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT 221 (238)
T ss_dssp EEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred EEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence 368999999999999999975311 1110 11111235688887555667789999999999999999999985
|
| >1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.1e-09 Score=67.53 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=49.3
Q ss_pred CeeEeeeC-------CCCCceEEEEeeCcce----eeeecce----eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLK-------GLLPTRVSWIRHRDIH----ILTVGSY----TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~-------~~p~~~v~W~~~~~~~----~~~~~~~----~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.+. +.+.+.+.|+|..... ++..... .....+|+.+..+...++.+|+|.+++.+|+|.|
T Consensus 24 v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y 103 (132)
T 1nko_A 24 VHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRY 103 (132)
T ss_dssp EEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceEEEEcccCcccCeeE
Confidence 46899997 3456899999976422 1211110 0112479988754455778999999999999999
Q ss_pred EEEecCCC
Q psy13371 66 ECQLSTQP 73 (212)
Q Consensus 66 ~C~~~~~~ 73 (212)
.|.+.+..
T Consensus 104 ~C~v~~~~ 111 (132)
T 1nko_A 104 FFRMEKGN 111 (132)
T ss_dssp EEEEEETT
T ss_pred EEEEEcCC
Confidence 99998753
|
| >2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-08 Score=64.16 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=51.2
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce----eeeecc---e-ee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH----ILTVGS---Y-TY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~----~~~~~~---~-~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ ...+.|+|..... +..... . .. ...+|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 18 vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 97 (117)
T 2yc1_A 18 LRLSCTGSGFTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTLSLQMNSLRAEDTAVYYCA 97 (117)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEecCcccCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEE
Confidence 46899998653 5789999976321 111110 0 11 12479999876667889999999999999999999
Q ss_pred ecCC
Q psy13371 69 LSTQ 72 (212)
Q Consensus 69 ~~~~ 72 (212)
+.+.
T Consensus 98 ~~~~ 101 (117)
T 2yc1_A 98 RGGV 101 (117)
T ss_dssp EEET
T ss_pred EEeC
Confidence 8763
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.5e-09 Score=78.45 Aligned_cols=71 Identities=17% Similarity=0.401 Sum_probs=53.1
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.+..+.+|+.+.|.|.+.+ |.|. +.|++++..+........+... .++ +|.|.+++.+|+|.|+|.|.|.
T Consensus 253 ~~~v~v~~G~~~~l~C~~~g-p~p~--i~W~~~~~~~~~~~~~~~r~~~-~~~-----~L~I~~v~~~D~G~Y~C~a~N~ 323 (361)
T 2xot_A 253 ESAWEAHLGDTLTIRCDTKQ-QGMT--KVWVSPSNEQVLSQGSNGSVSV-RNG-----DLFFKKVQVEDGGVYTCYAMGE 323 (361)
T ss_dssp CCCCEEETTCCEEECCCCSS-TTCE--EEEECTTSCBCCSCCSSSSEEE-ETT-----EEEESSCCTTSCEEEEEEEECS
T ss_pred ccCceecCCCeEEEEeEeeC-CCCe--EEEEeCCCeeEeecccCCceEe-ecC-----eEEEeecCcccCEEEEEEEecC
Confidence 45678999999999999987 6665 9999977654322222222333 333 3999999999999999999998
|
| >1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-08 Score=61.16 Aligned_cols=78 Identities=19% Similarity=0.349 Sum_probs=51.8
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeC-----CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDS-----SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..|....+.+|+.++|.|.+.+.+.+. +.|+++. . .+.... ....+......+ ....|.|.+++.+
T Consensus 6 q~p~~~~~~~G~~v~L~C~~~~~~~~~--v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~v~~~ 81 (107)
T 1i8k_A 6 QSPASLSVATGEKVTIRCMTSTDIDDD--MNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTG--TDFVFTIENTLSE 81 (107)
T ss_dssp EECSEEECCTTCCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET--TEEEEEESSCCGG
T ss_pred eCCCeEEecCCCCEEEEEEECCCCCCc--EEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccC--CEEEEEECCCCHH
Confidence 345667889999999999997665444 9999863 2 121110 011222222222 1246999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+.+.
T Consensus 82 DsG~Y~C~~~~~ 93 (107)
T 1i8k_A 82 DVGDYYCLQSFN 93 (107)
T ss_dssp GCEEEEEEECSS
T ss_pred HCEEEEEEEeeC
Confidence 999999999875
|
| >2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-08 Score=64.43 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=50.8
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcce----eeeecc---e-ee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIH----ILTVGS---Y-TY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~----~~~~~~---~-~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+. ....+.|+|..... +..... . .. ...+|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 20 vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 99 (123)
T 2p45_B 20 LRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDKGKNTVYLQMDSLKPEDTATYYCA 99 (123)
T ss_dssp EEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCTTSSEEEEEESSCCGGGCEEEEEE
T ss_pred EEEEEEecCccCcCcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEE
Confidence 4699999864 36789999976321 111110 0 11 12479999865566788999999999999999999
Q ss_pred ecCC
Q psy13371 69 LSTQ 72 (212)
Q Consensus 69 ~~~~ 72 (212)
+.+.
T Consensus 100 ~~~~ 103 (123)
T 2p45_B 100 AGGY 103 (123)
T ss_dssp ESSC
T ss_pred EEec
Confidence 8863
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-08 Score=68.16 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=55.6
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEE-cCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYH-HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
...|....+.+|+.+.|.|.+.+.+ +...+.|++ ++..+..... .......... ...|.|.++..+|+|.|+|.
T Consensus 6 ~~~p~~~~v~~G~~v~l~C~~~~~~-~~~~v~W~~~~g~~~~~~~~--~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~ 80 (191)
T 1epf_A 6 DIVPSQGEISVGESKFFLCQVAGDA-KDKDISWFSPNGEKLSPNQQ--RISVVWNDDD--SSTLTIYNANIDDAGIYKCV 80 (191)
T ss_dssp EEESSSEEEETTCCEEEEEEECCCS-CCCEEEEECTTSCEECCBSS--SEEEEEEETT--EEEEEECSCCGGGCEEEEEE
T ss_pred EecCCCcEEcCCCCEEEEEECCCCC-CCceEEEEeCCCccccCCCC--eEEEEECCCC--ceEEEEccCCcccCEEEEEE
Confidence 3455677899999999999998765 344599999 7776642211 1111111111 24699999999999999999
Q ss_pred cccCC
Q psy13371 169 PSNAD 173 (212)
Q Consensus 169 ~~n~~ 173 (212)
+.|..
T Consensus 81 ~~~~~ 85 (191)
T 1epf_A 81 VTAED 85 (191)
T ss_dssp EEETT
T ss_pred EEcCC
Confidence 99874
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.2e-09 Score=72.65 Aligned_cols=86 Identities=23% Similarity=0.397 Sum_probs=58.3
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCc-eeEEeecCceEEEEEEEeeeeecCCEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGG-VSVITEKGEVTTSYLLIQQAELKDSGK 164 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~ 164 (212)
+|.....+....+.+|+.+.|.|.+.+.|.+. +.|++++..+........ ......++......+.|.++..+|+|.
T Consensus 9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 86 (212)
T 2v9r_A 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT--IEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86 (212)
T ss_dssp EEEEEECCCCEEECTTCCEEECCEEEEESCCE--EEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred CcceecCCCceEEeCCCcEEEEEEcCCCCCCE--EEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence 44455567778899999999999998876665 999999987743322111 122223333222234556678999999
Q ss_pred EEEEcccCC
Q psy13371 165 YSCSPSNAD 173 (212)
Q Consensus 165 y~C~~~n~~ 173 (212)
|+|.+.|..
T Consensus 87 Y~C~~~n~~ 95 (212)
T 2v9r_A 87 YVCVARNYL 95 (212)
T ss_dssp EEEEEEETT
T ss_pred EEEEEECCC
Confidence 999999873
|
| >3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-08 Score=64.27 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=51.0
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce----eeeec---ceee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH----ILTVG---SYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~----~~~~~---~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.+ ...+.|+|..... +.... .... ...+|+.+..+...+..+|+|.+++.+|+|.|.|.
T Consensus 18 vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 97 (120)
T 3b9v_A 18 LRLSCAASGFNIKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCA 97 (120)
T ss_dssp EEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCCCCEEEEEECCCCHHHCEEEEEE
Confidence 36899998653 5789999976322 11111 1111 12479999876567788999999999999999999
Q ss_pred ecCC
Q psy13371 69 LSTQ 72 (212)
Q Consensus 69 ~~~~ 72 (212)
+.+.
T Consensus 98 ~~~~ 101 (120)
T 3b9v_A 98 RWGG 101 (120)
T ss_dssp EECT
T ss_pred EEcC
Confidence 8764
|
| >1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-08 Score=63.41 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=56.2
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcce----eeeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIH----ILTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~----~~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|...+.. ...+.|+|..... +..... ......+|+.+..+...+..+|+|.+++.+|+|.|.|.+...
T Consensus 18 vtL~C~~s~~~~~~~~~v~Wyrq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~ 97 (117)
T 1xed_A 18 VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGIN 97 (117)
T ss_dssp EEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCG
T ss_pred EEEEeEecCCcCCCCceEEEEEeCCCCCCEEEEEeCCeEcceEcCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEeC
Confidence 36899997652 4679999976421 111111 111235799988666778899999999999999999999875
Q ss_pred C-ceeEEEEEEEec
Q psy13371 73 P-VRSFFVNLNVVV 85 (212)
Q Consensus 73 ~-~~~~~~~l~v~~ 85 (212)
+ .......+.|.+
T Consensus 98 ~~~l~f~~~~~~~~ 111 (117)
T 1xed_A 98 SRGLSFDVSLEVLE 111 (117)
T ss_dssp GGCCEEEEEEEEEC
T ss_pred CCCeeEEEEEEEee
Confidence 3 234455555543
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-08 Score=79.52 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=61.8
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|.....+.+..+.+|+.+.+.|.+.+.|.|. +.|++++.++. .+.+.....++.. ..|.|+++..+|+|.|+
T Consensus 483 P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~--v~W~k~~~el~----~s~~~~i~~~~~~--~~L~I~~~~~~D~G~Yt 554 (573)
T 3uto_A 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPV--VTWHKDDRELK----QSVKYMKRYNGND--YGLTINRVKGDDKGEYT 554 (573)
T ss_dssp CEEEECCCCEEECTTSCEEEEEEEECSSCCE--EEEEETTEECC----SSSSEEEEEETTE--EEEEECSCCGGGCEEEE
T ss_pred CccccCCCCcEEeCCCcEEEEEEEEccCCCe--EEEEECCEEcc----cCCcEEEEEcCCE--EEEEEcCCCcccCcEEE
Confidence 3445556778899999999999999988887 99999998873 2233434444433 35999999999999999
Q ss_pred EEcccCC
Q psy13371 167 CSPSNAD 173 (212)
Q Consensus 167 C~~~n~~ 173 (212)
|.|.|..
T Consensus 555 ~~A~N~~ 561 (573)
T 3uto_A 555 VRAKNSY 561 (573)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999983
|
| >1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.3e-09 Score=64.36 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=50.6
Q ss_pred CeeEee-eCCCC-CceEEEEeeCccee--eeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRK-LKGLL-PTRVSWIRHRDIHI--LTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~-~~~~p-~~~v~W~~~~~~~~--~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|. +++.+ .+.+.|+|...... ..... ......+|+.+..+...+..+|+|.+++.+|+|.|.|.+.+.
T Consensus 18 v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 94 (109)
T 1pew_A 18 VTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDA 94 (109)
T ss_dssp EEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence 369999 87765 58999999762111 11111 000124799988666777889999999999999999999864
|
| >1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ... | Back alignment and structure |
|---|
Probab=98.87 E-value=3.4e-08 Score=62.13 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=52.0
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE---EEeeC-----CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV---ISYDS-----SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~---~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..|....+.+|+.++|.|.+.+.+.+. +.|+++. .. +.... ....+....... ....|.|.+++.+
T Consensus 6 q~p~~~~v~~G~~v~L~C~~~~~~~~~--v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~--~~~~L~I~~v~~~ 81 (120)
T 1mqk_L 6 QTPVSLSASVGETVTITCRASENIYSY--LAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSG--TQFSLKINSLLPE 81 (120)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCGG
T ss_pred ecCCeEEEcCCCcEEEEEEeCCCCCce--EEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccC--CEEEEEECCCCHH
Confidence 345667899999999999997665454 9999863 21 21110 011222222211 1246999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+.+.
T Consensus 82 DsG~Y~C~~~~~ 93 (120)
T 1mqk_L 82 DFGSYYCQHHYG 93 (120)
T ss_dssp GCEEEEEEECSS
T ss_pred HCEEEEEEEEeC
Confidence 999999999875
|
| >1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6e-09 Score=64.67 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=49.3
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcce----eeeeccee-eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIH----ILTVGSYT-YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~----~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+.+.+ .+.+.|+|..... +....... ....+|+.+.. ..+..+|+|.+++.+|+|.|.|.+.+
T Consensus 19 v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~ 96 (111)
T 1j05_L 19 ATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIIDPVEADDVATYYCQQTN 96 (111)
T ss_dssp EEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEc--cCCEEEEEECCCCcccCEEEEEEEec
Confidence 36999999877 5889999975311 11111110 01146888763 45678999999999999999999987
Q ss_pred C
Q psy13371 72 Q 72 (212)
Q Consensus 72 ~ 72 (212)
.
T Consensus 97 ~ 97 (111)
T 1j05_L 97 E 97 (111)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-08 Score=63.42 Aligned_cols=86 Identities=14% Similarity=0.200 Sum_probs=56.4
Q ss_pred CeeEeeeCC--CCCceEEEEeeC-cc-----eeeeecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKG--LLPTRVSWIRHR-DI-----HILTVGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~--~p~~~v~W~~~~-~~-----~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+.. .....+.|+|.. .. .+....+ .....++|+.+..+...++.+|+|.+++.+|+|.|.|.+.
T Consensus 14 vtL~C~~~~~~~~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~v~ 93 (116)
T 3bia_X 14 VTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIE 93 (116)
T ss_dssp EEECCBCTTCCTTTCEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEEeeCCCCCeEEEEEeeecCCCCCCceEEEEECCcccccccCceEEEeccCCCCEEEEEEccCChhHCEEEEEEEE
Confidence 368999873 345679999976 32 1222211 1223356888765456677899999999999999999997
Q ss_pred CCC---ceeEEEEEEEecc
Q psy13371 71 TQP---VRSFFVNLNVVVP 86 (212)
Q Consensus 71 ~~~---~~~~~~~l~v~~~ 86 (212)
..+ .....+.|.|..+
T Consensus 94 ~~~~~~~~~~~v~L~V~~~ 112 (116)
T 3bia_X 94 VPGWFNDVKKNVRLELRRA 112 (116)
T ss_dssp CSSSSCCEEEEEEEEEECC
T ss_pred cCCcccceEEEEEEEEecC
Confidence 643 2234556666543
|
| >2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-09 Score=65.39 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=50.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.+.+.+.+.+.|+|..... +..... ......+|+.+..+...+..+|+|.+++.+|+|.|.|.+.
T Consensus 18 v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~ 92 (112)
T 2z35_A 18 LTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALS 92 (112)
T ss_dssp EEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCSEEEEEEE
T ss_pred EEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEE
Confidence 368999988877899999976321 111110 0111257898875556678899999999999999999987
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 212 | ||||
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 5e-09 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 6e-09 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 1e-08 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 4e-08 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 1e-07 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 0.002 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 1e-07 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 2e-07 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 3e-07 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 4e-07 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 4e-07 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 5e-07 | |
| d1ncna_ | 110 | b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human | 8e-07 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 8e-07 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 8e-07 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 1e-06 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 2e-06 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 0.002 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 2e-06 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 2e-06 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 3e-06 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 3e-06 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 3e-06 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 5e-06 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 1e-05 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 1e-05 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 2e-05 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 2e-05 | |
| d1dr9a1 | 105 | b.1.1.1 (A:1-105) CD80, N-terminal domain {Human ( | 4e-05 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 4e-05 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 5e-05 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 5e-05 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 6e-05 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 7e-05 | |
| d1ogae2 | 127 | b.1.1.2 (E:119-245) T-cell antigen receptor {Human | 2e-04 | |
| d1ow0a2 | 108 | b.1.1.2 (A:343-450) Immunoglobulin heavy chain alp | 3e-04 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 3e-04 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 4e-04 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 5e-04 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 6e-04 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 0.001 | |
| d2nxyb1 | 97 | b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho | 0.001 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 0.001 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 0.002 | |
| d1q0xl2 | 102 | b.1.1.2 (L:108-212) Immunoglobulin light chain lam | 0.002 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 0.003 |
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 5e-09
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D V G ++ L + + W + I + + S L I
Sbjct: 9 DQKVRAGESVELFGKVTGTQPI--TCTWMKFRKQIQES------EHMKVENSENGSKLTI 60
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVL 182
A + G Y+ N A V + V+
Sbjct: 61 LAARQEHCGCYTLLVENKLGSRQAQVNLTVV 91
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 49.8 bits (118), Expect = 6e-09
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQ 156
V +T+ C +P P + W + + + GG V L+++
Sbjct: 16 AVPAANTVKFRCPAGGNPMP--TMRWLKNGKEFKQEHRIGGYKVRN-----QHWSLIMES 68
Query: 157 AELKDSGKYSCSPSNA---DVASVYVHVL 182
D G Y+C N + ++ V+
Sbjct: 69 VVPSDKGNYTCVVENEYGSINHTYHLDVV 97
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 48.6 bits (115), Expect = 1e-08
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
+ V +G + + C + P P + W H+ + +S + VT S L
Sbjct: 10 EKVIVVKQGQDVTIPCKVTGLPAP--NVVWSHNAKPLSGG-----------RATVTDSGL 56
Query: 153 LIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+I+ + D G Y C +N V V
Sbjct: 57 VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 4e-08
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 92 GSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTS 150
G+P L V +G + L CS++ EP +
Sbjct: 1 GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYI------PVSEQHWIG 54
Query: 151 YLLIQQAELKDSGKYSCSPSN----ADVASVYVHV 181
+L ++ E D+G+Y C + V++ V
Sbjct: 55 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 46.5 bits (109), Expect = 1e-07
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT-------EKGEV 147
+ G + C + +P +I W H E G+ + +
Sbjct: 14 NASTVVGGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 71
Query: 148 TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
L I+ +D+G+Y+C N+ S ++ VL
Sbjct: 72 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 34.6 bits (78), Expect = 0.002
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 6 KLKGLLPTRVSWIRHRDIH--ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG 63
K+ + WI+H + + Y + + ++ + + L+I+ DAG
Sbjct: 28 KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAG 87
Query: 64 VYECQLS-TQPVRSFFVNLNVV 84
Y C + + L V+
Sbjct: 88 EYTCLAGNSIGISFHSAWLTVL 109
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 1e-07
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 3/100 (3%)
Query: 85 VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144
VP ++ + G+ LTCS + P Y ++ + + S S +
Sbjct: 1 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
TT L+ D+G+YSC N + S V +
Sbjct: 61 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (107), Expect = 2e-07
Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 94 PDLHVDEGSTINLTC---SIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTS 150
+ + ++ C S+ P P+ + ++ + V
Sbjct: 5 ASVQLHTAVEMHHWCIPFSVDGQP-APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 151 YLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
L + Q ++G Y+ +N AS+ +
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.4 bits (106), Expect = 3e-07
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 85 VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV-ITE 143
VP ++ S V G+ LTCS P Y ++ +++ D+ + + +
Sbjct: 1 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ + L+ DSG+Y C N + S H+
Sbjct: 61 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.5 bits (104), Expect = 4e-07
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V EG + N C + S P + S ++ L I
Sbjct: 10 GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK--------YMKRYNGNDYGLTI 61
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ + D G+Y+ N+ V+++V
Sbjct: 62 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 91
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 44.5 bits (104), Expect = 4e-07
Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 12/96 (12%)
Query: 90 ILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT 148
IL P + V EG + +C P P +
Sbjct: 2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST--------SARHQVTTTKY 53
Query: 149 TSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
S I + D G YS N+ A + +
Sbjct: 54 KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 89
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 44.0 bits (103), Expect = 5e-07
Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 17/99 (17%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
P+ + D + G + L C +P P + + SS
Sbjct: 5 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP--------- 55
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
L IQ + +D G Y C N D + +
Sbjct: 56 -----LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 8e-07
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 19 RHRDIHILTVGSYTYTS-DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSF 77
+ ++ + +G + S ++ + D WTL + Q +D G+Y+C + +
Sbjct: 37 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM 96
Query: 78 FVNLNVVV 85
+
Sbjct: 97 IRIHQMNS 104
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 8e-07
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 8/104 (7%)
Query: 86 PTAEILGSP-DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144
P + P D V G +I + + + + + + + S G + +
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 145 GEVT----TSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ L I A+ +G Y C S D ++ + V
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.7 bits (102), Expect = 8e-07
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
+ + G ++ L C PEP + W E I + + ++ S L
Sbjct: 12 IVNATANLGQSVTLVCDADGFPEP--TMSWTKDGEPIENEEEDDEKHIFSDDS----SEL 65
Query: 153 LIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
I+ + D +Y C N AS+++ V
Sbjct: 66 TIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 98
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 1e-06
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 24/112 (21%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFW---------------YHHDEVISYDSSRGGVS 139
+ V G+ + L I P P D S +
Sbjct: 18 TIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKL 77
Query: 140 VITEKGEV------TTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHVL 182
+ +G V S ++ AE +D G Y+ + N D ++ V V+
Sbjct: 78 LCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 2e-06
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 85 VPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144
P E+ L G ++ LTC + + S+ S
Sbjct: 6 CPAQEV-ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRW--------- 55
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSNADVASVYVHV 181
LL++ +L DSG YSC + +V++ V
Sbjct: 56 -AGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLV 91
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.1 bits (77), Expect = 0.002
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 30 SYTYTSDQRFSAIHRR--EGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNLNV 83
+ + + + H G L ++ Q D+G Y C + +P + + ++V
Sbjct: 38 TVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDV 93
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 2e-06
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT----TS 150
V G I +K + + + S G + E E T
Sbjct: 9 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 68
Query: 151 YLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ I +A+ +G Y C + D S + V
Sbjct: 69 EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 102
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 42.6 bits (99), Expect = 2e-06
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D+ V EGS C ++ P+P F + S + E L I
Sbjct: 17 DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH-------FQIDYDEEGNCSLTI 69
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ D KY+C N+ + + V
Sbjct: 70 SEVCGDDDAKYTCKAVNSLGEATCTAELLV 99
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 3e-06
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D G + L C + + F + + S + E L+I
Sbjct: 9 DTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRY------RIRVEGKKHILII 61
Query: 155 QQAELKDSGKYSCSPSNADVASVYVHV 181
+ A D+ +YS + +S + V
Sbjct: 62 EGATKADAAEYSVMTTG-GQSSAKLSV 87
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 3e-06
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSY 151
H++EG T L C + P + ++ D + + +
Sbjct: 8 VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSEL 67
Query: 152 LLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ D G+Y C+ +++ D A + + V
Sbjct: 68 HIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 41.8 bits (97), Expect = 3e-06
Identities = 20/90 (22%), Positives = 26/90 (28%), Gaps = 15/90 (16%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
D D GS + +C P P EV+ L
Sbjct: 10 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI------------EVSGGELRF 57
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ L+DSG Y C N AS + V
Sbjct: 58 SKLVLEDSGMYQCVAENKHGTVYASAELTV 87
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 41.8 bits (97), Expect = 5e-06
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 10/90 (11%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
V +GS + + P+P + S + E L+I
Sbjct: 13 SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDR-------IYWYWPEDNVCELVI 65
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
+ +DS N + ++ V
Sbjct: 66 RDVTGEDSASIMVKAINIAGETSSHAFLLV 95
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 1e-05
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ + G L C +KY P ++ W + S E+ ++ L
Sbjct: 12 EHSILAGDPFELECPVKYCANRP-HVTWCKLNGTTCVKLEDRQTSWK-EEKNISFFILHF 69
Query: 155 QQAELKDSGKYSCSPSN----ADVASVYVHVL 182
+ D+G Y CS + + S ++V
Sbjct: 70 EPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 1e-05
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
P V +G I LT + + A + W + + I S+ + L
Sbjct: 13 EPAYQVSKGHKIRLTVELA---DHDAEVKWLKNGQEIQMSGSK-----YIFESIGAKRTL 64
Query: 153 LIQQAELKDSGKYSCSPSNADVASVYVHV 181
I Q L D Y C + S + V
Sbjct: 65 TISQCSLADDAAYQCVVGG-EKCSTELFV 92
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.9 bits (92), Expect = 2e-05
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 12/90 (13%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
EG + C + S P D ++ D ++ +YL I
Sbjct: 10 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD---------VRFIVLSNNYLQI 60
Query: 155 QQAELKDSGKYSCSPSN---ADVASVYVHV 181
+ + D G Y C ++ + V
Sbjct: 61 RGIKKTDEGTYRCEGRILARGEINFKDIQV 90
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 2e-05
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
P++ + E + + L+C+ P + D + + ++ + +
Sbjct: 11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGI 70
Query: 153 LIQQAELKDSGKYSCSPSNA-----DVASVYVHVL 182
+ +D+G Y+C S V + VL
Sbjct: 71 TFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 4e-05
Identities = 10/68 (14%), Positives = 24/68 (35%)
Query: 12 PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71
TR+ W + + + + + + + + ++ I + D G YEC +
Sbjct: 27 QTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLK 86
Query: 72 QPVRSFFV 79
+F
Sbjct: 87 YEKDAFKR 94
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 4e-05
Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 8/95 (8%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRG----GVSVITEKGEVT 148
S ++ + P + W + ++ + +
Sbjct: 2 SQQIYGVVYGNVTFHVPSN---VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTV 58
Query: 149 TSYLLIQQAELKDSGKYSCSPSN-ADVASVYVHVL 182
+ L I D +Y N D +++VL
Sbjct: 59 SGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVL 93
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 5e-05
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 6/112 (5%)
Query: 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSV 140
L V P I + H G + C I+ +P P I W + V+ +S
Sbjct: 2 LTVNGPP-IISSTQTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKENVLESGTSGRYTVE 59
Query: 141 ITEKGEVTTSYLLIQQAELK-DSGKYSCSPSNA---DVASVYVHVLNGEYTG 188
E S L I Y+C+ N+ D + + E +G
Sbjct: 60 TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG 111
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 5e-05
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 5/79 (6%)
Query: 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLL 153
++ V+ G CS ++ D + S +
Sbjct: 9 QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRF-----IASFN 63
Query: 154 IQQAELKDSGKYSCSPSNA 172
+ +D+GKY C
Sbjct: 64 VVNTTKRDAGKYRCMIRTE 82
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.9 bits (89), Expect = 6e-05
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
D+ V E +I LTC+ P + + + ++ ++S +
Sbjct: 8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGI 67
Query: 153 LIQQAELKDSGKYSCSPSNA-----DVASVYVHVL 182
KD+G+Y+C S S+++ VL
Sbjct: 68 TFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 38.3 bits (88), Expect = 7e-05
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 10/94 (10%)
Query: 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYL 152
S D+ G + C +P F D + + T + L
Sbjct: 10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRI------TRHNRTSGKRL 63
Query: 153 LIQQAELKDSGKYSCSPSN----ADVASVYVHVL 182
L + +D G Y+C N S+ + V+
Sbjct: 64 LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Score = 37.4 bits (86), Expect = 2e-04
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 6/92 (6%)
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
NV P + + + L C + W+ + + + S +
Sbjct: 1 NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLK 60
Query: 142 TEKGE-----VTTSYLLIQQAELKDSG-KYSC 167
+ +S L + ++ + C
Sbjct: 61 EQPALNDSRYSLSSRLRVSATFWQNPRNHFRC 92
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 3e-04
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 82 NVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI 141
N P +L P + + LTC + + W + + + S
Sbjct: 1 NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQ 60
Query: 142 TEKGEVTT----SYLLIQQAELKDSGKYSC 167
TT S L + + K +SC
Sbjct: 61 EPSQGTTTFAVTSILRVAAEDWKKGDTFSC 90
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.5 bits (83), Expect = 3e-04
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG 145
+ V G+ + C+ K ++ H+ + +
Sbjct: 2 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNG------------KLPSRA 49
Query: 146 EVTTSYLLIQQAELKDSGKYSCSPSNA---DVASVYVHV 181
L I+ + D+G Y C+ SN D + +HV
Sbjct: 50 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.9 bits (84), Expect = 4e-04
Identities = 13/76 (17%), Positives = 18/76 (23%), Gaps = 2/76 (2%)
Query: 17 WIRHRDIHILTVGSYTYTSDQRFSAIHRREGDE-WTLHIKWAQKRDAGVYECQLSTQP-V 74
+ R + G+ L I+ + D G Y C
Sbjct: 47 VVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQ 106
Query: 75 RSFFVNLNVVVPTAEI 90
V L V P I
Sbjct: 107 EEAAVELKVEDPFYWI 122
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (82), Expect = 5e-04
Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 10/88 (11%)
Query: 85 VPTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
P L G + L C ++ P + ++ + +
Sbjct: 3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKRE---------PA 53
Query: 144 KGEVTTSYLLIQQAELKDSGKYSCSPSN 171
GE + ++SC
Sbjct: 54 VGEPAEVTTTVLVRRDHHGAQFSCRTEL 81
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.7 bits (81), Expect = 6e-04
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ + G T NL +P+P A ++ + + + +T+ +
Sbjct: 11 KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE--------LLVDAKSSTTSIFF 62
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHV 181
A+ DSG Y N D A V V
Sbjct: 63 PSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 35.4 bits (80), Expect = 0.001
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
+ EG L C + + P + IT + + ++
Sbjct: 11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV 70
Query: 155 QQAELKDSGKYSCSPSNA---DVASVYVHVLNG 184
+ ++ D KY C+ NA + + + + G
Sbjct: 71 TKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKG 103
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.8 bits (79), Expect = 0.001
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 9/81 (11%)
Query: 100 EGSTINLTCSIKYSP--------EPPAYIFWYHHDEVISYDSS-RGGVSVITEKGEVTTS 150
+G T+ LTC+ I + S +
Sbjct: 8 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 67
Query: 151 YLLIQQAELKDSGKYSCSPSN 171
L+I+ +++DS Y C +
Sbjct: 68 PLIIKNLKIEDSDTYICEVED 88
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.0 bits (79), Expect = 0.001
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 5/87 (5%)
Query: 86 PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEK 144
P IL V G + + C + P +F + +E + Y++
Sbjct: 2 PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYET----FGKAAPA 57
Query: 145 GEVTTSYLLIQQAELKDSGKYSCSPSN 171
+ T+ +SC
Sbjct: 58 PQEATATFNSTADREDGHRNFSCLAVL 84
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 34.3 bits (77), Expect = 0.002
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 8/78 (10%)
Query: 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLI 154
++ E + L C I+ + + Y + + L+
Sbjct: 11 EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE--------HNAALRKDEGSLVF 62
Query: 155 QQAELKDSGKYSCSPSNA 172
+ + D G Y C
Sbjct: 63 LRPQASDEGHYQCFAETP 80
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.3 bits (78), Expect = 0.002
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 1/84 (1%)
Query: 84 VVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE 143
PT + P + L C+I + W ++ S +
Sbjct: 4 SSPTVTLF-PPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSN 62
Query: 144 KGEVTTSYLLIQQAELKDSGKYSC 167
+ +SYL + + YSC
Sbjct: 63 NKYMASSYLTLTARAWERHSSYSC 86
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 33.7 bits (76), Expect = 0.003
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 94 PDLHVDEGS---TINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTS 150
EGS + LTC + +P + + DS V
Sbjct: 12 AHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY---------RLVAGD 62
Query: 151 YLLIQQAELKDSGKYSCSPSNA 172
++ + KD+G Y C +NA
Sbjct: 63 LVISNPVKAKDAGSYQCVATNA 84
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 212 | |||
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.54 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.53 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.52 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.51 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.5 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.49 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.49 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.48 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.48 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.46 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.46 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.45 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.45 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.45 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.45 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.45 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.44 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.44 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.43 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.43 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.42 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.42 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.42 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.41 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.41 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.41 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.41 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.41 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.4 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.4 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.39 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.39 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.38 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.38 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.37 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.37 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.37 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.37 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.36 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.36 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.36 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.35 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.35 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.35 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.35 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.35 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.34 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.34 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.33 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.33 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.32 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.32 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.31 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.3 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.3 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.3 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.3 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.29 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.29 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.29 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.28 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.28 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.27 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.27 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.26 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.26 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.26 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.25 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.25 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.24 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.24 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.24 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.24 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.24 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.24 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.23 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.23 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.23 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.23 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.21 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.21 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.2 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.2 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.2 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.19 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.19 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.19 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.19 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.18 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.18 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.17 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.16 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.15 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.14 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.14 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.12 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.11 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 99.1 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 99.1 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.1 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.1 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.07 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 99.06 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.05 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 99.04 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.04 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 99.03 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.01 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.01 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 99.0 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.99 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.99 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.94 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 98.93 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.92 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 98.89 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.89 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.84 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.83 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 98.81 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.81 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.8 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.8 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.79 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 98.79 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.79 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.79 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.78 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.77 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 98.76 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.75 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 98.75 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 98.74 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.74 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 98.73 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.73 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.73 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 98.72 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.72 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.72 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.72 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.71 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.71 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.71 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.71 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.71 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 98.71 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.7 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.7 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.7 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.7 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.7 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 98.68 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 98.68 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.68 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 98.68 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.68 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 98.68 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.67 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.67 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.67 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.67 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 98.66 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.66 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.66 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.66 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.66 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.66 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.65 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.65 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.65 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.65 | |
| d1rzga1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.64 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.64 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.64 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.64 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.64 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.64 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.64 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 98.63 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 98.63 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.63 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 98.63 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.62 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.62 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 98.62 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.62 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.62 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 98.62 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.62 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.62 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.62 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.62 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.62 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.61 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 98.61 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.61 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 98.6 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.6 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.6 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.6 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.6 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.59 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.59 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 98.59 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.59 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.59 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 98.59 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 98.59 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.57 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.57 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.57 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.56 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.56 | |
| d1fn4b1 | 116 | Immunoglobulin heavy chain variable domain, VH {Ra | 98.56 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 98.56 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.56 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.56 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.56 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.55 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 98.55 | |
| d3cx5j1 | 127 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.55 | |
| d1b2wh1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 98.54 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.54 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.54 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 98.53 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.53 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.52 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.52 | |
| d3c2ah1 | 131 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.52 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 98.51 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.51 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.51 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 98.51 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.51 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.51 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.51 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.5 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.5 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.5 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.5 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.5 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.49 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 98.49 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.48 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.47 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.47 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.47 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 98.47 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.47 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 98.46 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.46 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.46 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.46 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.45 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.45 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.45 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.45 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 98.45 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.45 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 98.45 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.45 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 98.45 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.44 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 98.44 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.44 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.44 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.44 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 98.43 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 98.43 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.43 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.43 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.43 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.42 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 98.42 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.42 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.42 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.42 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.42 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.41 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 98.41 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.41 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.41 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.41 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.4 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.4 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.4 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 98.4 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 98.4 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.4 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.4 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.39 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 98.39 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.39 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.39 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.39 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.39 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.39 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.39 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 98.38 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.38 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 98.38 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 98.38 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.38 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.38 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.37 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.37 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.37 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.37 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.37 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.37 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.37 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.37 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 98.36 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 98.36 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.36 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.36 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 98.35 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.35 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 98.35 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.35 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.35 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.35 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 98.35 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.35 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 98.34 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.34 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 98.34 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.34 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.34 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 98.34 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.33 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.33 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.33 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 98.33 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.32 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.32 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.32 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 98.32 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.32 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.32 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.32 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 98.32 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 98.31 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.31 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 98.31 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.31 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.31 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 98.3 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.3 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.3 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 98.3 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.29 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.29 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 98.29 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 98.29 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.29 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.29 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 98.28 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.28 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 98.28 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.28 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.28 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.27 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.27 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.27 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 98.27 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 98.27 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 98.27 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.27 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 98.26 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 98.25 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.25 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 98.25 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 98.25 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 98.24 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.24 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.24 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.24 | |
| d1rzga1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.24 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.23 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 98.23 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.23 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 98.23 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.22 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 98.22 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.22 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 98.22 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 98.21 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 98.21 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.21 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.21 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.2 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 98.2 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.19 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.18 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 98.18 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.18 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.17 | |
| d3c2ah1 | 131 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.17 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.17 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.16 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.16 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 98.16 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 98.15 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 98.15 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.14 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 98.14 | |
| d3cx5j1 | 127 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.14 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 98.13 | |
| d1dn0b2 | 105 | Immunoglobulin heavy chain mu constant domain 1, C | 98.13 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 98.11 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 98.11 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 98.11 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 98.1 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.1 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 98.1 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.08 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 98.08 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 98.07 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 98.06 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.05 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 98.05 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.04 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.04 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 98.04 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 98.04 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.03 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 98.02 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 98.02 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 98.01 | |
| d1ogae2 | 127 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.01 | |
| d1b2wh1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 98.01 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 98.0 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 98.0 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 97.99 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 97.98 | |
| d1c5cl2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.97 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.96 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.92 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.91 | |
| d1nfde2 | 104 | Immunoglobulin light chain lambda constant domain, | 97.9 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 97.89 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.88 | |
| d1fn4b1 | 116 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.88 | |
| d1u58a1 | 98 | Immunomodulatory protein m144, alpha-3 domain {Mur | 97.88 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.87 | |
| d1kcvh2 | 101 | Immunoglobulin heavy chain gamma constant domain 1 | 97.87 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 97.84 | |
| d1mjuh2 | 102 | Immunoglobulin heavy chain gamma constant domain 1 | 97.84 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.83 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.81 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.79 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 97.78 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 97.76 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.73 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.72 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.7 | |
| d2fbjh2 | 102 | Immunoglobulin heavy chain alpha constant domain 1 | 97.7 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.68 | |
| d1i1ca1 | 103 | Immunoglobulin heavy chain gamma constant domain 2 | 97.62 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.6 | |
| d1jbja2 | 100 | CD3 epsilon chain ectodomain fragment {Mouse (Mus | 97.6 | |
| d1igtb3 | 119 | Immunoglobulin heavy chain gamma constant domain 2 | 97.58 | |
| d2fbjh2 | 102 | Immunoglobulin heavy chain alpha constant domain 1 | 97.53 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 97.53 | |
| d1hxma2 | 86 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.5 | |
| d1c5ch2 | 103 | Immunoglobulin heavy chain gamma constant domain 1 | 97.41 | |
| d1fp5a1 | 103 | Immunoglobulin heavy chain epsilon constant domain | 97.41 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 97.39 | |
| d1l6xa1 | 105 | Immunoglobulin heavy chain gamma constant domain 2 | 97.36 | |
| d1xiwa_ | 91 | CD3 epsilon chain ectodomain fragment {Human (Homo | 97.35 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.34 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 97.23 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 97.23 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 97.18 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 97.18 | |
| d1hnfa1 | 101 | CD2, first domain {Human (Homo sapiens) [TaxId: 96 | 97.17 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.12 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 97.11 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 97.11 | |
| d1ow0a1 | 101 | Immunoglobulin heavy chain alpha constant domain 2 | 97.11 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 97.04 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.02 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.01 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 97.0 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 97.0 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 96.99 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 96.97 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 96.96 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 96.94 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 96.92 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 96.86 |
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.54 E-value=1.4e-14 Score=86.74 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=60.4
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|.++..|.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+.... +......+. ...|.|.++..+|+|.|+
T Consensus 2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~--v~W~~~~~~l~~~~----~~~~~~~~~--~~~L~I~~~~~~D~G~Y~ 73 (97)
T d1koaa1 2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSV----KYMKRYNGN--DYGLTINRVKGDDKGEYT 73 (97)
T ss_dssp CEEEECCCCCEEETTSCEEEEEEEECSSCCE--EEEEETTEECCSBT----TBBCCCSTT--EEEEEESCCCSGGGSCEE
T ss_pred CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCE--EEEEEeeeccceee----EEEEEecCC--eeEEEeCCCceecCEEEE
Confidence 3455567778899999999999999887776 99999999874321 222222332 245999999999999999
Q ss_pred EEcccCC
Q psy13371 167 CSPSNAD 173 (212)
Q Consensus 167 C~~~n~~ 173 (212)
|.|.|..
T Consensus 74 C~a~N~~ 80 (97)
T d1koaa1 74 VRAKNSY 80 (97)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999983
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=7.9e-14 Score=84.04 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=63.3
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
+..+.+..+..|+.+.|.|.+.+.|.|. +.|++++..+... .+........ .+.|.|.++..+|+|.|+|.|
T Consensus 4 ~~~p~~~~v~~G~~~~l~C~v~g~p~p~--v~W~k~~~~l~~~----~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a 75 (101)
T d2cqva1 4 IQFPEDQKVRAGESVELFGKVTGTQPIT--CTWMKFRKQIQES----EHMKVENSEN--GSKLTILAARQEHCGCYTLLV 75 (101)
T ss_dssp SCCCCSEEEETTCCEEEEEEEESSSSCE--EEEEESSSBCCCS----SSEEEEECSS--EEEEEETTCCTTTCEEEEEEE
T ss_pred EeeCCcEEEeCCCcEEEEEEEEecCCCE--EEEEeCceeeccC----CcEEEEEecc--eeEEEEeeCCcccCEEEEEEE
Confidence 3456678899999999999999887666 9999999887322 2222222222 246999999999999999999
Q ss_pred ccCC---eeEEEEEEeec
Q psy13371 170 SNAD---VASVYVHVLNG 184 (212)
Q Consensus 170 ~n~~---~~~~~~~v~~~ 184 (212)
.|.. ..++.+.|...
T Consensus 76 ~N~~G~~~~~~~l~V~~~ 93 (101)
T d2cqva1 76 ENKLGSRQAQVNLTVVDK 93 (101)
T ss_dssp ECSSCEEECCEEEEEECS
T ss_pred EECCCEEEEEEEEEEEec
Confidence 9983 34445555543
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=8e-14 Score=82.37 Aligned_cols=75 Identities=24% Similarity=0.459 Sum_probs=58.3
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+. ...............+.|.|.+++.+|+|.|+|.|.|.
T Consensus 3 P~~~~v~~G~~~~l~C~v~g~p~p~--v~W~k~g~~l~----~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 76 (91)
T d1rhfa1 3 PVKLTVSQGQPVKLNCSVEGMEEPD--IQWVKDGAVVQ----NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDG 76 (91)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSCC--EEEEETTEECC----SSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSC
T ss_pred CeeEEEcCCCeEEEEEEEEecCCce--EEEEEeecccc----cceeeeeeecccCceeeEEECCCCcccCEEEEEEEEEC
Confidence 5567899999999999999888777 99999998873 22222333333334456999999999999999999997
Q ss_pred C
Q psy13371 173 D 173 (212)
Q Consensus 173 ~ 173 (212)
.
T Consensus 77 ~ 77 (91)
T d1rhfa1 77 G 77 (91)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.52 E-value=7.7e-14 Score=81.97 Aligned_cols=76 Identities=22% Similarity=0.373 Sum_probs=59.5
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|.++..+.+..+..|+.+.|.|.+.+.|.|. +.|++++.++.. ..+... ..+ .|.|.++..+|+|.|+
T Consensus 2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~--v~W~k~g~~i~~----~~~~~~-~~~-----~L~i~~v~~~D~G~Y~ 69 (89)
T d1cs6a4 2 PDWLDVITDTEADIGSDLRWSCVASGKPRPA--VRWLRDGQPLAS----QNRIEV-SGG-----ELRFSKLVLEDSGMYQ 69 (89)
T ss_dssp EEEEECCCCEEEETTCCEEEECEEEEESCCE--EEEEETTEECCC----CSSEEE-ETT-----EEEESSCCGGGCEEEE
T ss_pred CCeEEECCCEEECCCCcEEEEEEEEEEcCCE--EEEEEeeccccc----cceeee-eee-----eEEEEeecccCCEEEE
Confidence 3455667788899999999999999988776 999999988742 122222 222 4999999999999999
Q ss_pred EEcccCCe
Q psy13371 167 CSPSNADV 174 (212)
Q Consensus 167 C~~~n~~~ 174 (212)
|.|.|..+
T Consensus 70 C~a~N~~G 77 (89)
T d1cs6a4 70 CVAENKHG 77 (89)
T ss_dssp EEEEETTE
T ss_pred EEEEeCCC
Confidence 99999843
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.51 E-value=2.3e-13 Score=81.48 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=62.0
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+|.++..+.+..+.+|+.+.|.|.+.+.|.|. +.|++++.++... .........+.. ..|.|.++..+|.|.|
T Consensus 4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~--v~W~k~~~~i~~~---~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y 76 (98)
T d1g1ca_ 4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPE--CEWYKNGVKIERS---DRIYWYWPEDNV--CELVIRDVTGEDSASI 76 (98)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCE--EEEEETTEECCCC---SSEEEEEEETTE--EEEEECSCCGGGCEEE
T ss_pred CCeEecCCCcEEEcCCCcEEEEEEEEEecCCe--EEEEeCceEEeee---eeeEEEeccceE--EEEEeccCccccCEEE
Confidence 44556667788899999999999999987776 9999999887422 112222222222 4599999999999999
Q ss_pred EEEcccCCe
Q psy13371 166 SCSPSNADV 174 (212)
Q Consensus 166 ~C~~~n~~~ 174 (212)
+|.|.|..+
T Consensus 77 ~c~a~N~~G 85 (98)
T d1g1ca_ 77 MVKAINIAG 85 (98)
T ss_dssp EEEEEETTE
T ss_pred EEEEEECCc
Confidence 999999843
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.50 E-value=1.7e-13 Score=82.75 Aligned_cols=80 Identities=24% Similarity=0.388 Sum_probs=60.6
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|.+...+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+... ........+. ...+|.|.++..+|.|.|+
T Consensus 9 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~--v~W~k~~~~i~~~----~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~ 81 (102)
T d1fhga_ 9 PYFTKTILDMEVVEGSAARFDCKVEGYPDPE--VMWFKDDNPVKES----RHFQIDYDEE-GNCSLTISEVCGDDDAKYT 81 (102)
T ss_dssp EEEEECCCCEEEETTSCEEEEEEEEEESCCE--EEEEETTEECCCS----SSEEEEECTT-CEEEEEESSCCGGGCEEEE
T ss_pred CeEEcCCCcEEEecCCcEEEEEEEEeccCCe--EEEEeeeccccce----eeEeEEEecC-ceeeeEecCCCHHhCEEEE
Confidence 4455567778899999999999999987776 9999999987422 2222222221 1246999999999999999
Q ss_pred EEcccCC
Q psy13371 167 CSPSNAD 173 (212)
Q Consensus 167 C~~~n~~ 173 (212)
|.|.|..
T Consensus 82 C~a~N~~ 88 (102)
T d1fhga_ 82 CKAVNSL 88 (102)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999984
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.3e-13 Score=83.04 Aligned_cols=76 Identities=22% Similarity=0.329 Sum_probs=59.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.+.+.|+|++. .+.. ++++.+. ...+...|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 18 ~~l~C~v~g~p~p~v~W~k~~~-~l~~--------~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 86 (101)
T d2cqva1 18 VELFGKVTGTQPITCTWMKFRK-QIQE--------SEHMKVE--NSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQV 86 (101)
T ss_dssp EEEEEEEESSSSCEEEEEESSS-BCCC--------SSSEEEE--ECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCE
T ss_pred EEEEEEEEecCCCEEEEEeCce-eecc--------CCcEEEE--EecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEE
Confidence 3689999999999999999874 2222 3456554 3445678999999999999999999996 5667778
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|...|
T Consensus 87 ~l~V~~~P 94 (101)
T d2cqva1 87 NLTVVDKP 94 (101)
T ss_dssp EEEEECSC
T ss_pred EEEEEecC
Confidence 88887654
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=1.4e-13 Score=82.77 Aligned_cols=81 Identities=23% Similarity=0.461 Sum_probs=57.6
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC--
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD-- 173 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-- 173 (212)
..+..|+.+.|.|.+.+.|.|. +.|++++..+................ +.|.|.++..+|+|.|+|.|.|..
T Consensus 15 ~t~~~G~~v~l~C~~~g~P~p~--i~W~~~g~~i~~~~~~~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~ 88 (100)
T d1qz1a3 15 ATANLGQSVTLVCDADGFPEPT--MSWTKDGEPIENEEEDDEKHIFSDDS----SELTIRNVDKNDEAEYVCIAENKAGE 88 (100)
T ss_dssp EETTSCCCEEEEEEEEEESCCE--EEEEETTEECCCC--CCSSEEECTTS----CEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred EEEcCCCCEEEEEEEEEecCCE--EEEEeCCcccccccccceeEEeecCc----eEEEeCCCCcccCEEEEEEEEECCCE
Confidence 3567899999999999988776 99999998875433222222222222 359999999999999999999983
Q ss_pred -eeEEEEEEe
Q psy13371 174 -VASVYVHVL 182 (212)
Q Consensus 174 -~~~~~~~v~ 182 (212)
...+.+.|+
T Consensus 89 ~~~~~~l~V~ 98 (100)
T d1qz1a3 89 QDASIHLKVF 98 (100)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 333445443
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.49 E-value=1.8e-13 Score=80.39 Aligned_cols=73 Identities=23% Similarity=0.494 Sum_probs=56.0
Q ss_pred eeeCCCc-eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 89 EILGSPD-LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 89 ~~~~~~~-~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
+...|.. ..+.+|+.+.|.|.+.+.|.|. +.|++++.++. . .+.... ++ .|.|.++..+|+|.|+|
T Consensus 5 f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~--v~W~~~~~~i~----~-~~~~~~-~~-----~L~i~~v~~~d~G~Y~C 71 (89)
T d1biha4 5 YEQKPEKVIVVKQGQDVTIPCKVTGLPAPN--VVWSHNAKPLS----G-GRATVT-DS-----GLVIKGVKNGDKGYYGC 71 (89)
T ss_dssp EEECCCSEEEECTTSCEEEECEEEEESCCC--CEEEETTEECC----S-SSEEEE-TT-----EEEESSCCSTTCEEEEE
T ss_pred EEECCCCCEEEeCCCeEEEEEEEEEeCCCE--EEEEeCCccCc----c-ccEEEe-ee-----eEEECCCChhhCEEEEE
Confidence 3444443 5678999999999999998887 99999998873 1 122222 22 39999999999999999
Q ss_pred EcccCCe
Q psy13371 168 SPSNADV 174 (212)
Q Consensus 168 ~~~n~~~ 174 (212)
.|.|..+
T Consensus 72 ~a~N~~G 78 (89)
T d1biha4 72 RATNEHG 78 (89)
T ss_dssp EEEETTE
T ss_pred EEEECCC
Confidence 9999843
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.48 E-value=9.2e-14 Score=82.43 Aligned_cols=79 Identities=20% Similarity=0.305 Sum_probs=59.4
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
|.....+.+..+..|+.+.|.|.+.+.|.|. +.|++++..+.... +......+.. ..|.|.++..+|+|.|+
T Consensus 3 P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~--v~W~~~~~~i~~~~----~~~~~~~~~~--~~L~I~~~~~~D~G~Y~ 74 (93)
T d1wiua_ 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPT--ATWTVGDSGAALAP----ELLVDAKSST--TSIFFPSAKRADSGNYK 74 (93)
T ss_dssp CEECCCCCEEEECSSBCCEEEEEEECCSSCE--EEEECSSSSCBCST----TSEEEEETTE--EEEECTTBCGGGCEEEE
T ss_pred CeEEeCCCcEEEeCCCeEEEEEEEEEecCCe--EEEEeeeeeceeee----eeeecccccc--eeeccccccccccEEEE
Confidence 3344456678899999999999999988776 99999998774322 1222222222 45999999999999999
Q ss_pred EEcccCC
Q psy13371 167 CSPSNAD 173 (212)
Q Consensus 167 C~~~n~~ 173 (212)
|.|.|..
T Consensus 75 c~a~N~~ 81 (93)
T d1wiua_ 75 LKVKNEL 81 (93)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999983
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.48 E-value=8.9e-14 Score=83.14 Aligned_cols=71 Identities=21% Similarity=0.439 Sum_probs=54.3
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+..|+.+.|.|.+.+.|.|. +.|++++.++............... ++|.|.++..+|+|.|+|.|.|..
T Consensus 15 ~~v~~G~~v~l~C~~~g~P~p~--i~W~kng~~l~~~~~~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~~ 85 (97)
T d3dara1 15 HAVPAANTVKFRCPAGGNPMPT--MRWLKNGKEFKQEHRIGGYKVRNQH-----WSLIMESVVPSDKGNYTCVVENEY 85 (97)
T ss_dssp EEECTTCCEEEECCEEEESCCE--EEEEETTEECCGGGSTTCCEEEGGG-----TEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEECCCCcEEEEEEEeEECCCE--EEEEECCEeccccCceeeEEEcCCc-----EEEEECCCCcccCEEEEEEEEECC
Confidence 4578899999999999988776 9999999988544322211111122 249999999999999999999984
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.7e-13 Score=80.99 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=60.7
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....+....+.+|+.+.|.|.+.+.+. ...+.|++++..+.. ..+......+ +|.|.++..+|+|.|+|.
T Consensus 9 ~~~~~~~v~~~~G~~v~L~C~~~g~~~-~~~i~W~k~~~~l~~----~~~~~~~~~~-----~L~I~~v~~~D~G~Y~C~ 78 (93)
T d1n26a1 9 QEVARGVLTSLPGDSVTLTCPGVEPED-NATVHWVLRKPAAGS----HPSRWAGMGR-----RLLLRSVQLHDSGNYSCY 78 (93)
T ss_dssp CCCCTTEEEECTTCCEEEECTTSCTTC-CSEEEEEEECSSSSC----CCEEEEEESS-----EEEECSCCGGGCEEEEEE
T ss_pred EEeCCCCEEEeCCCcEEEEEEeecCCC-CceEEEEEccccccc----eeeEEecCCC-----EEEECCCChhcCEEEEEE
Confidence 334455677889999999999987653 335999999987631 2233333333 499999999999999999
Q ss_pred cccCCeeEEEEEE
Q psy13371 169 PSNADVASVYVHV 181 (212)
Q Consensus 169 ~~n~~~~~~~~~v 181 (212)
+.|....++.+.|
T Consensus 79 a~n~~~~t~~l~V 91 (93)
T d1n26a1 79 RAGRPAGTVHLLV 91 (93)
T ss_dssp SSSSCSCEEEEEE
T ss_pred ECCccccEEEEEE
Confidence 9998666666654
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.46 E-value=1.9e-13 Score=81.70 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=55.6
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+.+..+..|+.+.|.|.+.+.|.|. +.|++++..+....... ....... ..+.|.|.++..+|+|.|+|.|.|.
T Consensus 10 ~~~~~~~~G~~v~l~C~~~g~P~~~--v~W~k~g~~i~~~~~~~--~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~ 83 (97)
T d1biha3 10 SKDMMAKAGDVTMIYCMYGSNPMGY--PNYFKNGKDVNGNPEDR--ITRHNRT--SGKRLLFKTTLPEDEGVYTCEVDNG 83 (97)
T ss_dssp CCSEEEETTSCEEEEEEEECSSCCC--CEEEETTEECCCCTTSS--EESCSSS--TTSEEEESSCCGGGCEEEEEEECCS
T ss_pred CCCEEEecCCeEEEEEEEEEecCCE--EEEEEeeeeccccceee--eeeeeec--CCCEEEEEeccccccEEEEEEEEEC
Confidence 4677899999999999999887776 99999999875332211 1111111 1135999999999999999999998
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.45 E-value=1.4e-13 Score=81.33 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=55.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++++. .+.. +.++.+. .......|.|.++..+|+|.|.|.+.|. +..+..+
T Consensus 17 ~~l~C~~~g~P~p~v~W~~~g~-~l~~--------~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 85 (91)
T d1tnna_ 17 ARFSCDTDGEPVPTVTWLRKGQ-VLST--------SARHQVT--TTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEF 85 (91)
T ss_dssp CCEEEECCCSSCCCCEEESSSS-TTCS--------SSSCEEE--ECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEE
T ss_pred EEEEEEEEEEeCCeEEEEEeec-cccc--------ccceeee--eecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEE
Confidence 4689999999999999999873 3322 3344444 3446778999999999999999999986 4556666
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 86 ~l~V~ 90 (91)
T d1tnna_ 86 TLTIQ 90 (91)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 66653
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.45 E-value=9.4e-14 Score=82.03 Aligned_cols=75 Identities=23% Similarity=0.417 Sum_probs=57.6
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
+..|.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+.... ......... .+.|.|.++..+|+|.|+|.|
T Consensus 3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~--v~W~~~g~~l~~~~----~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a 74 (91)
T d1tnna_ 3 LTKPRSMTVYEGESARFSCDTDGEPVPT--VTWLRKGQVLSTSA----RHQVTTTKY--KSTFEISSVQASDEGNYSVVV 74 (91)
T ss_dssp SBCCCCEECSSSSCCCEEEECCCSSCCC--CEEESSSSTTCSSS----SCEEEECSS--EEEEECSSCCSCCCEEEEEEC
T ss_pred EeCCcCEEEeCCCcEEEEEEEEEEeCCe--EEEEEeeccccccc----ceeeeeecc--eeEEeecCCCHHHCEEEEEEE
Confidence 3456778899999999999999988777 99999998773221 122222222 246999999999999999999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.|.
T Consensus 75 ~N~ 77 (91)
T d1tnna_ 75 ENS 77 (91)
T ss_dssp BCS
T ss_pred EEC
Confidence 998
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.5e-13 Score=78.93 Aligned_cols=71 Identities=21% Similarity=0.369 Sum_probs=53.9
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.+...|.+..+.+|+.+.|.|.+.+.|.| ..+.|++++..+.... .+. +.|.....+|+|.|+|
T Consensus 3 ~f~~~P~~~~v~~G~~~~l~C~~~g~P~P-~~i~W~k~g~~i~~~~----------~~~-----~~l~~~~~~d~G~Y~C 66 (85)
T d1rhfa2 3 FFTVEPKDLAVPPNAPFQLSCEAVGPPEP-VTIVWWRGTTKIGGPA----------PSP-----SVLNVTGVTQSTMFSC 66 (85)
T ss_dssp EEEECCCCEEECTTCCEEEEEEEECSSSC-CEEEEEETTEECSCSE----------ESS-----EEEEECCCSSCEEEEE
T ss_pred cEEEeCCcEEEcCCCEEEEEEEEecCCcc-eEEEEEECCEECCCCC----------Ccc-----eEEecCCccccEEEEE
Confidence 34556777889999999999999998766 2499999998773211 111 5556667789999999
Q ss_pred EcccCCe
Q psy13371 168 SPSNADV 174 (212)
Q Consensus 168 ~~~n~~~ 174 (212)
.|.|..+
T Consensus 67 ~A~N~~G 73 (85)
T d1rhfa2 67 EAHNLKG 73 (85)
T ss_dssp EEEETTE
T ss_pred EEEcCCC
Confidence 9999854
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2e-13 Score=79.26 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=49.7
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++..+.+|+.++|.|.+.+.|.|. +.|++++...... .. .|.|.++..+|+|.|+|.|.|.
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~p~P~--i~W~~~~~~~~~~-----------~~-----~l~i~~v~~~DsG~Y~C~a~N~ 67 (84)
T d2nxyb2 7 SDTHLLQGQSLTLTLESPPGSSPS--VQCRSPRGKNIQG-----------GK-----TLSVSQLELQDSGTWTCTVLQN 67 (84)
T ss_dssp CSSCEETTCCEEEEEECCTTCCCE--EEEECTTCCEEEE-----------SS-----EEEESSCCGGGCEEEEEEEEET
T ss_pred CCeEEECCCeEEEEEEeEcCCchh--eEEEeecccceee-----------ee-----eeeeeecccccccEEEEEEEeC
Confidence 345689999999999999887777 9999877544221 11 3899999999999999999998
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.45 E-value=1.8e-13 Score=81.13 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=54.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++++. .+.. +.++... .......|.|.++..+|+|.|+|.+.|. +..+..+
T Consensus 20 ~~l~c~~~g~P~p~v~W~~~~~-~i~~--------~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 88 (93)
T d1wiua_ 20 HNLEVDFIGAPDPTATWTVGDS-GAAL--------APELLVD--AKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIF 88 (93)
T ss_dssp CEEEEEEECCSSCEEEEECSSS-SCBC--------STTSEEE--EETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEecCCeEEEEeeee-ecee--------eeeeeec--ccccceeeccccccccccEEEEEEEEECCCEEEEEE
Confidence 4699999999999999999874 2222 3344444 3346678999999999999999999996 4556666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 89 ~l~V 92 (93)
T d1wiua_ 89 EVIV 92 (93)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=4.9e-13 Score=80.90 Aligned_cols=81 Identities=17% Similarity=0.353 Sum_probs=59.2
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCC-CCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
..+....+..|+.+.|.|.+.+.|. |. +.|+++++.+....... .......+......|.|.++..+|+|.|+|.|
T Consensus 8 ~~~~~~~v~~G~~v~L~C~v~g~p~~P~--v~W~k~~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 84 (104)
T d2aw2a1 8 KRQSEHSILAGDPFELECPVKYCANRPH--VTWCKLNGTTCVKLEDR-QTSWKEEKNISFFILHFEPVLPNDNGSYRCSA 84 (104)
T ss_dssp CTTEEEEEETTSCEEEEEEEECSSSCCE--EEEEEECSSCEEECCSS-CEEEEECSSCEEEEEEESSCCGGGCEEEEEEE
T ss_pred ecCCeEEEeCCCeEEEEEEEEeeCCCCE--EEEEecCccccccccee-eeeEEecCCceEEEEEEccccHHHCCeEEEEE
Confidence 3445567899999999999998874 54 99999887664443322 22223333334457999999999999999999
Q ss_pred ccCCe
Q psy13371 170 SNADV 174 (212)
Q Consensus 170 ~n~~~ 174 (212)
.|..+
T Consensus 85 ~N~~G 89 (104)
T d2aw2a1 85 NFQSN 89 (104)
T ss_dssp EETTE
T ss_pred EcCCC
Confidence 99843
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.44 E-value=7.6e-13 Score=80.78 Aligned_cols=78 Identities=19% Similarity=0.423 Sum_probs=52.6
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCcee-------EEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVS-------VITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
|.+..+..|+++.|.|.+.+.|.|. +.|++++............. ..........+.|.|.++..+|.|.|
T Consensus 12 P~~~tv~~G~~v~l~C~v~g~P~p~--v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 89 (109)
T d2fdbp2 12 PANASTVVGGDVEFVCKVYSDAQPH--IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 89 (109)
T ss_dssp SCCEEECTTCCEEEEEEEECSSCCE--EEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEE
T ss_pred CCCEEEecCCcEEEEEEEEEcCCCe--EEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEE
Confidence 5678899999999999999987776 99998765432111110000 11111222346799999999999999
Q ss_pred EEEcccC
Q psy13371 166 SCSPSNA 172 (212)
Q Consensus 166 ~C~~~n~ 172 (212)
+|.|.|.
T Consensus 90 ~C~a~N~ 96 (109)
T d2fdbp2 90 TCLAGNS 96 (109)
T ss_dssp EEEEECS
T ss_pred EEEEEEC
Confidence 9999998
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.43 E-value=3.3e-13 Score=81.41 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=56.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+. .+.++.... ...+...|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 26 ~~l~C~~~g~P~p~v~W~k~~~--~i~-------~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 95 (102)
T d1fhga_ 26 ARFDCKVEGYPDPEVMWFKDDN--PVK-------ESRHFQIDY-DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 95 (102)
T ss_dssp EEEEEEEEEESCCEEEEEETTE--ECC-------CSSSEEEEE-CTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEeccCCeEEEEeeec--ccc-------ceeeEeEEE-ecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEE
Confidence 3689999999999999999873 222 134555542 3456778999999999999999999986 4556667
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 96 ~L~V~ 100 (102)
T d1fhga_ 96 ELLVE 100 (102)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77664
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.43 E-value=4.3e-13 Score=79.09 Aligned_cols=68 Identities=25% Similarity=0.441 Sum_probs=52.5
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|....+.+|+.++|.|.+.+.|.|. +.|++++..... ...... ..|.|.++..+|+|.|+|.|.|.
T Consensus 12 p~~~~~~~G~~v~l~C~~~g~P~p~--i~W~k~~~~~~~-------~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~ 77 (91)
T d1cs6a3 12 PADTYALTGQMVTLECFAFGNPVPQ--IKWRKLDGSQTS-------KWLSSE-----PLLHIQNVDFEDEGTYECEAENI 77 (91)
T ss_dssp CSEEEEETTCCEEEECEEEEESCCE--EEEEECCSCCSC-------CCSBSS-----SEEEECSCCGGGCEEEEEEEEET
T ss_pred CCcEEEecCCcEEEEEEEEEccCCE--EEEEecccccce-------Eeeeee-----eEEEeCCCCccCCEEEEEEEEEC
Confidence 5677899999999999999988776 999987653311 011112 24999999999999999999998
Q ss_pred Ce
Q psy13371 173 DV 174 (212)
Q Consensus 173 ~~ 174 (212)
.+
T Consensus 78 ~G 79 (91)
T d1cs6a3 78 KG 79 (91)
T ss_dssp TE
T ss_pred CC
Confidence 43
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.42 E-value=7.7e-13 Score=77.38 Aligned_cols=69 Identities=26% Similarity=0.463 Sum_probs=53.1
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
+..++...+.+|+.++|.|.+.+++ |...+.|++++..+...... ..|.|.++..+|+|.|+|.|
T Consensus 4 ilq~p~~~v~eG~~v~L~C~~~~~~-p~~~~~W~k~g~~~~~~~~~--------------~~l~i~~v~~~dsG~Y~C~a 68 (88)
T d2fcba2 4 VLQTPHLEFQEGETIVLRCHSWKDK-PLVKVTFFQNGKSKKFSRSD--------------PNFSIPQANHSHSGDYHCTG 68 (88)
T ss_dssp EEECSCSEECTTCCEEEEEEEGGGC-CCEEEEEEETTEEEEEESSC--------------CEEEETTCCGGGCEEEEEEE
T ss_pred EEeCCCCeEecCCeEEEEEEecCCC-CCcEEEEEeecccccccccc--------------cccccCccCHHHCCeEEEEE
Confidence 3444556688999999999997653 44569999999877533221 13999999999999999999
Q ss_pred ccCC
Q psy13371 170 SNAD 173 (212)
Q Consensus 170 ~n~~ 173 (212)
.|..
T Consensus 69 ~n~~ 72 (88)
T d2fcba2 69 NIGY 72 (88)
T ss_dssp EETT
T ss_pred EeCC
Confidence 9974
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.42 E-value=1.1e-13 Score=82.77 Aligned_cols=74 Identities=18% Similarity=0.300 Sum_probs=56.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.|.|+|++. .+.. +.++... ...+.+.|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 19 ~~l~C~~~g~P~p~v~W~~~~~-~l~~--------~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 87 (97)
T d1koaa1 19 ANFYCRVIASSPPVVTWHKDDR-ELKQ--------SVKYMKR--YNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIV 87 (97)
T ss_dssp EEEEEEEECSSCCEEEEEETTE-ECCS--------BTTBBCC--CSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEEeee-ccce--------eeEEEEE--ecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEE
Confidence 3689999999999999999873 2222 2344443 3456778999999999999999999986 4556666
Q ss_pred EEEEec
Q psy13371 80 NLNVVV 85 (212)
Q Consensus 80 ~l~v~~ 85 (212)
.|.|..
T Consensus 88 ~l~V~~ 93 (97)
T d1koaa1 88 FLNVTR 93 (97)
T ss_dssp CCEEEC
T ss_pred EEEEee
Confidence 777754
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.42 E-value=6.6e-13 Score=77.80 Aligned_cols=69 Identities=23% Similarity=0.339 Sum_probs=52.5
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
+..++...+.+|+.++|.|.+.+++ |...+.|++++..+.... ... .|.|.++..+|+|.|+|.|
T Consensus 6 ilq~p~~~v~eG~~v~L~C~~~~~~-p~~~~~W~kng~~~~~~~---------~~~-----~l~I~~v~~~dsG~Y~C~a 70 (89)
T d1fnla2 6 LLQAPRWVFKEEDPIHLRCHSWKNT-ALHKVTYLQNGKDRKYFH---------HNS-----DFHIPKATLKDSGSYFCRG 70 (89)
T ss_dssp EEECSCSEEETTCCEEEEEEECTTC-CCEEEEEEETTEEEEEEE---------ECC-----CEEESSCCGGGCEEEEEEE
T ss_pred EEECCCCeEccCCeEEEEEEecCCC-CCcEEEEEEcccccceec---------ccc-----ccEECccceeccceEEEEE
Confidence 3444556689999999999987553 445699999998764321 111 3899999999999999999
Q ss_pred ccCC
Q psy13371 170 SNAD 173 (212)
Q Consensus 170 ~n~~ 173 (212)
.|..
T Consensus 71 ~n~~ 74 (89)
T d1fnla2 71 LVGS 74 (89)
T ss_dssp EETT
T ss_pred EeCC
Confidence 9873
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.4e-13 Score=78.26 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=50.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++++.. ... +...|+|.++..+|+|.|+|.+.|. +.....+
T Consensus 17 ~~L~C~~~g~p~P~i~W~~~~~~-~~~--------------------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~ 75 (84)
T d2nxyb2 17 LTLTLESPPGSSPSVQCRSPRGK-NIQ--------------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKI 75 (84)
T ss_dssp EEEEEECCTTCCCEEEEECTTCC-EEE--------------------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEeEcCCchheEEEeeccc-cee--------------------eeeeeeeeecccccccEEEEEEEeCCCEEEEEE
Confidence 46999999999999999997742 211 1226889999999999999999986 4556666
Q ss_pred EEEEecc
Q psy13371 80 NLNVVVP 86 (212)
Q Consensus 80 ~l~v~~~ 86 (212)
.|.|...
T Consensus 76 ~v~V~~~ 82 (84)
T d2nxyb2 76 DIVVLAF 82 (84)
T ss_dssp EECEECC
T ss_pred EEEEEec
Confidence 6666543
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=1.7e-12 Score=77.46 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=53.8
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC-eEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
.|....+..|+.+.|.|.+.+.|+ ...+.|++++ ..+.... .. ......... .+.|.|.++..+|+|.|+|.|.
T Consensus 6 ~P~~~~v~~G~~~~l~C~v~g~p~-~~~v~W~~~~g~~~~~~~-~~-~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~ 80 (97)
T d1epfa1 6 VPSQGEISVGESKFFLCQVAGDAK-DKDISWFSPNGEKLSPNQ-QR-ISVVWNDDD--SSTLTIYNANIDDAGIYKCVVT 80 (97)
T ss_dssp ESSSEEEETTCCEEEEEEECCCSC-CCEEEEECTTSCEECCBS-SS-EEEEEEETT--EEEEEECSCCGGGCEEEEEEEE
T ss_pred ECCCEEEccCCcEEEEEEEEeccC-CCEEEEEEeeeeeeeecc-cc-EEEEeecCc--ceEEEcccCchhhceEEEEEEE
Confidence 356678899999999999988764 2359999854 4442221 11 111222222 2469999999999999999999
Q ss_pred cCCe
Q psy13371 171 NADV 174 (212)
Q Consensus 171 n~~~ 174 (212)
|..+
T Consensus 81 N~~G 84 (97)
T d1epfa1 81 AEDG 84 (97)
T ss_dssp ETTT
T ss_pred eCCC
Confidence 9843
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.41 E-value=4.6e-13 Score=80.14 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=55.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.++.... ...+.+.|+|.++..+|+|.|+|.+.|. +..+..+
T Consensus 22 v~l~c~v~g~P~p~v~W~k~~~-~i~~--------~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 91 (98)
T d1g1ca_ 22 AHFRVRVVGKPDPECEWYKNGV-KIER--------SDRIYWYW-PEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHA 91 (98)
T ss_dssp EEEEEEEEEESCCEEEEEETTE-ECCC--------CSSEEEEE-EETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEecCCeEEEEeCce-EEee--------eeeeEEEe-ccceEEEEEeccCccccCEEEEEEEEECCcEEEEEE
Confidence 3689999999999999999873 3322 23333331 2346778999999999999999999986 4556667
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 92 ~L~V~ 96 (98)
T d1g1ca_ 92 FLLVQ 96 (98)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77765
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=5.4e-13 Score=80.31 Aligned_cols=85 Identities=20% Similarity=0.335 Sum_probs=58.2
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEee--CCCCceeEEeecCceEEEEEEEeeee-ecCC
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYD--SSRGGVSVITEKGEVTTSYLLIQQAE-LKDS 162 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~ 162 (212)
||.....+....+.+|+.+.|.|.+.+.|.|. .+.|++++...... .....+......+. .+.|.|.++. .+|+
T Consensus 2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~~D~ 78 (101)
T d3b5ha1 2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVT-DWAWYKITDSEDKALMNGSESRFFVSSSQG--RSELHIENLNMEADP 78 (101)
T ss_dssp SCCCEESCSEEEECTTSCEEEEEECCCSSCCC-EEEEEECCSSSCEECCTTGGGTEEEEEETT--EEEEEECSCCTTTSS
T ss_pred CceEEEcCCcEEECcCCeEEEEEEEEecCCee-EEEEEeccceeeeecccCCCceEEEEeCCC--EEEEEEeccccccCC
Confidence 45555566777899999999999999887553 58999876433211 11112222333332 2469999998 5799
Q ss_pred EEEEEEcccCC
Q psy13371 163 GKYSCSPSNAD 173 (212)
Q Consensus 163 g~y~C~~~n~~ 173 (212)
|.|+|.|.|..
T Consensus 79 G~Y~C~A~N~~ 89 (101)
T d3b5ha1 79 GQYRCNGTSSK 89 (101)
T ss_dssp EEEEEEEEETT
T ss_pred EEEEEEEEECC
Confidence 99999999983
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.41 E-value=2.6e-13 Score=79.72 Aligned_cols=67 Identities=24% Similarity=0.344 Sum_probs=51.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+. ++|+.+.. ..|.|.+++.+|+|.|.|.+.|. +.....+
T Consensus 21 ~~l~C~~~g~P~p~v~W~~~~~--~i~--------~~~~~~~~------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 84 (89)
T d1biha4 21 VTIPCKVTGLPAPNVVWSHNAK--PLS--------GGRATVTD------SGLVIKGVKNGDKGYYGCRATNEHGDKYFET 84 (89)
T ss_dssp EEEECEEEEESCCCCEEEETTE--ECC--------SSSEEEET------TEEEESSCCSTTCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEeCCCEEEEEeCCc--cCc--------cccEEEee------eeEEECCCChhhCEEEEEEEEECCCEEEEEE
Confidence 3689999999999999999773 232 34555542 16999999999999999999986 4455555
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|.|
T Consensus 85 ~l~V 88 (89)
T d1biha4 85 LVQV 88 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=8e-13 Score=78.06 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=57.5
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
...|.+..+.+|+.+.|.|.+.+.|.|. +.|+++++.+...... ......++ .|.|.++..+|+|.|+|.|
T Consensus 5 ~~~P~~~~v~~G~~~~l~C~v~g~p~p~--v~W~~~~~~i~~~~~~--~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a 75 (92)
T d1epfa2 5 KNAPTPQEFKEGEDAVIVCDVVSSLPPT--IIWKHKGRDVILKKDV--RFIVLSNN-----YLQIRGIKKTDEGTYRCEG 75 (92)
T ss_dssp EECCSSEECCTTSCEEECCEEECSSCCE--EEEEETTEEGGGGCCT--TEEECTTS-----CEEETTCCGGGCEEEEEEE
T ss_pred EEcCCCEEEeCCCcEEEEEEEeecCCCe--EEEEEcCcccccccce--eeeeeeee-----eEEECCCCHHhCEEEEEEE
Confidence 3456778899999999999999887776 9999999877443322 12222233 3999999999999999999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.|.
T Consensus 76 ~n~ 78 (92)
T d1epfa2 76 RIL 78 (92)
T ss_dssp EEG
T ss_pred EEC
Confidence 996
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=6.5e-13 Score=78.35 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=53.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc-eeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV-RSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~-~~~~ 78 (212)
+.|.|.+.+.|.|.+.|+|++. .+.. +.+.............|.|.+++.+|+|.|+|.+.|. +. .+..
T Consensus 14 ~~l~C~v~g~p~p~v~W~k~g~--~l~~-------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~ 84 (91)
T d1rhfa1 14 VKLNCSVEGMEEPDIQWVKDGA--VVQN-------LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP 84 (91)
T ss_dssp EEEEEEEESCSSCCEEEEETTE--ECCS-------SEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCC
T ss_pred EEEEEEEEecCCceEEEEEeec--cccc-------ceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEE
Confidence 4799999999999999999873 2221 1122233223334568999999999999999999986 32 3456
Q ss_pred EEEEEe
Q psy13371 79 VNLNVV 84 (212)
Q Consensus 79 ~~l~v~ 84 (212)
+.|.|.
T Consensus 85 ~~l~V~ 90 (91)
T d1rhfa1 85 VWLTVE 90 (91)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666664
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.39 E-value=1.9e-13 Score=80.66 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=50.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|+++..... ....+..|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 23 v~l~C~~~g~P~p~i~W~k~~~~~~~~-----------------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 85 (91)
T d1cs6a3 23 VTLECFAFGNPVPQIKWRKLDGSQTSK-----------------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQG 85 (91)
T ss_dssp EEEECEEEEESCCEEEEEECCSCCSCC-----------------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEccCCEEEEEecccccceE-----------------eeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEE
Confidence 469999999999999999977421110 1113347999999999999999999996 4555666
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 86 ~l~V~ 90 (91)
T d1cs6a3 86 RIIIH 90 (91)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66664
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.5e-12 Score=78.53 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=58.7
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCC-CceEEEEEcCeEEEeeCCCCcee---EEeecCceEEEEEEEeeeeecCCE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWYHHDEVISYDSSRGGVS---VITEKGEVTTSYLLIQQAELKDSG 163 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g 163 (212)
.++..|.+..+..|++++|.|.+.+.|.. .+.+.|++++............. ..........+.|.|.+++.+|+|
T Consensus 6 ~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 85 (110)
T d2avga1 6 LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG 85 (110)
T ss_dssp SEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCE
T ss_pred EeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCc
Confidence 35566778899999999999999988732 23499998775332111111111 111223334567999999999999
Q ss_pred EEEEEcccC
Q psy13371 164 KYSCSPSNA 172 (212)
Q Consensus 164 ~y~C~~~n~ 172 (212)
.|+|.|.|.
T Consensus 86 ~Y~C~a~N~ 94 (110)
T d2avga1 86 GYRCEVSTK 94 (110)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEEEC
Confidence 999999998
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.38 E-value=4.7e-13 Score=78.54 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=52.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.. +.++.+. +..|.|.++..+|+|.|+|.+.|. +.....+
T Consensus 19 ~~l~C~~~g~P~p~v~W~k~g~-~i~~--------~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 83 (89)
T d1cs6a4 19 LRWSCVASGKPRPAVRWLRDGQ-PLAS--------QNRIEVS------GGELRFSKLVLEDSGMYQCVAENKHGTVYASA 83 (89)
T ss_dssp EEEECEEEEESCCEEEEEETTE-ECCC--------CSSEEEE------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEEcCCEEEEEEeec-cccc--------cceeeee------eeeEEEEeecccCCEEEEEEEEeCCCEEEEEE
Confidence 3689999999999999999773 2222 3355543 227999999999999999999986 4556666
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 84 ~l~V~ 88 (89)
T d1cs6a4 84 ELTVQ 88 (89)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77664
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.38 E-value=1.2e-12 Score=77.62 Aligned_cols=80 Identities=13% Similarity=0.234 Sum_probs=58.7
Q ss_pred ceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 88 AEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.....|.+..+.+|+.+.|.|.+.+.|.|. .+.|++++..+.... . ........ .+|.|.++..+|+|.|+|
T Consensus 4 ~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~-~v~W~~~g~~l~~~~--~-~~~~~~~~----~~L~i~~v~~~D~G~Y~C 75 (94)
T d1biha1 4 VLKDQPAEVLFRENNPTVLECIIEGNDQGV-KYSWKKDGKSYNWQE--H-NAALRKDE----GSLVFLRPQASDEGHYQC 75 (94)
T ss_dssp EECCCCSEEEEETTSCEEECCCEESCCSSC-EEEEEESSSBCCTTT--T-TEEECTTS----CCEEESSCCGGGCEEEEE
T ss_pred EEEecCCcEEEeCCCeEEEEEEecCCCCee-EEEEEeeeeeeeeec--c-eeeecccc----eEEEEeccChhcCeEEEE
Confidence 344556778899999999999999887552 489999998873221 1 11222222 239999999999999999
Q ss_pred EcccCCee
Q psy13371 168 SPSNADVA 175 (212)
Q Consensus 168 ~~~n~~~~ 175 (212)
.|.|..+.
T Consensus 76 ~a~N~~G~ 83 (94)
T d1biha1 76 FAETPAGV 83 (94)
T ss_dssp EEEETTEE
T ss_pred EEEeCCCE
Confidence 99998553
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.4e-12 Score=77.93 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=54.6
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC-CeeEEE
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA-DVASVY 178 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~-~~~~~~ 178 (212)
.+....+.|.+.|.|.|. +.|++++..+.... .........+....+.|.|.++..+|+|.|+|.|.|. ...+..
T Consensus 16 ~~~~~~i~~~v~G~P~P~--v~W~~n~~~i~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 91 (105)
T d1wwca_ 16 LRLEHCIEFVVRGNPPPT--LHWLHNGQPLRESK--IIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQT 91 (105)
T ss_dssp CCCEEEEEEEEECSSCCE--EEEEETTEECCCSS--SEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEEEEEEeCCCe--EEEEeCccccCCCc--ceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEE
Confidence 344566888999988776 99999999874321 1122233444455677999999999999999999998 333333
Q ss_pred EEE
Q psy13371 179 VHV 181 (212)
Q Consensus 179 ~~v 181 (212)
+.+
T Consensus 92 ~~v 94 (105)
T d1wwca_ 92 ING 94 (105)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.7e-13 Score=83.40 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=55.2
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcceeeeecceeeecCCceEEEe----eCCCCeEEEEEcccCCCCCEEEEEEecCC-
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIH----RREGDEWTLHIKWAQKRDAGVYECQLSTQ- 72 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~- 72 (212)
+.|.|.+.|.| .|.|.|+|++........ ..++.... ........|.|.+++.+|+|.|+|.+.|.
T Consensus 18 v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 91 (113)
T d2dava1 18 ITFIAKVKAEDLLRKPTIKWFKGKWMDLASKA------GKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKD 91 (113)
T ss_dssp EEEEEEEECCCSSSCCEEEEEESSSCCHHHHT------TSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSS
T ss_pred EEEEEEEccCCCCCCCEEEEEEeecccccccc------ceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeCC
Confidence 36899999988 689999997642221111 12222211 11223457999999999999999999986
Q ss_pred CceeEEEEEEEeccc
Q psy13371 73 PVRSFFVNLNVVVPT 87 (212)
Q Consensus 73 ~~~~~~~~l~v~~~~ 87 (212)
+..+..+.|.|..++
T Consensus 92 G~~~~~~~L~V~~~~ 106 (113)
T d2dava1 92 KFDSCSFDLEVHEST 106 (113)
T ss_dssp CEEEECCEEEEECCC
T ss_pred CEEEEEEEEEEEcCC
Confidence 566777788887544
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=3.4e-13 Score=82.52 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=54.1
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcceeeeecceeeecCCceEEEe----eCCCCeEEEEEcccCCCCCEEEEEEecCC-
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIH----RREGDEWTLHIKWAQKRDAGVYECQLSTQ- 72 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~- 72 (212)
+.|.|.+.|.| .|.|.|+|++........ ..++.... ......+.|.|.+++.+|+|.|+|.+.|.
T Consensus 22 v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 95 (110)
T d2avga1 22 ITFSARVAGASLLKPPVVKWFKGKWVDLSSKV------GQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKD 95 (110)
T ss_dssp EEEEEEEECCSCSSSCEEEEECSTTCCSTTTC------SSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEETT
T ss_pred EEEEEeecCCCCCCCCEEEEEeCceeeecccC------CceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEECC
Confidence 36899999988 689999997642221111 11222111 11223467999999999999999999986
Q ss_pred CceeEEEEEEEec
Q psy13371 73 PVRSFFVNLNVVV 85 (212)
Q Consensus 73 ~~~~~~~~l~v~~ 85 (212)
+..+..+.|.|.+
T Consensus 96 G~~~~~~~L~V~~ 108 (110)
T d2avga1 96 KFDCSNFNLTVHE 108 (110)
T ss_dssp EEEEEEEEEEEES
T ss_pred CeEEEEEEEEEEe
Confidence 5667778888764
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.37 E-value=6.6e-13 Score=79.26 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=51.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc-eeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV-RSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~-~~~~ 78 (212)
+.|.|.+.|.|.|.+.|+|++. .+.... +.++.. .......+|+|.+++.+|+|.|+|.+.|. +. .+..
T Consensus 21 v~l~C~~~g~P~~~v~W~k~g~-~i~~~~------~~~~~~--~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s 91 (97)
T d1biha3 21 TMIYCMYGSNPMGYPNYFKNGK-DVNGNP------EDRITR--HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS 91 (97)
T ss_dssp EEEEEEEECSSCCCCEEEETTE-ECCCCT------TSSEES--CSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEE
T ss_pred EEEEEEEEEecCCEEEEEEeee-eccccc------eeeeee--eeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEE
Confidence 3699999999999999999873 222211 112221 12334458999999999999999999996 33 3456
Q ss_pred EEEEE
Q psy13371 79 VNLNV 83 (212)
Q Consensus 79 ~~l~v 83 (212)
+.|+|
T Consensus 92 ~~L~V 96 (97)
T d1biha3 92 LKLTV 96 (97)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 67776
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=2.7e-12 Score=76.51 Aligned_cols=76 Identities=24% Similarity=0.402 Sum_probs=54.3
Q ss_pred CeeEeeeCCCCC-ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc-eeE
Q psy13371 1 MLHQRKLKGLLP-TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV-RSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~-~~~ 77 (212)
+.|.|.+.|.|. |.+.|+|+++..+.+ .+.|+.... ......+|.|.+++.+|+|.|+|.+.|. +. .+.
T Consensus 18 ~~l~C~v~g~p~~~~v~W~~~~g~~~~~-------~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 89 (97)
T d1epfa1 18 KFFLCQVAGDAKDKDISWFSPNGEKLSP-------NQQRISVVW-NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA 89 (97)
T ss_dssp EEEEEEECCCSCCCEEEEECTTSCEECC-------BSSSEEEEE-EETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEE
T ss_pred EEEEEEEEeccCCCEEEEEEeeeeeeee-------ccccEEEEe-ecCcceEEEcccCchhhceEEEEEEEeCCCcEEEE
Confidence 368999999974 799999976533332 134555553 3345678999999999999999999986 32 234
Q ss_pred EEEEEEe
Q psy13371 78 FVNLNVV 84 (212)
Q Consensus 78 ~~~l~v~ 84 (212)
.+.|+|.
T Consensus 90 tv~l~V~ 96 (97)
T d1epfa1 90 TVNVKIF 96 (97)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5666654
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1e-12 Score=79.61 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=52.7
Q ss_pred eEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceE--EEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 3 HQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFS--AIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 3 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
|.|.+.|.|.|.+.|+|++ ..+... .++. ...+.......|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 22 i~~~v~G~P~P~v~W~~n~--~~i~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 92 (105)
T d1wwca_ 22 IEFVVRGNPPPTLHWLHNG--QPLRES-------KIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTI 92 (105)
T ss_dssp EEEEEECSSCCEEEEEETT--EECCCS-------SSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeCCCeEEEEeCc--cccCCC-------cceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEE
Confidence 6789999999999999987 333222 1222 11112223457999999999999999999996 4556666
Q ss_pred EEEEeccc
Q psy13371 80 NLNVVVPT 87 (212)
Q Consensus 80 ~l~v~~~~ 87 (212)
.|.|..+|
T Consensus 93 ~v~V~~~P 100 (105)
T d1wwca_ 93 NGHFLKEP 100 (105)
T ss_dssp EECCSCCC
T ss_pred EEEEEeCC
Confidence 66665543
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.36 E-value=1.6e-12 Score=79.33 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=51.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee--ecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT--VGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.|.|.|.|.|+|++...... ........................|+|.+++.+|+|.|+|.+.|. +....
T Consensus 23 v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~ 102 (109)
T d2fdbp2 23 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFH 102 (109)
T ss_dssp EEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred EEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEECCCEEEE
Confidence 368999999999999999976311110 010000000111111112334568999999999999999999986 55666
Q ss_pred EEEEEE
Q psy13371 78 FVNLNV 83 (212)
Q Consensus 78 ~~~l~v 83 (212)
.+.|.|
T Consensus 103 ~~~L~V 108 (109)
T d2fdbp2 103 SAWLTV 108 (109)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 677765
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.5e-12 Score=77.02 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=52.8
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-c-eeE
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-V-RSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~-~~~ 77 (212)
+.|.|.+.|.| .|.|.|+|++........ ..+.....+.......|+|.+++.+|+|.|.|.+.|.. . .+.
T Consensus 21 v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~ 94 (104)
T d2aw2a1 21 FELECPVKYCANRPHVTWCKLNGTTCVKLE------DRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESH 94 (104)
T ss_dssp EEEEEEEECSSSCCEEEEEEECSSCEEECC------SSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred EEEEEEEEeeCCCCEEEEEecCcccccccc------eeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEE
Confidence 46999999998 589999998753222211 11222222233345679999999999999999999863 2 234
Q ss_pred EEEEEEe
Q psy13371 78 FVNLNVV 84 (212)
Q Consensus 78 ~~~l~v~ 84 (212)
.+.|.|.
T Consensus 95 ~~~l~V~ 101 (104)
T d2aw2a1 95 STTLYVT 101 (104)
T ss_dssp CEEEEEE
T ss_pred EEEEEEE
Confidence 5666664
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.6e-12 Score=78.87 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=60.9
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCC-CceEEEEEcCeEEEeeCCCCc-ee--EEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWYHHDEVISYDSSRGG-VS--VITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+..|.+..+.+|+.++|.|.+.+.|.+ .+.+.|++++........... .. ..........+.|.|.++..+|+|.|
T Consensus 4 ~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 83 (113)
T d2dava1 4 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNY 83 (113)
T ss_dssp CSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEE
T ss_pred eECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEE
Confidence 345677889999999999999988732 235999998643221111111 11 11122233446799999999999999
Q ss_pred EEEcccCC---eeEEEEEEe
Q psy13371 166 SCSPSNAD---VASVYVHVL 182 (212)
Q Consensus 166 ~C~~~n~~---~~~~~~~v~ 182 (212)
+|.|.|.. ...+.+.|.
T Consensus 84 ~C~a~N~~G~~~~~~~L~V~ 103 (113)
T d2dava1 84 RCEVTYKDKFDSCSFDLEVH 103 (113)
T ss_dssp EEEEECSSCEEEECCEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEEE
Confidence 99999983 333455553
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.5e-12 Score=80.89 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=56.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeec--------------------ceeeecCCceEEEeeCCCCeEEEEEcccCCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVG--------------------SYTYTSDQRFSAIHRREGDEWTLHIKWAQKR 60 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~--------------------~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~ 60 (212)
+.|.|.+.|.|.|.+.|++++........ ......+.|+.+. .......|.|.+++.+
T Consensus 27 v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~ 104 (130)
T d1gxea_ 27 LRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVE--TTKDRSIFTVEGAEKE 104 (130)
T ss_dssp CCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEE--EETTEEEEECSCCCTT
T ss_pred EEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEE--ECCCEEEEEECcCChh
Confidence 46999999999999999997631100000 0011112455554 3446678999999999
Q ss_pred CCEEEEEEecCC-CceeEEEEEEEe
Q psy13371 61 DAGVYECQLSTQ-PVRSFFVNLNVV 84 (212)
Q Consensus 61 d~G~Y~C~~~~~-~~~~~~~~l~v~ 84 (212)
|+|.|+|.+.|. +..+..+.|.|.
T Consensus 105 D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 105 DEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp TCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred cCEEEEEEEEECCCEEEEEEEEEEE
Confidence 999999999996 566667777664
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=8.7e-12 Score=73.15 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=59.0
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
.+.+..+..|+.+.|.|.+ +.|.|. +.|++++.++..... .......++.. ..|.|.++..+|+|.|+|.|.|
T Consensus 6 ~l~~~~v~~G~~v~l~C~v-~~p~~~--v~W~k~~~~~~~~~~--~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~n 78 (90)
T d1x44a1 6 QLEDTTAYCGERVELECEV-SEDDAN--VKWFKNGEEIIPGPK--SRYRIRVEGKK--HILIIEGATKADAAEYSVMTTG 78 (90)
T ss_dssp CCCCEEEETTEEEEEEEEC-SSSSCC--CEEEETTEECCCSTT--CSEEEEEETTE--EEEEEEEECTTTCSEEEEEETT
T ss_pred CCCCEEEeCCCcEEEEEEE-CCCCce--EEEEEeecccCCCCC--ccEEEEEeCCc--cEEEECccccccCEEEEEEEec
Confidence 3467789999999999998 455565 999999987743322 22333343332 4599999999999999999988
Q ss_pred CCeeEEEEEE
Q psy13371 172 ADVASVYVHV 181 (212)
Q Consensus 172 ~~~~~~~~~v 181 (212)
. ..++.+.|
T Consensus 79 ~-~~~a~l~V 87 (90)
T d1x44a1 79 G-QSSAKLSV 87 (90)
T ss_dssp E-EEEEEEEE
T ss_pred c-eEEEEEEE
Confidence 5 23444544
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.7e-12 Score=75.43 Aligned_cols=68 Identities=24% Similarity=0.378 Sum_probs=50.7
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
...+..|+.+.|.|.+.+.|.|. +.|.+++.... ...... . . ..+.|.|.++..+|+|.|+|.|.|..
T Consensus 10 ~~~~~~G~~v~l~C~~~g~p~p~--i~W~~~~~~~~-----~~~~~~-~-~--~~~~L~I~~v~~~d~G~Y~C~a~N~~ 77 (90)
T d1vcaa2 10 RYLAQIGDSVSLTCSTTGCESPF--FSWRTQIDSPL-----NGKVTN-E-G--TTSTLTMNPVSFGNEHSYLCTATCES 77 (90)
T ss_dssp EEEEETTSCEEEEEEEESCSSCE--EEEEETTCCCC-----SSEEEE-E-T--TEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred cEEEECCCEEEEEEeccCCCCce--EEEEecCccce-----eeeeee-e-c--CCcEEEEecccccccceEEEEEEeCC
Confidence 34567899999999999887776 99998876441 111111 1 1 12469999999999999999999983
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=5.6e-13 Score=80.07 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=51.8
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.+.|.|.|.+.|+|++. .+...... ..+.. .......|.|.+++.+|+|.|.|.+.|. +..+..+.
T Consensus 24 ~l~C~~~g~P~p~i~W~~~g~-~i~~~~~~----~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 94 (100)
T d1qz1a3 24 TLVCDADGFPEPTMSWTKDGE-PIENEEED----DEKHI----FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIH 94 (100)
T ss_dssp EEEEEEEEESCCEEEEEETTE-ECCCC--C----CSSEE----ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEecCCEEEEEeCCc-cccccccc----ceeEE----eecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEE
Confidence 689999999999999999773 22211100 11111 1224568999999999999999999986 45566667
Q ss_pred EEEe
Q psy13371 81 LNVV 84 (212)
Q Consensus 81 l~v~ 84 (212)
|.|.
T Consensus 95 l~V~ 98 (100)
T d1qz1a3 95 LKVF 98 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.2e-12 Score=76.94 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=51.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|++++.. ... + ... .......|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 19 v~l~C~~~g~p~p~i~W~~~~~~-~~~-~--------~~~----~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~ 84 (90)
T d1vcaa2 19 VSLTCSTTGCESPFFSWRTQIDS-PLN-G--------KVT----NEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGI 84 (90)
T ss_dssp EEEEEEEESCSSCEEEEEETTCC-CCS-S--------EEE----EETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred EEEEEeccCCCCceEEEEecCcc-cee-e--------eee----eecCCcEEEEecccccccceEEEEEEeCCCEEEEEE
Confidence 46999999999999999987742 211 1 110 1224568999999999999999999986 4556666
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 85 ~v~V~ 89 (90)
T d1vcaa2 85 QVEIY 89 (90)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66653
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.3e-12 Score=75.48 Aligned_cols=69 Identities=23% Similarity=0.329 Sum_probs=52.6
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
+..++...+.+|+.++|.|.+.+.+ +...+.|+++|..+..... . ..|.|.+++.+|+|.|.|.|
T Consensus 4 ilq~p~~~V~eG~~v~L~C~~~~~~-~~~~~~w~k~g~~~~~~~~---------~-----~~l~i~~~~~~dsG~Y~C~a 68 (89)
T d1f2qa2 4 LLQASAEVVMEGQPLFLRCHGWRNW-DVYKVIYYKDGEALKYWYE---------N-----HNISITNATVEDSGTYYCTG 68 (89)
T ss_dssp EEEESCSEEETTSCEEEEEEEGGGC-CEEEEEEEETTEECCSCCC---------S-----SEEEESSCCGGGCEEEEEEE
T ss_pred EEeCCcCeEeCCCEEEEEEEecCCC-CCeEEEEEEeeeccccccc---------c-----ceEEEeeeeeecCcEEEEEE
Confidence 3344556789999999999997664 4457999999987632111 1 23899999999999999999
Q ss_pred ccCC
Q psy13371 170 SNAD 173 (212)
Q Consensus 170 ~n~~ 173 (212)
.|..
T Consensus 69 ~n~~ 72 (89)
T d1f2qa2 69 KVWQ 72 (89)
T ss_dssp EETT
T ss_pred EeCC
Confidence 9873
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.33 E-value=3.5e-12 Score=74.00 Aligned_cols=75 Identities=27% Similarity=0.413 Sum_probs=56.0
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
...|....+.+|+.++|.|.+.+.+.+ ..+.|++++..+... .. .|.|.++..+|+|.|.|.+
T Consensus 8 ~~~P~~~~v~~G~~v~L~C~~~~~~~~-~~~~w~~~g~~~~~~-----------~~-----~l~i~~v~~~dsG~Y~C~a 70 (85)
T d2fcba1 8 KLEPQWINVLQEDSVTLTCRGTHSPES-DSIQWFHNGNLIPTH-----------TQ-----PSYRFKANNNDSGEYTCQT 70 (85)
T ss_dssp EEESCCSEEETTCEEEEEEECSSCCCT-TCCEEEETTEECTTC-----------CS-----SEEEEECCGGGCEEEEEEC
T ss_pred EECCCCeEEcCCCeEEEEEEEeeccce-eEEEeeccccccccc-----------cc-----ceEEeeccccCCcEEEEEC
Confidence 345666789999999999999877654 347889988776211 11 2889999999999999999
Q ss_pred ccC-CeeEEEEEE
Q psy13371 170 SNA-DVASVYVHV 181 (212)
Q Consensus 170 ~n~-~~~~~~~~v 181 (212)
.|. .+..+.+.|
T Consensus 71 ~ns~~S~~v~l~V 83 (85)
T d2fcba1 71 GQTSLSDPVHLTV 83 (85)
T ss_dssp TTSBCCCCEEEEE
T ss_pred CCCcccccEEEEE
Confidence 987 444455554
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=6.6e-12 Score=73.58 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=51.8
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
.+....+.+|+.+.|.|.+.+.+ |...+.|++++..+... . .....+ .|.|.++..+|+|.|+|.|.|
T Consensus 8 ~p~~~~v~~G~~~~l~C~~~~~~-p~~~v~W~k~~~~~~~~-----~-~~~~~~-----~L~i~~v~~~d~G~Y~C~a~N 75 (89)
T d1gl4b_ 8 EQRSQSVRPGADVTFICTAKSKS-PAYTLVWTRLHNGKLPS-----R-AMDFNG-----ILTIRNVQPSDAGTYVCTGSN 75 (89)
T ss_dssp SCCEEEECTTCCEEEEEEEEESS-SCCEEEEEEGGGBCCCT-----T-EEEETT-----EEEECSCCGGGCEEEEEEEEC
T ss_pred CCCeEEEeCCCcEEEEEEccCCC-CCCEEEEecCCceeecc-----c-cEeece-----EEEEecCCcccCEEEEEEEEE
Confidence 34567789999999999998542 33349999988765211 1 122222 499999999999999999999
Q ss_pred CC
Q psy13371 172 AD 173 (212)
Q Consensus 172 ~~ 173 (212)
..
T Consensus 76 ~~ 77 (89)
T d1gl4b_ 76 MF 77 (89)
T ss_dssp SS
T ss_pred CC
Confidence 83
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.32 E-value=3e-13 Score=80.81 Aligned_cols=73 Identities=14% Similarity=0.305 Sum_probs=51.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+...... ..+.. .....+|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus 23 v~l~C~~~g~P~p~i~W~kng~-~l~~~~~~-----~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 92 (97)
T d3dara1 23 VKFRCPAGGNPMPTMRWLKNGK-EFKQEHRI-----GGYKV----RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 92 (97)
T ss_dssp EEEECCEEEESCCEEEEEETTE-ECCGGGST-----TCCEE----EGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeEECCCEEEEEECCE-eccccCce-----eeEEE----cCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEE
Confidence 4689999999999999999873 22221110 11111 123458999999999999999999986 4556666
Q ss_pred EEEE
Q psy13371 80 NLNV 83 (212)
Q Consensus 80 ~l~v 83 (212)
.|+|
T Consensus 93 ~l~V 96 (97)
T d3dara1 93 HLDV 96 (97)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=5.4e-12 Score=75.99 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=53.6
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEee---CCCCeEEEEEcccCCCCCEEEEEEecCC-CceeE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHR---REGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 77 (212)
.+.|.+.|.|.|.|.|+|++. .+..+ .++..... .......|.|.+++.+|+|.|+|.+.|. +..+.
T Consensus 20 ~i~~~v~G~P~P~i~W~~~g~--~l~~~-------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~ 90 (103)
T d1wwbx_ 20 CIPFTVKGNPKPALQWFYNGA--ILNES-------KYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK 90 (103)
T ss_dssp EEEEEEECSSCCEEEEEETTE--EECCC-------SSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred EEEEEEEEeCCCEEEEEECCE--Eeeee-------eeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEE
Confidence 378999999999999999773 33221 22222211 1223457999999999999999999996 55666
Q ss_pred EEEEEEeccc
Q psy13371 78 FVNLNVVVPT 87 (212)
Q Consensus 78 ~~~l~v~~~~ 87 (212)
.+.|.|...|
T Consensus 91 ~~~v~V~~~P 100 (103)
T d1wwbx_ 91 QISAHFMGWP 100 (103)
T ss_dssp EEEECCSCCC
T ss_pred EEEEEEEeCC
Confidence 6666665443
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.30 E-value=5.6e-12 Score=72.95 Aligned_cols=67 Identities=31% Similarity=0.560 Sum_probs=51.6
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....|....+.+|+.++|.|.+.+.+.+. .+.|++++..+.... ..|.|.++..+|+|.|+|.
T Consensus 8 i~~~P~~~~v~~G~~vtL~C~~~~~~~~~-~~~~~~~~~~~~~~~----------------~~l~i~~~~~~d~G~Y~C~ 70 (84)
T d1fnla1 8 VFLEPQWYSVLEKDSVTLKCQGAYSPEDN-STQWFHNESLISSQA----------------SSYFIDAATVNDSGEYRCQ 70 (84)
T ss_dssp EEEESCCSEEETTCCEEEEEECCCBTTBC-CCEEEETTEEEESSC----------------SEEEESSCCGGGCEEEEEE
T ss_pred EEECCCCcEEeCCCeEEEEEEeccCCCCe-EEEEeeeceeeeecc----------------eeeEecCCcccCCEEEEEE
Confidence 34556677899999999999998877554 356777777653111 1399999999999999999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
+.|.
T Consensus 71 a~~s 74 (84)
T d1fnla1 71 TNLS 74 (84)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 9876
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.30 E-value=5.2e-12 Score=75.25 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=57.7
Q ss_pred ccceeeCCCceeeeCC---CcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCC
Q psy13371 86 PTAEILGSPDLHVDEG---STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g---~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 162 (212)
+|.+...|.+..+.+| +.+.|.|.+.+.|.|. +.|++++..+...... . .....+ ..|.+..+..+|+
T Consensus 4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~--v~W~~ng~~i~~~~~~--~-~~~~~~----~~l~i~~~~~~d~ 74 (97)
T d1cs6a1 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPAT--YRWKMNGTELKMGPDS--R-YRLVAG----DLVISNPVKAKDA 74 (97)
T ss_dssp EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCE--EEEEETTEECCCSTTS--S-EEEETT----EEEEESCCHHHHC
T ss_pred CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCE--EEEEEeeeeccCCCCc--e-EEeeee----eEEEEecccccCC
Confidence 3445556666666554 7899999999988776 9999999887433221 1 222222 2478888899999
Q ss_pred EEEEEEcccCCee
Q psy13371 163 GKYSCSPSNADVA 175 (212)
Q Consensus 163 g~y~C~~~n~~~~ 175 (212)
|.|+|.|.|..+.
T Consensus 75 G~Y~C~a~N~~G~ 87 (97)
T d1cs6a1 75 GSYQCVATNARGT 87 (97)
T ss_dssp EEEEEEEEETTEE
T ss_pred EEEEEEEEECCCE
Confidence 9999999998553
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.8e-12 Score=74.17 Aligned_cols=66 Identities=24% Similarity=0.430 Sum_probs=48.6
Q ss_pred ceeeeCCCcEEEEeEEe-eCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 95 DLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
...+.+|+.+.|.|.+. +.|.|. +.|.+.+.++. ... ...+ .+.|.|.+++.+|+|.|+|.|.|..
T Consensus 12 ~~~~~~G~~~~l~C~~~~g~p~p~--v~W~~~~~~~~------~~~--~~~~---~~~L~i~~v~~~D~G~Y~C~Asn~~ 78 (90)
T d1gsma1 12 VVAVALGASRQLTCRLACADRGAS--VQWRGLDTSLG------AVQ--SDTG---RSVLTVRNASLSAAGTRVCVGSCGG 78 (90)
T ss_dssp EEEEETTCCEEEEEEECCSSTTCE--EEEESSTTTTC------CEE--EESS---EEEEEECSCCGGGCEEEEEEEEETT
T ss_pred eEEEEeCCcEEEEEEecCCCCccE--EEEEEeeeeee------eee--ccCc---eeeEEcCccChhhCCcEEEEEEeCC
Confidence 46688999999999885 455554 99998765431 111 1111 2469999999999999999999983
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.5e-12 Score=76.92 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=57.5
Q ss_pred cceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCE-EE
Q psy13371 87 TAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSG-KY 165 (212)
Q Consensus 87 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y 165 (212)
|.+...+.+..+.+|+.+.|.|.+.+.|.|. +.|++++..+...... ........|.|.++..+|.| .|
T Consensus 3 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~--v~W~~~~~~~~~~~~~--------~~~~~~~~L~i~~~~~~d~G~~Y 72 (92)
T d2ifga1 3 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQ--AGWILTELEQSATVMK--------SGGLPSLGLTLANVTSDLNRKNV 72 (92)
T ss_dssp CEEEEECCSSCCBTTCCEEEEEEEECSSCCC--CCEEESCCCSSEEECC--------CCCSSEEEEEEESCCSTTTTCCE
T ss_pred CEEEEeCCCEEEeCCCEEEEeeeccCCCCcE--EEEEECCceeeeeeee--------eeeccceeEEEccccccccceEE
Confidence 3444556677899999999999999988887 9999998655322111 11112245999999999999 69
Q ss_pred EEEcccCCe
Q psy13371 166 SCSPSNADV 174 (212)
Q Consensus 166 ~C~~~n~~~ 174 (212)
+|.|.|..+
T Consensus 73 ~C~a~N~~G 81 (92)
T d2ifga1 73 TCWAENDVG 81 (92)
T ss_dssp EECCEETTE
T ss_pred EEEEEcCCC
Confidence 999999843
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3.9e-11 Score=72.14 Aligned_cols=85 Identities=9% Similarity=0.196 Sum_probs=58.5
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC-CeeEE
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA-DVASV 177 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~-~~~~~ 177 (212)
..++...+.|.+.|.|.|. +.|++++..+...... .............+.|.|.+++.+|.|.|+|.|.|. ...+.
T Consensus 14 ~~~~~~~i~~~v~G~P~P~--i~W~~~g~~l~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~ 90 (103)
T d1wwbx_ 14 TSDHHWCIPFTVKGNPKPA--LQWFYNGAILNESKYI-CTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK 90 (103)
T ss_dssp CCCCEEEEEEEEECSSCCE--EEEEETTEEECCCSSE-EEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred ccceeEEEEEEEEEeCCCE--EEEEECCEEeeeeeee-eeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEE
Confidence 3567788999999988777 9999999988422111 111222223334467999999999999999999998 44555
Q ss_pred EEEEeeccc
Q psy13371 178 YVHVLNGEY 186 (212)
Q Consensus 178 ~~~v~~~~~ 186 (212)
.+.+.....
T Consensus 91 ~~~v~V~~~ 99 (103)
T d1wwbx_ 91 QISAHFMGW 99 (103)
T ss_dssp EEEECCSCC
T ss_pred EEEEEEEeC
Confidence 555544333
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2.6e-12 Score=74.04 Aligned_cols=76 Identities=28% Similarity=0.461 Sum_probs=53.6
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
....|....+.+|+.++|.|.+.+.|.+. .+.|++++..+... . ..|.|.+++.+|+|.|.|.
T Consensus 4 It~~P~~~~v~~G~~v~L~C~~~~~~~~~-~~~~~~~~~~~~~~-----------~-----~~l~i~~v~~~d~G~Y~C~ 66 (82)
T d1f2qa1 4 VSLNPPWNRIFKGENVTLTCNGNNFFEVS-STKWFHNGSLSEET-----------N-----SSLNIVNAKFEDSGEYKCQ 66 (82)
T ss_dssp CEEESSCSEEETTCCEEEECCTTCC-----CCEEEETTEECSCC-----------S-----SEEEECSCCGGGCEEEEEE
T ss_pred EEEcCCCeEEeCCCeEEEEEEEeeeeeec-ceeeeeeeeeeecc-----------c-----ceeEECCCChhhCCcEEEE
Confidence 34456667899999999999998887654 35677887765211 1 1399999999999999999
Q ss_pred cccC-CeeEEEEEE
Q psy13371 169 PSNA-DVASVYVHV 181 (212)
Q Consensus 169 ~~n~-~~~~~~~~v 181 (212)
|.|. .+..+.+.|
T Consensus 67 a~~s~~S~~v~l~V 80 (82)
T d1f2qa1 67 HQQVNESEPVYLEV 80 (82)
T ss_dssp CTTSSCCCCEEEEE
T ss_pred ecCCCCcccEEEEE
Confidence 9987 444455554
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=4.7e-12 Score=76.19 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=52.7
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce--EEEEEEEeeeeecCCEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV--TTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~ 166 (212)
....++...+.+|+.+.|.|.+.+.|.|. +.|++.+..................... ..++|.|.++..+|+|.|+
T Consensus 4 V~t~~~~v~v~~G~~v~l~C~~~g~p~p~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~ 81 (102)
T d1f97a1 4 VYTAQSDVQVPENESIKLTCTYSGFSSPR--VEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT 81 (102)
T ss_dssp EECSCSEEEEETTCCEEEECEEESCSSEE--EEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred EEccCCcEEEeCCCEEEEEEEcCCCCCCe--EEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence 33445667899999999999999876665 9999865432211000000000000000 1125999999999999999
Q ss_pred EEcccC
Q psy13371 167 CSPSNA 172 (212)
Q Consensus 167 C~~~n~ 172 (212)
|.+.|.
T Consensus 82 C~a~n~ 87 (102)
T d1f97a1 82 CMVSEE 87 (102)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999987
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=3.6e-12 Score=75.15 Aligned_cols=70 Identities=21% Similarity=0.368 Sum_probs=48.5
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFVN 80 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 80 (212)
.|.|.+.|.|.|.+.|+|++. .+.... +.++... .+++|.|.+++.+|+|.|+|.+.|. +.......
T Consensus 20 ~l~C~v~g~p~p~v~W~~~~~-~i~~~~------~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~ 87 (92)
T d1epfa2 20 VIVCDVVSSLPPTIIWKHKGR-DVILKK------DVRFIVL-----SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 87 (92)
T ss_dssp EECCEEECSSCCEEEEEETTE-EGGGGC------CTTEEEC-----TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEE
T ss_pred EEEEEEeecCCCeEEEEEcCc-cccccc------ceeeeee-----eeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEE
Confidence 689999999999999999874 222211 1233322 2236999999999999999999884 33334444
Q ss_pred EEE
Q psy13371 81 LNV 83 (212)
Q Consensus 81 l~v 83 (212)
+.|
T Consensus 88 i~V 90 (92)
T d1epfa2 88 IQV 90 (92)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=9.3e-12 Score=73.64 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=49.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+ |.|.+.|+|++. .+... +.++... ...+.+.|.|.++..+|+|.|+|.+.+. ...+.
T Consensus 24 v~l~c~v~~-p~~~v~W~k~g~-~i~~~-------~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~c~a~n~---~~s~~ 89 (94)
T d1pd6a_ 24 IRLTVELAD-HDAEVKWLKNGQ-EIQMS-------GSKYIFE--SIGAKRTLTISQCSLADDAAYQCVVGGE---KCSTE 89 (94)
T ss_dssp EEEEEECSS-SSSCCEEEESSS-EECCC-------SSSSEEE--EETTEEEEEECSCSSSSCEEEEEEETTE---EECCE
T ss_pred EEEEEEECC-CCceEEEEEcCc-cceee-------eeeEeee--ccCCeEEeecCCCCceecEEEEEEEeeE---EEEEE
Confidence 368999965 888999999884 33221 2344444 2346778999999999999999999773 33445
Q ss_pred EEEe
Q psy13371 81 LNVV 84 (212)
Q Consensus 81 l~v~ 84 (212)
|.|.
T Consensus 90 l~V~ 93 (94)
T d1pd6a_ 90 LFVK 93 (94)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5553
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=6.9e-11 Score=70.11 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=51.5
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEE-E-cCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWY-H-HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
.+.+..+.+|+.+.|.|.+.+.|.|. +.|+ + .+.... ......... ......+|.|.++..+|+|.|+|.|
T Consensus 7 ~~~~~~v~~G~~v~l~C~~~g~p~p~--~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a 79 (96)
T d2c9aa1 7 RIQNVEVNAGQFATFQCSAIGRTVAG--DRLWLQGIDVRDA---PLKEIKVTS--SRRFIASFNVVNTTKRDAGKYRCMI 79 (96)
T ss_dssp CCCCEEECSSSCEEEEEEEESCCCSS--CEEEEEETTBCCC---CEEEEEEEE--TTEEEEEEEECSCCGGGCSEEEEEE
T ss_pred ccCCEEEeCCCEEEEEEEEeecCCCc--EEEEEeeeeeeee---cCCceeEEE--eecCceEEEECCCCHHHCeEEEEEE
Confidence 46778899999999999999988776 3332 2 222211 000111111 1222346999999999999999999
Q ss_pred ccCCee
Q psy13371 170 SNADVA 175 (212)
Q Consensus 170 ~n~~~~ 175 (212)
.|+.+.
T Consensus 80 ~N~~G~ 85 (96)
T d2c9aa1 80 RTEGGV 85 (96)
T ss_dssp EETTEE
T ss_pred EeCCCe
Confidence 998543
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.1e-12 Score=74.55 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=48.4
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|.+..+.+|+.+.|.|.+.|.|.|. +.|++++..+... +.+.+++.+|+|.|+|.|.|.
T Consensus 11 p~~~~~~~G~~~~l~C~a~G~P~P~--v~W~k~g~~~~~~-------------------~~~~~v~~~d~G~Y~C~A~N~ 69 (84)
T d2oz4a3 11 PGNWTWPENSQQTPMCQAWGNPLPE--LKCLKDGTFPLPI-------------------GESVTVTRDLEGTYLCRARST 69 (84)
T ss_dssp CSEEEEETTCEECCCCCCEEESCCE--EEEEETTTEECCT-------------------TSCEECCGGGCEEEEEEEEET
T ss_pred CccEEEeCCCEEEEEEEEeEcCccE--EEEEEeeccceee-------------------eeeeccccCCCCEEEEEEEcC
Confidence 4567889999999999999998886 9999998765211 223456789999999999998
Q ss_pred C
Q psy13371 173 D 173 (212)
Q Consensus 173 ~ 173 (212)
.
T Consensus 70 ~ 70 (84)
T d2oz4a3 70 Q 70 (84)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=3.7e-12 Score=77.28 Aligned_cols=76 Identities=9% Similarity=0.045 Sum_probs=51.9
Q ss_pred eEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEE-eeC----CCCeEEEEEcccCCCCCEEEEEEecCC-Ccee
Q psy13371 3 HQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAI-HRR----EGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRS 76 (212)
Q Consensus 3 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~-~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~ 76 (212)
+.|.+.|.|.|.+.|++++. .+... .++... .+. ......|.|.++..+|+|.|+|.+.|. +..+
T Consensus 20 i~~~v~G~P~P~v~W~~ng~--~l~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~ 90 (107)
T d1he7a_ 20 IPFSVDGQPAPSLRWLFNGS--VLNET-------SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 90 (107)
T ss_dssp EEEEECCSSCCEEEEEETTE--ECCCC-------SSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEE
T ss_pred EEEEEEEecCCeEEEEEeee--EccCc-------cceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEE
Confidence 45699999999999999873 22211 111111 111 112357999999999999999999996 4556
Q ss_pred EEEEEEEeccc
Q psy13371 77 FFVNLNVVVPT 87 (212)
Q Consensus 77 ~~~~l~v~~~~ 87 (212)
..+.|.|..+|
T Consensus 91 ~~i~v~v~~~P 101 (107)
T d1he7a_ 91 ASIMAAFMDNP 101 (107)
T ss_dssp EEEEECCCSCT
T ss_pred EEEEEEEEcCC
Confidence 66677666555
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.7e-11 Score=71.55 Aligned_cols=70 Identities=21% Similarity=0.414 Sum_probs=52.6
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+.+|+.+.|.|.+. .|.|. +.|++++..+.... ........+.. ..|.|.++..+|+|.|+|.|.|.
T Consensus 15 ~~~v~~G~~v~l~c~v~-~p~~~--v~W~k~g~~i~~~~---~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~c~a~n~ 84 (94)
T d1pd6a_ 15 AYQVSKGHKIRLTVELA-DHDAE--VKWLKNGQEIQMSG---SKYIFESIGAK--RTLTISQCSLADDAAYQCVVGGE 84 (94)
T ss_dssp EEEEETTSCEEEEEECS-SSSSC--CEEEESSSEECCCS---SSSEEEEETTE--EEEEECSCSSSSCEEEEEEETTE
T ss_pred CEEECcCCeEEEEEEEC-CCCce--EEEEEcCccceeee---eeEeeeccCCe--EEeecCCCCceecEEEEEEEeeE
Confidence 45688999999999984 56565 99999999884332 22233333332 46999999999999999999885
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.1e-11 Score=72.61 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=48.7
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-ceeEE
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~ 78 (212)
+.|.|.+. +.|.|.+.|++.+. .+.. + ........|+|.+++.+|+|.|+|.+.++. ..+..
T Consensus 21 ~~l~C~~~~g~p~p~v~W~~~~~-~~~~----------~-----~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s 84 (90)
T d1gsma1 21 RQLTCRLACADRGASVQWRGLDT-SLGA----------V-----QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT 84 (90)
T ss_dssp EEEEEEECCSSTTCEEEEESSTT-TTCC----------E-----EEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEEEEecCCCCccEEEEEEeee-eeee----------e-----eccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEE
Confidence 36899885 78999999998664 1111 0 012245689999999999999999999963 45566
Q ss_pred EEEEE
Q psy13371 79 VNLNV 83 (212)
Q Consensus 79 ~~l~v 83 (212)
+.|.|
T Consensus 85 ~~l~V 89 (90)
T d1gsma1 85 VQLLV 89 (90)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66655
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.2e-11 Score=71.35 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=50.0
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEEE
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVNL 81 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l 81 (212)
.|.|.+. .|.|.+.|+|++. .+.... ..++... ..++.+.|+|.+++.+|+|.|+|.+.+. ...+.|
T Consensus 19 ~l~C~v~-~p~~~v~W~k~~~-~~~~~~------~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~---~~~a~l 85 (90)
T d1x44a1 19 ELECEVS-EDDANVKWFKNGE-EIIPGP------KSRYRIR--VEGKKHILIIEGATKADAAEYSVMTTGG---QSSAKL 85 (90)
T ss_dssp EEEEECS-SSSCCCEEEETTE-ECCCST------TCSEEEE--EETTEEEEEEEEECTTTCSEEEEEETTE---EEEEEE
T ss_pred EEEEEEC-CCCceEEEEEeec-ccCCCC------CccEEEE--EeCCccEEEECccccccCEEEEEEEecc---eEEEEE
Confidence 6899995 5888999999873 222211 2344444 3446788999999999999999999873 445666
Q ss_pred EEe
Q psy13371 82 NVV 84 (212)
Q Consensus 82 ~v~ 84 (212)
.|.
T Consensus 86 ~V~ 88 (90)
T d1x44a1 86 SVD 88 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=3.3e-12 Score=77.32 Aligned_cols=79 Identities=15% Similarity=0.328 Sum_probs=52.8
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce--EEEEEEEeeeeecCCEEEEEEc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV--TTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
.++...+.+|+.+.|.|.+.+.|.|. +.|++++..+...............+.. ..+.|.|.++..+|+|.|+|.|
T Consensus 10 ~~~~v~v~~g~~v~L~C~~~g~p~p~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 87 (105)
T d1nbqa1 10 SEPEVRIPENNPVKLSCAYSGFSSPR--VEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMV 87 (105)
T ss_dssp SCSBCCEETTCCCEEECEEESCSSEE--EEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEE
T ss_pred CCCeEEEeCCCeEEEEEEeCCCCCCe--eEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEE
Confidence 34556789999999999999887665 9999977554322111111000000000 1125999999999999999999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.|+
T Consensus 88 ~n~ 90 (105)
T d1nbqa1 88 SEE 90 (105)
T ss_dssp EET
T ss_pred EEC
Confidence 997
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=7.7e-13 Score=76.46 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=45.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 79 (212)
+.|.|.+.|.|.|.+.|+|++. .+.+. +.+.+++.+|+|.|.|.+.|. +..+..+
T Consensus 22 ~~l~C~a~G~P~P~v~W~k~g~-~~~~~-----------------------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~ 77 (84)
T d2oz4a3 22 QTPMCQAWGNPLPELKCLKDGT-FPLPI-----------------------GESVTVTRDLEGTYLCRARSTQGEVTREV 77 (84)
T ss_dssp ECCCCCCEEESCCEEEEEETTT-EECCT-----------------------TSCEECCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeEcCccEEEEEEeec-cceee-----------------------eeeeccccCCCCEEEEEEEcCCCEEEEEE
Confidence 3689999999999999999773 22221 123467889999999999996 4556667
Q ss_pred EEEEec
Q psy13371 80 NLNVVV 85 (212)
Q Consensus 80 ~l~v~~ 85 (212)
.|+|..
T Consensus 78 ~l~V~~ 83 (84)
T d2oz4a3 78 TVNVLS 83 (84)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 777754
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=9.3e-12 Score=78.18 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=54.2
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCC-------------------------CceeEEeecCc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR-------------------------GGVSVITEKGE 146 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~-------------------------~~~~~~~~~~~ 146 (212)
.+....+..|+.++|.|.+.|.|.|. +.|++++..+...... ..+.......
T Consensus 15 ~~~~v~v~~G~~v~L~C~v~G~P~p~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~- 91 (130)
T d1gxea_ 15 IPDTIVVVAGNKLRLDVPISGDPAPT--VIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK- 91 (130)
T ss_dssp CCCEEEESSSSCCCCEEECCSBSCCE--EEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET-
T ss_pred CCCCEEEEcCCeEEEEEEEEEecCCe--EEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECC-
Confidence 35577899999999999999887776 9999987654211100 0011111111
Q ss_pred eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 147 VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 147 ~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+.|.|.++..+|+|.|+|.|.|.
T Consensus 92 -~~~~L~I~~v~~~D~G~Y~C~a~N~ 116 (130)
T d1gxea_ 92 -DRSIFTVEGAEKEDEGVYTVTVKNP 116 (130)
T ss_dssp -TEEEEECSCCCTTTCEEEEEEEECS
T ss_pred -CEEEEEECcCChhcCEEEEEEEEEC
Confidence 1256999999999999999999998
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.24 E-value=2.7e-12 Score=75.14 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=58.7
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
.+.+..+.+|+.+.|.|.+ +.|.|. +.|+++|..+.. ........++.. ..|.|.++..+|+|.|+|.|.|
T Consensus 7 ~l~d~~v~~G~~~~~~c~v-s~p~~~--v~W~k~g~~i~~----~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~c~a~n 77 (89)
T d1tiua_ 7 PLYGVEVFVGETAHFEIEL-SEPDVH--GQWKLKGQPLTA----SPDCEIIEDGKK--HILILHNCQLGMTGEVSFQAAN 77 (89)
T ss_dssp CCCCEEEETTSCCCEEEBC-SSSSCC--CBCCSSSCCCCS----SSSCEEEECSSC--EEEECCSCCSCCCSEECCBCSS
T ss_pred CCcCEEEeCCCcEEEEEEE-CCCCcE--EEEEEeeeeccc----ceeEEEEeecee--EEEEEcCCChhcCEEEEEEECc
Confidence 3467889999999999998 456666 899999988742 223344444433 4599999999999999999988
Q ss_pred CCeeEEEEEE
Q psy13371 172 ADVASVYVHV 181 (212)
Q Consensus 172 ~~~~~~~~~v 181 (212)
... ++.+.|
T Consensus 78 ~~~-sa~l~V 86 (89)
T d1tiua_ 78 AKS-AANLKV 86 (89)
T ss_dssp CBC-CEEEEE
T ss_pred eEE-EEEEEE
Confidence 632 344444
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=1.4e-11 Score=73.16 Aligned_cols=69 Identities=23% Similarity=0.408 Sum_probs=51.3
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+..+.+|+.+.|.|.+.+ +.+ .+.|++++..+... .+....... .+|.|.++..+|.|.|+|.|.|.
T Consensus 10 ~~~~~v~~g~~v~l~C~~~~-~~~--~v~W~~~~~~l~~~----~~~~~~~~~----~~L~I~~v~~~d~G~Y~C~a~N~ 78 (96)
T d1l6za2 10 VTNTTVKELDSVTLTCLSND-IGA--NIQWLFNSQSLQLT----ERMTLSQNN----SILRIDPIKREDAGEYQCEISNP 78 (96)
T ss_dssp CSCSEECTTSCEEEEECCCC-SSC--EEEEEETTEECCCC----TTEEEETTT----TEEEECSCCGGGCEEEEEEEESS
T ss_pred cCceEEeCCCeEEEEEccCC-CCC--CEEEEEeeeecccc----cceeccCCc----eEEEEeccchhhceEEEEEEEeC
Confidence 34567899999999999854 334 49999999887322 222232222 24999999999999999999997
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.7e-11 Score=72.60 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=53.2
Q ss_pred CeeEeeeCCCCCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccC-CCCCEEEEEEecCC-CceeE
Q psy13371 1 MLHQRKLKGLLPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQ-KRDAGVYECQLSTQ-PVRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~-~~~~~ 77 (212)
+.|.|.+.|.|.| .+.|+|.+........ ...+.|+.+. .......|.|.++. .+|+|.|+|.+.|. +..+.
T Consensus 20 v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~---~~~~~~~~~~--~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~ 94 (101)
T d3b5ha1 20 AMLVCKSESVPPVTDWAWYKITDSEDKALM---NGSESRFFVS--SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 94 (101)
T ss_dssp EEEEEECCCSSCCCEEEEEECCSSSCEECC---TTGGGTEEEE--EETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEE
T ss_pred EEEEEEEEecCCeeEEEEEeccceeeeecc---cCCCceEEEE--eCCCEEEEEEeccccccCCEEEEEEEEECCCEEEE
Confidence 3689999999877 7999987632111110 0123466655 33456789999998 57999999999996 45555
Q ss_pred EEEEEE
Q psy13371 78 FVNLNV 83 (212)
Q Consensus 78 ~~~l~v 83 (212)
.+.|.|
T Consensus 95 ~~~L~V 100 (101)
T d3b5ha1 95 IITLRV 100 (101)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666655
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=2.3e-11 Score=71.14 Aligned_cols=67 Identities=24% Similarity=0.226 Sum_probs=48.4
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+. +.|.|.+.|+|++. .+.. .+... .+..|+|.+++.+|+|.|+|.+.|. +..+..
T Consensus 20 ~~l~C~~~~~~p~~~v~W~k~~~-~~~~---------~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 83 (89)
T d1gl4b_ 20 VTFICTAKSKSPAYTLVWTRLHN-GKLP---------SRAMD------FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT 83 (89)
T ss_dssp EEEEEEEEESSSCCEEEEEEGGG-BCCC---------TTEEE------ETTEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred EEEEEEccCCCCCCEEEEecCCc-eeec---------cccEe------eceEEEEecCCcccCEEEEEEEEECCCEEEEE
Confidence 36899997 67889999999874 2221 12111 1237999999999999999999996 455556
Q ss_pred EEEEE
Q psy13371 79 VNLNV 83 (212)
Q Consensus 79 ~~l~v 83 (212)
+.|.|
T Consensus 84 ~~l~V 88 (89)
T d1gl4b_ 84 ATLHV 88 (89)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66655
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=5.3e-12 Score=74.32 Aligned_cols=67 Identities=27% Similarity=0.428 Sum_probs=51.5
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+..+.+|+++.|.|.+.+ +.| .+.|+++++.+.... .......++. |.|.++..+|+|.|+|.|.|.
T Consensus 6 ~~~~~~G~~~~l~C~~~g-~~~--~v~W~~~g~~l~~~~---~~~~~~~~~~-----L~I~~v~~~DsG~Y~C~A~n~ 72 (92)
T d1olza1 6 QHFFKHGGTAELKCSQKS-NLA--RVFWKFQNGVLKAES---PKYGLMGRKN-----LLIFNLSEGDSGVYQCLSEER 72 (92)
T ss_dssp EEEEETTSCEEECCCCSC-TTC--EEEEEESSSBCCCCS---SSBCCTTTTC-----EEECSCCGGGCEEEEEEEEEE
T ss_pred heeEeCCCEEEEEEEeec-cCC--ceeeecCcccceeee---eeeecceeeE-----EEECCCCHHHCcEEEEEEEEc
Confidence 356889999999999976 345 499999998875332 2233333443 999999999999999999986
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=4.6e-11 Score=71.73 Aligned_cols=78 Identities=13% Similarity=0.231 Sum_probs=57.1
Q ss_pred ccceeeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEE
Q psy13371 86 PTAEILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGK 164 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 164 (212)
|+.+...+....+.+|+.++|.|.+.+. |.|...+.|++++..+...... .....+.|.|.....+|.|.
T Consensus 4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~---------~~~~~s~l~i~~~~~dd~g~ 74 (103)
T d1iama1 4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV---------GEPAEVTTTVLVRRDHHGAQ 74 (103)
T ss_dssp CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC---------TTTEEEEEEEECCSSCSSCE
T ss_pred CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc---------cccceEEEEEeeehhHCCCE
Confidence 3444455555678899999999999864 4454568899999888543221 11233569999889999999
Q ss_pred EEEEcccC
Q psy13371 165 YSCSPSNA 172 (212)
Q Consensus 165 y~C~~~n~ 172 (212)
|+|.|.|.
T Consensus 75 ytC~A~n~ 82 (103)
T d1iama1 75 FSCRTELD 82 (103)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEeC
Confidence 99999997
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2e-11 Score=73.96 Aligned_cols=85 Identities=18% Similarity=0.287 Sum_probs=54.0
Q ss_pred CceeeeCCCcEE---EEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEee---cCceEEEEEEEeeeeecCCEEEEE
Q psy13371 94 PDLHVDEGSTIN---LTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITE---KGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 94 ~~~~~~~g~~~~---l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.+..+..|...+ +.|.+.|.|.|. +.|++++..+..... ....... ......+.|.|.++..+|+|.|+|
T Consensus 5 ~~~~~~~g~~~~~~ci~~~v~G~P~P~--v~W~~ng~~l~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 80 (107)
T d1he7a_ 5 ASVQLHTAVEMHHWCIPFSVDGQPAPS--LRWLFNGSVLNETSF--IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL 80 (107)
T ss_dssp CCCCCCCCCCCCEEEEEEEECCSSCCE--EEEEETTEECCCCSS--EEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEE
T ss_pred CEeEECCCeEEEEEEEEEEEEEecCCe--EEEEEeeeEccCccc--eeeeeeeeeeeeeccceEEEECcccHHHCcEEEE
Confidence 344455555555 555888887776 999999998743221 1111111 122234669999999999999999
Q ss_pred EcccCC-eeEEEEEEe
Q psy13371 168 SPSNAD-VASVYVHVL 182 (212)
Q Consensus 168 ~~~n~~-~~~~~~~v~ 182 (212)
.|.|.. .....+.+.
T Consensus 81 ~A~N~~G~~~~~i~v~ 96 (107)
T d1he7a_ 81 LAANPFGQASASIMAA 96 (107)
T ss_dssp EEEETTEEEEEEEEEC
T ss_pred EEEeCCCEEEEEEEEE
Confidence 999983 333444443
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.7e-11 Score=72.79 Aligned_cols=83 Identities=22% Similarity=0.366 Sum_probs=56.2
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEE-e-----ecCceEEEEEEEeeeeecCCE-EEEEE
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI-T-----EKGEVTTSYLLIQQAELKDSG-KYSCS 168 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~l~i~~~~~~d~g-~y~C~ 168 (212)
..+..|+.+.|.|.+.+.|.|. +.|.+++..+............ . .......+.|.|.+++.+|.| .|+|.
T Consensus 12 i~v~~G~~v~l~C~v~g~P~p~--i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~ 89 (107)
T d1iray3 12 MEVDLGSQIQLICNVTGQLSDI--AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF 89 (107)
T ss_dssp EECCTTCCEEEEEEEEECTTCE--EEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEE
T ss_pred EEEeCCCEEEEEEEeccCCCCe--EEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEE
Confidence 4567899999999999998776 9999999876422211110000 0 011123457999999999999 59999
Q ss_pred cccCCe-eEEEEE
Q psy13371 169 PSNADV-ASVYVH 180 (212)
Q Consensus 169 ~~n~~~-~~~~~~ 180 (212)
|.|..+ .+..+.
T Consensus 90 A~N~~G~~~~~i~ 102 (107)
T d1iray3 90 AKNTHGIDAAYIQ 102 (107)
T ss_dssp EECSSCEEEEEEE
T ss_pred EEeCCCeEEEEEE
Confidence 999843 333333
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3.2e-11 Score=72.24 Aligned_cols=66 Identities=20% Similarity=0.391 Sum_probs=50.0
Q ss_pred eeeeCCCcEEEEe------EEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 96 LHVDEGSTINLTC------SIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 96 ~~~~~g~~~~l~C------~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
..+..|....|.| .+.++|.|. +.|++++.++... .......++ .|.|.++..+|+|.|+|.|
T Consensus 9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~--i~W~kdg~~l~~~----~~~~~~~~~-----~L~I~~v~~~D~G~Y~C~a 77 (103)
T d1iray2 9 QKLPVAGDGGLVCPYMEFFKNENNELPK--LQWYKDCKPLLLD----NIHFSGVKD-----RLIVMNVAEKHRGNYTCHA 77 (103)
T ss_dssp EEEESSSCEEEECTTGGGGCBTTTBCCC--CEEEETTEECCCC----SSSEEEETT-----EEEESSCCGGGCEEEEEEE
T ss_pred EEEecCCCEEEEcCCccccccCCCCCCE--EEEEECCccccCC----CcEEEecCC-----EEEEcccccccCcEEEEEE
Confidence 3578899999999 445666666 9999999988432 122333333 3999999999999999999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.|.
T Consensus 78 ~n~ 80 (103)
T d1iray2 78 SYT 80 (103)
T ss_dssp EEE
T ss_pred EEC
Confidence 985
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3.4e-12 Score=78.56 Aligned_cols=91 Identities=25% Similarity=0.345 Sum_probs=61.6
Q ss_pred EEEecccceeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 81 LNVVVPTAEILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 81 l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
|+|..||. +..+....+.+|+.+.|.|.+.+.+ |...+.|++++..+....................+.|.|.++..+
T Consensus 2 L~V~~Pp~-i~~~~~~~~~~G~~~~l~C~v~~~~-p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~ 79 (115)
T d2crya1 2 LTVNGPPI-ISSTQTQHALHGEKGQIKCFIRSTP-PPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA 79 (115)
T ss_dssp CCCCSSCC-EEEECCCCCCTTSCCCCCEEECCSS-CCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred eEEecCCE-EecCCCEEEecCCEEEEEEEeecCC-CeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchh
Confidence 34555553 3445556788999999999998764 333589999998774332222122222233334467999999999
Q ss_pred C-CEEEEEEcccCC
Q psy13371 161 D-SGKYSCSPSNAD 173 (212)
Q Consensus 161 d-~g~y~C~~~n~~ 173 (212)
| +|.|+|.|.|..
T Consensus 80 D~~G~Y~C~A~N~~ 93 (115)
T d2crya1 80 DFQTIYNCTAWNSF 93 (115)
T ss_dssp HHHSCEEEEEECSS
T ss_pred cCCeEEEEEEEECC
Confidence 8 699999999983
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.7e-11 Score=72.22 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=43.5
Q ss_pred CeeEeeeCCCCC-ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCcee
Q psy13371 1 MLHQRKLKGLLP-TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 76 (212)
+.|.|.+.+.|. +.|.|+|++. .+.. . .+.... .+.+|.|.+++.+|+|.|+|.+.+....+
T Consensus 24 v~L~C~~~g~~~~~~i~W~k~~~-~l~~-~-------~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~~~t 86 (93)
T d1n26a1 24 VTLTCPGVEPEDNATVHWVLRKP-AAGS-H-------PSRWAG-----MGRRLLLRSVQLHDSGNYSCYRAGRPAGT 86 (93)
T ss_dssp EEEECTTSCTTCCSEEEEEEECS-SSSC-C-------CEEEEE-----ESSEEEECSCCGGGCEEEEEESSSSCSCE
T ss_pred EEEEEEeecCCCCceEEEEEccc-cccc-e-------eeEEec-----CCCEEEECCCChhcCEEEEEEECCccccE
Confidence 369999999765 6899999874 2221 1 122211 12379999999999999999998754333
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=4.6e-11 Score=71.74 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=50.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeee--cce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Ccee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTV--GSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~ 76 (212)
+.|.|.++|.|.|.+.|+|.+....... ... ......+.... +.+|+|.+++.+|+|.|+|.+.+. +...
T Consensus 19 v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~ 92 (102)
T d1f97a1 19 IKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS------SSGITFSSVTRKDNGEYTCMVSEEGGQNY 92 (102)
T ss_dssp EEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE------TTEEEESCCCGGGCEEEEEEEEETTSSSE
T ss_pred EEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEec------CCEEEEeECCccCCEEEEEEEEECCCCEE
Confidence 4699999999999999999775332221 111 11112333332 237999999999999999999985 3444
Q ss_pred EEEEEEE
Q psy13371 77 FFVNLNV 83 (212)
Q Consensus 77 ~~~~l~v 83 (212)
..+.++|
T Consensus 93 ~~~~v~v 99 (102)
T d1f97a1 93 GEVSIHL 99 (102)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4444443
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.20 E-value=1.4e-11 Score=71.88 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=48.1
Q ss_pred CeeEeeeCC-CCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeE
Q psy13371 1 MLHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~ 77 (212)
+.|.|.+.+ .|.+.+.|+|++. .+... ..+..|.|.+++.+|+|.|.|.+.+.. ..+.
T Consensus 18 v~L~C~~~~~~p~~~~~W~k~g~--~~~~~-----------------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~ 78 (88)
T d2fcba2 18 IVLRCHSWKDKPLVKVTFFQNGK--SKKFS-----------------RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSK 78 (88)
T ss_dssp EEEEEEEGGGCCCEEEEEEETTE--EEEEE-----------------SSCCEEEETTCCGGGCEEEEEEEEETTEEEECC
T ss_pred EEEEEEecCCCCCcEEEEEeecc--ccccc-----------------ccccccccCccCHHHCCeEEEEEEeCCCCEEee
Confidence 479999964 5778999999873 22111 123378999999999999999999863 2345
Q ss_pred EEEEEEecc
Q psy13371 78 FVNLNVVVP 86 (212)
Q Consensus 78 ~~~l~v~~~ 86 (212)
.+.|.|..|
T Consensus 79 ~v~l~V~~P 87 (88)
T d2fcba2 79 PVTITVQAP 87 (88)
T ss_dssp CEEEEECCC
T ss_pred eEEEEEeCC
Confidence 567777654
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=1.7e-11 Score=72.85 Aligned_cols=73 Identities=18% Similarity=0.383 Sum_probs=52.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-C-ceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-P-VRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~-~~~~~ 78 (212)
+.|.|.+.+ +.+.+.|++++. .+.. +.++.... ....|.|.+++.+|+|.|.|.+.|. + ..+..
T Consensus 21 v~l~C~~~~-~~~~v~W~~~~~-~l~~--------~~~~~~~~----~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~ 86 (96)
T d1l6za2 21 VTLTCLSND-IGANIQWLFNSQ-SLQL--------TERMTLSQ----NNSILRIDPIKREDAGEYQCEISNPVSVRRSNS 86 (96)
T ss_dssp EEEEECCCC-SSCEEEEEETTE-ECCC--------CTTEEEET----TTTEEEECSCCGGGCEEEEEEEESSSCCEECCC
T ss_pred EEEEEccCC-CCCCEEEEEeee-eccc--------ccceeccC----CceEEEEeccchhhceEEEEEEEeCCCCeEEEe
Confidence 468999977 457999999873 2222 33444432 3347999999999999999999986 2 33456
Q ss_pred EEEEEeccc
Q psy13371 79 VNLNVVVPT 87 (212)
Q Consensus 79 ~~l~v~~~~ 87 (212)
+.|+|.++|
T Consensus 87 ~~L~V~~~P 95 (96)
T d1l6za2 87 IKLDIIFDP 95 (96)
T ss_dssp CEEEECCSC
T ss_pred EEEEEEcCC
Confidence 788887655
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=5.1e-12 Score=77.12 Aligned_cols=72 Identities=25% Similarity=0.375 Sum_probs=48.1
Q ss_pred eeeCCCcEEEEeEEe-eCCCCCceEEEEEcCeEEEeeCCCCce----eEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 97 HVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGV----SVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
.+..|+.+.|.|.+. +.|.+. +.|++++..+......... ....... ..+.|.|.+++.+|+|.|+|.|.|
T Consensus 13 ~v~~G~~v~L~C~~~~g~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~I~~v~~~D~G~Y~C~a~N 88 (110)
T d1f97a2 13 SVTIGNRAVLTCSEHDGSPPSE--YSWFKDGISMLTADAKKTRAFMNSSFTIDP--KSGDLIFDPVTAFDSGEYYCQAQN 88 (110)
T ss_dssp EEETTSCEEEEEECSCCBSCCE--EEEEETTEESBC-----CBSCSSSCEEECT--TTCCEEESSCCGGGCEEEEEEEEC
T ss_pred EEecCCeEEEEEEeecCCCCCE--EEEEeCCeEecCCCceeEEeecCceEEEee--cccceEECCCCccCCEEEEEEEEE
Confidence 578899999999985 555554 9999998866332211100 0000110 112499999999999999999999
Q ss_pred C
Q psy13371 172 A 172 (212)
Q Consensus 172 ~ 172 (212)
.
T Consensus 89 ~ 89 (110)
T d1f97a2 89 G 89 (110)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.19 E-value=1e-11 Score=72.56 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=46.8
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeE
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSF 77 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~ 77 (212)
+.|.|.+. +.|.+.+.|+|++. .+.... ....|.|.+++.+|+|.|.|.+.+.. ..+.
T Consensus 20 v~L~C~~~~~~p~~~~~W~kng~-~~~~~~------------------~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~ 80 (89)
T d1fnla2 20 IHLRCHSWKNTALHKVTYLQNGK-DRKYFH------------------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE 80 (89)
T ss_dssp EEEEEEECTTCCCEEEEEEETTE-EEEEEE------------------ECCCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred EEEEEEecCCCCCcEEEEEEccc-ccceec------------------cccccEECccceeccceEEEEEEeCCCCeEEe
Confidence 47999987 45778999999873 221110 12268899999999999999999853 2345
Q ss_pred EEEEEEec
Q psy13371 78 FVNLNVVV 85 (212)
Q Consensus 78 ~~~l~v~~ 85 (212)
.+.|+|.+
T Consensus 81 ~v~itV~E 88 (89)
T d1fnla2 81 TVNITITQ 88 (89)
T ss_dssp CEEEEEEC
T ss_pred eEEEEEEe
Confidence 66777654
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.19 E-value=1.6e-11 Score=74.17 Aligned_cols=71 Identities=25% Similarity=0.373 Sum_probs=52.3
Q ss_pred CceeeeCCCcEEEEeEE-eeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 94 PDLHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~-~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
....+.+|+.+.|.|.+ .+.|.|. +.|++++..+..... .........+ .|.|.++..+|+|.|+|.|.|.
T Consensus 12 ~~v~v~eG~~~~l~C~~~~~~p~~~--v~W~k~g~~~~~~~~-~~~~~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~ 83 (105)
T d1cs6a2 12 DPVKITEGWGVMFTCSPPPHYPALS--YRWLLNEFPNFIPAD-GRRFVSQTTG-----NLYIAKTEASDLGNYSCFATSH 83 (105)
T ss_dssp CCEEEETTSCEEECCCCCSEESCCE--EEEEESSTTCBCCCC-SSEEECTTTC-----CEEESSCCGGGCEEEEEEEEEE
T ss_pred CCEEEeCCCeEEEEEEccCCCCCCE--EEEEEeecccccccc-ceeeeecCCC-----EEeecccccccCcEEEEEEEEC
Confidence 34679999999999997 4665555 999999876643221 1222222333 3999999999999999999987
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=3e-11 Score=72.27 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=57.2
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+......+|+.+.|.|.+... .|...+.|++++..+........+ .....+ .|.|.++..+|+|.|+|.+.|.
T Consensus 9 ~~~~~~~~~e~~~l~C~~~~~-~~~~~i~W~k~~~~~~~~~~~~~~-~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~ 81 (101)
T d1iray1 9 KIILVSSANEIDVRPCPLNPN-EHKGTITWYKDDSKTPVSTEQASR-IHQHKE-----KLWFVPAKVEDSGHYYCVVRNS 81 (101)
T ss_dssp CCCEEEETTSCEEECCCCCGG-GCSSEEEEECSSTTSBCCCCTTSS-EEEETT-----EEEETTCCGGGCEEEEEEEEET
T ss_pred CcEEEEeCCCeEEEEeeCCCC-CCCceEEEEECCcccccccccceE-EeccCC-----EEEeccceecCCEEEEEEEECC
Confidence 344567889999999988643 234459999988655333222222 112222 4999999999999999999998
Q ss_pred ---CeeEEEEEEeec
Q psy13371 173 ---DVASVYVHVLNG 184 (212)
Q Consensus 173 ---~~~~~~~~v~~~ 184 (212)
...++.+.|+..
T Consensus 82 ~g~~~~~~~L~V~~~ 96 (101)
T d1iray1 82 SYCLRIKISAKFVEN 96 (101)
T ss_dssp TEEEEEEEEEEEECC
T ss_pred CCeEEEEEEEEEEeC
Confidence 344566666543
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.5e-11 Score=74.36 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=49.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeee--cce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Ccee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTV--GSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~ 76 (212)
+.|.|.+.|.|.|.+.|+|++....... ... ......|.... +.+|.|.+++.+|+|.|+|.+.|. +...
T Consensus 22 v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~ 95 (105)
T d1nbqa1 22 VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL------PTGITFKSVTREDTGTYTCMVSEEGGNSY 95 (105)
T ss_dssp CEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE------TTEEECSCCCTTSCSEEEEEEEETTSSCE
T ss_pred EEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeec------CceEEEecccccceeeEEEEEEECCCCEE
Confidence 4799999999999999999774222111 100 00112233332 237999999999999999999985 3344
Q ss_pred EEEEEE
Q psy13371 77 FFVNLN 82 (212)
Q Consensus 77 ~~~~l~ 82 (212)
..+.++
T Consensus 96 ~~~~v~ 101 (105)
T d1nbqa1 96 GEVKVK 101 (105)
T ss_dssp ECCEEE
T ss_pred EEEEEE
Confidence 443443
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=2.2e-11 Score=74.24 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=49.5
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cc--ee
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PV--RS 76 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~--~~ 76 (212)
+.|.|.+. |.|.+.+.|+|++. .+................. .......|.|.+++.+|+|.|+|.+.|. +. .+
T Consensus 20 v~L~C~~~~g~p~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s 96 (110)
T d1f97a2 20 AVLTCSEHDGSPPSEYSWFKDGI-SMLTADAKKTRAFMNSSFT--IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRS 96 (110)
T ss_dssp EEEEEECSCCBSCCEEEEEETTE-ESBC-----CBSCSSSCEE--ECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEEC
T ss_pred EEEEEEeecCCCCCEEEEEeCCe-EecCCCceeEEeecCceEE--EeecccceEECCCCccCCEEEEEEEEECCCcEEEE
Confidence 46999985 78999999999773 2222211111111111111 1123447899999999999999999985 32 23
Q ss_pred EEEEEEEe
Q psy13371 77 FFVNLNVV 84 (212)
Q Consensus 77 ~~~~l~v~ 84 (212)
..+.|.|.
T Consensus 97 ~~v~l~V~ 104 (110)
T d1f97a2 97 EAAHMDAV 104 (110)
T ss_dssp CCEEEEEE
T ss_pred EEEEEEEE
Confidence 45666664
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.16 E-value=7.3e-12 Score=73.28 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=50.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+. .|.|.+.|+|++. .+.. ++++.+. ..++.+.|.|.+++.+|+|.|+|.+.+. ...+.
T Consensus 19 ~~~~c~vs-~p~~~v~W~k~g~-~i~~--------~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~c~a~n~---~~sa~ 83 (89)
T d1tiua_ 19 AHFEIELS-EPDVHGQWKLKGQ-PLTA--------SPDCEII--EDGKKHILILHNCQLGMTGEVSFQAANA---KSAAN 83 (89)
T ss_dssp CCEEEBCS-SSSCCCBCCSSSC-CCCS--------SSSCEEE--ECSSCEEEECCSCCSCCCSEECCBCSSC---BCCEE
T ss_pred EEEEEEEC-CCCcEEEEEEeee-eccc--------ceeEEEE--eeceeEEEEEcCCChhcCEEEEEEECce---EEEEE
Confidence 46899984 6889999999874 3322 4566665 3456779999999999999999999774 23455
Q ss_pred EEEe
Q psy13371 81 LNVV 84 (212)
Q Consensus 81 l~v~ 84 (212)
|.|.
T Consensus 84 l~V~ 87 (89)
T d1tiua_ 84 LKVK 87 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=5.5e-11 Score=71.10 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=52.4
Q ss_pred CeeEeeeC-CCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLK-GLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+. +.|.+.|.|+|++........ ...++... +.+|.|.+++.+|+|.|+|.+.|. +.....
T Consensus 20 ~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~-----~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~ 88 (101)
T d1iray1 20 DVRPCPLNPNEHKGTITWYKDDSKTPVSTE-----QASRIHQH------KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK 88 (101)
T ss_dssp EEECCCCCGGGCSSEEEEECSSTTSBCCCC-----TTSSEEEE------TTEEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEEeeCCCCCCCceEEEEECCcccccccc-----cceEEecc------CCEEEeccceecCCEEEEEEEECCCCeEEEE
Confidence 36899885 679999999998743222211 11232222 237999999999999999999986 455666
Q ss_pred EEEEEecc
Q psy13371 79 VNLNVVVP 86 (212)
Q Consensus 79 ~~l~v~~~ 86 (212)
+.|.|...
T Consensus 89 ~~L~V~~~ 96 (101)
T d1iray1 89 ISAKFVEN 96 (101)
T ss_dssp EEEEEECC
T ss_pred EEEEEEeC
Confidence 77777653
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=3.6e-11 Score=70.24 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=49.6
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeE
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~ 77 (212)
+.|.|.+.+. |...+.|+|++. .+.. ......|.|.+++.+|+|.|.|++.+.. ..+.
T Consensus 18 v~L~C~~~~~~~~~~~~w~k~g~--~~~~-----------------~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~ 78 (89)
T d1f2qa2 18 LFLRCHGWRNWDVYKVIYYKDGE--ALKY-----------------WYENHNISITNATVEDSGTYYCTGKVWQLDYESE 78 (89)
T ss_dssp EEEEEEEGGGCCEEEEEEEETTE--ECCS-----------------CCCSSEEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred EEEEEEecCCCCCeEEEEEEeee--cccc-----------------ccccceEEEeeeeeecCcEEEEEEEeCCCCeEee
Confidence 4699999765 567999999873 2211 1122368999999999999999999863 3456
Q ss_pred EEEEEEeccc
Q psy13371 78 FVNLNVVVPT 87 (212)
Q Consensus 78 ~~~l~v~~~~ 87 (212)
.+.|+|.++|
T Consensus 79 ~v~i~V~~~P 88 (89)
T d1f2qa2 79 PLNITVIKAP 88 (89)
T ss_dssp CEEEEEECSC
T ss_pred eEEEEEEeCC
Confidence 6778887765
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=8.3e-12 Score=73.60 Aligned_cols=69 Identities=12% Similarity=0.047 Sum_probs=49.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCE-EEEEEecCC-CceeEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQLSTQ-PVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~-~~~~~~ 78 (212)
+.|.|.+.|.|.|.+.|++++. .+..... .........|.|.+++.+|.| .|+|.+.|. +.....
T Consensus 20 v~l~C~~~g~P~p~v~W~~~~~-~~~~~~~------------~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s 86 (92)
T d2ifga1 20 VLLRCQVEGRGLEQAGWILTEL-EQSATVM------------KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVS 86 (92)
T ss_dssp EEEEEEEECSSCCCCCEEESCC-CSSEEEC------------CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEE
T ss_pred EEEeeeccCCCCcEEEEEECCc-eeeeeee------------eeeeccceeEEEccccccccceEEEEEEEcCCCEEEEE
Confidence 3689999999999999999874 2221110 012345678999999999999 699999996 344444
Q ss_pred EEEE
Q psy13371 79 VNLN 82 (212)
Q Consensus 79 ~~l~ 82 (212)
+.|.
T Consensus 87 ~~l~ 90 (92)
T d2ifga1 87 VQVN 90 (92)
T ss_dssp ECCC
T ss_pred EEEE
Confidence 4443
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=8.4e-11 Score=69.73 Aligned_cols=74 Identities=20% Similarity=0.165 Sum_probs=46.8
Q ss_pred CeeEeeeCCCCCceEEEEe-eCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC-c-eeE
Q psy13371 1 MLHQRKLKGLLPTRVSWIR-HRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP-V-RSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~-~~~ 77 (212)
+.|.|.+.|.|.|.+.|++ .+........ +.... ......++|.|.++..+|+|.|+|.+.|.. . .+.
T Consensus 19 v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~ 89 (96)
T d2c9aa1 19 ATFQCSAIGRTVAGDRLWLQGIDVRDAPLK--------EIKVT-SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 89 (96)
T ss_dssp EEEEEEEESCCCSSCEEEEEETTBCCCCEE--------EEEEE-ETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred EEEEEEEeecCCCcEEEEEeeeeeeeecCC--------ceeEE-EeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEEE
Confidence 3699999999988766544 3322222211 11111 122234579999999999999999999863 3 244
Q ss_pred EEEEEE
Q psy13371 78 FVNLNV 83 (212)
Q Consensus 78 ~~~l~v 83 (212)
.+.|.|
T Consensus 90 ~a~L~V 95 (96)
T d2c9aa1 90 YAELVV 95 (96)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 456665
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=8.2e-12 Score=75.38 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=51.0
Q ss_pred ceeeeCCCcEEEEeEEe-eCCCCCceEEEEEcCeEEEeeCCCCceeEE-eecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 95 DLHVDEGSTINLTCSIK-YSPEPPAYIFWYHHDEVISYDSSRGGVSVI-TEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~-~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+..|+.++|.|.+. +.|.|. +.|++++..+............ ........+.|.|.++..+|.|.|+|.|.|.
T Consensus 11 ~~~v~~G~~v~l~C~~~~g~p~p~--v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~ 88 (104)
T d1nbqa2 11 PSSATIGNRAVLTCSEQDGSPPSE--YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG 88 (104)
T ss_dssp BSEEETTSCEEECCCCCSCBSCCE--EEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECS
T ss_pred CCEEecCCcEEEEEEeecCCCCCE--EEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEEC
Confidence 34678899999999985 565555 9999999876433211100000 0000001134899999999999999999997
Q ss_pred C
Q psy13371 173 D 173 (212)
Q Consensus 173 ~ 173 (212)
.
T Consensus 89 ~ 89 (104)
T d1nbqa2 89 Y 89 (104)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=4e-11 Score=70.70 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=48.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecC----CceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCcee
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSD----QRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRS 76 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 76 (212)
+.|.|.+. .|.+.|.|++++. .+........... .|..+ ...+++|+|.+++.+|+|.|.|++.+.. .+
T Consensus 13 Vtl~c~~~-~p~~~v~W~~~~~-~i~~~~~~~~~~~~~~~~~~~~----~~~~~sL~I~~l~~~DsG~Y~c~~~n~~-~t 85 (93)
T d1ccza1 13 VTFHVPSN-VPLKEVLWKKQKD-KVAELENSEFRAFSSFKNRVYL----DTVSGSLTIYNLTSSDEDEYEMESPNIT-DT 85 (93)
T ss_dssp EEECCCCS-SCCSCEEEEETTE-EEEEEETTEEEECGGGTTSEEE----CTTTCCEEECSCCGGGCEEEEEECTTCC-SC
T ss_pred EEEEecCC-CCCcEEEEEEecc-ccceeeecceeeCCCccceEEE----cCCeeEEEEEecChhhCEEEEEEEECCC-cE
Confidence 36899874 5888999999774 2222211111111 22232 2346789999999999999999998753 34
Q ss_pred EEEEEEE
Q psy13371 77 FFVNLNV 83 (212)
Q Consensus 77 ~~~~l~v 83 (212)
..+.|.|
T Consensus 86 ~~~~l~V 92 (93)
T d1ccza1 86 MKFFLYV 92 (93)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4455554
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=6.4e-11 Score=71.49 Aligned_cols=73 Identities=14% Similarity=0.273 Sum_probs=52.4
Q ss_pred eeeeCCCcEEEEeEEee-CCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+.+|+.++|.|.+.+ .|.|...+.|++++..+....... .........+.|.+.....+|.|.|+|.|.|.
T Consensus 12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~----~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~ 85 (106)
T d1zxqa1 12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGK----AAPAPQEATATFNSTADREDGHRNFSCLAVLD 85 (106)
T ss_dssp SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCS----STTCTTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccce----EeecccceeEEEEEeeehhcCCcEEEEEEEec
Confidence 46788999999999986 444655699999999886443221 11122234456888777788888999999986
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.1e-11 Score=70.95 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=42.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.+ |.|.+.|++++. .+... +.++... .+.+|.|.+++.+|+|.|+|.+.+.
T Consensus 15 ~~l~C~~~g-~~~~v~W~~~g~-~l~~~-------~~~~~~~-----~~~~L~I~~v~~~DsG~Y~C~A~n~ 72 (92)
T d1olza1 15 AELKCSQKS-NLARVFWKFQNG-VLKAE-------SPKYGLM-----GRKNLLIFNLSEGDSGVYQCLSEER 72 (92)
T ss_dssp EEECCCCSC-TTCEEEEEESSS-BCCCC-------SSSBCCT-----TTTCEEECSCCGGGCEEEEEEEEEE
T ss_pred EEEEEEeec-cCCceeeecCcc-cceee-------eeeeecc-----eeeEEEECCCCHHHCcEEEEEEEEc
Confidence 368999998 668999999774 33221 1233322 2336999999999999999999985
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=6.6e-11 Score=68.41 Aligned_cols=63 Identities=8% Similarity=0.101 Sum_probs=42.6
Q ss_pred CeeEeeeCCCCCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC--ceeE
Q psy13371 1 MLHQRKLKGLLPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP--VRSF 77 (212)
Q Consensus 1 ~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~ 77 (212)
+.|.|.+.|.|.| .+.|+|++. .+... ....+.|.....+|+|.|+|.+.|.. ..+.
T Consensus 19 ~~l~C~~~g~P~P~~i~W~k~g~--~i~~~------------------~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~ 78 (85)
T d1rhfa2 19 FQLSCEAVGPPEPVTIVWWRGTT--KIGGP------------------APSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 78 (85)
T ss_dssp EEEEEEEECSSSCCEEEEEETTE--ECSCS------------------EESSEEEEECCCSSCEEEEEEEEETTEEEECC
T ss_pred EEEEEEEecCCcceEEEEEECCE--ECCCC------------------CCcceEEecCCccccEEEEEEEEcCCCcEEEE
Confidence 3689999999998 899999873 22211 01124455666789999999999963 2234
Q ss_pred EEEEEE
Q psy13371 78 FVNLNV 83 (212)
Q Consensus 78 ~~~l~v 83 (212)
.+.|.|
T Consensus 79 ~~~v~V 84 (85)
T d1rhfa2 79 TATVHL 84 (85)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 455554
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.07 E-value=4.5e-11 Score=71.06 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=43.8
Q ss_pred eeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.|.|.+.|.|.|.+.|++++. .+.... +.++... ....|.|..++.+|+|.|.|.+.|.
T Consensus 26 ~l~C~~~g~P~p~v~W~~ng~-~i~~~~------~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~N~ 84 (97)
T d1cs6a1 26 TLTCRARANPPATYRWKMNGT-ELKMGP------DSRYRLV-----AGDLVISNPVKAKDAGSYQCVATNA 84 (97)
T ss_dssp EECCEEEEESCCEEEEEETTE-ECCCST------TSSEEEE-----TTEEEEESCCHHHHCEEEEEEEEET
T ss_pred EEEEEEEEeCCCEEEEEEeee-eccCCC------CceEEee-----eeeEEEEecccccCCEEEEEEEEEC
Confidence 589999999999999999873 222211 2222222 3347888999999999999999986
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.9e-10 Score=68.27 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=49.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceee-----ecCCceEEEeeC-CCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTY-----TSDQRFSAIHRR-EGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-----~~~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|+|..+......+.|++..+........... ...+|+....+. ..++.+|+|.+++.+|+|.|.|.+.+
T Consensus 12 vtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~ 88 (97)
T d2nxyb1 12 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVED 88 (97)
T ss_dssp EEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETT
T ss_pred EEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEEEEec
Confidence 469999998888899999877543333222111 112455554222 34567899999999999999999976
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.05 E-value=6.1e-11 Score=71.53 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=44.2
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+ .+.|.|.+.|+|++....... +.+.... ..+++|.|.+++.+|+|.|+|.+.|.
T Consensus 22 ~~l~C~~~~~~p~~~v~W~k~g~~~~~~~-------~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~ 83 (105)
T d1cs6a2 22 VMFTCSPPPHYPALSYRWLLNEFPNFIPA-------DGRRFVS----QTTGNLYIAKTEASDLGNYSCFATSH 83 (105)
T ss_dssp EEECCCCCSEESCCEEEEEESSTTCBCCC-------CSSEEEC----TTTCCEEESSCCGGGCEEEEEEEEEE
T ss_pred EEEEEEccCCCCCCEEEEEEeeccccccc-------cceeeee----cCCCEEeecccccccCcEEEEEEEEC
Confidence 4689997 678999999999874222211 2233332 23457999999999999999999885
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=8.7e-10 Score=68.57 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=56.4
Q ss_pred CeeEeeeCCC---CCceEEEEeeCcceeee--ecceee------ecCCceEEEeeC-CCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL---LPTRVSWIRHRDIHILT--VGSYTY------TSDQRFSAIHRR-EGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~---p~~~v~W~~~~~~~~~~--~~~~~~------~~~~r~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+... ....|.|++.+...... ...... ....|.....+. ..++++|+|.+++.+|+|.|+|.
T Consensus 20 v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 99 (126)
T d1pkoa_ 20 AELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCF 99 (126)
T ss_dssp EEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEEEEEE
T ss_pred EEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhHCeEEEEE
Confidence 3699998643 34579999876432211 111100 112455555332 45689999999999999999999
Q ss_pred ecCC-CceeEEEEEEEecccce
Q psy13371 69 LSTQ-PVRSFFVNLNVVVPTAE 89 (212)
Q Consensus 69 ~~~~-~~~~~~~~l~v~~~~~~ 89 (212)
+.+. +..+..+.|.|.+|...
T Consensus 100 v~~~~~~~~~~v~L~V~~P~~~ 121 (126)
T d1pkoa_ 100 FRDHSYQEEAAVELKVEDPFYW 121 (126)
T ss_dssp EEETTEEEEEEEEEEEECTTTT
T ss_pred EEECCCEEEEEEEEEEeCCCEE
Confidence 9875 34566677888776533
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.04 E-value=8e-11 Score=69.52 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=43.7
Q ss_pred CeeEeeeCCCCCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGLLPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.|.|.| .+.|++++. .+... +.+.... ..+++|.|.++..+|+|.|+|.+.|..
T Consensus 20 ~~l~C~~~g~p~p~~v~W~~~g~--~l~~~------~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 81 (94)
T d1biha1 20 TVLECIIEGNDQGVKYSWKKDGK--SYNWQ------EHNAALR----KDEGSLVFLRPQASDEGHYQCFAETPA 81 (94)
T ss_dssp EEECCCEESCCSSCEEEEEESSS--BCCTT------TTTEEEC----TTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred EEEEEEecCCCCeeEEEEEeeee--eeeee------cceeeec----ccceEEEEeccChhcCeEEEEEEEeCC
Confidence 3689999999866 799999873 22211 1122221 234579999999999999999999863
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=3.4e-10 Score=66.61 Aligned_cols=80 Identities=11% Similarity=0.181 Sum_probs=53.1
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCC--------ceeEEeecCceEEEEEEEeeeeecCCEEEE
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRG--------GVSVITEKGEVTTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 166 (212)
+.....|++++|.|... .|.+ .+.|.+++..+....... .+...... ..+|.|.+++.+|+|.|+
T Consensus 4 ~v~~~~G~sVtl~c~~~-~p~~--~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~sL~I~~l~~~DsG~Y~ 76 (93)
T d1ccza1 4 QIYGVVYGNVTFHVPSN-VPLK--EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTV----SGSLTIYNLTSSDEDEYE 76 (93)
T ss_dssp EEEEETTCCEEECCCCS-SCCS--CEEEEETTEEEEEEETTEEEECGGGTTSEEECTT----TCCEEECSCCGGGCEEEE
T ss_pred EEEEEECCCEEEEecCC-CCCc--EEEEEEeccccceeeecceeeCCCccceEEEcCC----eeEEEEEecChhhCEEEE
Confidence 35678899999999864 3444 499999887653221111 11111111 124999999999999999
Q ss_pred EEcccC-CeeEEEEEE
Q psy13371 167 CSPSNA-DVASVYVHV 181 (212)
Q Consensus 167 C~~~n~-~~~~~~~~v 181 (212)
|.+.|. ....+.+.|
T Consensus 77 c~~~n~~~t~~~~l~V 92 (93)
T d1ccza1 77 MESPNITDTMKFFLYV 92 (93)
T ss_dssp EECTTCCSCEEEEEEE
T ss_pred EEEECCCcEEEEEEEE
Confidence 999887 555555555
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.6e-11 Score=74.01 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=43.9
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeeccee-eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYT-YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+ .|.|.|.+.|+|++. .+....... ...+.++. .......|.|.+++.+|+|.|+|.+.|.
T Consensus 20 v~l~C~~~~g~p~p~v~W~~~~~-~i~~~~~~~~~~~~~~~~----~~~~~~~l~I~~v~~~D~G~Y~C~a~N~ 88 (104)
T d1nbqa2 20 AVLTCSEQDGSPPSEYTWFKDGI-VMPTNPKSTRAFSNSSYV----LNPTTGELVFDPLSASDTGEYSCEARNG 88 (104)
T ss_dssp EEECCCCCSCBSCCEEEEEETTC-CCCSCSSSSSSCTTCCCC----CCTTTCCEEESSCCGGGCCCEEEEEECS
T ss_pred EEEEEEeecCCCCCEEEEEECCE-EccCCCceeEEeeCCcEE----EeecccceEECCCCcccCcEEEEEEEEC
Confidence 3689998 478999999999874 222211111 11111111 1123357899999999999999999995
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.01 E-value=2.7e-10 Score=65.65 Aligned_cols=62 Identities=21% Similarity=0.130 Sum_probs=42.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFVN 80 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 80 (212)
+.|.|.+.+.|.+.+.|.+.++..... ...+|.|.+++.+|+|.|+|++.+.. .+..+.
T Consensus 23 vtL~C~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~l~i~~~~~~d~G~Y~C~a~~s~-~S~~v~ 81 (84)
T d1fnla1 23 VTLKCQGAYSPEDNSTQWFHNESLISS--------------------QASSYFIDAATVNDSGEYRCQTNLST-LSDPVQ 81 (84)
T ss_dssp EEEEEECCCBTTBCCCEEEETTEEEES--------------------SCSEEEESSCCGGGCEEEEEECSSSC-CCCCEE
T ss_pred EEEEEEeccCCCCeEEEEeeeceeeee--------------------cceeeEecCCcccCCEEEEEEccCCC-ccccEE
Confidence 479999999988865554444322211 22378999999999999999998742 444555
Q ss_pred EEE
Q psy13371 81 LNV 83 (212)
Q Consensus 81 l~v 83 (212)
|.|
T Consensus 82 L~V 84 (84)
T d1fnla1 82 LEV 84 (84)
T ss_dssp EEE
T ss_pred EEC
Confidence 543
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=99.00 E-value=2.4e-09 Score=62.90 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=54.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.....+.|+|..+.. +..........++|+....+...+..+|+|.+++++|+|.|.|.+..
T Consensus 4 vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~ 78 (94)
T d2gj6d1 4 ASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT 78 (94)
T ss_dssp EEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred EEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence 469999988888899999866422 22222223344679998876777789999999999999999998764
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=8.2e-10 Score=65.98 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=41.6
Q ss_pred eeEe------eeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQR------KLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C------~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.|.| .+.+.|.|.|.|+|++. .+... +.++... +..|.|.+++.+|+|.|+|.+.+.
T Consensus 18 ~l~Cp~~~~~~~~~~p~P~i~W~kdg~--~l~~~------~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~ 80 (103)
T d1iray2 18 GLVCPYMEFFKNENNELPKLQWYKDCK--PLLLD------NIHFSGV------KDRLIVMNVAEKHRGNYTCHASYT 80 (103)
T ss_dssp EEECTTGGGGCBTTTBCCCCEEEETTE--ECCCC------SSSEEEE------TTEEEESSCCGGGCEEEEEEEEEE
T ss_pred EEEcCCccccccCCCCCCEEEEEECCc--cccCC------CcEEEec------CCEEEEcccccccCcEEEEEEEEC
Confidence 5788 57788999999999773 33211 1233222 227999999999999999999874
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.99 E-value=7.6e-10 Score=67.17 Aligned_cols=70 Identities=23% Similarity=0.342 Sum_probs=49.2
Q ss_pred eeeeCCCcEEEEeEE-eeCCCCCceEEEEEcCeEEEeeCCCC---ceeEEeecCceEEEEEEEeeeeecCCE---EEEEE
Q psy13371 96 LHVDEGSTINLTCSI-KYSPEPPAYIFWYHHDEVISYDSSRG---GVSVITEKGEVTTSYLLIQQAELKDSG---KYSCS 168 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~-~~~~~p~~~v~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g---~y~C~ 168 (212)
..+.+|+.+.|.|.+ .+.|.|. +.|++++..+....... .......++ +|.|.+++..|+| .|+|.
T Consensus 12 ~t~~EG~~~~L~C~v~~G~P~p~--v~W~k~~~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~v~~~D~gd~g~Y~C~ 84 (111)
T d1biha2 12 KTPIEGRPFQLDCVLPNAYPKPL--ITWKKRLSGADPNADVTDFDRRITAGPDG-----NLYFTIVTKEDVSDIYKYVCT 84 (111)
T ss_dssp ECCBTTEEEEECCCCCEEESCCE--EEEEEEETTSCGGGCCCCCCTTEEECTTS-----CEEEEEECGGGCCSSEEEEEE
T ss_pred ccccCCCeEEEEEEcccCCCCCE--EEEEeCCccccccccceeeeeeecccccc-----ccEEeeeEeeccCCceEEEEE
Confidence 346789999999997 7887777 99999876543221111 112222333 3999999988766 79999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
|.|.
T Consensus 85 A~N~ 88 (111)
T d1biha2 85 AKNA 88 (111)
T ss_dssp EECT
T ss_pred EEeC
Confidence 9998
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.94 E-value=2.5e-10 Score=69.38 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=44.3
Q ss_pred CeeEeee-CCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCE---EEEEEecCC
Q psy13371 1 MLHQRKL-KGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG---VYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~~~~~ 72 (212)
+.|.|.+ .|.|.|.+.|+|++.. +.... .......++... .+++|.|.+++.+|+| .|.|.+.|.
T Consensus 20 ~~L~C~v~~G~P~p~v~W~k~~~~-~~~~~-~~~~~~~~~~~~-----~~~~L~i~~v~~~D~gd~g~Y~C~A~N~ 88 (111)
T d1biha2 20 FQLDCVLPNAYPKPLITWKKRLSG-ADPNA-DVTDFDRRITAG-----PDGNLYFTIVTKEDVSDIYKYVCTAKNA 88 (111)
T ss_dssp EEECCCCCEEESCCEEEEEEEETT-SCGGG-CCCCCCTTEEEC-----TTSCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred EEEEEEcccCCCCCEEEEEeCCcc-ccccc-cceeeeeeeccc-----cccccEEeeeEeeccCCceEEEEEEEeC
Confidence 4699997 8999999999998742 22111 111112233332 3457999999999877 799999996
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=5.9e-10 Score=63.86 Aligned_cols=62 Identities=19% Similarity=0.137 Sum_probs=40.4
Q ss_pred CeeEeeeCCCCCceEEE-EeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEE
Q psy13371 1 MLHQRKLKGLLPTRVSW-IRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 79 (212)
+.|.|.+.+.|.+...| ++++ ..+.. ....|.|.+++.+|+|.|.|.+.+. ..+..+
T Consensus 19 v~L~C~~~~~~~~~~~~~~~~~-~~~~~--------------------~~~~l~i~~v~~~d~G~Y~C~a~~s-~~S~~v 76 (82)
T d1f2qa1 19 VTLTCNGNNFFEVSSTKWFHNG-SLSEE--------------------TNSSLNIVNAKFEDSGEYKCQHQQV-NESEPV 76 (82)
T ss_dssp EEEECCTTCC----CCEEEETT-EECSC--------------------CSSEEEECSCCGGGCEEEEEECTTS-SCCCCE
T ss_pred EEEEEEEeeeeeecceeeeeee-eeeec--------------------ccceeEECCCChhhCCcEEEEecCC-CCcccE
Confidence 47999999998875555 5544 22211 2237899999999999999999874 345556
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 77 ~l~V~ 81 (82)
T d1f2qa1 77 YLEVF 81 (82)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66653
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.7e-09 Score=65.22 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=46.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCC----CCeEEEEEcccCCCCCE-EEEEEecCC-Cc
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRRE----GDEWTLHIKWAQKRDAG-VYECQLSTQ-PV 74 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~L~i~~~~~~d~G-~Y~C~~~~~-~~ 74 (212)
+.|.|.+.+.|.|.|.|++++. .+........ ........... .....|+|.+++.+|.| .|+|.+.|. +.
T Consensus 20 v~l~C~v~g~P~p~i~W~~~g~-~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G~ 96 (107)
T d1iray3 20 IQLICNVTGQLSDIAYWKWNGS-VIDEDDPVLG--EDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI 96 (107)
T ss_dssp EEEEEEEEECTTCEEEEEETTE-ECCTTCSSEE--EEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECSSCE
T ss_pred EEEEEEeccCCCCeEEEEECCc-ccccccceee--eeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeCCCe
Confidence 4699999999999999998763 2211110000 00000000000 01347999999999999 599999996 44
Q ss_pred eeEEEEE
Q psy13371 75 RSFFVNL 81 (212)
Q Consensus 75 ~~~~~~l 81 (212)
.+..+.|
T Consensus 97 ~~~~i~L 103 (107)
T d1iray3 97 DAAYIQL 103 (107)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4444444
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=4.7e-10 Score=68.67 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=52.4
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeeecceeeecCCceEEEeeC--CCCeEEEEEcccCCCC-CEEEEEEecCC-Cce
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRR--EGDEWTLHIKWAQKRD-AGVYECQLSTQ-PVR 75 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~i~~~~~~d-~G~Y~C~~~~~-~~~ 75 (212)
+.|.|.+.+. |.+.+.|++++. .+.... ..++.+.... ......|.|.++..+| +|.|+|.+.|. +..
T Consensus 24 ~~l~C~v~~~~p~~~v~W~~~~~-~i~~~~------~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~ 96 (115)
T d2crya1 24 GQIKCFIRSTPPPDRIAWSWKEN-VLESGT------SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD 96 (115)
T ss_dssp CCCCEEECCSSCCSEEEEESSSC-EECSEE------ETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEE
T ss_pred EEEEEEeecCCCeeEEEEeeeee-eEeeee------eeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeE
Confidence 4689999995 567899999874 222211 2344443222 1223469999999999 79999999996 556
Q ss_pred eEEEEEEEec
Q psy13371 76 SFFVNLNVVV 85 (212)
Q Consensus 76 ~~~~~l~v~~ 85 (212)
+..+.|.|..
T Consensus 97 ~~~~~L~V~~ 106 (115)
T d2crya1 97 TEIIRLKEQG 106 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEEEEEEC
Confidence 6666666643
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=2.6e-09 Score=63.22 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=49.3
Q ss_pred CeeEeeeC-CC-CCceEEEEeeCcceeeee--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Cce
Q psy13371 1 MLHQRKLK-GL-LPTRVSWIRHRDIHILTV--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVR 75 (212)
Q Consensus 1 ~~l~C~~~-~~-p~~~v~W~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 75 (212)
+.|.|... .. +...|.|+|++. .+... +......+.|+.+. .+++|+|.+++.+|+|.|+|.+.+. +..
T Consensus 13 V~L~~~~~~~~~~i~~I~W~~~~~-~i~~~~~~~~~~~~~~~~~~~-----~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~ 86 (98)
T d1hnga1 13 INLNIPNFQMTDDIDEVRWERGST-LVAEFKRKMKPFLKSGAFEIL-----ANGDLKIKNLTRDDSGTYNVTVYSTNGTR 86 (98)
T ss_dssp EEECCTTCCCCTTEEEEEEEETTE-EEEEEETTSCCEESSTTEEEC-----TTSCEEESSCCGGGCEEEEEEEEETTCCE
T ss_pred EEEECCCCCCccchheeeeecccc-ceeEEccCCccccCCCeEEEC-----CCccEEEeCCCHHHCEEEEEEEEeCCCCE
Confidence 35788532 22 346899999763 23221 12222334555543 4568999999999999999999864 322
Q ss_pred --eEEEEEEEe
Q psy13371 76 --SFFVNLNVV 84 (212)
Q Consensus 76 --~~~~~l~v~ 84 (212)
...+.|.|.
T Consensus 87 ~~~~~~~L~V~ 97 (98)
T d1hnga1 87 ILNKALDLRIL 97 (98)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEEE
Confidence 456667664
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.84 E-value=1e-08 Score=62.06 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=52.3
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.+.|..+.+..|+.++|.|...+.......+.|+++. +.........++.....+....+..|.|++++.+|+|.|.|
T Consensus 3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC 82 (112)
T d1sq2n_ 3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC 82 (112)
T ss_dssp EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeE
Confidence 4556777889999999999885433233358999842 21111111222333333333334679999999999999999
Q ss_pred Eccc
Q psy13371 168 SPSN 171 (212)
Q Consensus 168 ~~~n 171 (212)
.+..
T Consensus 83 A~~~ 86 (112)
T d1sq2n_ 83 GLGV 86 (112)
T ss_dssp EECB
T ss_pred EEec
Confidence 8654
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=9.6e-09 Score=60.71 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=48.0
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEee-CCC-----CceeEEeecCceEEEEEEEeeeeecCCEEEEEEc
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYD-SSR-----GGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSP 169 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 169 (212)
+....|+.++|.|...........+.|++++..+..- ... ..+.....++ +|.|++++.+|+|.|+|.+
T Consensus 5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ng-----SL~I~nl~~~DsG~Y~c~v 79 (98)
T d1hnga1 5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG-----DLKIKNLTRDDSGTYNVTV 79 (98)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS-----CEEESSCCGGGCEEEEEEE
T ss_pred EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCc-----cEEEeCCCHHHCEEEEEEE
Confidence 4567799999999643222333469999988766322 111 1122222333 3999999999999999999
Q ss_pred ccC
Q psy13371 170 SNA 172 (212)
Q Consensus 170 ~n~ 172 (212)
.+.
T Consensus 80 ~~~ 82 (98)
T d1hnga1 80 YST 82 (98)
T ss_dssp EET
T ss_pred EeC
Confidence 876
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=5e-09 Score=62.58 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=46.8
Q ss_pred CeeEeeeCC-CCCc--eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-Ccee
Q psy13371 1 MLHQRKLKG-LLPT--RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-PVRS 76 (212)
Q Consensus 1 ~~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~ 76 (212)
+.|.|.+.| .|.+ .+.|+|++. .+..... ........|.|..++.+|.|.|+|++.|. +...
T Consensus 22 ~~L~C~v~g~~P~p~~~v~W~~~~~--~l~~~~~------------~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~ 87 (103)
T d1iama1 22 LTLRCQVEGGAPRAQLTVVLLRGEK--ELKREPA------------VGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQG 87 (103)
T ss_dssp EEEEEEEECCBCGGGEEEEEEETTE--EEEEEEC------------CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGT
T ss_pred EEEEEEecCCCCCCceEEEEccccc--ccccccc------------ccccceEEEEEeeehhHCCCEEEEEEEeCCCCcc
Confidence 469999997 4554 678998873 3321110 01223457899999999999999999985 3344
Q ss_pred EEEEEEEecc
Q psy13371 77 FFVNLNVVVP 86 (212)
Q Consensus 77 ~~~~l~v~~~ 86 (212)
....+++..+
T Consensus 88 ~~~~~~~s~p 97 (103)
T d1iama1 88 LELFENTSAP 97 (103)
T ss_dssp SCEEEEECCC
T ss_pred CeEeeeEcCC
Confidence 4445555443
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.81 E-value=2e-08 Score=60.85 Aligned_cols=82 Identities=20% Similarity=0.275 Sum_probs=52.9
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 167 (212)
.+.|..+.+.+|+.++|.|...+.......+.|++.. .....-.....+.....+.......|.|++++.+|+|.|.|
T Consensus 4 ~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC 83 (113)
T d1vesa_ 4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKC 83 (113)
T ss_dssp EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred EeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEee
Confidence 4557778899999999999987543344458999752 21111111122233333222234579999999999999999
Q ss_pred Eccc
Q psy13371 168 SPSN 171 (212)
Q Consensus 168 ~~~n 171 (212)
.+..
T Consensus 84 a~~~ 87 (113)
T d1vesa_ 84 QAFY 87 (113)
T ss_dssp EEEE
T ss_pred eeec
Confidence 8854
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=98.80 E-value=1.9e-08 Score=60.65 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=51.5
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcceeeee------cceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEE
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIHILTV------GSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~~~~~------~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 67 (212)
+.|.|.++|.. ...+.|+|..+.+-++. ++..... .+|+++++|...+...|+|.+++.+|++.|.|
T Consensus 18 l~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~eDtAvYYC 97 (120)
T d1ai1h1 18 LSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYC 97 (120)
T ss_dssp EEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGGGCEEEEE
T ss_pred EEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeeccceeEEEE
Confidence 47999999864 34789999765322221 1112211 27999999888889999999999999999999
Q ss_pred Eec
Q psy13371 68 QLS 70 (212)
Q Consensus 68 ~~~ 70 (212)
...
T Consensus 98 Ar~ 100 (120)
T d1ai1h1 98 SRE 100 (120)
T ss_dssp EEE
T ss_pred Eec
Confidence 743
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.80 E-value=1.1e-08 Score=62.71 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=51.8
Q ss_pred CeeEeeeCCC----CCceEEEEeeCcce-----eeee-cceee-----ecCCceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGL----LPTRVSWIRHRDIH-----ILTV-GSYTY-----TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~----p~~~v~W~~~~~~~-----~~~~-~~~~~-----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.+... ....+.|+|..... +... ..... ...+|+.+..+...++.+|+|.+++.+|+|.|
T Consensus 17 v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y 96 (119)
T d1neua_ 17 VTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTF 96 (119)
T ss_dssp EEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCCChHHCEEE
Confidence 3689987532 24589998754211 1111 11111 11257777655666788999999999999999
Q ss_pred EEEecCCC---ceeEEEEEEEe
Q psy13371 66 ECQLSTQP---VRSFFVNLNVV 84 (212)
Q Consensus 66 ~C~~~~~~---~~~~~~~l~v~ 84 (212)
.|.+.+.+ .....+.|.|.
T Consensus 97 ~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 97 TCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp EEEEEC----CCEEEEEEEEEE
T ss_pred EEEEEECCCcCceEEEEEEEEE
Confidence 99998742 23344555553
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=98.79 E-value=2.7e-09 Score=61.46 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=43.8
Q ss_pred CeeEeeeCCCCCc-eEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEEE
Q psy13371 1 MLHQRKLKGLLPT-RVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFFV 79 (212)
Q Consensus 1 ~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 79 (212)
+.|.|.+.+.|.+ .+.|++++ ..+.. ....|.|.+++.+|+|.|.|++.+. ..+..+
T Consensus 22 v~L~C~~~~~~~~~~~~w~~~g--~~~~~-------------------~~~~l~i~~v~~~dsG~Y~C~a~ns-~~S~~v 79 (85)
T d2fcba1 22 VTLTCRGTHSPESDSIQWFHNG--NLIPT-------------------HTQPSYRFKANNNDSGEYTCQTGQT-SLSDPV 79 (85)
T ss_dssp EEEEEECSSCCCTTCCEEEETT--EECTT-------------------CCSSEEEEECCGGGCEEEEEECTTS-BCCCCE
T ss_pred EEEEEEEeeccceeEEEeeccc--ccccc-------------------cccceEEeeccccCCcEEEEECCCC-cccccE
Confidence 4699999998765 57777766 22211 1225888999999999999999875 345556
Q ss_pred EEEEe
Q psy13371 80 NLNVV 84 (212)
Q Consensus 80 ~l~v~ 84 (212)
.|.|.
T Consensus 80 ~l~V~ 84 (85)
T d2fcba1 80 HLTVL 84 (85)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66653
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=6.4e-08 Score=58.18 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=50.1
Q ss_pred CeeEeeeCCCC--CceEEEEeeCccee----eee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHI----LTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~----~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|...... ...+.|+|...... ... ........+|+.+..+...+..+|+|.+++.+|+|.|.|.+...
T Consensus 14 vtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C~v~~~ 92 (108)
T d1hkfa_ 14 LTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRP 92 (108)
T ss_dssp EEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred EEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEEEEEEecC
Confidence 46999876542 45678998543221 111 11122234788887777888999999999999999999998764
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.79 E-value=1.7e-08 Score=61.38 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=53.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.....+...+.|+|..... +... ........+|+....+......+|+|.+++.+|+|.|.|.+...
T Consensus 18 vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~~ 94 (114)
T d2cdea1 18 CTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDR 94 (114)
T ss_dssp CEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEEEEEECS
T ss_pred EEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccceeeecC
Confidence 579999988887899999876421 1111 11112234788887666778899999999999999999988763
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=2.3e-08 Score=61.01 Aligned_cols=86 Identities=21% Similarity=0.211 Sum_probs=56.2
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcceee----ee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIHIL----TV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~~~----~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|...... ...+.|+|....... .. ........+|+.+..+...+..+|+|.+++.+|+|.|.|.+...
T Consensus 17 vtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~ 96 (116)
T d1xeda_ 17 VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGIN 96 (116)
T ss_dssp EEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCG
T ss_pred EEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCEEEEEEEEcC
Confidence 46899986442 356789986532211 11 11111224778887777888999999999999999999998764
Q ss_pred C-ceeEEEEEEEecc
Q psy13371 73 P-VRSFFVNLNVVVP 86 (212)
Q Consensus 73 ~-~~~~~~~l~v~~~ 86 (212)
+ .....+.|+|.+.
T Consensus 97 ~~~~~~~v~L~V~~~ 111 (116)
T d1xeda_ 97 SRGLSFDVSLEVLEH 111 (116)
T ss_dssp GGCCEEEEEEEEECC
T ss_pred CCCceEeEEEEEECC
Confidence 3 3445667777654
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.78 E-value=2.9e-08 Score=60.27 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=51.9
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcce----eeee--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIH----ILTV--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~----~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+++. ....+.|+|..+.. ++.. +......++||.+..+.......|.|.+++++|+|.|.|.+...
T Consensus 17 vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~ 95 (114)
T d3bp5a1 17 ATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISL 95 (114)
T ss_dssp EEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECS
T ss_pred EEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEEEEEEEeC
Confidence 3689998765 45679999965422 1111 22233456899988766667889999999999999999987653
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.77 E-value=3.5e-08 Score=58.93 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=52.8
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceee-------eecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHIL-------TVGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~-------~~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|. ....+.|+|..+.+-+ ......... .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eDTAvYYCA 97 (117)
T d1jnhb1 18 VKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDSAVYSCS 97 (117)
T ss_dssp EEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCcceEEEEe
Confidence 4799999997 4678999997653221 122223222 279999998888999999999999999999996
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 r~ 99 (117)
T d1jnhb1 98 RG 99 (117)
T ss_dssp EE
T ss_pred ec
Confidence 53
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.76 E-value=2.8e-08 Score=59.31 Aligned_cols=71 Identities=21% Similarity=0.329 Sum_probs=53.0
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.++|.. .-.+.|+|+.+.+-++ .+...... .+|+++++|...+...|+|++++.+|++.|.|..
T Consensus 18 l~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr 97 (117)
T d1c5db1 18 LSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTR 97 (117)
T ss_dssp EEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcceEEEEec
Confidence 47999999874 5689999976532221 12222222 3799999988889999999999999999999965
Q ss_pred cC
Q psy13371 70 ST 71 (212)
Q Consensus 70 ~~ 71 (212)
..
T Consensus 98 ~~ 99 (117)
T d1c5db1 98 ED 99 (117)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.75 E-value=3.7e-08 Score=59.75 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=51.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee-----ecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT-----VGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+++.....+.|+|........ .........+|+............|+|.+++.+|+|.|.|....
T Consensus 18 v~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~YyCa~~~ 93 (113)
T d2bnqd1 18 LVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRP 93 (113)
T ss_dssp EEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEeEeEec
Confidence 469999998888889999966422211 11112223467777766677889999999999999999998764
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=7.9e-09 Score=62.04 Aligned_cols=63 Identities=5% Similarity=-0.018 Sum_probs=39.2
Q ss_pred CeeEeeeCCC---CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL---LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~---p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|+|.+.|. |.+.+.|+|++. .+......... . ........|+|.....+|.|.|+|++.+.
T Consensus 20 v~l~C~v~g~~p~p~~~i~W~~~~~-~i~~~~~~~~~-~-------~~~~~~s~l~~~~~~~d~g~~ytC~A~n~ 85 (106)
T d1zxqa1 20 FTIECRVPTVEPLDSLTLFLFRGNE-TLHYETFGKAA-P-------APQEATATFNSTADREDGHRNFSCLAVLD 85 (106)
T ss_dssp EEEEEEECSCBCGGGEEEEEEETTE-EEEEEECCSST-T-------CTTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred EEEEEEEeCcccCCCceEEEEcCCE-EeeecccceEe-e-------cccceeEEEEEeeehhcCCcEEEEEEEec
Confidence 3699999983 456899999873 22221111100 0 01112335777777888888999999984
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.74 E-value=2.1e-08 Score=59.85 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=53.5
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee-------eecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL-------TVGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~-------~~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-+ ..+...... .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eDTAvYYCA 97 (117)
T d1jpth1 18 LRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVYYCA 97 (117)
T ss_dssp EEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCCceEEEEe
Confidence 46999999975 678999997753211 112222222 389999998888999999999999999999996
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 r~~ 100 (117)
T d1jpth1 98 RDT 100 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 543
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=7.8e-08 Score=59.42 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=47.2
Q ss_pred eeeeCCCcEEEEeEEeeCC-CCCceEEEEEcCeE--E-EeeC----------CCCceeE-EeecCceEEEEEEEeeeeec
Q psy13371 96 LHVDEGSTINLTCSIKYSP-EPPAYIFWYHHDEV--I-SYDS----------SRGGVSV-ITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~-~p~~~v~W~~~~~~--~-~~~~----------~~~~~~~-~~~~~~~~~~~l~i~~~~~~ 160 (212)
+.+..|++++|.|...... .....+.|++.+.. . .... ....+.. ...........|.|++++.+
T Consensus 12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 91 (126)
T d1pkoa_ 12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS 91 (126)
T ss_dssp EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG
T ss_pred EEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchh
Confidence 6788999999999986332 23345899986431 1 1100 0111111 11111112356999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+.+.
T Consensus 92 D~G~Y~C~v~~~ 103 (126)
T d1pkoa_ 92 DEGGYTCFFRDH 103 (126)
T ss_dssp GCEEEEEEEEET
T ss_pred HCeEEEEEEEEC
Confidence 999999999886
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.73 E-value=3.3e-08 Score=59.81 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=50.1
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcceeeee------cceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEE
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIHILTV------GSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~~~~~------~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 67 (212)
+.|.|.++|.. ...+.|+|..+..-+.. ....... .+||++..+...+...|+|.+++.+|++.|.|
T Consensus 18 v~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eDsAvYyC 97 (120)
T d2agjh1 18 LTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYC 97 (120)
T ss_dssp EEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGGCEEEEE
T ss_pred EEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeeccceEEee
Confidence 47999998753 35789999765322111 1111111 37999998777888999999999999999999
Q ss_pred Eec
Q psy13371 68 QLS 70 (212)
Q Consensus 68 ~~~ 70 (212)
...
T Consensus 98 Ar~ 100 (120)
T d2agjh1 98 ART 100 (120)
T ss_dssp EEE
T ss_pred Eec
Confidence 744
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=98.73 E-value=4.1e-08 Score=58.67 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=52.9
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.++|.. ...+.|+|..+..-++ ........ .+|+++.+|...+...|+|++++.+|++.|.|..
T Consensus 18 l~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr 97 (116)
T d7fabh1 18 LSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADTAVYYCAR 97 (116)
T ss_dssp EEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccceEEEeee
Confidence 46999999874 5689999976532211 11122222 3799999988888999999999999999999975
Q ss_pred cC
Q psy13371 70 ST 71 (212)
Q Consensus 70 ~~ 71 (212)
..
T Consensus 98 ~~ 99 (116)
T d7fabh1 98 NL 99 (116)
T ss_dssp EC
T ss_pred ec
Confidence 43
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=98.73 E-value=3.6e-08 Score=59.29 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=52.2
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........ .+||++++|...+...|+|++++.+|++.|.|..
T Consensus 18 l~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDtA~YYCAr 97 (120)
T d1dn0b1 18 LSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR 97 (120)
T ss_dssp EEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccccEEEEEe
Confidence 47999999974 5689999976532221 11122222 3799999988888999999999999999999964
Q ss_pred c
Q psy13371 70 S 70 (212)
Q Consensus 70 ~ 70 (212)
.
T Consensus 98 ~ 98 (120)
T d1dn0b1 98 P 98 (120)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=2.6e-08 Score=58.52 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=43.7
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. .-.+.|+|+.+.+-++ ........ .+|++++++...+...|+|++++.+|++.|.|.
T Consensus 5 l~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAvYYCA 84 (103)
T d1oari_ 5 VKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCA 84 (103)
T ss_dssp EEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSEEEEE
T ss_pred eEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEEEEeE
Confidence 47999999874 5689999977532221 11112211 389999988788888999999999999999997
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 85 r~ 86 (103)
T d1oari_ 85 RM 86 (103)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.72 E-value=5.7e-08 Score=58.45 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=52.5
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeee-------cceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTV-------GSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~-------~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++. ....... .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 19 l~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eDtA~YYCA 98 (122)
T d1vgeh1 19 VKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCA 98 (122)
T ss_dssp EEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCcceEEEEe
Confidence 47999999975 56899999775322211 1112211 389999998888999999999999999999997
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 99 r~ 100 (122)
T d1vgeh1 99 RD 100 (122)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.72 E-value=6.4e-08 Score=57.91 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=52.7
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........ .+|++++.|...+...|+|.+++.+|++.|.|.
T Consensus 17 l~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eDtAvYYCA 96 (117)
T d1um5h1 17 VKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSEDSAVYYCA 96 (117)
T ss_dssp EEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCcceEEEEe
Confidence 47999999864 5689999977533221 12222222 389999998888899999999999999999996
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 97 r~ 98 (117)
T d1um5h1 97 RS 98 (117)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.72 E-value=2.3e-08 Score=59.75 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=52.3
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eDtAvYYCA 97 (118)
T d1nlbh1 18 VKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNEDTATYFCA 97 (118)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCcceEEEEe
Confidence 47999999874 5689999976532211 12222211 379999998888899999999999999999996
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 r~ 99 (118)
T d1nlbh1 98 RF 99 (118)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.71 E-value=1.3e-07 Score=57.24 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=52.3
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e-E--E-Eee-----CCCCceeEEeecCceEEEEEEEeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E-V--I-SYD-----SSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~-~--~-~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
.+.|..+.+.+|+.++|.|...... ....+.|++.. . + + ... .....++............|.|.+++
T Consensus 3 tqsP~~l~v~~G~~vtl~C~~~~~~-~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 81 (114)
T d3bp5a1 3 TFYPAWLTVSEGANATFTCSLSNWS-EDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR 81 (114)
T ss_dssp EEESSEEEEETTCCEEEEEEESCCC-TTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred eECCCeEEECCCCCEEEEEEECCCC-CcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence 4567778899999999999985432 23348999852 2 1 1 111 11122333333333344669999999
Q ss_pred ecCCEEEEEEccc
Q psy13371 159 LKDSGKYSCSPSN 171 (212)
Q Consensus 159 ~~d~g~y~C~~~n 171 (212)
.+|+|.|.|.+..
T Consensus 82 ~~Dsg~YyCa~~~ 94 (114)
T d3bp5a1 82 RNDSGIYLCGAIS 94 (114)
T ss_dssp GGGCEEEEEEEEC
T ss_pred cCCCeEEEEEEEe
Confidence 9999999998764
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.71 E-value=4.1e-08 Score=58.96 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=53.5
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ .+...... .+|+.+++|...+...|+|.+++.+|++.|.|.
T Consensus 18 l~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eDTAvYYCA 97 (119)
T d1rz7h1 18 VKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSEDTAVYYCA 97 (119)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcccceEEEEe
Confidence 47999999975 5689999976532211 12223322 269999998899999999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 r~~ 100 (119)
T d1rz7h1 98 ADP 100 (119)
T ss_dssp ECT
T ss_pred ecC
Confidence 654
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=2.9e-08 Score=60.53 Aligned_cols=95 Identities=22% Similarity=0.352 Sum_probs=57.3
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCC-CCCceEEEEEcCe-----EEEeeC-----CCCceeEEeecCceEEEEEEEeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSP-EPPAYIFWYHHDE-----VISYDS-----SRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~-~p~~~v~W~~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
+.+|..+.+.+|+.++|.|...... .....+.|++... .+.... ....+.............|.|+++.
T Consensus 3 it~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~ 82 (116)
T d1xeda_ 3 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS 82 (116)
T ss_dssp SBCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred ccCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhC
Confidence 4567788899999999999864221 1122378987532 111111 1112222333333334569999999
Q ss_pred ecCCEEEEEEcccC---CeeEEEEEEeec
Q psy13371 159 LKDSGKYSCSPSNA---DVASVYVHVLNG 184 (212)
Q Consensus 159 ~~d~g~y~C~~~n~---~~~~~~~~v~~~ 184 (212)
.+|+|.|.|.+... ....+.+.|+..
T Consensus 83 ~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~ 111 (116)
T d1xeda_ 83 QDDSGRYKCGLGINSRGLSFDVSLEVLEH 111 (116)
T ss_dssp GGGCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred cCCCEEEEEEEEcCCCCceEeEEEEEECC
Confidence 99999999988754 344556666554
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.71 E-value=4.7e-08 Score=58.07 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=52.8
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee-------eecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL-------TVGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~-------~~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-+ .......+. .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eDtAvYYCA 97 (114)
T d1indh1 18 LKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSEDTALYFCA 97 (114)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCcccEEEEC
Confidence 46999999874 578999997753221 112222222 379999998888999999999999999999997
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 ~~ 99 (114)
T d1indh1 98 SH 99 (114)
T ss_dssp CG
T ss_pred CC
Confidence 54
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=1.5e-08 Score=62.52 Aligned_cols=84 Identities=19% Similarity=0.302 Sum_probs=52.3
Q ss_pred CeeEeeeCCCC----CceEEEEeeCccee-------eeecceee-----ecCCceEEEee-CCCCeEEEEEcccCCCCCE
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIHI-------LTVGSYTY-----TSDQRFSAIHR-REGDEWTLHIKWAQKRDAG 63 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~~-------~~~~~~~~-----~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G 63 (212)
+.|.|.++..+ ...+.|++...... ........ ...+|..+..+ ...++.+|+|.+++.+|+|
T Consensus 22 v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G 101 (124)
T d1eaja_ 22 AYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIG 101 (124)
T ss_dssp EEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSCCGGGCE
T ss_pred EEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEcccEEccCE
Confidence 46899987543 34689997542111 11111111 11256666532 2446788999999999999
Q ss_pred EEEEEecCCC-ceeEEEEEEEe
Q psy13371 64 VYECQLSTQP-VRSFFVNLNVV 84 (212)
Q Consensus 64 ~Y~C~~~~~~-~~~~~~~l~v~ 84 (212)
.|.|.+.+.. .....+.|+|.
T Consensus 102 ~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 102 TYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp EEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEECCCeEEeEEEEEEE
Confidence 9999998753 44555666664
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.71 E-value=4.8e-08 Score=58.71 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=52.2
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........ .+|+++++|...+...|+|.+++.+|++.|.|..
T Consensus 17 l~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr 96 (119)
T d1kxvc_ 17 LRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKP 96 (119)
T ss_dssp EEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCcceEeeee
Confidence 47999999864 5689999976532211 11122222 2799999988889999999999999999999975
Q ss_pred c
Q psy13371 70 S 70 (212)
Q Consensus 70 ~ 70 (212)
.
T Consensus 97 ~ 97 (119)
T d1kxvc_ 97 S 97 (119)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=98.70 E-value=5.2e-08 Score=57.43 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=53.0
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeee------c---ceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTV------G---SYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~------~---~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.++|.. .-.+.|+|..+.+-++. . ...... .+|+++++|...+...|+|++++.+|++.|.
T Consensus 18 l~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~eDTAvYY 97 (109)
T d2ck0h1 18 LKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKTEDTGIYY 97 (109)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred eEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCHhHCEEEE
Confidence 47999999874 56899999775432221 1 111222 2699999988899999999999999999999
Q ss_pred EEecC
Q psy13371 67 CQLST 71 (212)
Q Consensus 67 C~~~~ 71 (212)
|....
T Consensus 98 CAr~~ 102 (109)
T d2ck0h1 98 CVRGR 102 (109)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 97543
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.70 E-value=8.1e-08 Score=57.38 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=53.9
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ...... .-.+|++++.|...+...|+|++++.+|++.|.|.
T Consensus 18 v~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA 97 (117)
T d1iqdb1 18 VKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDDTAVYYCA 97 (117)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCcceEEEEe
Confidence 46999999874 5688999976532221 112222 12489999998888999999999999999999998
Q ss_pred ecCC
Q psy13371 69 LSTQ 72 (212)
Q Consensus 69 ~~~~ 72 (212)
....
T Consensus 98 ~~~~ 101 (117)
T d1iqdb1 98 VPDP 101 (117)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 6653
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.70 E-value=4.7e-08 Score=58.52 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=53.0
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|+.+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDtAvYYCA 97 (118)
T d2fbjh1 18 LKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCA 97 (118)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCcceEEEee
Confidence 47999999975 5689999976532211 12222222 379999998888899999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 r~~ 100 (118)
T d2fbjh1 98 RLH 100 (118)
T ss_dssp EEE
T ss_pred Eec
Confidence 544
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=98.70 E-value=3.5e-08 Score=58.92 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=52.8
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|..
T Consensus 18 l~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDTAvYYCAr 97 (116)
T d1a2yb_ 18 LSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCAR 97 (116)
T ss_dssp EEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred eEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccceEEEEEE
Confidence 47999999874 5789999976532211 11222222 3699999988889999999999999999999975
Q ss_pred cC
Q psy13371 70 ST 71 (212)
Q Consensus 70 ~~ 71 (212)
..
T Consensus 98 ~~ 99 (116)
T d1a2yb_ 98 ER 99 (116)
T ss_dssp ES
T ss_pred eC
Confidence 54
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.70 E-value=3.6e-08 Score=59.02 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=51.7
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|. ....+.|+|..+.+-+. .+...... .+||++.+|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eDtAvYYCA 97 (115)
T d1f3dh1 18 VKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFEDSAVYYCA 97 (115)
T ss_dssp EEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCCcEEEEEe
Confidence 4799999987 45689999976532222 11112211 379999988888888999999999999999996
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 r~ 99 (115)
T d1f3dh1 98 ND 99 (115)
T ss_dssp EC
T ss_pred cc
Confidence 54
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.68 E-value=7.7e-08 Score=57.63 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=53.0
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|.+.|.|.
T Consensus 18 l~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eDTAvYYCA 97 (120)
T d1ad9b1 18 VKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSEDTAFYFCA 97 (120)
T ss_dssp EEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCcceEEEEE
Confidence 46999999875 5689999976532221 11222222 389999999899999999999999999999997
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 r~ 99 (120)
T d1ad9b1 98 RE 99 (120)
T ss_dssp EE
T ss_pred Ec
Confidence 54
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.68 E-value=5.3e-08 Score=58.97 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=53.7
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee-------eecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL-------TVGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~-------~~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-+ ..+...... .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 17 l~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eDtAvYYCA 96 (124)
T d1zvya1 17 LRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCG 96 (124)
T ss_dssp EEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCcceEEEEe
Confidence 47999999864 668999997753221 112223322 379999998888999999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 97 r~~ 99 (124)
T d1zvya1 97 ATR 99 (124)
T ss_dssp ECS
T ss_pred ecc
Confidence 653
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.68 E-value=6.1e-08 Score=58.82 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=53.4
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee-------eecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL-------TVGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~-------~~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-+ ..+...... .+|+++++|...+...|+|.+++.+|.+.|.|.
T Consensus 18 l~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCA 97 (128)
T d2nxyd1 18 VKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFCA 97 (128)
T ss_dssp EEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccCceEEEEe
Confidence 47999999975 567899997653221 112222222 389999998888999999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 r~~ 100 (128)
T d2nxyd1 98 GVY 100 (128)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=98.68 E-value=3e-08 Score=58.38 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=50.7
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeee------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILT------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.++|. ....+.|+|+.+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|..
T Consensus 11 l~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~ 90 (107)
T d1sjva_ 11 LKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYT 90 (107)
T ss_dssp EEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCSEEEEEE
T ss_pred cEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccceeeeEec
Confidence 4699999986 46788999976522211 11222222 2799999988888899999999999999999975
Q ss_pred cC
Q psy13371 70 ST 71 (212)
Q Consensus 70 ~~ 71 (212)
..
T Consensus 91 ~~ 92 (107)
T d1sjva_ 91 HY 92 (107)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.68 E-value=7.4e-08 Score=57.27 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=52.7
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeecC---CceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTSD---QRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~~---~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........+ +|+++++|...+...|+|++++.+|.+.|.|.
T Consensus 18 l~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~eDtAvYYCA 97 (116)
T d1mjuh1 18 VKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCA 97 (116)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCCCceEEEEc
Confidence 47999999874 5788999976532221 122233222 69999998888999999999999999999996
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 r~ 99 (116)
T d1mjuh1 98 NK 99 (116)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.68 E-value=6e-08 Score=58.25 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=52.6
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|. ....+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eDtAvYYCA 97 (121)
T d2p49b1 18 LRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPEDTATYYCA 97 (121)
T ss_dssp EEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccceeEEeee
Confidence 4799999986 46789999977532211 11111211 369999988888899999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 r~~ 100 (121)
T d2p49b1 98 AGG 100 (121)
T ss_dssp ESS
T ss_pred ccC
Confidence 653
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.67 E-value=8.2e-08 Score=57.87 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=52.7
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeee-------cceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTV-------GSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~-------~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+..-+.. ....... .+|+++.++...+...|+|.+++.+|++.|.|.
T Consensus 18 l~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eDtA~YYCA 97 (120)
T d1pg7x1 18 VKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSAVYYCA 97 (120)
T ss_dssp EEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCcceEEEee
Confidence 46999999874 56899999775332221 1112211 379999988888889999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 r~~ 100 (120)
T d1pg7x1 98 RED 100 (120)
T ss_dssp EEC
T ss_pred ecC
Confidence 543
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=98.67 E-value=7.7e-08 Score=57.52 Aligned_cols=71 Identities=23% Similarity=0.369 Sum_probs=53.2
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.++|.. ...+.|+|..+.+-++ .+...... .+|+++++|...+...|+|++++.+|++.|.|..
T Consensus 18 l~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDtA~YyCAr 97 (118)
T d1lo4h1 18 LTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDTAIYYCAR 97 (118)
T ss_dssp EEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcceEEEecc
Confidence 47999999974 6799999976532221 11122222 2799999988889999999999999999999975
Q ss_pred cC
Q psy13371 70 ST 71 (212)
Q Consensus 70 ~~ 71 (212)
..
T Consensus 98 ~~ 99 (118)
T d1lo4h1 98 GT 99 (118)
T ss_dssp EE
T ss_pred cC
Confidence 43
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.67 E-value=5.5e-08 Score=58.15 Aligned_cols=69 Identities=13% Similarity=0.254 Sum_probs=51.9
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+..-++ ........ .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCA 97 (118)
T d2jelh1 18 VKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYCA 97 (118)
T ss_dssp EEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCcceeeeEE
Confidence 46999999975 5689999977533221 11122222 279999998888999999999999999999995
Q ss_pred e
Q psy13371 69 L 69 (212)
Q Consensus 69 ~ 69 (212)
.
T Consensus 98 r 98 (118)
T d2jelh1 98 R 98 (118)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.67 E-value=5.4e-08 Score=58.93 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=50.7
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+++. +...+.|+|....... ......++|+....+...+..+|+|.+++.+|+|.|.|.+..
T Consensus 18 vtL~C~~s~~~~~~~~~~Wyrq~~g~~~---~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~ 87 (113)
T d1vesa_ 18 LTINCVLRDASFELKDTGWYRTKLGSTN---EQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY 87 (113)
T ss_dssp EEEEEEEESCSSCCCEEEEEEEETTCCC---CEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEEECCCcccCCccceeeeeccccc---eeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence 4699998754 4567999986542211 122334678888877777888999999999999999998754
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.66 E-value=7.5e-08 Score=58.17 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=53.2
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ .+...... .+||++++|...+...|+|++++.+|.+.|.|.
T Consensus 18 l~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eDTAvYYCA 97 (125)
T d1op3h1 18 LILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCA 97 (125)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCccceeEeEe
Confidence 47999999864 5689999977532221 12222222 379999999899999999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 r~~ 100 (125)
T d1op3h1 98 RKG 100 (125)
T ss_dssp EEC
T ss_pred ecc
Confidence 543
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.66 E-value=9.1e-08 Score=57.88 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=52.7
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee-------eecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL-------TVGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~-------~~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-+ ..+...... .+||++++|...+...|+|++++.+|.+.|.|.
T Consensus 17 l~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eDTAvYYCA 96 (126)
T d1lmka1 17 LKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSEDSAVYYCA 96 (126)
T ss_dssp EEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCcceEEEEe
Confidence 47999999974 678999997653222 122233222 389999998899999999999999999999996
Q ss_pred e
Q psy13371 69 L 69 (212)
Q Consensus 69 ~ 69 (212)
.
T Consensus 97 r 97 (126)
T d1lmka1 97 R 97 (126)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.66 E-value=7e-08 Score=58.21 Aligned_cols=68 Identities=16% Similarity=0.270 Sum_probs=50.6
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+++. ....+.|+|..+..-. ......++|+....+...+..+|+|.+++.+|+|.|.|.+..
T Consensus 17 vtl~C~~s~~s~~~~~i~WYrq~~g~~~---~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~ 86 (112)
T d1sq2n_ 17 LTINCVLRDASYALGSTCWYRKKSGEGN---EESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV 86 (112)
T ss_dssp EEEEEEECSCSSCCCCEEEEEEETTSCC---CEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred EEEEEEECCCcccCCceEEEEeecccee---eeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEec
Confidence 4699998764 4578999986642211 122334678888876677788999999999999999998764
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=98.66 E-value=8.4e-08 Score=57.51 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=51.9
Q ss_pred CeeEeeeCCCCC---ceEEEEeeCcceeee------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLLP---TRVSWIRHRDIHILT------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p~---~~v~W~~~~~~~~~~------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|... ..+.|+|..+.+-++ ........ .+|+++++|...+...|+|.+++.+|.+.|.|.
T Consensus 18 l~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eDTAvYYCA 97 (119)
T d1ncwh1 18 LSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTEDTATYYCA 97 (119)
T ss_dssp EEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCCceEEEEe
Confidence 479999999753 468999876532221 11222222 279999998899999999999999999999996
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 r~ 99 (119)
T d1ncwh1 98 GL 99 (119)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.66 E-value=5.7e-08 Score=58.52 Aligned_cols=71 Identities=20% Similarity=0.337 Sum_probs=52.8
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|+.+.+-++ .+...... .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eDtAvYYCA 97 (123)
T d1mqkh_ 18 LKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCV 97 (123)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCcccceeEE
Confidence 47999999875 5688999977533211 12222222 379999998888889999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 r~~ 100 (123)
T d1mqkh_ 98 RHE 100 (123)
T ss_dssp EEE
T ss_pred ecC
Confidence 543
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.66 E-value=9.5e-08 Score=57.88 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=52.7
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|. ....+.|+|..+.+-++ .+...... .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eDTavYYCA 97 (127)
T d2fx7h1 18 VTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCA 97 (127)
T ss_dssp EEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcccceEEEEe
Confidence 4799999986 46689999976532221 12222211 379999999899999999999999999999997
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 R~ 99 (127)
T d2fx7h1 98 RE 99 (127)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.65 E-value=2.2e-07 Score=55.47 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=50.7
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE--eeC------CCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS--YDS------SRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~--~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|......... +.|++.. +... ... ....+......+ ....|.|++++.
T Consensus 5 tQ~P~s~~~~~G~svtl~C~~s~~~~~~--~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~~ 80 (107)
T d1c5cl1 5 TQSPSSLSASLGERVSLTCRTSQEISGY--LSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSG--SDYSLTISSLES 80 (107)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTC--EEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEET--TEEEEEESSCCG
T ss_pred EccCCEEEECCCCCEEEEEEeCCCCCCC--EEEEEcCCCCcceeEEeccccccCCCCCceEecccC--CEEEEEEhhhcc
Confidence 4557778899999999999876543334 8999843 2211 110 111122222222 235699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+.+.
T Consensus 81 ~Dsa~YyCa~~~~ 93 (107)
T d1c5cl1 81 EDFADYYCLQYAS 93 (107)
T ss_dssp GGCSEEEEEECSS
T ss_pred cCCeEEEEecCcC
Confidence 9999999987653
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.65 E-value=1e-07 Score=57.92 Aligned_cols=82 Identities=22% Similarity=0.421 Sum_probs=51.2
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC-----eEEE----eeCC---------CCceeEEeecCceEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVIS----YDSS---------RGGVSVITEKGEVTTSY 151 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~-----~~~~----~~~~---------~~~~~~~~~~~~~~~~~ 151 (212)
++.|....+.+|+.++|.|...+... ...+.|++.. +.+. .... ...+.............
T Consensus 2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~-~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (115)
T d2atpb1 2 IQTPSSLLVQTNHTAKMSCEVKSISK-LTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPF 80 (115)
T ss_dssp EEECSEEEECTTSCEEEEEECCSSCC-SSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCE
T ss_pred EeeCCcEEEcCCCCEEEEEEEeCCCC-CCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEE
Confidence 35567788999999999999865332 2348999753 2121 1111 11122222222222346
Q ss_pred EEEeeeeecCCEEEEEEcccC
Q psy13371 152 LLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 152 l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|.|.+++.+|+|.|.|.+...
T Consensus 81 L~I~~~~~~Dsg~Y~Ca~~~~ 101 (115)
T d2atpb1 81 LSIMNVKPEDSDFYFCATVGS 101 (115)
T ss_dssp EEECSCCGGGCEEEEEEEECS
T ss_pred EeecccCCCCCcEEEEeEcCC
Confidence 999999999999999987643
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=1.8e-08 Score=60.48 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=44.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcc----eeeee--cc-eee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDI----HILTV--GS-YTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~----~~~~~--~~-~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|.........+.|+|.... .+... .. ... ...+|..+. .+++|+|.+++.+|+|.|+|.+.
T Consensus 17 V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~-----~ngSL~I~~v~~~D~G~Y~c~v~ 91 (107)
T d1l6za1 17 VLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-----SNGSLLFQMITMKDMGVYTLDMT 91 (107)
T ss_dssp EEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEEC-----TTSCEEECSCCGGGCEEEEEEEE
T ss_pred EEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEc-----ccccEEEcCCCchhCEEEEEEEE
Confidence 46899754445678999986531 11110 00 000 113577665 45689999999999999999997
Q ss_pred CCC
Q psy13371 71 TQP 73 (212)
Q Consensus 71 ~~~ 73 (212)
+..
T Consensus 92 ~~~ 94 (107)
T d1l6za1 92 DEN 94 (107)
T ss_dssp ETT
T ss_pred ECC
Confidence 653
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.65 E-value=2.6e-07 Score=55.27 Aligned_cols=79 Identities=16% Similarity=0.322 Sum_probs=51.5
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEe-----eCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISY-----DSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~-----~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|......... +.|++.. + .+.. ......+....... ....|.|.+++.
T Consensus 5 tQsP~~l~v~~G~svtl~C~~s~~~~~~--~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~~ 80 (107)
T d1kcvl1 5 TQSPKSMGMSVGEAVTLNCKASENVGTY--VSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSA--TDFTLTISSVQA 80 (107)
T ss_dssp EESCSEEEEETTCCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCG
T ss_pred ECcCCEEeECCCCCEEEEEEecCCcCCc--eEEEEcccCCCCEEEEEecccccCCccceEEeeccC--CeeecEEHhhee
Confidence 3567778899999999999986554444 9999853 2 1111 11111222222222 235699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+...
T Consensus 81 ~DSa~YyCa~~~~ 93 (107)
T d1kcvl1 81 DDDADYYCGQSYS 93 (107)
T ss_dssp GGCEEEEEEECSS
T ss_pred cCCceEEEEecCC
Confidence 9999999987543
|
| >d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.64 E-value=9.4e-08 Score=58.14 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=53.2
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ .+...... .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~eDtA~YYCA 97 (130)
T d1rzga1 18 VKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSEDTAVFYCA 97 (130)
T ss_dssp EEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCCccEEEEEE
Confidence 47999999874 6789999976532211 12222222 379999999888999999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 r~~ 100 (130)
T d1rzga1 98 SPY 100 (130)
T ss_dssp ECC
T ss_pred Eec
Confidence 543
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.64 E-value=1.2e-07 Score=56.64 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=51.4
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEe-----eCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISY-----DSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~-----~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|...+..... +.|++.. + .+.. ......+......+. ...|.|+++..
T Consensus 5 tQsP~~ltv~~G~svtl~C~~s~~~~~~--~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~--~~~L~I~~~~~ 80 (107)
T d1ospl1 5 SQSSSSFSVSLGDRVTITCKASEDIYSR--LAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGK--DYTLSITSLQT 80 (107)
T ss_dssp ECCCSEEEECTTCCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSS--SEEEEESSCCG
T ss_pred EeeCCEEEECCCCCEEEEEecCCCcccc--cEEEEcCCCccceeEEeeccccCCccccccceecCCC--eEEeEEccccc
Confidence 3457778899999999999886543334 8999853 1 1111 111122333332222 25699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+...
T Consensus 81 ~Dsa~YyCa~~~~ 93 (107)
T d1ospl1 81 EDVATYFCQQYWS 93 (107)
T ss_dssp GGCSEEEEEECSS
T ss_pred ccCCcEEEeeccC
Confidence 9999999987654
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.64 E-value=9.7e-08 Score=58.36 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=49.7
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCC--CCCceEEEEEcCe------EEEee----------CCCCceeEEeecCceEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSP--EPPAYIFWYHHDE------VISYD----------SSRGGVSVITEKGEVTTSY 151 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~--~p~~~v~W~~~~~------~~~~~----------~~~~~~~~~~~~~~~~~~~ 151 (212)
...|.+..+..|+.++|.|...... .....+.|++... .+... ....++.....+.......
T Consensus 3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 82 (119)
T d1neua_ 3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS 82 (119)
T ss_dssp EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence 4556778899999999999875322 2334689986321 11000 0011122221111111135
Q ss_pred EEEeeeeecCCEEEEEEcccC
Q psy13371 152 LLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 152 l~i~~~~~~d~g~y~C~~~n~ 172 (212)
|.|++++.+|+|.|.|.+.++
T Consensus 83 L~I~~v~~~DsG~Y~C~v~~~ 103 (119)
T d1neua_ 83 IVIHNLDYSDNGTFTCDVKNP 103 (119)
T ss_dssp EEECSCCGGGCEEEEEEEEC-
T ss_pred EEECCCChHHCEEEEEEEEEC
Confidence 999999999999999999874
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.64 E-value=7.9e-08 Score=57.96 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=51.5
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+..-+. ........ .+|+++..+...+...|+|.+++.+|++.|.|.
T Consensus 18 v~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eDsAvYYCA 97 (119)
T d1qnzh_ 18 VKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDDSAVYYCA 97 (119)
T ss_dssp EEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGGCEEEEEE
T ss_pred EEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccceeEEEEE
Confidence 47999999863 5679999976432211 11111111 379999988888889999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 ~~~ 100 (119)
T d1qnzh_ 98 IHY 100 (119)
T ss_dssp ECS
T ss_pred Eec
Confidence 554
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.64 E-value=8e-08 Score=58.01 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=51.9
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-+. ........ .+|+++.+|...+...|+|++++.+|++.|.|.
T Consensus 18 v~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eDtAvYYCA 97 (121)
T d1j05b_ 18 VKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCA 97 (121)
T ss_dssp EEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCcceEEEeE
Confidence 47999999864 5789999976533211 12222222 369999988888889999999999999999997
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 r~ 99 (121)
T d1j05b_ 98 PF 99 (121)
T ss_dssp EE
T ss_pred ee
Confidence 54
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.64 E-value=7.5e-08 Score=58.10 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=52.7
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ .+...... .+||++++|...+...|+|++++.+|.+.|.|.
T Consensus 18 l~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eDTAvYYCA 97 (122)
T d1bz7b1 18 RKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCT 97 (122)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccCceEEEee
Confidence 46999999974 5789999976532221 11112211 389999998888889999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 r~~ 100 (122)
T d1bz7b1 98 RGG 100 (122)
T ss_dssp EEC
T ss_pred cCC
Confidence 543
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.64 E-value=1.5e-07 Score=57.24 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=53.1
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|. ....+.|+|..+.+-++ ..+..... .+|+.+++|...+...|+|++++.+|++.|.|.
T Consensus 17 l~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDtAvYyCA 96 (130)
T d1rhhb1 17 VQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSDDTAVYYCA 96 (130)
T ss_dssp EEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCCCcEEEEEE
Confidence 4799999996 46789999977532221 12222222 379999999888999999999999999999997
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 97 r~ 98 (130)
T d1rhhb1 97 RD 98 (130)
T ss_dssp EE
T ss_pred ee
Confidence 54
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.63 E-value=9e-08 Score=57.67 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=52.6
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eDtAvYYCA 97 (121)
T d1ol0a_ 18 LRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA 97 (121)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccccceEEEEE
Confidence 46999999874 5689999876532221 11122212 379999998888999999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 r~~ 100 (121)
T d1ol0a_ 98 REP 100 (121)
T ss_dssp ECC
T ss_pred Eec
Confidence 543
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=7.4e-08 Score=58.37 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=50.2
Q ss_pred CeeEeeeCCC--CCceEEEEeeCccee---e-eecc-ee---eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHI---L-TVGS-YT---YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~---~-~~~~-~~---~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|..++. ....+.|+|...... + .... .. ....+|+.+..+...+..+|+|.+++.+|+|.|.|.+.
T Consensus 17 vtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~ 96 (113)
T d1smoa_ 17 LDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIY 96 (113)
T ss_dssp EEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred EEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCceEEEEEE
Confidence 4689988643 456889998654211 1 1111 10 11236899887778888999999999999999999987
Q ss_pred CC
Q psy13371 71 TQ 72 (212)
Q Consensus 71 ~~ 72 (212)
..
T Consensus 97 ~~ 98 (113)
T d1smoa_ 97 QP 98 (113)
T ss_dssp CT
T ss_pred CC
Confidence 64
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=8.9e-08 Score=58.07 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=46.8
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcce----e--eee-cce-ee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIH----I--LTV-GSY-TY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~----~--~~~-~~~-~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.+.+.. ...+.|+|..... + +.. ... .. ....|+.... ..+...|+|.+++.+|+|.|.|.
T Consensus 18 vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~l~~~Dsg~YyCa 95 (114)
T d1akjd_ 18 VELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR--LGDTFVLTLSDFRRENEGYYFCS 95 (114)
T ss_dssp EEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE--ETTEEEEEESSCCGGGCEEEEEE
T ss_pred EEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC--CCCChhcEEccCCCCCCEEEeEe
Confidence 46999987754 5679999966321 1 111 111 11 1136777764 34578999999999999999998
Q ss_pred ecCC
Q psy13371 69 LSTQ 72 (212)
Q Consensus 69 ~~~~ 72 (212)
+...
T Consensus 96 ~~~~ 99 (114)
T d1akjd_ 96 ALSN 99 (114)
T ss_dssp EEET
T ss_pred EcCC
Confidence 7754
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=98.63 E-value=1e-07 Score=57.82 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=52.7
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ .+...... .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eDTA~YYCA 97 (127)
T d2fb4h1 18 LRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPEDTGVYFCA 97 (127)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecceeEEEEE
Confidence 47999999974 5789999977532222 11122211 379999999899999999999999999999997
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 r~ 99 (127)
T d2fb4h1 98 RD 99 (127)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=98.63 E-value=1.2e-07 Score=57.66 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=53.4
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ .+....+. .+|+++++|...+...|+|.+++.+|++.|.|.
T Consensus 18 l~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eDTAvYYCA 97 (135)
T d1ieha_ 18 LRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSEDTAVYYCA 97 (135)
T ss_dssp EEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSSCEEEEEE
T ss_pred eEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcccceeeEEE
Confidence 47999999874 5789999976532211 11122222 379999998888889999999999999999997
Q ss_pred ecCC
Q psy13371 69 LSTQ 72 (212)
Q Consensus 69 ~~~~ 72 (212)
....
T Consensus 98 r~~~ 101 (135)
T d1ieha_ 98 KYSG 101 (135)
T ss_dssp EBSS
T ss_pred EecC
Confidence 6643
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.62 E-value=8.1e-08 Score=57.56 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=52.2
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........ .+|+++++|...+...|+|.+++.+|.+.|.|.
T Consensus 18 l~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvYYCA 97 (119)
T d1eapb1 18 VKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFCK 97 (119)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCcceEEEEE
Confidence 47999999974 5689999976532221 11122222 379999998888889999999999999999997
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 r~ 99 (119)
T d1eapb1 98 RS 99 (119)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=98.62 E-value=1.2e-07 Score=56.78 Aligned_cols=71 Identities=11% Similarity=0.187 Sum_probs=52.7
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eDtAvYYCA 97 (118)
T d1ct8b1 18 VKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCA 97 (118)
T ss_dssp EEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCcceEEEEe
Confidence 47999999864 6789999977533221 11122222 269999998888899999999999999999996
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 r~~ 100 (118)
T d1ct8b1 98 RYR 100 (118)
T ss_dssp EEC
T ss_pred eec
Confidence 543
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.62 E-value=6.3e-08 Score=58.47 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=52.2
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE--ee------CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS--YD------SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~--~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
+.+|..+.+.+|+.++|.|...+.......+.|+++. +.+. .. .....+.....+.......|.|+++..
T Consensus 4 ltQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~ 83 (111)
T d1cd0a_ 4 LNQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKT 83 (111)
T ss_dssp EECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCG
T ss_pred EecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCc
Confidence 3446678899999999999886543222348999863 2111 00 011122333322222356799999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|++.|.|.....
T Consensus 84 ~Dsa~YyCA~~~~ 96 (111)
T d1cd0a_ 84 EDEADYYCQSYDA 96 (111)
T ss_dssp GGCEEEEEEEEET
T ss_pred ccCcEEEEeeccC
Confidence 9999999986543
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=98.62 E-value=1.1e-07 Score=57.51 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=52.0
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ .+...... .+|+++++|...+...|+|.+++.+|++.|.|.
T Consensus 18 l~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eDtavYYCA 97 (126)
T d1dfbh1 18 LRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYCV 97 (126)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCcceEEEEE
Confidence 47999999975 5689999977532221 12222212 389999998888999999999999999999996
Q ss_pred e
Q psy13371 69 L 69 (212)
Q Consensus 69 ~ 69 (212)
.
T Consensus 98 r 98 (126)
T d1dfbh1 98 K 98 (126)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.62 E-value=1.6e-07 Score=57.25 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=53.0
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. .-.+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 17 l~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eDtA~YYCA 96 (133)
T d1rzfh1 17 VKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDDTAVYYCA 96 (133)
T ss_dssp EEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCCCEEEEee
Confidence 47999999974 5689999976532221 12222222 389999998889999999999999999999996
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 97 r~ 98 (133)
T d1rzfh1 97 SN 98 (133)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.62 E-value=1.1e-07 Score=57.40 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=52.1
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~eDTA~YYCA 97 (124)
T d2b1hh1 18 LKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPSDTALYYCA 97 (124)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccccceEEEEe
Confidence 47999999975 4678999976532222 12222222 389999998888999999999999999999996
Q ss_pred e
Q psy13371 69 L 69 (212)
Q Consensus 69 ~ 69 (212)
.
T Consensus 98 R 98 (124)
T d2b1hh1 98 R 98 (124)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=6.7e-08 Score=59.36 Aligned_cols=70 Identities=19% Similarity=0.388 Sum_probs=47.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce-------eeeec---c-eee----ecCCceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH-------ILTVG---S-YTY----TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~-------~~~~~---~-~~~----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.+.+...+.+.|+|..+.. ++... . ... ....|+...+ ...+...|+|.+++.+|+|.|
T Consensus 19 vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~L~I~~~~~~Dsg~Y 97 (122)
T d1nezg_ 19 VDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMR-DTNNKYVLTLNKFSKENEGYY 97 (122)
T ss_dssp EEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEE-ETTTEEEEEESSCCGGGCEEE
T ss_pred EEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEEC-CCCCEeEEEEcccccCCCEEE
Confidence 469999998888899999854211 11111 0 111 1124666654 445678999999999999999
Q ss_pred EEEecC
Q psy13371 66 ECQLST 71 (212)
Q Consensus 66 ~C~~~~ 71 (212)
.|.+..
T Consensus 98 yCa~~~ 103 (122)
T d1nezg_ 98 FCSVIS 103 (122)
T ss_dssp EEEEEE
T ss_pred EeeEeC
Confidence 998754
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.62 E-value=1.2e-07 Score=57.14 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=53.1
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCA 97 (124)
T d1yedb1 18 VKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSEDSAVYFCT 97 (124)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCCcceEEEec
Confidence 47999999974 5689999976522211 12222222 379999998889999999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 98 R~~ 100 (124)
T d1yedb1 98 RWG 100 (124)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=98.62 E-value=1.3e-07 Score=56.75 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=52.9
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeeee---------cceeeecC---CceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILTV---------GSYTYTSD---QRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~~---------~~~~~~~~---~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.++|. ..-.+.|+|..+.+-++. +......+ +|+++++|...+...|+|++++.+|++.|.
T Consensus 18 l~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~eDtAvYY 97 (120)
T d1dlfh_ 18 MKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRAEDTGIYY 97 (120)
T ss_dssp EEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred eEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccCCCceEEE
Confidence 4799999987 467899999765332211 11122222 699999988889999999999999999999
Q ss_pred EEecC
Q psy13371 67 CQLST 71 (212)
Q Consensus 67 C~~~~ 71 (212)
|....
T Consensus 98 CA~~~ 102 (120)
T d1dlfh_ 98 CTGIY 102 (120)
T ss_dssp EEEEB
T ss_pred eeEec
Confidence 97543
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.62 E-value=2.6e-07 Score=55.16 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=50.1
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEee-----CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYD-----SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
+.+|+.+.+.+|+.++|.|......... +.|++.. + .+... .....+.....++ ....|.|++++.
T Consensus 4 ltQp~s~~~~~G~svtL~C~~s~~~~~~--~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~--~~~~L~I~~~~~ 79 (106)
T d1lk3l1 4 LTQPPALTVSPGEKLTISCKASESVTSR--MHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG--TDFTLTIDPVEA 79 (106)
T ss_dssp EECCSEEEECTTSCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCG
T ss_pred EeeCCeEEECCCCCEEEEEEeCCCCCcc--EEEEecCCCCCcEEEEEecccccCCcCCceeeecCC--CEEEeEECCcCh
Confidence 3456678899999999999986543344 8999853 1 12111 1111222222222 235699999999
Q ss_pred cCCEEEEEEccc
Q psy13371 160 KDSGKYSCSPSN 171 (212)
Q Consensus 160 ~d~g~y~C~~~n 171 (212)
+|+|.|.|....
T Consensus 80 ~Dsa~YyCa~~~ 91 (106)
T d1lk3l1 80 DDTAIYFCQQSW 91 (106)
T ss_dssp GGCEEEEEEECS
T ss_pred hhCCCccccccc
Confidence 999999997653
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.62 E-value=1.3e-07 Score=56.49 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=51.4
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-++ ........ .+|++++.+...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eDtAvYYCA 97 (117)
T d1mfah1 18 VKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSEDSAVYYCT 97 (117)
T ss_dssp EEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCcceEEEEe
Confidence 47999999864 6789999976533221 11222222 369999988888889999999999999999996
Q ss_pred e
Q psy13371 69 L 69 (212)
Q Consensus 69 ~ 69 (212)
.
T Consensus 98 r 98 (117)
T d1mfah1 98 R 98 (117)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.61 E-value=2.4e-07 Score=55.43 Aligned_cols=79 Identities=24% Similarity=0.371 Sum_probs=51.1
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE---EEee-----CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV---ISYD-----SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~---~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|......... +.|++.. +. +... .....+.....++. ...|.|.+++.
T Consensus 5 tQ~p~~l~v~~G~~vtL~C~~~~~~~~~--~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~--~~~L~I~~~~~ 80 (107)
T d1j1pl_ 5 TQSPATLSVTPGNSVSLSCRASQSIGNN--LHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGT--DFTLSINSVET 80 (107)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT--EEEEEESSCCG
T ss_pred ECcCCeEEECCCCCEEEEEEecCCCCcc--eEEEEeCCCCccEEeeecccCCCceeCCcceecccCC--EEEEEEcccCc
Confidence 3456778899999999999876443344 8999863 21 1110 11112222222222 35699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+.+.
T Consensus 81 ~Dsa~YyCa~~~~ 93 (107)
T d1j1pl_ 81 EDFGMYFCQQANS 93 (107)
T ss_dssp GGCEEEEEEECSS
T ss_pred CCCEEEEEEcCCC
Confidence 9999999976643
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=3.7e-08 Score=60.53 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=46.6
Q ss_pred CeeEeeeCCCC-------CceEEEEeeCcceeee----e--cceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEE
Q psy13371 1 MLHQRKLKGLL-------PTRVSWIRHRDIHILT----V--GSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVY 65 (212)
Q Consensus 1 ~~l~C~~~~~p-------~~~v~W~~~~~~~~~~----~--~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y 65 (212)
+.|.|.++..+ ...+.|++........ . +.... ...+|+.+..+...++.+|+|.+++.+|+|.|
T Consensus 19 V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y 98 (121)
T d2g5ra1 19 VHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRY 98 (121)
T ss_dssp EEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECCCChHHCEEE
Confidence 46899885321 2468899865322111 1 00000 11368888765566788999999999999999
Q ss_pred EEEecCCC
Q psy13371 66 ECQLSTQP 73 (212)
Q Consensus 66 ~C~~~~~~ 73 (212)
.|.+..++
T Consensus 99 ~C~v~~~~ 106 (121)
T d2g5ra1 99 FFRMEKGN 106 (121)
T ss_dssp EEEEEETT
T ss_pred EEEEEeCC
Confidence 99997653
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.61 E-value=1.3e-07 Score=57.55 Aligned_cols=83 Identities=24% Similarity=0.366 Sum_probs=52.2
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeE---EEeeCC--------CCceeEEeecCceEEEEEEEe
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEV---ISYDSS--------RGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~---~~~~~~--------~~~~~~~~~~~~~~~~~l~i~ 155 (212)
+.+.|+.+.+.+|+.++|.|...... ....+.|++. ++. +..... ...+.....+.......|.|.
T Consensus 3 VtQ~p~~~~~~~G~~vtL~C~~~~~~-~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (116)
T d1tvda_ 3 VTQSSPDQTVASGSEVVLLCTYDTVY-SNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS 81 (116)
T ss_dssp EECCSCCEEEETTCCEEECCEEECCS-SSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred EEccCCCEEEcCCCCEEEEEEEcCCc-cCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence 34557778899999999999886432 2234899973 221 111111 111222222233334569999
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
+++.+|+|.|.|.+...
T Consensus 82 ~~~~~Dsg~YyCa~~~~ 98 (116)
T d1tvda_ 82 PVRTEDSATYYCAFTLP 98 (116)
T ss_dssp SCCGGGCEEEEEEEECT
T ss_pred CccccccccceeeEecC
Confidence 99999999999987653
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.60 E-value=1.4e-07 Score=57.95 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=51.2
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcceeeee------cceeee---cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEE
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIHILTV------GSYTYT---SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~~~~~------~~~~~~---~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 67 (212)
+.|.|.++|.. ...+.|+|..+.+-++. ...... -.+||++.+|...+...|+|++++.+|++.|.|
T Consensus 18 l~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~eDtAvYYC 97 (132)
T d1tjgh1 18 LTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPVDTATYFC 97 (132)
T ss_dssp EEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred eEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcccceEEEE
Confidence 46999999864 23689999764222111 111111 147999998888888999999999999999999
Q ss_pred EecC
Q psy13371 68 QLST 71 (212)
Q Consensus 68 ~~~~ 71 (212)
....
T Consensus 98 Ar~~ 101 (132)
T d1tjgh1 98 AHRR 101 (132)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7654
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.60 E-value=2.4e-07 Score=55.25 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=50.6
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e-E-E-Eee-----CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E-V-I-SYD-----SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~-~-~-~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|......... +.|++.. . + + ... .....+......+. ...|.|+++..
T Consensus 4 tQsP~~l~~~~G~svtl~C~~s~~~~~~--~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~L~I~~~~~ 79 (106)
T d1a0ql1 4 TQSPSSLSASLGGKVTITCKASQDIKKY--IGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGR--DYSFSISNLEP 79 (106)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTC--EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETT--EEEEEECSCCG
T ss_pred ECcCCEEEECCCCCEEEEEEcCCCCCCC--eEEEECCCCCcEEEEEEccccccCCCCcceEeecCCC--EeeeEehhhcc
Confidence 3456777899999999999875443344 8999853 1 1 1 111 11112222222222 35699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+...
T Consensus 80 ~DsA~YyCa~~~~ 92 (106)
T d1a0ql1 80 EDIATYYCLQYYN 92 (106)
T ss_dssp GGCSEEEEEECSS
T ss_pred cCCEeEEEEEeCC
Confidence 9999999987653
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.60 E-value=9.5e-08 Score=57.06 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=48.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeee----cc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTV----GS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|..++.....+.|+|......... .. .......||+... ..+..+|+|.+++.+|+|.|.|.....
T Consensus 19 vtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~~~ 93 (106)
T d1i8ka_ 19 VTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG--TGTDFVFTIENTLSEDVGDYYCLQSFN 93 (106)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred EEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeC--CCCeeeecccCCccccCEEEeEecCcc
Confidence 4699998877677899998654222111 11 1112246887763 446789999999999999999986653
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.60 E-value=1e-07 Score=58.02 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=50.1
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcce----eeee-cceee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIH----ILTV-GSYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~----~~~~-~~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++. ....+.|+|..... +... ..... ...+||.+..+......+|+|.+++.+|+|.|.|.+..
T Consensus 18 vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 97 (116)
T d1tvda_ 18 VVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTL 97 (116)
T ss_dssp EEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccccccceeeEec
Confidence 3689998654 56789999854311 1111 11111 12369998876777788999999999999999998765
Q ss_pred C
Q psy13371 72 Q 72 (212)
Q Consensus 72 ~ 72 (212)
.
T Consensus 98 ~ 98 (116)
T d1tvda_ 98 P 98 (116)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.60 E-value=2.3e-07 Score=55.94 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=52.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.....+.|+|..+... +.. ........+|+....+......+|+|.+++.+|+|.|.|....
T Consensus 18 vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 93 (111)
T d1bd2d1 18 SILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAAME 93 (111)
T ss_dssp EEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEES
T ss_pred EEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEeeccC
Confidence 4699998888777899999654221 111 1111223478888877777899999999999999999998764
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=9.2e-08 Score=56.26 Aligned_cols=75 Identities=16% Similarity=0.300 Sum_probs=45.3
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEee---------C-CCCceeEEe-ecCceEEEEEEEeeeeecCCEE
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYD---------S-SRGGVSVIT-EKGEVTTSYLLIQQAELKDSGK 164 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~---------~-~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~ 164 (212)
+...+|++++|.|......... +.|++........ . ....+.... ........+|.|++++.+|+|.
T Consensus 4 V~~~~G~svtL~C~~s~~~~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~ 81 (97)
T d2nxyb1 4 VLGKKGDTVELTCTASQKKSIQ--FHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 81 (97)
T ss_dssp EEEETTSCEEECCBCSSSSCCC--EEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred EEEEcCCcEEEEEEEecCCCce--EEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEE
Confidence 3467899999999876443334 8999865422110 0 011111110 0101112359999999999999
Q ss_pred EEEEcccC
Q psy13371 165 YSCSPSNA 172 (212)
Q Consensus 165 y~C~~~n~ 172 (212)
|.|.+.+.
T Consensus 82 Y~C~v~~~ 89 (97)
T d2nxyb1 82 YICEVEDQ 89 (97)
T ss_dssp EEEEETTE
T ss_pred EEEEEecC
Confidence 99999765
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.59 E-value=3.6e-08 Score=59.90 Aligned_cols=81 Identities=27% Similarity=0.412 Sum_probs=52.9
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEee-CCC----CceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYD-SSR----GGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~-~~~----~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|........ .+.|++... .+... ... ..+............+|.|+++..
T Consensus 4 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~--~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~ 81 (114)
T d2cdea1 4 EQSPQSLIILEGKNCTLQCNYTVSPFS--NLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL 81 (114)
T ss_dssp EEECSEEEEETTCCCEEEEEECCSCCS--EEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG
T ss_pred EeeCCEEEEeCCCCEEEEEEEcCCCcc--CceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh
Confidence 345677889999999999998654333 489997531 12111 111 111222222333456799999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+...
T Consensus 82 ~Dsg~Y~Ca~~~~ 94 (114)
T d2cdea1 82 SDSASYICVVSDR 94 (114)
T ss_dssp GGCSEEEEEEECS
T ss_pred hhCcccceeeecC
Confidence 9999999998764
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.59 E-value=1.4e-07 Score=57.86 Aligned_cols=70 Identities=24% Similarity=0.367 Sum_probs=50.0
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcce----eeee---cceeee---cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIH----ILTV---GSYTYT---SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~----~~~~---~~~~~~---~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|. ....+.|+|..+.. +... +..... ..+||.+.++...+...|+|.+++.+|+|.|.|.
T Consensus 19 ~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA 98 (123)
T d1hxmb1 19 ARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCA 98 (123)
T ss_dssp EEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccccCcEEEEe
Confidence 3699999875 35689999976422 1111 111221 2368999877777788999999999999999997
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 99 ~~ 100 (123)
T d1hxmb1 99 LW 100 (123)
T ss_dssp EE
T ss_pred ee
Confidence 64
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.59 E-value=1.7e-07 Score=56.84 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=52.4
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. .-.+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eDtAvYYCA 97 (125)
T d1rihh1 18 MKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSEDSAVYYCA 97 (125)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcccceEEEEe
Confidence 47999999875 5689999977532221 12222221 379999988888899999999999999999997
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 R~ 99 (125)
T d1rihh1 98 RE 99 (125)
T ss_dssp EE
T ss_pred ee
Confidence 54
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.59 E-value=2.2e-07 Score=55.42 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=50.4
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEE--Eee------CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVI--SYD------SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~--~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|......... +.|++.. +.. ... .....+......+ ....|.|+++..
T Consensus 5 tQsP~slsv~~G~svtl~C~~s~~~~~~--~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~--~~~~L~I~~~~~ 80 (106)
T d1i8ka_ 5 TQSPASLSVATGEKVTIRCMTSTDIDDD--MNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTG--TDFVFTIENTLS 80 (106)
T ss_dssp EEECSEEECCTTCCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET--TEEEEEESSCCG
T ss_pred EeeCCEEEECCCCCEEEEEEeCCCCCcc--EEEEeCCCCCceEEEEeccCccccCCCcceeEeCCC--CeeeecccCCcc
Confidence 3456777899999999999875443344 8999752 211 111 1111222222222 235699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+.+.
T Consensus 81 ~Dsa~YyCa~~~~ 93 (106)
T d1i8ka_ 81 EDVGDYYCLQSFN 93 (106)
T ss_dssp GGCEEEEEEECSS
T ss_pred ccCEEEeEecCcc
Confidence 9999999986654
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.59 E-value=1.7e-07 Score=56.90 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=50.1
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|. ..-.+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 17 l~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eDTAvYYCA 96 (126)
T d1rjca1 17 LRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPEDTAMYYCA 96 (126)
T ss_dssp EEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcccCceeEEE
Confidence 4799999986 46789999977532221 11222222 269999998888889999999999999999997
Q ss_pred ecC
Q psy13371 69 LST 71 (212)
Q Consensus 69 ~~~ 71 (212)
...
T Consensus 97 r~~ 99 (126)
T d1rjca1 97 ADT 99 (126)
T ss_dssp ECC
T ss_pred eec
Confidence 553
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.2e-07 Score=56.88 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=48.5
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE---EEeeCC-----CCceeEEeecCceEEEEEEEeeeeecCCEE
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV---ISYDSS-----RGGVSVITEKGEVTTSYLLIQQAELKDSGK 164 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~---~~~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 164 (212)
.+.+.+|+.++|.|...........+.|++.. .. +..... ...+.....+.......|.|++++.+|+|.
T Consensus 5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~ 84 (108)
T d1hkfa_ 5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH 84 (108)
T ss_dssp EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence 35678999999999875332233346898743 11 111111 112333333333334679999999999999
Q ss_pred EEEEcccC
Q psy13371 165 YSCSPSNA 172 (212)
Q Consensus 165 y~C~~~n~ 172 (212)
|.|.+...
T Consensus 85 Y~C~v~~~ 92 (108)
T d1hkfa_ 85 YWCRIYRP 92 (108)
T ss_dssp EEEEEECT
T ss_pred EEEEEecC
Confidence 99998754
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.57 E-value=2.9e-07 Score=54.96 Aligned_cols=79 Identities=18% Similarity=0.329 Sum_probs=50.4
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEee-----CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYD-----SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|......... +.|++.. + .+... .....+......+ ....|.|.+++.
T Consensus 5 tQ~p~~l~~~~G~svtl~C~~s~~~~~~--~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~--~~~~L~I~~~~~ 80 (107)
T d1mexl1 5 TQSQKFMSTSLGNRVSVTCKASQNVGTN--VAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSG--TDFTLTINNVQS 80 (107)
T ss_dssp ECCCSEEEECTTSCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET--TEEEEEESSCCG
T ss_pred EcCCCeEEECCCCCEEEEEEeCCCCCCc--eEEEeccCCcccEEEEEeccccccccCCCeeecCCC--Ceeeeeechhhe
Confidence 3556677899999999999875443344 8999853 1 11111 1111222222222 235699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|++.|.|.+...
T Consensus 81 ~DsA~YyCa~~~~ 93 (107)
T d1mexl1 81 EDLAEYFCQQYNS 93 (107)
T ss_dssp GGCSEEEEEECSS
T ss_pred ecceeEEEeECCC
Confidence 9999999986643
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.57 E-value=2.8e-07 Score=55.08 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=51.1
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEee-----CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYD-----SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|......... +.|++.. + .+... .....+.....++ ....|.|.+++.
T Consensus 5 tQ~P~sl~~~~G~svtL~C~~s~~~~~~--~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~~ 80 (107)
T d1tjgl1 5 TQSPSSLSASVGDRITITCRASQGVTSA--LAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSG--TEFTLTISTLRP 80 (107)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET--TEEEEEESSCCG
T ss_pred EeeCCEEEECCCCCEEEEEEECCCCCcc--EEEEeccCCccceEEEeecccccCCCCcceEEeccC--CEEEEEecccee
Confidence 4557788899999999999986443344 8999853 1 22111 1111122222222 235699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|++.|.|.+.+.
T Consensus 81 ~DsA~YyCa~~~~ 93 (107)
T d1tjgl1 81 EDFATYYCQQLHF 93 (107)
T ss_dssp GGCSEEEEEECSB
T ss_pred CcCceEEEEECcC
Confidence 9999999976643
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=98.57 E-value=1.8e-07 Score=56.26 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=52.6
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee-------ec--ceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT-------VG--SYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~-------~~--~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.++|.. ...+.|+|..+.+-++ .. ...... .+|+++++|...+...|+|++++.+|++.|.
T Consensus 18 l~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvYY 97 (122)
T d1q9rb1 18 LRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSATYY 97 (122)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred EEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeeccCcceEEE
Confidence 46999999974 4589999876532111 11 112222 2799999988889999999999999999999
Q ss_pred EEecC
Q psy13371 67 CQLST 71 (212)
Q Consensus 67 C~~~~ 71 (212)
|....
T Consensus 98 Car~~ 102 (122)
T d1q9rb1 98 CARDH 102 (122)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 98654
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.56 E-value=1.4e-07 Score=56.80 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=49.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----e-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----V-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.....+.|+|..+..... . .........++....+.......|+|.+++.+|+|.|.|....
T Consensus 17 vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 92 (110)
T d1u3ha1 17 AILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASA 92 (110)
T ss_dssp EEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEECCEE
T ss_pred EEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeeeecC
Confidence 468999988777789999875322211 1 1111122356666655666788999999999999999998653
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.56 E-value=3.4e-07 Score=54.61 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=51.0
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC-----eEEEee-----CCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYD-----SSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+.|..+.+.+|+.++|.|......... +.|++.. +.+... .....+.....++ ....|.|.+++.+
T Consensus 5 Q~P~sl~~~~G~svtL~C~~~~~~~~~--~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~--~~~~L~I~~~~~~ 80 (106)
T d1op3k1 5 QSPSTLSASVGDTITITCRASQSIETW--LAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSG--TEFTLTISGLQFD 80 (106)
T ss_dssp EECSEEEECTTCEEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET--TEEEEEEESCCGG
T ss_pred CcCCeEEECCCCCEEEEEEeCCCCCCc--EEEEecCCCCCCEEEEEccccCCCCcCCceeeeccC--CEEEEEEcccccc
Confidence 557778899999999999886543344 8999863 122111 1111222222222 2356999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+...
T Consensus 81 Dsa~YyCa~~~~ 92 (106)
T d1op3k1 81 DFATYHCQHYAG 92 (106)
T ss_dssp GCSEEEEEEECS
T ss_pred CCCcEeeeeCCC
Confidence 999999986643
|
| >d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.56 E-value=4.9e-08 Score=58.39 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=51.8
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeee------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILT------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.++|.. .-.+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|++.|.|..
T Consensus 18 l~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDTAvYyCAr 97 (116)
T d1fn4b1 18 LSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTR 97 (116)
T ss_dssp ECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCCEEEEEEE
T ss_pred eEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCCEEEEEEe
Confidence 47999999864 5789999976432221 11222211 2799999988888899999999999999999965
Q ss_pred c
Q psy13371 70 S 70 (212)
Q Consensus 70 ~ 70 (212)
.
T Consensus 98 ~ 98 (116)
T d1fn4b1 98 D 98 (116)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.56 E-value=1.8e-07 Score=56.36 Aligned_cols=80 Identities=19% Similarity=0.330 Sum_probs=50.7
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEee-----CCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYD-----SSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
.+|+.+.+.+|+.++|.|...+.......+.|++.. + .+... .....+.....++. ...|.|++++.+
T Consensus 5 tQp~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~--~~~L~I~~~~~~ 82 (111)
T d1rzfl1 5 TQPPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGT--SATLGITGLQTG 82 (111)
T ss_dssp BCCSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETT--EEEEEESSCCGG
T ss_pred eeCcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCC--EeeeEEeeeccc
Confidence 345678899999999999876432233348999752 1 11111 11112222222222 356999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+...
T Consensus 83 Dsa~YyCA~~~~ 94 (111)
T d1rzfl1 83 DEADYYCGTWDS 94 (111)
T ss_dssp GCSEEEEEEEET
T ss_pred cCcceEEeecCC
Confidence 999999987643
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.56 E-value=1.4e-07 Score=57.13 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=52.1
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceee-------eecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHIL-------TVGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~-------~~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|..+.+-+ +........ .+|+++++|...+...|+|++++.+|++.|.|.
T Consensus 18 l~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~eDtAvYYCA 97 (127)
T d1n0xh1 18 VKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCA 97 (127)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCCCceEEEEE
Confidence 47999999974 568999997653221 112222222 379999998888899999999999999999997
Q ss_pred e
Q psy13371 69 L 69 (212)
Q Consensus 69 ~ 69 (212)
.
T Consensus 98 R 98 (127)
T d1n0xh1 98 R 98 (127)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=98.56 E-value=1.2e-07 Score=57.35 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=49.5
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcceeee------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEE
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIHILT------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~~~~------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 67 (212)
+.|.|.++|.. ...+.|+|..+..-++ ........ .+|+++++|...+...|+|++++.+|++.|.|
T Consensus 18 v~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~eDsAvYyC 97 (123)
T d1r0ah1 18 FRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETADTAIYYC 97 (123)
T ss_dssp EEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred eEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccccceEEee
Confidence 46999998853 2467899875432221 11111111 26999998888888999999999999999999
Q ss_pred Eec
Q psy13371 68 QLS 70 (212)
Q Consensus 68 ~~~ 70 (212)
...
T Consensus 98 Ar~ 100 (123)
T d1r0ah1 98 AQS 100 (123)
T ss_dssp EEE
T ss_pred ccc
Confidence 743
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.56 E-value=4.8e-07 Score=54.04 Aligned_cols=78 Identities=17% Similarity=0.334 Sum_probs=50.3
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEee-----CCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYD-----SSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+.|..+.+.+|+.++|.|......... +.|++.. + .+... .....+......+. ...|.|++++.+
T Consensus 6 Q~P~sl~~~~G~svtl~C~~s~~~~~~--~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~--~~~L~I~~~~~~ 81 (107)
T d1d5il1 6 QSPSSMYASLGERVTITCKASQDINSY--LSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQ--DYSLTISSLEYE 81 (107)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT--EEEEEESSCCGG
T ss_pred eeCCEEEECCCCCEEEEEEcCCCCCCc--cceeEeccccCeEEEEEeccccccCcCCceeecccCC--EEEccccccCCc
Confidence 456777899999999999876544444 8899753 1 11111 11112222222222 356999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.....
T Consensus 82 Dsa~YyCa~~~~ 93 (107)
T d1d5il1 82 DMGIYYCLQYDE 93 (107)
T ss_dssp GCEEEEEEECSS
T ss_pred CCEEEEeeeccC
Confidence 999999987654
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=2.8e-07 Score=56.51 Aligned_cols=78 Identities=15% Similarity=0.312 Sum_probs=49.7
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeE------EEeeCC-CCc-----------ee-EEeecCceE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEV------ISYDSS-RGG-----------VS-VITEKGEVT 148 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~------~~~~~~-~~~-----------~~-~~~~~~~~~ 148 (212)
.+.|....+.+|++++|.|...+...+. +.|++. ++. +..... ... +. .....+ .
T Consensus 5 ~~~P~~~~~~~G~~vtL~C~~~~~~~~~--v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--~ 80 (122)
T d1nezg_ 5 RIFPKKMDAELGQKVDLVCEVLGSVSQG--CSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN--N 80 (122)
T ss_dssp EEESSCEEECTTCCEEEEEEEESCCSSC--EEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT--T
T ss_pred EEcCCEEEECCCCCEEEEEEEcCccCCC--EEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCC--C
Confidence 3456778899999999999987655555 899974 221 111111 100 10 111111 2
Q ss_pred EEEEEEeeeeecCCEEEEEEccc
Q psy13371 149 TSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 149 ~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
...|.|++++.+|+|.|.|.+..
T Consensus 81 ~~~L~I~~~~~~Dsg~YyCa~~~ 103 (122)
T d1nezg_ 81 KYVLTLNKFSKENEGYYFCSVIS 103 (122)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEE
T ss_pred EeEEEEcccccCCCEEEEeeEeC
Confidence 34699999999999999998763
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=98.55 E-value=1.8e-07 Score=56.96 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=51.8
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeee------------cceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTV------------GSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAG 63 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~------------~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G 63 (212)
+.|.|.++|.. .-.+.|+|..+.+-++. +...... .+|+++++|...+...|+|++++.+|++
T Consensus 18 l~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~l~~eDtA 97 (127)
T d1i3ua_ 18 LKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNSLKPEDTA 97 (127)
T ss_dssp EEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred eEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeeccccccee
Confidence 47999999874 57899999765321111 1112222 2699999988888999999999999999
Q ss_pred EEEEEec
Q psy13371 64 VYECQLS 70 (212)
Q Consensus 64 ~Y~C~~~ 70 (212)
.|.|...
T Consensus 98 vYYCAr~ 104 (127)
T d1i3ua_ 98 VYYCAAK 104 (127)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999754
|
| >d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=98.55 E-value=1.4e-07 Score=57.15 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=51.3
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcceeee------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIHILT------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~~~~------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|.. ...+.|+|+.+.+-++ ........ .+|+++++|...+...|+|.+++.+|.+.|.|.
T Consensus 18 l~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eDtAvYyCA 97 (127)
T d3cx5j1 18 LSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTEDTATYYCA 97 (127)
T ss_dssp EEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccccceEEEee
Confidence 47999999974 3578999976432221 11122222 269999998889999999999999999999997
Q ss_pred ec
Q psy13371 69 LS 70 (212)
Q Consensus 69 ~~ 70 (212)
..
T Consensus 98 r~ 99 (127)
T d3cx5j1 98 RS 99 (127)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.54 E-value=6.8e-08 Score=57.60 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=51.6
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcceeee-------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIHILT-------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~~~~-------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|.|.++|. ....+.|+|..+.+-++ ........ .+|+++++|...+...|+|++++.+|.+.|.|.
T Consensus 18 l~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~eDTAvYYCA 97 (117)
T d1b2wh1 18 LKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPEDTAVYYCA 97 (117)
T ss_dssp EEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGGGCEEEECC
T ss_pred EEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCCcceEEEEc
Confidence 4799999986 56789999976532211 11122222 279999998888899999999999999999995
Q ss_pred e
Q psy13371 69 L 69 (212)
Q Consensus 69 ~ 69 (212)
.
T Consensus 98 r 98 (117)
T d1b2wh1 98 R 98 (117)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.54 E-value=4.7e-08 Score=59.45 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=49.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee-----ecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT-----VGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..+......+.|+|.....-.. ..........++....+...+...|+|.+++++|+|.|.|.+..
T Consensus 19 vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 94 (115)
T d1lp9e1 19 VMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFL 94 (115)
T ss_dssp EEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceEEEEc
Confidence 468999988888899999976422111 11111122467777655555677899999999999999998754
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.54 E-value=3.3e-07 Score=55.60 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=47.7
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcc---e-e---eee--cceee----ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDI---H-I---LTV--GSYTY----TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~---~-~---~~~--~~~~~----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.+++. ....+.|+|..+. . + ... ..... ....|+....+.......|+|.+++.+|+|.|.
T Consensus 16 v~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~ 95 (115)
T d2atpb1 16 AKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDFYF 95 (115)
T ss_dssp EEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCCGGGCEEEE
T ss_pred EEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccCCCCCcEEE
Confidence 4699999874 5678999986421 1 1 000 11111 123567766656667789999999999999999
Q ss_pred EEecC
Q psy13371 67 CQLST 71 (212)
Q Consensus 67 C~~~~ 71 (212)
|....
T Consensus 96 Ca~~~ 100 (115)
T d2atpb1 96 CATVG 100 (115)
T ss_dssp EEEEC
T ss_pred EeEcC
Confidence 98764
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.53 E-value=6.7e-07 Score=54.74 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=50.3
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE---EEe-e---------CCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV---ISY-D---------SSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~---~~~-~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+..+...+|+.++|.|.+.+.......+.|++.. +. +.. . .....++....+.......|.|+++
T Consensus 8 ~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l 87 (123)
T d1hxmb1 8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV 87 (123)
T ss_dssp CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred CCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccc
Confidence 3456788999999999998653333348999853 21 111 0 0112233333333333456999999
Q ss_pred eecCCEEEEEEccc
Q psy13371 158 ELKDSGKYSCSPSN 171 (212)
Q Consensus 158 ~~~d~g~y~C~~~n 171 (212)
..+|++.|.|....
T Consensus 88 ~~~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 88 EKQDIATYYCALWE 101 (123)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred ccccCcEEEEeeeC
Confidence 99999999998653
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.53 E-value=1.9e-07 Score=55.82 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=48.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeee----c-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTV----G-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.........+.|+|..+...... . ......+.|+.... ...+..|+|.+++.+|+|.|.|....
T Consensus 19 vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~~ 92 (107)
T d1j1pl_ 19 VSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETEDFGMYFCQQAN 92 (107)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecc--cCCEEEEEEcccCcCCCEEEEEEcCC
Confidence 4689998877777899999775322211 1 11112246888764 45678999999999999999997654
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.52 E-value=7.6e-07 Score=53.27 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=50.4
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEee-----CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYD-----SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|......... +.|++.. + .+... .....+......+ ....|.|++++.
T Consensus 5 tQsP~~l~~~~G~svtL~C~~s~~~~~~--i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~--~~~~L~I~~~~~ 80 (109)
T d1mqkl_ 5 TQTPVSLSASVGETVTITCRASENIYSY--LAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSG--TQFSLKINSLLP 80 (109)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCG
T ss_pred ECcCCEEEECCCCCEEEEEEeCCCcCcc--cceeeccccCCCeEEEEeeccccCCcCCCEEEeccC--CEEEEEEccccc
Confidence 3557778899999999999886443344 8999853 1 11111 1111122222222 235699999999
Q ss_pred cCCEEEEEEccc
Q psy13371 160 KDSGKYSCSPSN 171 (212)
Q Consensus 160 ~d~g~y~C~~~n 171 (212)
+|+|.|.|.+..
T Consensus 81 ~DSa~YyCA~~~ 92 (109)
T d1mqkl_ 81 EDFGSYYCQHHY 92 (109)
T ss_dssp GGCEEEEEEECS
T ss_pred cCCeeEEEeeeC
Confidence 999999998763
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.52 E-value=5.9e-07 Score=53.83 Aligned_cols=79 Identities=15% Similarity=0.316 Sum_probs=51.2
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC-----eEEEee-----CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD-----EVISYD-----SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|...+..... +.|++.. +.+... .....+.....++. ...|.|++++.
T Consensus 7 tQsP~~l~~~~G~svtL~C~~s~~~~~~--~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~--~~~L~I~~l~~ 82 (109)
T d1bwwa_ 7 TQSPSSLSASVGDRVTITCQASQDIIKY--LNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGT--DYTFTISSLQP 82 (109)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCG
T ss_pred EeeCCEEEECCCCCEEEEEEecCCCCCc--ceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCC--EeEEEEeecee
Confidence 3456778899999999999986543344 8999853 122111 11112222222322 34699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+...
T Consensus 83 ~Dsa~YyCA~~~~ 95 (109)
T d1bwwa_ 83 EDIATYYCQQYQS 95 (109)
T ss_dssp GGCEEEEEEECSS
T ss_pred CcCceEEEeecCC
Confidence 9999999987643
|
| >d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.52 E-value=2.3e-07 Score=56.51 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=52.9
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeee---------cceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTV---------GSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~---------~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.++|.. ...+.|+|..+.+-++. +...... .+|+++++|...+...|+|++++.+|++.|.
T Consensus 18 l~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~eDTAvYY 97 (131)
T d3c2ah1 18 LRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYS 97 (131)
T ss_dssp EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred eEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccccCCceEEE
Confidence 47999999875 56899999775332211 1122222 3799999988889999999999999999999
Q ss_pred EEec
Q psy13371 67 CQLS 70 (212)
Q Consensus 67 C~~~ 70 (212)
|...
T Consensus 98 CAR~ 101 (131)
T d3c2ah1 98 CTTD 101 (131)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 9754
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.51 E-value=1.3e-07 Score=56.66 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=51.8
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeee---------cceeee---cCCceEEEeeCCCCeEEEEEcccCCCCCEEEE
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTV---------GSYTYT---SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYE 66 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~---------~~~~~~---~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 66 (212)
+.|.|.++|.. ...+.|+|..+.+-++. +..... -.+|+++++|...+...|+|++++.+|++.|.
T Consensus 18 l~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~~eDTAvYY 97 (121)
T d1nfdf1 18 LKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRVDDTAIYY 97 (121)
T ss_dssp EEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCCGGGCEECE
T ss_pred EEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccCCCcceEEE
Confidence 47999999975 56789999765322211 111211 23799999988889999999999999999999
Q ss_pred EEec
Q psy13371 67 CQLS 70 (212)
Q Consensus 67 C~~~ 70 (212)
|...
T Consensus 98 CAr~ 101 (121)
T d1nfdf1 98 CTRA 101 (121)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 9654
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.51 E-value=3.1e-07 Score=55.71 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=48.8
Q ss_pred CeeEeeeCCC-CCceEEEEeeCccee----eeec--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHI----LTVG--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~----~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++. ....+.|+|...... +... .......+|+....+...+..+|+|.+++.+|+|.|.|.+..
T Consensus 17 Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 94 (115)
T d1fo0a_ 17 VTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRG 94 (115)
T ss_dssp EEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccccccceeec
Confidence 4689998654 456799999664221 1111 111122367888766667788999999999999999998754
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.51 E-value=1.1e-07 Score=57.54 Aligned_cols=81 Identities=25% Similarity=0.338 Sum_probs=51.0
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEE-eeCCCC----ceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VIS-YDSSRG----GVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~-~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|........ .+.|++.. + .+. ...... .+.............|.|+++..
T Consensus 4 ~Q~P~~v~v~~G~sv~L~C~~s~~~~~--~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 81 (113)
T d2bnqd1 4 TQIPAALSVPEGENLVLNCSFTDSAIY--NLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP 81 (113)
T ss_dssp ECSSSEEEEETTCCEEEEEEESCCCEE--EEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred EeeCCEEEEcCCCCEEEEEEEecCccc--CCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC
Confidence 345677889999999999998654323 48899853 2 111 111110 11111222222345799999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+...
T Consensus 82 ~Dsg~YyCa~~~~ 94 (113)
T d2bnqd1 82 GDSATYLCAVRPT 94 (113)
T ss_dssp GGCEEEEEEEEES
T ss_pred CCCcEEeEeEecC
Confidence 9999999988643
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=3.2e-07 Score=54.91 Aligned_cols=72 Identities=14% Similarity=0.280 Sum_probs=51.4
Q ss_pred CeeEeeeCCC--CCceEEEEeeCcce----eeeec-ce---eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGL--LPTRVSWIRHRDIH----ILTVG-SY---TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~--p~~~v~W~~~~~~~----~~~~~-~~---~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|..++. ....+.|+|..+.. ++... .. .-...+|+++..+...+...|+|.+++.+|+|.|.|...
T Consensus 13 vtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa~YyCa~~ 92 (110)
T d1u9ka_ 13 LTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIY 92 (110)
T ss_dssp EEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCEEEEEEEe
Confidence 4689998864 56689999965322 11111 10 111137999998788889999999999999999999876
Q ss_pred CC
Q psy13371 71 TQ 72 (212)
Q Consensus 71 ~~ 72 (212)
..
T Consensus 93 ~~ 94 (110)
T d1u9ka_ 93 HP 94 (110)
T ss_dssp CT
T ss_pred CC
Confidence 53
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.51 E-value=3.6e-07 Score=55.16 Aligned_cols=79 Identities=20% Similarity=0.378 Sum_probs=50.1
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEee-----CCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYD-----SSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
.+|+.+.+.+|+.++|.|...+.......+.|++... .+... .....+.....++ ....|.|.++..+
T Consensus 5 tQ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~ 82 (114)
T d2rhea_ 5 TQPPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSG--TSASLAISGLESE 82 (114)
T ss_dssp BCCSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEET--TEEEEEESSCCGG
T ss_pred ccCCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCC--CeeeeEecccCcc
Confidence 3455788999999999999865432333489998531 11111 0111122222222 2356999999999
Q ss_pred CCEEEEEEccc
Q psy13371 161 DSGKYSCSPSN 171 (212)
Q Consensus 161 d~g~y~C~~~n 171 (212)
|++.|.|.+..
T Consensus 83 DsA~YyCA~~~ 93 (114)
T d2rhea_ 83 DEADYYCAAWN 93 (114)
T ss_dssp GCEEEEEEEEE
T ss_pred cCceEEEeecC
Confidence 99999998764
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.8e-07 Score=55.15 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=44.6
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++..+..|+.++|.|... .+...+.|++++......... ...........+.|.++...|+|.|.|...++
T Consensus 14 P~~~V~~G~~VTL~C~~~---~~~~~f~l~k~g~~~~~~~~~-----~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~ 84 (99)
T d1ucta1 14 SSPVIPLDGSVKIQCQAI---REAYLTQLMIIKNSTYREIGR-----RLKFWNETDPEFVIDHMDANKAGRYQCQYRIG 84 (99)
T ss_dssp SCSEEETTCCEEEEECCC---TTCSEEEEEEEETTEEEECSE-----ECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred CCCceeCCCeEEEEEcCC---CCCcEEEEEECCCcCceeccc-----cccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence 345688999999999864 344458888876432111110 00000001123889999999999999998765
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=6.4e-07 Score=52.22 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=45.9
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++..+..|+.++|.|... .+...+.|++++........... ..+ ....+.|.++...|+|.|.|...++
T Consensus 11 P~~~V~~G~~VTL~C~~~---~~~~~f~L~k~g~~~~~~~~~~~-----~~~--~~a~F~i~~v~~~~~G~Y~C~y~~~ 79 (95)
T d1olla1 11 PHFMVPKEKQVTICCQGN---YGAVEYQLHFEGSLFAVDRPKPP-----ERI--NKVKFYIPDMNSRMAGQYSCIYRVG 79 (95)
T ss_dssp SCSEEETTCCEEEEEECC---TTCCEEEEEETTEEEEEECCSSC-----TTC--CEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCcccCCCcEEEEEecC---CCccEEEEEECCCCcceeEEccC-----CCc--cEEEEEEeeeecCCCceEEEEeCCC
Confidence 345688999999999864 33445788888765432211110 001 1124899999999999999998765
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.50 E-value=6e-07 Score=54.63 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=49.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeee-------cceee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTV-------GSYTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~-------~~~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|...+.....+.|+|..+...+.. ..... ....|+...+ .......|+|.+++++|+|.|.|...
T Consensus 19 v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~L~i~~~~~~Dsa~YyCa~~ 97 (118)
T d2ij0c1 19 VKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINH-ASPTLSTLTVTSAHPEDSGFYVCSAL 97 (118)
T ss_dssp EEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEE-CSSSEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeec-cccccccccccccccccCceEEEEEe
Confidence 4699999888778999999764322111 11111 1236777764 45567789999999999999999875
Q ss_pred C
Q psy13371 71 T 71 (212)
Q Consensus 71 ~ 71 (212)
.
T Consensus 98 ~ 98 (118)
T d2ij0c1 98 A 98 (118)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.50 E-value=7.8e-07 Score=53.09 Aligned_cols=79 Identities=24% Similarity=0.359 Sum_probs=50.4
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEee-----CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYD-----SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|......... +.|++.. + .+... ...........++ ....|.|.+++.
T Consensus 5 tQ~P~~l~~~~G~svtL~C~~s~~~~~~--~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~l~~ 80 (108)
T d1jhll_ 5 TQSPSYLVASPGETITINCRASKSISKS--LAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG--TDFTLTISSLEP 80 (108)
T ss_dssp EEECSEEEECTTSCEEEEEEESSCCTTC--EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS--SEEEEEECSCCT
T ss_pred EccCCeEEecCCCCEEEEEEccCCcCCc--eEEEEccccCCCeEEEEeeccccCCccccccccCCC--CEEEeEeeeeEe
Confidence 3456777889999999999986543344 8999853 1 11111 1111112222222 335699999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+.+.
T Consensus 81 ~Dsa~YyCA~~~~ 93 (108)
T d1jhll_ 81 EDFAMYICQQHNE 93 (108)
T ss_dssp TCCSEEEEEECSS
T ss_pred ccceEEEEeeCCC
Confidence 9999999976654
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.50 E-value=3.9e-07 Score=54.76 Aligned_cols=79 Identities=22% Similarity=0.457 Sum_probs=48.7
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeCCC---CceeEEeecCceEEEEEEEeeeeecCCE
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDSSR---GGVSVITEKGEVTTSYLLIQQAELKDSG 163 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~g 163 (212)
+|+++.+.+|+.++|.|...... ....+.|++.. + .+...... ................|.|.+++.+|+|
T Consensus 4 QP~svsv~~G~~vtl~C~~s~~~-~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa 82 (110)
T d2esvd1 4 QPPSMDCAEGRAANLPCNHSTIS-GNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTA 82 (110)
T ss_dssp CCSEEEEETTSCEEEEEECTTCC-TTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCE
T ss_pred cCCEEEECCCCCEEEEEEEcCCC-CCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCce
Confidence 35678899999999999865322 22348999853 2 12111110 1111111222223467999999999999
Q ss_pred EEEEEccc
Q psy13371 164 KYSCSPSN 171 (212)
Q Consensus 164 ~y~C~~~n 171 (212)
.|.|.+..
T Consensus 83 ~YyCa~~~ 90 (110)
T d2esvd1 83 VYYCIVVR 90 (110)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEeC
Confidence 99998753
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.50 E-value=9.3e-07 Score=52.66 Aligned_cols=77 Identities=21% Similarity=0.377 Sum_probs=52.9
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEE-------------EeeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVI-------------SYDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.+.|.|.+++.......+.|+++ ++.+ .+.....++..+..+....+..|.|+++
T Consensus 7 sG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L 86 (117)
T d1jnhb1 7 SGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSL 86 (117)
T ss_dssp CCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeeccccc
Confidence 344567889999999999987656556889874 2221 1112223445555554445567999999
Q ss_pred eecCCEEEEEEc
Q psy13371 158 ELKDSGKYSCSP 169 (212)
Q Consensus 158 ~~~d~g~y~C~~ 169 (212)
+.+|++.|.|..
T Consensus 87 ~~eDTAvYYCAr 98 (117)
T d1jnhb1 87 TSEDSAVYSCSR 98 (117)
T ss_dssp CGGGCEEEEEEE
T ss_pred CCCcceEEEEee
Confidence 999999999964
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=98.50 E-value=3.3e-07 Score=55.83 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=49.8
Q ss_pred CeeEeeeCCCC----CceEEEEeeCcceeee------ecceeeec---CCceEEEeeCCCCeEEEEEcccCCCCCEEEEE
Q psy13371 1 MLHQRKLKGLL----PTRVSWIRHRDIHILT------VGSYTYTS---DQRFSAIHRREGDEWTLHIKWAQKRDAGVYEC 67 (212)
Q Consensus 1 ~~l~C~~~~~p----~~~v~W~~~~~~~~~~------~~~~~~~~---~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 67 (212)
|.|.|.++|.. ...+.|+|..+..-+. .+...... .+||++..+...+...|+|++++.+|++.|.|
T Consensus 18 v~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~eDtAvYyC 97 (126)
T d1etzb1 18 LSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTSDTATYHC 97 (126)
T ss_dssp EEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred EEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccccccceEEE
Confidence 46999999853 3467899865422211 11222211 36999998888888999999999999999999
Q ss_pred Eec
Q psy13371 68 QLS 70 (212)
Q Consensus 68 ~~~ 70 (212)
...
T Consensus 98 Ar~ 100 (126)
T d1etzb1 98 ARR 100 (126)
T ss_dssp EEE
T ss_pred EEe
Confidence 753
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=3.1e-07 Score=54.88 Aligned_cols=68 Identities=25% Similarity=0.420 Sum_probs=45.6
Q ss_pred eeCCCcEEEEeEEeeCCCCCceEEEEEcCeE-----EE-eeCC---------CCceeEEeecCceEEEEEEEeeeeecCC
Q psy13371 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEV-----IS-YDSS---------RGGVSVITEKGEVTTSYLLIQQAELKDS 162 (212)
Q Consensus 98 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~-----~~-~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 162 (212)
+.+|+++.|.|.. .|.....+.|++.... +. +... ..++.....++ +|.|.+++.+|+
T Consensus 11 v~~G~~V~L~c~~--~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng-----SL~I~~v~~~D~ 83 (107)
T d1l6za1 11 VAEDNNVLLLVHN--LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG-----SLLFQMITMKDM 83 (107)
T ss_dssp CCTTCCEEEEEES--CCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS-----CEEECSCCGGGC
T ss_pred ccCCCCEEEEecC--CCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc-----cEEEcCCCchhC
Confidence 5689999999974 3444556899985421 11 1111 12233444444 399999999999
Q ss_pred EEEEEEcccC
Q psy13371 163 GKYSCSPSNA 172 (212)
Q Consensus 163 g~y~C~~~n~ 172 (212)
|.|+|.+.+.
T Consensus 84 G~Y~c~v~~~ 93 (107)
T d1l6za1 84 GVYTLDMTDE 93 (107)
T ss_dssp EEEEEEEEET
T ss_pred EEEEEEEEEC
Confidence 9999999765
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=6.1e-07 Score=52.74 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=43.8
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..|+.++|.|.+.+..++.+.+.|.++|..+... .........++.. ..+.|.+ ..++.+.|+|.+.+.
T Consensus 16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~--~~~~~~~~~dgtf~~~s~l~v---~~~~~~~ytC~V~H~ 85 (99)
T d1lk2b_ 16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKV--EMSDMSFSKDWSFYILAHTEF---TPTETDTYACRVKHD 85 (99)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTC--EEEEEEECTTCCEEEEEEEEE---CCCSSCCEEEEEECT
T ss_pred cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCc--EECceeECCCCCEEEEEEeEe---cCcCCCEEEEEEEeC
Confidence 4577899999999976677789999999876211 1011122233322 1233433 445666899999987
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.48 E-value=4.9e-07 Score=54.70 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=47.7
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcce----eeee--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIH----ILTV--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~----~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..... ....+.|+|..+.. +... .........|+....+...+..+|+|.+++.+|+|.|.|....
T Consensus 18 VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 95 (114)
T d2ak4d1 18 VTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSG 95 (114)
T ss_dssp EEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCCceEeCCC
Confidence 4689987654 45678999865321 1111 1111123456666655667788999999999999999998654
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.47 E-value=3.8e-07 Score=54.40 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=47.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eeecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTVGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.....+.|+|..+... ...... ......||.... ......|+|.+++++|+|.|.|....
T Consensus 18 vtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~~ 91 (106)
T d1lk3l1 18 LTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEADDTAIYFCQQSW 91 (106)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeec--CCCEEEeEECCcChhhCCCccccccc
Confidence 4699999887777899998764221 111111 111246887763 45678999999999999999997654
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.47 E-value=9.4e-07 Score=53.04 Aligned_cols=79 Identities=16% Similarity=0.364 Sum_probs=49.2
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE---EEeeCCC---------CceeEEeecCceEEEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV---ISYDSSR---------GGVSVITEKGEVTTSYLLI 154 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~---~~~~~~~---------~~~~~~~~~~~~~~~~l~i 154 (212)
+.+.|....+.+|+.++|.|..... .. .+.|++.. +. +...... .......... ....|.|
T Consensus 4 V~Q~P~~~~~~~G~~vtl~C~~s~~-~~--~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I 78 (110)
T d2aq2a1 4 VTQSPRNKVAVTGEKVTLSCQQTNN-HN--NMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQ--EQFSLIL 78 (110)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSC-CS--EEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEET--TEEEEEE
T ss_pred EEEeCCeEEEcCCCCEEEEEEECCC-cC--cEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccC--CEEEEEE
Confidence 3455777889999999999987533 23 48999853 21 1111111 1111111111 2356999
Q ss_pred eeeeecCCEEEEEEcccC
Q psy13371 155 QQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 155 ~~~~~~d~g~y~C~~~n~ 172 (212)
.++..+|+|.|.|.+...
T Consensus 79 ~~~~~~Dsa~YyCa~~~~ 96 (110)
T d2aq2a1 79 ESATPSQTSVYFCASGGG 96 (110)
T ss_dssp SSCCGGGCEEEEEEEEET
T ss_pred CCCCHhhCEEEEEeeCCC
Confidence 999999999999987643
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=6.2e-07 Score=54.21 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=51.3
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EE--EeeCC---------CCceeEEeecCceEEEEE
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VI--SYDSS---------RGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~--~~~~~---------~~~~~~~~~~~~~~~~~l 152 (212)
+.+.|.+..+.+|+.++|.|...... ....+.|++... .+ ..... ...+......+. ...|
T Consensus 3 ~~~sP~~~t~~~G~~vtL~C~~~~~~-~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~--~~~L 79 (114)
T d1akjd_ 3 FRVSPLDRTWNLGETVELKCQVLLSN-PTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGD--TFVL 79 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCSS-CCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETT--EEEE
T ss_pred eeECCCcEeccCCCcEEEEEEeCCCc-CCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCC--Chhc
Confidence 34567778899999999999986442 222489998531 11 11111 111222222222 3569
Q ss_pred EEeeeeecCCEEEEEEcccC
Q psy13371 153 LIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|++++.+|+|.|.|.+...
T Consensus 80 ~I~~l~~~Dsg~YyCa~~~~ 99 (114)
T d1akjd_ 80 TLSDFRRENEGYYFCSALSN 99 (114)
T ss_dssp EESSCCGGGCEEEEEEEEET
T ss_pred EEccCCCCCCEEEeEeEcCC
Confidence 99999999999999987643
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.47 E-value=2.1e-07 Score=55.58 Aligned_cols=70 Identities=23% Similarity=0.334 Sum_probs=48.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeee---cceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTV---GSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~---~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|..++.....+.|+|..+...... ..... ....||... .......|+|.+++++|+|.|.|.....
T Consensus 19 vtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~--~~~~~~~L~I~~~~~~Dsa~YyCa~~~~ 93 (107)
T d1ospl1 19 VTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGS--DSGKDYTLSITSLQTEDVATYFCQQYWS 93 (107)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--CSSSSEEEEESSCCGGGCSEEEEEECSS
T ss_pred EEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCcccccccee--cCCCeEEeEEcccccccCCcEEEeeccC
Confidence 4689999887767899999764322211 11111 123688876 3556789999999999999999987653
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.47 E-value=9.9e-07 Score=52.81 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=49.4
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCC-CCceEEEEEcC--eEE---EeeC-----CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYHHD--EVI---SYDS-----SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~-p~~~v~W~~~~--~~~---~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+|+.+.+.+|+.++|.|...+... ....+.|++.. +.. .... ....+......+ ....|.|++++.+
T Consensus 6 Q~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~--~~~~L~I~~~~~~ 83 (110)
T d1oaql_ 6 QESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG--NKAALTITGAQTE 83 (110)
T ss_dssp ECSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEET--TEEEEEEESCCGG
T ss_pred eCCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccc--cceeeecCCCCcc
Confidence 355678999999999999864322 22237899742 221 1111 111222222222 2367999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+...
T Consensus 84 Dsa~YyCa~~~~ 95 (110)
T d1oaql_ 84 DEAIYFCALWYS 95 (110)
T ss_dssp GCEEEEEEEEET
T ss_pred ccEeEEEEcccC
Confidence 999999987643
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.47 E-value=4.8e-07 Score=54.44 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=47.6
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE---EEe-e--------CCCCceeEEeecCceEEEEEEEee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV---ISY-D--------SSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~---~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
+.|....+.+|+.++|.|...+. ...+.|++.. +. +.. . .....+......+ ...+.|.|++
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~L~i~~ 79 (111)
T d2esve1 4 QFPSHSVIEKGQTVTLRCDPISG---HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTG-GTYSTLKVQP 79 (111)
T ss_dssp EECSEEEEETTCCEEEEEECCTT---CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTT-SSSEEEEESS
T ss_pred ECCCEEEECCCCCEEEEEEECCC---CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCC-CCEEEEEECC
Confidence 44667789999999999985432 2358999853 21 111 0 0011122222211 1234699999
Q ss_pred eeecCCEEEEEEccc
Q psy13371 157 AELKDSGKYSCSPSN 171 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n 171 (212)
+..+|+|.|.|.+..
T Consensus 80 ~~~~Dsa~YyCa~~~ 94 (111)
T d2esve1 80 AELEDSGVYFCASSQ 94 (111)
T ss_dssp CCGGGCEEEEEEEES
T ss_pred cccCCCceEEEeeeC
Confidence 999999999997653
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=4.3e-07 Score=53.46 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=46.0
Q ss_pred eeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 98 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...|+..+|.|.+.+..++.+.+.|.++|..+.... ........++.. ..+.|.+ ..++.+.|+|.+.+.
T Consensus 16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~--~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~ 86 (100)
T d1k5nb_ 16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVE--HSDLSFSKDWSFYLLYYTEF---TPTEKDEYACRVNHV 86 (100)
T ss_dssp CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCE--ECCCEECTTSCEEEEEEEEE---CCCSSCCEEEEEECT
T ss_pred ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCcc--ccceecCCCCcEEEEEEeEE---CCCCCCEEEEEEEeC
Confidence 356888899999999877788899999998773111 111233334432 1233433 445667999999987
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.46 E-value=5.3e-07 Score=54.89 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=50.3
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEE---Eee-C---------CCCceeEEeecCceEEEEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVI---SYD-S---------SRGGVSVITEKGEVTTSYLLI 154 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~---~~~-~---------~~~~~~~~~~~~~~~~~~l~i 154 (212)
.+.|....+.+|+.++|.|...+.... .+.|++.. +.+ ... . ....+...... ......|.|
T Consensus 5 ~Q~P~~~~~~~G~~v~L~C~~~~~~~~--~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~L~i 81 (118)
T d2ij0c1 5 SQHPSMVIVKSGTSVKIECRSLDTNIH--TMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHA-SPTLSTLTV 81 (118)
T ss_dssp EEECSEEEECTTCCEEEEEEECSSCCS--EEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEEC-SSSEEEEEE
T ss_pred EEcCCeEEEcCCCCEEEEEEEcCCccc--EEEEEEEcccccceeeeeccccccceeccccccccceeecc-ccccccccc
Confidence 445666789999999999987654333 48999853 211 110 0 01122222222 223456999
Q ss_pred eeeeecCCEEEEEEccc
Q psy13371 155 QQAELKDSGKYSCSPSN 171 (212)
Q Consensus 155 ~~~~~~d~g~y~C~~~n 171 (212)
.++..+|+|.|.|.+..
T Consensus 82 ~~~~~~Dsa~YyCa~~~ 98 (118)
T d2ij0c1 82 TSAHPEDSGFYVCSALA 98 (118)
T ss_dssp CSCCGGGCEEEEEEEEC
T ss_pred cccccccCceEEEEEec
Confidence 99999999999998753
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.46 E-value=5.2e-07 Score=54.21 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=45.6
Q ss_pred CeeEeeeCCC-CCceEEEEeeCccee----eeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHI----LTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~----~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++. ....+.|+|...... ...... .....+.............|+|.+++.+|+|.|.|.+..
T Consensus 16 vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 90 (110)
T d2esvd1 16 ANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKN-NETNEMASLIITEDRKSSTLILPHATLRDTAVYYCIVVR 90 (110)
T ss_dssp EEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSS-CEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeece-ecccccceeeecccCCeeeehhcccccCCceEEEEEEeC
Confidence 4689998765 456799999654221 111110 111234444444566788999999999999999998653
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.46 E-value=1.7e-06 Score=52.01 Aligned_cols=80 Identities=28% Similarity=0.348 Sum_probs=50.8
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeCCCC-----ceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDSSRG-----GVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|+.+.+.+|+.++|.|........ .+.|++.. + .+....... .+.....+.......|.|.++..
T Consensus 4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~--~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 81 (111)
T d1bd2d1 4 KQNSPSLSVQEGRISILNCDYTNSMFD--YFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP 81 (111)
T ss_dssp ECCCSEEEEETTSCEEEEEEECCTTCC--EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred EccCCEEEEcCCCCEEEEEEeCCCCCC--eEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc
Confidence 445677789999999999987654333 48899853 1 111111111 11222222222356799999999
Q ss_pred cCCEEEEEEccc
Q psy13371 160 KDSGKYSCSPSN 171 (212)
Q Consensus 160 ~d~g~y~C~~~n 171 (212)
+|+|.|.|.+..
T Consensus 82 ~Dsa~YyCa~~~ 93 (111)
T d1bd2d1 82 GDSAVYFCAAME 93 (111)
T ss_dssp GGCEEEEEEEES
T ss_pred cccEEEEeeccC
Confidence 999999998764
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.45 E-value=1.4e-07 Score=57.32 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=48.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeeec--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTVG--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|..+......+.|+|..+.. ++... .......+|+............|+|.+++.+|+|.|.|.+...
T Consensus 18 vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~ 95 (115)
T d1j8hd1 18 VLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYFCAVSES 95 (115)
T ss_dssp EEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEEEEEESS
T ss_pred EEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccceeeecCC
Confidence 468999988777789999966422 11111 1111223566665434455678999999999999999988653
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.45 E-value=9.3e-07 Score=52.78 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=52.4
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE----ee---------CCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS----YD---------SSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~----~~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.++|.|.+.+.......+.|+++ ++.++ .. ....++..+..+.......|.|+++
T Consensus 6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL 85 (117)
T d1um5h1 6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSL 85 (117)
T ss_dssp CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccccc
Confidence 345678899999999999876555556899886 22221 11 1112344444444344557999999
Q ss_pred eecCCEEEEEEcc
Q psy13371 158 ELKDSGKYSCSPS 170 (212)
Q Consensus 158 ~~~d~g~y~C~~~ 170 (212)
+.+|++.|.|...
T Consensus 86 ~~eDtAvYYCAr~ 98 (117)
T d1um5h1 86 TSEDSAVYYCARS 98 (117)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCcceEEEEeec
Confidence 9999999999653
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.45 E-value=2.8e-07 Score=56.28 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=49.6
Q ss_pred CeeEeeeCCCC--CceEEEEeeCccee---eeecceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHI---LTVGSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~---~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+++.. ...+.|+|...... +-...... ...+|++...+...+...|+|.+++++|+|.|.|....
T Consensus 19 vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~ 96 (120)
T d1hxma1 19 ATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT 96 (120)
T ss_dssp EEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCceeecCccc
Confidence 46999998754 56799998643211 11111111 12368988877667789999999999999999998654
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.45 E-value=5.2e-07 Score=54.65 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=51.7
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeCCC-----CceeEEeecCceEEEEEEEeeee
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDSSR-----GGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
+.+.+..+.+.+|+.++|.|.......+. +.|++.. + .+...... ..+.....+.......|.|.+++
T Consensus 4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~--i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1lp9e1 4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPF--LFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQ 81 (115)
T ss_dssp EEECCSEEEEETTSCEEECEEEECSSSCC--EEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCC
T ss_pred EEcCCCeEEECCCCCEEEEEEEeCCCcCC--eeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccc
Confidence 34556777899999999999987654454 8999853 2 11111110 11122221222123459999999
Q ss_pred ecCCEEEEEEcccC
Q psy13371 159 LKDSGKYSCSPSNA 172 (212)
Q Consensus 159 ~~d~g~y~C~~~n~ 172 (212)
.+|+|.|.|.+...
T Consensus 82 ~~Dsg~YyCa~~~~ 95 (115)
T d1lp9e1 82 LSDSALYYCALFLA 95 (115)
T ss_dssp GGGCEEEEEEEEEC
T ss_pred cccCccceEEEEcC
Confidence 99999999987543
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=7.9e-08 Score=57.95 Aligned_cols=25 Identities=36% Similarity=0.834 Sum_probs=22.3
Q ss_pred CCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 47 GDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 47 ~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
.++.+|+|.+++.+|+|.|.|.+..
T Consensus 66 ~~~~sL~I~~v~~~D~G~Y~C~V~~ 90 (110)
T d1ncna_ 66 SDSWTLRLHNLQIKDKGLYQCIIHH 90 (110)
T ss_dssp TTTTEEEECSCCGGGCEEEEEEEEE
T ss_pred CCeEEEEECCCChhHCEEEEEEEEe
Confidence 4567999999999999999999875
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.45 E-value=3.6e-07 Score=54.51 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=47.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----e-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----V-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.....+.|+|........ . .........|+.... ..++..|.|.+++.+|+|.|.|....
T Consensus 19 vtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~Dsa~YyCa~~~ 92 (107)
T d1c5cl1 19 VSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR--SGSDYSLTISSLESEDFADYYCLQYA 92 (107)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred EEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc--cCCEEEEEEhhhcccCCeEEEEecCc
Confidence 469999988877789999866422211 1 111112235666653 44678999999999999999997654
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.45 E-value=7.9e-07 Score=52.93 Aligned_cols=77 Identities=19% Similarity=0.382 Sum_probs=52.4
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEE-------------EeeCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVI-------------SYDSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
....+++|+.+.|.|.+.+.......+.|.++- +.+ .+..+..++..+..+....+..|.+++++
T Consensus 8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~ 87 (117)
T d1jpth1 8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR 87 (117)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence 345688899999999999865445568888752 222 11122234455555444455679999999
Q ss_pred ecCCEEEEEEcc
Q psy13371 159 LKDSGKYSCSPS 170 (212)
Q Consensus 159 ~~d~g~y~C~~~ 170 (212)
.+|++.|.|...
T Consensus 88 ~eDTAvYYCAr~ 99 (117)
T d1jpth1 88 AEDTAVYYCARD 99 (117)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCCceEEEEeec
Confidence 999999999654
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.45 E-value=1.2e-06 Score=52.34 Aligned_cols=79 Identities=15% Similarity=0.309 Sum_probs=51.5
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEe----e---------CCCCceeEEeecCceEEEEEEEe
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISY----D---------SSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~----~---------~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.++....+.+|+.++|.|.+.+.......+.|.++ ++.++. . .....+.....+.......|.|+
T Consensus 5 ~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~ 84 (117)
T d1mfah1 5 QQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELS 84 (117)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred EeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeec
Confidence 34445678899999999999876544456788875 332211 1 11122333444433344569999
Q ss_pred eeeecCCEEEEEEc
Q psy13371 156 QAELKDSGKYSCSP 169 (212)
Q Consensus 156 ~~~~~d~g~y~C~~ 169 (212)
+++.+|++.|.|..
T Consensus 85 ~L~~eDtAvYYCAr 98 (117)
T d1mfah1 85 SLTSEDSAVYYCTR 98 (117)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred ccCCCcceEEEEec
Confidence 99999999999964
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.45 E-value=2.8e-07 Score=55.54 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=50.1
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeee----c-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTV----G-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~----~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.. ...+.|+|..+...... . .......+|+....+...+...|+|.+++.+|+|.|.|....
T Consensus 18 vtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~ 95 (111)
T d1cd0a_ 18 VTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYD 95 (111)
T ss_dssp EEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcEEEEeecc
Confidence 46899998754 45699999764322111 0 111112478888877777899999999999999999997654
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.44 E-value=6.5e-07 Score=54.55 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=49.8
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeCC---------CCceeEEeecCceEEEEEEEee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDSS---------RGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~~---------~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
+.+..+...+|+.++|.|...+.......+.|++.. + .+..... ...+.....+.......|.|.+
T Consensus 6 Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~ 85 (120)
T d1ypzf1 6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS 85 (120)
T ss_dssp CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred cCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccc
Confidence 344567788999999999875432122238999853 1 1211111 1122233333333345699999
Q ss_pred eeecCCEEEEEEccc
Q psy13371 157 AELKDSGKYSCSPSN 171 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n 171 (212)
++.+|+|.|.|....
T Consensus 86 l~~~Dsa~YyCA~~~ 100 (120)
T d1ypzf1 86 LEEEDEAIYYCSYGE 100 (120)
T ss_dssp CCGGGCSEEEEEECC
T ss_pred cccccceeEEEEEcC
Confidence 999999999997753
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=6.8e-07 Score=51.89 Aligned_cols=70 Identities=11% Similarity=0.161 Sum_probs=44.7
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceE-EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++.++|.|.+.++.++.+.+.|.++|+.+..............++... .+.|. +...+...|+|.+.+.
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~---v~~~~~~~ytC~V~H~ 84 (94)
T d1de4a1 14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLA---VPPGEEQRYTCQVEHP 84 (94)
T ss_dssp CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEE---ECTTCGGGEEEEEECT
T ss_pred CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEE---ECCCCCCEEEEEEEeC
Confidence 4567899999999766777899999998874332222222223333222 22333 3445556899999987
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=98.44 E-value=2.3e-07 Score=54.59 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=45.6
Q ss_pred eeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceE-EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 98 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
+..|+..+|.|.+.+..++.+.+.|.++|..+...... .......++.+. .+.|.+ ..++.+.|+|.+.+.
T Consensus 14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~-t~~~~~~dgtf~~~s~l~v---~~~~~~~ytC~V~H~ 85 (100)
T d1muja1 14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYE-TSFFVNRDYSFHKLSYLTF---IPSDDDIYDCKVEHW 85 (100)
T ss_dssp CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEE-CCCEECTTSCEEEEEEEEE---CCCTTCCEEEEEECT
T ss_pred cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCcee-eeeEECCCCCEEEEEEeEE---cCCCCCEEEEEEEEC
Confidence 45578889999999987778899999999776321100 111223333332 333444 345666899999987
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.44 E-value=3e-07 Score=54.60 Aligned_cols=76 Identities=24% Similarity=0.418 Sum_probs=47.9
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe--EE--Ee-eC-----CCCceeEEeecCceEEEEEEEeeeeecC
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE--VI--SY-DS-----SRGGVSVITEKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~--~~--~~-~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d 161 (212)
+|+.+.+.+|+.++|.|......... +.|++... .. .. .. ....+.....+. ....|.|.+++.+|
T Consensus 4 Qp~sl~~~~G~svtl~C~~~~~~~~~--~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~~~D 79 (103)
T d8faba1 4 QPPSVSVSPGQTARITCSANALPNQY--AYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSG--TTVTLTISGVQAED 79 (103)
T ss_dssp CCSEEEECTTSCEEEEEECTTGGGSC--CEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET--TEEEEEETTCCGGG
T ss_pred CCCeEEECCCCCEEEEEEeCCCCCCC--EEEEEccCCCceEEEeeeecccccccCCcEEECCCC--CccCceEcCcchhH
Confidence 45678899999999999875433334 89998632 11 11 10 011112222222 23569999999999
Q ss_pred CEEEEEEccc
Q psy13371 162 SGKYSCSPSN 171 (212)
Q Consensus 162 ~g~y~C~~~n 171 (212)
+|.|.|.+..
T Consensus 80 sa~YyCA~~~ 89 (103)
T d8faba1 80 EADYYCQAWD 89 (103)
T ss_dssp CEEEEEEEEE
T ss_pred CceEEeeecC
Confidence 9999997654
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.44 E-value=4.1e-07 Score=54.23 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=47.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee---ecce--eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT---VGSY--TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.........+.|+|..+..... .... .....+|+... ......+|+|.+++++|+|.|.|....
T Consensus 18 vtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~L~I~~~~~~DsA~YyCa~~~ 91 (106)
T d1a0ql1 18 VTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGS--GSGRDYSFSISNLEPEDIATYYCLQYY 91 (106)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE--EETTEEEEEECSCCGGGCSEEEEEECS
T ss_pred EEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEee--cCCCEeeeEehhhcccCCEeEEEEEeC
Confidence 469999887777789999975422211 1111 11123577776 345678999999999999999998764
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.43 E-value=9.2e-07 Score=52.63 Aligned_cols=75 Identities=19% Similarity=0.340 Sum_probs=51.7
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEE------------EeeCCCCceeEEeecCceEEEEEEEeeeeecC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVI------------SYDSSRGGVSVITEKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 161 (212)
..+.+|+.++|.|.+.+.......+.|+++ |+.+ .+.....++..+..+.......|.|+++..+|
T Consensus 10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD 89 (117)
T d1c5db1 10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED 89 (117)
T ss_dssp SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence 467899999999999876555556889885 2222 11122233454554444455679999999999
Q ss_pred CEEEEEEcc
Q psy13371 162 SGKYSCSPS 170 (212)
Q Consensus 162 ~g~y~C~~~ 170 (212)
++.|.|...
T Consensus 90 tAvYYCAr~ 98 (117)
T d1c5db1 90 TAIYFCTRE 98 (117)
T ss_dssp CEEEEEEEC
T ss_pred ceEEEEecc
Confidence 999999654
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=1.5e-07 Score=57.30 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=47.1
Q ss_pred CeeEeeeCCC------CCceEEEEeeCcceeee---ecce---eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEE
Q psy13371 1 MLHQRKLKGL------LPTRVSWIRHRDIHILT---VGSY---TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQ 68 (212)
Q Consensus 1 ~~l~C~~~~~------p~~~v~W~~~~~~~~~~---~~~~---~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 68 (212)
+.|+|.+... ....+.|++........ .... .....+|+.+..+...++.+|+|.+++.+|+|.|.|.
T Consensus 18 V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 97 (118)
T d1qfoa_ 18 LLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFR 97 (118)
T ss_dssp EEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCChhHCEEEEEE
Confidence 4789998632 12356787754321111 1111 1122478888766667889999999999999999999
Q ss_pred ecCC
Q psy13371 69 LSTQ 72 (212)
Q Consensus 69 ~~~~ 72 (212)
+...
T Consensus 98 v~~~ 101 (118)
T d1qfoa_ 98 FEIS 101 (118)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8764
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.5e-07 Score=57.85 Aligned_cols=77 Identities=26% Similarity=0.425 Sum_probs=46.1
Q ss_pred eeeeCCCcEEEEeEEeeCCCC--CceEEEEEcCeE--------EEee---------CCCCceeEEe-ecCceEEEEEEEe
Q psy13371 96 LHVDEGSTINLTCSIKYSPEP--PAYIFWYHHDEV--------ISYD---------SSRGGVSVIT-EKGEVTTSYLLIQ 155 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p--~~~v~W~~~~~~--------~~~~---------~~~~~~~~~~-~~~~~~~~~l~i~ 155 (212)
..+.+|++++|.|.....+.+ ...+.|++.... +... ....++.... .........|.|.
T Consensus 14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~ 93 (124)
T d1eaja_ 14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT 93 (124)
T ss_dssp EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence 567899999999998654332 235789864210 1000 0001122211 1111112359999
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
+++.+|+|.|.|.+.+.
T Consensus 94 ~v~~~D~G~Y~C~v~~~ 110 (124)
T d1eaja_ 94 NLQLSDIGTYQCKVKKA 110 (124)
T ss_dssp SCCGGGCEEEEEEEEET
T ss_pred ccEEccCEEEEEEEEEC
Confidence 99999999999999876
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.43 E-value=9.6e-07 Score=53.18 Aligned_cols=77 Identities=22% Similarity=0.374 Sum_probs=48.0
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEe-e--------CCCCceeEEeecCceEEEEEEEee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISY-D--------SSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
+.|....+.+|+.++|.|...+. ...+.|+++. + .+.. . .....+..... .....+.|.|++
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~~~---~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~ 79 (112)
T d1kgce1 4 QSPRYKVAKRGQDVALRCDPISG---HVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAER-PEGSVSTLKIQR 79 (112)
T ss_dssp EECSEEEEETTCCEEEEEECCTT---CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC-TTSSCEEEEESS
T ss_pred ECCCeEEECCCCCEEEEEEECCC---CCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeEC-CcCCEEEEEECC
Confidence 45667788999999999986432 2348999852 1 1111 0 01111222221 222335699999
Q ss_pred eeecCCEEEEEEccc
Q psy13371 157 AELKDSGKYSCSPSN 171 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n 171 (212)
+..+|+|.|.|.+..
T Consensus 80 ~~~~Dsa~YyCa~~~ 94 (112)
T d1kgce1 80 TQQEDSAVYLCASSL 94 (112)
T ss_dssp CCGGGCEEEEEEEES
T ss_pred CCcCCCEEEEEeeeC
Confidence 999999999998753
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.43 E-value=1.3e-06 Score=52.75 Aligned_cols=77 Identities=17% Similarity=0.336 Sum_probs=52.4
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE-------------eeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.+.|.|.+.+.......+.|.++ ++.++ +.....++..+..+.......|.|+++
T Consensus 6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L 85 (126)
T d1lmka1 6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSL 85 (126)
T ss_dssp CCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeeccc
Confidence 344578899999999999987656656889875 22221 111112344444444445567999999
Q ss_pred eecCCEEEEEEc
Q psy13371 158 ELKDSGKYSCSP 169 (212)
Q Consensus 158 ~~~d~g~y~C~~ 169 (212)
+.+|++.|.|..
T Consensus 86 ~~eDTAvYYCAr 97 (126)
T d1lmka1 86 TSEDSAVYYCAR 97 (126)
T ss_dssp CGGGCEEEEEEE
T ss_pred CCCcceEEEEee
Confidence 999999999964
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.42 E-value=9.5e-07 Score=52.44 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=52.2
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE-------------eeCCCCceeEEeecCceEEEEEEEe
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
..+....+.+|+.+.|.|.+.+..-....+.|.++ |+.++ +.....++..+..+.......|.|+
T Consensus 5 ~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~ 84 (116)
T d1mjuh1 5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS 84 (116)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred eeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccc
Confidence 34455678899999999999986555555789874 22221 1111122344444444445579999
Q ss_pred eeeecCCEEEEEEc
Q psy13371 156 QAELKDSGKYSCSP 169 (212)
Q Consensus 156 ~~~~~d~g~y~C~~ 169 (212)
+++.+|++.|.|..
T Consensus 85 sL~~eDtAvYYCAr 98 (116)
T d1mjuh1 85 SLTSDDSAVYYCAN 98 (116)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred ccCCCCceEEEEcc
Confidence 99999999999964
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=98.42 E-value=8.3e-07 Score=54.00 Aligned_cols=76 Identities=18% Similarity=0.355 Sum_probs=50.2
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE---E---E------------eeCCCCceeEEeecCceEEEEEEE
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV---I---S------------YDSSRGGVSVITEKGEVTTSYLLI 154 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~---~---~------------~~~~~~~~~~~~~~~~~~~~~l~i 154 (212)
...+.+|+.++|.|.+.+.......+.|+++. +. + . +.....++..+..+.......|.|
T Consensus 9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i 88 (127)
T d1i3ua_ 9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQM 88 (127)
T ss_dssp CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEE
T ss_pred CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEee
Confidence 34678899999999998765444568899852 11 1 0 011112344444444344567999
Q ss_pred eeeeecCCEEEEEEcc
Q psy13371 155 QQAELKDSGKYSCSPS 170 (212)
Q Consensus 155 ~~~~~~d~g~y~C~~~ 170 (212)
++++.+|++.|.|...
T Consensus 89 ~~l~~eDtAvYYCAr~ 104 (127)
T d1i3ua_ 89 NSLKPEDTAVYYCAAK 104 (127)
T ss_dssp CSCCGGGCEEEEEEEE
T ss_pred ecccccceeEEEEEEE
Confidence 9999999999999754
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.42 E-value=5.3e-07 Score=53.88 Aligned_cols=69 Identities=23% Similarity=0.232 Sum_probs=47.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----ecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----VGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.....+.|+|........ .... ......|+.... ......|+|.+++.+|+|.|.|....
T Consensus 19 vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~DSa~YyCa~~~ 92 (107)
T d1kcvl1 19 VTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG--SATDFTLTISSVQADDDADYYCGQSY 92 (107)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec--cCCeeecEEHhheecCCceEEEEecC
Confidence 468999988777789999865422111 1111 111246777653 45678999999999999999998664
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.42 E-value=7.3e-07 Score=53.99 Aligned_cols=80 Identities=25% Similarity=0.397 Sum_probs=48.5
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeCCCCce------eEEeecCceEEEEEEEeeeee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDSSRGGV------SVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~~~~~~------~~~~~~~~~~~~~l~i~~~~~ 159 (212)
+.+..+.+.+|+.++|.|.......+ .+.|++.. + .+......... .............|.|++++.
T Consensus 5 Q~~~~v~v~~G~svtl~C~~~~~~~~--~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1i9ea_ 5 QPDARVTVSEGASLQLRCKYSYSATP--YLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW 82 (115)
T ss_dssp CCCSEEEEETTSCEEECCEEECSSCC--EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred cCCCeEEECCCCCEEEEEEEcCCCCC--CEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence 44556789999999999998654333 47899742 1 12111111111 111111111224599999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+...
T Consensus 83 ~Dsg~YyCa~~~~ 95 (115)
T d1i9ea_ 83 SDSAVYFCAVSGF 95 (115)
T ss_dssp GGCEEEEEEEEET
T ss_pred cccceecccccCC
Confidence 9999999987643
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.42 E-value=1.1e-06 Score=52.42 Aligned_cols=79 Identities=11% Similarity=0.303 Sum_probs=52.3
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEe-------------eCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISY-------------DSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
....+.+|+.+.|.|.+.+.......+.|+++ |+.++. .....++..+..+.......|.|++++
T Consensus 8 g~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~ 87 (117)
T d1iqdb1 8 GAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLR 87 (117)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccC
Confidence 34568889999999999876444445889885 222210 111223444444444445579999999
Q ss_pred ecCCEEEEEEcccC
Q psy13371 159 LKDSGKYSCSPSNA 172 (212)
Q Consensus 159 ~~d~g~y~C~~~n~ 172 (212)
.+|++.|.|.....
T Consensus 88 ~eDtAvYYCA~~~~ 101 (117)
T d1iqdb1 88 SDDTAVYYCAVPDP 101 (117)
T ss_dssp GGGCEEEEEEECSS
T ss_pred cCcceEEEEeEcCC
Confidence 99999999986543
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.42 E-value=4.2e-07 Score=54.26 Aligned_cols=69 Identities=25% Similarity=0.333 Sum_probs=47.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee---e-cce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT---V-GSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~---~-~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.........+.|+|........ . ... ......||.... ..++..|+|.+++++|+|.|.|....
T Consensus 19 vtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~--~~~~~~L~I~~~~~~DsA~YyCa~~~ 92 (107)
T d1mexl1 19 VSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSG--SGTDFTLTINNVQSEDLAEYFCQQYN 92 (107)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred EEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecC--CCCeeeeeechhheecceeEEEeECC
Confidence 468999877666789999876422211 1 111 111246888764 35678999999999999999998654
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.41 E-value=5.4e-07 Score=53.94 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=47.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+.....+.|+|..+... ..... ..-....||.... ......|+|.+++++|+|.|.|....
T Consensus 19 vtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~~DSa~YyCA~~~ 92 (109)
T d1mqkl_ 19 VTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG--SGTQFSLKINSLLPEDFGSYYCQHHY 92 (109)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec--cCCEEEEEEccccccCCeeEEEeeeC
Confidence 4699999877777899999664221 11111 1111236777763 45678999999999999999998664
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=4.6e-07 Score=55.44 Aligned_cols=82 Identities=18% Similarity=0.382 Sum_probs=48.7
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCC-----CCceEEEEEcCeEE------EeeC-------CCCceeEEeecCceEEEEE
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPE-----PPAYIFWYHHDEVI------SYDS-------SRGGVSVITEKGEVTTSYL 152 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~-----p~~~v~W~~~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~l 152 (212)
..+.++.+.+|+.++|.|....... ....+.|++....- .... ...++.....+......+|
T Consensus 6 ~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 85 (121)
T d2g5ra1 6 TMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTL 85 (121)
T ss_dssp ECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCE
T ss_pred EeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEE
Confidence 3456788999999999998752111 22356788764321 1110 0111222222211123459
Q ss_pred EEeeeeecCCEEEEEEcccC
Q psy13371 153 LIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 153 ~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|.+++.+|+|.|.|.+...
T Consensus 86 ~I~~v~~~DsG~Y~C~v~~~ 105 (121)
T d2g5ra1 86 SIRDARMSDAGRYFFRMEKG 105 (121)
T ss_dssp EECSCCGGGCEEEEEEEEET
T ss_pred EECCCChHHCEEEEEEEEeC
Confidence 99999999999999998654
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.41 E-value=5.1e-07 Score=55.05 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=49.4
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcce----eeee---cceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIH----ILTV---GSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~----~~~~---~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|.+.+.. ...+.|+|..+.. +... +.... ...+|+.+..+...+...|+|.+++.+|+|.|.|..
T Consensus 19 vtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Dsa~YyCA~ 98 (120)
T d1ypzf1 19 AQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSY 98 (120)
T ss_dssp EEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEE
T ss_pred EEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccccceeEEEEE
Confidence 36899987653 4679999976422 1111 11111 123688888766778899999999999999999987
Q ss_pred cC
Q psy13371 70 ST 71 (212)
Q Consensus 70 ~~ 71 (212)
..
T Consensus 99 ~~ 100 (120)
T d1ypzf1 99 GE 100 (120)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.41 E-value=6.1e-07 Score=53.79 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=47.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----ecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----VGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+.....+.|+|........ ... .......|+.... ......|+|.+++++|+|.|.|....
T Consensus 21 vtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~l~~~Dsa~YyCA~~~ 94 (109)
T d1bwwa_ 21 VTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSG--SGTDYTFTISSLQPEDIATYYCQQYQ 94 (109)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeC--CCCEeEEEEeeceeCcCceEEEeecC
Confidence 368999988777789999966422211 111 1111246887763 45678899999999999999998664
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.41 E-value=1.5e-06 Score=52.09 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=52.7
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE-------------eeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.+.|.|.+.+.......+.|+++- +.++ +.....++..+..+.......|.|+++
T Consensus 7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL 86 (119)
T d1rz7h1 7 SGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSL 86 (119)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeecc
Confidence 3445678899999999999865454458898752 2221 112223345555544445567999999
Q ss_pred eecCCEEEEEEcc
Q psy13371 158 ELKDSGKYSCSPS 170 (212)
Q Consensus 158 ~~~d~g~y~C~~~ 170 (212)
+.+|++.|.|...
T Consensus 87 ~~eDTAvYYCAr~ 99 (119)
T d1rz7h1 87 RSEDTAVYYCAAD 99 (119)
T ss_dssp CGGGCEEEEEEEC
T ss_pred CcccceEEEEeec
Confidence 9999999999654
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=98.40 E-value=9.5e-07 Score=52.65 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=51.2
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEe------------eCCCCceeEEeecCceEEEEEEEeeeeecC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISY------------DSSRGGVSVITEKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 161 (212)
..+.+|+.++|.|.+.+.......+.|+++ ++.++. .....++..+..+.......|.|++++.+|
T Consensus 10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD 89 (116)
T d7fabh1 10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD 89 (116)
T ss_dssp SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence 467889999999999987666667899985 222211 111122333444443345679999999999
Q ss_pred CEEEEEEccc
Q psy13371 162 SGKYSCSPSN 171 (212)
Q Consensus 162 ~g~y~C~~~n 171 (212)
++.|.|....
T Consensus 90 tAvYyCAr~~ 99 (116)
T d7fabh1 90 TAVYYCARNL 99 (116)
T ss_dssp CEEEEEEEEC
T ss_pred ceEEEeeeec
Confidence 9999997543
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=98.40 E-value=1.3e-06 Score=52.37 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=50.9
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE------------eeCCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS------------YDSSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
...+.+|+.+.|.|.+.+.......+.|+++. +.++ +.....++..+..+.......|.|++++.+
T Consensus 9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e 88 (120)
T d1dn0b1 9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA 88 (120)
T ss_dssp CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence 34688899999999998865554458899862 2221 112223344454444444556999999999
Q ss_pred CCEEEEEEc
Q psy13371 161 DSGKYSCSP 169 (212)
Q Consensus 161 d~g~y~C~~ 169 (212)
|++.|.|..
T Consensus 89 DtA~YYCAr 97 (120)
T d1dn0b1 89 DTAVYYCAR 97 (120)
T ss_dssp GCEEEEEEE
T ss_pred cccEEEEEe
Confidence 999999953
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.3e-07 Score=56.40 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=43.3
Q ss_pred CeeEeeeCCCCC----ceEEEEeeCcceeeeecceeee---cCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLP----TRVSWIRHRDIHILTVGSYTYT---SDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~----~~v~W~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|+|.++.... ..+.|.+++............. ..+|.... ..++.+|+|.+++.+|+|.|.|.+.+
T Consensus 12 a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~---~~g~~sL~I~~v~~~D~G~Y~C~V~~ 86 (105)
T d1dr9a1 12 ATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD---ITNNLSIVILALRPSDEGTYECVVLK 86 (105)
T ss_dssp EEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE---STTTTEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeec---cCCcEEEEECcCChHHCeEEEEEEEe
Confidence 368998865432 4678877653222222222111 12565553 33567999999999999999999875
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.40 E-value=4.3e-07 Score=54.33 Aligned_cols=78 Identities=23% Similarity=0.432 Sum_probs=48.7
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeCC-----CCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDSS-----RGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
.+|+.+.+.+|+.++|.|......... +.|++.. + .+..... ...+......+ ....|.|++++.+
T Consensus 5 tQp~sl~~~~G~svtl~C~~~~~~~~~--i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~~~ 80 (109)
T d1w72l1 5 TQPPSVSVAPGQTARITCGGNNIGSRS--VHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSG--NMATLTISRVEAG 80 (109)
T ss_dssp BCCSEEEECTTSCEEEEEECTTGGGSC--CEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET--TEEEEEESSCCGG
T ss_pred eeCCeEEECCCCCEEEEEEcCCCCCcc--eeeeeccccceeEEEEEccccCCCceeeeEeeecCC--CccceEEeeeccC
Confidence 345678899999999999865332233 8999753 2 1211110 11122222222 2356999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|++.|.|.+...
T Consensus 81 DsavYyCA~~~~ 92 (109)
T d1w72l1 81 DEADYYCQVWDS 92 (109)
T ss_dssp GCEEEEEEEEET
T ss_pred CCEEEEEEecCC
Confidence 999999987643
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.40 E-value=1.1e-06 Score=53.04 Aligned_cols=76 Identities=20% Similarity=0.445 Sum_probs=52.2
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE----ee---------CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS----YD---------SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~----~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
...+.+|+.+.|.|.+.+.......+.|.++. +.++ .. .+..++..+..+.......|.|+++..
T Consensus 8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~ 87 (124)
T d1zvya1 8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS 87 (124)
T ss_dssp CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence 34678899999999999876666668999853 2211 11 111234444444444556799999999
Q ss_pred cCCEEEEEEcc
Q psy13371 160 KDSGKYSCSPS 170 (212)
Q Consensus 160 ~d~g~y~C~~~ 170 (212)
+|++.|.|...
T Consensus 88 eDtAvYYCAr~ 98 (124)
T d1zvya1 88 EDTAIYTCGAT 98 (124)
T ss_dssp GGCEEEEEEEC
T ss_pred CcceEEEEeec
Confidence 99999999754
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.40 E-value=4.1e-07 Score=54.67 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=49.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..+......+.|+|...... ... .........|+....+.......|+|.+++++|+|.|.|....
T Consensus 18 vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~ 93 (110)
T d1ac6a_ 18 LTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALSG 93 (110)
T ss_dssp EEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEEEEEE
T ss_pred EEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccceeecC
Confidence 4689998776667899999764221 111 1111122467877765666778899999999999999997654
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.40 E-value=9.1e-07 Score=52.80 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=46.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee---ecceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT---VGSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+.....+.|+|........ ...... ....++... .......|+|.+++.+|+|.|.|....
T Consensus 19 vtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~l~~~Dsa~YyCA~~~ 92 (108)
T d1jhll_ 19 ITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGS--GSGTDFTLTISSLEPEDFAMYICQQHN 92 (108)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--ESSSEEEEEECSCCTTCCSEEEEEECS
T ss_pred EEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCcccccccc--CCCCEEEeEeeeeEeccceEEEEeeCC
Confidence 479999988777789999876422211 111111 112455554 455678999999999999999997654
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.39 E-value=2.9e-07 Score=55.86 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=46.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcce----eeee--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIH----ILTV--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~----~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+.....+.|+|..+.. +... .........++............|+|.+++.+|+|.|.|....
T Consensus 18 vtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 94 (115)
T d1i9ea_ 18 LQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSG 94 (115)
T ss_dssp EEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceecccccC
Confidence 468999887777889999865322 1111 1111122234444433455678899999999999999997654
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.3e-07 Score=57.23 Aligned_cols=77 Identities=14% Similarity=0.314 Sum_probs=46.4
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEeeCCCC--------ceeEEeecCceEEEEEEEeeeeecCC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYDSSRG--------GVSVITEKGEVTTSYLLIQQAELKDS 162 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~ 162 (212)
..+.+|+.++|.|...+.......+.|++... .+....... ++.....+......+|.|.+++.+|+
T Consensus 9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds 88 (113)
T d1smoa_ 9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS 88 (113)
T ss_dssp EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence 45778999999998753212222388998531 121111100 12222222222335699999999999
Q ss_pred EEEEEEcccC
Q psy13371 163 GKYSCSPSNA 172 (212)
Q Consensus 163 g~y~C~~~n~ 172 (212)
|.|.|.+...
T Consensus 89 g~Y~Cav~~~ 98 (113)
T d1smoa_ 89 GLYQCVIYQP 98 (113)
T ss_dssp EEEEEEECCT
T ss_pred ceEEEEEECC
Confidence 9999988654
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.39 E-value=1.6e-06 Score=52.04 Aligned_cols=78 Identities=29% Similarity=0.313 Sum_probs=48.5
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE---EEeeCCCC-----ceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV---ISYDSSRG-----GVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~---~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+.|..+.+.+|+.++|.|........ .+.|++.. +. +....... .+.............|.|+++..+
T Consensus 4 Q~P~~~~~~~G~~vtl~C~~~~~~~~--~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (110)
T d1u3ha1 4 QSPQSLTVWEGETAILNCSYENSAFD--YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG 81 (110)
T ss_dssp CSCSSEEEETTSCEEEEEEECCTTEE--EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred ecCCEEEEcCCCCEEEEEEecCCCCc--EEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence 44667889999999999987643222 48999852 21 11111110 011111112223457999999999
Q ss_pred CCEEEEEEcc
Q psy13371 161 DSGKYSCSPS 170 (212)
Q Consensus 161 d~g~y~C~~~ 170 (212)
|+|.|.|.+.
T Consensus 82 Dsa~YyCa~~ 91 (110)
T d1u3ha1 82 DSATYFCAAS 91 (110)
T ss_dssp SCSEEEECCE
T ss_pred CceeEeeeec
Confidence 9999999875
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.39 E-value=1.4e-06 Score=52.51 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=47.0
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeee----c-ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTV----G-SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~----~-~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+++.. ...+.|+|..+...... . .......+|+.... ..+...|+|.+++.+|+|.|.|....
T Consensus 18 vtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~DsA~YyCA~~~ 93 (114)
T d2rhea_ 18 VTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK--SGTSASLAISGLESEDEADYYCAAWN 93 (114)
T ss_dssp EEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC--CCCeeeeEecccCcccCceEEEeecC
Confidence 46999987654 57899998764322111 1 11112235777764 35678999999999999999998754
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.39 E-value=3.9e-07 Score=54.44 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=47.4
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----ecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----VGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+.....+.|+|........ ... .......||.... ..+..+|+|.+++++|+|.|.|....
T Consensus 19 vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~~ 92 (107)
T d3cx5k1 19 VTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG--SGTDYSLTISNLEPEDIATYFCQHHI 92 (107)
T ss_dssp CEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE--ETTEEEEECSCCCSCCCSEEEEEECS
T ss_pred EEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc--cCCEEEEEEeEeeecCCCcEEeeeCC
Confidence 479999888777789999876422211 111 1111235776653 44678999999999999999997654
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=98.39 E-value=1.3e-06 Score=52.00 Aligned_cols=77 Identities=14% Similarity=0.302 Sum_probs=52.3
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE------------eeCCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS------------YDSSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
...+.+|+.+.|.|.+.+..-....+.|+++. +.++ +.....++..+..+.......|.|++++.+
T Consensus 9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e 88 (116)
T d1a2yb_ 9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD 88 (116)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence 34678899999999999875555568898862 2211 111122344444444445567999999999
Q ss_pred CCEEEEEEccc
Q psy13371 161 DSGKYSCSPSN 171 (212)
Q Consensus 161 d~g~y~C~~~n 171 (212)
|++.|.|....
T Consensus 89 DTAvYYCAr~~ 99 (116)
T d1a2yb_ 89 DTARYYCARER 99 (116)
T ss_dssp GCEEEEEEEES
T ss_pred cceEEEEEEeC
Confidence 99999997543
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=98.39 E-value=1.1e-06 Score=51.60 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=51.6
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE---------------eeCCCCceeEEeecCceEEEEEEEee
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS---------------YDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
....+.+|+.++|.|.+.+.......+.|.++ ++.++ +.....++..+..+....+..|.|++
T Consensus 8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s 87 (109)
T d2ck0h1 8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN 87 (109)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence 34568899999999999876544445889875 22221 11112234445544444556799999
Q ss_pred eeecCCEEEEEEcc
Q psy13371 157 AELKDSGKYSCSPS 170 (212)
Q Consensus 157 ~~~~d~g~y~C~~~ 170 (212)
++.+|++.|.|...
T Consensus 88 L~~eDTAvYYCAr~ 101 (109)
T d2ck0h1 88 LKTEDTGIYYCVRG 101 (109)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred CCHhHCEEEEEEEc
Confidence 99999999999743
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.39 E-value=1.2e-06 Score=53.03 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=48.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceee----ee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHIL----TV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~----~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+. ...+.|+|....... .. ........+++....+......+|+|.+++.+|+|.|.|....
T Consensus 18 vtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 92 (115)
T d1ogad1 18 LTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAG 92 (115)
T ss_dssp EEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEcccccC
Confidence 4689998764 457999997643211 11 1111222467777665677889999999999999999998754
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.38 E-value=4.9e-07 Score=54.51 Aligned_cols=79 Identities=18% Similarity=0.374 Sum_probs=49.5
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCC-CCceEEEEEcC--e---EEEeeC-----CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYHHD--E---VISYDS-----SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~-p~~~v~W~~~~--~---~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+|..+.+.+|+.++|.|...+... ....+.|++.. + .+.... ....+......+ ....|.|++++.+
T Consensus 6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~~~ 83 (112)
T d1lgva1 6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSG--NSASLTISGLQAE 83 (112)
T ss_dssp CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET--TEEEEEECSCCGG
T ss_pred CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCC--CEeeEEeCcCccc
Confidence 467788999999999998764321 22238999853 1 111110 011122222222 2467999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+.+.
T Consensus 84 Dsa~YyCa~~~~ 95 (112)
T d1lgva1 84 DEADYYCSSYDG 95 (112)
T ss_dssp GCEEEEEEEECS
T ss_pred cCEEEEEeeecC
Confidence 999999987643
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.38 E-value=1.7e-06 Score=51.68 Aligned_cols=77 Identities=17% Similarity=0.344 Sum_probs=52.6
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE-------------eeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
...+++|+.+.|.|.+.+.......+.|.++ |+.++ +.....++..+..+.......|.|++++.
T Consensus 9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~ 88 (118)
T d2fbjh1 9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS 88 (118)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence 4568889999999999886544445788875 22221 11122334455555555556799999999
Q ss_pred cCCEEEEEEccc
Q psy13371 160 KDSGKYSCSPSN 171 (212)
Q Consensus 160 ~d~g~y~C~~~n 171 (212)
+|++.|.|....
T Consensus 89 eDtAvYYCAr~~ 100 (118)
T d2fbjh1 89 EDTALYYCARLH 100 (118)
T ss_dssp GGCEEEEEEEEE
T ss_pred CcceEEEeeEec
Confidence 999999997644
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.38 E-value=1.3e-06 Score=52.33 Aligned_cols=75 Identities=23% Similarity=0.359 Sum_probs=50.8
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE---ee---------CCCCceeEEeecCceEEEEEEEeeeeecC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS---YD---------SSRGGVSVITEKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~---~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 161 (212)
..+.+|+.+.|.|.+.+.......+.|+++. +.++ .- ....++..+..+.......|.|++++.+|
T Consensus 9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD 88 (119)
T d1kxvc_ 9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD 88 (119)
T ss_dssp EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence 4678899999999998875556568899863 2221 11 11122344444444445679999999999
Q ss_pred CEEEEEEcc
Q psy13371 162 SGKYSCSPS 170 (212)
Q Consensus 162 ~g~y~C~~~ 170 (212)
++.|.|...
T Consensus 89 tA~YYCAr~ 97 (119)
T d1kxvc_ 89 TAMYYCKPS 97 (119)
T ss_dssp CEEEEEEEE
T ss_pred cceEeeeec
Confidence 999999754
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=5.2e-06 Score=45.07 Aligned_cols=68 Identities=25% Similarity=0.349 Sum_probs=45.0
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCCeeEEE
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNADVASVY 178 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~ 178 (212)
..|..+.|.|.....+.+...-.|+++|..+..+..... . ....+. ..+++|.|.|...........
T Consensus 10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~-~----------tey~V~--~~D~SGeY~CVFl~~P~~~a~ 76 (80)
T d3b5ha2 10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ-K----------TEFKVD--SDDQWGEYSCVFLPEPMGTAN 76 (80)
T ss_dssp EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS-E----------EEEEEC--GGGCCEEEEEEEESTTSCEEE
T ss_pred cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCC-c----------eEEEEe--cCCCCceEEEEEcCCCcceeE
Confidence 457788999999876656656799999998864322211 0 114444 378999999997665433333
Q ss_pred E
Q psy13371 179 V 179 (212)
Q Consensus 179 ~ 179 (212)
+
T Consensus 77 I 77 (80)
T d3b5ha2 77 I 77 (80)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=98.38 E-value=2e-06 Score=51.31 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=51.5
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE------------eeCCCCceeEEeecCceEEEEEEEeeeeecC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS------------YDSSRGGVSVITEKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 161 (212)
..+.+|+.+.|.|.+.+.......+.|+++. +.++ +.....++..+..+.......|.|+++..+|
T Consensus 10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD 89 (118)
T d1lo4h1 10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED 89 (118)
T ss_dssp CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence 4678899999999999876666678898862 2221 1122223444444444445579999999999
Q ss_pred CEEEEEEcc
Q psy13371 162 SGKYSCSPS 170 (212)
Q Consensus 162 ~g~y~C~~~ 170 (212)
++.|.|...
T Consensus 90 tA~YyCAr~ 98 (118)
T d1lo4h1 90 TAIYYCARG 98 (118)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEeccc
Confidence 999999643
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.38 E-value=5.1e-07 Score=53.80 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=47.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----ecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----VGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.....+.|+|........ ... .......||.... ......|+|.+++++|+|.|.|....
T Consensus 18 vtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~~ 91 (106)
T d1op3k1 18 ITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG--SGTEFTLTISGLQFDDFATYHCQHYA 91 (106)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEEESCCGGGCSEEEEEEEC
T ss_pred EEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec--cCCEEEEEEccccccCCCcEeeeeCC
Confidence 469999988777789999976422211 111 1111236887763 45677899999999999999997654
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.37 E-value=1.1e-06 Score=52.55 Aligned_cols=78 Identities=18% Similarity=0.339 Sum_probs=50.9
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEe----eCC---------CCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISY----DSS---------RGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~----~~~---------~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.+.|.|.+.+.......+.|+++ ++.++. ... ..++..+..+....+..|.|+++
T Consensus 7 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL 86 (119)
T d1eapb1 7 SGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSL 86 (119)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecc
Confidence 344567899999999999876544445889875 222211 111 12233343333334457999999
Q ss_pred eecCCEEEEEEcc
Q psy13371 158 ELKDSGKYSCSPS 170 (212)
Q Consensus 158 ~~~d~g~y~C~~~ 170 (212)
+.+|++.|.|...
T Consensus 87 ~~eDTAvYYCAr~ 99 (119)
T d1eapb1 87 TSEDSAVYFCKRS 99 (119)
T ss_dssp CGGGCEEEEEEEC
T ss_pred cCCcceEEEEEEe
Confidence 9999999999643
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.37 E-value=2.8e-06 Score=50.94 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=50.0
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCC--CCCceEEEEEcC--eEE---Eee-----CCCCceeEEeecCceEEEEEEEeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSP--EPPAYIFWYHHD--EVI---SYD-----SSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~--~p~~~v~W~~~~--~~~---~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
.+.|..+.+.+|+.++|.|...... .....+.|+++. +.. ... .....+......+ ....|.|+++
T Consensus 5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~--~~~~L~I~~~ 82 (111)
T d2gsia1 5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSG--TDFTLNIHPV 82 (111)
T ss_dssp EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSC
T ss_pred EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCC--Cchhcccccc
Confidence 3456778899999999999875321 112238999853 211 111 0011222222222 2356999999
Q ss_pred eecCCEEEEEEcccC
Q psy13371 158 ELKDSGKYSCSPSNA 172 (212)
Q Consensus 158 ~~~d~g~y~C~~~n~ 172 (212)
+.+|++.|.|.+...
T Consensus 83 ~~~DsA~YyCa~~~~ 97 (111)
T d2gsia1 83 EEEDAATYYCSHIRE 97 (111)
T ss_dssp CGGGCEEEEEEECSS
T ss_pred cccCCceEEEEECCC
Confidence 999999999987644
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.37 E-value=5.3e-06 Score=50.02 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=50.8
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e--E-EEeeCCCC-----ceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E--V-ISYDSSRG-----GVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~--~-~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|...+. .. .+.|++.. + . +....... ...............|.|.+++.
T Consensus 4 ~Q~P~~~~~~~G~svtl~C~~s~~-~~--~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 80 (115)
T d1ogad1 4 EQSPQFLSIQEGENLTVYCNSSSV-FS--SLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP 80 (115)
T ss_dssp EEECSEEEEETTCCEEEEEECSSC-CS--CEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG
T ss_pred EeCCCeEEECCCCCEEEEEEECCC-Cc--eEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCc
Confidence 345677889999999999987543 23 38999853 1 1 11111111 11112222233456799999999
Q ss_pred cCCEEEEEEcccC
Q psy13371 160 KDSGKYSCSPSNA 172 (212)
Q Consensus 160 ~d~g~y~C~~~n~ 172 (212)
+|+|.|.|.+...
T Consensus 81 ~Dsa~YyCa~~~~ 93 (115)
T d1ogad1 81 GDTGLYLCAGAGS 93 (115)
T ss_dssp GGCEEEEEEEECT
T ss_pred cceeeEcccccCC
Confidence 9999999987643
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.37 E-value=1e-06 Score=52.73 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=49.8
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeC-----CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDS-----SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+.|..+.+.+|+.++|.|..... .....+.|++.. + .+.... ....+......+ ....|.|+++..+
T Consensus 6 Q~P~~~~v~~G~tv~l~C~~~~~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~--~~~~L~I~~~~~~ 82 (108)
T d2fx7l1 6 QSPGTQSLSPGERATLSCRASQS-VGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSG--TDFTLTISRLEPE 82 (108)
T ss_dssp CSSSEEEECTTCCEEEEEEESSC-CGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET--TEEEEEESSCCGG
T ss_pred eeCCeEEECCCCCEEEEEEeecC-CCCccceeEeccccCCCEEEEeeecccccCCccceeeecCC--CEEEEEehHheec
Confidence 45677789999999999987533 122348899863 2 121111 111122222222 2356999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+...
T Consensus 83 Dsa~YyCa~~~~ 94 (108)
T d2fx7l1 83 DFAVYYCQQYGQ 94 (108)
T ss_dssp GCSEEEEEECSS
T ss_pred ccEEEeeecCCC
Confidence 999999987643
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.37 E-value=1.5e-06 Score=52.31 Aligned_cols=78 Identities=17% Similarity=0.307 Sum_probs=50.9
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEe----eCC---------CCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISY----DSS---------RGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~----~~~---------~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.++|.|.+.+.......+.|+++ |+.++. ... ..++..+..+.......|.|+++
T Consensus 7 sg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l 86 (120)
T d1pg7x1 7 SGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRL 86 (120)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccccc
Confidence 334568899999999999876544445889985 332221 111 12233343333334456999999
Q ss_pred eecCCEEEEEEcc
Q psy13371 158 ELKDSGKYSCSPS 170 (212)
Q Consensus 158 ~~~d~g~y~C~~~ 170 (212)
+.+|++.|.|...
T Consensus 87 ~~eDtA~YYCAr~ 99 (120)
T d1pg7x1 87 TSNDSAVYYCARE 99 (120)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCcceEEEeeec
Confidence 9999999999754
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.37 E-value=6.5e-07 Score=53.42 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=47.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eeecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTVGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.....+.|+|...... ...... ......|+.... ......|+|.+++++|+|.|.|....
T Consensus 19 vtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~DsA~YyCa~~~ 92 (107)
T d1tjgl1 19 ITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSG--SGTEFTLTISTLRPEDFATYYCQQLH 92 (107)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred EEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEec--cCCEEEEEeccceeCcCceEEEEECc
Confidence 4699999877778999999664221 111111 111235777653 45678999999999999999997654
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.37 E-value=1.3e-06 Score=52.11 Aligned_cols=77 Identities=17% Similarity=0.321 Sum_probs=50.7
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEe----e---------CCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISY----D---------SSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~----~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.+.|.|.+.+.......+.|.++ |+.++. . ....++..+..+.......|.|+++
T Consensus 7 sg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L 86 (118)
T d1nlbh1 7 SGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSL 86 (118)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeec
Confidence 344568899999999999876544445889875 222211 1 1112344444444444557999999
Q ss_pred eecCCEEEEEEc
Q psy13371 158 ELKDSGKYSCSP 169 (212)
Q Consensus 158 ~~~d~g~y~C~~ 169 (212)
+.+|++.|.|..
T Consensus 87 ~~eDtAvYYCAr 98 (118)
T d1nlbh1 87 KNEDTATYFCAR 98 (118)
T ss_dssp CGGGCEEEEEEE
T ss_pred ccCcceEEEEee
Confidence 999999999953
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.37 E-value=6.4e-07 Score=53.47 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=47.5
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----ecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----VGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.........+.|+|..+..... .... .-....||.... ...+.+|+|.+++++|+|.|.|....
T Consensus 19 vtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~~ 92 (107)
T d1d5il1 19 VTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG--SGQDYSLTISSLEYEDMGIYYCLQYD 92 (107)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc--cCCEEEccccccCCcCCEEEEeeecc
Confidence 469999988777889999876422111 1111 111136887763 35678999999999999999997654
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.36 E-value=1.4e-06 Score=52.04 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=51.5
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE-------------eeCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
....+.+|+.+.|.|.+.+.......+.|.++ ++.++ +..+..++..+..+.......|.|++++
T Consensus 8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~ 87 (120)
T d1ad9b1 8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR 87 (120)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence 34568899999999999876555556888875 22221 1111223444444444445679999999
Q ss_pred ecCCEEEEEEcc
Q psy13371 159 LKDSGKYSCSPS 170 (212)
Q Consensus 159 ~~d~g~y~C~~~ 170 (212)
.+|++.|.|...
T Consensus 88 ~eDTAvYYCAr~ 99 (120)
T d1ad9b1 88 SEDTAFYFCARE 99 (120)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCcceEEEEEEc
Confidence 999999999653
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.36 E-value=2.2e-06 Score=50.79 Aligned_cols=77 Identities=23% Similarity=0.367 Sum_probs=48.3
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEee-----CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYD-----SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|..... ... +.|++... .+... ............+ ....|.|.++..
T Consensus 4 tQsP~~l~~~~G~~vtl~C~~s~~-~~~--~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~L~I~~~~~ 78 (104)
T d1yqvl1 4 TQSPAIMSASPGEKVTMTCSASSS-VNY--MYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSG--TSYSLTISSMET 78 (104)
T ss_dssp EEESSEEEECTTCCEEEEEEESSC-CSC--CEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET--TEEEEEESSCCG
T ss_pred eCcCCeEEECCCCCEEEEEEeCCC-CCc--cEEEEeeccCceEEEEecccccCCCcCceEEEecCC--CEEEEEecccCc
Confidence 355677889999999999986433 233 79998631 11111 0011112222222 235699999999
Q ss_pred cCCEEEEEEccc
Q psy13371 160 KDSGKYSCSPSN 171 (212)
Q Consensus 160 ~d~g~y~C~~~n 171 (212)
+|+|.|.|....
T Consensus 79 ~Dsa~YyCa~~~ 90 (104)
T d1yqvl1 79 EDAATYYCQQWG 90 (104)
T ss_dssp GGCEEEEEEECS
T ss_pred ccCCeEEEEecC
Confidence 999999997654
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.36 E-value=2.9e-06 Score=51.15 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=49.8
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEE-eeCCCCc-----eeEEeecCceEEEEEEEeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VIS-YDSSRGG-----VSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~-~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~ 158 (212)
.+.|..+.+.+|+.++|.|...... ....+.|++.. + .+. ....... +......+......|.|.++.
T Consensus 4 tQ~~~~v~v~~G~~VtL~C~~~~~~-~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 82 (114)
T d2ak4d1 4 TQAQTEISVVEKEDVTLDCVYETRD-TTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ 82 (114)
T ss_dssp ECCCCEEEEETTCCEEECCEEECSC-SSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred EecCCeEEEeCCCCEEEEEEEcCCC-cCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence 3456677899999999999875432 22247899842 2 111 1111111 111112222234579999999
Q ss_pred ecCCEEEEEEcccC
Q psy13371 159 LKDSGKYSCSPSNA 172 (212)
Q Consensus 159 ~~d~g~y~C~~~n~ 172 (212)
.+|+|.|.|.+...
T Consensus 83 ~~Dsg~YyCa~~~~ 96 (114)
T d2ak4d1 83 VVDSAVYFCALSGF 96 (114)
T ss_dssp GGGCEEEEEEEECS
T ss_pred cccCCCceEeCCCC
Confidence 99999999976543
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.36 E-value=3.6e-07 Score=54.25 Aligned_cols=69 Identities=22% Similarity=0.199 Sum_probs=47.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeee-----cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTV-----GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.....+.|+|..+...... .........++... .......|.|.+++++|+|.|.|....
T Consensus 16 vtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~l~~~Dsa~YyCA~~~ 89 (103)
T d8faba1 16 ARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSS--TSGTTVTLTISGVQAEDEADYYCQAWD 89 (103)
T ss_dssp EEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE--EETTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred EEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEEC--CCCCccCceEcCcchhHCceEEeeecC
Confidence 4689999887777899999765322211 01111123566665 345678999999999999999997654
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=7.6e-07 Score=54.10 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=43.8
Q ss_pred CeeEeeeCCCCC---ceEEEEeeCcceeeeec------ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLP---TRVSWIRHRDIHILTVG------SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~---~~v~W~~~~~~~~~~~~------~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+... ..+.|+|.........- .......+++....+.......|+|.+++.+|+|.|.|.+..
T Consensus 17 v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~ 96 (117)
T d1dqta_ 17 ASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLCKVEL 96 (117)
T ss_dssp EEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCEeEEEEEec
Confidence 369999865433 35889997643322110 111111233333333456778999999999999999998753
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.35 E-value=1.2e-06 Score=52.60 Aligned_cols=78 Identities=15% Similarity=0.303 Sum_probs=51.6
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEEe----e---------CCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISY----D---------SSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~~----~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+++|+.+.|.|.+.+..-....+.|+++. +.++. . ....++..+..+.......|.|+++
T Consensus 8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L 87 (122)
T d1vgeh1 8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL 87 (122)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence 3445789999999999998765444468898853 22211 1 1112344444444344456999999
Q ss_pred eecCCEEEEEEcc
Q psy13371 158 ELKDSGKYSCSPS 170 (212)
Q Consensus 158 ~~~d~g~y~C~~~ 170 (212)
+.+|++.|.|...
T Consensus 88 ~~eDtA~YYCAr~ 100 (122)
T d1vgeh1 88 RPEDTAVYYCARD 100 (122)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCcceEEEEeec
Confidence 9999999999754
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=8e-07 Score=53.15 Aligned_cols=78 Identities=14% Similarity=0.254 Sum_probs=50.1
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeCCC--------CceeEEeecCceEEEEEEEeeeeecC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDSSR--------GGVSVITEKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d 161 (212)
...+.+|+.++|.|...+.......+.|++.. + .+...... .++..+..+......+|.|++++.+|
T Consensus 4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD 83 (110)
T d1u9ka_ 4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD 83 (110)
T ss_dssp EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence 35688999999999986432233347899852 2 12111111 12233344444445679999999999
Q ss_pred CEEEEEEcccC
Q psy13371 162 SGKYSCSPSNA 172 (212)
Q Consensus 162 ~g~y~C~~~n~ 172 (212)
+|.|.|...+.
T Consensus 84 sa~YyCa~~~~ 94 (110)
T d1u9ka_ 84 SGLYRCVIYHP 94 (110)
T ss_dssp CEEEEEEEECT
T ss_pred CEEEEEEEeCC
Confidence 99999998654
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.35 E-value=2.6e-06 Score=51.82 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=51.5
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--Ce--E-EEee-----CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DE--V-ISYD-----SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~--~-~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
...+....+.+|+.++|.|...+.......+.|++. ++ . +... .....+.....+.......|.|.+++.
T Consensus 5 v~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~ 84 (120)
T d1hxma1 5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE 84 (120)
T ss_dssp EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred eccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccc
Confidence 345566789999999999998754322234899984 22 1 2111 111122222222222346799999999
Q ss_pred cCCEEEEEEccc
Q psy13371 160 KDSGKYSCSPSN 171 (212)
Q Consensus 160 ~d~g~y~C~~~n 171 (212)
+|+|.|.|....
T Consensus 85 ~Dsa~YyCA~~~ 96 (120)
T d1hxma1 85 RDEGSYYCACDT 96 (120)
T ss_dssp GGCEEEEEEEEC
T ss_pred cCCceeecCccc
Confidence 999999997654
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.35 E-value=1.6e-06 Score=52.16 Aligned_cols=79 Identities=23% Similarity=0.431 Sum_probs=50.5
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE----eeCC---------CCceeEEeecCceEEEEEEEee
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS----YDSS---------RGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~----~~~~---------~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.+....+.+|+.++|.|.+.+.......+.|+++. +.++ .... ..++..+..+.......|.|++
T Consensus 6 esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~ 85 (121)
T d1j05b_ 6 QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS 85 (121)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccc
Confidence 34455788999999999998764444458898852 2211 1111 1123333333333345699999
Q ss_pred eeecCCEEEEEEcc
Q psy13371 157 AELKDSGKYSCSPS 170 (212)
Q Consensus 157 ~~~~d~g~y~C~~~ 170 (212)
++.+|++.|.|...
T Consensus 86 L~~eDtAvYYCAr~ 99 (121)
T d1j05b_ 86 LTSEDTAVYYCAPF 99 (121)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCcCcceEEEeEee
Confidence 99999999999753
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.35 E-value=1.4e-06 Score=51.59 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=50.9
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE----e---------eCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS----Y---------DSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~----~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
...+.+|+.+.|.|.+.+.......+.|+++. +.++ . .....++..+..+.......|.|+++..
T Consensus 9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~ 88 (114)
T d1indh1 9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS 88 (114)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence 34688999999999998765444458898853 2221 1 1111234444444444455799999999
Q ss_pred cCCEEEEEEcc
Q psy13371 160 KDSGKYSCSPS 170 (212)
Q Consensus 160 ~d~g~y~C~~~ 170 (212)
+|++.|.|...
T Consensus 89 eDtAvYYCA~~ 99 (114)
T d1indh1 89 EDTALYFCASH 99 (114)
T ss_dssp GGCEEEEEECG
T ss_pred CcccEEEECCC
Confidence 99999999754
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=2e-06 Score=49.92 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=43.5
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.|+.++|.|.+.++.++.+.+.|.+++..+.. .........+..+.+......+...+...|+|.+.+.
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~----~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~ 82 (94)
T d1t7va1 14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEP----ELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHS 82 (94)
T ss_dssp TTSCEEEEEEEEEEBSSCEEEEEEETTEECCC----SEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEET
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECCC----cEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEEC
Confidence 47789999999998767788999999986521 1111111222212222333344555666899999987
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.35 E-value=1.1e-06 Score=52.92 Aligned_cols=79 Identities=24% Similarity=0.459 Sum_probs=48.7
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e-E--EEeeCCC----CceeEEeecCceEEEEEEEeeeeec
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E-V--ISYDSSR----GGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~-~--~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
.+.|..+.+.+|+.++|.|..... .. .+.|++.. . + +...... ..............+.|.|+++..+
T Consensus 5 ~Q~P~~~~v~~G~~vtl~C~~~~~-~~--~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (113)
T d1h5ba_ 5 EQSPSALSLHEGTDSALRCNFTTT-MR--SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE 81 (113)
T ss_dssp EEECSEEEEETTCCEEEEEEESSC-CS--EEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred EECCCEEEEcCCCCEEEEEEEecC-Cc--cceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHh
Confidence 445677889999999999987543 23 48999853 2 1 1111110 0011111111113456999999999
Q ss_pred CCEEEEEEccc
Q psy13371 161 DSGKYSCSPSN 171 (212)
Q Consensus 161 d~g~y~C~~~n 171 (212)
|+|.|.|.+..
T Consensus 82 Dsa~YyCa~~~ 92 (113)
T d1h5ba_ 82 DSGTYFCAAEA 92 (113)
T ss_dssp GCEEEEEEEEC
T ss_pred HCEEEEEEecC
Confidence 99999998764
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=3.2e-07 Score=54.36 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=46.4
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.++.++|.|.+.+..+..+.|.|.++|..+....... ......++. ...+.|.+..-.......|+|.+.+..
T Consensus 19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~-~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~ 92 (102)
T d1q0xl2 19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETT-QPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG 92 (102)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC-CCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEec-ccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 3567899999998766667899999998763211110 111222333 234567775444455669999999874
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.34 E-value=1.4e-06 Score=51.98 Aligned_cols=77 Identities=16% Similarity=0.311 Sum_probs=49.1
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE----eeCCC---------CceeEEeecCceEEEEEEEeeee
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS----YDSSR---------GGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~----~~~~~---------~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
....+.+|+.++|.|.+.+.......+.|+++ ++.++ ..... .++.....+....+..|.|++++
T Consensus 8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~ 87 (115)
T d1f3dh1 8 GPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLT 87 (115)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecC
Confidence 34568889999999999876434445889875 33332 11111 12233333333334569999999
Q ss_pred ecCCEEEEEEcc
Q psy13371 159 LKDSGKYSCSPS 170 (212)
Q Consensus 159 ~~d~g~y~C~~~ 170 (212)
.+|++.|.|...
T Consensus 88 ~eDtAvYYCAr~ 99 (115)
T d1f3dh1 88 FEDSAVYYCAND 99 (115)
T ss_dssp GGGCEEEEEEEC
T ss_pred cCCcEEEEEecc
Confidence 999999999643
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.34 E-value=1.5e-06 Score=51.89 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=47.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----ecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----VGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.........+.|+|........ ... ..-...+||.... ......|+|.+++++|+|.|.|....
T Consensus 17 vtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~--~~~~~~L~I~~l~~~Dsa~YyCA~~~ 90 (108)
T d1nfde1 17 VKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPEDEAAYYCLSSY 90 (108)
T ss_dssp CCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCSEEEEEEEE
T ss_pred EEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecC--CCCEeeeeEcCccccCCceEEEEeec
Confidence 579999877666789999976432211 111 1111236888764 34567899999999999999998654
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.34 E-value=2.6e-06 Score=51.54 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=52.5
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEE-------------EeeCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVI-------------SYDSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
....+.+|+.+.|.|.+.+.......+.|.++- +.+ .+.....++..+..+....+..|.|++++
T Consensus 8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~ 87 (128)
T d2nxyd1 8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR 87 (128)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence 345688999999999999875555457887742 211 11222334555555544455679999999
Q ss_pred ecCCEEEEEEcc
Q psy13371 159 LKDSGKYSCSPS 170 (212)
Q Consensus 159 ~~d~g~y~C~~~ 170 (212)
.+|++.|.|...
T Consensus 88 ~eDTA~YYCAr~ 99 (128)
T d2nxyd1 88 SDDTAVYFCAGV 99 (128)
T ss_dssp GGGCEEEEEEEE
T ss_pred ccCceEEEEeEE
Confidence 999999999754
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.34 E-value=1.4e-06 Score=51.94 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=50.2
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEe----eCCC---------CceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISY----DSSR---------GGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~----~~~~---------~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.+.|.|.+.+.......+.|+++ |+.++. .... .++..+..+.......|.|+++
T Consensus 7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL 86 (118)
T d2jelh1 7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARL 86 (118)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccc
Confidence 344568899999999999877555456889885 222211 1111 1233333333334456999999
Q ss_pred eecCCEEEEEEc
Q psy13371 158 ELKDSGKYSCSP 169 (212)
Q Consensus 158 ~~~d~g~y~C~~ 169 (212)
+.+|++.|.|..
T Consensus 87 ~~eDTAvYYCAr 98 (118)
T d2jelh1 87 TSEDSAIYYCAR 98 (118)
T ss_dssp CGGGCEEEEEEE
T ss_pred ccCcceeeeEEE
Confidence 999999999953
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.34 E-value=2.1e-06 Score=51.66 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=46.4
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcceeeee-----cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIHILTV-----GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|...+.. ...+.|+|..+...... .........+++... ..+...|+|.+++++|+|.|.|.....
T Consensus 18 vtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~Dsa~YyCa~~~~ 95 (112)
T d1lgva1 18 ITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK--SGNSASLTISGLQAEDEADYYCSSYDG 95 (112)
T ss_dssp EEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC--CCCEeeEEeCcCccccCEEEEEeeecC
Confidence 46899987652 35699999764322211 111112236777663 346789999999999999999987653
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.33 E-value=5.7e-07 Score=53.69 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=49.5
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE---EEee-----CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV---ISYD-----SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~---~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
.+.|..+.+.+|+.++|.|......... +.|++.. +. +... .....+......+ ....|.|++++.
T Consensus 5 tQsP~s~~~~~G~~vtl~C~~s~~~~~~--~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~--~~~~L~I~~~~~ 80 (107)
T d3cx5k1 5 TQTPVSLAASLGDRVTISCRASQDINNF--LNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSG--TDYSLTISNLEP 80 (107)
T ss_dssp EEESTTCCBCSSSCCEEEEEESSCCTTC--EEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEET--TEEEEECSCCCS
T ss_pred ECcCCEEEECCCCCEEEEEEcCCCcCCC--eEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccC--CEEEEEEeEeee
Confidence 3557778899999999999876543344 8999753 21 1110 0111111111122 235699999999
Q ss_pred cCCEEEEEEccc
Q psy13371 160 KDSGKYSCSPSN 171 (212)
Q Consensus 160 ~d~g~y~C~~~n 171 (212)
+|+|.|.|.+..
T Consensus 81 ~Dsa~YyCa~~~ 92 (107)
T d3cx5k1 81 EDIATYFCQHHI 92 (107)
T ss_dssp CCCSEEEEEECS
T ss_pred cCCCcEEeeeCC
Confidence 999999997653
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.33 E-value=2.3e-06 Score=51.30 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=49.5
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCC--CCCceEEEEEc--Ce---EEEeeC-----CCCceeEEeecCceEEEEEEEeeee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSP--EPPAYIFWYHH--DE---VISYDS-----SRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~--~p~~~v~W~~~--~~---~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
+.|..+.+.+|+.++|.|...... .....+.|++. ++ .+.... ....+..... ......|.|++++
T Consensus 6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~ 83 (111)
T d1j05a_ 6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIIDPVE 83 (111)
T ss_dssp EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC--SSSEEEEEESSCC
T ss_pred ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEec--CCCEEEEEEcccc
Confidence 456777889999999999874321 12223899985 22 121111 0111222222 2234679999999
Q ss_pred ecCCEEEEEEcccC
Q psy13371 159 LKDSGKYSCSPSNA 172 (212)
Q Consensus 159 ~~d~g~y~C~~~n~ 172 (212)
.+|+|.|.|.+.+.
T Consensus 84 ~~Dsa~YyCa~~~~ 97 (111)
T d1j05a_ 84 ADDVATYYCQQTNE 97 (111)
T ss_dssp GGGCEEEEEEECSS
T ss_pred cccCccEEEeecCC
Confidence 99999999987654
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=98.33 E-value=3.9e-06 Score=50.04 Aligned_cols=77 Identities=18% Similarity=0.380 Sum_probs=51.2
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEe-------------eCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISY-------------DSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
....+.+|+.+.|.|.+.+.......+.|.++ |+.++. .....++..+..+.......|.|++++
T Consensus 8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~ 87 (118)
T d1ct8b1 8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT 87 (118)
T ss_dssp CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence 34578889999999999986555556888875 332211 111122334444444445679999999
Q ss_pred ecCCEEEEEEcc
Q psy13371 159 LKDSGKYSCSPS 170 (212)
Q Consensus 159 ~~d~g~y~C~~~ 170 (212)
.+|++.|.|...
T Consensus 88 ~eDtAvYYCAr~ 99 (118)
T d1ct8b1 88 TEDSAIYYCARY 99 (118)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCcceEEEEeee
Confidence 999999999653
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.33 E-value=2.7e-06 Score=51.26 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=51.7
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE-------------eeCCCCceeEEeecCceEEEEEEEee
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.+....+++|+.+.|.|.+.+.......+.|+++ |+.++ +.....++..+..+....+..|.|++
T Consensus 6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~ 85 (124)
T d2b1hh1 6 QSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSS 85 (124)
T ss_dssp ECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESS
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeec
Confidence 3344578899999999999976543334788874 22221 11112344445544444556799999
Q ss_pred eeecCCEEEEEEc
Q psy13371 157 AELKDSGKYSCSP 169 (212)
Q Consensus 157 ~~~~d~g~y~C~~ 169 (212)
+..+|++.|.|..
T Consensus 86 L~~eDTA~YYCAR 98 (124)
T d2b1hh1 86 LKPSDTALYYCAR 98 (124)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cccccceEEEEee
Confidence 9999999999954
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.32 E-value=4.3e-06 Score=50.22 Aligned_cols=69 Identities=22% Similarity=0.205 Sum_probs=45.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eee-cceee----ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTV-GSYTY----TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~-~~~~~----~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+ ....|.|+|..+... ... ..... ...+|+.... .......|+|.+++++|+|.|.|....
T Consensus 17 vtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 94 (112)
T d1kgce1 17 VALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAER-PEGSVSTLKIQRTQQEDSAVYLCASSL 94 (112)
T ss_dssp EEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC-TTSSCEEEEESSCCGGGCEEEEEEEES
T ss_pred EEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeEC-CcCCEEEEEECCCCcCCCEEEEEeeeC
Confidence 468998654 456899999764221 111 11111 1235666653 445568899999999999999998754
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.32 E-value=1.2e-06 Score=52.95 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=49.9
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeCCCCc------eeEEeecCceEEEEEEEeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDSSRGG------VSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~~~~~------~~~~~~~~~~~~~~l~i~~~~ 158 (212)
.+.|..+.+.+|+.++|.|........ .+.|++.. + .+........ +.............|.|.++.
T Consensus 4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~--~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1j8hd1 4 TQLGSHVSVSEGALVLLRCNYSSSVPP--YLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAH 81 (115)
T ss_dssp ECSCSEEEEETTSCEEECCEEECSSCC--EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCC
T ss_pred EcCCCeEEEcCCCCEEEEEEeCCCCce--eEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccc
Confidence 345667889999999999998654333 48999853 2 1211111111 111111111122359999999
Q ss_pred ecCCEEEEEEcccC
Q psy13371 159 LKDSGKYSCSPSNA 172 (212)
Q Consensus 159 ~~d~g~y~C~~~n~ 172 (212)
.+|+|.|.|.+...
T Consensus 82 ~~Dsa~YyCa~~~~ 95 (115)
T d1j8hd1 82 MSDAAEYFCAVSES 95 (115)
T ss_dssp GGGCEEEEEEEESS
T ss_pred ccCCccceeeecCC
Confidence 99999999988653
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.32 E-value=2.6e-06 Score=51.28 Aligned_cols=70 Identities=24% Similarity=0.267 Sum_probs=43.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++. ...+.|+|...... ..........................|+|.+++.+|+|.|.|.+..
T Consensus 19 vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 92 (113)
T d1h5ba_ 19 SALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEA 92 (113)
T ss_dssp EEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEEEecC
Confidence 4689998764 45799999653221 1111111111222222222344667899999999999999998764
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=3.5e-07 Score=54.78 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=49.5
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEE---eecCce-EEEEEEEeeeeecCCEEEE
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI---TEKGEV-TTSYLLIQQAELKDSGKYS 166 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~l~i~~~~~~d~g~y~ 166 (212)
..|....+..++.++|.|.+.+..+..+.|.|.++|+.+............ ..++.. ..+.|.|..-.......|+
T Consensus 10 ~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~yt 89 (108)
T d1ow0a2 10 LPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFS 89 (108)
T ss_dssp ECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEE
T ss_pred ECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEE
Confidence 334444556788999999999876566789999999876422111000011 112222 3455666544434456999
Q ss_pred EEcccC
Q psy13371 167 CSPSNA 172 (212)
Q Consensus 167 C~~~n~ 172 (212)
|.+.++
T Consensus 90 C~V~H~ 95 (108)
T d1ow0a2 90 CMVGHE 95 (108)
T ss_dssp EEEECT
T ss_pred EEEEeC
Confidence 999986
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.32 E-value=1.3e-06 Score=52.63 Aligned_cols=75 Identities=17% Similarity=0.315 Sum_probs=49.7
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE-------------eeCCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..+.+|+.+.|.|.+.+..-....+.|+++ |+.++ +.....++..+..+....+..|.|++++.+
T Consensus 10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e 89 (122)
T d1bz7b1 10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE 89 (122)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence 467889999999999876544445889885 22221 111112334444444344567999999999
Q ss_pred CCEEEEEEcc
Q psy13371 161 DSGKYSCSPS 170 (212)
Q Consensus 161 d~g~y~C~~~ 170 (212)
|++.|.|...
T Consensus 90 DTAvYYCAr~ 99 (122)
T d1bz7b1 90 DTAIYYCTRG 99 (122)
T ss_dssp GCEEEEEEEE
T ss_pred CceEEEeecC
Confidence 9999999754
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.32 E-value=2.6e-06 Score=51.45 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=52.1
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE-------------eeCCCCceeEEeecCceEEEEEEEee
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.+....+++|+.+.|.|.+.+.......+.|+++ ++.++ +.....++..+..+....+..|.|++
T Consensus 6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~ 85 (127)
T d1n0xh1 6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 85 (127)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEc
Confidence 3445678899999999999976544445788875 22221 11112234445444444556799999
Q ss_pred eeecCCEEEEEEc
Q psy13371 157 AELKDSGKYSCSP 169 (212)
Q Consensus 157 ~~~~d~g~y~C~~ 169 (212)
++.+|++.|.|.-
T Consensus 86 L~~eDtAvYYCAR 98 (127)
T d1n0xh1 86 LRSADTAVYYCAR 98 (127)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCCceEEEEEe
Confidence 9999999999963
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=98.32 E-value=3.4e-06 Score=50.43 Aligned_cols=75 Identities=20% Similarity=0.385 Sum_probs=50.9
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEe---------------eCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISY---------------DSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
..+.+|+.++|.|.+.+.......+.|+++ |+.++. .....++..+..+.......|.|++++
T Consensus 10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~ 89 (120)
T d1dlfh_ 10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR 89 (120)
T ss_dssp CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence 467889999999999877555556899875 332221 111123444444443444579999999
Q ss_pred ecCCEEEEEEcc
Q psy13371 159 LKDSGKYSCSPS 170 (212)
Q Consensus 159 ~~d~g~y~C~~~ 170 (212)
.+|++.|.|...
T Consensus 90 ~eDtAvYYCA~~ 101 (120)
T d1dlfh_ 90 AEDTGIYYCTGI 101 (120)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCCceEEEeeEe
Confidence 999999999654
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=9.8e-07 Score=53.68 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=43.8
Q ss_pred CeeEeeeCCCCCc---eEEEEeeCcceeeeecceeeec------CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPT---RVSWIRHRDIHILTVGSYTYTS------DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~---~v~W~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.+...... .+.|+|.........-...+.. ..++....+.......|+|.+++.+|+|.|.|.+..
T Consensus 17 vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 17 ASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVEL 96 (118)
T ss_dssp EEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCEEEEEeEec
Confidence 3689998765433 6999998753322111001101 112222223455678999999999999999998764
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=98.31 E-value=1.3e-06 Score=51.03 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=46.3
Q ss_pred eeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceE-EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 98 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...++.++|.|.+.++.++.+.+.|.++|+.+...... .......++... .+.|.+ ..++...|+|.+.++
T Consensus 14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~-~~~~~~~dgty~~~s~L~v---~~~~~~~ytC~V~H~ 85 (98)
T d1hdmb1 14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAH-KTAQPNGDWTYQTLSHLAL---TPSYGDTYTCVVEHI 85 (98)
T ss_dssp CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSB-CCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECT
T ss_pred ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEe-CceEECCCCCEEEEEEeEc---CCCCCCEEEEEEEeC
Confidence 34567889999999987778889999999876422111 112333344332 334544 344556899999987
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.31 E-value=3.1e-06 Score=51.13 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=51.3
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE-------------eeCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
....+++|+.+.|.|.+.+.......+.|.++ ++.++ +.....++..+..+.......|.|++++
T Consensus 8 g~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~ 87 (127)
T d2fx7h1 8 GAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLR 87 (127)
T ss_dssp CCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccC
Confidence 34567889999999999876545545888875 22221 1111123444444444445679999999
Q ss_pred ecCCEEEEEEcc
Q psy13371 159 LKDSGKYSCSPS 170 (212)
Q Consensus 159 ~~d~g~y~C~~~ 170 (212)
.+|++.|.|...
T Consensus 88 ~eDTavYYCAR~ 99 (127)
T d2fx7h1 88 PEDTAVYYCARE 99 (127)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccceEEEEeec
Confidence 999999999754
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=98.31 E-value=3.7e-06 Score=51.08 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=56.8
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE-------------eeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
...+.+|+.+.|.|.+.+.......+.|+++ |+.++ +.....++..+..+....+..|.|++++.
T Consensus 9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~ 88 (135)
T d1ieha_ 9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS 88 (135)
T ss_dssp CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence 3467899999999999876544445889875 22221 11112234444444444445799999999
Q ss_pred cCCEEEEEEcccC-----CeeEEEEEEe
Q psy13371 160 KDSGKYSCSPSNA-----DVASVYVHVL 182 (212)
Q Consensus 160 ~d~g~y~C~~~n~-----~~~~~~~~v~ 182 (212)
+|++.|.|..... -+....++|.
T Consensus 89 eDTAvYYCAr~~~~~~d~WGqGT~VTVs 116 (135)
T d1ieha_ 89 EDTAVYYCAKYSGGALDAWGQGTQVTVS 116 (135)
T ss_dssp SSCEEEEEEEBSSSSBCCCSCCEEEEEC
T ss_pred ccceeeEEEEecCCccceeCCCEEEEEE
Confidence 9999999976543 2444455553
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=98.31 E-value=1.7e-06 Score=52.00 Aligned_cols=77 Identities=21% Similarity=0.406 Sum_probs=51.7
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE---------------eeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS---------------YDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
...+.+|+.+.|.|.+.+.......+.|+++. +.++ +..+..++..+..+....+..|.|+++
T Consensus 9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL 88 (122)
T d1q9rb1 9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL 88 (122)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeee
Confidence 34688899999999998765444458898752 2211 111222344444444444567999999
Q ss_pred eecCCEEEEEEccc
Q psy13371 158 ELKDSGKYSCSPSN 171 (212)
Q Consensus 158 ~~~d~g~y~C~~~n 171 (212)
+.+|++.|.|....
T Consensus 89 ~~eDTAvYYCar~~ 102 (122)
T d1q9rb1 89 RAEDSATYYCARDH 102 (122)
T ss_dssp CGGGCEEEEEEECC
T ss_pred ccCcceEEEEEecC
Confidence 99999999998644
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.31 E-value=3.5e-06 Score=50.89 Aligned_cols=81 Identities=21% Similarity=0.412 Sum_probs=49.7
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE----EEeeCCCC-----ceeEEeecCceEEEEEEEeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV----ISYDSSRG-----GVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~----~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
.+.|..+.+.+|+.++|.|...... ....+.|++.. +. +....... .+.....+.......|.|++++
T Consensus 3 tQ~p~~v~~~~G~~Vtl~C~~~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1fo0a_ 3 TQTQTSISVMEKTTVTMDCVYETQD-SSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ 81 (115)
T ss_dssp ECCCCEEEEETTCCEEECCEECCCC-SSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred EccCCEEEEcCCCCEEEEEEEcCCC-CCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence 3456778899999999999875332 22248899853 21 11111110 1122222222234569999999
Q ss_pred ecCCEEEEEEccc
Q psy13371 159 LKDSGKYSCSPSN 171 (212)
Q Consensus 159 ~~d~g~y~C~~~n 171 (212)
.+|+|.|.|.+..
T Consensus 82 ~~Dsa~YyCa~~~ 94 (115)
T d1fo0a_ 82 IEDSAVYFCAMRG 94 (115)
T ss_dssp GGGCEEEEEEEEC
T ss_pred ccccccccceeec
Confidence 9999999998753
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.30 E-value=7.6e-07 Score=53.32 Aligned_cols=77 Identities=16% Similarity=0.389 Sum_probs=50.9
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEe----e--CC---------CCceeEEeecCceEEEEEEEee
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISY----D--SS---------RGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~----~--~~---------~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
....+.+|+.+.|.|.+.+.......+.|.++ |+.++. . .. ..++..+..+....+..|.|++
T Consensus 8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~ 87 (121)
T d1nfdf1 8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNR 87 (121)
T ss_dssp CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEES
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecc
Confidence 34578899999999999987555555789885 333221 0 01 1123333334334456799999
Q ss_pred eeecCCEEEEEEcc
Q psy13371 157 AELKDSGKYSCSPS 170 (212)
Q Consensus 157 ~~~~d~g~y~C~~~ 170 (212)
++.+|++.|.|...
T Consensus 88 L~~eDTAvYYCAr~ 101 (121)
T d1nfdf1 88 LRVDDTAIYYCTRA 101 (121)
T ss_dssp CCGGGCEECEEEEE
T ss_pred cCCCcceEEEEecc
Confidence 99999999999653
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.30 E-value=2.6e-06 Score=51.71 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=52.1
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE-------------eeCCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.+.|.|.+.+..-....+.|+++ ++.++ +.....++..+..+.......|.|+++
T Consensus 6 sg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L 85 (130)
T d1rhhb1 6 SGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNL 85 (130)
T ss_dssp CCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeecc
Confidence 344568899999999999876545556889875 22221 111112344444444444567999999
Q ss_pred eecCCEEEEEEcc
Q psy13371 158 ELKDSGKYSCSPS 170 (212)
Q Consensus 158 ~~~d~g~y~C~~~ 170 (212)
+.+|++.|.|...
T Consensus 86 ~~eDtAvYyCAr~ 98 (130)
T d1rhhb1 86 RSDDTAVYYCARD 98 (130)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCCcEEEEEEee
Confidence 9999999999754
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.30 E-value=2.3e-06 Score=51.40 Aligned_cols=75 Identities=19% Similarity=0.327 Sum_probs=48.7
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE----eeC---------CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS----YDS---------SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~----~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..+.+|+.++|.|.+.+.......+.|+++ |+.++ ... ...++..+..+.......|.|+++..+
T Consensus 10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e 89 (119)
T d1qnzh_ 10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD 89 (119)
T ss_dssp CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence 467889999999999865433335899985 32211 111 112334444433334456999999999
Q ss_pred CCEEEEEEcc
Q psy13371 161 DSGKYSCSPS 170 (212)
Q Consensus 161 d~g~y~C~~~ 170 (212)
|++.|.|...
T Consensus 90 DsAvYYCA~~ 99 (119)
T d1qnzh_ 90 DSAVYYCAIH 99 (119)
T ss_dssp GCEEEEEEEC
T ss_pred ceeEEEEEEe
Confidence 9999999654
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=98.30 E-value=3.9e-06 Score=50.47 Aligned_cols=81 Identities=22% Similarity=0.408 Sum_probs=49.5
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeC----CCCCceEEEEEcC--e---EEEe-----eCCCCceeEEeecCceEEEEEEEe
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYS----PEPPAYIFWYHHD--E---VISY-----DSSRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~----~~p~~~v~W~~~~--~---~~~~-----~~~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
.+.|..+.+.+|+.++|.|...+. ......+.|++.. + .+.. ......+......+ ....|.|+
T Consensus 5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~--~~~~L~I~ 82 (113)
T d1q9ra1 5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSG--TDFTLTIT 82 (113)
T ss_dssp EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET--TEEEEEES
T ss_pred EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCC--CeEeEEec
Confidence 345777889999999999986432 1111238999853 2 1111 11111222222222 23469999
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
+++.+|+|.|.|.+...
T Consensus 83 ~l~~~Dsa~YyCA~~~~ 99 (113)
T d1q9ra1 83 SVQAEDLAVYYCKQSYN 99 (113)
T ss_dssp SCCGGGCEEEEEEECSS
T ss_pred ccccCCCeEEEecccCC
Confidence 99999999999987643
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.30 E-value=2.8e-06 Score=51.17 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=47.7
Q ss_pred ceeeeCCCcEEEEeEEeeCCC--CCceEEEEEcC--eEEE---e-e--------CCCCceeEEeecCceEEEEEEEeeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPE--PPAYIFWYHHD--EVIS---Y-D--------SSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~--p~~~v~W~~~~--~~~~---~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
...+.+|+.++|.|.+.+... ....+.|+++. +.++ . . ....++.....+.......|.|++++
T Consensus 9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~ 88 (120)
T d2agjh1 9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD 88 (120)
T ss_dssp CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence 345788999999999876432 22357899852 2211 0 0 01122333333333334679999999
Q ss_pred ecCCEEEEEEcc
Q psy13371 159 LKDSGKYSCSPS 170 (212)
Q Consensus 159 ~~d~g~y~C~~~ 170 (212)
.+|++.|.|...
T Consensus 89 ~eDsAvYyCAr~ 100 (120)
T d2agjh1 89 PVDTATYYCART 100 (120)
T ss_dssp GGGCEEEEEEEE
T ss_pred eccceEEeeEec
Confidence 999999999643
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.29 E-value=1.5e-06 Score=52.26 Aligned_cols=78 Identities=22% Similarity=0.394 Sum_probs=49.3
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE---EEeeCC-----CCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV---ISYDSS-----RGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~---~~~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..|..+.+.+|+.++|.|...+... ...+.|++.. +. +..... ...+.....+ .....|.|.++..+
T Consensus 3 ~qP~~~~~~~G~svtl~C~~s~~~~-~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~ 79 (112)
T d1kgcd1 3 TQPNSMESNEEEPVHLPCNHSTISG-TDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAED--RKSSTLILHRATLR 79 (112)
T ss_dssp ECCSEEEEETTSCEEEEEEESCCCT-TCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTT--SSEEEEEESSCCGG
T ss_pred ECCCEEEECCCCCEEEEEEEeCCCc-cccEEEEEECCCCCcceeeeecceeccccccceeeccc--CCeeEEEEeecccc
Confidence 4566788999999999998754322 2238999853 21 111111 1112222222 23456999999999
Q ss_pred CCEEEEEEccc
Q psy13371 161 DSGKYSCSPSN 171 (212)
Q Consensus 161 d~g~y~C~~~n 171 (212)
|+|.|.|.+..
T Consensus 80 Dsa~YyCa~~~ 90 (112)
T d1kgcd1 80 DAAVYYCILPL 90 (112)
T ss_dssp GCEEEEEECCC
T ss_pred cceeEeeeEec
Confidence 99999998753
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.29 E-value=3.7e-06 Score=50.35 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=50.3
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeCCCCc-----eeEEeecCceEEEEEEEeeee
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDSSRGG-----VSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~ 158 (212)
+.+.|..+.+.+|+.++|.|........ .+.|++.. + .+........ +.....+.......|.|+++.
T Consensus 3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~--~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~ 80 (110)
T d1ac6a_ 3 VTQTEGQVALSEEDFLTIHCNYSASGYP--ALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQ 80 (110)
T ss_dssp EEECCSEEEEETTEEEEECEEEECSSCC--EEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEEC
T ss_pred eEeCCCeEEECCCCCEEEEEEecCCCCc--ceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcC
Confidence 3456777889999999999987643223 48999853 1 1211111111 111111111123459999999
Q ss_pred ecCCEEEEEEcccC
Q psy13371 159 LKDSGKYSCSPSNA 172 (212)
Q Consensus 159 ~~d~g~y~C~~~n~ 172 (212)
.+|+|.|.|.+...
T Consensus 81 ~~Dsa~YyCA~~~~ 94 (110)
T d1ac6a_ 81 ESDSAVYYCALSGG 94 (110)
T ss_dssp GGGCEEEEEEEEET
T ss_pred cCCCcccceeecCC
Confidence 99999999987643
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.29 E-value=2.8e-06 Score=51.17 Aligned_cols=76 Identities=16% Similarity=0.320 Sum_probs=51.4
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE-------------eeCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
...+.+|+.+.|.|.+.+.......+.|+++- +.++ +.....++..+..+.......|.|++++.
T Consensus 9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~ 88 (125)
T d1op3h1 9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV 88 (125)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence 35688999999999998764444458888752 2221 11222344555544444556799999999
Q ss_pred cCCEEEEEEcc
Q psy13371 160 KDSGKYSCSPS 170 (212)
Q Consensus 160 ~d~g~y~C~~~ 170 (212)
+|++.|.|...
T Consensus 89 eDTAvYYCAr~ 99 (125)
T d1op3h1 89 EDTAIYYCARK 99 (125)
T ss_dssp GGCEEEEEEEE
T ss_pred ccceeEeEeec
Confidence 99999999754
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.29 E-value=5.4e-06 Score=49.81 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=50.1
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCC---CCCceEEEEEcC--e---EEEee-----CCCCceeEEeecCceEEEEEEEee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSP---EPPAYIFWYHHD--E---VISYD-----SSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~---~p~~~v~W~~~~--~---~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.+.|....+.+|+.++|.|...+.. .....+.|++.. + .+... .....+......+ ....|.|++
T Consensus 6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~--~~~~L~I~~ 83 (113)
T d1n4xl_ 6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSG--TDFTLKISR 83 (113)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECS--SEEEEEESS
T ss_pred eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccC--CcccCccCC
Confidence 4556778899999999999975321 122348999853 1 11111 1111122222222 335799999
Q ss_pred eeecCCEEEEEEcccC
Q psy13371 157 AELKDSGKYSCSPSNA 172 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n~ 172 (212)
++.+|+|.|.|...+.
T Consensus 84 ~~~~DsavYyCa~~~~ 99 (113)
T d1n4xl_ 84 VEAEDLGIYYCFQGSH 99 (113)
T ss_dssp CCGGGCEEEEEEECSS
T ss_pred CCcccCEEEEEEECCC
Confidence 9999999999976543
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.29 E-value=1.8e-06 Score=51.93 Aligned_cols=77 Identities=17% Similarity=0.335 Sum_probs=50.2
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEEe----e---------CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISY----D---------SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~~----~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
...+.+|+.+.|.|.+.+..-....+.|+++. +.++. . ....++..+..+.......|.|++++.
T Consensus 9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~ 88 (123)
T d1mqkh_ 9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS 88 (123)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence 34678999999999998764444457898752 22210 1 111233444444334445699999999
Q ss_pred cCCEEEEEEccc
Q psy13371 160 KDSGKYSCSPSN 171 (212)
Q Consensus 160 ~d~g~y~C~~~n 171 (212)
+|++.|.|....
T Consensus 89 eDtAvYYCAr~~ 100 (123)
T d1mqkh_ 89 EDTAMYYCVRHE 100 (123)
T ss_dssp GGCEEEEEEEEE
T ss_pred CcccceeEEecC
Confidence 999999996543
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.29 E-value=2.9e-06 Score=51.67 Aligned_cols=77 Identities=17% Similarity=0.324 Sum_probs=52.6
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE-------------eeCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
....+.+|+.+.|.|.+.+.......+.|.++ ++.++ +.....++..+..+....+..|.+++++
T Consensus 7 G~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~ 86 (133)
T d1rzfh1 7 GAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLR 86 (133)
T ss_dssp CCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCC
Confidence 34568899999999999876555556788874 22221 1111233445555554455679999999
Q ss_pred ecCCEEEEEEcc
Q psy13371 159 LKDSGKYSCSPS 170 (212)
Q Consensus 159 ~~d~g~y~C~~~ 170 (212)
.+|++.|.|...
T Consensus 87 ~eDtA~YYCAr~ 98 (133)
T d1rzfh1 87 SDDTAVYYCASN 98 (133)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCCCEEEEeeec
Confidence 999999999654
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=4.3e-07 Score=54.02 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=45.7
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..++.++|.|.+.+..+..+.+.|.++|..+..............++. ...+.|.+..-.......|+|.+.++
T Consensus 17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~ 91 (105)
T d1fp5a2 17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHE 91 (105)
T ss_dssp SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECT
T ss_pred hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEEC
Confidence 346679999999987556678999999987632110000112223332 23456776544444555899999985
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.28 E-value=9.7e-07 Score=52.78 Aligned_cols=69 Identities=23% Similarity=0.324 Sum_probs=46.2
Q ss_pred CeeEeeeCCC-CCceEEEEeeCcceeeee---c--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL-LPTRVSWIRHRDIHILTV---G--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~-p~~~v~W~~~~~~~~~~~---~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+. ....+.|+|..+...... . ........|+.... ..+...|+|.+++++|+|.|.|....
T Consensus 19 v~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~~ 93 (108)
T d2fx7l1 19 ATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSG--SGTDFTLTISRLEPEDFAVYYCQQYG 93 (108)
T ss_dssp EEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred EEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeec--CCCEEEEEehHheecccEEEeeecCC
Confidence 3689998765 456799999764321110 1 11111235777653 44678999999999999999998764
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.28 E-value=1.8e-06 Score=51.49 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=47.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----ecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----VGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.....+.|+|..+..... ... ......+|+.... ......|.|.+++.+|+|.|.|....
T Consensus 18 vtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~DsavYyCA~~~ 91 (109)
T d1w72l1 18 ARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSN--SGNMATLTISRVEAGDEADYYCQVWD 91 (109)
T ss_dssp EEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeec--CCCccceEEeeeccCCCEEEEEEecC
Confidence 368999887767789999876422211 111 0111135776653 45678999999999999999998754
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.28 E-value=2.7e-06 Score=51.08 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=51.5
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE----ee---------CCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS----YD---------SSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~----~~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.+.|.|.+.+.......+.|.++ |+.++ .. ....++..+..+....+..|.|+++
T Consensus 7 sG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL 86 (124)
T d1yedb1 7 SGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSL 86 (124)
T ss_dssp CCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESC
T ss_pred eCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEeccccc
Confidence 344568899999999999876544445889875 22221 11 1112344444444445567999999
Q ss_pred eecCCEEEEEEcc
Q psy13371 158 ELKDSGKYSCSPS 170 (212)
Q Consensus 158 ~~~d~g~y~C~~~ 170 (212)
+.+|++.|.|...
T Consensus 87 ~~eDTAvYYCAR~ 99 (124)
T d1yedb1 87 KSEDSAVYFCTRW 99 (124)
T ss_dssp CGGGCEEEEEEEC
T ss_pred CCCcceEEEeccc
Confidence 9999999999753
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.28 E-value=7.4e-08 Score=56.47 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=46.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceee----ee-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHIL----TV-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~----~~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++ ....+.|+|..+.... .. ........+|+.+..+...+...|+|.+++.+|+|.|.|....
T Consensus 11 vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~ 85 (96)
T d1ymmd1 11 ATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDT 85 (96)
T ss_dssp CCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEEE
T ss_pred EEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeEeEec
Confidence 468998865 4568999986532211 11 1111123467777654455667899999999999999997654
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.27 E-value=2.7e-06 Score=51.49 Aligned_cols=78 Identities=17% Similarity=0.399 Sum_probs=50.8
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEEe----e---------CCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVISY----D---------SSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~~----~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+++|+.++|.|.+.+.......+.|+++ ++.++. . ....++..+..+.......|.|+++
T Consensus 7 sg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL 86 (125)
T d1rihh1 7 SGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSL 86 (125)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeecc
Confidence 344578899999999999876444445888875 322211 1 1112233444444344567999999
Q ss_pred eecCCEEEEEEcc
Q psy13371 158 ELKDSGKYSCSPS 170 (212)
Q Consensus 158 ~~~d~g~y~C~~~ 170 (212)
+.+|++.|.|...
T Consensus 87 ~~eDtAvYYCAR~ 99 (125)
T d1rihh1 87 TSEDSAVYYCARE 99 (125)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CcccceEEEEeee
Confidence 9999999999754
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.27 E-value=5.6e-06 Score=49.76 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=47.3
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEE---Eee--------CCCCceeEEeecCceEEEEEEEeee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVI---SYD--------SSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~---~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+.|....+.+|+.++|.|...+. ...+.|+++ ++.. ... .....+....... .....|.|.++
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~~~---~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~ 79 (113)
T d2ntsp1 4 QTPRYLIKTRGQQVTLSCSPISG---HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFS-NSRSEMNVSTL 79 (113)
T ss_dssp EECSEEEEETTCCEEEEEECSTT---CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECT-TSCEEEEECSC
T ss_pred eCCCeEEECCCCCEEEEEEECCC---CCEEEEEEeecccceEeeeeecccccccccccccceeeccCc-CCeeEEEECCC
Confidence 44666788999999999986433 234899984 2221 110 0111111111111 12346999999
Q ss_pred eecCCEEEEEEccc
Q psy13371 158 ELKDSGKYSCSPSN 171 (212)
Q Consensus 158 ~~~d~g~y~C~~~n 171 (212)
..+|+|.|.|.+..
T Consensus 80 ~~~Dsa~YyCA~~~ 93 (113)
T d2ntsp1 80 ELGDSALYLCASSL 93 (113)
T ss_dssp CGGGCEEEEEEEES
T ss_pred CcccceeeeeeeeC
Confidence 99999999998753
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.27 E-value=1.9e-06 Score=51.72 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=45.4
Q ss_pred CeeEeeeCCC----CCceEEEEeeCcceee----eecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL----LPTRVSWIRHRDIHIL----TVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~----p~~~v~W~~~~~~~~~----~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++. ....+.|+|..+.... .... .......||.... ......|+|.+++++|+|.|.|....
T Consensus 19 vtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~--~~~~~~L~I~~~~~~DsA~YyCa~~~ 96 (111)
T d2gsia1 19 ATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSG--SGTDFTLNIHPVEEEDAATYYCSHIR 96 (111)
T ss_dssp EEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEec--CCCchhcccccccccCCceEEEEECC
Confidence 4699987653 2345999997642221 1111 1111246887763 45678999999999999999997654
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.27 E-value=4.7e-06 Score=50.41 Aligned_cols=76 Identities=20% Similarity=0.385 Sum_probs=50.4
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE----ee---------CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS----YD---------SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~----~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
...+.+|+.+.|.|.+.+.......+.|+++. +.++ .. ....++..+..+.......|.|++++.
T Consensus 8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~ 87 (126)
T d1rjca1 8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP 87 (126)
T ss_dssp CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence 34678999999999998766566568998853 2221 11 111234444444444556799999999
Q ss_pred cCCEEEEEEcc
Q psy13371 160 KDSGKYSCSPS 170 (212)
Q Consensus 160 ~d~g~y~C~~~ 170 (212)
+|++.|.|...
T Consensus 88 eDTAvYYCAr~ 98 (126)
T d1rjca1 88 EDTAMYYCAAD 98 (126)
T ss_dssp GGCEEEEEEEC
T ss_pred ccCceeEEEee
Confidence 99999999754
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.27 E-value=2.4e-06 Score=51.16 Aligned_cols=75 Identities=21% Similarity=0.389 Sum_probs=50.7
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE----eeCC---------CCceeEEeecCceEEEEEEEeeeeec
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS----YDSS---------RGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~----~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..+.+|+.+.|.|.+.+.......+.|.++. +.++ .... ..++..+..+.......|.|++++.+
T Consensus 10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e 89 (121)
T d2p49b1 10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE 89 (121)
T ss_dssp EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence 4678999999999998765555568898853 2211 1111 12234444444444567999999999
Q ss_pred CCEEEEEEcc
Q psy13371 161 DSGKYSCSPS 170 (212)
Q Consensus 161 d~g~y~C~~~ 170 (212)
|++.|.|...
T Consensus 90 DtAvYYCAr~ 99 (121)
T d2p49b1 90 DTATYYCAAG 99 (121)
T ss_dssp GCEEEEEEES
T ss_pred ceeEEeeecc
Confidence 9999999764
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.27 E-value=3.2e-06 Score=49.43 Aligned_cols=71 Identities=17% Similarity=0.390 Sum_probs=43.0
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE-------------eeCCCCceeEEeecCceEEEEEEEeeeeecCCEE
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS-------------YDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGK 164 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 164 (212)
+|+.++|.|.+.+..-....+.|+++. +.++ +.....++..+..+.......|.|++++.+|++.
T Consensus 1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv 80 (103)
T d1oari_ 1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV 80 (103)
T ss_dssp CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence 588999999998765455568898753 2221 1122234445555444455679999999999999
Q ss_pred EEEEcc
Q psy13371 165 YSCSPS 170 (212)
Q Consensus 165 y~C~~~ 170 (212)
|.|...
T Consensus 81 YYCAr~ 86 (103)
T d1oari_ 81 YYCARM 86 (103)
T ss_dssp EEEEEE
T ss_pred EEeEEE
Confidence 999753
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.27 E-value=6.4e-06 Score=49.39 Aligned_cols=78 Identities=22% Similarity=0.444 Sum_probs=48.6
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCC---CCCceEEEEEcC--eE---EEeeC-----CCCceeEEeecCceEEEEEEEeee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSP---EPPAYIFWYHHD--EV---ISYDS-----SRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~---~p~~~v~W~~~~--~~---~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+.|+.+.+.+|+.++|.|...+.. .....+.|++.. +. +.... ....+......+ ....|.|+++
T Consensus 6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~--~~~~L~Is~~ 83 (112)
T d1mjul1 6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSG--TAFTLRISRV 83 (112)
T ss_dssp CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECS--SEEEEEESSC
T ss_pred ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCC--CEEEEEECCc
Confidence 456678899999999999875431 122348999753 21 11111 111122222222 3456999999
Q ss_pred eecCCEEEEEEcc
Q psy13371 158 ELKDSGKYSCSPS 170 (212)
Q Consensus 158 ~~~d~g~y~C~~~ 170 (212)
+.+|++.|.|...
T Consensus 84 ~~~DsAvYyCa~~ 96 (112)
T d1mjul1 84 EAEDVGVYYCLQH 96 (112)
T ss_dssp CGGGCEEEEEEEC
T ss_pred cccCCceEEEEeC
Confidence 9999999999644
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.26 E-value=1.3e-06 Score=52.46 Aligned_cols=69 Identities=20% Similarity=0.158 Sum_probs=46.5
Q ss_pred CeeEeeeCCCC--CceEEEEeeCcceeeee-----cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL--PTRVSWIRHRDIHILTV-----GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v~W~~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.. ...+.|+|..+...... ........+|+.... .....+|+|.+++.+|+|.|.|....
T Consensus 18 vtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~~Dsa~YyCA~~~ 93 (111)
T d1rzfl1 18 VTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK--SGTSATLGITGLQTGDEADYYCGTWD 93 (111)
T ss_dssp EEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEEEE
T ss_pred EEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC--CCCEeeeEEeeeccccCcceEEeecC
Confidence 46899987653 46799998764222211 111112236777764 34578999999999999999998754
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=1e-06 Score=53.35 Aligned_cols=82 Identities=17% Similarity=0.271 Sum_probs=48.4
Q ss_pred eCCCceeeeCCCcEEEEeEEeeC----CCCCceEEEEEcCe----EEEeeC-------CCCceeEEeecCceEEEEEEEe
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYS----PEPPAYIFWYHHDE----VISYDS-------SRGGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~----~~p~~~v~W~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~~l~i~ 155 (212)
..|..+.+.+|+.+.|.|..... ......+.|++... .+.... ....+.....+......+|.|.
T Consensus 5 ~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~ 84 (118)
T d1qfoa_ 5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLK 84 (118)
T ss_dssp ECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred ECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEEC
Confidence 34667789999999999998521 11233456776432 111111 1112222322211123459999
Q ss_pred eeeecCCEEEEEEcccC
Q psy13371 156 QAELKDSGKYSCSPSNA 172 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n~ 172 (212)
+++.+|+|.|.|.+...
T Consensus 85 ~v~~~DsG~Y~C~v~~~ 101 (118)
T d1qfoa_ 85 DLKPEDSGTYNFRFEIS 101 (118)
T ss_dssp SCCGGGCEEEEEEEECC
T ss_pred CCChhHCEEEEEEEEeC
Confidence 99999999999998754
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=98.25 E-value=1.2e-06 Score=51.47 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=44.1
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..|+..+|.|.+.+..+..+.+.|.++|+.+...... .......++.. ..+.|.+. ..+...|+|.+.++
T Consensus 17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~-~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~ 87 (101)
T d1fnga1 17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSE-TVFLPRDDHLFRKFHYLTFL---PSTDDFYDCEVDHW 87 (101)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEE-CCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECT
T ss_pred cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEe-CeEEECCCCcEEEEEEeEEc---CCCCCEEEEEEEEC
Confidence 4567789999999986677789999999877321111 11122233322 23445553 34455899999987
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.25 E-value=2e-06 Score=51.27 Aligned_cols=77 Identities=25% Similarity=0.417 Sum_probs=48.6
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--e---EEEeeCC-----CCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--E---VISYDSS-----RGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~---~~~~~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
.+|..+.+.+|+.++|.|......... +.|++.. + .+..... ...+.....++ ....|.|.+++.+
T Consensus 4 tQP~s~~~~~G~svtl~C~~~~~~~~~--i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~--~~~~L~I~~l~~~ 79 (108)
T d1nfde1 4 IQPSSASVTVGETVKITCSGDQLPKNF--AYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG--TTATLTISGAQPE 79 (108)
T ss_dssp ECCSEEEEETTSCCCEEEEETTGGGSC--CEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET--TEEEEEETTCCGG
T ss_pred ECCCeeEECCCCCEEEEEECCCCCCcc--EEEEecccccceeeeccccccccccccceeeecCCC--CEeeeeEcCcccc
Confidence 346678889999999999874332233 8999853 2 1211111 11122222222 2356999999999
Q ss_pred CCEEEEEEccc
Q psy13371 161 DSGKYSCSPSN 171 (212)
Q Consensus 161 d~g~y~C~~~n 171 (212)
|+|.|.|.+..
T Consensus 80 Dsa~YyCA~~~ 90 (108)
T d1nfde1 80 DEAAYYCLSSY 90 (108)
T ss_dssp GCSEEEEEEEE
T ss_pred CCceEEEEeec
Confidence 99999998753
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=98.25 E-value=1.3e-06 Score=51.32 Aligned_cols=73 Identities=22% Similarity=0.426 Sum_probs=46.7
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEE------------EeeCCCCceeEEeecCceEEEEEEEeeeeecCC
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVI------------SYDSSRGGVSVITEKGEVTTSYLLIQQAELKDS 162 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 162 (212)
.+++|+.++|.|.+.+.......+.|+++. +.+ .+.....++..+..+.......|.|++++.+|+
T Consensus 4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt 83 (107)
T d1sjva_ 4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT 83 (107)
T ss_dssp CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence 467899999999998654344457898863 211 111222334445544444456799999999999
Q ss_pred EEEEEEc
Q psy13371 163 GKYSCSP 169 (212)
Q Consensus 163 g~y~C~~ 169 (212)
+.|.|..
T Consensus 84 AvYyCA~ 90 (107)
T d1sjva_ 84 AVYYCYT 90 (107)
T ss_dssp SEEEEEE
T ss_pred eeeeEec
Confidence 9999964
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=98.24 E-value=1.5e-05 Score=46.89 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=45.3
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..|+..+|.|.+.+..++.+.+.|.++|.... ...........++.. ..+.|.+ ..++...|+|.+.++.
T Consensus 16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~--~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~~ 86 (103)
T d1hdma1 16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVE--GFGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHEP 86 (103)
T ss_dssp CTTSCEEEEEEEEEEBSSCEEEEEEETTEECS--SCCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETT
T ss_pred hcCCCeEEEEEEeeEECCCCEEEEEECCeecC--CcEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeCC
Confidence 45777899999999877788999999998652 222222223333322 2344554 3445557999999983
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.24 E-value=3.2e-06 Score=50.65 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=45.5
Q ss_pred CeeEeeeCCC----CCceEEEEeeCccee----eeecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGL----LPTRVSWIRHRDIHI----LTVGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~----p~~~v~W~~~~~~~~----~~~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..+.. ....+.|+|...... +.... .......|+... .......|.|.+++.+|+|.|.|....
T Consensus 19 vtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 96 (111)
T d1j05a_ 19 ATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGT--GSRTDFTLIIDPVEADDVATYYCQQTN 96 (111)
T ss_dssp EEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--CSSSEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEe--cCCCEEEEEEcccccccCccEEEeecC
Confidence 4699987643 234599999754221 11111 111123577665 456788999999999999999997665
Q ss_pred C
Q psy13371 72 Q 72 (212)
Q Consensus 72 ~ 72 (212)
.
T Consensus 97 ~ 97 (111)
T d1j05a_ 97 E 97 (111)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.24 E-value=4e-06 Score=50.54 Aligned_cols=77 Identities=19% Similarity=0.396 Sum_probs=47.6
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEeeCCCC--------ceeEEeecCceEEEEEEEeee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYDSSRG--------GVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+.|....+.+|+.++|.|..... ...+.|++... .+....... ......... ...+.|.|.++
T Consensus 4 QsP~~~~~~~G~svtl~C~~s~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~ 79 (114)
T d1ogae1 4 QSPKYLFRKEGQNVTLSCEQNLN---HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREK-KESFPLTVTSA 79 (114)
T ss_dssp CSCSEEEEETTCCEEECCEECSC---CSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSS-TTBCCEEECSC
T ss_pred EcCCeEEEcCCCCEEEEEEEecC---CCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEccc-CCeEEEEECcC
Confidence 44667789999999999997532 23489998532 111111111 111111111 12245999999
Q ss_pred eecCCEEEEEEccc
Q psy13371 158 ELKDSGKYSCSPSN 171 (212)
Q Consensus 158 ~~~d~g~y~C~~~n 171 (212)
..+|+|.|.|.+..
T Consensus 80 ~~~DSa~YyCa~~~ 93 (114)
T d1ogae1 80 QKNPTAFYLCASSS 93 (114)
T ss_dssp CSCCCEEEEEEEES
T ss_pred CcCCceeEEEeecc
Confidence 99999999997764
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.24 E-value=6.3e-06 Score=49.36 Aligned_cols=69 Identities=23% Similarity=0.226 Sum_probs=44.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eee-cc-eee---ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTV-GS-YTY---TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~-~~-~~~---~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+ ....+.|+|...... ... .. ... ..+.|+...+ .......|+|.+++.+|+|.|.|....
T Consensus 17 vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~L~i~~~~~~Dsa~YyCa~~~ 94 (111)
T d2esve1 17 VTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAER-TGGTYSTLKVQPAELEDSGVYFCASSQ 94 (111)
T ss_dssp EEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEEC-TTSSSEEEEESSCCGGGCEEEEEEEES
T ss_pred EEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEc-CCCCEEEEEECCcccCCCceEEEeeeC
Confidence 368998654 346899998764221 111 11 111 1236777664 345567899999999999999997543
|
| >d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.24 E-value=2e-06 Score=52.20 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=51.0
Q ss_pred CCceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE----ee---------CCCCceeEEeecCceEEEEEEEeee
Q psy13371 93 SPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS----YD---------SSRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 93 ~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~----~~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+....+.+|+.++|.|.+.+.......+.|.++ ++.++ .. .+..++..+..+....+..|.|+++
T Consensus 7 sg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL 86 (130)
T d1rzga1 7 SGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSL 86 (130)
T ss_dssp CCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeec
Confidence 344568899999999999876444445889875 22221 11 1112233444444444567999999
Q ss_pred eecCCEEEEEEcc
Q psy13371 158 ELKDSGKYSCSPS 170 (212)
Q Consensus 158 ~~~d~g~y~C~~~ 170 (212)
+.+|++.|.|...
T Consensus 87 ~~eDtA~YYCAr~ 99 (130)
T d1rzga1 87 RSEDTAVFYCASP 99 (130)
T ss_dssp CGGGCEEEEEEEC
T ss_pred CCCccEEEEEEEe
Confidence 9999999999754
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.23 E-value=1e-06 Score=51.21 Aligned_cols=69 Identities=23% Similarity=0.384 Sum_probs=41.6
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEeeCCC----CceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYDSSR----GGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
|+.++|.|........ .+.|++... .+...... .++.............|.|++++.+|+|.|.|.+..
T Consensus 1 G~~vtl~C~~~~~~~~--~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~ 78 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQ--SFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT 78 (94)
T ss_dssp TSCEEEEEEECCTTCC--EEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred CccEEEEEEEccccCC--cEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence 6889999998654333 489998531 11111111 011112212222335699999999999999998764
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.23 E-value=3.8e-07 Score=55.49 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=49.0
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEee-----CCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYD-----SSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+.|..+.+.+|+.++|.|......... +.|++... .+... .....+......+ ....|.|++++.+
T Consensus 6 Q~P~sv~~~~G~svtl~C~~s~~~~~~--i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~--~~~~L~I~~~~~~ 81 (119)
T d1f3rb2 6 QSPSLLSASVGDRVTLSCKGSQNINNY--LAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSG--TDYTLTISSLQPE 81 (119)
T ss_dssp EETSEECCCTTCCEEEEEECSSCCBTC--EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEB--TEEEEEECSCCGG
T ss_pred ccCCEEEECCCCCEEEEEEeCCCCcce--eEEeeeecccccEEEEEeeccccCceeeeecccCCC--CEEEEEcccCccC
Confidence 446677789999999999875433334 89998631 12111 0111122222122 2356999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+...
T Consensus 82 DsavYyCa~~~~ 93 (119)
T d1f3rb2 82 DVATYFCYQYNN 93 (119)
T ss_dssp GCSEEEEEEESS
T ss_pred CCeEEEeeccCC
Confidence 999999987643
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.23 E-value=4.9e-06 Score=49.97 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=44.1
Q ss_pred CeeEeeeCCCC-CceEEEEeeCcceeee----ecc-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL-PTRVSWIRHRDIHILT----VGS-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p-~~~v~W~~~~~~~~~~----~~~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.. ...+.|+|..+...+. ... .......|+.+. .......|+|.+++.+|+|.|.|....
T Consensus 16 vtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~Dsa~YyCa~~~ 90 (112)
T d1kgcd1 16 VHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIA--EDRKSSTLILHRATLRDAAVYYCILPL 90 (112)
T ss_dssp EEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEEC--TTSSEEEEEESSCCGGGCEEEEEECCC
T ss_pred EEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeec--ccCCeeEEEEeecccccceeEeeeEec
Confidence 46999987654 4569999976422211 111 111111344443 345677899999999999999998754
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.23 E-value=4.7e-06 Score=47.94 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=42.3
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++.+.|.|.+.+..+..+.+.|.++|..+... ........++.. ..+.|.+ ...+...|+|.+.+.
T Consensus 15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~---~~~~~~~~dgty~~~S~l~v---~~~~~~~ytC~V~H~ 81 (91)
T d3frua1 15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSG---NCSTGPNGDGSFHAWSLLEV---KRGDEHHYQCQVEHE 81 (91)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECCCC---EEEEEECSSSCEEEEEEEEE---ETTCGGGEEEEEECT
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEeCCcc---CccceecCCCCEeEEEEEEE---CCCCCCEEEEEEEeC
Confidence 45789999999987677899999999766311 111122233322 2233444 345556899999986
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.22 E-value=3.8e-06 Score=50.55 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=44.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeee------ccee--eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTV------GSYT--YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~------~~~~--~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+. ...+.|+|..+...... .... .....|+.... ......+|+|.+++++|+|.|.|....
T Consensus 17 vtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~Dsa~YyCA~~~ 93 (113)
T d2ntsp1 17 VTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQ-FSNSRSEMNVSTLELGDSALYLCASSL 93 (113)
T ss_dssp EEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEE-CTTSCEEEEECSCCGGGCEEEEEEEES
T ss_pred EEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeecc-CcCCeeEEEECCCCcccceeeeeeeeC
Confidence 4689997553 46899999654222111 1111 11235665543 455678999999999999999998754
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.22 E-value=1.7e-06 Score=51.77 Aligned_cols=69 Identities=23% Similarity=0.324 Sum_probs=46.0
Q ss_pred CeeEeeeCCCC---CceEEEEeeCcceeeee---cceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLL---PTRVSWIRHRDIHILTV---GSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p---~~~v~W~~~~~~~~~~~---~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.. ...+.|+|..+...... ..... ....||.... ...+..|+|.+++.+|+|.|.|....
T Consensus 18 vtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~--~~~~~~L~I~~~~~~Dsa~YyCa~~~ 94 (110)
T d1oaql_ 18 VTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGNKAALTITGAQTEDEAIYFCALWY 94 (110)
T ss_dssp EEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred EEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecc--cccceeeecCCCCccccEeEEEEccc
Confidence 46899997543 34599998664222211 11111 1236888774 34678999999999999999998654
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=98.22 E-value=2.5e-06 Score=51.69 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=50.1
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEEe----eC---------CCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISY----DS---------SRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~~----~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..+.+|+.++|.|.+.+.......+.|+++- +.++. .. ...++..+..+.......|.|++++.+
T Consensus 10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e 89 (127)
T d2fb4h1 10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE 89 (127)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence 4678899999999998764444458898752 22221 11 112334444444445567999999999
Q ss_pred CCEEEEEEcc
Q psy13371 161 DSGKYSCSPS 170 (212)
Q Consensus 161 d~g~y~C~~~ 170 (212)
|++.|.|...
T Consensus 90 DTA~YYCAr~ 99 (127)
T d2fb4h1 90 DTGVYFCARD 99 (127)
T ss_dssp GCEEEEEEEE
T ss_pred ceeEEEEEEe
Confidence 9999999754
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=2.7e-07 Score=54.70 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=45.2
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.++.+.|.|.+.+..+..+.+.|.++|..+....... ......++. ...+.|.+..-.......|+|.+.+..
T Consensus 19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~-~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~ 92 (102)
T d1rzfl2 19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETT-TPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG 92 (102)
T ss_dssp HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEC-CCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeC-CcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 3567899999998766677899999998763211100 112223333 234556665444334457999999874
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.21 E-value=1.6e-06 Score=52.63 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=46.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee---ecce--eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT---VGSY--TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~--~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+.....+.|+|..+..... .... ......+++.. .......|.|.+++++|+|.|.|....
T Consensus 19 vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~--~~~~~~~L~I~~~~~~DsavYyCa~~~ 92 (119)
T d1f3rb2 19 VTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGS--GSGTDYTLTISSLQPEDVATYFCYQYN 92 (119)
T ss_dssp EEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EEBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred EEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeeccc--CCCCEEEEEcccCccCCCeEEEeeccC
Confidence 368999887766789999976422211 1111 11123577665 344568899999999999999997654
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=98.21 E-value=3.3e-06 Score=49.35 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=41.6
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++..+|.|.+.+..++.+.+.|.++|..+...... .......++... ....-.+...+...|+|.+.++
T Consensus 17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~-~~~~~~~dgtf~--~~s~l~~~~~~~~~ytC~V~H~ 86 (98)
T d1d5mb1 17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVS-TGLIQNGDWTFQ--TLVMLETVPRSGEVYTCQVEHP 86 (98)
T ss_dssp ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEE-CCCEECSSSCEE--EEEEEECCCCTTCEEEEEEECT
T ss_pred cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEE-CeEEeCCCcEEE--EEEEeeEcCCCCCEEEEEEEEC
Confidence 356678999999987777899999998876321111 011223333322 2222244566777999999987
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.21 E-value=1.5e-05 Score=47.69 Aligned_cols=80 Identities=19% Similarity=0.292 Sum_probs=49.1
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCC---CCCceEEEEEcC--eE---EEee-----CCCCceeEEeecCceEEEEEEEee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSP---EPPAYIFWYHHD--EV---ISYD-----SSRGGVSVITEKGEVTTSYLLIQQ 156 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~---~p~~~v~W~~~~--~~---~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~ 156 (212)
.+.|..+.+.+|+.++|.|...... .....+.|++.. +. +... .....+......+ ....|.|++
T Consensus 5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~--~~~~L~I~~ 82 (112)
T d1ncwl1 5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSG--TDFTLKISR 82 (112)
T ss_dssp EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET--TEEEEEESS
T ss_pred eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCC--CEEEEEECc
Confidence 3557778899999999999864321 122348899863 21 1111 1111222222222 235699999
Q ss_pred eeecCCEEEEEEccc
Q psy13371 157 AELKDSGKYSCSPSN 171 (212)
Q Consensus 157 ~~~~d~g~y~C~~~n 171 (212)
++.+|++.|.|...+
T Consensus 83 ~~~eDsAvYYC~~~~ 97 (112)
T d1ncwl1 83 VEAEDLGVYYCWQGT 97 (112)
T ss_dssp CCGGGCEEEEEEECS
T ss_pred cccCcCEeEEEEcCC
Confidence 999999999996543
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.21 E-value=2.9e-06 Score=50.93 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=45.8
Q ss_pred CeeEeeeCCC-----CCceEEEEeeCcceeeee----cce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGL-----LPTRVSWIRHRDIHILTV----GSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~----~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|..++. ....+.|+|..+...... ... ......|+... .......|+|.+++.+|+|.|.|...
T Consensus 19 vtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~--~s~~~~~L~Is~~~~~DsAvYyCa~~ 96 (112)
T d1mjul1 19 VSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGS--GSGTAFTLRISRVEAEDVGVYYCLQH 96 (112)
T ss_dssp EEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--ECSSEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEee--cCCCEEEEEECCccccCCceEEEEeC
Confidence 4699987663 356899998764322211 111 11113577665 45677899999999999999999654
Q ss_pred C
Q psy13371 71 T 71 (212)
Q Consensus 71 ~ 71 (212)
.
T Consensus 97 ~ 97 (112)
T d1mjul1 97 L 97 (112)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=98.20 E-value=3.3e-06 Score=50.91 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=49.7
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE----ee---------CCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS----YD---------SSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~----~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
...+.+|+.+.|.|.+.+.......+.|+++. +.++ .. ....++..+..+.......|.|++++.
T Consensus 9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~ 88 (126)
T d1dfbh1 9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA 88 (126)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence 34678899999999998765444458898852 2221 11 111233444444444456799999999
Q ss_pred cCCEEEEEEc
Q psy13371 160 KDSGKYSCSP 169 (212)
Q Consensus 160 ~d~g~y~C~~ 169 (212)
+|++.|.|..
T Consensus 89 eDtavYYCAr 98 (126)
T d1dfbh1 89 EDMALYYCVK 98 (126)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEEEe
Confidence 9999999964
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.20 E-value=1.5e-06 Score=49.93 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=43.7
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++.+.|.|.+.+..+..+.+.|.++|+.+...... .......++.. ..+.|.+ ...+...|+|.+.++
T Consensus 14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~-~~~~~~~~gt~~~~s~l~v---~~~~~~~ytC~V~H~ 83 (89)
T d2mhaa1 14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMEL-VETRPAGDGTFQKWASVVV---PLGKEQYYTCHVYHQ 83 (89)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEE-CCCEECSSSCEEEEEEEEE---ESSTTTTCEEEEECS
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEE-CcEecCCCCcEEEEEEEEe---cCcCCCEEEEEEEEC
Confidence 456899999999987778889999999877422111 11123333332 2334444 334445799999876
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=98.19 E-value=5.8e-06 Score=49.39 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=48.8
Q ss_pred ceeeeCCCcEEEEeEEeeCCCC-CceEEEEEc--CeEEEe----eC--------CCCceeEEeecCceEEEEEEEeeeee
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEP-PAYIFWYHH--DEVISY----DS--------SRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~--~~~~~~----~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
...+.+|+.+.|.|.+.+..-. ...+.|.++ ++.++. .. ...++..+..+.......|.|++++.
T Consensus 9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~ 88 (119)
T d1ncwh1 9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT 88 (119)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence 3467889999999999986543 234789875 332211 11 11223344444444445699999999
Q ss_pred cCCEEEEEEc
Q psy13371 160 KDSGKYSCSP 169 (212)
Q Consensus 160 ~d~g~y~C~~ 169 (212)
+|++.|.|..
T Consensus 89 eDTAvYYCAr 98 (119)
T d1ncwh1 89 EDTATYYCAG 98 (119)
T ss_dssp GGCEEEEEEE
T ss_pred CCceEEEEeE
Confidence 9999999964
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.18 E-value=4.8e-06 Score=49.80 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=43.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCccee----eee--c-c-eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHI----LTV--G-S-YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~----~~~--~-~-~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|...+ ....+.|+|...... ... . . .......++.... .......|+|.+++.+|+|.|.|....
T Consensus 19 vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 95 (110)
T d2aq2a1 19 VTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASR-PSQEQFSLILESATPSQTSVYFCASGG 95 (110)
T ss_dssp EEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEE-EETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEe-ccCCEEEEEECCCCHhhCEEEEEeeCC
Confidence 468999865 346899999764221 111 0 1 1111124555443 344568899999999999999998664
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=98.18 E-value=2.4e-06 Score=50.07 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=44.9
Q ss_pred eeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 98 VDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 98 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...|+..+|.|.+.+..++.+.+.|.++|..+...... .......++.. ..+.|.+ ..++...|+|.+.+.
T Consensus 16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~-~~~~~~~dgtf~~~s~l~v---~~~~~~~ytC~V~H~ 87 (99)
T d1uvqa1 16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSE-TSFLSKSDHSFFKISYLTF---LPSADEIYDCKVEHW 87 (99)
T ss_dssp CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEE-CCCEECTTSCEEEEEEEEE---CCCTTCCEEEEEECT
T ss_pred ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEe-cceEECCCCCEEEEEEEEE---cCCCCCEEEEEEEeC
Confidence 34567889999999987778889999999877321101 11122333332 2233444 334556899999987
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.18 E-value=8.7e-06 Score=48.89 Aligned_cols=77 Identities=26% Similarity=0.418 Sum_probs=47.4
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eE---EEeeCCC---------CceeEEeecCceEEEEEEEe
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EV---ISYDSSR---------GGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~---~~~~~~~---------~~~~~~~~~~~~~~~~l~i~ 155 (212)
.+.|....+.+|+.++|.|..... ...+.|++.. +. +...... .........+ ....|.|.
T Consensus 4 ~QsP~~~~~~~G~~v~l~C~~~~~---~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~ 78 (113)
T d1j8he1 4 TQSSRYLVKRTGEKVFLECVQDMD---HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKK--ERFSLILE 78 (113)
T ss_dssp EESCSEEEEETTCCEEECEEESSC---CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSST--TBCEEEES
T ss_pred EccCCEEEECCCCCEEEEEEEcCC---ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccC--cEeeeEec
Confidence 345667788999999999986422 2348999853 21 1111111 1111111111 12459999
Q ss_pred eeeecCCEEEEEEccc
Q psy13371 156 QAELKDSGKYSCSPSN 171 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~n 171 (212)
++..+|+|.|.|.+..
T Consensus 79 ~~~~~Dsa~YyCa~~~ 94 (113)
T d1j8he1 79 SASTNQTSMYLCASSS 94 (113)
T ss_dssp SCCGGGCEEEEEEEEC
T ss_pred cCccCCcccEEeeEcc
Confidence 9999999999998764
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.17 E-value=6.8e-06 Score=49.29 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=46.0
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEE----eeC-------CCCceeEEeecCceEEEEEEEeee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVIS----YDS-------SRGGVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~----~~~-------~~~~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+.|....+.+|+.++|.|..... ...+.|+++. +.+. ... ............. ....|.|.++
T Consensus 4 Q~P~~~~~~~G~svtl~C~~s~~---~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~~ 79 (112)
T d2bnub1 4 QTPKFQVLKTGQSMTLQCAQDMN---HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTT-EDFPLRLLSA 79 (112)
T ss_dssp EECSEEEEETTCCEEEEEEESSC---CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSS-SBCCEEESSC
T ss_pred ECCCeEEECCCCCEEEEEEEECC---ccceEecccccccCccceeeEeccCceecCccccceeEecCCC-CEEEEEECCC
Confidence 44666778999999999987532 2348999853 2110 000 0011111111111 1235999999
Q ss_pred eecCCEEEEEEcc
Q psy13371 158 ELKDSGKYSCSPS 170 (212)
Q Consensus 158 ~~~d~g~y~C~~~ 170 (212)
..+|+|.|.|.+.
T Consensus 80 ~~~DsavYyCA~~ 92 (112)
T d2bnub1 80 APSQTSVYFCASS 92 (112)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CHHHCEEEEEeec
Confidence 9999999999765
|
| >d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.17 E-value=5.9e-06 Score=50.24 Aligned_cols=75 Identities=23% Similarity=0.407 Sum_probs=50.8
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE---------------eeCCCCceeEEeecCceEEEEEEEeeee
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS---------------YDSSRGGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
..+++|+.++|.|.+.+.......+.|+++ |+.++ +.....++..+..+....+..|.|++++
T Consensus 10 ~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~ 89 (131)
T d3c2ah1 10 GLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK 89 (131)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred ceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence 467889999999999876544445788875 22221 1112233455555544455679999999
Q ss_pred ecCCEEEEEEcc
Q psy13371 159 LKDSGKYSCSPS 170 (212)
Q Consensus 159 ~~d~g~y~C~~~ 170 (212)
.+|++.|.|...
T Consensus 90 ~eDTAvYYCAR~ 101 (131)
T d3c2ah1 90 TEDTAVYSCTTD 101 (131)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCCceEEEEecc
Confidence 999999999753
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.17 E-value=9e-06 Score=48.90 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=44.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeec------ce--eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVG------SY--TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~------~~--~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|..+ .....+.|+|..+......- .. .....+++.... ......+|+|.++..+|+|.|.|.....
T Consensus 17 vtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~DSa~YyCa~~~~ 94 (114)
T d1ogae1 17 VTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSR-EKKESFPLTVTSAQKNPTAFYLCASSSR 94 (114)
T ss_dssp EEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECC-SSTTBCCEEECSCCSCCCEEEEEEEESS
T ss_pred EEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEc-ccCCeEEEEECcCCcCCceeEEEeeccC
Confidence 46899975 45568999997753221110 00 001123444432 3445678999999999999999976643
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=4.5e-06 Score=49.87 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=46.2
Q ss_pred eeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 97 HVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.+|+.++|.|.+.+. |.+...+.|++++..+........ ..........+.|.+.....++...|+|.|.|.
T Consensus 12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~--~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~ 86 (109)
T d1vcaa1 12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED--ADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLH 86 (109)
T ss_dssp CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSC--CSSCCCEEEEEEEEECCCGGGTTCEEEEEEEEC
T ss_pred CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccc--cccCCcceeeEEEEccCChHHCCcEEEEEEEcC
Confidence 36789999999999764 333345899999887754322110 011112223455777554555555999999976
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.16 E-value=6.3e-06 Score=49.54 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=48.1
Q ss_pred eeeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEeeCCC--------CceeEEeecCceEEEEEEEe
Q psy13371 89 EILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYDSSR--------GGVSVITEKGEVTTSYLLIQ 155 (212)
Q Consensus 89 ~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~ 155 (212)
+.+.|....+.+|+.++|.|..... ...+.|++... .+...... ..+....... .....|.|.
T Consensus 4 VtQ~P~~~~~~~G~~v~l~C~~~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~ 79 (113)
T d1nfdb1 4 VVQSPRHIIKEKGGRSVLTCIPISG---HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFD-DYHSEMNMS 79 (113)
T ss_dssp CEEECSEEEEETTCCCEEEEECCTT---CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECT-TSCEEEECC
T ss_pred EEEcCCEEEEeCCCCEEEEEEeCCC---CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCC-CCeEEEEec
Confidence 3455777889999999999986433 23489998642 11111111 1111111111 122469999
Q ss_pred eeeecCCEEEEEEcc
Q psy13371 156 QAELKDSGKYSCSPS 170 (212)
Q Consensus 156 ~~~~~d~g~y~C~~~ 170 (212)
++..+|+|.|.|.+.
T Consensus 80 ~~~~~Dsa~YyCa~~ 94 (113)
T d1nfdb1 80 ALELEDSAMYFCASS 94 (113)
T ss_dssp SCCGGGCEEECEEEE
T ss_pred ccCcCCceeEEEEee
Confidence 999999999999765
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=2.8e-06 Score=51.54 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=48.2
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCC-CceEEEEEcCe--E---E--EeeCCCC----ceeEEeecCceEEEEEEEeeee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEP-PAYIFWYHHDE--V---I--SYDSSRG----GVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~~~--~---~--~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
.+|..+.+.+|+.++|.|.......+ ...+.|+++.. . + ....... .......+.......|.|+++.
T Consensus 4 tQP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~ 83 (118)
T d1i8lc_ 4 AQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR 83 (118)
T ss_dssp ECCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCC
T ss_pred eCCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccc
Confidence 34556678889999999998543222 22488998642 1 1 1111110 0011111112234579999999
Q ss_pred ecCCEEEEEEccc
Q psy13371 159 LKDSGKYSCSPSN 171 (212)
Q Consensus 159 ~~d~g~y~C~~~n 171 (212)
.+|+|.|.|.+..
T Consensus 84 ~~Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 84 AMDTGLYICKVEL 96 (118)
T ss_dssp GGGCEEEEEEEEE
T ss_pred cCCCEEEEEeEec
Confidence 9999999998754
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.15 E-value=2.1e-05 Score=43.27 Aligned_cols=75 Identities=23% Similarity=0.395 Sum_probs=51.2
Q ss_pred eeeeCCCcEEEEeEEee-CCCCCceEEEEEcCeE-EEe-eCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKY-SPEPPAYIFWYHHDEV-ISY-DSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~-~~~p~~~v~W~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+..|+...|.|.+.. ...|. ++|.+-++. ... ...........+++......|.+..+..+|.|.|+|.|.-.
T Consensus 13 hs~~~G~~f~leCPVkYC~~RPn--VtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~ 90 (104)
T d1xaua_ 13 HSAWTGELFKIECPVKYCVHRPN--VTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 90 (104)
T ss_dssp EEECTTSCEEEEEEEECSSSCCC--EEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred eeEecCCceEecCcchhhcCCCC--cEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence 35778999999999973 22455 999975432 211 11112223445566666778999999999999999998743
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.15 E-value=4.3e-06 Score=50.19 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=48.8
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEEEe----e---------CCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVISY----D---------SSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~~~----~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..+.+|+.+.|.|.+.+..-....+.|+++. +.++. . ....++..+..+.......|.|++++.+
T Consensus 10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e 89 (121)
T d1ol0a_ 10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE 89 (121)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence 4578899999999998754333347898752 22211 1 1112234444444344557999999999
Q ss_pred CCEEEEEEcc
Q psy13371 161 DSGKYSCSPS 170 (212)
Q Consensus 161 d~g~y~C~~~ 170 (212)
|++.|.|...
T Consensus 90 DtAvYYCAr~ 99 (121)
T d1ol0a_ 90 DTAVYYCARE 99 (121)
T ss_dssp GCEEEEEEEC
T ss_pred cceEEEEEEe
Confidence 9999999654
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=98.14 E-value=2.8e-06 Score=51.02 Aligned_cols=75 Identities=13% Similarity=0.237 Sum_probs=48.5
Q ss_pred eeeeCCCcEEEEeEEeeCCC--CCceEEEEEcC--eEEE----eeCC--------CCceeEEeecCceEEEEEEEeeeee
Q psy13371 96 LHVDEGSTINLTCSIKYSPE--PPAYIFWYHHD--EVIS----YDSS--------RGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~--p~~~v~W~~~~--~~~~----~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
..+.+|+.++|.|.+.+... ....+.|+++. +.++ .... ..++..+..+.......|.|++++.
T Consensus 10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~ 89 (120)
T d1ai1h1 10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTN 89 (120)
T ss_dssp SEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCG
T ss_pred ceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeec
Confidence 46788999999999987542 23347898863 3222 1111 1123344444444455799999999
Q ss_pred cCCEEEEEEcc
Q psy13371 160 KDSGKYSCSPS 170 (212)
Q Consensus 160 ~d~g~y~C~~~ 170 (212)
+|++.|.|...
T Consensus 90 eDtAvYYCAr~ 100 (120)
T d1ai1h1 90 EDTAMYYCSRE 100 (120)
T ss_dssp GGCEEEEEEEE
T ss_pred cceeEEEEEec
Confidence 99999999643
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=98.14 E-value=2e-06 Score=50.77 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=44.2
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++.+.|.|.+.+..+..+.+.|.++|......... ......+|. ...+.|.+..-.-.....|+|.+.++
T Consensus 18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~--~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~ 89 (102)
T d1igtb4 18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT--EPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHE 89 (102)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC--CCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECT
T ss_pred cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEc--cceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeC
Confidence 467899999999875566789999998754211111 112223332 23455666444434455899999986
|
| >d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=98.14 E-value=6.9e-06 Score=49.64 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=48.8
Q ss_pred eeeeCCCcEEEEeEEeeCCCC-CceEEEEEc--CeEEEe------------eCCCCceeEEeecCceEEEEEEEeeeeec
Q psy13371 96 LHVDEGSTINLTCSIKYSPEP-PAYIFWYHH--DEVISY------------DSSRGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
..+.+|+.+.|.|.+.+..-. ...+.|+++ |+.++. .....++..+..+.......|.|++++.+
T Consensus 10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e 89 (127)
T d3cx5j1 10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE 89 (127)
T ss_dssp SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence 357889999999999876432 235789885 333211 11122233334444444567999999999
Q ss_pred CCEEEEEEc
Q psy13371 161 DSGKYSCSP 169 (212)
Q Consensus 161 d~g~y~C~~ 169 (212)
|++.|.|..
T Consensus 90 DtAvYyCAr 98 (127)
T d3cx5j1 90 DTATYYCAR 98 (127)
T ss_dssp GCEEEEEEE
T ss_pred cceEEEeee
Confidence 999999974
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.13 E-value=5e-06 Score=49.94 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=46.0
Q ss_pred CeeEeeeCCC-----CCceEEEEeeCcceeeee---c--ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGL-----LPTRVSWIRHRDIHILTV---G--SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~---~--~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|..++. ....+.|+|......... . ........||.... .....+|+|.+++.+|+|.|.|...
T Consensus 20 vtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~~DsavYyCa~~ 97 (113)
T d1n4xl_ 20 ASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKISRVEAEDLGIYYCFQG 97 (113)
T ss_dssp EEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--CSSEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec--cCCcccCccCCCCcccCEEEEEEEC
Confidence 3689998653 235799999764322111 1 11112246787763 4567899999999999999999655
Q ss_pred C
Q psy13371 71 T 71 (212)
Q Consensus 71 ~ 71 (212)
.
T Consensus 98 ~ 98 (113)
T d1n4xl_ 98 S 98 (113)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.1e-05 Score=47.63 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=43.4
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeec--CCEEEEEEcccC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELK--DSGKYSCSPSNA 172 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~--d~g~y~C~~~n~ 172 (212)
......+.+.|.|.+.++.+..+.+.|.++++.......... ....++. ...+.|.+..-+-. ....|+|.+.+.
T Consensus 16 ~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~--~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~ 93 (105)
T d1dn0b2 16 NSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFP--SVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHP 93 (105)
T ss_dssp -----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECC--CEEETTEEEEEEEEEECTTCC---CCCEEEEEEECT
T ss_pred cccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcce--EEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEEC
Confidence 344556789999999987656678999998876532211111 1223332 23455666443322 234899999987
Q ss_pred C
Q psy13371 173 D 173 (212)
Q Consensus 173 ~ 173 (212)
.
T Consensus 94 ~ 94 (105)
T d1dn0b2 94 N 94 (105)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=1.1e-05 Score=48.87 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=44.9
Q ss_pred CeeEeeeCCCC--CceE-EEEeeCcceeee----ec---ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLL--PTRV-SWIRHRDIHILT----VG---SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p--~~~v-~W~~~~~~~~~~----~~---~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|..++.. ...+ .|++..++.... .. .......+|+....+...+..+|+|.+++.+|+|.|.|.+.
T Consensus 18 vtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCa~~ 97 (118)
T d1yjdc1 18 VNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIE 97 (118)
T ss_dssp EEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCEEEEEEEE
T ss_pred EEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCeEEEEEEe
Confidence 36899987653 3334 455544322111 00 11112236777776667778899999999999999999865
Q ss_pred C
Q psy13371 71 T 71 (212)
Q Consensus 71 ~ 71 (212)
.
T Consensus 98 ~ 98 (118)
T d1yjdc1 98 V 98 (118)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.11 E-value=1.1e-06 Score=52.48 Aligned_cols=73 Identities=10% Similarity=0.162 Sum_probs=44.0
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++.++|.|.+.+..+..+.|.|.++|..+..............+|. ...+.|.|..-.......|+|.+.++
T Consensus 19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~ 92 (107)
T d1mjul2 19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHK 92 (107)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECT
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence 46678999999987656678999999887631100000001112222 23455666544444456899999986
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=6.5e-05 Score=43.37 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=40.4
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEe--ecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVIT--EKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++.++|.|.+.+.. |.+.+.|.++++.+... ...... .++.. ..+.|.+ ...+...|+|.+.++
T Consensus 15 s~~~~~L~C~~~g~~-P~~~V~W~~n~~~~~~~----~~~~~~~~~~g~y~v~S~L~v---~~~~~~~~tC~V~h~ 82 (95)
T d1dr9a2 15 TSNIRRIICSTSGGF-PEPHLSWLENGEELNAI----NTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYG 82 (95)
T ss_dssp STTEEEEEEEEEEES-SCEEEEEEESSCEECCS----EEEEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEET
T ss_pred CCCEEEEEEEECccc-CCCEEEEecCCcEeccc----ceeeEecCCCccEEEEEEEEc---cCCccceEEEEEEec
Confidence 467789999999753 33469999999877311 111111 12322 2344554 344567999999987
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.11 E-value=3.9e-06 Score=49.96 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=48.2
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecC-ceEEEEEEEeeeeecCCEEEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKG-EVTTSYLLIQQAELKDSGKYSCS 168 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~ 168 (212)
+..|....+..++.+.|.|.+.+..+..+.+.|.++|..+....... .....++ ....+.|.+..-.. ...|+|.
T Consensus 13 i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~--~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~ 88 (107)
T d1hxmb2 13 IFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEG--NTMKTNDTYMKFSWLTVPEKSL--DKEHRCI 88 (107)
T ss_dssp CCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEEC--CCEECSSSEEEEEEEEECTGGG--GSCEEEE
T ss_pred EECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEcc--ceecCCCeEEEEEEEEEecccC--CCeEEEE
Confidence 34444445667788999999998766777899999987653221111 1122233 32345565543322 2279999
Q ss_pred cccC
Q psy13371 169 PSNA 172 (212)
Q Consensus 169 ~~n~ 172 (212)
+.++
T Consensus 89 V~H~ 92 (107)
T d1hxmb2 89 VRHE 92 (107)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9986
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.10 E-value=9.6e-06 Score=49.55 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=48.2
Q ss_pred eeeeCCCcEEEEeEEeeCCC--CCceEEEEEcC--eE---EEeeCC---------CCceeEEeecCceEEEEEEEeeeee
Q psy13371 96 LHVDEGSTINLTCSIKYSPE--PPAYIFWYHHD--EV---ISYDSS---------RGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~--p~~~v~W~~~~--~~---~~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
..+.+|+.++|.|.+.+... ....+.|+++. +. +..... ..++..+..+.......|.|++++.
T Consensus 10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~ 89 (132)
T d1tjgh1 10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP 89 (132)
T ss_dssp SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence 46788999999999986532 22257899753 21 111111 1223333333333445699999999
Q ss_pred cCCEEEEEEccc
Q psy13371 160 KDSGKYSCSPSN 171 (212)
Q Consensus 160 ~d~g~y~C~~~n 171 (212)
+|++.|.|....
T Consensus 90 eDtAvYYCAr~~ 101 (132)
T d1tjgh1 90 VDTATYFCAHRR 101 (132)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccceEEEEEEec
Confidence 999999997543
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.10 E-value=1.3e-05 Score=48.15 Aligned_cols=69 Identities=14% Similarity=0.059 Sum_probs=44.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----ec--ceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----VG--SYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~--~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.... ....+.|+|......+. .. .... ....|+...+ .......|+|.+++.+|+|.|.|....
T Consensus 19 v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 95 (113)
T d1nfdb1 19 SVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQ-FDDYHSEMNMSALELEDSAMYFCASSL 95 (113)
T ss_dssp CEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEE-CTTSCEEEECCSCCGGGCEEECEEEES
T ss_pred EEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEc-CCCCeEEEEecccCcCCceeEEEEeec
Confidence 579998654 34689999976422211 11 1111 1135776654 344567899999999999999998654
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=98.10 E-value=4.5e-06 Score=50.16 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=45.0
Q ss_pred CeeEeeeCCC------CCceEEEEeeCcceeee---ecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEe
Q psy13371 1 MLHQRKLKGL------LPTRVSWIRHRDIHILT---VGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQL 69 (212)
Q Consensus 1 ~~l~C~~~~~------p~~~v~W~~~~~~~~~~---~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 69 (212)
+.|.|..++. ....+.|+|........ ... .....+.|+... ...+...|+|.+++++|+|.|.|..
T Consensus 19 vtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~--~s~~~~~L~I~~l~~~Dsa~YyCA~ 96 (113)
T d1q9ra1 19 VTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS--GSGTDFTLTITSVQAEDLAVYYCKQ 96 (113)
T ss_dssp EEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EETTEEEEEESSCCGGGCEEEEEEE
T ss_pred EEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEe--CCCCeEeEEecccccCCCeEEEecc
Confidence 4689987653 23569999976422111 111 111223577665 3566788999999999999999986
Q ss_pred cC
Q psy13371 70 ST 71 (212)
Q Consensus 70 ~~ 71 (212)
..
T Consensus 97 ~~ 98 (113)
T d1q9ra1 97 SY 98 (113)
T ss_dssp CS
T ss_pred cC
Confidence 54
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=2.2e-06 Score=50.93 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=46.4
Q ss_pred eeeeCCCcEEEEeEEeeCCC--CCceEEEEEcCeEEEeeCCC--------CceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 96 LHVDEGSTINLTCSIKYSPE--PPAYIFWYHHDEVISYDSSR--------GGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~--p~~~v~W~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+....|+.++|.|....... ....+.|.+++..+...... ..+......+. .+|.|++++.+|+|.|
T Consensus 4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~---~sL~I~~v~~~D~G~Y 80 (105)
T d1dr9a1 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN---LSIVILALRPSDEGTY 80 (105)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTT---TEEEECSCCGGGCEEE
T ss_pred EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCc---EEEEECcCChHHCeEE
Confidence 56788999999998743211 12357888777654222111 01112222222 2599999999999999
Q ss_pred EEEcccC
Q psy13371 166 SCSPSNA 172 (212)
Q Consensus 166 ~C~~~n~ 172 (212)
.|.+.+.
T Consensus 81 ~C~V~~~ 87 (105)
T d1dr9a1 81 ECVVLKY 87 (105)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9998754
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=98.08 E-value=8.4e-06 Score=47.19 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=43.4
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccCCee
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNADVA 175 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~ 175 (212)
++.+.|.|.+.+..+..+.+.|.++|..+..............++.. ..+.|. +...+...|+|.+.++...
T Consensus 15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~---v~~~~~~~ytC~V~H~~~~ 87 (94)
T d1hyrc1 15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATR---ICQGEEQRFTCYMEHSGNH 87 (94)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEE---EETTCGGGEEEEEEETTEE
T ss_pred CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEE---EcCCCCCEEEEEEEECCCC
Confidence 45789999999987678899999999876422111111112222222 122333 3444445799999987543
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.07 E-value=4e-06 Score=50.79 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=46.7
Q ss_pred CCCceeeeCCCcEEEEeEEeeCCC-CCceEEEEEcC--eEE---EeeCCCCc------eeEEeecCceEEEEEEEeeeee
Q psy13371 92 GSPDLHVDEGSTINLTCSIKYSPE-PPAYIFWYHHD--EVI---SYDSSRGG------VSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 92 ~~~~~~~~~g~~~~l~C~~~~~~~-p~~~v~W~~~~--~~~---~~~~~~~~------~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
+|..+.+.+|+.++|.|....... ....+.|+++. +.. ........ ..............|.|++++.
T Consensus 5 QP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~ 84 (117)
T d1dqta_ 5 QPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRA 84 (117)
T ss_dssp CCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCG
T ss_pred CCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcc
Confidence 355667888999999999864322 23347899853 211 11111100 0011111111235699999999
Q ss_pred cCCEEEEEEcc
Q psy13371 160 KDSGKYSCSPS 170 (212)
Q Consensus 160 ~d~g~y~C~~~ 170 (212)
+|+|.|.|.+.
T Consensus 85 ~Dsa~YyCa~~ 95 (117)
T d1dqta_ 85 VDTGLYLCKVE 95 (117)
T ss_dssp GGCEEEEEEEE
T ss_pred ccCEeEEEEEe
Confidence 99999999875
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=4.2e-06 Score=49.34 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=45.2
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++.+.|.|.+.+..+..+.+.|.++|......... ......++.. ..+.|.+..-.......|+|.+.++
T Consensus 18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~--~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~ 89 (102)
T d1l6xa2 18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTT--PPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE 89 (102)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEEC--CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEc--ceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeC
Confidence 467789999999876566789999999865321111 1122233332 3455766544444555899999986
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.05 E-value=8e-06 Score=48.91 Aligned_cols=69 Identities=25% Similarity=0.334 Sum_probs=44.9
Q ss_pred CeeEeeeCCC-----CCceEEEEeeCcceeee----ecce-eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGL-----LPTRVSWIRHRDIHILT----VGSY-TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~-----p~~~v~W~~~~~~~~~~----~~~~-~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
+.|.|..++. ....+.|++..+..... .... ......||+.. ....+..|+|.+++++|+|.|.|...
T Consensus 19 vtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~--~~~~~~~L~I~~~~~eDsAvYYC~~~ 96 (112)
T d1ncwl1 19 ASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGS--GSGTDFTLKISRVEAEDLGVYYCWQG 96 (112)
T ss_dssp EEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred EEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEee--CCCCEEEEEECccccCcCEeEEEEcC
Confidence 4689987543 24579999876432211 1111 11113677765 34567899999999999999999654
Q ss_pred C
Q psy13371 71 T 71 (212)
Q Consensus 71 ~ 71 (212)
.
T Consensus 97 ~ 97 (112)
T d1ncwl1 97 T 97 (112)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.05 E-value=8e-06 Score=48.26 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=43.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee---ecceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT---VGSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..+. ....+.|+|..+..... ...... ....++.... .....+|+|.+++.+|+|.|.|....
T Consensus 18 vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~L~I~~~~~~Dsa~YyCa~~~ 90 (104)
T d1yqvl1 18 VTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG--SGTSYSLTISSMETEDAATYYCQQWG 90 (104)
T ss_dssp EEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred EEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEec--CCCEEEEEecccCcccCCeEEEEecC
Confidence 368998754 34568999976422211 111111 1135666553 45678999999999999999997654
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=98.04 E-value=2.7e-05 Score=47.22 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=47.0
Q ss_pred eeeeCCCcEEEEeEEeeCCC--CCceEEEEEc--CeEE---Ee---------eCCCCceeEEeecCceEEEEEEEeeeee
Q psy13371 96 LHVDEGSTINLTCSIKYSPE--PPAYIFWYHH--DEVI---SY---------DSSRGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~--p~~~v~W~~~--~~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
..+.+|+.++|.|.+.+..- ....+.|+++ ++.+ .. .....++..+..+.......|.|++++.
T Consensus 10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~ 89 (126)
T d1etzb1 10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT 89 (126)
T ss_dssp SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence 36788999999999886432 2224678875 2211 11 1111223444444333445799999999
Q ss_pred cCCEEEEEEcc
Q psy13371 160 KDSGKYSCSPS 170 (212)
Q Consensus 160 ~d~g~y~C~~~ 170 (212)
+|++.|.|...
T Consensus 90 eDtAvYyCAr~ 100 (126)
T d1etzb1 90 SDTATYHCARR 100 (126)
T ss_dssp GGCEEEEEEEE
T ss_pred cccceEEEEEe
Confidence 99999999743
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.04 E-value=5.4e-06 Score=49.77 Aligned_cols=77 Identities=22% Similarity=0.439 Sum_probs=46.8
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCe-----EEEeeCCCC--------ceeEEeecCceEEEEEEEeee
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDE-----VISYDSSRG--------GVSVITEKGEVTTSYLLIQQA 157 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~-----~~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~ 157 (212)
+.|....+.+|+.++|.|..... ...+.|++... .+....... ........ ......|.|.++
T Consensus 3 QsP~~~~~~~G~svtL~C~~~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~ 78 (112)
T d2cdeb1 3 QTPRYLVIGTGKKITLECSQTMG---HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRI-RTEHFPLTLESA 78 (112)
T ss_dssp EECSEEEEETTCCBCCEEEETTC---CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCS-SSSBCCEEBSSC
T ss_pred ECCCEEEECCCCCEEEEEEEeCC---cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecC-CCCceEeeeccc
Confidence 45666788999999999986432 23489998532 111111110 01111111 112245999999
Q ss_pred eecCCEEEEEEccc
Q psy13371 158 ELKDSGKYSCSPSN 171 (212)
Q Consensus 158 ~~~d~g~y~C~~~n 171 (212)
..+|+|.|.|.+..
T Consensus 79 ~~~Dsa~YyCA~~~ 92 (112)
T d2cdeb1 79 RPSHTSQYLCASSE 92 (112)
T ss_dssp CTTTCSEEEEEEEC
T ss_pred cccccccEEEEEec
Confidence 99999999998764
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=98.04 E-value=7.4e-06 Score=47.58 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=42.6
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceE-EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++.++|.|.+.++.+..+.+.|.+++....... ........++... .+.|.+. .++...|+|.+.+.
T Consensus 15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~--~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~ 83 (96)
T d2h26a1 15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQ--LGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHS 83 (96)
T ss_dssp STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCE--ECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEG
T ss_pred CCCeEEEEEEEEEEECCCcEEEEEECcccCCCce--eCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeC
Confidence 4567999999999866677899999887652111 1111233333322 3445553 34556899999986
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.04 E-value=3.2e-06 Score=49.73 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=45.0
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..+.+.|.|.+.+..+..+.+.|.++|......... ......++. ...+.|.+..-.......|+|.+.++
T Consensus 17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~--~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~ 88 (101)
T d1cqka_ 17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNT--QPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE 88 (101)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEEC--CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEe--eeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence 356789999999875567789999999865321111 112223332 23455666544434566899999986
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=98.03 E-value=1.8e-05 Score=47.67 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=46.6
Q ss_pred eeeeCCCcEEEEeEEeeCCC--CCceEEEEEc--CeEEE----eeCC--------CCceeEEeecCceEEEEEEEeeeee
Q psy13371 96 LHVDEGSTINLTCSIKYSPE--PPAYIFWYHH--DEVIS----YDSS--------RGGVSVITEKGEVTTSYLLIQQAEL 159 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~--p~~~v~W~~~--~~~~~----~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~ 159 (212)
..+.+|+.++|.|.+.+..- ....+.|+++ ++.++ .... ..++..+..+.......|.|++++.
T Consensus 10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~ 89 (123)
T d1r0ah1 10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET 89 (123)
T ss_dssp SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence 46788999999999886532 2224689875 22221 1111 1123334333333445699999999
Q ss_pred cCCEEEEEEc
Q psy13371 160 KDSGKYSCSP 169 (212)
Q Consensus 160 ~d~g~y~C~~ 169 (212)
+|++.|.|..
T Consensus 90 eDsAvYyCAr 99 (123)
T d1r0ah1 90 ADTAIYYCAQ 99 (123)
T ss_dssp GGCEEEEEEE
T ss_pred ccceEEeecc
Confidence 9999999964
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=2.1e-05 Score=46.87 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=41.0
Q ss_pred eeeeCCCcEEEEeEEeeCCC-CCceEEE--EEcCeE-EE-eeCC----------CCceeEEeecCceEEEEEEEeeeeec
Q psy13371 96 LHVDEGSTINLTCSIKYSPE-PPAYIFW--YHHDEV-IS-YDSS----------RGGVSVITEKGEVTTSYLLIQQAELK 160 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~-p~~~v~W--~~~~~~-~~-~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~ 160 (212)
+.+..|++++|.|....... +...+.| .++... +. .... ...+... ..+. ..|.|.+++.+
T Consensus 4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~-~~~~---~sL~I~~v~~~ 79 (110)
T d1ncna_ 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF-DSDS---WTLRLHNLQIK 79 (110)
T ss_dssp EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEE-ETTT---TEEEECSCCGG
T ss_pred EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEec-cCCe---EEEEECCCChh
Confidence 46788999999998853322 2122334 333322 11 1000 0111111 1111 24999999999
Q ss_pred CCEEEEEEcccC
Q psy13371 161 DSGKYSCSPSNA 172 (212)
Q Consensus 161 d~g~y~C~~~n~ 172 (212)
|+|.|.|.+...
T Consensus 80 D~G~Y~C~V~~~ 91 (110)
T d1ncna_ 80 DKGLYQCIIHHK 91 (110)
T ss_dssp GCEEEEEEEEEE
T ss_pred HCEEEEEEEEec
Confidence 999999998643
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=98.02 E-value=3.8e-06 Score=48.97 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=41.0
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++..+|.|.+.+..+..+.+.|.++|..+...... .......++.. ..+.|. +...+...|+|.+.++
T Consensus 15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~-~~~~~~~dgty~~~s~l~---v~~~~~~~ytC~V~H~ 84 (97)
T d1uvqb1 15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVS-TPLIRNGDWTFQILVMLE---MTPQRGDVYTCHVEHP 84 (97)
T ss_dssp ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEE-CCCEECSSSCEEEEEEEE---CCSCTTCCEEEEEECT
T ss_pred CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEe-ceeecCCCceEEEEEEec---cCCCCCCEEEEEEEeC
Confidence 356678999999987678899999999776321111 11122333332 223343 3455667999999987
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1.2e-05 Score=46.39 Aligned_cols=64 Identities=13% Similarity=0.241 Sum_probs=43.2
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
++..+..|++++|.|... .+...+.|+++|...... ..... ....+.|.++...|+|.|.|...
T Consensus 11 P~~~V~~G~~VTL~C~~~---~~~~~f~L~Keg~~~~~~--------~~~~~--~~a~F~i~~v~~~~~G~Y~C~~~ 74 (93)
T d1olla2 11 PGPEVISGEKVTFYCRLD---TATSMFLLLKEGRSSHVQ--------RGYGK--VQAEFPLGPVTTAHRGTYRCFGS 74 (93)
T ss_dssp SCSEEETTCEEEEEEECS---SSCSEEEEEEESSSCEEE--------EEECS--SEEEEEEEECCGGGCEEEEEECE
T ss_pred CCCcccCCCcEEEEECCC---CCCCEEEEEECCCcccee--------ecCCC--ceeEEEecccChhcCceEEEEeE
Confidence 345688999999999864 344457888877533211 11111 12348999999999999999754
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.01 E-value=1.4e-06 Score=53.68 Aligned_cols=82 Identities=9% Similarity=0.147 Sum_probs=48.3
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEE----eecCc-eEEEEEEEeeeeecCCE-E
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVI----TEKGE-VTTSYLLIQQAELKDSG-K 164 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~l~i~~~~~~d~g-~ 164 (212)
..|.......++.++|.|.+.+..+..+.|.|.++|+.+............ ..++. ...+.|.+..-.-.+.| .
T Consensus 10 ~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ 89 (127)
T d1ogae2 10 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNH 89 (127)
T ss_dssp ECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCE
T ss_pred ECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCE
Confidence 334433445577899999999876667789999999876321000000000 11222 23355766544434555 8
Q ss_pred EEEEcccC
Q psy13371 165 YSCSPSNA 172 (212)
Q Consensus 165 y~C~~~n~ 172 (212)
|+|.+.+.
T Consensus 90 ytC~V~H~ 97 (127)
T d1ogae2 90 FRCQVQFY 97 (127)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 99999875
|
| >d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.01 E-value=1.3e-06 Score=52.04 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=49.5
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE----eeCCC---------CceeEEeecCceEEEEEEEeeee
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS----YDSSR---------GGVSVITEKGEVTTSYLLIQQAE 158 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~----~~~~~---------~~~~~~~~~~~~~~~~l~i~~~~ 158 (212)
....+.+|+.+.|.|.+.+.......+.|+++ ++.++ ..... .++..+..+....+..|.|++++
T Consensus 8 G~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~ 87 (117)
T d1b2wh1 8 GGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLR 87 (117)
T ss_dssp CCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeecccc
Confidence 34568899999999999875444445788875 22211 11111 12334444444445679999999
Q ss_pred ecCCEEEEEEc
Q psy13371 159 LKDSGKYSCSP 169 (212)
Q Consensus 159 ~~d~g~y~C~~ 169 (212)
.+|++.|.|..
T Consensus 88 ~eDTAvYYCAr 98 (117)
T d1b2wh1 88 PEDTAVYYCAR 98 (117)
T ss_dssp GGGCEEEECCE
T ss_pred CCcceEEEEcc
Confidence 99999999954
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=5.3e-05 Score=41.06 Aligned_cols=60 Identities=17% Similarity=0.317 Sum_probs=39.1
Q ss_pred CeeEeeeCCCCC--ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCceeEE
Q psy13371 1 MLHQRKLKGLLP--TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVRSFF 78 (212)
Q Consensus 1 ~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 78 (212)
+.|+|..++.+. ..-.|+|++ +++.... .......+.|.. .+++|.|.|.+...+.....
T Consensus 15 ~~LtCnLt~s~~~i~ghrW~K~g--kvl~ed~--------------~~~~~tey~V~~--~D~SGeY~CVFl~~P~~~a~ 76 (80)
T d3b5ha2 15 ILLTCSLNDSATEVTGHRWLKGG--VVLKEDA--------------LPGQKTEFKVDS--DDQWGEYSCVFLPEPMGTAN 76 (80)
T ss_dssp EEEEEEEESCSSCCCEEEEESSS--EEEECTT--------------CCCSEEEEEECG--GGCCEEEEEEEESTTSCEEE
T ss_pred EEEEEECCCCCCceeeeEEeeCC--EEccccC--------------CCCCceEEEEec--CCCCceEEEEEcCCCcceeE
Confidence 369999988754 466999988 4443221 122334566765 78999999998765544433
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=8.7e-06 Score=47.21 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=42.4
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceE-EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
++.+.|.|.+.+..+..+.+.|.++|+.+...... .......++... .+.|. +...+...|+|.+.+.
T Consensus 15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~-~~~~~~~~~~~~~~s~l~---v~~~~~~~ytC~V~H~ 83 (95)
T d1k5na1 15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTEL-VETRPAGDRTFQKWAAVV---VPSGEEQRYTCHVQHE 83 (95)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEE-CCCEECSSSCEEEEEEEE---EETTCGGGEEEEEECT
T ss_pred CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCcee-ccEEcCCCCeEEEEEEEE---EEcCCCCEEEEEEEEC
Confidence 45789999999987788889999999876422111 111222233222 22233 3444455899999986
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=5.4e-06 Score=49.03 Aligned_cols=73 Identities=23% Similarity=0.283 Sum_probs=46.3
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..+..++|.|.+.+..+..+.+.|.++|..+..... .......++. ...+.|.|..-.......|+|.+.++.
T Consensus 19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~--~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~ 92 (104)
T d1o0va1 19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLS--TASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG 92 (104)
T ss_dssp CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGE--EEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCce--eeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence 345678899999987666778999999987642211 1112223332 234557665444445668999999875
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.98 E-value=7.3e-05 Score=43.49 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=41.9
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
+..+..|++++|.|... .+...+.|+++|....... ......+. ...+.|..+...|+|.|.|....
T Consensus 14 ~~~V~~G~~VTL~C~~~---~~~~~f~L~k~g~~~~~~~-----~~~~~~~~--~~~f~~~~~~~~~~G~Y~C~y~~ 80 (99)
T d1nkra2 14 GPTVLAGENVTLSCSSR---SSYDMYHLSREGEAHERRL-----PAGPKVNG--TFQADFPLGPATHGGTYRCFGSF 80 (99)
T ss_dssp CSEECTTCEEEEEEEES---SCCSEEEEEETTCSSCEEE-----ECEEEETT--EEEEEEEEEECCSCEEEEEEEEE
T ss_pred CCcccCCCeEEEEECCC---CCccEEEEEECCCccccEE-----EccccCCc--cEEEEEeccccccCEEEEEEeec
Confidence 45688999999999864 3444588888875321110 00111111 12367778888999999997653
|
| >d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=2.5e-06 Score=50.81 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=43.4
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++.+.|.|.+.+..+..+.|.|.++|.................++. ...+.|.|..-.......|+|.+.++
T Consensus 19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~ 92 (107)
T d1c5cl2 19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 92 (107)
T ss_dssp HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECT
T ss_pred cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence 35689999999987555678999999876521100000000111222 23456766544434445899999987
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.96 E-value=6.9e-06 Score=48.36 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=45.2
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.+.|.|.+.+..+..+.+.|.+++......... ......+|. ...+.|.+..-.......|+|.+.++
T Consensus 19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~--~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~ 89 (102)
T d1i1ca2 19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNT--PPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE 89 (102)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC--CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEc--ccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence 56789999999876677889999999765211111 112223333 23455666555445566899999986
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.92 E-value=1.8e-05 Score=47.35 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=43.2
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeee------cceeeec--CCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTV------GSYTYTS--DQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~------~~~~~~~--~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..+. ....+.|+|......... ....... ..++.... ....+..|+|.++.++|+|.|.|....
T Consensus 17 vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~DsavYyCA~~~ 93 (112)
T d2bnub1 17 MTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSR-STTEDFPLRLLSAAPSQTSVYFCASSY 93 (112)
T ss_dssp EEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECC-SSSSBCCEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEec-CCCCEEEEEECCCCHHHCEEEEEeecC
Confidence 468998764 456899999664222111 1111111 24444442 344456899999999999999997653
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.91 E-value=2.3e-05 Score=46.94 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=43.7
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----e--cceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----V--GSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~--~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|... .....+.|||..+...+. . ..... ....++...+ .......|+|.+++.+|+|.|.|....
T Consensus 18 v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~Dsa~YyCa~~~ 94 (113)
T d1j8he1 18 VFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSR-EKKERFSLILESASTNQTSMYLCASSS 94 (113)
T ss_dssp EEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEEC-SSTTBCEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEe-ccCcEeeeEeccCccCCcccEEeeEcc
Confidence 46899864 345679999976422111 1 01111 1124555543 445567899999999999999998764
|
| >d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.90 E-value=1.8e-06 Score=51.14 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=44.5
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++.+.|.|.+.+..+..+.+.|.+++..+....... .....++. ...+.|.+..-...+...|+|.+.++
T Consensus 19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~--~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~ 90 (104)
T d1nfde2 19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT--KPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHE 90 (104)
T ss_dssp HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC--CCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECT
T ss_pred cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEec--cccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEEC
Confidence 3567899999998755667899999998774221111 11112222 22344655444445556899999986
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=4.5e-05 Score=44.06 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=37.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|... .+...+.|+|++......... .......+.+.|.+++.+|+|.|.|...+.
T Consensus 21 VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~------------~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~ 79 (95)
T d1olla1 21 VTICCQGN-YGAVEYQLHFEGSLFAVDRPK------------PPERINKVKFYIPDMNSRMAGQYSCIYRVG 79 (95)
T ss_dssp EEEEEECC-TTCCEEEEEETTEEEEEECCS------------SCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred EEEEEecC-CCccEEEEEECCCCcceeEEc------------cCCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence 46899864 345677788776321111100 001234567999999999999999997654
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=1.9e-05 Score=46.14 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=37.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
|.|.|... .+...+.|+|++......... . ..........+.|.+++.+|+|.|.|...+.
T Consensus 24 VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~-~---------~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~ 84 (99)
T d1ucta1 24 VKIQCQAI-REAYLTQLMIIKNSTYREIGR-R---------LKFWNETDPEFVIDHMDANKAGRYQCQYRIG 84 (99)
T ss_dssp EEEEECCC-TTCSEEEEEEEETTEEEECSE-E---------CC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEEcCC-CCCcEEEEEECCCcCceeccc-c---------ccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence 46899875 455688888876422221110 0 0001223456889999999999999998764
|
| >d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.88 E-value=1.9e-06 Score=51.42 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=49.0
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEc--CeEEE---eeCCCC---------ceeEEeecCceEEEEEEEeeeeecC
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHH--DEVIS---YDSSRG---------GVSVITEKGEVTTSYLLIQQAELKD 161 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--~~~~~---~~~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d 161 (212)
..+.+|+.++|.|.+.+.......+.|+++ ++.++ .-.... ++..+..+....+..|.|++++.+|
T Consensus 10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD 89 (116)
T d1fn4b1 10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD 89 (116)
T ss_dssp SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence 357789999999999886555556889985 33221 111111 1223333333344569999999999
Q ss_pred CEEEEEEcc
Q psy13371 162 SGKYSCSPS 170 (212)
Q Consensus 162 ~g~y~C~~~ 170 (212)
++.|.|...
T Consensus 90 TAvYyCAr~ 98 (116)
T d1fn4b1 90 TGTYYCTRD 98 (116)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEee
Confidence 999999643
|
| >d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunomodulatory protein m144, alpha-3 domain species: Murine cytomegalovirus [TaxId: 10366]
Probab=97.88 E-value=1.5e-05 Score=46.43 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=42.3
Q ss_pred CCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCC---CceeEEeecCceE-EEEEEEeeeeecCCEEEEEEcccC
Q psy13371 101 GSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSR---GGVSVITEKGEVT-TSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 101 g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+.++|.|.+.++.+..+.+.|.+++..+...... ........++... .+.|.+ ...+...|+|.+.+.
T Consensus 14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~ 86 (98)
T d1u58a1 14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYV---DGGLEHVYSCRVKGI 86 (98)
T ss_dssp SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEE---CTTCGGGEEEEEEEG
T ss_pred CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEE---CCCCCCEEEEEEEeC
Confidence 45789999999987788899999998755322111 1111223333322 233444 444556799999875
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=1.2e-05 Score=46.66 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=42.9
Q ss_pred CceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 94 PDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 94 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
++..+..|++++|.|.... .....+.|++++.... . . .... +.. ..+.|.++..+|+|.|.|....
T Consensus 12 P~~~V~~G~~VTL~C~~~~--~~~~~f~L~k~g~~~~----~--~-~~~~-~~~--a~F~l~~v~~~~~G~Y~C~y~~ 77 (96)
T d1ucta2 12 RGLVLMPGENISLTCSSAH--IPFDRFSLAKEGELSL----P--Q-HQSG-EHP--ANFSLGPVDLNVSGIYRCYGWY 77 (96)
T ss_dssp SCSEECTTCCCEEEEECSS--SCCSEEEEEETTCSSC----C--S-EEEC-SSS--EEEECCSCCGGGCEEEEEEEEC
T ss_pred CCCccCCCCeEEEEEeCCC--CCceEEEEEECCcccc----e--E-EcCC-Ccc--cEEEEeccccccCcEEEEEEEc
Confidence 3457899999999998521 1223478888885321 1 0 1111 111 2488899999999999998653
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.87 E-value=1e-05 Score=47.54 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=42.4
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
..++.++|.|.+.+..+..+.|.|..++......... ....+|.. ..+.|.|..-.. ..+.|+|.+.++
T Consensus 18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~----~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~ 87 (101)
T d1kcvh2 18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVS----AVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHP 87 (101)
T ss_dssp TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECC----CEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEG
T ss_pred cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeee----eecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeC
Confidence 3578899999999876667789998777532111111 11223322 344566643333 356899999987
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.84 E-value=0.00011 Score=40.36 Aligned_cols=66 Identities=20% Similarity=0.282 Sum_probs=43.1
Q ss_pred eeEeeeCCC-CCceEEEEeeCcceeeeecceeeecCCceEEEee-CCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 2 LHQRKLKGL-LPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHR-REGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 2 ~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
.|.|.+.-- ..|.++|.|.++..-.+.... .++++-=.. ..-.-+.|++..+.++|.|.|+|.+.-
T Consensus 22 ~leCPVkYC~~RPnVtWCKlngt~cv~Le~~----pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf 89 (104)
T d1xaua_ 22 KIECPVKYCVHRPNVTWCKHNGTIWVPLEVG----PQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF 89 (104)
T ss_dssp EEEEEEECSSSCCCEEEEEECSSSEEECCCB----TTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred EecCcchhhcCCCCcEEEEeCCcEEEEeecC----CccccchhhcCCeeEEEEEeeeeeecCCCceEEecCC
Confidence 588999764 689999999886443332210 122211111 122345799999999999999999864
|
| >d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.84 E-value=1.6e-05 Score=46.77 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=40.0
Q ss_pred eCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 99 DEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 99 ~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
..++.+.|.|.+.+.....+.|.|..++........ .....+|.. ..+.|.|..-.. +.+.|+|.+.+..
T Consensus 18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~----~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~ 88 (102)
T d1mjuh2 18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTF----PAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPA 88 (102)
T ss_dssp ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC----CCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGG
T ss_pred cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEec----ccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECC
Confidence 346789999999987666778999766532211100 112233322 345566654443 2467999999873
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.83 E-value=0.00032 Score=41.66 Aligned_cols=79 Identities=25% Similarity=0.367 Sum_probs=46.5
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEE---EeeCCCCceeEEee-cCce-----EEEEEEEeeee
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVI---SYDSSRGGVSVITE-KGEV-----TTSYLLIQQAE 158 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~---~~~~~~~~~~~~~~-~~~~-----~~~~l~i~~~~ 158 (212)
.+.|....+.+|+.++|.|........ .+.|++.. +.+ .............. .+.+ ..+.|.|....
T Consensus 5 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~--~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~ 82 (112)
T d1fo0b_ 5 EQNPRWRLVPRGQAVNLRCILKNSQYP--WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN 82 (112)
T ss_dssp EEECSEEECCTTCCEEEEEEESCTTCC--EEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEES
T ss_pred EeCCCeEEECCCCCEEEEEEEecCCCC--cEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCC
Confidence 445667778999999999987543223 48999863 222 11111111111100 0000 11348888889
Q ss_pred ecCCEEEEEEcc
Q psy13371 159 LKDSGKYSCSPS 170 (212)
Q Consensus 159 ~~d~g~y~C~~~ 170 (212)
.+|++.|.|...
T Consensus 83 ~~dsa~Y~Ca~~ 94 (112)
T d1fo0b_ 83 MSQGRTLYCTCS 94 (112)
T ss_dssp CCSCEEEEEEEE
T ss_pred ccCCccEEEEEe
Confidence 999999999854
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=4.2e-05 Score=46.16 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=41.4
Q ss_pred eeeCCCcEEEEeEEeeCCCCCceEEE-EEcC-e---EEE--eeCCC------CceeEEeecCceEEEEEEEeeeeecCCE
Q psy13371 97 HVDEGSTINLTCSIKYSPEPPAYIFW-YHHD-E---VIS--YDSSR------GGVSVITEKGEVTTSYLLIQQAELKDSG 163 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~p~~~v~W-~~~~-~---~~~--~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~g 163 (212)
.+.+|+.++|.|...+.......+.| ++.. . .+. ..... ..+.....+.......|.|.+++.+|+|
T Consensus 11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 90 (118)
T d1yjdc1 11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD 90 (118)
T ss_dssp EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence 46679999999998654333322344 4432 1 111 11100 1111111111112346999999999999
Q ss_pred EEEEEccc
Q psy13371 164 KYSCSPSN 171 (212)
Q Consensus 164 ~y~C~~~n 171 (212)
.|.|.+..
T Consensus 91 vYyCa~~~ 98 (118)
T d1yjdc1 91 IYFCKIEV 98 (118)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99997653
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=6.9e-05 Score=43.52 Aligned_cols=69 Identities=10% Similarity=0.113 Sum_probs=38.9
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
+..+..|++++|.|... .....+.+++++....... ..............+.|.++...|+|.|+|...
T Consensus 12 ~~~v~~G~~VTL~C~~~---~~~~~f~L~k~g~~~~~~~----~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~ 80 (98)
T d1ugna2 12 SPVVNSGGNVTLQCDSQ---VAFDGFILCKEGEDEHPQC----LNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY 80 (98)
T ss_dssp CSEEETTCCEEEEEECS---SCCSEEEEEEC------CE----EEC------CCEEEEEECCCCTTSCEEEEEEEE
T ss_pred CCccCCCCcEEEEeCCC---CCCCEEEEEECCCcCCcEe----eeeEEcCCCceEEEEEeeecccCCCeEEEEeeE
Confidence 45688999999999863 2333466677665321100 000000000111248899999999999999764
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.79 E-value=2.5e-05 Score=46.70 Aligned_cols=69 Identities=10% Similarity=0.080 Sum_probs=42.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeee----e--cce--eeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILT----V--GSY--TYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~----~--~~~--~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|.... ....+.|+|..+..... . ... ......++...+ .......|+|.+++++|+|.|.|....
T Consensus 16 vtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~Dsa~YyCA~~~ 92 (112)
T d2cdeb1 16 ITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSR-IRTEHFPLTLESARPSHTSQYLCASSE 92 (112)
T ss_dssp BCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECC-SSSSBCCEEBSSCCTTTCSEEEEEEEC
T ss_pred EEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeec-CCCCceEeeeccccccccccEEEEEec
Confidence 468999754 44689999976422111 1 110 111123344332 344567899999999999999997654
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00012 Score=42.25 Aligned_cols=61 Identities=8% Similarity=0.227 Sum_probs=38.2
Q ss_pred eeEeeeCC-CCCceEEEEeeCcceeeeecceee--ecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKG-LLPTRVSWIRHRDIHILTVGSYTY--TSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.| +|.+.|.|++++. .+........ ..++.|.+.. .|.+. ..+...|+|.+.+.+
T Consensus 20 ~L~C~~~g~~P~~~V~W~~n~~-~~~~~~~~~~~~~~~g~y~v~S-------~L~v~---~~~~~~~tC~V~h~~ 83 (95)
T d1dr9a2 20 RIICSTSGGFPEPHLSWLENGE-ELNAINTTVSQDPETELYAVSS-------KLDFN---MTTNHSFMCLIKYGH 83 (95)
T ss_dssp EEEEEEEEESSCEEEEEEESSC-EECCSEEEEEECTTTCCEEEEE-------EEEEE---TTSCEEEEEEEEETT
T ss_pred EEEEEECcccCCCEEEEecCCc-EecccceeeEecCCCccEEEEE-------EEEcc---CCccceEEEEEEecC
Confidence 58999998 5999999998763 2221111111 1234555553 45553 345678999998764
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=6e-05 Score=44.73 Aligned_cols=62 Identities=6% Similarity=0.096 Sum_probs=34.5
Q ss_pred CeeEeeeCCC-CC--ceEEEEeeCcceeeeecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCE-EEEEEecCC
Q psy13371 1 MLHQRKLKGL-LP--TRVSWIRHRDIHILTVGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAG-VYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~--~~v~W~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~ 72 (212)
+.|.|.+.+. |. +.+.|++++. .+.... .....++.+... ..|++. ++.+|.| .|+|++.+.
T Consensus 19 ~~l~C~v~~~~P~~~~~i~W~~g~~--~~~~~~~~~~~~~~~~~~~~-------s~l~~~-~~~~D~g~~ltC~a~~~ 86 (109)
T d1vcaa1 19 ITVKCSVADVYPFDRLEIDLLKGDH--LMKSQEFLEDADRKSLETKS-------LEVTFT-PVIEDIGKVLVCRAKLH 86 (109)
T ss_dssp EEEEEEEEEEBSGGGEEEEEEETTE--EEEEEECCSCCSSCCCEEEE-------EEEEEC-CCGGGTTCEEEEEEEEC
T ss_pred EEEEeEeCCcCCCCceEEEEeccCc--eeeccccccccccCCcceee-------EEEEcc-CChHHCCcEEEEEEEcC
Confidence 3689999884 64 4789998763 222111 111112223222 145664 4455555 799999863
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.73 E-value=0.00019 Score=41.35 Aligned_cols=69 Identities=14% Similarity=0.090 Sum_probs=43.5
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEccc
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSN 171 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 171 (212)
+..+..|++++|.|... .....+.+++++....... .............+.|.++...|+|.|.|....
T Consensus 10 ~~~V~~G~~VTl~C~~~---~~~~~f~L~keg~~~~~~~-----~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~ 78 (96)
T d1nkra1 10 GPLVKSEETVILQCWSD---VMFEHFLLHREGMFNDTLR-----LIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV 78 (96)
T ss_dssp CSEEETTCCEEEEEEES---SCCSEEEEEEESSSCEEEE-----EECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred CCccCCCCcEEEEECCC---CCCCEEEEEECCCcCCcee-----eeeeecCCceEEEEEEcccCcccCeEEEEEEEc
Confidence 45688999999999874 2333477888775321100 000111112223489999999999999997653
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=7.7e-05 Score=43.10 Aligned_cols=56 Identities=9% Similarity=0.072 Sum_probs=38.1
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
|.|.|.....+...+.|+|++...... .. .....+.+.|.+++.+|+|.|.|....
T Consensus 22 VTL~C~~~~~~~~~f~L~k~g~~~~~~-----------~~----~~~~~a~F~l~~v~~~~~G~Y~C~y~~ 77 (96)
T d1ucta2 22 ISLTCSSAHIPFDRFSLAKEGELSLPQ-----------HQ----SGEHPANFSLGPVDLNVSGIYRCYGWY 77 (96)
T ss_dssp CEEEEECSSSCCSEEEEEETTCSSCCS-----------EE----ECSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred EEEEEeCCCCCceEEEEEECCcccceE-----------Ec----CCCcccEEEEeccccccCcEEEEEEEc
Confidence 579998654555678899877421111 00 112345788999999999999998765
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=1.4e-05 Score=46.44 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=41.4
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcc
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPS 170 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 170 (212)
+..+..|++++|.|... .+...+.+++++........... ..... ..+.|.++...|+|.|.|...
T Consensus 12 s~~V~~G~~VTL~C~~~---~~~~~f~L~keg~~~~~~~~~~~--~~~~~-----a~F~i~~v~~~~~G~Y~C~y~ 77 (96)
T d1ugna1 12 GSVITQGSPVTLRCQGG---QETQEYRLYREKKTAPWITRIPQ--ELVKK-----GQFPIPSITWEHTGRYRCYYG 77 (96)
T ss_dssp CSEEETTCCEEEEEECC---TTCCCEEEEESSSCCHHHHTSCH--HHHTT-----TEEEESSCCGGGCEEEEEEEE
T ss_pred CCccCCCCcEEEEEeCC---CCCCEEEEEECCCCcccEEEccC--CCCCE-----EEEEEEecCHHHCCeEEEEEe
Confidence 35688999999999863 33334677777653211000000 00011 138999999999999999865
|
| >d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.70 E-value=7.7e-05 Score=43.67 Aligned_cols=71 Identities=14% Similarity=0.265 Sum_probs=43.5
Q ss_pred CCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 100 EGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 100 ~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
.++.+.|.|.+.+. |.....+.|.+++......... .....++. ...+.|.|..-.-.....|+|.+.+..
T Consensus 18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~---~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s 90 (102)
T d2fbjh2 18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFP---PALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDS 90 (102)
T ss_dssp CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECC---CEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETT
T ss_pred CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEee---eEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECC
Confidence 46789999999986 3334567888777654322111 12223332 234567775554445568999999863
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.68 E-value=5.5e-05 Score=45.17 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=42.9
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeee------ccee---eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTV------GSYT---YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~------~~~~---~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
+.|.|..++.....+.|+|......+.. .... .....|+...+. ++..|.|..++.+|++.|.|....
T Consensus 19 vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~---~~~~l~l~~~~~~dsa~Y~Ca~~~ 95 (112)
T d1fo0b_ 19 VNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV---TDTELRLQVANMSQGRTLYCTCSA 95 (112)
T ss_dssp EEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE---ETTEEEEEEESCCSCEEEEEEEES
T ss_pred EEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccc---cccEEEEecCCccCCccEEEEEec
Confidence 4689998887767899999864222111 0111 111246665532 223688888999999999998643
|
| >d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.62 E-value=2.1e-05 Score=46.29 Aligned_cols=73 Identities=15% Similarity=0.316 Sum_probs=43.4
Q ss_pred eeCCCcEEEEeEEeeCC-C-CCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 98 VDEGSTINLTCSIKYSP-E-PPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 98 ~~~g~~~~l~C~~~~~~-~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...+..++|.|.+.+.. . +.+.+.|.+++......... ......++.. ..+.|.|..-.-.....|+|.+.++
T Consensus 13 ~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~--~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~ 88 (103)
T d1i1ca1 13 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTH--APEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSG 88 (103)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEEC--CCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECS
T ss_pred hccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEEC--CcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeC
Confidence 34567789999998753 2 34678999999876322111 1122233322 3445665433334445799999987
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.60 E-value=5.3e-07 Score=52.69 Aligned_cols=74 Identities=26% Similarity=0.456 Sum_probs=44.1
Q ss_pred eeeeCCCcEEEEeEEeeCCCCCceEEEEEcC--eEE----EeeC----CCCceeEEeecCceEEEEEEEeeeeecCCEEE
Q psy13371 96 LHVDEGSTINLTCSIKYSPEPPAYIFWYHHD--EVI----SYDS----SRGGVSVITEKGEVTTSYLLIQQAELKDSGKY 165 (212)
Q Consensus 96 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~~--~~~----~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 165 (212)
+.+.+|+.++|.|..... ...+.|++.. +.+ .... ...++.....+.......|.|.+++.+|+|.|
T Consensus 3 lsV~eG~~vtL~C~~~~~---~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 79 (96)
T d1ymmd1 3 LSIQEGENATMNCSYKTS---INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASY 79 (96)
T ss_dssp CCCSSCCCCCBCCBCSSC---EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCC
T ss_pred ceECCCCCEEEEEEEeCC---cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEE
Confidence 457899999999987432 2358999842 211 1110 01112222211111224599999999999999
Q ss_pred EEEcccC
Q psy13371 166 SCSPSNA 172 (212)
Q Consensus 166 ~C~~~n~ 172 (212)
.|.+...
T Consensus 80 yCA~~~~ 86 (96)
T d1ymmd1 80 FCATDTT 86 (96)
T ss_dssp EEEEEET
T ss_pred eEeEecC
Confidence 9987543
|
| >d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.60 E-value=6.8e-05 Score=42.05 Aligned_cols=67 Identities=21% Similarity=0.485 Sum_probs=43.0
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee-cCCEEEEEEcccC-CeeEE
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL-KDSGKYSCSPSNA-DVASV 177 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~-~~~~~ 177 (212)
.|..++|+|+..+. .. +.|.+++..++..... .|.+.+.+. +++|.|.|...+. .+..+
T Consensus 13 SGTtV~LTCP~~~~--~~--I~Wkkn~~~i~g~~~~---------------~L~L~~FSE~e~SGyY~C~~~~~~~~~~L 73 (100)
T d1jbja2 13 SGTSVELTCPLDSD--EN--LKWEKNGQELPQKHDK---------------HLVLQDFSEVEDSGYYVCYTPASNKNTYL 73 (100)
T ss_dssp ETTEEEEECSSCCC--TT--CEEEETTEEECSCCCS---------------EEEEESCCTTTSCEEEEEECSSCCCCCCE
T ss_pred eCCEEEEECCCCCC--Cc--eEEeeccccCCCCCCc---------------EEEEccccccccCcceEEecCCCCcceEE
Confidence 48899999997532 33 8999999877321111 277777655 8999999976554 33334
Q ss_pred EEEEeecc
Q psy13371 178 YVHVLNGE 185 (212)
Q Consensus 178 ~~~v~~~~ 185 (212)
.+...+++
T Consensus 74 YLKARV~~ 81 (100)
T d1jbja2 74 YLKARVGS 81 (100)
T ss_dssp EECCCCCS
T ss_pred EEEEEEcc
Confidence 44434443
|
| >d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=97.58 E-value=7.9e-05 Score=44.95 Aligned_cols=73 Identities=15% Similarity=0.259 Sum_probs=45.7
Q ss_pred eeCCCcEEEEeEEeeCC-C-CCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 98 VDEGSTINLTCSIKYSP-E-PPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 98 ~~~g~~~~l~C~~~~~~-~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
...++.+.|.|.+.+.. . ....+.|.+++........ .......++.. ..+.|.|..-.-.....|+|.+.+.
T Consensus 29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~--~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~ 104 (119)
T d1igtb3 29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQT--QTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNK 104 (119)
T ss_dssp HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTC--BCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECT
T ss_pred cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEE--CccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEEC
Confidence 45578899999998853 2 3567899999987632211 11222333332 3455666444444556899999987
|
| >d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.53 E-value=0.00037 Score=40.61 Aligned_cols=66 Identities=9% Similarity=0.133 Sum_probs=40.1
Q ss_pred CeeEeeeCCC-CC--ceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 1 MLHQRKLKGL-LP--TRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 1 ~~l~C~~~~~-p~--~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
+.|.|.+.|. |. ..+.|.+++..............++.|+... .|.|..........|+|++.+..
T Consensus 22 v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S-------~L~v~~~~W~~~~~ytC~V~H~s 90 (102)
T d2fbjh2 22 VIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSN-------QLTLPAVECPEGESVKCSVQHDS 90 (102)
T ss_dssp EEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEE-------EEEECGGGSCTTCEEEEEEEETT
T ss_pred EEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEE-------EEEEeHHHccCCCEEEEEEEECC
Confidence 3689999994 53 4677877653211111122334456666654 57777666555567999998753
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.00032 Score=40.15 Aligned_cols=54 Identities=9% Similarity=0.045 Sum_probs=37.0
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEec
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLS 70 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 70 (212)
|.|.|... .+...+.|+|++...... . ......+.+.|.+++.+|+|.|.|...
T Consensus 21 VTL~C~~~-~~~~~f~L~Keg~~~~~~--------------~-~~~~~~a~F~i~~v~~~~~G~Y~C~~~ 74 (93)
T d1olla2 21 VTFYCRLD-TATSMFLLLKEGRSSHVQ--------------R-GYGKVQAEFPLGPVTTAHRGTYRCFGS 74 (93)
T ss_dssp EEEEEECS-SSCSEEEEEEESSSCEEE--------------E-EECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred EEEEECCC-CCCCEEEEEECCCcccee--------------e-cCCCceeEEEecccChhcCceEEEEeE
Confidence 46899874 355678888877422211 0 012356678999999999999999754
|
| >d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.50 E-value=0.00011 Score=41.37 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=40.5
Q ss_pred CcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 102 STINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 102 ~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
+.+.|.|.+.+..++.+.+.|.++|...... .......+|.. +.+.+... .....|+|.+.++.
T Consensus 14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~----~~~~~~~~gty--s~~s~~~~--~~~~~yTC~V~H~~ 77 (86)
T d1hxma2 14 NGTNVACLVKEFYPKDIRINLVSSKKITEFD----PAIVISPSGKY--NAVKLGKY--EDSNSVTCSVQHDN 77 (86)
T ss_dssp ETTEEEEEEESCBSSCCEEEEECSSEEEECC----CEEEECTTSSE--EEEEEEEE--TTTTTCEEEEEETT
T ss_pred CCCEEEEEEeeEECCCCEEEEEECCEEccCc----EEeeeccCCcE--EEEEEEec--CCCCEEEEEEEECC
Confidence 4568999999987778889999988765321 12233334432 22333333 33447999999874
|
| >d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00015 Score=42.52 Aligned_cols=69 Identities=19% Similarity=0.304 Sum_probs=41.5
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.++.+.|.|.+.+..+..+.|.|..++....... .......++.. ..+.|.+..-... ...|+|.+.++
T Consensus 19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t---~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~ 88 (103)
T d1c5ch2 19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT---FPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHK 88 (103)
T ss_dssp ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE---CCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEG
T ss_pred CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEE---CCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeC
Confidence 4677999999998766777899976664321110 01122333332 3355666443332 35799999987
|
| >d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00035 Score=40.82 Aligned_cols=80 Identities=11% Similarity=0.158 Sum_probs=44.5
Q ss_pred eCCCceeeeCCCcEEEEeEEeeCCCC--CceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEE
Q psy13371 91 LGSPDLHVDEGSTINLTCSIKYSPEP--PAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 91 ~~~~~~~~~~g~~~~l~C~~~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C 167 (212)
..|....+..++.++|.|.+.+..+. ...+.|.+++...... .........++. ...+.|.+..-.......|+|
T Consensus 6 ~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~--~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC 83 (103)
T d1fp5a1 6 SRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNH--STRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQC 83 (103)
T ss_dssp ECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCC--CEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEE
T ss_pred eCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceeccc--EEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEE
Confidence 34443445667889999999986433 3456787777654211 001111122222 123456554333344568999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+.++
T Consensus 84 ~V~H~ 88 (103)
T d1fp5a1 84 RVTHP 88 (103)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 99987
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.39 E-value=0.00019 Score=40.90 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=36.8
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeecc--eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVGS--YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|+|++++. ...... .....++.|+... .|.+. .++...|+|.+...+
T Consensus 19 ~L~C~~~gF~P~~i~v~W~~ng~--~~~~~~~~~~~~~dgty~~~S-------~l~v~---~~~~~~ytC~V~H~s 82 (91)
T d3frua1 19 VLTCAAFSFYPPELKFRFLRNGL--ASGSGNCSTGPNGDGSFHAWS-------LLEVK---RGDEHHYQCQVEHEG 82 (91)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTE--ECCCCEEEEEECSSSCEEEEE-------EEEEE---TTCGGGEEEEEECTT
T ss_pred EEEEEEEeEECCCCEEEEEECCE--eCCccCccceecCCCCEeEEE-------EEEEC---CCCCCEEEEEEEeCC
Confidence 689999996 5 46999999873 222211 1112344454442 45543 456678999998753
|
| >d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.00011 Score=43.23 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=44.6
Q ss_pred eeeCCCcEEEEeEEeeCCC--CCceEEEEEcCeEEEeeCCCCceeEEeecCce-EEEEEEEeeeeecCCEEEEEEcccC
Q psy13371 97 HVDEGSTINLTCSIKYSPE--PPAYIFWYHHDEVISYDSSRGGVSVITEKGEV-TTSYLLIQQAELKDSGKYSCSPSNA 172 (212)
Q Consensus 97 ~~~~g~~~~l~C~~~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~ 172 (212)
.+..++.++|.|.+.+..+ ....+.|.+++......... ......++.. ..+.|.|..-.-.....|+|.+.++
T Consensus 14 ~~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~--~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~ 90 (105)
T d1l6xa1 14 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK--PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNK 90 (105)
T ss_dssp HHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEEC--CCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECT
T ss_pred hhccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEEC--CcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeC
Confidence 3556788999999987533 24678899988866321111 1122233322 3445666444334455899999987
|
| >d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.00039 Score=38.40 Aligned_cols=61 Identities=30% Similarity=0.571 Sum_probs=40.4
Q ss_pred CCCcEEEEeEEeeCCCCCceEEEEEcCeEEEeeCCCCceeEEeecCceEEEEEEEeeeee-cCCEEEEEEccc
Q psy13371 100 EGSTINLTCSIKYSPEPPAYIFWYHHDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAEL-KDSGKYSCSPSN 171 (212)
Q Consensus 100 ~g~~~~l~C~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n 171 (212)
.|..+.|+|+.. .... +.|.+++........... ...... .|.+.+.++ +++|.|.|.+..
T Consensus 9 SGTtV~LTCP~~--~~~~--i~W~~n~~~~~~~~~~~~--~~~~~~-----~l~L~dfSe~e~sGyY~C~~~~ 70 (91)
T d1xiwa_ 9 SGTTVILTCPQY--PGSE--ILWQHNDKNIGGDEDDKN--IGSDED-----HLSLKEFSELEQSGYYVCYPRG 70 (91)
T ss_dssp ETTEEEEECSSC--TTSC--EEEEETTEEESSSCSCTT--EEEETT-----EEEETTCCHHHHCEEEEEEETT
T ss_pred eCCEEEEECCCC--CCCc--eeeeeccccccCCCcccc--cccccc-----eEEecccCccccCceEEEEcCC
Confidence 488999999752 2344 999999987743322211 111222 288888766 899999998864
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=97.34 E-value=0.00041 Score=40.23 Aligned_cols=61 Identities=15% Similarity=0.338 Sum_probs=37.6
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeee---ecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILT---VGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|++++. .+.. ........|+.|.... .|.+ ..++.+.|+|++...+
T Consensus 21 tL~C~v~gFyP~~i~v~W~~ng~-~v~~~~~~t~~~~~~dgtf~~~s-------~l~v---~~~~~~~ytC~V~H~s 86 (100)
T d1muja1 21 TLICFVDNIFPPVINITWLRNSK-SVADGVYETSFFVNRDYSFHKLS-------YLTF---IPSDDDIYDCKVEHWG 86 (100)
T ss_dssp EEEEEEEEECSSCCEEEEEESSS-BCCSSEEECCCEECTTSCEEEEE-------EEEE---CCCTTCCEEEEEECTT
T ss_pred EEEEEEEeEECCCCEEEEEeCCe-eccCCceeeeeEECCCCCEEEEE-------EeEE---cCCCCCEEEEEEEECC
Confidence 589999996 4 68999999773 2211 1111223344555543 3444 3456778999999864
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00058 Score=39.05 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=37.6
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCCce
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQPVR 75 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 75 (212)
+++.|.++........|.+.+ ....+.+. .+... ....++|.+++..++|.|.|++..++..
T Consensus 23 ~vIPC~vT~P~~~VtL~~~~~-~~~~p~g~-------~v~~D-----pk~Gf~I~~~~~~~~g~y~C~a~~~g~~ 84 (95)
T d1fltx_ 23 LVIPCRVTSPNITVTLKKFPL-DTLIPDGK-------RIIWD-----SRKGFIISNATYKEIGLLTCEATVNGHL 84 (95)
T ss_dssp EEECCCBSCTTSCCEEEETTT-EEECCCSS-------SEEEE-----TTTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred EEEEccCCCCCceeEEEeccC-CccCCCCC-------EEEEC-----CCCCEEEeCCCcccCeEEEEEEEECCEE
Confidence 368899987655444454333 23333221 11111 1225778999999999999999876533
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.23 E-value=0.00051 Score=39.76 Aligned_cols=60 Identities=7% Similarity=0.264 Sum_probs=36.3
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeee---cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTV---GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|+|++++. .+.. .......++.|.... .|.+ ..++.+.|+|.+....
T Consensus 22 tL~C~v~gf~P~~i~V~W~~~g~--~~~~~~~~~~~~~~dgtf~~~s-------~l~v---~~~~~~~ytC~V~H~s 86 (99)
T d1lk2b_ 22 ILNCYVTQFHPPHIEIQMLKNGK--KIPKVEMSDMSFSKDWSFYILA-------HTEF---TPTETDTYACRVKHDS 86 (99)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTE--ECTTCEEEEEEECTTCCEEEEE-------EEEE---CCCSSCCEEEEEECTT
T ss_pred EEEEEEEEEECCCcEEEEeeCCe--ecCCcEECceeECCCCCEEEEE-------EeEe---cCcCCCEEEEEEEeCC
Confidence 589999996 4 46899999873 2211 111222334444432 3444 4556678999998753
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.0018 Score=36.92 Aligned_cols=69 Identities=17% Similarity=0.339 Sum_probs=44.9
Q ss_pred ceeeeCCCcEEEEeEEeeCCCCCceEEEEE-cCeEEEeeCCCCceeEEeecCceEEEEEEEeeeeecCCEEEEEEcccCC
Q psy13371 95 DLHVDEGSTINLTCSIKYSPEPPAYIFWYH-HDEVISYDSSRGGVSVITEKGEVTTSYLLIQQAELKDSGKYSCSPSNAD 173 (212)
Q Consensus 95 ~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 173 (212)
-..+.+|+++.+.|.++ + |.+++.-.+ .+..+.. .+.......... +.|.+....+.|.|.|.|....
T Consensus 14 ~V~v~eg~~~vIPC~vT-~--P~~~VtL~~~~~~~~~p---~g~~v~~Dpk~G-----f~I~~~~~~~~g~y~C~a~~~g 82 (95)
T d1fltx_ 14 IIHMTEGRELVIPCRVT-S--PNITVTLKKFPLDTLIP---DGKRIIWDSRKG-----FIISNATYKEIGLLTCEATVNG 82 (95)
T ss_dssp EEEECTTSCEEECCCBS-C--TTSCCEEEETTTEEECC---CSSSEEEETTTE-----EEESSCCGGGCEEEEEEEEETT
T ss_pred EEEEeCCCCEEEEccCC-C--CCceeEEEeccCCccCC---CCCEEEECCCCC-----EEEeCCCcccCeEEEEEEEECC
Confidence 35688999999999996 3 444454433 5554421 111222222222 8999999999999999998664
Q ss_pred e
Q psy13371 174 V 174 (212)
Q Consensus 174 ~ 174 (212)
.
T Consensus 83 ~ 83 (95)
T d1fltx_ 83 H 83 (95)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.00075 Score=38.61 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=34.9
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeec---cee-eecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVG---SYT-YTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~---~~~-~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|+|++++. .+.... ... ...++.|.... .|. +...+...|+|.+.+.+
T Consensus 19 tL~C~~~gFyP~~i~v~W~~dg~-~~~~~~~~~~~~~~~~~~t~~~~s-------~l~---v~~~~~~~ytC~V~H~s 85 (94)
T d1de4a1 19 TLRCRALNYYPQNITMKWLKDKQ-PMDAKEFEPKDVLPNGDGTYQGWI-------TLA---VPPGEEQRYTCQVEHPG 85 (94)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTE-ECCGGGSCCCEEEECTTSCEEEEE-------EEE---ECTTCGGGEEEEEECTT
T ss_pred EEEEEEeeEECCCCEEEEEECCE-ECccCcccccceEeCCCceEEEEE-------EEE---ECCCCCCEEEEEEEeCC
Confidence 589999994 5 56999999873 221111 011 11122333321 333 34456678999998853
|
| >d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.0012 Score=37.11 Aligned_cols=67 Identities=18% Similarity=0.333 Sum_probs=44.0
Q ss_pred ceEEEEeeCc-ceeee--ecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC-C--ceeEEEEEEEe
Q psy13371 13 TRVSWIRHRD-IHILT--VGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ-P--VRSFFVNLNVV 84 (212)
Q Consensus 13 ~~v~W~~~~~-~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~--~~~~~~~l~v~ 84 (212)
-.|.|-|..+ ..+-. .+.......+.+.+. .+++|+|..+.++|+|.|.-.+++. + .....+.|.|.
T Consensus 28 ddIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~-----~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~ 100 (101)
T d1hnfa1 28 DDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF-----KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ 100 (101)
T ss_dssp EEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC-----TTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred ceeEEEecCCCcceeeecccCCCCCCCceEEEc-----cCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence 4899998432 12222 133344445567776 5679999999999999999999875 2 23445555554
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.12 E-value=0.0023 Score=36.66 Aligned_cols=60 Identities=15% Similarity=0.042 Sum_probs=36.8
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
|.|.|... .....+.++|++......... .........+.+.|.+++.+|+|.|.|....
T Consensus 19 VTl~C~~~-~~~~~f~L~keg~~~~~~~~~----------~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~ 78 (96)
T d1nkra1 19 VILQCWSD-VMFEHFLLHREGMFNDTLRLI----------GEHHDGVSKANFSISRMTQDLAGTYRCYGSV 78 (96)
T ss_dssp EEEEEEES-SCCSEEEEEEESSSCEEEEEE----------CEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred EEEEECCC-CCCCEEEEEECCCcCCceeee----------eeecCCceEEEEEEcccCcccCeEEEEEEEc
Confidence 46889865 345577778876422111000 0001122345789999999999999998764
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.00037 Score=40.85 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=40.2
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeecc-----eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVGS-----YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
.|.|.+.|. | ...|.|++++. ....+. .....++.|+... .|.|..-.-.+...|+|++.+.
T Consensus 23 tL~Clv~~f~P~~i~v~W~~~g~--~~~~~~~~~~~~~~~~~gtys~~S-------~L~v~~~~W~~g~~ytC~V~H~ 91 (105)
T d1fp5a2 23 TLACLIQNFMPEDISVQWLHNEV--QLPDARHSTTQPRKTKGSGFFVFS-------RLEVTRAEWEQKDEFICRAVHE 91 (105)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTE--ECCGGGEEECCCEECSSSCEEEEE-------EEEECHHHHTTGGGEEEEEECT
T ss_pred EEEEEEEeeeCCCcEEEEEECCE--ECCCceeEeeeeEecCCCCEEEEE-------EEEECHHHcCCCCEEEEEEEEC
Confidence 589999995 5 57999998773 222111 1223445666653 5777666555556799999874
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=97.11 E-value=0.00037 Score=40.09 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=36.4
Q ss_pred CeeEeeeCCC-CC-ceEEEEeeCcceeeee--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCC
Q psy13371 1 MLHQRKLKGL-LP-TRVSWIRHRDIHILTV--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQ 72 (212)
Q Consensus 1 ~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 72 (212)
+.|.|.+.|. |. ..|.|++++. ..... .......++.|.... .|.+.. +|...|+|.+.+.
T Consensus 19 vtL~C~a~gF~P~~i~v~W~~~~~-~~~~~~~~~~~~~~dgty~~~S-------~L~v~~---~~~~~ytC~V~H~ 83 (96)
T d2h26a1 19 LQLVCHVSGFYPKPVWVMWMRGEQ-EQQGTQLGDILPNANWTWYLRA-------TLDVAD---GEAAGLSCRVKHS 83 (96)
T ss_dssp EEEEEEEEEEBSSCEEEEEEETTE-ECTTCEECCCEECTTSCEEEEE-------EEEEEG---GGCTTEEEEEEEG
T ss_pred EEEEEEEEEEECCCcEEEEEECcc-cCCCceeCccEeCCCCcEEEEE-------EEEEeC---ccCCEEEEEEEeC
Confidence 3689999995 64 4999999763 21110 111223345555543 455543 4556799999875
|
| >d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=6.3e-06 Score=48.43 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=45.0
Q ss_pred eeCCCceeeeCCCcEEEEeEEeeC-CCCCceEEEEEcCeEEEeeCCCCceeEEeecCc-eEEEEEEEeeeeecCCEEEEE
Q psy13371 90 ILGSPDLHVDEGSTINLTCSIKYS-PEPPAYIFWYHHDEVISYDSSRGGVSVITEKGE-VTTSYLLIQQAELKDSGKYSC 167 (212)
Q Consensus 90 ~~~~~~~~~~~g~~~~l~C~~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C 167 (212)
+..|....+..++.++|.|.+.+. ++..+.|.|.+++......... ....+|. ...+.|.+..-..+....|+|
T Consensus 7 l~~Ps~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~----~~~~~gt~s~~S~L~v~~~~W~~g~~ftC 82 (101)
T d1ow0a1 7 LHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPP----ERDLCGCYSVSSVLPGCAEPWNHGKTFTC 82 (101)
T ss_dssp EECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCC----CCCSTTCCCEEEECTTTHHHHHHTCEEEE
T ss_pred EECCCHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecce----EECCCCCEEEEEEEEEcHHHcCCCCeEEE
Confidence 333443445567899999999875 3345679998876533211111 1122232 223445444333334569999
Q ss_pred EcccC
Q psy13371 168 SPSNA 172 (212)
Q Consensus 168 ~~~n~ 172 (212)
.+.+.
T Consensus 83 ~V~H~ 87 (101)
T d1ow0a1 83 TAAYP 87 (101)
T ss_dssp EECCS
T ss_pred EEEeC
Confidence 99986
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.04 E-value=0.0023 Score=36.82 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=35.3
Q ss_pred CeeEeeeCCCCCceEEEEeeCcceeeeecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecC
Q psy13371 1 MLHQRKLKGLLPTRVSWIRHRDIHILTVGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLST 71 (212)
Q Consensus 1 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 71 (212)
|.|.|...- +...+.|+|++........ ..........+.|..+...|+|.|.|....
T Consensus 23 VTL~C~~~~-~~~~f~L~k~g~~~~~~~~------------~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~ 80 (99)
T d1nkra2 23 VTLSCSSRS-SYDMYHLSREGEAHERRLP------------AGPKVNGTFQADFPLGPATHGGTYRCFGSF 80 (99)
T ss_dssp EEEEEEESS-CCSEEEEEETTCSSCEEEE------------CEEEETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred EEEEECCCC-CccEEEEEECCCccccEEE------------ccccCCccEEEEEeccccccCEEEEEEeec
Confidence 468998654 4567888887642211100 000122344567778888999999997654
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=97.02 E-value=0.00067 Score=39.15 Aligned_cols=60 Identities=23% Similarity=0.402 Sum_probs=36.3
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|++++. ....+ ......++.|+... .| .+..++.+.|+|.+...+
T Consensus 22 tL~C~v~~F~P~~i~v~W~~~g~--~~~~~~~~~~~~~~~dgtf~~~s-------~l---~~~~~~~~~ytC~V~H~s 87 (98)
T d1d5mb1 22 LLVCSVNGFYPGSIEVRWFRNGQ--EEKTGVVSTGLIQNGDWTFQTLV-------ML---ETVPRSGEVYTCQVEHPS 87 (98)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTE--ECCSSEEECCCEECSSSCEEEEE-------EE---ECCCCTTCEEEEEEECTT
T ss_pred EEEEEEeeeECCCcEEEEEECCE--EcCCCCEECeEEeCCCcEEEEEE-------Ee---eEcCCCCCEEEEEEEECC
Confidence 589999995 4 46999999763 22111 11122233444332 23 445677789999998854
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=97.01 E-value=0.00043 Score=40.35 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=40.0
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeee-ecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILT-VGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|.+++...... ........++.|+..+ .|.|..-.-.....|+|.+.+.+
T Consensus 23 tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S-------~L~v~~~~W~~~~~ytC~V~H~~ 90 (102)
T d1igtb4 23 TLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYS-------KLRVEKKNWVERNSYSCSVVHEG 90 (102)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEE-------EEEEEHHHHHTCCCEEEEEECTT
T ss_pred EEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEE-------EEEECHHHcCCCCEEEEEEEeCC
Confidence 589999995 5 4799999977311111 1112223456666653 57765554444557999998754
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.00 E-value=0.00078 Score=39.10 Aligned_cols=64 Identities=8% Similarity=0.141 Sum_probs=40.0
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeee-e-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILT-V-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~-~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|++++. .... . .......++.|+... .|.|..-.-.....|+|++...+
T Consensus 22 tL~C~v~~f~P~~i~v~W~~~g~-~~~~~~~~~~~~~~dgtys~~S-------~L~v~~~~w~~~~~ytC~V~H~~ 89 (101)
T d1cqka_ 22 SLTCMITDFFPEDITVEWQWNGQ-PAENYKNTQPIMDTDGSYFVYS-------KLNVQKSNWEAGNTFTCSVLHEG 89 (101)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTE-ECCSEEECCCEECTTSCEEEEE-------EEEEEHHHHHTTCCEEEEEECTT
T ss_pred EEEEEEEEeECCCcEEEEEECCE-EccCcEEeeeecCCCCcEEEEE-------EEEECHHHhCCCCEEEEEEEECC
Confidence 589999995 5 57999998773 2111 1 111233455666653 56665554445567999998754
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.0014 Score=37.95 Aligned_cols=61 Identities=11% Similarity=0.277 Sum_probs=36.7
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeee--ecceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILT--VGSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|.+++. .+.. ........|+.|.... .|.+ ..++.+.|+|.+...+
T Consensus 23 tL~C~~~gFyP~~i~v~W~~ng~-~v~~~~~~~~~~~~dgty~~~s-------~l~v---~~~~~~~ytC~V~H~s 87 (100)
T d1k5nb_ 23 FLNCYVSGFHPSDIEVDLLKNGE-RIEKVEHSDLSFSKDWSFYLLY-------YTEF---TPTEKDEYACRVNHVT 87 (100)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTE-ECTTCEECCCEECTTSCEEEEE-------EEEE---CCCSSCCEEEEEECTT
T ss_pred EEEEEECccCCCCcEEEEEECCE-ecCCccccceecCCCCcEEEEE-------EeEE---CCCCCCEEEEEEEeCC
Confidence 589999996 4 56999999773 2211 1111222334444432 3444 4566778999998854
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=96.99 E-value=0.0019 Score=37.38 Aligned_cols=60 Identities=18% Similarity=0.363 Sum_probs=36.8
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|+ | ...|.|++++. .+..+ ......++.|.... .|.+. .++...|+|.+...+
T Consensus 23 tL~C~v~gF~P~~i~v~W~~ng~--~~~~~~~~~~~~~~~dgty~~~S-------~L~v~---~~~~~~ytC~V~H~s 88 (101)
T d1fnga1 23 ILICFIDKFSPPVVNVTWLRNGR--PVTEGVSETVFLPRDDHLFRKFH-------YLTFL---PSTDDFYDCEVDHWG 88 (101)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTE--EECSSEEECCCEECSSSCEEEEE-------EEEEC---CCTTCCEEEEEECTT
T ss_pred EEEEEEEeEECCCCEEEEEECCe--ecCCCcEeCeEEECCCCcEEEEE-------EeEEc---CCCCCEEEEEEEECC
Confidence 589999997 5 56999999773 22211 11122344555543 45553 345568999998753
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.00062 Score=39.78 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=38.5
Q ss_pred eeEeeeCCC-CC-ceEEEEeeCcceeeeec---ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-LP-TRVSWIRHRDIHILTVG---SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~---~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. |. ..|.|++++. ....+ ......++.|.... .|.|..-.......|+|++.+.+
T Consensus 25 ~L~Cl~~~f~P~~i~v~W~~~g~--~~~~~~~~~~~~~~~~~y~~~S-------~L~v~~~~w~~~~~ytC~V~H~~ 92 (104)
T d1o0va1 25 QLLCLVSGYTPGTIQITWLEDGQ--VMDVDLSTASTTQEGELASTQS-------ELTLSQKHWLSDRTYTCQVTYQG 92 (104)
T ss_dssp EEEEEEEEECCCCEEEEEEETTE--ECCGGGEEEEEEEETTEEEEEE-------EEEEEHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEEEEECCCcEEEEEECCE--EccCCceeeeEeCCCCeEEEEE-------EEEECHHHcCCCCEEEEEEEECC
Confidence 488999994 54 4899999773 22211 11222344555543 56776554445567999998864
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=96.96 E-value=0.0017 Score=37.47 Aligned_cols=60 Identities=18% Similarity=0.358 Sum_probs=36.1
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeec----ceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVG----SYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|+|++++. .+..+ ......|+.|.... .|.+. .++...|+|.+...+
T Consensus 23 tL~C~~~gFyP~~i~v~W~~ng~--~~~~~~~~~~~~~~~dgtf~~~s-------~l~v~---~~~~~~ytC~V~H~s 88 (99)
T d1uvqa1 23 TLICLVDNIFPPVVNITWLSNGQ--SVTEGVSETSFLSKSDHSFFKIS-------YLTFL---PSADEIYDCKVEHWG 88 (99)
T ss_dssp EEEEEEEEECSSCCEEEEEETTE--EECTTEEECCCEECTTSCEEEEE-------EEEEC---CCTTCCEEEEEECTT
T ss_pred EEEEEEEEEECCCCEEEEEECCE--eccCCcEecceEECCCCCEEEEE-------EEEEc---CCCCCEEEEEEEeCC
Confidence 489999996 4 57899999773 22211 11122234444432 35543 355668999998753
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.94 E-value=0.001 Score=38.63 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=40.4
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeee-e-cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILT-V-GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~-~-~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|.+++. .... . .......++.|.... .|.|..-...+...|+|++...+
T Consensus 23 ~L~C~v~~f~P~~i~v~W~~~g~-~~~~~~~~~~~~~~dgt~s~~S-------~L~v~~~~w~~~~~ytC~V~H~~ 90 (102)
T d1i1ca2 23 SITCMVKGFYPPDIYTEWKMNGQ-PQENYKNTPPTMDTDGSYFLYS-------KLNVKKETWQQGNTFTCSVLHEG 90 (102)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTE-ECSSEEECCCEECTTSCEEEEE-------EEEEEHHHHHTTCCEEEEEECTT
T ss_pred EEEEEEEEEECCCCEEEEEECCe-eccCcEEcccEeCCCCCEEEEE-------EEEECHHHhCCCCEEEEEEEeCC
Confidence 589999996 4 46899999874 2111 1 111223355666553 57776655555567999998754
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.0011 Score=38.54 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=40.9
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeee-e--cceeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILT-V--GSYTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~-~--~~~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|++++. .+.. . .......++.|.... .|.|..-.-.....|+|++.+.+
T Consensus 24 tl~C~v~~f~P~~i~v~W~~~g~-~~~~~~~t~~~~~~~dgtys~~S-------~L~v~~~~w~~~~~ytC~V~H~~ 92 (102)
T d1q0xl2 24 TLVCTITDFYPGVVTVDWKVDGT-PVTAGMETTQPSKQSNNKYMASS-------YLTLTARAWERHSSYSCQVTHEG 92 (102)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTE-EECTTEEECCCEECTTSCEEEEE-------EEEEEHHHHTTCCEEEEEEEETT
T ss_pred EEEEEEeeeeCCCCEEEEEECCE-ECCCCeEecccEEcCCCCEEEEE-------EEEECHHHhCCCCEEEEEEEECC
Confidence 589999997 4 46899998763 2211 1 111223456666654 57776665555678999998754
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.86 E-value=0.00075 Score=39.64 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=39.1
Q ss_pred eeEeeeCCC-C-CceEEEEeeCcceeeeecc-----eeeecCCceEEEeeCCCCeEEEEEcccCCCCCEEEEEEecCCC
Q psy13371 2 LHQRKLKGL-L-PTRVSWIRHRDIHILTVGS-----YTYTSDQRFSAIHRREGDEWTLHIKWAQKRDAGVYECQLSTQP 73 (212)
Q Consensus 2 ~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 73 (212)
.|.|.+.|. | ...|.|.+++. ....+. .....++.|...+ .|.|..-.......|+|.+.+.+
T Consensus 24 tL~Cl~~~f~P~~i~v~W~~ng~--~~~~~~~~~~~~~~~~dgtys~~S-------~L~v~~~~W~~g~~ytC~V~H~~ 93 (107)
T d1mjul2 24 SVVCFLNNFYPKDINVKWKIDGS--ERQNGVLNSWTDQDSKDSTYSMSS-------TLTLTKDEYERHNSYTCEATHKT 93 (107)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTE--EECTTEEEEECCCCTTTCCEEEEE-------EEEEEHHHHHTCCEEEEEEECTT
T ss_pred EEEEEEEEeECCCCEEEEEECCE--EccCCeEeccccEecCCCCEEEEE-------EEEECHHHhCCCCEEEEEEEECC
Confidence 589999996 4 46899998763 222111 1112345666653 56666555444567999998753
|