Psyllid ID: psy13383

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRENFENSDLRPQSNFFAVFTIGEVSLL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHEEEEEccccccccccccccccccEEEEEEEcEEEcc
Coil and Loop (DISEMBL)
mewlfgrkitpeEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIvgpenrenfensdlrpqsnfFAVFTIGEVSLL
Flexible Loop (DISEMBL)
mewlfgrkitpeemlrkNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRENfensdlrpqsnffavftigevsll
Low Complexity Region (SEG)
MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRENFENSDLRPQSNFFAVFTIGEVSLL
Disordered region (IsUnstruct)
*********************************************************LSTERHVALLLEFVIIVGPE*************SNFFAVFTIGE****
Disordered Region (DISOPRED)
**W*****************************************************TLSTERHVALLLEFVII***********************FTIGEVSLL
Disordered Region (DISEMBL)
MEWLFGRKITPEEMLRKNQRALNKAMRDL***********KKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRENFENSDLRPQSNFFAVFTIGEVSLL
Disordered Region (DISPRO)
*EW*FGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENR*NFENSDLRPQSNFFAVFTIGEVSLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEWLFGRKITPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGQMTLSTERHVALLLEFVIIVGPENRENFENSDLRPQSNFFAVFTIGEVSLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q7ZW25	220	Charged multivesicular bo	yes	N/A	0.533	0.254	0.821	1e-20
Q6DFS6	220	Charged multivesicular bo	yes	N/A	0.533	0.254	0.803	3e-20
Q6IP52	220	Charged multivesicular bo	N/A	N/A	0.533	0.254	0.785	7e-20
O43633	222	Charged multivesicular bo	yes	N/A	0.533	0.252	0.75	1e-18
Q9DB34	222	Charged multivesicular bo	yes	N/A	0.533	0.252	0.75	2e-18
Q54DB1	198	Charged multivesicular bo	yes	N/A	0.514	0.272	0.629	1e-13
P36108	232	DOA4-independent degradat	yes	N/A	0.552	0.25	0.534	2e-12
Q5ZHN1	220	Charged multivesicular bo	yes	N/A	0.533	0.254	0.714	5e-12
Q9SKI2	225	Vacuolar protein sorting-	yes	N/A	0.533	0.248	0.535	4e-11
O14177	210	ESCRT-III complex subunit	yes	N/A	0.495	0.247	0.5	4e-08

>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 53/56 (94%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          ME LFGR+ TPEEMLR+NQRALN+AMRDLDRE+Q +EQQEKK+IADIKKMAK+GQM
Sbjct: 1  MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQM 56

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.
Danio rerio (taxid: 7955)

>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/56 (80%), Positives = 54/56 (96%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          ME+LFGR+ TPEEMLR+NQRALNKAMR++DRE+Q +EQQEKK+IADIKKMAK+GQM
Sbjct: 1  MEFLFGRRKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQM 56

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus tropicalis (taxid: 8364)

>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1

 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 54/56 (96%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          ME+LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +EQQEKK+IADIKKMAK+GQM
Sbjct: 1  MEFLFGRRKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQM 56

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/56 (75%), Positives = 52/56 (92%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM
Sbjct: 1  MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQM 56

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in HIV-1 p6- and p9-dependent virus release.

Homo sapiens (taxid: 9606)

>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/56 (75%), Positives = 52/56 (92%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM
Sbjct: 1  MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQM 56

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Mus musculus (taxid: 10090)

>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 48/54 (88%)

Query: 3  WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          +LFG++ TP+E+LR+NQR LNK+MR++DRE+  ++ QEKK+I DIKKMAK+GQM
Sbjct: 2  FLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQM 55

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 47/58 (81%)

Query: 2  EWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLS 59
          EW+FG+ +TP+E L+KNQRAL +  R+L+REK+ +E Q+KKL+++IKK AK GQ+  +
Sbjct: 5  EWVFGKNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAA 62

Required for the sorting and concentration of proteins resulting in the entry of these proteins into the invaginating vesicles of the multivesicular body (MVB). Acts a component of the ESCRT-III complex, which appears to be critical for late steps in MVB sorting, such as membrane invagination and final cargo sorting and recruitment of late-acting components of the sorting machinery. The MVB pathway requires the sequential function of ESCRT-O, -I,-II and -III complex assemblies. Can directly stimulate VPS4 ATPase activity. The DID4/VPS2-VPS24 subcomplex is required for the VPS4-dependent dissociation of ESCRT-III.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 50/56 (89%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          M+ LFGR+ TPEE+LR+NQRAL +AMR+LDRE+Q +E QEKK+I DIKKMAK+GQM
Sbjct: 1  MDLLFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQM 56

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Gallus gallus (taxid: 9031)

>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 47/56 (83%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          M  +FG++ TP E+LR+N+R L+K++R+++RE+Q ++ QEKKLI +IKK AK+GQM
Sbjct: 2  MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQM 57

Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-III complex is probably involved in the concentration of MVB cargo.

Arabidopsis thaliana (taxid: 3702)

>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=did4 PE=3 SV=2

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 38/52 (73%)

Query: 3  WLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEG 54
          WLFG   +P+E LR +QR+L +A R+LDRE+  ++Q+E+ LI +IK  AK G
Sbjct: 6  WLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAG 57

Required for the sorting and concentration of proteins resulting in the entry of these proteins into the invaginating vesicles of the multivesicular body (MVB). Acts a component of the ESCRT-III complex, which appears to be critical for late steps in MVB sorting, such as membrane invagination and final cargo sorting and recruitment of late-acting components of the sorting machinery. The MVB pathway requires the sequential function of ESCRT-O, -I,-II and -III complex assemblies.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
322790209	228	hypothetical protein SINV_04238 [Solenop	0.533	0.245	0.892	1e-21
289741155	243	vacuolar assembly/sorting protein DID4 [	0.533	0.230	0.875	3e-21
307175574	227	Charged multivesicular body protein 2a [	0.533	0.246	0.875	4e-21
332019427	228	Charged multivesicular body protein 2a [	0.533	0.245	0.875	4e-21
66509926	227	PREDICTED: charged multivesicular body p	0.533	0.246	0.857	6e-21
380025498	227	PREDICTED: charged multivesicular body p	0.533	0.246	0.857	6e-21
383857259	227	PREDICTED: charged multivesicular body p	0.533	0.246	0.857	6e-21
195454116	251	GK14462 [Drosophila willistoni] gi|19417	0.533	0.223	0.857	6e-21
195349629	256	GM10303 [Drosophila sechellia] gi|194123	0.533	0.218	0.857	7e-21
195151933	256	GL21825 [Drosophila persimilis] gi|19411	0.533	0.218	0.857	7e-21

>gi|322790209|gb|EFZ15208.1| hypothetical protein SINV_04238 [Solenopsis invicta]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 54/56 (96%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          MEWLFG++ITPEEMLRKNQRALNKAMRDLDREK  MEQQEKK+IADIKK+AKEGQM
Sbjct: 1  MEWLFGKRITPEEMLRKNQRALNKAMRDLDREKMRMEQQEKKIIADIKKLAKEGQM 56

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741155|gb|ADD19325.1| vacuolar assembly/sorting protein DID4 [Glossina morsitans morsitans]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/56 (87%), Positives = 54/56 (96%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          M+WLFG+KI+P+EMLRKNQRALNKAMRDLDREK  MEQQEKK+IADIKKMAKEGQM
Sbjct: 1  MDWLFGKKISPDEMLRKNQRALNKAMRDLDREKMKMEQQEKKIIADIKKMAKEGQM 56

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175574|gb|EFN65486.1| Charged multivesicular body protein 2a [Camponotus floridanus]

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/56 (87%), Positives = 54/56 (96%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          MEWLFG++ITPEEMLRKNQRALNKAMRDLDREK  MEQQEKK+IADIKK+AK+GQM
Sbjct: 1  MEWLFGKRITPEEMLRKNQRALNKAMRDLDREKVRMEQQEKKIIADIKKLAKDGQM 56

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019427|gb|EGI59911.1| Charged multivesicular body protein 2a [Acromyrmex echinatior]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/56 (87%), Positives = 54/56 (96%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          MEWLFG++ITPEEMLRKNQRALNKAMRDLDREK  MEQQEKK+IADIKK+AK+GQM
Sbjct: 1  MEWLFGKRITPEEMLRKNQRALNKAMRDLDREKVRMEQQEKKIIADIKKLAKDGQM 56

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66509926|ref|XP_625164.1| PREDICTED: charged multivesicular body protein 2a-like [Apis mellifera]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/56 (85%), Positives = 54/56 (96%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          MEWLFG++ITPEEMLRKNQRALNKAMRDLDRE+  MEQQEKK+IADIKK+AK+GQM
Sbjct: 1  MEWLFGKRITPEEMLRKNQRALNKAMRDLDRERMRMEQQEKKIIADIKKLAKDGQM 56

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025498|ref|XP_003696510.1| PREDICTED: charged multivesicular body protein 2a-like [Apis florea]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/56 (85%), Positives = 54/56 (96%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          MEWLFG++ITPEEMLRKNQRALNKAMRDLDRE+  MEQQEKK+IADIKK+AK+GQM
Sbjct: 1  MEWLFGKRITPEEMLRKNQRALNKAMRDLDRERMRMEQQEKKIIADIKKLAKDGQM 56

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857259|ref|XP_003704122.1| PREDICTED: charged multivesicular body protein 2a-like [Megachile rotundata]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/56 (85%), Positives = 54/56 (96%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          MEWLFG++ITPEEMLRKNQRALNKAMRDLDRE+  MEQQEKK+IADIKK+AK+GQM
Sbjct: 1  MEWLFGKRITPEEMLRKNQRALNKAMRDLDRERMRMEQQEKKIIADIKKLAKDGQM 56

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195454116|ref|XP_002074094.1| GK14462 [Drosophila willistoni] gi|194170179|gb|EDW85080.1| GK14462 [Drosophila willistoni]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/56 (85%), Positives = 54/56 (96%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          M+WLFG+KI+P+EMLRKNQRALNKAMRDLDRE+  MEQQEKK+IADIKKMAKEGQM
Sbjct: 1  MDWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKMAKEGQM 56

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195349629|ref|XP_002041345.1| GM10303 [Drosophila sechellia] gi|194123040|gb|EDW45083.1| GM10303 [Drosophila sechellia]

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/56 (85%), Positives = 54/56 (96%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          M+WLFG+KI+P+EMLRKNQRALNKAMRDLDRE+  MEQQEKK+IADIKKMAKEGQM
Sbjct: 1  MDWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKMAKEGQM 56

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195151933|ref|XP_002016893.1| GL21825 [Drosophila persimilis] gi|194111950|gb|EDW33993.1| GL21825 [Drosophila persimilis]

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/56 (85%), Positives = 54/56 (96%)

Query: 1  MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          M+WLFG+KI+P+EMLRKNQRALNKAMRDLDRE+  MEQQEKK+IADIKKMAKEGQM
Sbjct: 1  MDWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKMAKEGQM 56

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
FB|FBgn0039402	256	vps2 "vps2" [Drosophila melano	0.533	0.218	0.857	7e-22
ZFIN|ZDB-GENE-040426-2922	220	bc2 "putative breast adenocarc	0.533	0.254	0.821	5.7e-20
UNIPROTKB|Q3T0U5	222	CHMP2A "Chromatin modifying pr	0.533	0.252	0.75	2.8e-18
UNIPROTKB|E2RIU2	222	CHMP2A "Uncharacterized protei	0.533	0.252	0.75	2.8e-18
UNIPROTKB|O43633	222	CHMP2A "Charged multivesicular	0.533	0.252	0.75	2.8e-18
MGI|MGI:1916203	222	Chmp2a "charged multivesicular	0.533	0.252	0.75	2.8e-18
RGD|1305050	222	Chmp2a "charged multivesicular	0.533	0.252	0.75	2.8e-18
UNIPROTKB|Q5ZHN1	220	CHMP2A "Charged multivesicular	0.533	0.254	0.714	4.1e-17
WB|WBGene00012903	237	vps-2 [Caenorhabditis elegans	0.533	0.236	0.696	2.9e-16
CGD|CAL0003689	235	VPS2 [Candida albicans (taxid:	0.533	0.238	0.642	3.3e-15

FB|FBgn0039402 vps2 "vps2" [Drosophila melanogaster (taxid:7227)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 48/56 (85%), Positives = 54/56 (96%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
             M+WLFG+KI+P+EMLRKNQRALNKAMRDLDRE+  MEQQEKK+IADIKKMAKEGQM
Sbjct:     1 MDWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKMAKEGQM 56

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-040426-2922 bc2 "putative breast adenocarcinoma marker" [Danio rerio (taxid:7955)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 46/56 (82%), Positives = 53/56 (94%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
             ME LFGR+ TPEEMLR+NQRALN+AMRDLDRE+Q +EQQEKK+IADIKKMAK+GQM
Sbjct:     1 MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQM 56

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|Q3T0U5 CHMP2A "Chromatin modifying protein 2A" [Bos taurus (taxid:9913)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 42/56 (75%), Positives = 52/56 (92%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
             M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQM 56

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E2RIU2 CHMP2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 42/56 (75%), Positives = 52/56 (92%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
             M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQM 56

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|O43633 CHMP2A "Charged multivesicular body protein 2a" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 42/56 (75%), Positives = 52/56 (92%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
             M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQM 56

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

MGI|MGI:1916203 Chmp2a "charged multivesicular body protein 2A" [Mus musculus (taxid:10090)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 42/56 (75%), Positives = 52/56 (92%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
             M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQM 56

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

RGD|1305050 Chmp2a "charged multivesicular body protein 2A" [Rattus norvegicus (taxid:10116)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 42/56 (75%), Positives = 52/56 (92%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
             M+ LFGR+ TPEE+LR+NQRALN+AMR+LDRE+Q +E QEKK+IADIKKMAK+GQM
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQM 56

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

UNIPROTKB|Q5ZHN1 CHMP2A "Charged multivesicular body protein 2a" [Gallus gallus (taxid:9031)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/56 (71%), Positives = 50/56 (89%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
             M+ LFGR+ TPEE+LR+NQRAL +AMR+LDRE+Q +E QEKK+I DIKKMAK+GQM
Sbjct:     1 MDLLFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQM 56

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

WB|WBGene00012903 vps-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 39/56 (69%), Positives = 49/56 (87%)

Query:     1 MEWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
             M++LFGR+ TP E+LR+NQRALNKA+R+LDRE+  ME QEKK+IADIK MAK+ QM
Sbjct:     1 MDFLFGRRKTPAELLRQNQRALNKAIRELDRERARMEAQEKKVIADIKNMAKKNQM 56

GO:0015031 "protein transport" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

CGD|CAL0003689 VPS2 [Candida albicans (taxid:5476)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 36/56 (64%), Positives = 45/56 (80%)

Query:     2 EWLFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMT 57
             EW FG+K+TP+E LRKNQRAL K  R+L RE   ++QQEKKLI+DIKK AK GQ++
Sbjct:     6 EWAFGKKLTPQERLRKNQRALEKTQRELSREITKLQQQEKKLISDIKKSAKSGQIS 61

GO:0003674 "molecular_function" evidence=ND

GO:0006623 "protein targeting to vacuole" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0045053 "protein retention in Golgi apparatus" evidence=IEA

GO:0070676 "intralumenal vesicle formation" evidence=IEA

GO:0043328 "protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DFS6	CHM2A_XENTR	No assigned EC number	0.8035	0.5333	0.2545	yes	N/A
Q9DB34	CHM2A_MOUSE	No assigned EC number	0.75	0.5333	0.2522	yes	N/A
P36108	DID4_YEAST	No assigned EC number	0.5344	0.5523	0.25	yes	N/A
O43633	CHM2A_HUMAN	No assigned EC number	0.75	0.5333	0.2522	yes	N/A
Q5ZHN1	CHM2A_CHICK	No assigned EC number	0.7142	0.5333	0.2545	yes	N/A
Q9SKI2	VPS2A_ARATH	No assigned EC number	0.5357	0.5333	0.2488	yes	N/A
Q7ZW25	CHM2A_DANRE	No assigned EC number	0.8214	0.5333	0.2545	yes	N/A
Q54DB1	CM2A2_DICDI	No assigned EC number	0.6296	0.5142	0.2727	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	105
pfam03357	169	pfam03357, Snf7, Snf7	1e-06

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 17/40 (42%), Positives = 31/40 (77%)

Query: 17 KNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          +   +L KA+R+LD++++ +E++ KKL A+IKK+AK+G  
Sbjct: 1  EAILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNK 40

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	5e-10
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	1e-09

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score = 52.4 bits (125), Expect = 5e-10
 Identities = 14/49 (28%), Positives = 31/49 (63%)

Query: 8  KITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
          +  P+E++ +    + K MR +DR+ + ++++E+K+   +K  AK+GQ 
Sbjct: 5  EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQK 53

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score = 52.1 bits (124), Expect = 1e-09
 Identities = 14/51 (27%), Positives = 32/51 (62%)

Query: 6  GRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQM 56
           ++  P+E++ +    + K MR +DR+ + ++++E+K+   +K  AK+GQ 
Sbjct: 3  MQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQK 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	99.9
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	99.86
4dci_A	150	Uncharacterized protein; PSI-biology, midwest cent	81.11

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=99.90  E-value=2.4e-24  Score=165.29  Aligned_cols=81  Identities=20%  Similarity=0.302  Sum_probs=75.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhchhhhhhhhccc
Q psy13383          7 RKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRENFENSD   86 (105)
Q Consensus         7 kk~tPkEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~~Rl~~~ks~   86 (105)
                      ++|||+|++|+|+|.||+++|+|||++++|+++|++++.+||++||+||+++|||    ||++|||+|+++.|+|.++|+
T Consensus         4 ~~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~ari----lAkelVR~Rk~~~rl~~~kaq   79 (218)
T 3frt_A            4 QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIV----LAKEMIRSRKAVSKLYASKAH   79 (218)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999999    999999999999999999999


Q ss_pred             ccccc
Q psy13383         87 LRPQS   91 (105)
Q Consensus        87 l~~q~   91 (105)
                      |++-+
T Consensus        80 L~sV~   84 (218)
T 3frt_A           80 MNSVL   84 (218)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98643

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=99.86  E-value=1.8e-22  Score=148.74  Aligned_cols=84  Identities=19%  Similarity=0.281  Sum_probs=75.7

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHhHHHHHHHHHHHhchhhhhhhh
Q psy13383          4 LFGRKITPEEMLRKNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMTLSTERHVALLLEFVIIVGPENRENFE   83 (105)
Q Consensus         4 lFgkk~tPkEqlRe~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~~~aki~~~~LAKElVr~rK~~~Rl~~~   83 (105)
                      +|+ +|||+|++|+|++.||+++|+|||++.+|+++|++++.+||++||+||.++|||    ||+++||.|+++.++|.+
T Consensus         2 ~~~-~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki----~Ak~lvr~rk~~~~l~~~   76 (179)
T 2gd5_A            2 AMA-EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIV----LAKEMIRSRKAVSKLYAS   76 (179)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             CCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            566 599999999999999999999999999999999999999999999999999999    999999999999999999


Q ss_pred             ccccccccc
Q psy13383         84 NSDLRPQSN   92 (105)
Q Consensus        84 ks~l~~q~~   92 (105)
                      +++|+..+.
T Consensus        77 ~a~l~~v~~   85 (179)
T 2gd5_A           77 KAHMNSVLM   85 (179)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}

Probab=81.11  E-value=0.79  Score=33.13  Aligned_cols=79  Identities=11%  Similarity=0.243  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-chhH-hHHHHHHHHHHHhchhhhhhhhccccccccccc
Q psy13383         17 KNQRALNKAMRDLDREKQHMEQQEKKLIADIKKMAKEGQMT-LSTE-RHVALLLEFVIIVGPENRENFENSDLRPQSNFF   94 (105)
Q Consensus        17 e~kr~LRk~~R~LDRei~~LereEkKl~~~IKk~AKkgd~~-~aki-~~~~LAKElVr~rK~~~Rl~~~ks~l~~q~~~~   94 (105)
                      +....+...+..+|+|+.+|+.+.+++..+++   +.+... +..+ ......+  -+..+..+++..-+.+|..|-.++
T Consensus        29 ~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~---~q~~~~~~p~~~~qi~~iq--~q~~~ek~~r~e~k~~l~~ql~qv  103 (150)
T 4dci_A           29 EAEREISNGIANADQQLAQLEQEGQTVVDQVR---RQSANPLDPRVQEQVANIQ--QQVAGKRSELEEQKRNLLQQQAQV  103 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888999999999999999999998886   433121 1110 0000111  133444555555566665555555


Q ss_pred             eeEEee
Q psy13383         95 AVFTIG  100 (105)
Q Consensus        95 ~~~~~~  100 (105)
                      -.|.+|
T Consensus       104 ~~L~lG  109 (150)
T 4dci_A          104 RELEMD  109 (150)
T ss_dssp             HHSCTT
T ss_pred             hcCCCc
Confidence            444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00